{"meta":{"query_hash":"08cbd9345871","filters":{"venue":"Molecular & Cellular Proteomics"},"cohort_total":467,"direct_labels_cover":1,"predictions_cover":467,"exported":467,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/08cbd9345871","api":"https://metacan.xera.ac/api/v1/cohort?venue=Molecular+%26+Cellular+Proteomics"},"results":[{"id":"W1521887573","doi":"10.1074/mcp.m114.047050","title":"Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Cancer Institute; U.S. Public Health Service; Broad Institute; National Institute of Standards and Technology; Canary Foundation; Vanderbilt University; University of California, San Francisco; Massachusetts General Hospital","keywords":"Reproducibility; Repeatability; Analyte; Quantitative proteomics; Chromatography; Chemistry; Immunoassay; Biomarker discovery; Computational biology; Proteomics; Biology; Biochemistry; Immunology; Antibody","score_opus":0.022700198636226115,"score_gpt":0.28954370454171247,"score_spread":0.26684350590548633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1521887573","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46155924,0.0023799883,0.51985866,0.0009280416,0.0003515899,0.0070277853,0.0016847828,0.0022245965,0.003985324],"genre_scores_gemma":[0.6430976,0.00051371043,0.34228098,0.0017367812,0.0002332618,0.006324893,0.003145359,0.00033355725,0.0023338385],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.95793366,0.0155633725,0.0028475898,0.008973107,0.013738825,0.00094340503],"domain_scores_gemma":[0.98281544,0.0049509536,0.0020328655,0.003961628,0.005383938,0.00085525995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.041728612,0.001699109,0.0009077127,0.0014359306,0.0017685285,0.0021739823,0.0012507841,0.0016225799,0.000932043],"category_scores_gemma":[0.027971538,0.00084310374,0.0009773332,0.0017328383,0.0019322314,0.00085763255,0.002207225,0.0015576932,0.0010313813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001786767,0.0025128892,0.03512723,0.0005800194,0.0008440448,0.00021401336,0.0017771011,0.007697442,0.896439,0.0017381161,0.0017380822,0.049545355],"study_design_scores_gemma":[0.0010718615,0.019850848,0.121527165,0.00020198914,0.0009824896,0.0015811495,0.0007210952,0.041000996,0.7741807,0.0027232568,0.035883706,0.0002747167],"about_ca_topic_score_codex":0.002700245,"about_ca_topic_score_gemma":0.0027432812,"teacher_disagreement_score":0.041728612,"about_ca_system_score_codex":0.0014347975,"about_ca_system_score_gemma":0.005067215,"threshold_uncertainty_score":0.22068465},"labels":[],"label_agreement":null},{"id":"W1873149227","doi":"10.1074/mcp.m114.045609","title":"Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann–Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Lysosomal Storage Disorders Research","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; Fonds de recherche du Québec – Nature et technologies; National Institute on Aging; National Institutes of Health; Scheme for Promotion of Academic and Research Collaboration","keywords":"NPC1; Pathogenesis; Niemann–Pick disease; Proteomics; Mutation; Niemann–Pick disease, type C; Computational biology; Biology; Disease; Cell biology; Medicine; Genetics; Immunology; Gene; Pathology","score_opus":0.022059434085776698,"score_gpt":0.27971367652013207,"score_spread":0.25765424243435536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1873149227","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876013,0.0028165209,0.005858406,0.000101048725,0.000088543355,0.000054978867,0.0022861976,0.00008338576,0.0011096107],"genre_scores_gemma":[0.97021604,0.00421563,0.017119866,0.00018659463,0.000034439072,0.00013256613,0.0047878413,0.00006259132,0.0032443148],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99985397,0.000018212615,0.000014709974,0.000040813797,0.000052912317,0.00001941976],"domain_scores_gemma":[0.9999112,0.000021204616,0.000020808902,0.000010649373,0.000021724263,0.0000144095075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021946759,0.0004972168,0.00029665232,0.00033530025,0.00025242873,0.00029034598,0.00014460995,0.00026575782,0.0005312071],"category_scores_gemma":[0.00015270134,0.00010594374,0.00035499077,0.00035124953,0.00014827159,0.00013355621,0.00016377986,0.00028050982,0.00029412087],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006972936,0.000007231193,0.00031570747,0.000018506737,0.000005571226,0.000054369946,0.000009116821,0.000014029657,0.998909,0.000009162582,0.000017251294,0.00057018787],"study_design_scores_gemma":[0.0000088952465,0.00021487898,0.031000609,0.00001000692,0.00005187842,0.0010987355,0.00009203772,0.0011460595,0.96385205,0.000054689594,0.002457997,0.000012138376],"about_ca_topic_score_codex":0.0010193115,"about_ca_topic_score_gemma":0.0009364135,"teacher_disagreement_score":0.0010193115,"about_ca_system_score_codex":0.0001986981,"about_ca_system_score_gemma":0.00013344736,"threshold_uncertainty_score":0.0020267367},"labels":[],"label_agreement":null},{"id":"W1892358288","doi":"10.1074/mcp.m115.049726","title":"The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD)","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome Canada","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; National Institutes of Health","keywords":"Electron-transfer dissociation; Dissociation (chemistry); Ion; Chemistry; Proteome; Electron transfer; Mass spectrometry; Tandem mass spectrometry; Biochemistry; Photochemistry; Chromatography; Physical chemistry","score_opus":0.007703994731810242,"score_gpt":0.23624078981711238,"score_spread":0.22853679508530214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1892358288","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.425741,0.0135130985,0.5193637,0.001835036,0.0013369154,0.0005873781,0.0046213293,0.012033358,0.020968214],"genre_scores_gemma":[0.5636333,0.007353526,0.40160567,0.0020212017,0.00025502706,0.0007563383,0.008719788,0.0016119314,0.014043187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902856,0.00011088248,0.00004236741,0.00024782895,0.00049023284,0.00008017243],"domain_scores_gemma":[0.99952817,0.00012893435,0.00006846782,0.000080333404,0.00013505698,0.000059097758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012190773,0.0009515392,0.00039168165,0.0006819437,0.0005072254,0.001271485,0.0013274268,0.0009396681,0.0021092882],"category_scores_gemma":[0.0010417427,0.00034354313,0.0005385376,0.0004523083,0.00078216364,0.001402499,0.0019183689,0.001740455,0.0014296453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004764086,0.00009607913,0.0016217275,0.0005131629,0.00007800131,0.0002335619,0.00020203444,0.0004099134,0.94397634,0.0024939051,0.0044433703,0.04545537],"study_design_scores_gemma":[0.000059222253,0.00024038577,0.002028018,0.0000429288,0.00003868269,0.001294653,0.00005317384,0.006673668,0.9427839,0.0012915416,0.045417618,0.000076313714],"about_ca_topic_score_codex":0.00042697805,"about_ca_topic_score_gemma":0.00050069776,"teacher_disagreement_score":0.0021092882,"about_ca_system_score_codex":0.00041658105,"about_ca_system_score_gemma":0.00054061593,"threshold_uncertainty_score":0.007056296},"labels":[],"label_agreement":null},{"id":"W1893306363","doi":"10.1074/mcp.m114.046847","title":"Novel Host Proteins and Signaling Pathways in Enteropathogenic E. coli Pathogenesis Identified by Global Phosphoproteome Analysis *","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Pathogenesis; Enteropathogenic Escherichia coli; Host (biology); Signal transduction; Biology; Computational biology; Microbiology; Cell biology; Genetics; Escherichia coli; Gene; Immunology","score_opus":0.01622124436065951,"score_gpt":0.24111548818071019,"score_spread":0.2248942438200507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1893306363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989258,0.0027828051,0.0056839297,0.00010521058,0.000017784552,0.000035492405,0.0011993371,0.000087976,0.00082949776],"genre_scores_gemma":[0.9859034,0.0018623184,0.008687565,0.00014719616,0.000018755021,0.00006573245,0.0021215572,0.00002663278,0.0011668208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993813,0.0000053896815,0.000005328129,0.000020872429,0.0000114226505,0.000018773017],"domain_scores_gemma":[0.99993765,0.000007705309,0.000022335249,0.0000049993387,0.000009410403,0.000017900964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013373984,0.00041317465,0.00022536369,0.0005592417,0.0001612611,0.00031918747,0.00012022987,0.0002944132,0.0007636626],"category_scores_gemma":[0.000084397085,0.000112136855,0.00028912697,0.0004893482,0.00019008334,0.00030380962,0.00026791083,0.0003138049,0.00018216833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021577493,0.000023033273,0.0029988454,0.00007616484,0.000013846778,0.00011750236,0.000022123606,0.00009415072,0.99338734,0.0000898695,0.00005867421,0.0029025767],"study_design_scores_gemma":[0.000028342898,0.00053387403,0.47828847,0.0000558129,0.00017180758,0.0021283291,0.00032043533,0.008403565,0.5024923,0.0012069236,0.0063326177,0.00003752934],"about_ca_topic_score_codex":0.0002624279,"about_ca_topic_score_gemma":0.0003834124,"teacher_disagreement_score":0.0007636626,"about_ca_system_score_codex":0.000176654,"about_ca_system_score_gemma":0.00011782343,"threshold_uncertainty_score":0.002554655},"labels":[],"label_agreement":null},{"id":"W1920478732","doi":"10.1074/mcp.m115.048991","title":"Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Minichromosome maintenance; DNA damage; Etoposide; Proteomics; Minichromosome; Quantitative proteomics; Computational biology; Biology; Cell biology; DNA; Chemistry; Cancer research; DNA replication; Genetics; Eukaryotic DNA replication; Chromatin","score_opus":0.030008600699667116,"score_gpt":0.2896309885550207,"score_spread":0.2596223878553536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1920478732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9817255,0.005146854,0.009678836,0.00027483245,0.00009062692,0.00004361044,0.0015279118,0.00016138794,0.0013504428],"genre_scores_gemma":[0.98405045,0.0021394917,0.0075401305,0.00024814467,0.000029448061,0.00007868326,0.0014844128,0.000057581718,0.0043717553],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998826,0.000009732273,0.0000065758973,0.00003582484,0.000037271413,0.00002803254],"domain_scores_gemma":[0.99992096,0.000016327556,0.000017648841,0.000005926275,0.000019407267,0.00001969201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016358585,0.00033364497,0.0002413713,0.00033133422,0.00017682352,0.0004235925,0.00022968139,0.00043718625,0.00075393677],"category_scores_gemma":[0.00014169805,0.00014876782,0.0002525592,0.0002640341,0.00020019549,0.00023331953,0.0001944125,0.0005451262,0.00032395494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006201607,0.000007520118,0.00019933305,0.000024048844,0.000005586431,0.000016384693,0.000006957108,0.000039276918,0.9991117,0.00003245738,0.000024883018,0.00046974033],"study_design_scores_gemma":[0.000009639579,0.000098011194,0.031981677,0.000009221346,0.000023068353,0.00017537792,0.000081841754,0.0044000954,0.96030754,0.00010354336,0.0027959628,0.000014018482],"about_ca_topic_score_codex":0.0010627958,"about_ca_topic_score_gemma":0.0015280814,"teacher_disagreement_score":0.0010627958,"about_ca_system_score_codex":0.0004321968,"about_ca_system_score_gemma":0.00016571501,"threshold_uncertainty_score":0.0031358004},"labels":[],"label_agreement":null},{"id":"W1965760309","doi":"10.1074/mcp.m600169-mcp200","title":"Identification of Putative Androgen Receptor Interaction Protein Modules","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute","funders":"","keywords":"Androgen receptor; Identification (biology); Computational biology; Chemistry; Biology; Cell biology; Genetics; Prostate cancer; Ecology","score_opus":0.011271021928440721,"score_gpt":0.2724376157581181,"score_spread":0.2611665938296774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965760309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9778727,0.0017619181,0.016220735,0.00012764863,0.000026709133,0.00007612745,0.0016580087,0.0002395412,0.0020166913],"genre_scores_gemma":[0.9613075,0.001242936,0.024947202,0.00017011416,0.000027069469,0.00006253807,0.00772623,0.000054954464,0.004461527],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999175,0.0000083078985,0.000005822948,0.0000258216,0.000027095874,0.000015507394],"domain_scores_gemma":[0.99994004,0.000011360964,0.000014580339,0.0000062364898,0.000009699631,0.00001816665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009734043,0.00025448034,0.00023312253,0.00032126618,0.0001615894,0.00028202037,0.0003079529,0.00022831916,0.0012396371],"category_scores_gemma":[0.00010608053,0.00011073413,0.00045661352,0.00022387995,0.00007566014,0.0001524847,0.00021659814,0.0003999706,0.0007760751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004178804,0.000018510995,0.00048282975,0.000022192613,0.000008037555,0.000083863546,0.000007815767,0.00005151077,0.9971818,0.00016876949,0.000052621897,0.0018802799],"study_design_scores_gemma":[0.00003525892,0.00023886346,0.042405736,0.000008364638,0.00006860654,0.0013239781,0.000035766414,0.005664963,0.93407655,0.00026988753,0.01585489,0.000017109225],"about_ca_topic_score_codex":0.0005110026,"about_ca_topic_score_gemma":0.0008528323,"teacher_disagreement_score":0.0012396371,"about_ca_system_score_codex":0.00025680265,"about_ca_system_score_gemma":0.00019200475,"threshold_uncertainty_score":0.004146993},"labels":[],"label_agreement":null},{"id":"W1969782660","doi":"10.1074/mcp.m200074-mcp200","title":"PRISM, a Generic Large Scale Proteomic Investigation Strategy for Mammals*S","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":160,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Scale (ratio); Computational biology; Prism; Computer science; Biology; Geography; Cartography; Physics; Optics","score_opus":0.015671726718290056,"score_gpt":0.24921433778856636,"score_spread":0.2335426110702763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969782660","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04197434,0.001642191,0.9279722,0.0003714172,0.00018036964,0.000622787,0.0077161267,0.014190446,0.005330087],"genre_scores_gemma":[0.06103697,0.0014355225,0.91831535,0.00043250725,0.000040591505,0.000797379,0.01308772,0.0010408068,0.0038132486],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992041,0.0001329768,0.000074264164,0.00031896372,0.00020459479,0.00006508072],"domain_scores_gemma":[0.9995821,0.00006800194,0.00005311565,0.00015463222,0.00007670188,0.00006536365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016487333,0.0010166793,0.00073950883,0.0009577573,0.0007258806,0.0010674974,0.0018282136,0.00060153485,0.0031514452],"category_scores_gemma":[0.00097026996,0.000662116,0.0011416341,0.00075111917,0.00050012965,0.0012291705,0.002424258,0.0012590315,0.0027714004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025759664,0.000041037238,0.0021569945,0.00055971637,0.00016041588,0.00053582684,0.00011160036,0.00064336887,0.9354417,0.004330186,0.0061620907,0.049599454],"study_design_scores_gemma":[0.000102832375,0.00064861786,0.011784878,0.00010084553,0.0002576243,0.008347546,0.00014641069,0.019255852,0.6784657,0.006767267,0.27398926,0.00013320868],"about_ca_topic_score_codex":0.0004870203,"about_ca_topic_score_gemma":0.001383744,"teacher_disagreement_score":0.0031514452,"about_ca_system_score_codex":0.00034425472,"about_ca_system_score_gemma":0.0012244934,"threshold_uncertainty_score":0.010542631},"labels":[],"label_agreement":null},{"id":"W1971991566","doi":"10.1074/mcp.h900005-mcp200","title":"Summary of United States Human Proteome Organisation (HUPO) Symposium Entitled “Standardized Clinical Proteomics Platforms”","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; University of North Carolina at Chapel Hill; York University; Broad Institute; University of Victoria; Massachusetts General Hospital; Memorial Sloan-Kettering Cancer Center; Massachusetts Institute of Technology","keywords":"Human proteome project; Proteome; Proteomics; Library science; Computational biology; Data science; Political science; Bioinformatics; Biology; Computer science; Genetics","score_opus":0.012864148502123378,"score_gpt":0.28789522887545893,"score_spread":0.27503108037333557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971991566","genre_codex":"editorial","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004391241,0.07248488,0.01621763,0.2634354,0.36871862,0.004474719,0.053175457,0.0028319259,0.2142701],"genre_scores_gemma":[0.015337836,0.09176517,0.024300545,0.12071068,0.09652595,0.0023367384,0.10003967,0.00096642633,0.548017],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99731916,0.000381957,0.00027119843,0.00025023698,0.0014702881,0.00030709655],"domain_scores_gemma":[0.9936598,0.00042932623,0.0005206642,0.0001973947,0.0038257348,0.0013671286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00808022,0.0019490903,0.0010874346,0.002881218,0.0013784859,0.004159855,0.001664643,0.0027174617,0.040118657],"category_scores_gemma":[0.0057015913,0.000518199,0.0009321563,0.0020912965,0.00035789324,0.0020785865,0.0018699166,0.0029489333,0.030913185],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005200095,0.000026540345,0.00009696896,0.00024084149,0.0000074121244,0.000048051297,0.000014018067,0.00004835414,0.00070108956,0.0008860739,0.97568965,0.022188833],"study_design_scores_gemma":[0.000017022858,0.00007469193,0.0010250102,0.00019403234,0.000011976106,0.000052832995,0.000030098827,0.000054629323,0.00048464647,0.0005806364,0.9974596,0.000014891689],"about_ca_topic_score_codex":0.006301026,"about_ca_topic_score_gemma":0.010428377,"teacher_disagreement_score":0.040118657,"about_ca_system_score_codex":0.0022924764,"about_ca_system_score_gemma":0.009571692,"threshold_uncertainty_score":0.13421029},"labels":[],"label_agreement":null},{"id":"W1974500649","doi":"10.1074/mcp.m800540-mcp200","title":"Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":511,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; Genome British Columbia","funders":"Genome British Columbia; Genome Canada","keywords":"Chemistry; Chromatography; Trypsin; Peptide; Analyte; Selected reaction monitoring; Quantitative proteomics; Mass spectrometry; Bottom-up proteomics; Peptide mass fingerprinting; Amino acid; Coefficient of variation; Standard curve; Tandem mass spectrometry; Quantitative analysis (chemistry); Capillary electrophoresis; Proteomics; Protein mass spectrometry; Biochemistry; Enzyme","score_opus":0.014759952821491167,"score_gpt":0.2696057480718039,"score_spread":0.2548457952503127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974500649","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42602262,0.006908321,0.5548976,0.00043393686,0.00028931935,0.0015673516,0.001624851,0.0050101466,0.0032458152],"genre_scores_gemma":[0.35761535,0.0030488826,0.63190234,0.0007049974,0.00014154255,0.0020826482,0.001344122,0.00016541105,0.0029947606],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9923888,0.0019949032,0.00038435438,0.0025833254,0.0023310683,0.00031757948],"domain_scores_gemma":[0.9992137,0.00024058009,0.00017520277,0.000107741114,0.0001650842,0.00009763823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004821203,0.0012432602,0.0010217733,0.0013106464,0.00046228708,0.0012376645,0.0008789134,0.0012323939,0.0006695607],"category_scores_gemma":[0.0026058077,0.00063576177,0.00056552386,0.0009178686,0.0007866833,0.0007007449,0.000794607,0.0013464194,0.0006936226],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061487785,0.00014986478,0.0011042829,0.00016774824,0.000055914563,0.00010215991,0.00015277848,0.0005931683,0.96549916,0.0005025016,0.00048201464,0.03057551],"study_design_scores_gemma":[0.000061926665,0.0006904612,0.0024686712,0.000016401422,0.000051894312,0.00056670286,0.000024850202,0.007700896,0.9845709,0.00038767504,0.003416789,0.00004283946],"about_ca_topic_score_codex":0.00026636306,"about_ca_topic_score_gemma":0.0003636785,"teacher_disagreement_score":0.004821203,"about_ca_system_score_codex":0.0005705498,"about_ca_system_score_gemma":0.00082455133,"threshold_uncertainty_score":0.025497198},"labels":[],"label_agreement":null},{"id":"W1976596063","doi":"10.1074/mcp.m800224-mcp200","title":"Molecular Characterization of Propionyllysines in Non-histone Proteins","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Sirtuins and Resveratrol in Medicine","field":"Medicine","cited_by":162,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Cancer Institute; National Institutes of Health","keywords":"Histone; Computational biology; Chemistry; Characterization (materials science); Biology; Biochemistry; DNA; Nanotechnology; Materials science","score_opus":0.007515491596145436,"score_gpt":0.2338918624893982,"score_spread":0.22637637089325277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976596063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98548985,0.0019962152,0.010073866,0.00011599642,0.00003173895,0.00003763583,0.0009898724,0.00004722347,0.0012176149],"genre_scores_gemma":[0.97684616,0.0015289988,0.011540054,0.0001274526,0.000033348602,0.00006960448,0.004811521,0.000057611713,0.0049852505],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999304,0.000009151051,0.0000053559243,0.000022244576,0.000017864271,0.0000150173655],"domain_scores_gemma":[0.99973756,0.00004769005,0.000096423486,0.000025044828,0.000034658773,0.00005862855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012452803,0.0003994337,0.00014412485,0.00024163425,0.00013332882,0.00018221783,0.00021001762,0.00027689108,0.0011617468],"category_scores_gemma":[0.00022960849,0.000095534175,0.00032956622,0.00022322367,0.0001355611,0.00025402123,0.00013881736,0.00046347288,0.00052302337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000737797,0.000009582653,0.00034844613,0.000022112408,0.000005492898,0.00006487847,0.000009062106,0.000025197425,0.9986318,0.00003774024,0.000010587363,0.0007612913],"study_design_scores_gemma":[0.000010313813,0.00022611284,0.022825021,0.000008981774,0.00001871195,0.00049041235,0.00003479584,0.000762626,0.9727499,0.00011959915,0.002748136,0.0000054159514],"about_ca_topic_score_codex":0.00028305664,"about_ca_topic_score_gemma":0.0002406929,"teacher_disagreement_score":0.0011617468,"about_ca_system_score_codex":0.00017875011,"about_ca_system_score_gemma":0.00012087592,"threshold_uncertainty_score":0.0038864613},"labels":[],"label_agreement":null},{"id":"W1978283502","doi":"10.1074/mcp.m110.004804","title":"Identification of Differentially Regulated Secretome Components During Skeletal Myogenesis","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Canadian Institutes of Health Research","keywords":"Myogenesis; Cell biology; C2C12; Biology; Cellular differentiation; Extracellular; Secretory protein; Mesenchymal stem cell; Progenitor cell; Follistatin; Myocyte; Biochemistry; Stem cell; Secretion; Gene","score_opus":0.00961296816165267,"score_gpt":0.1990988061542937,"score_spread":0.18948583799264104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978283502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909473,0.0021351906,0.0049280375,0.00005023322,0.00001770895,0.000026666376,0.0012584123,0.000075130476,0.00056126365],"genre_scores_gemma":[0.98172486,0.0024140088,0.010269178,0.00013721662,0.000033065106,0.000104897255,0.002850241,0.000044266257,0.0024223153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982685,0.000016197115,0.0000126339,0.000060885126,0.000057375695,0.00002614634],"domain_scores_gemma":[0.9998399,0.000031071693,0.000057185192,0.000011124883,0.000029843251,0.000030858602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022891404,0.0004247457,0.0004296068,0.0008768506,0.00018623837,0.000505039,0.0001665022,0.000318153,0.0004844072],"category_scores_gemma":[0.00024861287,0.00014982127,0.00025821952,0.00057688827,0.00026933016,0.0003593224,0.00028839713,0.0003321733,0.00028960587],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006750546,0.0000048339007,0.00095384306,0.000020161355,0.000004686053,0.00004214115,0.000018179004,0.000022889295,0.9980469,0.000020702275,0.000009823704,0.0007885158],"study_design_scores_gemma":[0.000011916186,0.00020534037,0.17164133,0.000020130754,0.00005877929,0.0006402338,0.0001119978,0.002147037,0.8232048,0.00017708639,0.0017621281,0.000019195531],"about_ca_topic_score_codex":0.00041189283,"about_ca_topic_score_gemma":0.00059947645,"teacher_disagreement_score":0.0008768506,"about_ca_system_score_codex":0.00023896876,"about_ca_system_score_gemma":0.00021762887,"threshold_uncertainty_score":0.0017338395},"labels":[],"label_agreement":null},{"id":"W1978887710","doi":"10.1074/mcp.m112.017962","title":"Deletion of Cysteine Cathepsins B or L Yields Differential Impacts on Murine Skin Proteome and Degradome","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Proteome; Cysteine; Chemistry; Differential (mechanical device); Proteomics; Cathepsin; Chromatography; Molecular biology; Computational biology; Biochemistry; Biology; Enzyme; Gene; Physics","score_opus":0.00938718204946502,"score_gpt":0.2253350012299012,"score_spread":0.21594781918043618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978887710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935049,0.0011292319,0.0029349169,0.000051469942,0.000015064532,0.000026712518,0.0013318768,0.00008493885,0.00092090585],"genre_scores_gemma":[0.9898213,0.0012066899,0.0039557638,0.000079292615,0.0000066187704,0.000057131176,0.0019463752,0.000070429414,0.0028562718],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99981445,0.000021204727,0.000025606241,0.00006316005,0.00003997905,0.000035643217],"domain_scores_gemma":[0.9997565,0.000030041212,0.000091971604,0.000030393821,0.000016999347,0.00007404066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014914123,0.00038996132,0.00016526923,0.00056359824,0.00011493249,0.0002900729,0.00015284469,0.0002788297,0.000942514],"category_scores_gemma":[0.00010970289,0.00018814567,0.0002990761,0.0002048289,0.00023988074,0.00019061986,0.00026820475,0.00039050315,0.00034653992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007686896,0.000009964439,0.00021861517,0.000013247894,0.000004067337,0.000041224877,0.000006251497,0.000025196561,0.9991491,0.000024216026,0.000010188422,0.00042120175],"study_design_scores_gemma":[0.0000136899025,0.0002911923,0.016755931,0.0000105015,0.000025995252,0.00068075553,0.000034129698,0.00055918493,0.9799296,0.000085115826,0.0016065248,0.0000073793617],"about_ca_topic_score_codex":0.0003279549,"about_ca_topic_score_gemma":0.0004957001,"teacher_disagreement_score":0.000942514,"about_ca_system_score_codex":0.00021491376,"about_ca_system_score_gemma":0.00014982469,"threshold_uncertainty_score":0.0031530857},"labels":[],"label_agreement":null},{"id":"W1980798823","doi":"10.1074/mcp.m111.016642","title":"Target Identification by Chromatographic Co-elution: Monitoring of Drug-Protein Interactions without Immobilization or Chemical Derivatization","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Derivatization; Chemistry; Target protein; Chromatography; Biochemistry; Mass spectrometry; Gene","score_opus":0.018463771502942324,"score_gpt":0.3075451703194276,"score_spread":0.28908139881648526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980798823","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3353217,0.010804364,0.6409102,0.0011103803,0.00035048762,0.0008151359,0.0015139693,0.0040263953,0.005147412],"genre_scores_gemma":[0.5605737,0.010131831,0.41607288,0.00140887,0.00019712084,0.0011247767,0.002588125,0.00052571873,0.0073769893],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99758077,0.00034937213,0.00012695963,0.0006477893,0.0010716259,0.00022342391],"domain_scores_gemma":[0.9984763,0.0004709485,0.000324743,0.00020918073,0.00039731053,0.00012155759],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012267148,0.0014590591,0.001269994,0.0016067153,0.0006589699,0.0011183305,0.0011278876,0.0013416966,0.00095443515],"category_scores_gemma":[0.001449364,0.0006501647,0.0006578919,0.0013426106,0.0008298731,0.0008056083,0.0010002161,0.0019955377,0.0017424469],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004299897,0.000040910538,0.00022489642,0.00007697136,0.000018359859,0.000026808915,0.000014845739,0.000084028026,0.9940585,0.00007053172,0.00013377971,0.005207373],"study_design_scores_gemma":[0.0000039053707,0.00005920045,0.0007696346,0.0000030412682,0.000016493079,0.00017911529,0.000008395529,0.0017258507,0.99597,0.00002944008,0.001224666,0.000010215891],"about_ca_topic_score_codex":0.0010848922,"about_ca_topic_score_gemma":0.001988532,"teacher_disagreement_score":0.0016067153,"about_ca_system_score_codex":0.000850695,"about_ca_system_score_gemma":0.0010201266,"threshold_uncertainty_score":0.0064875484},"labels":[],"label_agreement":null},{"id":"W1986776576","doi":"10.1074/mcp.t500036-mcp200","title":"Expanding the Subproteome of the Inner Mitochondria Using Protein Separation Technologies","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"National Cancer Institute; National Heart, Lung, and Blood Institute","keywords":"Mitochondrion; Computational biology; Proteome; Chemistry; Biology; Biochemistry","score_opus":0.008876412733076308,"score_gpt":0.25181494320779624,"score_spread":0.24293853047471992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986776576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93106943,0.0097290715,0.053828772,0.00031768918,0.000046733414,0.00016570062,0.0027680767,0.00033308897,0.001741307],"genre_scores_gemma":[0.75633717,0.0131376535,0.21229903,0.00041953396,0.00009320153,0.00032087739,0.0162108,0.00013681957,0.0010450095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986105,0.00015407654,0.00012599923,0.0003065593,0.0006870129,0.000115851864],"domain_scores_gemma":[0.9992205,0.00025941074,0.00021067889,0.00008362297,0.000145703,0.00008006694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011046776,0.0007019834,0.0014340531,0.0035266762,0.00042935825,0.0016062465,0.0007145757,0.0005888655,0.0006348726],"category_scores_gemma":[0.001029134,0.00030773573,0.00093402725,0.0027574191,0.00028415874,0.0020380334,0.0014549015,0.0008089025,0.0007219194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015573871,0.000052124313,0.0029174911,0.00020878993,0.000040119252,0.00009275181,0.000051791278,0.00027768748,0.97863215,0.00012866057,0.00007899871,0.017363723],"study_design_scores_gemma":[0.000056982666,0.000952083,0.11324635,0.00016868359,0.0004537185,0.004097096,0.00023074921,0.0107003115,0.8446154,0.0017547938,0.0236154,0.000108518616],"about_ca_topic_score_codex":0.00044478785,"about_ca_topic_score_gemma":0.00047880976,"teacher_disagreement_score":0.0035266762,"about_ca_system_score_codex":0.00037945327,"about_ca_system_score_gemma":0.0005115394,"threshold_uncertainty_score":0.005842209},"labels":[],"label_agreement":null},{"id":"W1988290050","doi":"10.1074/mcp.m300115-mcp200","title":"Proteomic Characterization of Protein Phosphatase Complexes of the Mammalian Nucleus","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Protein phosphatase 1; Phosphatase; Protein phosphatase 2; Biochemistry; Protein subunit; Nuclear protein; Biology; Phosphorylation; Affinity chromatography; Serine; Threonine; Tandem affinity purification; snRNP; Molecular biology; RNA splicing; RNA; Enzyme; Transcription factor","score_opus":0.004753841434816049,"score_gpt":0.19279505679128295,"score_spread":0.1880412153564669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988290050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9585405,0.013417943,0.02044898,0.0002287904,0.00006696248,0.00010401841,0.0026639416,0.00017899762,0.0043499703],"genre_scores_gemma":[0.9397662,0.014102428,0.024922831,0.0003041513,0.00009552208,0.0001549371,0.0115797045,0.00016119269,0.008912876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988544,0.00001048556,0.000008375187,0.000036522953,0.000043308264,0.000015983049],"domain_scores_gemma":[0.9999138,0.0000148451345,0.000015793345,0.000007880606,0.000027942291,0.000019854984],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001607448,0.00035088137,0.00037289195,0.00046320038,0.00020305162,0.00039420245,0.000214998,0.0001980155,0.0005776673],"category_scores_gemma":[0.00020550772,0.000121291,0.00027880687,0.00038129318,0.00015525556,0.00024407312,0.000225068,0.00027906828,0.0005914583],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038307495,0.0000055021114,0.00031656836,0.00007282183,0.000008568303,0.00006456765,0.000017328797,0.000030014695,0.99800473,0.000057386602,0.000035042744,0.0013491719],"study_design_scores_gemma":[0.00001593058,0.0002196642,0.053746443,0.000035758214,0.00009239089,0.002250152,0.00014380604,0.0030832712,0.9227863,0.0002756954,0.017331917,0.000018608278],"about_ca_topic_score_codex":0.0010292021,"about_ca_topic_score_gemma":0.0014420843,"teacher_disagreement_score":0.0010292021,"about_ca_system_score_codex":0.00031714363,"about_ca_system_score_gemma":0.0003067021,"threshold_uncertainty_score":0.0023010373},"labels":[],"label_agreement":null},{"id":"W1995671308","doi":"10.1074/mcp.m300110-mcp200","title":"Depth of Proteome Issues","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"National Institute of General Medical Sciences","keywords":"Proteome; Computational biology; Chemistry; Computer science; Biology; Biochemistry","score_opus":0.00889946133140648,"score_gpt":0.2556932934019867,"score_spread":0.24679383207058023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995671308","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.060650326,0.077176034,0.3480883,0.3214955,0.018276459,0.0007126681,0.0019124605,0.0019474198,0.16974084],"genre_scores_gemma":[0.4438727,0.048739832,0.3398731,0.0770876,0.0104603125,0.0010713614,0.0024009182,0.0020632793,0.07443095],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99217016,0.0031505472,0.0005294366,0.0011660495,0.0025066948,0.00047717537],"domain_scores_gemma":[0.9848946,0.005751277,0.0010746634,0.003260757,0.0038387561,0.0011800037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.023450527,0.0011286443,0.00097234524,0.002518392,0.0023971333,0.0076719457,0.0023395915,0.002769634,0.01072162],"category_scores_gemma":[0.026408564,0.00072817015,0.0011540233,0.0020884464,0.0038300848,0.015152032,0.00901581,0.0064827604,0.003318688],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004383683,0.00017101658,0.004056031,0.0020939985,0.00013818024,0.0010772019,0.005289262,0.001766241,0.026044147,0.5051993,0.07571698,0.37800926],"study_design_scores_gemma":[0.000033056163,0.00011958657,0.0023273872,0.0007458745,0.00004080039,0.0015751765,0.002726631,0.0023627637,0.007099802,0.2831153,0.6997912,0.00006240237],"about_ca_topic_score_codex":0.00060124305,"about_ca_topic_score_gemma":0.0005729858,"teacher_disagreement_score":0.023450527,"about_ca_system_score_codex":0.0030598624,"about_ca_system_score_gemma":0.00355438,"threshold_uncertainty_score":0.12401968},"labels":[],"label_agreement":null},{"id":"W1997215728","doi":"10.1074/mcp.m400152-mcp200","title":"Quantitative Proteomic Analysis of Sokotrasterol Sulfate-stimulated Primary Human Endothelial Cells","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Hormonal and reproductive studies","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Cancer Institute","keywords":"Angiogenesis; Endothelial stem cell; Cell biology; Chemistry; Sulfate; Endothelium; Proteome; Quantitative proteomics; Proteomics; Biochemistry; Biology; Cancer research; Genetics; Gene; In vitro","score_opus":0.01626504855449825,"score_gpt":0.2672980570234137,"score_spread":0.25103300846891546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997215728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.976944,0.0036197274,0.015695319,0.00009685354,0.0001089393,0.00011799992,0.0016396453,0.00008599755,0.0016915577],"genre_scores_gemma":[0.9427075,0.008287545,0.035324775,0.00029933246,0.000103019054,0.0004668131,0.0062486064,0.000060172486,0.0065022367],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997265,0.000035652458,0.000023467346,0.000058116646,0.000117287294,0.00003901291],"domain_scores_gemma":[0.9998456,0.000031108757,0.000020204974,0.000014486078,0.00007158758,0.000016915586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002816619,0.00040942518,0.00042195382,0.000571627,0.0003202543,0.00034084794,0.00019855946,0.00026841092,0.0005319574],"category_scores_gemma":[0.00021832032,0.00014617905,0.0004276343,0.00055272935,0.00015621008,0.0001500978,0.00014924265,0.00034033819,0.00034867157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036552872,0.000012415573,0.00022139518,0.000023546601,0.000008955881,0.000020826385,0.000015975822,0.00001554072,0.99886334,0.000012545044,0.000014646681,0.000754408],"study_design_scores_gemma":[0.000010367498,0.00030998795,0.030389214,0.000009643309,0.00006436095,0.00039060487,0.00008226955,0.0011251781,0.96441156,0.0000450323,0.0031492212,0.000012590314],"about_ca_topic_score_codex":0.00077302055,"about_ca_topic_score_gemma":0.0012552436,"teacher_disagreement_score":0.00077302055,"about_ca_system_score_codex":0.00021068328,"about_ca_system_score_gemma":0.00022943056,"threshold_uncertainty_score":0.0017796159},"labels":[],"label_agreement":null},{"id":"W1997455293","doi":"10.1074/mcp.m800230-mcp200","title":"Identification of Nitroxyl-induced Modifications in Human Platelet Proteins Using a Novel Mass Spectrometric Detection Method","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Chemistry; Identification (biology); Chromatography; Platelet; Nitroxyl; Mass spectrometry; Biochemistry; Computational biology; Biology; Organic chemistry; Immunology","score_opus":0.02110353136942525,"score_gpt":0.28635077584545476,"score_spread":0.26524724447602954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997455293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80851346,0.00602613,0.17996956,0.0005649613,0.00016377556,0.00031703064,0.0008052234,0.00062490324,0.0030149391],"genre_scores_gemma":[0.80042326,0.005656629,0.1864834,0.00075642066,0.00010989068,0.00047406976,0.0013576025,0.0000703566,0.004668319],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996804,0.00005131622,0.000016924294,0.00010045389,0.0001183338,0.00003259022],"domain_scores_gemma":[0.9997911,0.00003881769,0.000079621685,0.000013178933,0.000051686555,0.000025600782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037997635,0.0006284188,0.00020385298,0.00039437105,0.00019779551,0.00021791873,0.00040332292,0.0007577354,0.0004824129],"category_scores_gemma":[0.0003275381,0.00020652486,0.00026465007,0.0002484401,0.00024570283,0.00024832383,0.00028045848,0.00058536226,0.00040615667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026179992,0.000011497712,0.00018513837,0.000024955667,0.0000068428494,0.000051562893,0.0000115711255,0.00001888438,0.99805367,0.000034455607,0.000034276825,0.0015409735],"study_design_scores_gemma":[0.000011073916,0.00028460383,0.00407859,0.000007223955,0.000021896263,0.0012481805,0.000020665648,0.0018641873,0.99030006,0.000054373828,0.002096181,0.00001297062],"about_ca_topic_score_codex":0.00029839255,"about_ca_topic_score_gemma":0.0006557554,"teacher_disagreement_score":0.0007577354,"about_ca_system_score_codex":0.00023639305,"about_ca_system_score_gemma":0.0002620024,"threshold_uncertainty_score":0.0020095706},"labels":[],"label_agreement":null},{"id":"W2000919336","doi":"10.1074/mcp.m100020-mcp200","title":"A Proteomic Approach for the Identification of Cell-surface Proteins Shed by Metalloproteases","year":2002,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research & Development Corporation","funders":"","keywords":"Identification (biology); Computational biology; Metalloproteinase; Proteomics; Cell biology; Chemistry; Biology; Biochemistry; Gene; Enzyme; Botany","score_opus":0.01999200873155451,"score_gpt":0.2496886497261492,"score_spread":0.2296966409945947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000919336","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29403573,0.017132476,0.6764266,0.0010096354,0.00081728544,0.0012073352,0.0031456244,0.0012099899,0.005015338],"genre_scores_gemma":[0.24518883,0.012834785,0.729842,0.0009361801,0.00022777834,0.0014551388,0.004071867,0.0001832339,0.0052601113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992005,0.00021759514,0.00008186622,0.0001696078,0.00026545356,0.000064980275],"domain_scores_gemma":[0.99953675,0.00014285701,0.000070474154,0.00008073485,0.00011312113,0.00005613676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007260899,0.0010297868,0.00067115563,0.001408733,0.00084874325,0.00067607313,0.00067944,0.0009436457,0.00094220386],"category_scores_gemma":[0.0004911515,0.00046052775,0.00075641007,0.00078463944,0.00043462592,0.00071210694,0.00063260336,0.0015679455,0.0010174855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000214296,0.00002669084,0.00009401433,0.00008948181,0.000011424303,0.000042295273,0.000010660774,0.000017164506,0.9971021,0.000084493106,0.000054845077,0.002445471],"study_design_scores_gemma":[0.000021144951,0.00036292258,0.005248534,0.000028796681,0.00006655742,0.001469007,0.000040905783,0.0017790527,0.9809926,0.00024042168,0.009717221,0.000032885964],"about_ca_topic_score_codex":0.00035922087,"about_ca_topic_score_gemma":0.0008285049,"teacher_disagreement_score":0.001408733,"about_ca_system_score_codex":0.0004168339,"about_ca_system_score_gemma":0.000549064,"threshold_uncertainty_score":0.0038399696},"labels":[],"label_agreement":null},{"id":"W2001354860","doi":"10.1074/mcp.m110.005785","title":"Feature-matching Pattern-based Support Vector Machines for Robust Peptide Mass Fingerprinting","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Key Research and Development Program of China; State Key Laboratory of Bioreactor Engineering; East China University of Science and Technology; La Trobe University","keywords":"Peptide mass fingerprinting; Computer science; Matching (statistics); Pattern recognition (psychology); Artificial intelligence; Pattern matching; Feature (linguistics); Data mining; Computational biology; Chemistry; Proteomics; Mathematics; Biology; Biochemistry; Statistics","score_opus":0.017461609995194437,"score_gpt":0.23667280866963827,"score_spread":0.21921119867444383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001354860","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04230727,0.0003443973,0.95506084,0.000081484475,0.000032553013,0.00008059854,0.00014295435,0.0016696289,0.0002802417],"genre_scores_gemma":[0.60480815,0.00016987191,0.39344415,0.000069030815,0.000033049848,0.00027801463,0.0005832724,0.00007702141,0.0005374154],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997543,0.0008214862,0.00030571388,0.00048700877,0.000640528,0.0002023405],"domain_scores_gemma":[0.997088,0.0015129913,0.0003162037,0.00026584597,0.00074711797,0.000069824964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029307895,0.001004793,0.0012344402,0.0011331263,0.0003324705,0.0007878251,0.0011109214,0.0008816183,0.00084168505],"category_scores_gemma":[0.008178266,0.00028742186,0.000796971,0.001152262,0.00037567705,0.0009219161,0.0006962148,0.0011328835,0.000496548],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004428207,0.00017908611,0.0026018748,0.0001793902,0.00013301052,0.000107346525,0.00007852262,0.31141004,0.018543255,0.0022398366,0.0013023835,0.6627825],"study_design_scores_gemma":[0.000010092939,0.000070339265,0.0004238032,0.000005539295,0.000009025872,0.000020887623,0.000011602398,0.99355704,0.004613712,0.0010420487,0.0002259526,0.00000999294],"about_ca_topic_score_codex":0.0019993123,"about_ca_topic_score_gemma":0.00083437486,"teacher_disagreement_score":0.0029307895,"about_ca_system_score_codex":0.00046084018,"about_ca_system_score_gemma":0.00081490114,"threshold_uncertainty_score":0.015499711},"labels":[],"label_agreement":null},{"id":"W2002212380","doi":"10.1074/mcp.r110.003863","title":"Gold for Ubiquitin in Vancouver","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Ubiquitin; Computational biology; Chemistry; Biology; Biochemistry; Gene","score_opus":0.007075174867206182,"score_gpt":0.22559852745754774,"score_spread":0.21852335259034156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002212380","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014437808,0.12461194,0.007174732,0.045833375,0.03431844,0.00018824967,0.0024224964,0.0023053351,0.7817015],"genre_scores_gemma":[0.009891989,0.036063556,0.004649377,0.013616118,0.002265961,0.00019083278,0.0016702014,0.00053320493,0.9311187],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99811316,0.00025682905,0.00011476776,0.00057822594,0.00068451505,0.00025246202],"domain_scores_gemma":[0.9987772,0.00013857576,0.00008434714,0.0003480513,0.00030277602,0.00034909413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014785392,0.0011784739,0.0011237935,0.0020561393,0.0022941302,0.004677387,0.0015830488,0.003938427,0.27569598],"category_scores_gemma":[0.0026750076,0.0005365653,0.0006565102,0.0015614816,0.001923374,0.004236426,0.0051027127,0.004562091,0.27007452],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008805091,0.00003340949,0.00026304778,0.0005499945,0.000018085035,0.00017693723,0.00020496226,0.00007014108,0.0031639077,0.1086867,0.62879413,0.25795075],"study_design_scores_gemma":[0.00000205689,0.000005532906,0.000048284393,0.000060634266,0.0000010695129,0.000046311477,0.000018698061,0.000007572423,0.00024778245,0.0031874618,0.9963722,0.0000024060416],"about_ca_topic_score_codex":0.0014471669,"about_ca_topic_score_gemma":0.0034802891,"teacher_disagreement_score":0.27569598,"about_ca_system_score_codex":0.0027069163,"about_ca_system_score_gemma":0.00254329,"threshold_uncertainty_score":0.9222949},"labels":[],"label_agreement":null},{"id":"W2008843662","doi":"10.1074/mcp.m114.047159","title":"The Last Enzyme of the De Novo Purine Synthesis Pathway 5-aminoimidazole-4-carboxamide Ribonucleotide Formyltransferase/IMP Cyclohydrolase (ATIC) Plays a Central Role in Insulin Signaling and the Golgi/Endosomes Protein Network*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Metabolism, Diabetes, and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Fondation des Etoiles","keywords":"Endosome; Golgi apparatus; Chemistry; Cell biology; Purine; Purine metabolism; Enzyme; Biochemistry; Biology; Receptor; Endoplasmic reticulum","score_opus":0.0047693878444046295,"score_gpt":0.17624213030621852,"score_spread":0.17147274246181388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008843662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9230073,0.02348646,0.041510653,0.00040787752,0.00017589987,0.0001395573,0.0025186827,0.0011145393,0.0076388814],"genre_scores_gemma":[0.9774451,0.002805218,0.01194778,0.00008617879,0.000025868609,0.000045602425,0.0021324994,0.00005064741,0.005461114],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998658,0.000008312145,0.000010654415,0.000055604534,0.000032007156,0.000027673137],"domain_scores_gemma":[0.9998878,0.000010669781,0.000034479413,0.000013019501,0.00002610483,0.000027888322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000097676835,0.0005061031,0.00033443735,0.00034478385,0.00029161017,0.00054743415,0.00020134098,0.00029143866,0.0011428474],"category_scores_gemma":[0.00012030259,0.00015848865,0.00033937764,0.00022163987,0.0001819272,0.00023295255,0.0002200631,0.0003644271,0.0006712401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012705884,0.000017739865,0.0014001573,0.000093717696,0.000015575126,0.00013394452,0.000011912323,0.00014981831,0.9880427,0.0002459342,0.00015407483,0.00960731],"study_design_scores_gemma":[0.000008495546,0.00008818025,0.010382095,0.000005854287,0.000018266326,0.0006767891,0.000014922965,0.0012651618,0.9785896,0.00007324223,0.008868529,0.000008746778],"about_ca_topic_score_codex":0.001856049,"about_ca_topic_score_gemma":0.0014396639,"teacher_disagreement_score":0.001856049,"about_ca_system_score_codex":0.0007283481,"about_ca_system_score_gemma":0.00029908237,"threshold_uncertainty_score":0.0052846074},"labels":[],"label_agreement":null},{"id":"W2008909642","doi":"10.1074/mcp.m113.031401","title":"Proteomic Analysis of Eggs from Mytilus edulis Females Differing in Mitochondrial DNA Transmission Mode","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bedford Institute of Oceanography; Fisheries and Oceans Canada","funders":"Dartmouth College","keywords":"Biology; Mitochondrial DNA; Mytilus; Transcriptome; Embryo; Sperm; Genome; Genetics; Population; Mitochondrion; Non-Mendelian inheritance; Evolutionary biology; Zoology; Andrology; Gene; Gene expression; Ecology","score_opus":0.008552277004155487,"score_gpt":0.23673213750114294,"score_spread":0.22817986049698746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008909642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970952,0.000541203,0.0007479971,0.00003531361,0.000009388407,0.000009217695,0.0008475497,0.0000196311,0.0006945687],"genre_scores_gemma":[0.9906318,0.00068236346,0.0026125356,0.00012825437,0.000011190839,0.000023670387,0.002848748,0.000031911066,0.0030293865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999436,0.000003083369,0.000005602061,0.000020454157,0.000017520748,0.000009756815],"domain_scores_gemma":[0.99986243,0.000022691722,0.00003956118,0.000009409938,0.00004027084,0.000025532292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000868414,0.00021099306,0.00016395142,0.00037751137,0.00019026814,0.00021675414,0.00013641577,0.00021399301,0.00083147635],"category_scores_gemma":[0.00015620815,0.0001231031,0.00020019356,0.00017210045,0.00012285967,0.00014784536,0.00020847959,0.00021818839,0.00029090402],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040067553,0.000008358328,0.0039718095,0.000037849804,0.000010883521,0.00010879894,0.000061034,0.0000131126535,0.99434656,0.00001536599,0.000019116591,0.0013669246],"study_design_scores_gemma":[0.000007716815,0.0002640991,0.6661063,0.000019129706,0.00006330705,0.0013127107,0.0003735872,0.0005621933,0.32882357,0.000043468786,0.002409976,0.000013981611],"about_ca_topic_score_codex":0.00068578275,"about_ca_topic_score_gemma":0.0014984002,"teacher_disagreement_score":0.00083147635,"about_ca_system_score_codex":0.00009908099,"about_ca_system_score_gemma":0.00007514574,"threshold_uncertainty_score":0.00278157},"labels":[],"label_agreement":null},{"id":"W2009455674","doi":"10.1074/mcp.m110.005645","title":"Evaluation of Large Scale Quantitative Proteomic Assay Development Using Peptide Affinity-based Mass Spectrometry","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":138,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Cancer Institute","keywords":"Multiplex; Peptide; Immunoassay; Chemistry; Antibody; Quantitative proteomics; Isotope dilution; Mass spectrometry; Selected reaction monitoring; Affinity chromatography; Chromatography; Biochemistry; Proteomics; Tandem mass spectrometry; Molecular biology; Biology; Enzyme; Bioinformatics; Immunology","score_opus":0.04763583582376229,"score_gpt":0.30331979533371317,"score_spread":0.2556839595099509,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009455674","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6145856,0.0019379657,0.37663567,0.0003726974,0.00012343707,0.002083296,0.00069374684,0.00165217,0.0019155291],"genre_scores_gemma":[0.58951855,0.0015963637,0.40263307,0.0002833954,0.000053780484,0.0017828149,0.0014009529,0.0001619903,0.0025690643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98865765,0.0032396216,0.0006488054,0.001326384,0.0057025794,0.00042486464],"domain_scores_gemma":[0.99665076,0.0014786076,0.00037703055,0.0003526128,0.0009660076,0.00017495465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009203355,0.0015485252,0.00092701794,0.00079992577,0.0004156019,0.0013954691,0.0013979605,0.0010910872,0.00064867333],"category_scores_gemma":[0.004824861,0.0006215184,0.0006441606,0.00063592056,0.00073251245,0.00071275973,0.0009626041,0.00093094254,0.0007679731],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020008883,0.0002462778,0.0007012933,0.00012585805,0.00004334758,0.000058588903,0.00004338377,0.0010372814,0.9891166,0.00016504536,0.0001041637,0.008157966],"study_design_scores_gemma":[0.000025416386,0.00090254785,0.001688307,0.000007605235,0.00003241855,0.00018112233,0.000027515209,0.0115084015,0.98424387,0.000070766364,0.0012938151,0.000018254887],"about_ca_topic_score_codex":0.0006551513,"about_ca_topic_score_gemma":0.0009873807,"teacher_disagreement_score":0.009203355,"about_ca_system_score_codex":0.0008818889,"about_ca_system_score_gemma":0.00084867165,"threshold_uncertainty_score":0.048672616},"labels":[],"label_agreement":null},{"id":"W2012456076","doi":"10.1074/mcp.m110.000679","title":"Rare Cell Proteomic Reactor Applied to Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)-based Quantitative Proteomics Study of Human Embryonic Stem Cell Differentiation","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Stable isotope labeling by amino acids in cell culture; Proteomics; Embryonic stem cell; Quantitative proteomics; Chemistry; Cell; Biology; Cellular differentiation; Cell biology; Computational biology; Biochemistry; Gene","score_opus":0.009182656666263183,"score_gpt":0.24551762412385786,"score_spread":0.23633496745759466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012456076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65893,0.00257941,0.33421928,0.00016091146,0.00008626237,0.00020382807,0.00084678375,0.001097033,0.0018765151],"genre_scores_gemma":[0.559596,0.003054716,0.43218747,0.00020539416,0.00004131962,0.00041499626,0.0016623661,0.00017417375,0.002663494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995696,0.0000621153,0.000021929143,0.00015395062,0.00016125533,0.00003119344],"domain_scores_gemma":[0.99980706,0.000060866096,0.00003487521,0.000020264672,0.000050863968,0.000026016582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007732014,0.00056266726,0.00049617735,0.00032976957,0.00019452878,0.0004447762,0.0004899512,0.00042773195,0.00036297206],"category_scores_gemma":[0.0003744258,0.00023629413,0.0003138363,0.00028380624,0.00027844743,0.00034270258,0.00049873145,0.0006143888,0.00032517314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020647765,0.0000060698176,0.00011000138,0.00002247773,0.0000044845624,0.000019198425,0.000009956926,0.000111673355,0.9981139,0.000116973984,0.00002212338,0.0014424289],"study_design_scores_gemma":[0.000005310475,0.00006438806,0.00081466784,0.0000028541565,0.000014975361,0.000112523536,0.000008419946,0.005760883,0.9922151,0.0000560618,0.0009356759,0.000009081119],"about_ca_topic_score_codex":0.00057851477,"about_ca_topic_score_gemma":0.0005768915,"teacher_disagreement_score":0.0007732014,"about_ca_system_score_codex":0.00033558198,"about_ca_system_score_gemma":0.0005283084,"threshold_uncertainty_score":0.0040891767},"labels":[],"label_agreement":null},{"id":"W2012913476","doi":"10.1074/mcp.m900223-mcp200","title":"Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":187,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; University of California, San Francisco; National Institutes of Health; University of North Carolina at Chapel Hill; University of British Columbia; Broad Institute; Memorial Sloan-Kettering Cancer Center; Indiana University-Purdue University Indianapolis; Lawrence Berkeley National Laboratory; University of Victoria; University of Arizona; Massachusetts General Hospital; York University; National Institute of Standards and Technology; Vanderbilt University; School of Medicine, Vanderbilt University; Buck Institute for Research on Aging; Purdue University; University of Washington","keywords":"Chromatography; Mass spectrometry; Tandem mass spectrometry; Chemistry; Proteomics; Liquid chromatography–mass spectrometry; Top-down proteomics; Selected reaction monitoring; Biochemistry","score_opus":0.017978476945393583,"score_gpt":0.28030020923082677,"score_spread":0.2623217322854332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012913476","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11422096,0.017381692,0.8526391,0.0013276956,0.00032433833,0.00131336,0.0015734562,0.004892233,0.0063271807],"genre_scores_gemma":[0.41288128,0.0026884882,0.57879496,0.00033881323,0.00017501626,0.0012419325,0.0024854573,0.00053108967,0.0008630061],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9592243,0.016268993,0.004434965,0.0022460194,0.01704463,0.0007810029],"domain_scores_gemma":[0.9487265,0.026770636,0.007628482,0.004433177,0.011524712,0.0009165218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03551693,0.0022874116,0.0017663336,0.005064002,0.0011943296,0.003683493,0.0016349226,0.0015506357,0.00071682886],"category_scores_gemma":[0.07725177,0.00059385475,0.00092414644,0.005244575,0.0013035684,0.0029754683,0.0024169672,0.0015768147,0.0007681165],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018657956,0.000915172,0.0742957,0.0034264156,0.00078435655,0.0006141608,0.0010812092,0.1396948,0.17855994,0.031082297,0.011548135,0.556132],"study_design_scores_gemma":[0.00013669564,0.005335022,0.06511116,0.00069789385,0.00055191474,0.0026545962,0.0006489626,0.55843043,0.2848245,0.037644293,0.043243136,0.0007214475],"about_ca_topic_score_codex":0.0022224595,"about_ca_topic_score_gemma":0.001311418,"teacher_disagreement_score":0.03551693,"about_ca_system_score_codex":0.0030476623,"about_ca_system_score_gemma":0.0020265307,"threshold_uncertainty_score":0.18783373},"labels":[],"label_agreement":null},{"id":"W2013203040","doi":"10.1074/mcp.h700002-mcp200","title":"The HUPO World Congress at Long Beach, 2006","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Political science","score_opus":0.004939440185922066,"score_gpt":0.21130895289426593,"score_spread":0.20636951270834386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013203040","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007074409,0.017192204,0.0018957683,0.09939851,0.07215498,0.00034994955,0.00520298,0.0007993163,0.7959319],"genre_scores_gemma":[0.0060579353,0.0022548866,0.0005641863,0.005245004,0.0025714093,0.00008672234,0.001206096,0.00012252318,0.9818912],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994752,0.00006731482,0.000014007306,0.00008544724,0.00019863782,0.00015937178],"domain_scores_gemma":[0.9991155,0.000060107523,0.00005220285,0.00003508168,0.00029267836,0.00044451497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012993847,0.00087466143,0.00034714155,0.0007100587,0.0032692822,0.0046925023,0.00076925737,0.0023586047,0.20123774],"category_scores_gemma":[0.0012360605,0.000270724,0.00040154305,0.00057559425,0.00067796785,0.0018260655,0.0024242292,0.003223483,0.0697002],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000073355004,0.00004166632,0.00021903538,0.000057436057,0.0000034255202,0.00008790461,0.00003572263,0.000038256614,0.00019467983,0.0017969544,0.9779955,0.019456137],"study_design_scores_gemma":[0.0000050800923,0.0000121639705,0.0007764026,0.00005067814,0.0000013310018,0.000020340727,0.00007833465,0.000026097468,0.00009206201,0.00020209659,0.9987312,0.0000042889856],"about_ca_topic_score_codex":0.012043233,"about_ca_topic_score_gemma":0.047053654,"teacher_disagreement_score":0.20123774,"about_ca_system_score_codex":0.0023201958,"about_ca_system_score_gemma":0.0037344603,"threshold_uncertainty_score":0.6732073},"labels":[],"label_agreement":null},{"id":"W2030062212","doi":"10.1074/mcp.m700271-mcp200","title":"The Tale of Two Domains","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":197,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Chromatin immunoprecipitation; Histone methyltransferase; Methyltransferase; Histone methylation; Immunoprecipitation; Histone; Histone code; Histone H3; Chromatin; EZH2; Cell biology; Interactome; Chemistry; Methylation; Chromatin remodeling; Biology; Genetics; Gene; DNA methylation; Gene expression; Promoter; Nucleosome","score_opus":0.005479053044670571,"score_gpt":0.24690162093387366,"score_spread":0.24142256788920308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030062212","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2011413,0.049193844,0.2901312,0.02868284,0.014713611,0.000758834,0.004203021,0.025167732,0.38600758],"genre_scores_gemma":[0.5732247,0.010195753,0.087484285,0.010408176,0.0014845454,0.0005317604,0.005425862,0.0015104366,0.3097344],"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.999516,0.000075046846,0.000024896315,0.00013767953,0.00014783061,0.00009845341],"domain_scores_gemma":[0.999608,0.000045132532,0.000046285153,0.00006731638,0.0000686687,0.00016473926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040247277,0.00077238766,0.0007891159,0.00071096234,0.0019479768,0.003057225,0.0017608375,0.001908475,0.038672253],"category_scores_gemma":[0.0012991811,0.0006576048,0.00090570067,0.00071201904,0.0013917225,0.002577017,0.004244206,0.002194567,0.024767399],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060090696,0.00019706223,0.0034890147,0.0018132189,0.00045155984,0.005014646,0.0033209268,0.002524998,0.26105952,0.24512671,0.17106245,0.305339],"study_design_scores_gemma":[0.000059592552,0.00018952656,0.002428213,0.00022199695,0.000104872735,0.0027645153,0.00095251156,0.002405987,0.01825551,0.031190954,0.9413419,0.000084519204],"about_ca_topic_score_codex":0.0009509596,"about_ca_topic_score_gemma":0.00057180953,"teacher_disagreement_score":0.038672253,"about_ca_system_score_codex":0.0008047455,"about_ca_system_score_gemma":0.0009093103,"threshold_uncertainty_score":0.12937152},"labels":[],"label_agreement":null},{"id":"W2035901782","doi":"10.1074/mcp.m100022-mcp200","title":"Application of Microfluidic Devices to Proteomics Research","year":2002,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Institute for Biological Sciences","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Proteomics; Microfluidics; Computer science; Computational biology; Nanotechnology; Chemistry; Data science; Biology; Materials science; Biochemistry","score_opus":0.02714834231446357,"score_gpt":0.30043954812715085,"score_spread":0.2732912058126873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035901782","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06901943,0.16340505,0.72536165,0.0038157778,0.005699485,0.0010606218,0.001738152,0.0043007857,0.025599105],"genre_scores_gemma":[0.31819162,0.10231644,0.5649349,0.002502309,0.0015984854,0.0017034858,0.0012026728,0.00016645419,0.0073835896],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991697,0.00017773434,0.000071768445,0.00021518988,0.00029912672,0.000066528955],"domain_scores_gemma":[0.9995425,0.00024547466,0.000046733723,0.00006056653,0.00007261825,0.000032227348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096003455,0.00074408005,0.00050115015,0.0009960429,0.00048319943,0.001194065,0.0008843755,0.00064581574,0.0014236504],"category_scores_gemma":[0.0011059906,0.00049131305,0.0005080529,0.0005471715,0.00065475184,0.0006422379,0.0012148769,0.00085031206,0.0005689353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013196835,0.00010551962,0.0013221254,0.0027069524,0.00015062178,0.0004792455,0.00030496682,0.0026039993,0.72622734,0.037313983,0.007153436,0.22149989],"study_design_scores_gemma":[0.00010645084,0.0005162678,0.002107364,0.0005279893,0.00015372061,0.0016771049,0.00010933981,0.0127019,0.6012902,0.016023466,0.3646387,0.00014752071],"about_ca_topic_score_codex":0.00027110524,"about_ca_topic_score_gemma":0.0002470022,"teacher_disagreement_score":0.0014236504,"about_ca_system_score_codex":0.00081075187,"about_ca_system_score_gemma":0.0007125985,"threshold_uncertainty_score":0.0058825016},"labels":[],"label_agreement":null},{"id":"W2037614468","doi":"10.1074/mcp.m400149-mcp200","title":"A Universal Strategy for Proteomic Studies of SUMO and Other Ubiquitin-like Modifiers","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":218,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; National Cancer Institute; School of Medicine, New York University; York University","keywords":"SUMO protein; SUMO enzymes; Ubiquitin; Biology; Proteolysis; Transfection; Proteomics; Cell biology; Function (biology); Chemistry; Biochemistry; Computational biology; Gene; Enzyme","score_opus":0.0314832729942285,"score_gpt":0.2731628160711708,"score_spread":0.24167954307694234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037614468","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.44746697,0.005116937,0.5387633,0.0004822614,0.00024960146,0.00091479794,0.0022268791,0.0013233732,0.0034559143],"genre_scores_gemma":[0.50722253,0.0087052835,0.4691471,0.0005580562,0.000092043934,0.0017192103,0.0050730687,0.00040662746,0.0070760767],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954957,0.000059901708,0.000059909595,0.00013076015,0.00012494308,0.0000748114],"domain_scores_gemma":[0.9997359,0.000034829223,0.000048454232,0.00008237989,0.000052825348,0.00004559244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006663634,0.0009153613,0.00072162325,0.00074177055,0.00047203145,0.0005214814,0.00059316884,0.0005187604,0.0007799828],"category_scores_gemma":[0.00035861728,0.0004665858,0.00064606935,0.0006212069,0.0004417279,0.0006867681,0.0010664993,0.0012168597,0.0008938889],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015754416,0.000010775901,0.000046191846,0.00002736043,0.0000062701706,0.000026575628,0.000009416492,0.00001838419,0.9983961,0.00014920058,0.000025193618,0.0012687745],"study_design_scores_gemma":[0.000008487818,0.00011358135,0.0011587512,0.000007708034,0.000025491021,0.0004999031,0.000011004163,0.0004461917,0.99211144,0.000163976,0.0054443446,0.000009015353],"about_ca_topic_score_codex":0.00028355877,"about_ca_topic_score_gemma":0.00058263866,"teacher_disagreement_score":0.0009153613,"about_ca_system_score_codex":0.00034791333,"about_ca_system_score_gemma":0.00051390065,"threshold_uncertainty_score":0.0035241246},"labels":[],"label_agreement":null},{"id":"W2041761690","doi":"10.1074/mcp.m800327-mcp200","title":"Artifactual Sulfation of Silver-stained Proteins","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"National Cancer Institute; Association pour la Recherche sur le Cancer","keywords":"Sulfation; Chemistry; Biochemistry; Biophysics; Biology","score_opus":0.010861921951842048,"score_gpt":0.21441669594985263,"score_spread":0.20355477399801059,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041761690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8664079,0.003635195,0.12222267,0.0003750372,0.00027935198,0.00009572386,0.0002900012,0.0010418039,0.0056523527],"genre_scores_gemma":[0.90884966,0.003668463,0.0759221,0.0004921377,0.00006049366,0.00009995362,0.000874697,0.00037908892,0.009653353],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917585,0.00015279348,0.00008044912,0.00019121038,0.00030950227,0.000090242174],"domain_scores_gemma":[0.99875546,0.0002786969,0.00038995783,0.00021383235,0.00027313214,0.000088913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001231461,0.0010620023,0.00047817946,0.00095887133,0.00053914887,0.0007649857,0.0004977875,0.0005412292,0.0014693743],"category_scores_gemma":[0.0011204446,0.00038584007,0.00037727822,0.0005517203,0.0007543435,0.00045457386,0.00055360515,0.0007980623,0.00070594595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008614621,0.000012096025,0.00087222876,0.00009877446,0.000018217603,0.00028250512,0.00008500449,0.000041002284,0.99493754,0.00023946054,0.00007544983,0.0032515738],"study_design_scores_gemma":[0.0000046108375,0.00011940884,0.005154651,0.000014236879,0.000025965524,0.0011810963,0.00007736276,0.0007837818,0.9895822,0.0004561901,0.0025931548,0.00000736481],"about_ca_topic_score_codex":0.0005090907,"about_ca_topic_score_gemma":0.001172231,"teacher_disagreement_score":0.0014693743,"about_ca_system_score_codex":0.00029886403,"about_ca_system_score_gemma":0.00035705115,"threshold_uncertainty_score":0.006512642},"labels":[],"label_agreement":null},{"id":"W2042850156","doi":"10.1074/mcp.r800016-mcp200","title":"MALDI Imaging Mass Spectrometry","year":2009,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":174,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Institut National Du Cancer; Centre National de la Recherche Scientifique","keywords":"Proteomics; Biomarker discovery; Biomarker; Profiling (computer programming); Mass spectrometry imaging; MALDI imaging; Computational biology; Computer science; Mass spectrometry; Bioinformatics; Medicine; Chemistry; Biology; Matrix-assisted laser desorption/ionization","score_opus":0.01316427819195268,"score_gpt":0.27255950622407604,"score_spread":0.25939522803212334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042850156","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006560233,0.6473033,0.24867043,0.0054273726,0.0051600477,0.00052761985,0.0013043446,0.0028665315,0.08218006],"genre_scores_gemma":[0.04571691,0.6996528,0.16905491,0.003785009,0.0017692648,0.00062083884,0.0019221384,0.00026018935,0.07721795],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988827,0.00015026539,0.000045118497,0.00023567198,0.0006214524,0.00006479861],"domain_scores_gemma":[0.9995415,0.000108334265,0.00005558639,0.000040725703,0.00021631643,0.000037519636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012482634,0.0019481231,0.0014766777,0.0028351168,0.0006730821,0.0014411386,0.0027167175,0.0023278045,0.007932821],"category_scores_gemma":[0.0010942343,0.0005632213,0.00047701466,0.0024282618,0.0009281876,0.0020641084,0.0013860493,0.0022568936,0.016299924],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017652598,0.0001626381,0.00044844963,0.004522504,0.00013284989,0.0007015003,0.00014004072,0.00071046955,0.22135594,0.018232128,0.07449042,0.67892647],"study_design_scores_gemma":[0.000023776378,0.00011010379,0.00068387215,0.00028826998,0.000032042735,0.0029602868,0.00007215133,0.0019632983,0.12347329,0.0048770932,0.86544126,0.00007460547],"about_ca_topic_score_codex":0.000484371,"about_ca_topic_score_gemma":0.0006217936,"teacher_disagreement_score":0.007932821,"about_ca_system_score_codex":0.00091144885,"about_ca_system_score_gemma":0.0007071613,"threshold_uncertainty_score":0.026537895},"labels":[],"label_agreement":null},{"id":"W2046338433","doi":"10.1074/mcp.m500393-mcp200","title":"Proteomic Analysis of Ischemia-Reperfusion Injury upon Human Liver Transplantation Reveals the Protective Role of IQGAP1","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"","keywords":"IQGAP1; Liver transplantation; Transplantation; Ischemia; Reperfusion injury; Medicine; Pathology; Cell biology; Biology; Internal medicine; Signal transduction","score_opus":0.004570875631707162,"score_gpt":0.21427284374213582,"score_spread":0.20970196811042865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046338433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99330854,0.0021223049,0.0022017227,0.00010528632,0.00002043928,0.00001895652,0.0014079089,0.000040725034,0.0007740561],"genre_scores_gemma":[0.9868956,0.0022391635,0.004118772,0.00016280715,0.000016392665,0.000050408667,0.004779078,0.00002516402,0.0017125818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994886,0.0000049132573,0.000003359208,0.000015677057,0.00001515312,0.000012048582],"domain_scores_gemma":[0.99996793,0.00000403682,0.000008353493,0.0000029046498,0.000007103039,0.00000964269],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000106587715,0.0002849792,0.00023398476,0.00035212375,0.00014824487,0.00021464139,0.00011017946,0.00019080735,0.0007673589],"category_scores_gemma":[0.00009987077,0.00008015463,0.00023040411,0.00028072463,0.000096624164,0.00014469202,0.00017266012,0.00027850107,0.0002856195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013374341,0.000010211284,0.0009875733,0.000044247172,0.000009476779,0.00007003928,0.000019824942,0.000032877382,0.9969336,0.000026229987,0.000051630188,0.0016805717],"study_design_scores_gemma":[0.000017981443,0.00040171153,0.26665682,0.000025180872,0.00011613797,0.0018177293,0.00023014667,0.0027667992,0.7221701,0.00015112068,0.0056257755,0.000020580448],"about_ca_topic_score_codex":0.0003520321,"about_ca_topic_score_gemma":0.0003550023,"teacher_disagreement_score":0.0007673589,"about_ca_system_score_codex":0.00012912576,"about_ca_system_score_gemma":0.00012206234,"threshold_uncertainty_score":0.0025670528},"labels":[],"label_agreement":null},{"id":"W2047559912","doi":"10.1074/mcp.m000153-mcp201","title":"Studies of Phosphoproteomic Changes Induced by Nucleophosmin-Anaplastic Lymphoma Kinase (ALK) Highlight Deregulation of Tumor Necrosis Factor (TNF)/Fas/TNF-related Apoptosis-induced Ligand Signaling Pathway in ALK-positive Anaplastic Large Cell Lymphoma","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Anaplastic lymphoma kinase; Anaplastic large-cell lymphoma; Cancer research; Tyrosine kinase; Signal transduction; Tumor necrosis factor alpha; Biology; Nucleophosmin; Chemistry; Cell biology; Lymphoma; Immunology; Medicine; Internal medicine","score_opus":0.00991259370227219,"score_gpt":0.22123609425851481,"score_spread":0.21132350055624263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047559912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99297935,0.0022376503,0.002056401,0.00006303104,0.000025870278,0.000025991305,0.001826241,0.00005844765,0.00072703394],"genre_scores_gemma":[0.98796403,0.002284143,0.005337328,0.00010072594,0.000016969127,0.00007918044,0.002418436,0.000024227911,0.0017749522],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992394,0.000006269509,0.0000054919965,0.00002290358,0.00001963347,0.000021761327],"domain_scores_gemma":[0.9999263,0.000009752005,0.000030205047,0.000003362934,0.000009201035,0.000021211548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000114531635,0.00029832684,0.00019631717,0.0006351171,0.0001746737,0.00022406745,0.00011839974,0.00021831843,0.0012924955],"category_scores_gemma":[0.00010720135,0.00011726055,0.0002950654,0.000557415,0.00014248361,0.00020630579,0.00018479196,0.00028572627,0.00026179865],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017110074,0.00001379195,0.0010986694,0.000055325756,0.000016819853,0.0000896582,0.000022708955,0.000033433687,0.99742067,0.00003295379,0.000040362083,0.0010045274],"study_design_scores_gemma":[0.000027969585,0.00038093867,0.19019608,0.000017202072,0.00013186526,0.001889562,0.0001963951,0.0021420233,0.80129063,0.00017983736,0.0035263172,0.000021250802],"about_ca_topic_score_codex":0.00044163395,"about_ca_topic_score_gemma":0.00072619715,"teacher_disagreement_score":0.0012924955,"about_ca_system_score_codex":0.0001722349,"about_ca_system_score_gemma":0.000090884525,"threshold_uncertainty_score":0.00432384},"labels":[],"label_agreement":null},{"id":"W2048557976","doi":"10.1074/mcp.m111.009431","title":"Fourier Transform Mass Spectrometry","year":2011,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":217,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada)","funders":"","keywords":"Mass spectrometry; Ion-mobility spectrometry–mass spectrometry; Chemistry; Mass spectrometry imaging; Chromatography; Analytical Chemistry (journal); Tandem mass spectrometry; Selected reaction monitoring","score_opus":0.02217234720299775,"score_gpt":0.2667015882448231,"score_spread":0.24452924104182536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048557976","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0041764122,0.40201652,0.49532172,0.0034805275,0.0071520684,0.00047252834,0.0031906846,0.0068067024,0.077382855],"genre_scores_gemma":[0.046432003,0.4379393,0.3856763,0.003919336,0.003282601,0.00091264315,0.0060002767,0.0012644867,0.114573106],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99811506,0.00022081597,0.00009231194,0.00037424438,0.0010830136,0.00011462109],"domain_scores_gemma":[0.9994642,0.00013147734,0.000050914263,0.00006584806,0.0002505108,0.000037052007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013123532,0.001581799,0.0019004026,0.0033553408,0.0009624587,0.0018956594,0.0027155406,0.0020253488,0.01864555],"category_scores_gemma":[0.0016909239,0.0006714173,0.0007636772,0.0035336826,0.0008664824,0.0024334698,0.0023686003,0.0031570797,0.028658826],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015448108,0.00012043178,0.00039843697,0.0040454827,0.00018018724,0.00065388455,0.00017918118,0.0012389314,0.0849992,0.031716794,0.09959767,0.77671534],"study_design_scores_gemma":[0.000012768518,0.00006333435,0.00029924093,0.00027337973,0.000025631964,0.0015906341,0.000042307543,0.0019578852,0.035413306,0.009266852,0.9509836,0.00007100204],"about_ca_topic_score_codex":0.0007439382,"about_ca_topic_score_gemma":0.00079480466,"teacher_disagreement_score":0.01864555,"about_ca_system_score_codex":0.00089206,"about_ca_system_score_gemma":0.0010196791,"threshold_uncertainty_score":0.062375605},"labels":[],"label_agreement":null},{"id":"W2057349649","doi":"10.1074/mcp.h800011-mcp200","title":"Meeting Report on the 7th World Congress of the Human Proteome Organization (HUPO) in Amsterdam","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Human proteome project; Proteome; Library science; Political science; Computational biology; Biology; Bioinformatics; Proteomics; Computer science; Genetics","score_opus":0.012423693369840155,"score_gpt":0.23711739624769776,"score_spread":0.22469370287785762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057349649","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007909823,0.05203276,0.0036043292,0.12641379,0.34513482,0.0014314463,0.010546502,0.0009591876,0.45196745],"genre_scores_gemma":[0.012001674,0.0177256,0.0020165893,0.015157355,0.035474088,0.00076226477,0.008973678,0.00057024334,0.90731865],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979388,0.00030845506,0.00012538148,0.00037573522,0.00078724924,0.00046430036],"domain_scores_gemma":[0.997889,0.00013170097,0.0001231951,0.00006587275,0.0007377078,0.0010525639],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033190693,0.0015781102,0.000822297,0.0015336521,0.0018096596,0.0051888567,0.0012309572,0.0037411437,0.17595886],"category_scores_gemma":[0.002339833,0.00039289275,0.00095667853,0.0010842269,0.00046107045,0.0025521114,0.004351795,0.003221025,0.07405759],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009437686,0.000053261636,0.00034253724,0.00027114997,0.000014052693,0.00021278865,0.00008985574,0.000047697045,0.0006087832,0.0010297863,0.97357684,0.023658901],"study_design_scores_gemma":[0.000010205826,0.000026753076,0.0009597655,0.00010800621,0.0000052414234,0.00004590855,0.00014618452,0.000018971457,0.000107604836,0.00015318969,0.99841154,0.0000065695795],"about_ca_topic_score_codex":0.0035816245,"about_ca_topic_score_gemma":0.006875776,"teacher_disagreement_score":0.17595886,"about_ca_system_score_codex":0.0015863775,"about_ca_system_score_gemma":0.003967826,"threshold_uncertainty_score":0.58864105},"labels":[],"label_agreement":null},{"id":"W2057498926","doi":"10.1074/mcp.m900517-mcp200","title":"Establishment of a Protein Frequency Library and Its Application in the Reliable Identification of Specific Protein Interaction Partners","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"Identification (biology); Computational biology; Computer science; Biology","score_opus":0.008984809830665165,"score_gpt":0.2465622542304075,"score_spread":0.23757744439974235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057498926","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06945502,0.0012424461,0.89480025,0.0006984135,0.00042616238,0.003285828,0.0073463432,0.008876128,0.013869426],"genre_scores_gemma":[0.12890036,0.0026640901,0.80018467,0.0010515423,0.00020319204,0.007147717,0.030601315,0.0032000681,0.026046991],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99666613,0.00060409494,0.00029691707,0.00080448,0.0012476861,0.0003807148],"domain_scores_gemma":[0.9970475,0.00072723476,0.00018792467,0.0007590841,0.00096385914,0.00031443138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037638848,0.0013602978,0.002070276,0.0043514376,0.0021722422,0.0019049766,0.0017720644,0.0014598005,0.008504304],"category_scores_gemma":[0.0049902373,0.0013042763,0.0021651376,0.004106917,0.001144028,0.0013720981,0.0019717284,0.0025878465,0.01315197],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047691472,0.0004431446,0.0018657235,0.0004673176,0.00009162387,0.00032718544,0.00016251743,0.0013390471,0.91415817,0.004251972,0.0047217393,0.071694635],"study_design_scores_gemma":[0.00016497093,0.00086260086,0.0077525727,0.00009483182,0.0002651563,0.0014581219,0.00013709726,0.017951488,0.8762611,0.002687194,0.092195645,0.00016930253],"about_ca_topic_score_codex":0.0022308507,"about_ca_topic_score_gemma":0.003462691,"teacher_disagreement_score":0.008504304,"about_ca_system_score_codex":0.0010609233,"about_ca_system_score_gemma":0.0017623461,"threshold_uncertainty_score":0.028449714},"labels":[],"label_agreement":null},{"id":"W2060769471","doi":"10.1074/mcp.m111.009993","title":"The Human Proteome Project: Current State and Future Direction","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":356,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Victoria; McGill University","funders":"","keywords":"Current (fluid); Proteome; State (computer science); Computational biology; Human proteome project; Data science; Computer science; Proteomics; Chemistry; Biology; Bioinformatics; Engineering; Biochemistry; Electrical engineering","score_opus":0.01490619823095905,"score_gpt":0.2578159499142334,"score_spread":0.24290975168327436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060769471","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0059192427,0.47709718,0.017973581,0.45985225,0.01312421,0.00046576277,0.0044274665,0.0019121523,0.019228252],"genre_scores_gemma":[0.043271236,0.72416437,0.116961874,0.066571884,0.013810647,0.0014609371,0.02389494,0.0006475701,0.009216533],"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9930466,0.0024991005,0.00064753153,0.0009429105,0.0021048703,0.0007589241],"domain_scores_gemma":[0.96912384,0.008335451,0.0015909974,0.0015022805,0.008212345,0.011235108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.059742495,0.0014084231,0.0015972789,0.0028351154,0.0017541227,0.009028489,0.0037767857,0.006054353,0.010294105],"category_scores_gemma":[0.023359742,0.0005564608,0.0012135498,0.0052745193,0.0039248792,0.014838387,0.00647413,0.00613712,0.006400029],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014469299,0.00035886504,0.005359092,0.0058255726,0.00012616256,0.00023902456,0.00038666758,0.0008159233,0.0012716207,0.030559437,0.21983075,0.7337799],"study_design_scores_gemma":[0.00020256895,0.00050159683,0.005355384,0.0042125126,0.00010421302,0.0003922674,0.00091321307,0.0013808858,0.0008233435,0.02369406,0.9623123,0.00010759987],"about_ca_topic_score_codex":0.0054295124,"about_ca_topic_score_gemma":0.0034236491,"teacher_disagreement_score":0.059742495,"about_ca_system_score_codex":0.0032981513,"about_ca_system_score_gemma":0.027137019,"threshold_uncertainty_score":0.3159523},"labels":[],"label_agreement":null},{"id":"W2061227815","doi":"10.1074/mcp.o112.024372","title":"The DegraBase: A Database of Proteolysis in Healthy and Apoptotic Human Cells","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of California, San Francisco; National Center for Research Resources; National Institute of General Medical Sciences; Directorate for Biological Sciences; National Cancer Institute; National Science Foundation; National Institutes of Health; Government of Canada; Rogers Family Foundation","keywords":"Proteolysis; Apoptosis; Chemistry; Cell biology; Computational biology; Database; Biology; Biochemistry; Computer science; Enzyme","score_opus":0.012393348274519869,"score_gpt":0.2475781251819766,"score_spread":0.23518477690745673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061227815","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14594784,0.023438027,0.017289294,0.00035693072,0.00014149252,0.00038333124,0.7973041,0.00804322,0.007095776],"genre_scores_gemma":[0.059291884,0.00570261,0.031904113,0.00025290283,0.000040049395,0.0002616954,0.90068895,0.0004268124,0.0014310864],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991473,0.00010677167,0.0002538739,0.00017366042,0.00023051136,0.00008802336],"domain_scores_gemma":[0.9986576,0.00028641976,0.0003338131,0.0002093081,0.000308445,0.00020440333],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008452994,0.0014000769,0.001083595,0.004814306,0.00041490822,0.0009827197,0.00097155257,0.0010388705,0.0033720294],"category_scores_gemma":[0.0020708377,0.0003045825,0.0005894992,0.0051665497,0.00021640515,0.00086457195,0.0010653,0.0007423483,0.0056717633],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009836943,0.00086190033,0.066915,0.01602437,0.0006383738,0.0054776496,0.0012838225,0.0029763493,0.38630867,0.0027305277,0.1816744,0.32527196],"study_design_scores_gemma":[0.0003994529,0.0009932104,0.103804395,0.0008763455,0.00040686224,0.012768049,0.0005925628,0.0043365145,0.09717623,0.0023799513,0.77608716,0.00017918523],"about_ca_topic_score_codex":0.00078995025,"about_ca_topic_score_gemma":0.001078904,"teacher_disagreement_score":0.004814306,"about_ca_system_score_codex":0.000374564,"about_ca_system_score_gemma":0.0009677376,"threshold_uncertainty_score":0.011280596},"labels":[],"label_agreement":null},{"id":"W2061678926","doi":"10.1074/mcp.m114.041764","title":"Integrated Omic Analysis of Oropharyngeal Carcinomas Reveals Human Papillomavirus (HPV)–dependent Regulation of the Activator Protein 1 (AP-1) Pathway","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto; University Health Network; Princess Margaret Cancer Centre","funders":"Canadian Institutes of Health Research","keywords":"Activator (genetics); Human papillomavirus; Cancer research; Virology; Biology; Chemistry; Gene; Medicine; Genetics; Internal medicine","score_opus":0.006791220499449827,"score_gpt":0.21164855978694022,"score_spread":0.2048573392874904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061678926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9700912,0.0065034432,0.005563926,0.00025746424,0.000040640683,0.000042743497,0.0154869985,0.00027118696,0.0017424045],"genre_scores_gemma":[0.95971215,0.0032582441,0.01091992,0.00018389577,0.00003352362,0.000089131565,0.024654685,0.00007051048,0.0010778839],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996257,0.000039328916,0.000034335433,0.00013352085,0.0001014951,0.00006559006],"domain_scores_gemma":[0.99970454,0.0000578558,0.00010379242,0.000035722296,0.00006661492,0.00003144923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040428547,0.00042420288,0.00060983456,0.0022440772,0.00034718425,0.001066799,0.00021177508,0.00025984333,0.00086457527],"category_scores_gemma":[0.0005466635,0.00013632487,0.00058018765,0.0021654447,0.0001558603,0.0003258913,0.0007621043,0.00036920843,0.00031861677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001404284,0.00016444012,0.20669247,0.0013666052,0.0010538746,0.00087304803,0.00044959484,0.0015110634,0.7184037,0.00064652594,0.002304993,0.065129444],"study_design_scores_gemma":[0.000031126936,0.00028215256,0.9191762,0.00009075961,0.00080705225,0.0014155079,0.00058147113,0.011043174,0.053314164,0.0013698537,0.011841001,0.000047532485],"about_ca_topic_score_codex":0.0013155933,"about_ca_topic_score_gemma":0.0018508213,"teacher_disagreement_score":0.0022440772,"about_ca_system_score_codex":0.00032562795,"about_ca_system_score_gemma":0.00041520412,"threshold_uncertainty_score":0.0028922558},"labels":[],"label_agreement":null},{"id":"W2061751482","doi":"10.1074/mcp.m800313-mcp200","title":"Mining the Ovarian Cancer Ascites Proteome for Potential Ovarian Cancer Biomarkers","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Mount Sinai Hospital","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ovarian cancer; Biomarker; Proteome; Biomarker discovery; Proteomics; Cancer biomarkers; Ascites; Cancer; Quantitative proteomics; Bioinformatics; Computational biology; Chemistry; Medicine; Biology; Internal medicine; Biochemistry","score_opus":0.014437308113797,"score_gpt":0.25989876105818344,"score_spread":0.24546145294438643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061751482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97409827,0.0024918143,0.021700913,0.00027212306,0.000014772889,0.000097575765,0.0006677136,0.00014227333,0.0005144989],"genre_scores_gemma":[0.91022766,0.0021896102,0.08323994,0.00013424557,0.000026542157,0.000089073255,0.003250607,0.000027033717,0.0008151861],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998827,0.000024530014,0.000011920433,0.000027801558,0.000035853864,0.000017166554],"domain_scores_gemma":[0.9997422,0.00008285165,0.000060430688,0.000014701767,0.000070503964,0.000029223096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038470075,0.00040186144,0.0006597243,0.0009812064,0.00037605473,0.00067003275,0.00026130638,0.00042152728,0.00039473947],"category_scores_gemma":[0.000985126,0.00014114166,0.0004216155,0.0010673602,0.00011810499,0.00046944123,0.0002154055,0.00026407163,0.00035819717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002525014,0.00008813967,0.022420874,0.00023065378,0.000048373764,0.00044221312,0.000094719086,0.0012248629,0.94473904,0.00020776218,0.0003717857,0.029879028],"study_design_scores_gemma":[0.00009330341,0.00065200543,0.18683955,0.00006423006,0.00033208876,0.004227285,0.0006376855,0.07320881,0.7160723,0.002881669,0.014924321,0.00006679913],"about_ca_topic_score_codex":0.00066815194,"about_ca_topic_score_gemma":0.0007430642,"teacher_disagreement_score":0.0009812064,"about_ca_system_score_codex":0.00017982333,"about_ca_system_score_gemma":0.00045275412,"threshold_uncertainty_score":0.002034545},"labels":[],"label_agreement":null},{"id":"W2064193137","doi":"10.1074/mcp.m112.021519","title":"Diversity in the Protein N-Glycosylation Pathways Within the Campylobacter Genus","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Alberta Glycomics Centre; University of Alberta","funders":"Alberta Glycomics Centre; Alberta Innovates; Keio University","keywords":"Glycosylation; Campylobacter; Genus; Biology; Diversity (politics); Computational biology; Evolutionary biology; Genetics; Zoology; Bacteria","score_opus":0.03525342072488371,"score_gpt":0.2058130021806743,"score_spread":0.1705595814557906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064193137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953636,0.0015140803,0.0005828099,0.000057763722,0.0000072874404,0.000013847054,0.0003828262,0.000027024818,0.0020508207],"genre_scores_gemma":[0.9965479,0.0006067124,0.0013023892,0.00007812584,0.000004894553,0.000014707996,0.000936061,0.00001024532,0.0004989948],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99971896,0.00003191997,0.000022071008,0.0001099504,0.000051162173,0.00006602635],"domain_scores_gemma":[0.9997249,0.000056556997,0.00004819277,0.0000389657,0.00006034424,0.00007105842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018972068,0.00023016763,0.0002719676,0.0010394506,0.0003744772,0.00050673494,0.00023283242,0.0003540431,0.0006580602],"category_scores_gemma":[0.0005073437,0.0001871084,0.00024005029,0.00061558007,0.00032226808,0.0003272397,0.000596995,0.00027677682,0.00021902629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067427766,0.0000712825,0.11096273,0.0003206445,0.00013891794,0.00044263664,0.0011066545,0.0004679029,0.85070264,0.00045530414,0.00031353222,0.034343418],"study_design_scores_gemma":[0.000018515502,0.0003186405,0.9715246,0.00010861999,0.000096599775,0.0015144593,0.0010319873,0.0010303376,0.015577817,0.0007601922,0.0079759,0.000042250445],"about_ca_topic_score_codex":0.0020653924,"about_ca_topic_score_gemma":0.0028630826,"teacher_disagreement_score":0.0020653924,"about_ca_system_score_codex":0.00027513402,"about_ca_system_score_gemma":0.00034876962,"threshold_uncertainty_score":0.0041068196},"labels":[],"label_agreement":null},{"id":"W2064860495","doi":"10.1074/mcp.m114.045443","title":"Characterization of the Host Response to Pichinde Virus Infection in the Syrian Golden Hamster by Species-Specific Kinome Analysis","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Kinome; Hamster; Biology; Arenavirus; Lassa virus; Immune system; Cell biology; Virology; Mesocricetus; Signal transduction; Lymphocytic choriomeningitis; Immunology; Virus; Molecular biology","score_opus":0.018625089067828737,"score_gpt":0.23991828705011597,"score_spread":0.22129319798228725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064860495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965205,0.00037717476,0.0020640122,0.000019264118,0.00001102336,0.000024462925,0.0003656191,0.000021646449,0.0005963393],"genre_scores_gemma":[0.994124,0.0004015997,0.003178208,0.000055712928,0.000007500416,0.000058634905,0.0009188563,0.00000971742,0.0012458224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999286,0.000006802152,0.000005739891,0.000018476294,0.000018236724,0.000022168339],"domain_scores_gemma":[0.9999392,0.000010199056,0.00001910604,0.000006730565,0.000009921759,0.000014948241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009135085,0.00020293413,0.00016993737,0.0002170087,0.000094933086,0.00016543148,0.000069858244,0.00016265248,0.00055553793],"category_scores_gemma":[0.000081179314,0.000057048805,0.0001716694,0.00010272783,0.00010428272,0.00013012758,0.00014351678,0.00023079744,0.00016649142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002905871,0.0000036577896,0.00027743925,0.0000075249777,0.0000016055129,0.00001014548,0.00000601826,0.000019090965,0.99940085,0.000013276175,0.00000495822,0.00022639267],"study_design_scores_gemma":[0.000007146351,0.0005304203,0.04096585,0.0000049675214,0.00002188517,0.00018674292,0.000069590205,0.0015459558,0.9555059,0.00005952592,0.001095218,0.0000067711994],"about_ca_topic_score_codex":0.0003428869,"about_ca_topic_score_gemma":0.00057510426,"teacher_disagreement_score":0.00055553793,"about_ca_system_score_codex":0.00015781773,"about_ca_system_score_gemma":0.00007242936,"threshold_uncertainty_score":0.0018584728},"labels":[],"label_agreement":null},{"id":"W2067178867","doi":"10.1074/mcp.m900148-mcp200","title":"Epidermal Growth Factor Receptor Phosphorylation Sites Ser991 and Tyr998 Are Implicated in the Regulation of Receptor Endocytosis and Phosphorylations at Ser1039 and Thr1041","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Endocytosis; Epidermal growth factor receptor; Phosphorylation; Cell biology; Receptor-mediated endocytosis; Cancer research; Chemistry; Growth factor receptor; Receptor; Signal transduction; Biology; Biochemistry","score_opus":0.012035275955379931,"score_gpt":0.240396387623661,"score_spread":0.22836111166828107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067178867","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9835824,0.0071534747,0.0051755,0.00017056086,0.000056792298,0.00003232541,0.0010468337,0.00013183642,0.0026503704],"genre_scores_gemma":[0.98398167,0.0041897492,0.0046517975,0.00007868601,0.000016394297,0.000021857986,0.0015604538,0.00001553527,0.0054838737],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988747,0.0000122243755,0.0000081602075,0.0000296513,0.000043128817,0.000019428782],"domain_scores_gemma":[0.99993217,0.0000046369387,0.000039957533,0.0000034774803,0.000008106283,0.000011644297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010094524,0.0004241677,0.00021395831,0.00023332998,0.00019545635,0.0003290476,0.00018274224,0.00024681998,0.0018401624],"category_scores_gemma":[0.000090433154,0.000120130746,0.00028859184,0.00027674407,0.00019080025,0.00020838597,0.00015918125,0.00037006047,0.0007206825],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019888039,0.00001835727,0.00092642236,0.000053534313,0.000011129766,0.00020036932,0.000006511007,0.00006404561,0.9931005,0.00010773764,0.00010941203,0.005203049],"study_design_scores_gemma":[0.00001583433,0.00015610852,0.032475136,0.000013460085,0.000026310021,0.0022327441,0.000029311761,0.00089726236,0.95958835,0.00014771067,0.004408615,0.000009173843],"about_ca_topic_score_codex":0.00046577127,"about_ca_topic_score_gemma":0.0005864531,"teacher_disagreement_score":0.0018401624,"about_ca_system_score_codex":0.00030704617,"about_ca_system_score_gemma":0.00013922977,"threshold_uncertainty_score":0.0061559677},"labels":[],"label_agreement":null},{"id":"W2069792833","doi":"10.1074/mcp.m114.046086","title":"Myotubularin-related Proteins 3 and 4 Interact with Polo-like Kinase 1 and Centrosomal Protein of 55 kDa to Ensure Proper Abscission","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute","funders":"Leonard M. Miller School of Medicine; Krembil Foundation; National Institutes of Health; Government of Canada; Canadian Institutes of Health Research; Leonard M. Miller School of Medicine, University of Miami; Genome Canada; Ontario Genomics; National Institute of General Medical Sciences; Ontario Genomics Institute; University of Miami","keywords":"Abscission; Cell biology; Polo-like kinase; Biology; Chemistry; Botany; Biochemistry; Cell cycle; Gene","score_opus":0.005885713061691626,"score_gpt":0.19290165840416312,"score_spread":0.18701594534247148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069792833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928104,0.0013924736,0.004301721,0.00010017942,0.000012808763,0.000023835035,0.00032314577,0.000067570574,0.0009678794],"genre_scores_gemma":[0.9874112,0.00072338874,0.0073731453,0.00012821404,0.000011208115,0.000025824467,0.0013292816,0.000015896252,0.0029819335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997644,0.000026157873,0.000013353816,0.00005530107,0.000083516774,0.000057210604],"domain_scores_gemma":[0.999688,0.000026682439,0.0001911326,0.000021849759,0.000028287343,0.000044070093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022908782,0.00038782108,0.00031136713,0.00043679052,0.00031287313,0.00029502576,0.00027687394,0.00033550122,0.001038216],"category_scores_gemma":[0.0004414107,0.00018252962,0.0005604717,0.00028817778,0.00021633624,0.00025932732,0.00038232727,0.000402656,0.0005291982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017732897,0.000019521309,0.010574815,0.0000458986,0.000040909497,0.00017292752,0.000019653357,0.0002268972,0.984777,0.00016364972,0.00012384955,0.0036575221],"study_design_scores_gemma":[0.0000405084,0.00024602286,0.31617537,0.000017585537,0.00009153816,0.0011637734,0.000087630004,0.0075974553,0.66921985,0.00044438956,0.0048958943,0.000019953835],"about_ca_topic_score_codex":0.0018404251,"about_ca_topic_score_gemma":0.004547864,"teacher_disagreement_score":0.0018404251,"about_ca_system_score_codex":0.0006182251,"about_ca_system_score_gemma":0.00043219083,"threshold_uncertainty_score":0.004485488},"labels":[],"label_agreement":null},{"id":"W2070864575","doi":"10.1074/mcp.m400102-mcp200","title":"Sexual Dimorphism of Rat Liver Nuclear Proteins","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Sexual dimorphism; Biology; Evolutionary biology; Computational biology; Cell biology; Zoology","score_opus":0.008614613708007899,"score_gpt":0.21824131536069627,"score_spread":0.20962670165268837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070864575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99502337,0.0009820784,0.0013791493,0.00008689463,0.000017964756,0.000009939586,0.000674208,0.000056506164,0.0017699315],"genre_scores_gemma":[0.9897704,0.001030273,0.001603596,0.00014095161,0.000015893302,0.000050082635,0.0021267242,0.000045129706,0.005216944],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998622,0.000017933136,0.00001290784,0.0000426705,0.000039190574,0.000025151287],"domain_scores_gemma":[0.99980026,0.000027618624,0.0000662746,0.000019833447,0.0000327791,0.000053214157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015550491,0.00018495307,0.00013724649,0.00050279347,0.00011653679,0.00022267012,0.00011784332,0.0001089611,0.0015742081],"category_scores_gemma":[0.00017292456,0.00012516625,0.00019504565,0.00016352051,0.00018318465,0.00013140416,0.00019270262,0.00021343122,0.00045482613],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012190612,0.000011545159,0.0015658089,0.00001942462,0.0000055984106,0.000054312524,0.000028534512,0.000011191072,0.99630594,0.00006057209,0.00003923121,0.0017760477],"study_design_scores_gemma":[0.00002993731,0.0008056815,0.40123776,0.000020536892,0.00003243775,0.001669852,0.00023985002,0.00045611543,0.59091944,0.00025013238,0.004312324,0.000025852603],"about_ca_topic_score_codex":0.00030156248,"about_ca_topic_score_gemma":0.00054115395,"teacher_disagreement_score":0.0015742081,"about_ca_system_score_codex":0.0001711779,"about_ca_system_score_gemma":0.00013016383,"threshold_uncertainty_score":0.005266309},"labels":[],"label_agreement":null},{"id":"W2071393617","doi":"10.1074/mcp.m800190-mcp200","title":"An Enhanced Mass Spectrometry Approach Reveals Human Embryonic Stem Cell Growth Factors in Culture","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer; McMaster University; Western University","funders":"Canadian Institutes of Health Research; Stem Cell Network","keywords":"Embryonic stem cell; Mass spectrometry; Orbitrap; Fractionation; Chemistry; Peptide; Chromatography; Proteomics; Proteome; Computational biology; Biology; Biochemistry","score_opus":0.013345325146527946,"score_gpt":0.23217481489935995,"score_spread":0.218829489752832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071393617","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80290174,0.0047227326,0.18191178,0.0003930325,0.00013580795,0.00019632623,0.0015473773,0.00090465654,0.007286593],"genre_scores_gemma":[0.7825204,0.0056629307,0.19899113,0.0005650164,0.000076597375,0.0002857635,0.002318793,0.00022062454,0.009358739],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997595,0.000026158395,0.000015381745,0.000075932294,0.00010297111,0.000020083517],"domain_scores_gemma":[0.9998671,0.000038411457,0.000021456794,0.000014057852,0.000043382253,0.000015534395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029235595,0.00044229394,0.00023797492,0.00051093125,0.00018521868,0.0003900814,0.0002730034,0.00032895507,0.00075381174],"category_scores_gemma":[0.00034568465,0.00014778378,0.000209374,0.00033161772,0.00017424353,0.00025332175,0.0002958282,0.0005337971,0.00052235276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017924096,0.000004779137,0.00016908348,0.000012768477,0.0000032863825,0.000031184223,0.000012246765,0.000022037704,0.99751663,0.000046064488,0.000027973945,0.0021359778],"study_design_scores_gemma":[0.0000032430526,0.00006920977,0.0032572134,0.0000051727743,0.000013928915,0.00029894445,0.000021258555,0.0013495052,0.9914922,0.000076312775,0.003407175,0.0000057969687],"about_ca_topic_score_codex":0.0006921742,"about_ca_topic_score_gemma":0.001260856,"teacher_disagreement_score":0.00075381174,"about_ca_system_score_codex":0.00031964973,"about_ca_system_score_gemma":0.0002717724,"threshold_uncertainty_score":0.0025217533},"labels":[],"label_agreement":null},{"id":"W2071394295","doi":"10.1074/mcp.t400023-mcp200","title":"A High Throughput Method for the Detection of Metalloproteins on a Microgram Scale","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Trace Elements in Health","field":"Nursing","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Metalloprotein; Chemistry; Proteome; Context (archaeology); Zinc; Chemiluminescence; Mass spectrometry; Chromatography; Biochemistry; Enzyme; Biology","score_opus":0.012703552213164306,"score_gpt":0.29186134858126417,"score_spread":0.27915779636809984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071394295","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01955498,0.01870546,0.9050928,0.0029008281,0.0038856636,0.0029298684,0.009985458,0.01478701,0.022157896],"genre_scores_gemma":[0.04376193,0.017485796,0.86437434,0.0022502728,0.0008624486,0.0049487287,0.02078878,0.0011501492,0.044377446],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99637896,0.00069109676,0.00027693715,0.00080839754,0.001607062,0.00023748174],"domain_scores_gemma":[0.99804354,0.00055361446,0.0002781986,0.00035690638,0.00054086006,0.0002268329],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021699818,0.0030695947,0.0020147457,0.0060022012,0.0017001923,0.0015684061,0.002664855,0.0025397541,0.018273352],"category_scores_gemma":[0.0026940447,0.0015825296,0.001851046,0.0031972483,0.0010378718,0.0025456243,0.0021027694,0.004691516,0.026035694],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015460789,0.00030121297,0.0010651755,0.0015572512,0.00022145543,0.000391638,0.00012681787,0.00016078255,0.92255914,0.0016232672,0.02252948,0.049309045],"study_design_scores_gemma":[0.00013417688,0.0007983104,0.008831385,0.00046723816,0.0003733771,0.003303981,0.0001933666,0.005244465,0.72097105,0.0021840448,0.25728497,0.00021361519],"about_ca_topic_score_codex":0.00087661797,"about_ca_topic_score_gemma":0.0025925867,"teacher_disagreement_score":0.018273352,"about_ca_system_score_codex":0.00079905044,"about_ca_system_score_gemma":0.0012043947,"threshold_uncertainty_score":0.061130464},"labels":[],"label_agreement":null},{"id":"W2072100156","doi":"10.1074/mcp.m600197-mcp200","title":"Quantitative Comparison of Caste Differences in Honeybee Hemolymph","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Hemolymph; Biology; Eusociality; Organism; Zoology; Larva; Pollination; Caste; Innate immune system; Worker bee; Ecology; Proteomics; Deformed wing virus; Honey bee; Evolutionary biology; Gene; Immune system; Genetics; Hymenoptera; Pollen","score_opus":0.03234787006356091,"score_gpt":0.2629870657852356,"score_spread":0.2306391957216747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072100156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99327636,0.0013386549,0.0025357702,0.000038256865,0.000032565615,0.000014990678,0.0012779548,0.000058884696,0.0014266503],"genre_scores_gemma":[0.9912034,0.00081628334,0.0034742814,0.00008757387,0.000023100638,0.000058245052,0.0021308865,0.00004311143,0.0021630635],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998305,0.000015699557,0.000009582387,0.000062016254,0.000053383505,0.000028880475],"domain_scores_gemma":[0.99969137,0.00007476937,0.00008892837,0.000024503486,0.00005623279,0.00006423517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018530311,0.0002176766,0.00016527837,0.0008768264,0.00020800602,0.0004605598,0.00011780512,0.00025996525,0.00097640057],"category_scores_gemma":[0.00026299825,0.00014868104,0.0002255649,0.000375694,0.00027721465,0.00023618805,0.00023642146,0.00042372517,0.00026419075],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009719024,0.0000140948405,0.006184137,0.00004514506,0.000019431265,0.000051143474,0.000094658666,0.00001614138,0.9903584,0.000040108607,0.000052091596,0.0030275076],"study_design_scores_gemma":[0.000005559104,0.0001748184,0.79638135,0.000012040207,0.00005090311,0.0005170158,0.00029364135,0.0005286999,0.20018837,0.00011097551,0.0017158515,0.00002079764],"about_ca_topic_score_codex":0.00040290056,"about_ca_topic_score_gemma":0.0008893971,"teacher_disagreement_score":0.00097640057,"about_ca_system_score_codex":0.00013131485,"about_ca_system_score_gemma":0.00007181512,"threshold_uncertainty_score":0.0032664537},"labels":[],"label_agreement":null},{"id":"W2072598705","doi":"10.1074/mcp.r500011-mcp200","title":"Integrating Global Proteomic and Genomic Expression Profiles Generated from Islet α Cells","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"Genome Canada","keywords":"Biology; Computational biology; Gene expression profiling; Gene; Proteomics; Gene expression; Islet; Molecular biology; Microarray; Phenotype; Shotgun; Genetics","score_opus":0.007251351722050646,"score_gpt":0.21719633081880588,"score_spread":0.20994497909675522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072598705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9538871,0.00087718974,0.042205695,0.000076032804,0.000022831886,0.000045217228,0.0016995412,0.00017986626,0.0010066068],"genre_scores_gemma":[0.9204278,0.001261239,0.070071526,0.00015302259,0.000040986186,0.00011894258,0.0064794957,0.000086532986,0.0013604017],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99973243,0.00003634005,0.000018028924,0.000105702486,0.000077456556,0.00003008636],"domain_scores_gemma":[0.9997477,0.0000754531,0.00005259203,0.000041907595,0.00004254007,0.000039837505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004702727,0.00039032244,0.00057667,0.0006833047,0.00014037888,0.00054467487,0.00017445847,0.0001864802,0.00056483917],"category_scores_gemma":[0.0005600805,0.0001648355,0.00025947916,0.00074535666,0.00021292127,0.00036060414,0.00045739877,0.00040307848,0.00029870763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115047784,0.000008109592,0.0017489739,0.000031860473,0.000013736044,0.000025851496,0.000013822972,0.00018316698,0.9944231,0.00004549327,0.000017411892,0.0033734208],"study_design_scores_gemma":[0.0000254916,0.00051856396,0.082132824,0.000012573848,0.00018131337,0.0006162732,0.00015372435,0.005800902,0.9070872,0.00063849153,0.0028140298,0.000018504936],"about_ca_topic_score_codex":0.00030197448,"about_ca_topic_score_gemma":0.00056244177,"teacher_disagreement_score":0.0006833047,"about_ca_system_score_codex":0.00018664387,"about_ca_system_score_gemma":0.00015628593,"threshold_uncertainty_score":0.0024870038},"labels":[],"label_agreement":null},{"id":"W2075590318","doi":"10.1074/mcp.m113.037374","title":"An Unbiased Proteomic Screen Reveals Caspase Cleavage Is Positively and Negatively Regulated by Substrate Phosphorylation","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Western University","funders":"National Institute of General Medical Sciences; National Institutes of Health; University of North Carolina at Chapel Hill; National Cancer Institute; Canadian Institutes of Health Research; Heart and Stroke Foundation of Canada","keywords":"Phosphorylation; Cleavage (geology); Cell biology; Caspase; Proteolysis; Protein phosphorylation; Chemistry; Phosphoserine; Proteomics; Biology; Phosphopeptide; Phosphoproteomics; Apoptosis; Biochemistry; Programmed cell death; Enzyme; Protein kinase A; Serine","score_opus":0.005936731345241912,"score_gpt":0.21157400088195838,"score_spread":0.20563726953671646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075590318","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99435365,0.0009670389,0.003183576,0.000043222804,0.0000113116375,0.000024467716,0.0005671402,0.000038438753,0.00081112544],"genre_scores_gemma":[0.98973,0.0014015003,0.005971576,0.000094115916,0.000009170468,0.000042035,0.0014484226,0.000030013913,0.0012731575],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997862,0.00002536587,0.000018293384,0.000055041983,0.000073213596,0.0000419666],"domain_scores_gemma":[0.99984705,0.0000355789,0.00004933131,0.000015417929,0.00002285578,0.000029729385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022656782,0.00032994096,0.0002696493,0.00027226622,0.00017569648,0.00031229973,0.00015925488,0.0002549933,0.0007426176],"category_scores_gemma":[0.00022323026,0.00013775325,0.00025275795,0.00025856716,0.0001557024,0.00018918543,0.00019144884,0.00033462836,0.00033420115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048123453,0.000006139925,0.0002486619,0.000011966166,0.0000038853273,0.000022939146,0.0000032108549,0.000012641636,0.99924326,0.0000117617665,0.000008581392,0.0003787077],"study_design_scores_gemma":[0.000007982432,0.00015986133,0.015001122,0.0000037004163,0.000029293658,0.0004294847,0.000017514245,0.00048239843,0.9830756,0.0000337564,0.00075392233,0.000005311795],"about_ca_topic_score_codex":0.00015948145,"about_ca_topic_score_gemma":0.0004074929,"teacher_disagreement_score":0.0007426176,"about_ca_system_score_codex":0.00017630112,"about_ca_system_score_gemma":0.00015944449,"threshold_uncertainty_score":0.0024843216},"labels":[],"label_agreement":null},{"id":"W2076455322","doi":"10.1074/mcp.m111.014233","title":"Interaction Proteomics Identify NEURL4 and the HECT E3 Ligase HERC2 as Novel Modulators of Centrosome Architecture","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"Krembil Foundation; Canadian Institutes of Health Research; Terry Fox Foundation; Cancer Research Society","keywords":"Centrosome; Biology; Cell biology; Centrosome cycle; Centriole; Microtubule; Genetics; Cancer","score_opus":0.005456606927994162,"score_gpt":0.2298449446366707,"score_spread":0.22438833770867656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076455322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913464,0.002292179,0.0040473817,0.00023959404,0.000009755464,0.000018759583,0.0002841952,0.00007891997,0.001682686],"genre_scores_gemma":[0.99006253,0.00075197633,0.004490494,0.00014590425,0.0000074520703,0.00002204815,0.0006930736,0.00002684643,0.0037997225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982077,0.000025208381,0.000009879721,0.000033911812,0.00007933541,0.00003091916],"domain_scores_gemma":[0.99992037,0.000009921571,0.000024340712,0.000008467178,0.0000142340505,0.00002269914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022744789,0.00029658191,0.00023447182,0.00025885054,0.00024097486,0.0006041598,0.0003902966,0.00047708556,0.0008700167],"category_scores_gemma":[0.00015983297,0.00021919594,0.0002357154,0.00021272237,0.00027081175,0.00028539493,0.0003800845,0.00033526574,0.0004047453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001456457,0.000015345353,0.0010160162,0.000028003495,0.000015228911,0.00010353842,0.000007845446,0.00013730366,0.9970783,0.00015455468,0.000054873748,0.0012434188],"study_design_scores_gemma":[0.00003754186,0.000072859366,0.022827355,0.0000038061899,0.00003066135,0.00065290317,0.00003955089,0.0038465913,0.9684276,0.00013962561,0.003912644,0.000008821816],"about_ca_topic_score_codex":0.0013712973,"about_ca_topic_score_gemma":0.0022813058,"teacher_disagreement_score":0.0015767958,"about_ca_system_score_codex":0.0015767958,"about_ca_system_score_gemma":0.00036066704,"threshold_uncertainty_score":0.0114405155},"labels":[],"label_agreement":null},{"id":"W2077333201","doi":"10.1074/mcp.m600378-mcp200","title":"Endometrial Carcinoma Biomarker Discovery and Verification Using Differentially Tagged Clinical Samples with Multidimensional Liquid Chromatography and Tandem Mass Spectrometry","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Mount Sinai Hospital; University of Toronto; York University","funders":"","keywords":"Biomarker discovery; Chromatography; Tandem mass spectrometry; Mass spectrometry; Liquid chromatography–mass spectrometry; Biomarker; Chemistry; Proteomics","score_opus":0.02267820828143937,"score_gpt":0.2788860935640393,"score_spread":0.25620788528259997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077333201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9584905,0.007827908,0.030415874,0.0006971825,0.00013741267,0.0002924453,0.001056651,0.00021274327,0.00086932664],"genre_scores_gemma":[0.9348473,0.002364464,0.060009193,0.0007282774,0.00007223573,0.00021073654,0.0009989236,0.000020026147,0.0007488629],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847,0.00040208834,0.00020318922,0.00032662315,0.0004661231,0.00013191244],"domain_scores_gemma":[0.99931514,0.00019123667,0.00015268222,0.00009145966,0.00020189026,0.000047566085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024118046,0.00046582587,0.00070679816,0.0018313628,0.00042578674,0.0011254621,0.0005182254,0.0008335122,0.0003299655],"category_scores_gemma":[0.0025494862,0.00022152344,0.0004844264,0.0011593595,0.00043829036,0.00034441423,0.00048337193,0.0007384599,0.00027708625],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016627423,0.00027789467,0.10693728,0.00030064548,0.0002215204,0.0010191766,0.00026328085,0.000878694,0.8429573,0.00048244273,0.00047118223,0.044527844],"study_design_scores_gemma":[0.00023523024,0.0012427161,0.18190184,0.00008813315,0.00044840653,0.0044332873,0.0004810693,0.022930155,0.7803275,0.0011478582,0.0066490113,0.00011476809],"about_ca_topic_score_codex":0.0009045234,"about_ca_topic_score_gemma":0.0017442377,"teacher_disagreement_score":0.0024118046,"about_ca_system_score_codex":0.00042383588,"about_ca_system_score_gemma":0.00054306834,"threshold_uncertainty_score":0.012754977},"labels":[],"label_agreement":null},{"id":"W2079215756","doi":"10.1074/mcp.h900009-mcp200","title":"The Moscow HUPO Human Proteome Project Workshop","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"","keywords":"Proteome; Human proteome project; Library science; Political science; Chemistry; Operations research; Proteomics; Computer science; Engineering; Biochemistry","score_opus":0.013083666850489454,"score_gpt":0.28225647254882685,"score_spread":0.2691728056983374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079215756","genre_codex":"commentary","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014386686,0.2183306,0.021750335,0.3465822,0.22669773,0.0007464093,0.012014602,0.001986863,0.15750456],"genre_scores_gemma":[0.054385513,0.25401428,0.039529454,0.08433532,0.044836454,0.0021831882,0.0438272,0.0017423116,0.4751463],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980281,0.00051621377,0.000118041375,0.00037485218,0.0006782364,0.00028446165],"domain_scores_gemma":[0.9978388,0.0002374426,0.00011224886,0.00010347283,0.0007376609,0.0009703752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.011032264,0.0011697041,0.0007258364,0.0015114552,0.0013281823,0.0041305125,0.0016709802,0.0027771336,0.019626727],"category_scores_gemma":[0.0028329957,0.0004170742,0.0012902692,0.00113586,0.0006534502,0.0024657946,0.0049498784,0.0036462883,0.012231621],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019932752,0.000066932625,0.0003463537,0.00042760244,0.000027677701,0.0003409562,0.00021571938,0.00017112851,0.0022447093,0.0075586243,0.9047629,0.08363805],"study_design_scores_gemma":[0.000009199378,0.000022803928,0.00065758475,0.00026552082,0.0000061647306,0.000117264666,0.0001484226,0.00005920075,0.0006604324,0.0013719242,0.99667335,0.000008081329],"about_ca_topic_score_codex":0.0016994948,"about_ca_topic_score_gemma":0.0019334466,"teacher_disagreement_score":0.019626727,"about_ca_system_score_codex":0.003169727,"about_ca_system_score_gemma":0.0060640285,"threshold_uncertainty_score":0.06565797},"labels":[],"label_agreement":null},{"id":"W2079752406","doi":"10.1074/mcp.m900222-mcp200","title":"Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":170,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; National Institute of Standards and Technology; National Institutes of Health; University of North Carolina at Chapel Hill; Broad Institute; Memorial Sloan-Kettering Cancer Center; Indiana University-Purdue University Indianapolis; Lawrence Berkeley National Laboratory; University of Victoria; University of Arizona; National Institute of General Medical Sciences; Massachusetts General Hospital; Buck Institute for Research on Aging; Purdue University; University of Washington","keywords":"Benchmarking; Chromatography; Chemistry; Computer science; Computational biology; Biology; Business","score_opus":0.010829163125063318,"score_gpt":0.24551874964432233,"score_spread":0.234689586519259,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079752406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5330694,0.005445329,0.41549677,0.0019110474,0.0014083791,0.009286331,0.008533873,0.004399433,0.02044952],"genre_scores_gemma":[0.7853847,0.001080779,0.17593779,0.0027255127,0.0002779828,0.00841099,0.019651096,0.0012531041,0.0052780346],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.8986571,0.03488333,0.008070103,0.0146493055,0.041640885,0.002099338],"domain_scores_gemma":[0.93284035,0.01858211,0.006890242,0.013073181,0.026976902,0.001637173],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.07439462,0.0019151843,0.00092478323,0.0031842056,0.0030089712,0.0043297564,0.00269711,0.0024797854,0.0014777586],"category_scores_gemma":[0.080272466,0.00068958953,0.0014485285,0.0043553133,0.0029974852,0.0012800888,0.0037937544,0.0020227432,0.0014723144],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041694716,0.004230943,0.16226645,0.002187111,0.0026730464,0.0005561539,0.0044770828,0.01959596,0.63125014,0.00925554,0.013654149,0.14568384],"study_design_scores_gemma":[0.00035611613,0.016886253,0.17162386,0.0005634261,0.0014173781,0.0010918275,0.0015907258,0.02633799,0.7027072,0.0038327079,0.07323534,0.00035728735],"about_ca_topic_score_codex":0.0062454124,"about_ca_topic_score_gemma":0.006280887,"teacher_disagreement_score":0.92560536,"about_ca_system_score_codex":0.0030783813,"about_ca_system_score_gemma":0.0059189145,"threshold_uncertainty_score":0.39344108},"labels":[],"label_agreement":null},{"id":"W2082062345","doi":"10.1074/mcp.m110.007146","title":"Differential Impact of Caveolae and Caveolin-1 Scaffolds on The Membrane Raft Proteome","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Caveolin-1 and cellular processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Health and Medical Research Council; Medical Research Council; Canadian Institutes of Health Research; Michael Smith Health Research BC; Prostate Cancer Canada","keywords":"Caveolae; Raft; Proteome; Caveolin 1; Chemistry; Cell biology; Caveolin; Membrane; Caveolin 3; Biology; Biochemistry","score_opus":0.012770622527073238,"score_gpt":0.2171220556716943,"score_spread":0.20435143314462106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082062345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980045,0.0004631636,0.0007414668,0.000036072142,0.000004956527,0.0000053604435,0.00016460869,0.000015353866,0.0005644998],"genre_scores_gemma":[0.9972011,0.0003677773,0.00083611184,0.000039715833,0.0000032447674,0.000014665712,0.00048437048,0.000028419518,0.0010247026],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99984646,0.000014799299,0.000008173557,0.000038497616,0.000043360797,0.0000486662],"domain_scores_gemma":[0.9998498,0.000042443018,0.000028990422,0.00001867907,0.0000239906,0.00003609678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013563261,0.00016070066,0.00017709534,0.00018929946,0.00018269589,0.00039734566,0.00013331267,0.00015260934,0.00058898283],"category_scores_gemma":[0.00017385867,0.00012461877,0.00014698989,0.00012796621,0.00025286715,0.00027249864,0.00032758305,0.0002985943,0.00018123032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005209028,0.0000034977845,0.00016388926,0.000011229936,0.0000024199,0.000016106113,0.000011750413,0.000019449239,0.9993112,0.0000701857,0.000008375311,0.00032979448],"study_design_scores_gemma":[0.0000065783306,0.000038697857,0.014298389,0.000003822372,0.000011491275,0.00019727617,0.000050116538,0.00093160046,0.98324364,0.000068508176,0.0011428182,0.000007086289],"about_ca_topic_score_codex":0.00067084195,"about_ca_topic_score_gemma":0.0009858068,"teacher_disagreement_score":0.00067084195,"about_ca_system_score_codex":0.00024024374,"about_ca_system_score_gemma":0.00018388448,"threshold_uncertainty_score":0.0019703507},"labels":[],"label_agreement":null},{"id":"W2083710628","doi":"10.1074/mcp.m111.015701","title":"Systems Kinomics Demonstrates Congo Basin Monkeypox Virus Infection Selectively Modulates Host Cell Signaling Responses as Compared to West African Monkeypox Virus","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; NHLBI Division of Intramural Research; National Institutes of Health","keywords":"Biology; Monkeypox; Virology; Gene; Biochemistry","score_opus":0.02263791236258192,"score_gpt":0.2351456979924326,"score_spread":0.21250778562985068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083710628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99100554,0.0009114245,0.0049895714,0.00011058458,0.000017888222,0.000029326655,0.001471396,0.00008542739,0.0013790497],"genre_scores_gemma":[0.9922146,0.0006769609,0.0038186482,0.00007587429,0.0000071448835,0.00007016837,0.0017206195,0.000010518055,0.0014054823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998745,0.000018230956,0.000008667838,0.000040473922,0.000030567524,0.000027603608],"domain_scores_gemma":[0.99994934,0.000011928574,0.000015904909,0.0000051695692,0.00000935591,0.00000836599],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012765166,0.0002511286,0.00023894642,0.00016830945,0.0001619051,0.0003965514,0.00010282926,0.00017331181,0.0012879211],"category_scores_gemma":[0.00011499751,0.000087848464,0.00015418141,0.00015357514,0.00016238625,0.00022547676,0.00019237949,0.00034284062,0.0002193452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121902296,0.0000121271205,0.0005661797,0.000032726526,0.000008688114,0.000013906147,0.000011330269,0.00012683004,0.99778074,0.00005039118,0.000043243657,0.0012319635],"study_design_scores_gemma":[0.000013691096,0.00031066194,0.03361783,0.0000072773564,0.000039309776,0.0002163362,0.00008093096,0.0059321527,0.95704645,0.00019014378,0.0025289792,0.000016192875],"about_ca_topic_score_codex":0.00068510533,"about_ca_topic_score_gemma":0.0018235208,"teacher_disagreement_score":0.0012879211,"about_ca_system_score_codex":0.00034078298,"about_ca_system_score_gemma":0.00013796212,"threshold_uncertainty_score":0.004308462},"labels":[],"label_agreement":null},{"id":"W2091090367","doi":"10.1074/mcp.m111.010892","title":"Effect of Single Amino Acid Substitution on Oxidative Modifications of the Parkinson’s Disease-Related Protein, DJ-1","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Parkinson's Disease Mechanisms and Treatments","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Research Resources; National Institute on Drug Abuse; National Institute on Aging; Parkinsonfonden; National Cancer Institute; National Institutes of Health; Purdue University; Brigham and Women's Hospital; National Parkinson Foundation; American Parkinson Disease Association; American Foundation for Pharmaceutical Education","keywords":"Neuroprotection; Sulfinic acid; Cysteine; Chemistry; Methionine; Amino acid; Biochemistry; Mutant; Oxidative phosphorylation; Wild type; Oxidative stress; Parkinson's disease; Gene; Biology; Pharmacology; Enzyme; Medicine; Internal medicine; Disease","score_opus":0.016619123282799183,"score_gpt":0.22490558173174058,"score_spread":0.2082864584489414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091090367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99903417,0.0004238513,0.00016738666,0.000025227564,0.000021517617,0.000009626192,0.0000589642,0.000008086987,0.00025109292],"genre_scores_gemma":[0.998643,0.0003259568,0.00047706463,0.000040597195,0.00000665526,0.0000065163917,0.00010683508,0.000010690883,0.00038265795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99976164,0.00006258519,0.000030631163,0.000060564387,0.000051013707,0.00003352309],"domain_scores_gemma":[0.9996406,0.000089142915,0.0001386847,0.000025230409,0.00003296153,0.00007325559],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029875804,0.00042750427,0.00027261738,0.0001286359,0.00012806313,0.0002664718,0.00023230376,0.00035294585,0.00081993244],"category_scores_gemma":[0.0004506776,0.0001287315,0.00017162637,0.00013298308,0.00022099414,0.0001470315,0.00015992718,0.00029067363,0.00011766355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007542624,0.00015489948,0.00054767006,0.000036317502,0.000031438274,0.000085949374,0.000016253765,0.00014381793,0.9971712,0.00003218651,0.000034617307,0.0009915231],"study_design_scores_gemma":[0.000031880165,0.001990163,0.0065728202,0.000007681478,0.00004381458,0.00029325904,0.000032239346,0.0011380641,0.98898566,0.000023644738,0.000872941,0.000007764209],"about_ca_topic_score_codex":0.00069788744,"about_ca_topic_score_gemma":0.0010222796,"teacher_disagreement_score":0.00081993244,"about_ca_system_score_codex":0.000222086,"about_ca_system_score_gemma":0.00019080879,"threshold_uncertainty_score":0.0027428865},"labels":[],"label_agreement":null},{"id":"W2092269740","doi":"10.1074/mcp.m114.042168","title":"KCMF1 (potassium channel modulatory factor 1) Links RAD6 to UBR4 (ubiquitin N-recognin domain-containing E3 ligase 4) and Lysosome-Mediated Degradation*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium; Princess Margaret Cancer Centre; University Health Network","funders":"Canadian Institutes of Health Research","keywords":"Ubiquitin; Ubiquitin ligase; Endosome; Lysosome; Cell biology; Ubiquitin-conjugating enzyme; Biology; Ubiquitin-Protein Ligases; Autophagy; Biochemistry; Chemistry; Intracellular; Gene","score_opus":0.022698184238410156,"score_gpt":0.25439802888058616,"score_spread":0.231699844642176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092269740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99233526,0.002935738,0.0036319247,0.000096936055,0.000018831415,0.000016002497,0.00017696866,0.000077957564,0.0007103863],"genre_scores_gemma":[0.9936925,0.0006933939,0.0029816413,0.00005880261,0.000010755073,0.000011613114,0.00043085433,0.0000107307305,0.002109555],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998584,0.000018783267,0.000010585386,0.000042542342,0.000024528295,0.000045066106],"domain_scores_gemma":[0.9998913,0.000014104752,0.00005284752,0.000009263073,0.000011204418,0.000021324671],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001626576,0.0005997882,0.00024182854,0.0002354746,0.00026334802,0.00030224407,0.00023150425,0.00051790813,0.001330097],"category_scores_gemma":[0.000174548,0.00021138471,0.00024675153,0.000115921765,0.00018787784,0.00026864084,0.0003242664,0.0002752836,0.00069933117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015174336,0.000019412351,0.002495796,0.000052340376,0.000015486858,0.00027600295,0.000012197777,0.000107191336,0.9944488,0.000093497074,0.000057483943,0.0022700494],"study_design_scores_gemma":[0.000015446249,0.00016256352,0.035169914,0.0000073415067,0.000024105919,0.0017677296,0.000023568311,0.0013293739,0.95834136,0.00010839334,0.0030417428,0.000008448322],"about_ca_topic_score_codex":0.0005827767,"about_ca_topic_score_gemma":0.0005694108,"teacher_disagreement_score":0.001330097,"about_ca_system_score_codex":0.00049632613,"about_ca_system_score_gemma":0.00011269524,"threshold_uncertainty_score":0.0044496655},"labels":[],"label_agreement":null},{"id":"W2093129640","doi":"10.1074/mcp.m112.023770","title":"Platform Dependencies in Bottom-up Hydrogen/Deuterium Exchange Mass Spectrometry","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Mass spectrometry; Deuterium; Hydrogen–deuterium exchange; Chemistry; Hydrogen; Physics; Chromatography; Nuclear physics; Organic chemistry","score_opus":0.013797507087153542,"score_gpt":0.23373601455502743,"score_spread":0.21993850746787388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093129640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57527536,0.005387138,0.3947107,0.0013536278,0.0009606849,0.00087147416,0.0016530065,0.007959275,0.01182873],"genre_scores_gemma":[0.8259764,0.0023532645,0.16422808,0.0007881922,0.00010048866,0.0004236827,0.0016341616,0.0011152391,0.003380486],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963504,0.00045162617,0.00020286774,0.0009128226,0.0016038145,0.0004784885],"domain_scores_gemma":[0.9940667,0.003185545,0.0004205004,0.0010186931,0.0010506472,0.0002579627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009320146,0.0013656261,0.00092922687,0.0008346452,0.0010291409,0.0023323726,0.0017222516,0.0011746314,0.002385139],"category_scores_gemma":[0.011109915,0.0010713392,0.0008024895,0.0006334658,0.00089041126,0.0034412306,0.0036327597,0.0026776358,0.0016390262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013922594,0.00022814494,0.010976538,0.0013339667,0.000276166,0.0012434886,0.00046866134,0.032470815,0.8780319,0.005677927,0.0028297934,0.06507044],"study_design_scores_gemma":[0.00010058366,0.0012316824,0.014729912,0.00016386472,0.00020150072,0.0008059376,0.00036636743,0.12231669,0.83182037,0.007405739,0.020576712,0.00028071468],"about_ca_topic_score_codex":0.0017859252,"about_ca_topic_score_gemma":0.0022108732,"teacher_disagreement_score":0.009320146,"about_ca_system_score_codex":0.0011587914,"about_ca_system_score_gemma":0.0011984063,"threshold_uncertainty_score":0.04929018},"labels":[],"label_agreement":null},{"id":"W2094988852","doi":"10.1074/mcp.m114.040113","title":"Targeting Synaptic Pathology with a Novel Affinity Mass Spectrometry Approach","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Neuroscience and Neuropharmacology Research","field":"Neuroscience","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Demensfonden; Swedish Brain Power","keywords":"Synaptic membrane; Neuroscience; Proteomics; Chemistry; Membrane protein; Function (biology); Biology; Cell biology; Biochemistry; Membrane","score_opus":0.023124101268334734,"score_gpt":0.25524965266860017,"score_spread":0.23212555140026545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094988852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5183272,0.0045936285,0.46761927,0.0016352506,0.00031816476,0.00035789577,0.00088605017,0.0018698198,0.0043927636],"genre_scores_gemma":[0.6758352,0.0031735895,0.3114793,0.001198935,0.00013393651,0.00033595614,0.00088679354,0.0001634555,0.006792789],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999537,0.000039398135,0.000029011328,0.00011636747,0.00020873222,0.00006960929],"domain_scores_gemma":[0.999731,0.00005040182,0.00005863521,0.000044579036,0.000072912946,0.000042411233],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003917123,0.00081889285,0.00053939247,0.00073249394,0.0005196307,0.0007975971,0.0010688367,0.0010243639,0.0009677689],"category_scores_gemma":[0.0002876055,0.00053811766,0.0004618862,0.00029738888,0.00037533607,0.00061919657,0.00074137194,0.001259897,0.0009809218],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013884363,0.000014603681,0.00007872039,0.000018550383,0.00000963748,0.000025678899,0.000006153333,0.000024721405,0.9982482,0.000093818315,0.00006472497,0.0014012343],"study_design_scores_gemma":[0.000014253557,0.00010834877,0.0019853264,0.0000045284987,0.000030804662,0.00093053695,0.000015759986,0.00296243,0.9904241,0.00023198189,0.0032666961,0.000025152029],"about_ca_topic_score_codex":0.001151462,"about_ca_topic_score_gemma":0.0027567414,"teacher_disagreement_score":0.001151462,"about_ca_system_score_codex":0.00053287216,"about_ca_system_score_gemma":0.00040582573,"threshold_uncertainty_score":0.0038662553},"labels":[],"label_agreement":null},{"id":"W2095602964","doi":"10.1074/mcp.m111.016626","title":"Use of Kinase Inhibitors to Correct ΔF508-CFTR Function","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Ontario Institute for Cancer Research; University of Toronto","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Cystic Fibrosis Canada; Ontario Institute for Cancer Research; Cystic Fibrosis Foundation","keywords":"ΔF508; Cystic fibrosis; Cystic fibrosis transmembrane conductance regulator; Kinase; Biology; Molecular biology; Cell biology; Cancer research; MEK inhibitor; MAPK/ERK pathway; Chemistry; Genetics","score_opus":0.02315977018290306,"score_gpt":0.26998616781676477,"score_spread":0.24682639763386172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095602964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9462933,0.03186631,0.009773737,0.0004408531,0.00038830625,0.00063483784,0.0022712313,0.00063119037,0.007700319],"genre_scores_gemma":[0.9625975,0.018891422,0.010597819,0.00025543105,0.000050358412,0.0002665424,0.001940135,0.00008089433,0.00531988],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996971,0.000034419092,0.000036039335,0.00007684,0.00008473344,0.000070925096],"domain_scores_gemma":[0.9999075,0.000030086178,0.000020043128,0.000010812147,0.000014632909,0.000016937634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024400446,0.00075927,0.0007793675,0.00075295195,0.000288147,0.0005417376,0.00036319374,0.00041292858,0.0016530252],"category_scores_gemma":[0.00017353438,0.0002485633,0.000727514,0.00048250557,0.00015324308,0.0003058696,0.00028506014,0.00087031396,0.00066504185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027428387,0.00021014978,0.00025727763,0.00020603737,0.00004526748,0.00012324472,0.000019703082,0.00030302172,0.98290586,0.00017188588,0.0002669726,0.015216342],"study_design_scores_gemma":[0.00009686501,0.0021355909,0.001943281,0.000018817687,0.000093485956,0.00048427805,0.000018746274,0.00070566434,0.9854896,0.00005119219,0.008946598,0.000015746176],"about_ca_topic_score_codex":0.00056884234,"about_ca_topic_score_gemma":0.0015469401,"teacher_disagreement_score":0.0016530252,"about_ca_system_score_codex":0.00036204883,"about_ca_system_score_gemma":0.00032277912,"threshold_uncertainty_score":0.0055298805},"labels":[],"label_agreement":null},{"id":"W2096738735","doi":"10.1074/mcp.m114.043414","title":"In Vivo Assessment of Protease Dynamics in Cutaneous Wound Healing by Degradomics Analysis of Porcine Wound Exudates","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Universität Zürich; Functional Genomics Center Zurich; Eidgenössische Technische Hochschule Zürich; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Proteases; Wound healing; Proteolysis; Inflammation; Extracellular matrix; Cell biology; Protease; Biology; Granulation tissue; Chemistry; Immunology; Biochemistry; Enzyme","score_opus":0.005048564238955522,"score_gpt":0.22718541774577222,"score_spread":0.2221368535068167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096738735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98620135,0.0011650956,0.011465665,0.000033212706,0.000017948412,0.00004197983,0.00035564188,0.000036639285,0.00068234256],"genre_scores_gemma":[0.9809667,0.001741396,0.014593571,0.000116108335,0.000014437388,0.00011637406,0.00068186695,0.00003629801,0.0017332716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988186,0.000016443864,0.000006032122,0.00003939257,0.00002657936,0.000029660978],"domain_scores_gemma":[0.9998498,0.000028395609,0.000049943756,0.000013615815,0.000023519919,0.000034710232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002910494,0.00036947653,0.00019989755,0.00034352916,0.00013484893,0.00034088598,0.0001317527,0.0003295326,0.00043407566],"category_scores_gemma":[0.00017046675,0.0001595225,0.00025839685,0.00026885656,0.000246868,0.0002737997,0.00015368119,0.00042021152,0.00018479215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009619919,0.000009878633,0.00030409722,0.000017618562,0.0000031530617,0.000021547043,0.000014833206,0.000031430238,0.9988531,0.000012186786,0.0000055509527,0.0006305041],"study_design_scores_gemma":[0.000008449454,0.0005944687,0.028926326,0.000010271531,0.0000331995,0.0002892887,0.00008321841,0.002165851,0.9670554,0.000069216134,0.0007502032,0.00001422041],"about_ca_topic_score_codex":0.00040678165,"about_ca_topic_score_gemma":0.00049187726,"teacher_disagreement_score":0.00043407566,"about_ca_system_score_codex":0.00015665877,"about_ca_system_score_gemma":0.00012665948,"threshold_uncertainty_score":0.0015392303},"labels":[],"label_agreement":null},{"id":"W2096789359","doi":"10.1074/mcp.m800516-mcp200","title":"Differential N-glycosylation of Kallikrein 6 Derived from Ovarian Cancer Cells or the Central Nervous System","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Coagulation, Bradykinin, Polyphosphates, and Angioedema","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Mount Sinai Hospital","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ovarian cancer; Glycosylation; Kallikrein; Chemistry; Sialic acid; N-linked glycosylation; Cancer research; Cancer; Glycan; Biology; Biochemistry; Internal medicine; Enzyme; Medicine; Glycoprotein","score_opus":0.016534029343457622,"score_gpt":0.22239278254428615,"score_spread":0.20585875320082853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096789359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995676,0.0024161176,0.00084806676,0.00006193137,0.000017309974,0.000009728034,0.00019618933,0.000014317501,0.0007603642],"genre_scores_gemma":[0.99355596,0.0026327888,0.0020069412,0.000110132874,0.00001543549,0.0000134542415,0.00069266383,0.000007487592,0.00096522283],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993026,0.000010026013,0.0000071407103,0.000016005091,0.000022570839,0.000014051798],"domain_scores_gemma":[0.9999387,0.000007120126,0.000024446215,0.000004967389,0.00001122023,0.0000135466935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007171945,0.00018035772,0.00013198685,0.00018632824,0.000100499965,0.00023276248,0.000089305555,0.00015193303,0.0004388964],"category_scores_gemma":[0.00019927011,0.000053214146,0.00014863312,0.00021243842,0.00011176792,0.00016577728,0.00017898939,0.0002347353,0.000108314365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002147814,0.00001768177,0.010521936,0.00008918106,0.000022097704,0.00025383043,0.00004660268,0.0000390838,0.98046815,0.000085037456,0.00009739351,0.008144156],"study_design_scores_gemma":[0.000019124764,0.00046620154,0.40154025,0.000027940578,0.00007118564,0.004349662,0.00019379462,0.0015967806,0.5824351,0.00041456125,0.008865054,0.000020411375],"about_ca_topic_score_codex":0.00047588695,"about_ca_topic_score_gemma":0.0005724647,"teacher_disagreement_score":0.00047588695,"about_ca_system_score_codex":0.00013016307,"about_ca_system_score_gemma":0.000120617784,"threshold_uncertainty_score":0.0014682412},"labels":[],"label_agreement":null},{"id":"W2096845911","doi":"10.1074/mcp.m113.031757","title":"Global Proteome Analysis Identifies Active Immunoproteasome Subunits in Human Platelets","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Platelet Disorders and Treatments","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Princess Margaret Cancer Centre; Vancouver Hospital and Health Sciences Centre; University Health Network; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Centre for Blood Research, University of British Columbia","keywords":"Proteasome; Platelet; Proteome; Protein subunit; Cell biology; Platelet activation; Major histocompatibility complex; Function (biology); Biology; Chemistry; Immune system; Biochemistry; Immunology; Gene","score_opus":0.006976441720665827,"score_gpt":0.24703935649911193,"score_spread":0.2400629147784461,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096845911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928824,0.0013960949,0.0016010489,0.00005846034,0.0000057505795,0.000016448614,0.0036169838,0.000029170227,0.00039355707],"genre_scores_gemma":[0.9827435,0.0010705919,0.0035323703,0.00007173048,0.000013243863,0.000038710936,0.012190485,0.000011655088,0.00032766545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997987,0.000022893702,0.000026111615,0.000072057024,0.000053003376,0.00002717349],"domain_scores_gemma":[0.99985576,0.000036961155,0.000045347948,0.000018936278,0.000023993009,0.000019105923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002117749,0.00022210676,0.0003316139,0.0010293752,0.000198543,0.0004983836,0.000108778084,0.00021842525,0.0006560461],"category_scores_gemma":[0.00039887475,0.00011429359,0.00042500207,0.0010836156,0.00013971345,0.00018414925,0.00030751753,0.00027818952,0.0002405885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013331922,0.00008349036,0.08328865,0.000258965,0.00031117856,0.0007537872,0.000229794,0.00084099773,0.8884496,0.00020211675,0.00081178755,0.023436481],"study_design_scores_gemma":[0.000054991862,0.0005877782,0.81043154,0.00003626683,0.00041551958,0.004952296,0.00037118903,0.005101928,0.17045684,0.00052906066,0.007026942,0.00003575472],"about_ca_topic_score_codex":0.0005338658,"about_ca_topic_score_gemma":0.0005357085,"teacher_disagreement_score":0.0010293752,"about_ca_system_score_codex":0.00014214165,"about_ca_system_score_gemma":0.00017007224,"threshold_uncertainty_score":0.002194643},"labels":[],"label_agreement":null},{"id":"W2097033861","doi":"10.1074/mcp.m000050-mcp201","title":"Multiplex N-terminome Analysis of MMP-2 and MMP-9 Substrate Degradomes by iTRAQ-TAILS Quantitative Proteomics","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":282,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Proteome; Proteolysis; Isobaric labeling; Trypsin; Proteomics; Quantitative proteomics; Chemistry; Biochemistry; Peptide; Label-free quantification; Bottom-up proteomics; Multiplex; Cleavage (geology); Peptide sequence; Protease; Tandem mass spectrometry; Biology; Mass spectrometry; Enzyme; Protein mass spectrometry; Bioinformatics; Chromatography; Gene","score_opus":0.0090238800525272,"score_gpt":0.2583913410418819,"score_spread":0.2493674609893547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097033861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.81923217,0.0020435518,0.17385772,0.000094674266,0.00007008947,0.0002669869,0.0020624353,0.00045791813,0.0019144298],"genre_scores_gemma":[0.7158301,0.0021408892,0.27153403,0.00024727205,0.000052347514,0.0009650213,0.0041340413,0.00023352024,0.0048628366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944884,0.00006643302,0.000040557363,0.0001851973,0.00019701578,0.000061960964],"domain_scores_gemma":[0.99968994,0.000079558384,0.00007271358,0.000036321006,0.0000873019,0.000034113924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006211376,0.0008647248,0.00039335596,0.00056128233,0.00031384197,0.00048723206,0.00035454435,0.00052834867,0.00093417725],"category_scores_gemma":[0.00045435037,0.00020432973,0.00035547232,0.00042026502,0.00028739418,0.0004791273,0.0003560309,0.00067265244,0.0005078035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004355228,0.000009601745,0.0001331135,0.000023204237,0.000004253177,0.000015787058,0.00001098993,0.000029671226,0.9987423,0.000031989675,0.000011962848,0.000943515],"study_design_scores_gemma":[0.000008428859,0.00011658284,0.004656863,0.0000051865,0.000019196668,0.00023767253,0.000019915777,0.002503654,0.9910238,0.00010953062,0.0012889631,0.000010323285],"about_ca_topic_score_codex":0.00034876616,"about_ca_topic_score_gemma":0.0006687383,"teacher_disagreement_score":0.00093417725,"about_ca_system_score_codex":0.0002748519,"about_ca_system_score_gemma":0.00021964697,"threshold_uncertainty_score":0.0032849312},"labels":[],"label_agreement":null},{"id":"W2097275194","doi":"10.1074/mcp.m114.046516","title":"Serial Analysis of 38 Proteins during the Progression of Human Breast Tumor in Mice Using an Antibody Colocalization Microarray*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Occupational Cancer Research Centre; McGill University and Génome Québec Innovation Centre","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Concordia University","keywords":"Antibody; Colocalization; Receiver operating characteristic; Biomarker; Breast cancer; Mammary tumor; Chemistry; Protein microarray; Molecular biology; Microarray; Biology; Cancer; Pathology; Immunology; Medicine; Internal medicine; Biochemistry; Gene expression; Gene","score_opus":0.013737079283936967,"score_gpt":0.29907417161037536,"score_spread":0.2853370923264384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097275194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96335584,0.0015378869,0.03222824,0.00015625029,0.000031020296,0.00011273815,0.0011003929,0.0005088163,0.0009687448],"genre_scores_gemma":[0.9280309,0.0015765069,0.063707516,0.00025140558,0.000033048134,0.00046853142,0.0021888257,0.0001158832,0.003627344],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974006,0.000033359716,0.000014496737,0.00009699537,0.00006764514,0.000047304962],"domain_scores_gemma":[0.99976915,0.00006433557,0.000057673442,0.000023625113,0.00005270191,0.000032569063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040925623,0.00041508817,0.00038101393,0.00071146386,0.00023937605,0.00027454575,0.00015959692,0.00036117094,0.0004892845],"category_scores_gemma":[0.0002503459,0.0001960794,0.00024043897,0.0003814946,0.00017094449,0.00023421242,0.00019085138,0.00046194196,0.00030096222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013832518,0.000026067533,0.0010223758,0.000015920865,0.0000071408895,0.000011220384,0.000012853897,0.000070812835,0.99682283,0.000014482612,0.000038205828,0.0018197768],"study_design_scores_gemma":[0.000009984755,0.0005149419,0.034321547,0.0000037631273,0.00004488872,0.00018728248,0.000034411696,0.003530925,0.9600787,0.00005470644,0.0012083894,0.000010454498],"about_ca_topic_score_codex":0.00050871697,"about_ca_topic_score_gemma":0.0009801894,"teacher_disagreement_score":0.00071146386,"about_ca_system_score_codex":0.00030847423,"about_ca_system_score_gemma":0.00016233763,"threshold_uncertainty_score":0.0022380948},"labels":[],"label_agreement":null},{"id":"W2097414503","doi":"10.1074/mcp.m114.038315","title":"Diversity Within the O-linked Protein Glycosylation Systems of Acinetobacter Species","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Alberta Glycomics Centre; University of British Columbia","funders":"","keywords":"Glycosylation; Computational biology; Diversity (politics); Acinetobacter; N-linked glycosylation; Biology; Genetics; Chemistry; Glycan; Glycoprotein; Bacteria","score_opus":0.011787727586885895,"score_gpt":0.191051862539319,"score_spread":0.1792641349524331,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097414503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988261,0.00035087057,0.00025428482,0.000017407021,0.0000015335197,0.000004933028,0.00018907031,0.000005985638,0.00034974838],"genre_scores_gemma":[0.99737453,0.0004811704,0.0012295058,0.000032228985,0.0000030442066,0.000008471434,0.0006559853,0.000005184403,0.00020981452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998185,0.000022737666,0.000024750425,0.000058488433,0.000038899874,0.000036699832],"domain_scores_gemma":[0.99981207,0.00002413958,0.000069871574,0.000019323252,0.000041051455,0.000033658755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014164536,0.00023851736,0.00017381905,0.00072228897,0.00019228304,0.00045719475,0.000106311,0.00020640201,0.00038106352],"category_scores_gemma":[0.00031381444,0.00012194715,0.00020908813,0.00061537395,0.000177219,0.0002497554,0.00035172937,0.00018498924,0.00012869357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021696353,0.000032748285,0.051193707,0.00006466548,0.000043713688,0.00016557254,0.0003015103,0.00020269198,0.94078326,0.00009364711,0.000042963962,0.0068584727],"study_design_scores_gemma":[0.000011973863,0.0004028671,0.9005683,0.000043191358,0.00008400272,0.0024698018,0.00086967903,0.0016328619,0.09028567,0.00039370853,0.0032102144,0.000027881171],"about_ca_topic_score_codex":0.0009946517,"about_ca_topic_score_gemma":0.0010414138,"teacher_disagreement_score":0.0009946517,"about_ca_system_score_codex":0.00015876771,"about_ca_system_score_gemma":0.00012443306,"threshold_uncertainty_score":0.001977682},"labels":[],"label_agreement":null},{"id":"W2097792955","doi":"10.1074/mcp.o111.008425","title":"Improved Recovery and Identification of Membrane Proteins from Rat Hepatic Cells using a Centrifugal Proteomic Reactor","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Membrane protein; Proteome; Chemistry; Proteomics; Biochemistry; Integral membrane protein; Transmembrane protein; Peripheral membrane protein; Differential centrifugation; Secretory protein; Membrane; Chromatography; Secretion; Receptor","score_opus":0.01231826460613446,"score_gpt":0.2179567037831732,"score_spread":0.20563843917703872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097792955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67223096,0.0052238707,0.31342918,0.0008034826,0.000118136224,0.00045599032,0.0023181194,0.0017111254,0.0037091926],"genre_scores_gemma":[0.56868786,0.0063985945,0.40383703,0.00040317405,0.000099943914,0.000681675,0.008002433,0.0005183986,0.011370802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995004,0.00010862496,0.00004391353,0.00012750452,0.00016554013,0.0000540227],"domain_scores_gemma":[0.99967504,0.00008709097,0.00004780463,0.000058178204,0.00010299355,0.000028943507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010965451,0.0012544685,0.00073679147,0.0008199524,0.00037557783,0.00059305294,0.0008000447,0.00047113554,0.000850637],"category_scores_gemma":[0.0006381816,0.00029060603,0.0004097028,0.00064985984,0.00037350424,0.00047800853,0.00059630605,0.0008228907,0.0010606621],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003591018,0.000013091632,0.000103333616,0.000029558943,0.0000064513642,0.000018895147,0.000011145937,0.000055858294,0.9969289,0.000071966635,0.000055845136,0.0026691435],"study_design_scores_gemma":[0.000018962945,0.00009145781,0.00359039,0.000007858494,0.00003718186,0.00017645405,0.000018287865,0.0021445977,0.98888177,0.0000659431,0.004952175,0.000014982038],"about_ca_topic_score_codex":0.0027433073,"about_ca_topic_score_gemma":0.002495911,"teacher_disagreement_score":0.0027433073,"about_ca_system_score_codex":0.0004730999,"about_ca_system_score_gemma":0.00084568246,"threshold_uncertainty_score":0.0057991743},"labels":[],"label_agreement":null},{"id":"W2099415899","doi":"10.1074/mcp.m110.000687","title":"Highly Reproducible Label Free Quantitative Proteomic Analysis of RNA Polymerase Complexes","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences","keywords":"Quantitative proteomics; Transcription factor II F; Proteomics; Computational biology; Peptide; Biology; RNA; Molecular biology; Chemistry; RNA polymerase; Biochemistry; Gene","score_opus":0.014229166163386969,"score_gpt":0.27643521374222113,"score_spread":0.26220604757883414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099415899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5208236,0.00050206593,0.47491348,0.00015341482,0.000057563102,0.00019094712,0.0012194823,0.0013164281,0.000822948],"genre_scores_gemma":[0.7327794,0.0005022411,0.26400045,0.000097320146,0.000025699726,0.00034392427,0.0013126893,0.00025302073,0.00068533386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99723536,0.00067459454,0.00023369468,0.00061378407,0.0011456382,0.00009694577],"domain_scores_gemma":[0.9963697,0.0019513197,0.00037726588,0.000663151,0.00054934015,0.000089283494],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0039265575,0.0005651822,0.00075874163,0.0004295834,0.0003373369,0.0011793813,0.0009630371,0.00080485176,0.00038008322],"category_scores_gemma":[0.005613719,0.00045097497,0.0006438743,0.00053091045,0.00067847234,0.0008291403,0.0005337895,0.0013477312,0.0003904326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007769992,0.000052082447,0.0009989996,0.000094358424,0.00004422659,0.000041399668,0.000043780838,0.008011934,0.9848756,0.0006704166,0.00009904798,0.0049904706],"study_design_scores_gemma":[0.000017883533,0.00010937454,0.0029101337,0.000008374501,0.000027103639,0.000072698895,0.000020990941,0.124131836,0.8708956,0.0009782991,0.0007811769,0.000046558802],"about_ca_topic_score_codex":0.0005958075,"about_ca_topic_score_gemma":0.0007217079,"teacher_disagreement_score":0.0039265575,"about_ca_system_score_codex":0.0007535729,"about_ca_system_score_gemma":0.0005130551,"threshold_uncertainty_score":0.0207659},"labels":[],"label_agreement":null},{"id":"W2099937543","doi":"10.1074/mcp.m700559-mcp200","title":"An Unbiased Evaluation of CK2 Inhibitors by Chemoproteomics","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Kinase; Benzimidazole; Carcinogenesis; Serine; Apoptosis; Drug discovery; Cell biology; Phosphorylation; Mutant; Biochemistry; Biology; Chemistry; Cancer research; Gene","score_opus":0.014784130144588495,"score_gpt":0.24748011715574625,"score_spread":0.23269598701115776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099937543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95681953,0.007904511,0.026319103,0.00038080686,0.00011242649,0.0006643315,0.0025139942,0.00032750115,0.0049577774],"genre_scores_gemma":[0.9495903,0.011091606,0.029402073,0.0003270517,0.00004105051,0.0006186126,0.0032616446,0.000105156265,0.0055624773],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99963653,0.000053839492,0.000026812506,0.00006239864,0.00016361414,0.00005678227],"domain_scores_gemma":[0.99986064,0.000018534087,0.000032531465,0.000018537145,0.000054708467,0.000014967793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040621456,0.00080293394,0.00062134484,0.0006331067,0.00031860132,0.00031163354,0.00029085606,0.00038684998,0.0008726407],"category_scores_gemma":[0.00022204533,0.0003202375,0.00035088338,0.0005234064,0.00020143087,0.0002653345,0.00027886164,0.0006148052,0.00035721966],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006994598,0.00004384214,0.000089566514,0.00002798836,0.000007108085,0.000015401258,0.0000072972807,0.00015822423,0.9976272,0.000038379138,0.000060964234,0.0018540992],"study_design_scores_gemma":[0.00001338178,0.00042762767,0.001029401,0.0000035008675,0.000025377329,0.000059956565,0.000009472521,0.00064521714,0.9959032,0.000018844303,0.0018582192,0.0000056804374],"about_ca_topic_score_codex":0.00094772835,"about_ca_topic_score_gemma":0.0023064117,"teacher_disagreement_score":0.00094772835,"about_ca_system_score_codex":0.0003457664,"about_ca_system_score_gemma":0.00036257366,"threshold_uncertainty_score":0.0029192567},"labels":[],"label_agreement":null},{"id":"W2101175892","doi":"10.1074/mcp.m115.052480","title":"Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Aptose Biosciences (Canada); Université de Sherbrooke","funders":"Institut National Du Cancer; Direction Générale de l’offre de Soins; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche","keywords":"Proprotein convertase; Proprotein Convertases; Cancer immunotherapy; Immunotherapy; Cancer; Cancer research; PCSK9; Medicine; Computational biology; Chemistry; Biology; Internal medicine; Cholesterol","score_opus":0.013673578295713642,"score_gpt":0.2894643191872319,"score_spread":0.2757907408915183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101175892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942221,0.0019313892,0.0024283845,0.00015419134,0.000049415277,0.000030091365,0.000561228,0.00003788974,0.00058540254],"genre_scores_gemma":[0.99233764,0.0017349233,0.00244891,0.00012772817,0.000015003273,0.00005058223,0.0008300895,0.000028119173,0.0024269228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991834,0.000007617775,0.000006768717,0.000017307239,0.000027945884,0.00002204972],"domain_scores_gemma":[0.9999403,0.000008423975,0.000020338239,0.000004979377,0.000011272619,0.000014664962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013301695,0.00029211494,0.00024753643,0.00010775025,0.00010010705,0.00019720533,0.00015150712,0.00030889828,0.0005883421],"category_scores_gemma":[0.00006463682,0.00009107539,0.00029993587,0.00011062763,0.0001781882,0.00013880002,0.000093857976,0.0004902324,0.00026436814],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008090392,0.000007946809,0.000052135467,0.000016678236,0.0000025588927,0.000028318165,0.0000026841735,0.000016113521,0.99953926,0.000013988486,0.000010703294,0.00022872674],"study_design_scores_gemma":[0.000011209183,0.00013831985,0.0027650432,0.0000031292982,0.00001589281,0.00019788707,0.000013863609,0.00036123832,0.99555427,0.000022400576,0.0009142922,0.0000024566148],"about_ca_topic_score_codex":0.0003414571,"about_ca_topic_score_gemma":0.0003476907,"teacher_disagreement_score":0.0005883421,"about_ca_system_score_codex":0.00017343364,"about_ca_system_score_gemma":0.00014711959,"threshold_uncertainty_score":0.0019681454},"labels":[],"label_agreement":null},{"id":"W2101605262","doi":"10.1074/mcp.m600303-mcp200","title":"Analysis and Quantification of Diagnostic Serum Markers and Protein Signatures for Gaucher Disease","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Lysosomal Storage Disorders Research","field":"Medicine","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institute for Theoretical Astrophysics","keywords":"Biomarker; Proteomics; Quantitative proteomics; Enzyme replacement therapy; Proteome; Chemistry; Computational biology; Blood proteins; Disease; Biochemistry; Biology; Gene; Medicine; Pathology","score_opus":0.010002929772653157,"score_gpt":0.26874592438713424,"score_spread":0.2587429946144811,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101605262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.962678,0.003234893,0.032611605,0.00013694668,0.000026677128,0.00006180074,0.0004959381,0.00014380894,0.0006104554],"genre_scores_gemma":[0.94263726,0.0011193308,0.05481367,0.00007590014,0.000021278896,0.00009276706,0.0007183255,0.000023770403,0.00049765926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996401,0.000072033305,0.000038889746,0.000084609026,0.00013794149,0.000026410788],"domain_scores_gemma":[0.99974555,0.000086424676,0.00005393813,0.000027801694,0.000060329887,0.000025940757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005563155,0.00027079653,0.0004104643,0.00073835993,0.0002143377,0.00044408266,0.00018164571,0.00033194537,0.00027035282],"category_scores_gemma":[0.00078942615,0.00012204616,0.00016133368,0.00034450702,0.00026975368,0.00019482819,0.00016698203,0.0002849504,0.00013938293],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020493685,0.000017147731,0.0016513768,0.00004698692,0.000008229572,0.0000383635,0.000018052657,0.00007902391,0.99241924,0.00007200103,0.000036611877,0.005407991],"study_design_scores_gemma":[0.000017821476,0.00027822927,0.01638985,0.0000089774785,0.00004765183,0.0009952348,0.000037038655,0.0033862777,0.97743714,0.0002616111,0.0011276569,0.000012537625],"about_ca_topic_score_codex":0.0002301321,"about_ca_topic_score_gemma":0.00035752082,"teacher_disagreement_score":0.00073835993,"about_ca_system_score_codex":0.00030752955,"about_ca_system_score_gemma":0.00027155588,"threshold_uncertainty_score":0.0029421449},"labels":[],"label_agreement":null},{"id":"W2101852417","doi":"10.1074/mcp.m113.033464","title":"Novel Protein Interactions with Endoglin and Activin Receptor-like Kinase 1: Potential Role in Vascular Networks","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Vascular Anomalies and Treatments","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Mount Sinai Hospital; Hospital for Sick Children; Heart and Stroke Foundation; University of Toronto","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Beth Israel Deaconess Medical Center; Heart and Stroke Foundation of Canada; Brigham and Women's Hospital; National Natural Science Foundation of China","keywords":"Endoglin; ACVRL1; ACVR2B; Receptor; Transforming growth factor beta; Cell biology; Protein phosphatase 2; Signal transduction; Biology; Chemistry; Phosphorylation; Transforming growth factor; Cancer research; Molecular biology; TGF beta signaling pathway; Genetics; Phosphatase","score_opus":0.004335865478104313,"score_gpt":0.189594997522601,"score_spread":0.1852591320444967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101852417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98803174,0.0063541476,0.003996989,0.00010907711,0.00000982062,0.0000113011365,0.0001990558,0.00005935954,0.0012286024],"genre_scores_gemma":[0.9929952,0.001500565,0.002963176,0.00005690008,0.000013004879,0.000019858422,0.000499836,0.000008677041,0.00194272],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999064,0.00001542308,0.00000426543,0.000029739544,0.00002438261,0.000019677233],"domain_scores_gemma":[0.999925,0.000009145436,0.00003507125,0.0000045707015,0.0000058390688,0.000020340234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010870591,0.00039139893,0.00024362346,0.00026838123,0.00015956648,0.0003085654,0.00021898515,0.00024357981,0.000628506],"category_scores_gemma":[0.00008873138,0.000118762946,0.00023773522,0.00022705374,0.00012728797,0.00021693215,0.00021732735,0.00017668228,0.00019560885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013142708,0.000020641224,0.0020444747,0.000058615493,0.000017550607,0.00034747334,0.00001626694,0.00016410051,0.9945155,0.0002468624,0.000069362235,0.0023677258],"study_design_scores_gemma":[0.00005582659,0.0003813178,0.16882758,0.000021636833,0.00013410416,0.0050862115,0.000082353996,0.0091724135,0.8059157,0.0008836167,0.009417347,0.000021906795],"about_ca_topic_score_codex":0.00023018871,"about_ca_topic_score_gemma":0.0003859028,"teacher_disagreement_score":0.000628506,"about_ca_system_score_codex":0.00028010466,"about_ca_system_score_gemma":0.0000947326,"threshold_uncertainty_score":0.0021025538},"labels":[],"label_agreement":null},{"id":"W2103113681","doi":"10.1074/mcp.r800012-mcp200","title":"Metadegradomics","year":2008,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Proteases; Stable isotope labeling by amino acids in cell culture; Protease; Proteome; Proteomics; Proteolysis; Computational biology; Quantitative proteomics; Biology; Biochemistry; Chemistry; Enzyme","score_opus":0.03945468160199055,"score_gpt":0.31474305216365006,"score_spread":0.2752883705616595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103113681","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05025783,0.09403863,0.59029037,0.0062426208,0.005786544,0.0011817452,0.049731042,0.020439602,0.18203162],"genre_scores_gemma":[0.32671148,0.091124825,0.39243415,0.0073067844,0.0015983521,0.001693105,0.07985027,0.0072039044,0.09207708],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99838495,0.00022027049,0.000098813376,0.00055208895,0.00054389104,0.00019999035],"domain_scores_gemma":[0.9994382,0.00009181597,0.00006450611,0.00019653366,0.00015796306,0.000050919447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018616635,0.0018211909,0.0015160887,0.0027447452,0.000836946,0.004153744,0.0018705763,0.001708269,0.02058661],"category_scores_gemma":[0.0014850519,0.0008347422,0.0020564348,0.0027087089,0.0007887216,0.003688084,0.0027475907,0.002992489,0.011386068],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090288866,0.0002315336,0.004842016,0.006219608,0.0011402908,0.0018032047,0.00052831584,0.005815045,0.4204246,0.10922688,0.07053988,0.37832576],"study_design_scores_gemma":[0.000055513105,0.00019737493,0.0018263541,0.00038132755,0.00027099668,0.0014069041,0.00017974105,0.006538975,0.15845698,0.02933866,0.8012405,0.00010662659],"about_ca_topic_score_codex":0.0008874316,"about_ca_topic_score_gemma":0.0010775862,"teacher_disagreement_score":0.02058661,"about_ca_system_score_codex":0.0013669176,"about_ca_system_score_gemma":0.0014688644,"threshold_uncertainty_score":0.068869054},"labels":[],"label_agreement":null},{"id":"W2103397649","doi":"10.1074/mcp.m800268-mcp200","title":"High-content Functional Screen to Identify Proteins that Correct F508del-CFTR Function","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Cystic fibrosis transmembrane conductance regulator; Cell biology; Chemistry; Mutation; Cystic fibrosis; Molecular biology; Biology; Biochemistry; Genetics; Gene","score_opus":0.05056950446455685,"score_gpt":0.27594497767655896,"score_spread":0.2253754732120021,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103397649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9629804,0.00150024,0.025390636,0.00042625572,0.00008450443,0.00044665037,0.0060269865,0.00083998835,0.0023042683],"genre_scores_gemma":[0.92802703,0.0020392432,0.048787244,0.00042625345,0.000036228932,0.0005228063,0.012227994,0.0003621423,0.007571107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995148,0.00007952116,0.00005775772,0.00008029724,0.00020766236,0.000059853435],"domain_scores_gemma":[0.9996568,0.00012867257,0.00005070663,0.00003482839,0.00007365356,0.000055300283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048376145,0.0008583447,0.0009884019,0.0006703888,0.00035257457,0.00039462923,0.00047748387,0.00066143676,0.0016783031],"category_scores_gemma":[0.0002603934,0.00021075962,0.00069844135,0.00064564496,0.00020703094,0.00021922792,0.00037121272,0.00065531774,0.0009974597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024346937,0.000034391804,0.00008990897,0.000023386816,0.0000061268724,0.000035101977,0.000004618701,0.000023462972,0.99925894,0.000012099376,0.00004039681,0.0004472658],"study_design_scores_gemma":[0.00001919349,0.00044210628,0.0040207873,0.0000040838927,0.00005766491,0.0004855,0.000021335247,0.0009632612,0.99207014,0.000019158653,0.0018882559,0.000008507076],"about_ca_topic_score_codex":0.00048904435,"about_ca_topic_score_gemma":0.00082282966,"teacher_disagreement_score":0.0016783031,"about_ca_system_score_codex":0.00040830832,"about_ca_system_score_gemma":0.00028358932,"threshold_uncertainty_score":0.005614519},"labels":[],"label_agreement":null},{"id":"W2104130372","doi":"10.1074/mcp.m110.004796","title":"A Novel Proteomics Approach to Identify SUMOylated Proteins and Their Modification Sites in Human Cells","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research","keywords":"Proteomics; Posttranslational modification; Computational biology; Chemistry; Cell biology; Biology; Biochemistry; Gene; Enzyme","score_opus":0.018342955700863806,"score_gpt":0.2531191773789006,"score_spread":0.2347762216780368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104130372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.50823957,0.012298804,0.46290964,0.0011257192,0.0003610735,0.00090236176,0.0033183708,0.0016695431,0.009174828],"genre_scores_gemma":[0.6076507,0.008944091,0.36506698,0.00072715606,0.00014332063,0.00064092333,0.0038836303,0.00016786283,0.012775311],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997913,0.00003153913,0.000017728262,0.00007515053,0.000059545822,0.000024658882],"domain_scores_gemma":[0.9999155,0.000016133183,0.000010191716,0.000018014487,0.00002499247,0.0000150971255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002955646,0.0003989371,0.00045957853,0.00072241836,0.000381164,0.00047369555,0.0004195543,0.00047094154,0.0014773083],"category_scores_gemma":[0.0001958283,0.00022988976,0.00033322474,0.00048486915,0.0001899424,0.0002961397,0.00039493365,0.00053431356,0.001072698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007502578,0.000019579189,0.0002543219,0.00003857561,0.0000094701345,0.000112578295,0.000022649183,0.00003923832,0.99339217,0.00018773171,0.00015475073,0.0056937765],"study_design_scores_gemma":[0.000042463827,0.00026415836,0.0051910137,0.000012272741,0.000058458136,0.0025346386,0.00005376461,0.0028617827,0.9652524,0.00042326385,0.023286453,0.000019379639],"about_ca_topic_score_codex":0.00042328192,"about_ca_topic_score_gemma":0.00085073675,"teacher_disagreement_score":0.0014773083,"about_ca_system_score_codex":0.00026144396,"about_ca_system_score_gemma":0.00028938148,"threshold_uncertainty_score":0.0049420595},"labels":[],"label_agreement":null},{"id":"W2104203125","doi":"10.1074/mcp.m900087-mcp200","title":"“ChopNSpice,” a Mass Spectrometric Approach That Allows Identification of Endogenous Small Ubiquitin-like Modifier-conjugated Peptides","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; European Commission","keywords":"SUMO protein; SUMO enzymes; Chemistry; Ubiquitin; Lysine; Conjugated system; Computational biology; Mutagenesis; Identification (biology); Biochemistry; Biology; Mutation; Gene; Amino acid","score_opus":0.0246685202131329,"score_gpt":0.21532616185613526,"score_spread":0.19065764164300236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104203125","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3557864,0.018592365,0.54186064,0.0013163445,0.00079393416,0.0015019792,0.026881926,0.031681396,0.02158497],"genre_scores_gemma":[0.31930277,0.009117308,0.6160764,0.0016309654,0.00016855387,0.0017902514,0.037330106,0.0017573417,0.012826211],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993869,0.000084074,0.00005374992,0.0001831221,0.00023147282,0.00006070889],"domain_scores_gemma":[0.9995977,0.00012888481,0.00009552455,0.0000563997,0.00006763679,0.000053698644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000801283,0.001295781,0.0010164116,0.002457238,0.00049923704,0.0008615247,0.0011151843,0.00074558944,0.004027322],"category_scores_gemma":[0.0010336102,0.0004186895,0.0007196729,0.0016799968,0.00039016418,0.0012770243,0.0013754175,0.0009626967,0.002557166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008735521,0.0001365638,0.0029025665,0.0017821541,0.00035100346,0.0011420583,0.00014126423,0.0006481011,0.83874655,0.0019056356,0.0130560445,0.13831437],"study_design_scores_gemma":[0.00014017009,0.00054148847,0.008050578,0.00007872689,0.00016879353,0.0072074155,0.000116475465,0.01697999,0.85953045,0.0014866083,0.10557197,0.0001273904],"about_ca_topic_score_codex":0.00040216823,"about_ca_topic_score_gemma":0.00082938885,"teacher_disagreement_score":0.004027322,"about_ca_system_score_codex":0.00037966715,"about_ca_system_score_gemma":0.00052429613,"threshold_uncertainty_score":0.0134727955},"labels":[],"label_agreement":null},{"id":"W2104360366","doi":"10.1074/mcp.r800014-mcp200","title":"Challenges and Rewards of Interaction Proteomics","year":2008,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Canada Research Chairs; Hospital for Sick Children","funders":"","keywords":"Proteomics; Computational biology; Computer science; Chemistry; Biology; Biochemistry","score_opus":0.03039611939014352,"score_gpt":0.2738587668869553,"score_spread":0.2434626474968118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104360366","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017275126,0.9854606,0.001823654,0.008710552,0.0009998825,0.0000046938326,0.000013893263,0.000018959654,0.0027950297],"genre_scores_gemma":[0.0025673117,0.988064,0.0017323911,0.003524018,0.0021612656,0.000017326916,0.000024356068,0.0000072877733,0.0019019718],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978248,0.00062687945,0.00014299707,0.00027312964,0.0010101201,0.00012211561],"domain_scores_gemma":[0.9947931,0.003520474,0.00022858371,0.00022237968,0.0008946347,0.00034077768],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0064824596,0.0011627072,0.001968031,0.002104408,0.00085544976,0.0030058813,0.0021339566,0.0040175696,0.0028037627],"category_scores_gemma":[0.006030506,0.00043437432,0.00049508177,0.0019435947,0.0036573347,0.008820742,0.0026933325,0.005274279,0.0029326237],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007526045,0.00006042758,0.00032318238,0.0056314417,0.00007492451,0.00056929834,0.0002427084,0.001263587,0.0017211621,0.101822875,0.08622768,0.8019874],"study_design_scores_gemma":[0.000010069529,0.000051031668,0.00042145237,0.0016107145,0.000018496252,0.0014604988,0.00023552672,0.0002990669,0.00040310877,0.06855295,0.92690897,0.000028007402],"about_ca_topic_score_codex":0.0008737856,"about_ca_topic_score_gemma":0.0009921007,"teacher_disagreement_score":0.0064824596,"about_ca_system_score_codex":0.0019981423,"about_ca_system_score_gemma":0.0020746507,"threshold_uncertainty_score":0.034282982},"labels":[],"label_agreement":null},{"id":"W2104883055","doi":"10.1074/mcp.o114.045302","title":"Nic1 Inactivation Enables Stable Isotope Labeling with 13C615N4-Arginine in Schizosaccharomyces pombe","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Cancer Research UK","keywords":"Stable isotope labeling by amino acids in cell culture; Schizosaccharomyces pombe; Biochemistry; Arginine; Chemistry; Yeast; Amino acid; Lysine; Proteomics; Saccharomyces cerevisiae","score_opus":0.00532097179432579,"score_gpt":0.21053469939442232,"score_spread":0.20521372760009654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104883055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9771279,0.0007846064,0.01645783,0.00018063732,0.0000828111,0.00007048533,0.0021842064,0.0005223904,0.0025892344],"genre_scores_gemma":[0.97744423,0.000619773,0.013375254,0.0000947683,0.0000082345905,0.000109800814,0.0026574435,0.00026316798,0.0054273065],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997676,0.000030624007,0.000025380741,0.00007864473,0.00006302346,0.000034672477],"domain_scores_gemma":[0.9998264,0.000037144913,0.000042560903,0.000030676147,0.000018647985,0.000044654902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023118133,0.0005733425,0.00036688568,0.0001791036,0.00038680516,0.00043285158,0.00044719927,0.00035749428,0.000803227],"category_scores_gemma":[0.0001883862,0.00020742454,0.0003041246,0.00020897674,0.00040708503,0.00021428274,0.000508707,0.0007096332,0.000621894],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006315305,0.000008540196,0.000079223915,0.00001907791,0.0000022708912,0.000041199088,0.000021519369,0.00008678611,0.999148,0.00010583642,0.000028257613,0.00039620476],"study_design_scores_gemma":[0.0000065431695,0.000042172116,0.00097099197,0.000003886565,0.000005943981,0.000052472536,0.000020453306,0.0013384331,0.9949993,0.000042865813,0.0025101989,0.0000068046897],"about_ca_topic_score_codex":0.0033390757,"about_ca_topic_score_gemma":0.0037507976,"teacher_disagreement_score":0.0033390757,"about_ca_system_score_codex":0.0007197761,"about_ca_system_score_gemma":0.0004099536,"threshold_uncertainty_score":0.006639302},"labels":[],"label_agreement":null},{"id":"W2104976235","doi":"10.1074/mcp.m900122-mcp200","title":"Mass Spectrometry-based Protein Profiling to Determine the Cause of Lysosomal Storage Diseases of Unknown Etiology","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Lysosomal Storage Disorders Research","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Batten Disease Support and Research Association","keywords":"Lysosome; Lysosomal storage disease; Phenotype; Biology; Proteomics; Glucocerebrosidase; Gene; Neuronal ceroid lipofuscinosis; Mannose; Batten disease; Fabry disease; Mannose 6-phosphate; Disease; Proteome; Computational biology; Biochemistry; Medicine; Pathology; Enzyme; Receptor","score_opus":0.015897138213304428,"score_gpt":0.26962781717105605,"score_spread":0.25373067895775164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104976235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9689473,0.006374467,0.019554164,0.00023541698,0.000052841,0.00009260689,0.0020585835,0.00019743873,0.0024872131],"genre_scores_gemma":[0.96702766,0.0032656777,0.026730493,0.00030901912,0.000038115355,0.00004702078,0.001572323,0.000030386993,0.0009792405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980074,0.00003327925,0.00002189933,0.00005967395,0.00006389747,0.000020497237],"domain_scores_gemma":[0.9997702,0.000060454862,0.0000685695,0.000013363653,0.000058188238,0.00002928711],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050465163,0.00048207253,0.00032079732,0.0018438982,0.00025760257,0.00032953167,0.00027228048,0.0005289145,0.00078665296],"category_scores_gemma":[0.0006393492,0.00012168464,0.00024852587,0.0010789725,0.00020447123,0.00028623996,0.00028555878,0.00031507053,0.00051123113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002193103,0.000043262993,0.015416977,0.00012222613,0.00006627788,0.00039543185,0.000050642604,0.00012022967,0.9746698,0.00017185304,0.00014911556,0.0085748155],"study_design_scores_gemma":[0.000031548574,0.00073757983,0.257318,0.00007846664,0.00034626585,0.011607766,0.0004817947,0.011533349,0.70940924,0.00080512365,0.007608519,0.000042355256],"about_ca_topic_score_codex":0.0004989521,"about_ca_topic_score_gemma":0.00071080716,"teacher_disagreement_score":0.0018438982,"about_ca_system_score_codex":0.00022506951,"about_ca_system_score_gemma":0.00016527114,"threshold_uncertainty_score":0.0026689172},"labels":[],"label_agreement":null},{"id":"W2105092815","doi":"10.1074/mcp.m113.035568","title":"Protein Profiles Associated With Context Fear Conditioning and Their Modulation by Memantine","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Neuroscience and Neuropharmacology Research","field":"Neuroscience","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Down Syndrome Research Foundation","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","keywords":"Memantine; Context (archaeology); Fear conditioning; Conditioning; Psychology; Neuroscience; Chemistry; Biology; Biochemistry; NMDA receptor; Receptor","score_opus":0.015261898569060366,"score_gpt":0.24275413168027166,"score_spread":0.22749223311121128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105092815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995271,0.0013900098,0.0010129842,0.00005487561,0.000030439098,0.000016038412,0.0013449907,0.000060977116,0.00081864337],"genre_scores_gemma":[0.9927215,0.001238712,0.0015662371,0.0001223097,0.000015670848,0.000086547225,0.0020716111,0.000028419652,0.0021490285],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998858,0.0000081370745,0.000008415879,0.000033470897,0.00002791261,0.000036257312],"domain_scores_gemma":[0.9999008,0.000009703554,0.000036173376,0.000009945696,0.00001591104,0.000027499864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008965113,0.0003069642,0.0003000414,0.00036419285,0.0001308591,0.00024423303,0.00014500375,0.00023118133,0.0009939835],"category_scores_gemma":[0.00011600416,0.00011039022,0.00032304513,0.000368963,0.00018597538,0.00014811983,0.00015733467,0.0004081468,0.0002225082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002518187,0.000017734115,0.000637719,0.000024904297,0.00001039737,0.000028540582,0.00001593814,0.000025262536,0.9981129,0.000014311812,0.000028136124,0.00083239144],"study_design_scores_gemma":[0.000011151453,0.0004147968,0.18114057,0.000009087847,0.000053185184,0.00032805977,0.000072251525,0.0007166961,0.81587696,0.0000686216,0.0012949662,0.000013526628],"about_ca_topic_score_codex":0.00065868895,"about_ca_topic_score_gemma":0.0009508957,"teacher_disagreement_score":0.0009939835,"about_ca_system_score_codex":0.00022495794,"about_ca_system_score_gemma":0.00012313352,"threshold_uncertainty_score":0.003325224},"labels":[],"label_agreement":null},{"id":"W2105696555","doi":"10.1074/mcp.r500005-mcp200","title":"Statistical and Computational Methods for Comparative Proteomic Profiling Using Liquid Chromatography-Tandem Mass Spectrometry","year":2005,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":298,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Computer science; Biomarker discovery; Profiling (computer programming); Normalization (sociology); Data mining; Proteomics; Computational biology; Chemistry; Biology","score_opus":0.05376936976033744,"score_gpt":0.40558386421177806,"score_spread":0.35181449445144064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105696555","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007517518,0.003645236,0.99222034,0.00039075688,0.00014372112,0.00008454159,0.00071021804,0.0013449733,0.0007085582],"genre_scores_gemma":[0.018540861,0.006923724,0.9678429,0.00048141085,0.00046341665,0.0010210555,0.0031322523,0.0009258099,0.00066852063],"study_design_codex":"simulation_or_modeling","study_design_gemma":"not_applicable","domain_scores_codex":[0.9929523,0.003506844,0.0006150419,0.00087304524,0.0018922036,0.00016052806],"domain_scores_gemma":[0.97368014,0.021839047,0.0010562121,0.001275839,0.0019218606,0.00022680184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013502163,0.002862786,0.003521979,0.0047601126,0.0007876633,0.004001874,0.0052742893,0.002190045,0.0049614375],"category_scores_gemma":[0.035503592,0.0011713521,0.0035917487,0.00513692,0.001908375,0.0031968746,0.0031290771,0.004755024,0.0026732984],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002599072,0.00018542747,0.0033750338,0.0052315616,0.0017750984,0.00045933845,0.0002451156,0.43965885,0.006227035,0.1994757,0.024294011,0.31881282],"study_design_scores_gemma":[0.000039148767,0.000073857205,0.0010052777,0.00023931652,0.00014635418,0.00014305336,0.000054036012,0.7885278,0.0016877739,0.1875339,0.020458499,0.0000910428],"about_ca_topic_score_codex":0.0044641737,"about_ca_topic_score_gemma":0.0036911813,"teacher_disagreement_score":0.013502163,"about_ca_system_score_codex":0.0017950927,"about_ca_system_score_gemma":0.0037093794,"threshold_uncertainty_score":0.07140714},"labels":[],"label_agreement":null},{"id":"W2106127270","doi":"10.1074/mcp.m400182-mcp200","title":"Proteome Dynamics during C2C12 Myoblast Differentiation","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"C2C12; Myogenesis; Proteome; Biology; Myocyte; Skeletal muscle; Cell biology; Computational biology; Transcriptome; Cellular differentiation; Gene expression; Bioinformatics; Genetics; Gene; Anatomy","score_opus":0.002658611691218691,"score_gpt":0.1892939599591118,"score_spread":0.1866353482678931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106127270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948666,0.0011578994,0.0017842782,0.000055228833,0.000007682333,0.000011565371,0.0011883215,0.000051709012,0.0008766672],"genre_scores_gemma":[0.98867106,0.0016024039,0.003192586,0.00010797726,0.000009187515,0.000064748776,0.0028355343,0.000047038982,0.0034694197],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998994,0.000007157302,0.0000052827313,0.000029221197,0.000041044077,0.000018023546],"domain_scores_gemma":[0.9998883,0.000018513294,0.000022546916,0.000005330628,0.00003634204,0.000028991622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014010287,0.00018375603,0.00025360886,0.00042745296,0.00027736987,0.00050592894,0.00015825382,0.00021660436,0.0004975966],"category_scores_gemma":[0.0002021096,0.00015666235,0.00012557198,0.00044340844,0.00021483548,0.00022567548,0.00024993188,0.0003891803,0.00030539228],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014871376,0.000008237215,0.0013786205,0.000039372804,0.000007939117,0.00005467593,0.00007023012,0.00008780566,0.9962543,0.00006258877,0.00007364344,0.001813825],"study_design_scores_gemma":[0.000017435412,0.00015717107,0.18113631,0.000024069242,0.000040632134,0.00032351093,0.00029684172,0.0030938904,0.8104901,0.00017472323,0.0042167795,0.00002852877],"about_ca_topic_score_codex":0.0025510094,"about_ca_topic_score_gemma":0.0035816825,"teacher_disagreement_score":0.0025510094,"about_ca_system_score_codex":0.00044221996,"about_ca_system_score_gemma":0.00026167263,"threshold_uncertainty_score":0.0050723553},"labels":[],"label_agreement":null},{"id":"W2106284801","doi":"10.1074/mcp.m111.014688","title":"Metabolomics of Human Cerebrospinal Fluid Identifies Signatures of Malignant Glioma","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Cancer Institute","keywords":"Metabolomics; Cerebrospinal fluid; Glioma; Computational biology; Glioblastoma; Pathology; Medicine; Cancer research; Biology; Bioinformatics","score_opus":0.009822214880633388,"score_gpt":0.2444365331454165,"score_spread":0.2346143182647831,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106284801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951906,0.0010335163,0.0026709363,0.000055232653,0.000011917227,0.000028540593,0.00059769,0.000036021138,0.00037560315],"genre_scores_gemma":[0.9937403,0.0008302752,0.0039490513,0.00007191065,0.000011113711,0.000028101618,0.0009647155,0.000011492258,0.0003930043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986374,0.000029815345,0.000009264743,0.00003226859,0.000040151095,0.000024699457],"domain_scores_gemma":[0.99991286,0.000017193515,0.000028967375,0.000007631411,0.00002051796,0.000012865171],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012194657,0.00033409827,0.0002253044,0.00053363584,0.00016965225,0.00032771175,0.00009613898,0.00022190184,0.00039324575],"category_scores_gemma":[0.000324417,0.000084572064,0.00017776396,0.0003936553,0.00017373486,0.00011335473,0.0002081322,0.00015906623,0.00014771531],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010148094,0.000047735608,0.028149558,0.000080182464,0.000061195315,0.00024205641,0.000122276,0.00018436839,0.95519733,0.00005281704,0.00010299825,0.014744669],"study_design_scores_gemma":[0.00003566574,0.0014711043,0.30362818,0.000028364866,0.00014502044,0.002649294,0.0003700378,0.003419344,0.6853118,0.00030360318,0.002597258,0.00004025521],"about_ca_topic_score_codex":0.00063222216,"about_ca_topic_score_gemma":0.0008469441,"teacher_disagreement_score":0.00063222216,"about_ca_system_score_codex":0.0001221245,"about_ca_system_score_gemma":0.00014559591,"threshold_uncertainty_score":0.0013155341},"labels":[],"label_agreement":null},{"id":"W2107889651","doi":"10.1074/mcp.m900273-mcp200","title":"PhosSNP for Systematic Analysis of Genetic Polymorphisms That Influence Protein Phosphorylation","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Center for Advancing Translational Sciences; Canadian Institutes of Health Research","keywords":"Phosphorylation; Computational biology; Genetic analysis; Protein phosphorylation; Genetics; Biology; Gene; Protein kinase A","score_opus":0.0071376900387810855,"score_gpt":0.2194892178919861,"score_spread":0.21235152785320502,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107889651","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21595204,0.0038629672,0.42703286,0.0010080623,0.0014437737,0.0018419162,0.25855312,0.0781348,0.012170411],"genre_scores_gemma":[0.3475852,0.0014255627,0.4212152,0.0011111854,0.000329144,0.0040040324,0.20325583,0.011649705,0.00942412],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985481,0.00029987376,0.0001391032,0.0005865773,0.00032455238,0.00010170352],"domain_scores_gemma":[0.9985563,0.0007878784,0.00021883976,0.0002041103,0.00010025562,0.00013268075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022880905,0.0012255237,0.0014745515,0.0023268003,0.00091059646,0.0010787778,0.0013245228,0.000992286,0.017270392],"category_scores_gemma":[0.0044925436,0.0006529058,0.0017569956,0.002111371,0.00050434895,0.0006031923,0.0015080781,0.0015640194,0.0048128734],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009738797,0.0009078721,0.15958942,0.0076378575,0.0044299755,0.008885808,0.0016690762,0.015938027,0.2461425,0.020299198,0.2058183,0.31894323],"study_design_scores_gemma":[0.0030456113,0.0023071822,0.17654495,0.0010194844,0.00294431,0.0061906017,0.0006109068,0.17656672,0.10348785,0.03810301,0.4886668,0.0005125309],"about_ca_topic_score_codex":0.0018771135,"about_ca_topic_score_gemma":0.0036870383,"teacher_disagreement_score":0.017270392,"about_ca_system_score_codex":0.00032749466,"about_ca_system_score_gemma":0.0017684468,"threshold_uncertainty_score":0.0577752},"labels":[],"label_agreement":null},{"id":"W2107954317","doi":"10.1074/mcp.m112.027078","title":"Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reaction Monitoring-MS (LC-MRM-MS)","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Analytical Chemistry and Chromatography","field":"Chemistry","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Center for Research Resources; National Cancer Institute; University of California, San Francisco; University of North Carolina at Chapel Hill; Broad Institute; Lawrence Berkeley National Laboratory; University of Victoria; University of Arizona; University of Washington; School of Medicine, Vanderbilt University; Buck Institute for Research on Aging; Purdue University; U.S. Public Health Service; Canary Foundation; National Institute of General Medical Sciences; Massachusetts General Hospital; Memorial Sloan-Kettering Cancer Center; York University; National Institute of Standards and Technology; Vanderbilt University","keywords":"Analyte; Selected reaction monitoring; Chromatography; Triple quadrupole mass spectrometer; Coefficient of variation; Chemistry; Multiplex; Mass spectrometry; Protocol (science); Liquid chromatography–mass spectrometry; Analytical Chemistry (journal); Tandem mass spectrometry; Bioinformatics","score_opus":0.039796300518140315,"score_gpt":0.33017846522551986,"score_spread":0.29038216470737954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107954317","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.122998446,0.0005160136,0.8358796,0.00028718635,0.00020549782,0.03260065,0.000784943,0.004280078,0.0024476072],"genre_scores_gemma":[0.1482552,0.00042094753,0.812786,0.0003667636,0.0000735718,0.03279669,0.0024257852,0.00062513247,0.0022499221],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98086333,0.0055577764,0.0025841107,0.0031134037,0.0069765868,0.00090475474],"domain_scores_gemma":[0.9814135,0.0035497686,0.0024345373,0.0029901075,0.008874215,0.0007379943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.027715566,0.0018732598,0.0011188623,0.0020176212,0.0013896741,0.0027602871,0.0022789652,0.0014893308,0.0022507054],"category_scores_gemma":[0.018581819,0.00106855,0.0010326913,0.0010486011,0.002395852,0.0016884315,0.0023944732,0.0015325593,0.0022244565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011461404,0.0009574589,0.008841239,0.00081293366,0.00018060963,0.0003523264,0.00070085545,0.007382011,0.8997237,0.0034059188,0.0019130714,0.074583724],"study_design_scores_gemma":[0.00017399798,0.005086194,0.0070401216,0.00009417305,0.00016641399,0.000509186,0.00017960314,0.027736843,0.94030917,0.0007864241,0.01772681,0.00019106352],"about_ca_topic_score_codex":0.001071649,"about_ca_topic_score_gemma":0.0011984502,"teacher_disagreement_score":0.027715566,"about_ca_system_score_codex":0.0016285782,"about_ca_system_score_gemma":0.0054116487,"threshold_uncertainty_score":0.14657569},"labels":[],"label_agreement":null},{"id":"W2108205165","doi":"10.1074/mcp.m114.046375","title":"RNA Interference Screen to Identify Kinases That Suppress Rescue of ΔF508-CFTR*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"ΔF508; Cystic fibrosis transmembrane conductance regulator; Gene knockdown; Biology; Cystic fibrosis; Cell biology; Molecular biology; Endoplasmic reticulum; Chloride channel; Genetics; Gene","score_opus":0.04646874690643888,"score_gpt":0.3379241683530921,"score_spread":0.2914554214466532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108205165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95719707,0.004801242,0.021703027,0.0003099668,0.0002301023,0.001055759,0.0070205186,0.0008885043,0.006793805],"genre_scores_gemma":[0.9401923,0.0038518126,0.03175956,0.00038555337,0.000058122263,0.0008680512,0.011521672,0.00024894977,0.011113958],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999726,0.000029318759,0.00004512469,0.000066885565,0.0000920692,0.000040455834],"domain_scores_gemma":[0.99982685,0.0000651413,0.000037547783,0.000016693299,0.000025137953,0.000028674074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000273232,0.0006287795,0.0006920192,0.00045282338,0.00022418241,0.00031752605,0.00039565854,0.00044027038,0.001850013],"category_scores_gemma":[0.00017176224,0.00023929503,0.00046941862,0.00038114094,0.00016332479,0.000094049705,0.00017170543,0.00047821132,0.00075202767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031556545,0.00003590402,0.00007295134,0.000026761621,0.000008668769,0.0000670794,0.000006496659,0.000050361465,0.9986533,0.000041817828,0.00007304985,0.00093195646],"study_design_scores_gemma":[0.000044238048,0.0006404381,0.0025896137,0.0000064693522,0.00007125268,0.0005346939,0.000017833483,0.0015308948,0.9874681,0.000025492403,0.0070620705,0.00000887735],"about_ca_topic_score_codex":0.0005579037,"about_ca_topic_score_gemma":0.0014332006,"teacher_disagreement_score":0.001850013,"about_ca_system_score_codex":0.00030134176,"about_ca_system_score_gemma":0.00023443025,"threshold_uncertainty_score":0.0061888695},"labels":[],"label_agreement":null},{"id":"W2108580588","doi":"10.1074/mcp.m500415-mcp200","title":"Differential Expression Profiling of the Hepatic Proteome in a Rat Model of Dioxin Resistance","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Toxic Organic Pollutants Impact","field":"Environmental Science","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Proteome; Toxicity; Protein disulfide-isomerase; Proteomics; Chemistry; Transcriptome; Glutathione; Molecular biology; Gene expression; Gel electrophoresis; Oxidative stress; Gene isoform; Biology; Biochemistry; Gene; Enzyme","score_opus":0.005553227050251565,"score_gpt":0.18816118139477342,"score_spread":0.18260795434452184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108580588","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968772,0.00043211607,0.0016542474,0.00006139262,0.000021172738,0.000021725704,0.0004440827,0.000046331857,0.0004417536],"genre_scores_gemma":[0.9922788,0.0007368681,0.0028211935,0.000080349506,0.000012856325,0.000064477055,0.0012722557,0.000032303844,0.0027008194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999841,0.000019107734,0.000011223253,0.000048380967,0.000032332417,0.000048047237],"domain_scores_gemma":[0.9998455,0.000015870593,0.000041243697,0.000022129616,0.000026580878,0.00004869215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015164848,0.00039030143,0.00030496693,0.00064068876,0.00017394489,0.00024703966,0.00017788213,0.00025357233,0.0007475986],"category_scores_gemma":[0.000113640664,0.00018133267,0.00029317348,0.00037909587,0.0002691851,0.0001870597,0.00022927902,0.00053222803,0.00031209824],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027033334,0.000032242806,0.00054285344,0.000012201756,0.0000067078154,0.000039805742,0.000013236195,0.000025977937,0.9986124,0.000020791547,0.000014436152,0.00040892677],"study_design_scores_gemma":[0.0000370581,0.0013309058,0.051120788,0.000005263159,0.00007648316,0.0005630151,0.0001297324,0.0010111528,0.94443846,0.00009160813,0.0011795638,0.000015991596],"about_ca_topic_score_codex":0.00080353674,"about_ca_topic_score_gemma":0.001001471,"teacher_disagreement_score":0.00080353674,"about_ca_system_score_codex":0.00024909998,"about_ca_system_score_gemma":0.00017442972,"threshold_uncertainty_score":0.0025009513},"labels":[],"label_agreement":null},{"id":"W2109048736","doi":"10.1074/mcp.m112.025569","title":"Targeted Identification of SUMOylation Sites in Human Proteins Using Affinity Enrichment and Paralog-specific Reporter Ions","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"SUMO protein; Electron-transfer dissociation; Chemistry; Peptide; Biochemistry; Tandem mass spectrometry; Fragmentation (computing); HEK 293 cells; Proteomics; Biology; Computational biology; Molecular biology; Mass spectrometry; Ubiquitin; Gene","score_opus":0.01851041186366454,"score_gpt":0.24257470038559623,"score_spread":0.2240642885219317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109048736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88133293,0.0022017346,0.111138634,0.0003604739,0.0000555045,0.0002515009,0.002132079,0.00062199,0.0019051743],"genre_scores_gemma":[0.86820906,0.002728103,0.11708219,0.00040902797,0.000028216606,0.00026534198,0.0062369825,0.00019889008,0.004842203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99959654,0.000056895457,0.00003606665,0.00012543391,0.00011546051,0.00006956911],"domain_scores_gemma":[0.9997863,0.000052354404,0.000051977604,0.000028301834,0.000041356343,0.0000396994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005007813,0.00050153985,0.00037201706,0.00044149254,0.00030236167,0.0004026865,0.0004511517,0.00049015606,0.0013124151],"category_scores_gemma":[0.0003261953,0.00022728811,0.00044953005,0.00048805343,0.00026285736,0.0002701526,0.00040547,0.0006383546,0.0010743247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007435572,0.000020759353,0.00030557768,0.00003430243,0.000009215527,0.000054877837,0.000019691879,0.00005131775,0.9977871,0.0000777264,0.000053146327,0.0015120349],"study_design_scores_gemma":[0.0000124217995,0.000090733956,0.003077483,0.000004896758,0.000016574084,0.00047456552,0.000023835244,0.0015838634,0.9912544,0.000075753596,0.0033785831,0.000006912863],"about_ca_topic_score_codex":0.0005571579,"about_ca_topic_score_gemma":0.0011270016,"teacher_disagreement_score":0.0013124151,"about_ca_system_score_codex":0.0004299427,"about_ca_system_score_gemma":0.00033545293,"threshold_uncertainty_score":0.0043904185},"labels":[],"label_agreement":null},{"id":"W2109331497","doi":"10.1074/mcp.m700245-mcp200","title":"Comparative Proteomics Profiling of a Phospholamban Mutant Mouse Model of Dilated Cardiomyopathy Reveals Progressive Intracellular Stress Responses","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cardiomyopathy and Myosin Studies","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Heart and Stroke Foundation; University of Toronto","funders":"","keywords":"Phospholamban; Heart failure; Shotgun proteomics; Proteomics; Biology; Cell biology; ATF6; Cardiomyopathy; Endoplasmic reticulum; Dilated cardiomyopathy; Internal medicine; Endocrinology; Medicine; Unfolded protein response; Genetics; Gene","score_opus":0.02234166243449863,"score_gpt":0.27829587785989107,"score_spread":0.25595421542539243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109331497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99784017,0.00032817284,0.0011371063,0.00002881386,0.0000082017905,0.00001129224,0.00040438116,0.000027525835,0.00021439708],"genre_scores_gemma":[0.99278367,0.0006418563,0.0033007886,0.00008309197,0.000009727928,0.00005928418,0.0014451252,0.000032694843,0.0016438048],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999879,0.00001375192,0.000012497966,0.000041175437,0.0000282894,0.000025250438],"domain_scores_gemma":[0.99984074,0.000020534078,0.00005039265,0.000013827232,0.000019688778,0.000054735036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015542678,0.0003626153,0.00028658044,0.0005666572,0.00016690516,0.00023007482,0.00014534067,0.00030058625,0.00056236406],"category_scores_gemma":[0.000110981906,0.00016644632,0.00028341956,0.00021728301,0.00019674988,0.00016282317,0.00015457769,0.00040696803,0.00016474689],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011431262,0.000013170692,0.00052754756,0.000010410332,0.000005857616,0.000042786243,0.000010560132,0.000012905567,0.99899906,0.000011263642,0.000008881827,0.00024322032],"study_design_scores_gemma":[0.000030582833,0.0010549322,0.1357899,0.000013312509,0.00009264768,0.0015911602,0.00013024066,0.0011699345,0.85863113,0.00014003398,0.0013416206,0.000014590705],"about_ca_topic_score_codex":0.00022855286,"about_ca_topic_score_gemma":0.0003878444,"teacher_disagreement_score":0.0005666572,"about_ca_system_score_codex":0.000171011,"about_ca_system_score_gemma":0.000083301675,"threshold_uncertainty_score":0.0018813014},"labels":[],"label_agreement":null},{"id":"W2109632370","doi":"10.1074/mcp.m500298-mcp200","title":"Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":278,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Università degli Studi di Padova; Fondazione Telethon; Danmarks Grundforskningsfond; National Research Foundation","keywords":"Mitochondrion; Biology; Intermembrane space; Skeletal muscle; Proteome; Proteomics; Organelle; Oxidative phosphorylation; Cell biology; Submitochondrial particle; Biochemistry; Gene; Bacterial outer membrane; Anatomy","score_opus":0.011687446476038603,"score_gpt":0.2620827656071156,"score_spread":0.250395319131077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109632370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98944354,0.0029509491,0.0046433066,0.00009760376,0.000047129728,0.00004141507,0.0014488217,0.00008431465,0.0012428599],"genre_scores_gemma":[0.9619874,0.004826964,0.020267291,0.00023549938,0.00006472257,0.0001760473,0.008065017,0.000090567824,0.0042865095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980205,0.000024535522,0.000018493203,0.000057507164,0.000059239122,0.000038226466],"domain_scores_gemma":[0.9997296,0.00005229385,0.0000623565,0.000019608473,0.00009520907,0.00004098853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033333278,0.00042745986,0.00027100163,0.0009530522,0.0002199496,0.0002672419,0.00019962231,0.0002222099,0.00055661815],"category_scores_gemma":[0.00036176917,0.00016839565,0.00033672142,0.0004943016,0.00018461602,0.00018594967,0.00024797794,0.00026844878,0.00028555878],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019780346,0.000017855615,0.0011889472,0.000072833645,0.000024769153,0.00004903563,0.000032715307,0.000029788023,0.99650025,0.000045435696,0.000033618617,0.001806866],"study_design_scores_gemma":[0.000044823995,0.00096867065,0.21055336,0.000041126103,0.00029337633,0.0015513999,0.0002825507,0.0016151965,0.7801038,0.00016854385,0.004348383,0.000028754352],"about_ca_topic_score_codex":0.00082451873,"about_ca_topic_score_gemma":0.0015237079,"teacher_disagreement_score":0.0009530522,"about_ca_system_score_codex":0.00014306752,"about_ca_system_score_gemma":0.00024562553,"threshold_uncertainty_score":0.0018620491},"labels":[],"label_agreement":null},{"id":"W2110287117","doi":"10.1074/mcp.m112.023416","title":"System-wide Analysis Reveals Intrinsically Disordered Proteins Are Prone to Ubiquitylation after Misfolding Stress","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Ubiquitin; Intrinsically disordered proteins; Protein folding; Cell biology; Stress (linguistics); Chemistry; Computational biology; Biology; Biophysics; Biochemistry; Gene","score_opus":0.0055015576441297285,"score_gpt":0.20356851970265039,"score_spread":0.19806696205852065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110287117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995989,0.00031214915,0.0029057707,0.000044740875,0.0000071113445,0.000009799084,0.00045739804,0.00011671917,0.00015730325],"genre_scores_gemma":[0.9958192,0.00011367308,0.0019316794,0.00002764546,0.0000037001807,0.000017426979,0.0019876685,0.000015961223,0.00008296276],"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980253,0.000047949266,0.000012715776,0.00008843586,0.00002627724,0.000022176306],"domain_scores_gemma":[0.9995309,0.00023983327,0.000084590916,0.000041944004,0.000055174012,0.000047526606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006026335,0.00036711592,0.0006155372,0.00055641547,0.00031788982,0.00054400554,0.00030940614,0.00032517253,0.00038738432],"category_scores_gemma":[0.00085258007,0.00013761736,0.000821425,0.0005617386,0.00027850215,0.00024728474,0.00032410634,0.00037004674,0.00005776243],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016796081,0.0008208613,0.3026628,0.0012920017,0.0036858567,0.0011733775,0.00030784827,0.41976133,0.22730874,0.0031117082,0.0030402693,0.035155725],"study_design_scores_gemma":[0.000033310105,0.00035925786,0.19442473,0.000010425353,0.00033824905,0.00019232529,0.00010687541,0.79198134,0.009875564,0.0017188429,0.00091361563,0.000045465295],"about_ca_topic_score_codex":0.0022190055,"about_ca_topic_score_gemma":0.0019288274,"teacher_disagreement_score":0.0022190055,"about_ca_system_score_codex":0.00041329957,"about_ca_system_score_gemma":0.00028429588,"threshold_uncertainty_score":0.004412234},"labels":[],"label_agreement":null},{"id":"W2110625124","doi":"10.1074/mcp.m114.038596","title":"Proteomic Analysis of the Epidermal Growth Factor Receptor (EGFR) Interactome and Post-translational Modifications Associated with Receptor Endocytosis in Response to EGF and Stress","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Princess Margaret Cancer Centre; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Internalization; Endocytosis; Cell biology; Phosphorylation; Epidermal growth factor; Epidermal growth factor receptor; Anisomycin; Ubiquitin; Clathrin; Chemistry; Biology; Cancer research; Receptor; Kinase; Biochemistry","score_opus":0.0081727951160477,"score_gpt":0.21949781778215977,"score_spread":0.21132502266611206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110625124","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922984,0.002121876,0.0031778186,0.00008564724,0.000034029737,0.000037712703,0.0011667726,0.00004329023,0.0010343378],"genre_scores_gemma":[0.97509104,0.004415625,0.009908403,0.0002672859,0.00004759761,0.00014635726,0.0047096047,0.00004581059,0.005368283],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999026,0.0000074589043,0.0000070356177,0.000023826444,0.000033962526,0.000025111221],"domain_scores_gemma":[0.9999372,0.000007056457,0.000016712425,0.0000034755249,0.000017886077,0.000017690583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015283274,0.00033511492,0.00037386618,0.00055978965,0.0003458785,0.000293856,0.00020385395,0.0002923576,0.00059497874],"category_scores_gemma":[0.000112080736,0.0001545018,0.00045217833,0.00044819212,0.00014159876,0.0002704116,0.0002311388,0.00034956355,0.00029259128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007953319,0.000014624673,0.000595653,0.00004258997,0.000013961005,0.00007735161,0.00002269503,0.000021227637,0.99839216,0.000038815717,0.00003326131,0.00066817965],"study_design_scores_gemma":[0.000021654007,0.00037586092,0.20064077,0.000030405488,0.00013282282,0.0021990833,0.0003637378,0.0035344393,0.78624946,0.00020875389,0.0062048263,0.000038159513],"about_ca_topic_score_codex":0.00074674666,"about_ca_topic_score_gemma":0.0010305003,"teacher_disagreement_score":0.00074674666,"about_ca_system_score_codex":0.0002622223,"about_ca_system_score_gemma":0.00020630776,"threshold_uncertainty_score":0.001990378},"labels":[],"label_agreement":null},{"id":"W2111297939","doi":"10.1074/mcp.m400200-mcp200","title":"Active Kinase Proteome Screening Reveals Novel Signal Complexity in Cardiomyopathy","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cardiomyopathy and Myosin Studies","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"Canadian Institutes of Health Research; Heart and Stroke Foundation of Canada","keywords":"Proteome; Proteomics; Kinase; Computational biology; Protein kinase A; Biology; Phosphorylation; MAP2K7; Cell biology; Cyclin-dependent kinase 2; Biochemistry","score_opus":0.037852931569154806,"score_gpt":0.269845817361941,"score_spread":0.2319928857927862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111297939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841542,0.0019911195,0.011960626,0.0001787545,0.00004498615,0.00004289085,0.0006198774,0.00011397023,0.00089363917],"genre_scores_gemma":[0.9852514,0.0011810827,0.011091373,0.00015514552,0.000031513864,0.000043583546,0.0011704696,0.00003725162,0.00103818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998135,0.000033230197,0.000018403302,0.000045134017,0.00005289771,0.000036914258],"domain_scores_gemma":[0.99979764,0.000058165424,0.0000517372,0.000015364256,0.00003424659,0.000042918033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036018447,0.00044133162,0.00035311765,0.0008199188,0.00020232223,0.00038789393,0.00021372263,0.00037697336,0.0008105004],"category_scores_gemma":[0.00030376154,0.00016997919,0.0003546422,0.000317336,0.000271052,0.00026859753,0.00028489743,0.00052524876,0.00027321483],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012471664,0.000015954141,0.0008275361,0.000034380486,0.0000076138754,0.000113216905,0.000017537912,0.000045237488,0.99769056,0.00006157023,0.000026681797,0.0010349496],"study_design_scores_gemma":[0.000025214127,0.000499136,0.092493504,0.000019685627,0.00008485594,0.0025358915,0.00010840041,0.003520255,0.8977589,0.0006173999,0.0023154884,0.000021177419],"about_ca_topic_score_codex":0.00020694708,"about_ca_topic_score_gemma":0.00033448866,"teacher_disagreement_score":0.0008199188,"about_ca_system_score_codex":0.00016947974,"about_ca_system_score_gemma":0.000111094574,"threshold_uncertainty_score":0.0027114153},"labels":[],"label_agreement":null},{"id":"W2111432604","doi":"10.1074/mcp.m112.021881","title":"Coomassie Blue as a Near-infrared Fluorescent Stain: A Systematic Comparison With Sypro Ruby for In-gel Protein Detection","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Marianopolis College","funders":"Canadian Institutes of Health Research","keywords":"Fluorescence; Chemistry; Chromatography; Coomassie Brilliant Blue; Stain; Mass spectrometry; Fluorescent labelling; Staining; Pathology; Medicine","score_opus":0.006703134724495807,"score_gpt":0.22871091541722322,"score_spread":0.22200778069272742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111432604","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4382345,0.18830518,0.35793626,0.0011506648,0.00075551873,0.0011252194,0.001003484,0.0016652629,0.009823838],"genre_scores_gemma":[0.4373116,0.100386456,0.44917876,0.0009314928,0.00031575406,0.0011670832,0.0027613558,0.0016863794,0.006261135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9909827,0.002637646,0.0008561003,0.0015196305,0.0036976673,0.0003062074],"domain_scores_gemma":[0.9931142,0.0029475254,0.0013368711,0.0006465728,0.0017246036,0.00023037933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0061269207,0.0021977527,0.001988373,0.0048020873,0.001067073,0.0023443978,0.0016241489,0.0016003577,0.00092988356],"category_scores_gemma":[0.0065715984,0.0009909973,0.0009706602,0.0033093684,0.0016954739,0.001811735,0.0013859167,0.0017051195,0.0009870275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016599798,0.00008997403,0.0008066917,0.001758309,0.00009593054,0.00014310343,0.00013504476,0.00019829423,0.9752584,0.0002692954,0.00021576509,0.020863239],"study_design_scores_gemma":[0.00001418023,0.00059023645,0.006171545,0.00014902258,0.00017635713,0.0019328943,0.00009896258,0.0013632125,0.9781049,0.00023803547,0.011094784,0.000065874454],"about_ca_topic_score_codex":0.0010459243,"about_ca_topic_score_gemma":0.002557813,"teacher_disagreement_score":0.0061269207,"about_ca_system_score_codex":0.00096044573,"about_ca_system_score_gemma":0.0012274437,"threshold_uncertainty_score":0.032402694},"labels":[],"label_agreement":null},{"id":"W2111615912","doi":"10.1074/mcp.o110.006387","title":"Interpretation of data underlying the link between CCD and an invertebrate iridescent virus","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Iridescence; Interpretation (philosophy); Link (geometry); Biology; Invertebrate; Computational biology; Computer science; Ecology","score_opus":0.14959761500132887,"score_gpt":0.304897842000038,"score_spread":0.15530022699870913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111615912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96211624,0.002558518,0.01708315,0.00078386796,0.00047008193,0.00026059287,0.0045491895,0.00020522735,0.011973203],"genre_scores_gemma":[0.9842951,0.00089704833,0.007873869,0.0003578773,0.000051793515,0.00009080332,0.004032487,0.000026493279,0.0023745273],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995957,0.000066034394,0.0000480066,0.00010042517,0.00009990065,0.00008995866],"domain_scores_gemma":[0.9990007,0.00029509325,0.00014834273,0.00023567534,0.00023241328,0.00008770554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008933805,0.00063314533,0.00035623598,0.0010185203,0.0007414794,0.0008258684,0.00069014146,0.0008141719,0.0044900468],"category_scores_gemma":[0.001630479,0.0001784446,0.00058664515,0.0006426034,0.0007131097,0.00046871885,0.00026938334,0.001080467,0.0010606813],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012754794,0.00012204264,0.013073602,0.000305964,0.00009069656,0.0014355994,0.00009754729,0.00020033563,0.9761263,0.0010425036,0.00048296433,0.0057470193],"study_design_scores_gemma":[0.00006703312,0.00051236025,0.0840937,0.000040588337,0.00020790314,0.0036999884,0.0003798938,0.0027121725,0.89674073,0.0018212014,0.009698621,0.000025816005],"about_ca_topic_score_codex":0.0023686737,"about_ca_topic_score_gemma":0.0014477342,"teacher_disagreement_score":0.0044900468,"about_ca_system_score_codex":0.0007873275,"about_ca_system_score_gemma":0.000575376,"threshold_uncertainty_score":0.015020728},"labels":[],"label_agreement":null},{"id":"W2111848211","doi":"10.1074/mcp.m112.025221","title":"Nepenthesin from Monkey Cups for Hydrogen/Deuterium Exchange Mass Spectrometry","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Mass spectrometry; Deuterium; Hydrogen–deuterium exchange; Chemistry; Hydrogen; Chromatography; Physics; Nuclear physics; Organic chemistry","score_opus":0.012581440057439372,"score_gpt":0.23375503605779935,"score_spread":0.22117359600035996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111848211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8670756,0.009918952,0.103128515,0.0006474063,0.00029389444,0.001028593,0.006943255,0.0009780169,0.009985842],"genre_scores_gemma":[0.79316264,0.008848215,0.14837778,0.00045402447,0.00011482788,0.0010820903,0.022823319,0.000541305,0.02459584],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988484,0.000019739375,0.000008482605,0.000031532156,0.000038266036,0.000017140335],"domain_scores_gemma":[0.99990165,0.000023256775,0.000016901713,0.000020517222,0.000018881712,0.000018830517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023249966,0.00075130956,0.00034071927,0.00039757448,0.0003356991,0.00033753522,0.0002523806,0.00040999716,0.002059994],"category_scores_gemma":[0.00018465704,0.00015674334,0.00028660696,0.00035806728,0.0002299119,0.00026210735,0.00041846107,0.0006943445,0.0016897918],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006777894,0.000011842415,0.00009462342,0.00004397323,0.0000042374204,0.00007516009,0.000013673944,0.000036726608,0.9976163,0.00004769854,0.00006632519,0.0019216978],"study_design_scores_gemma":[0.000022245236,0.0001675108,0.0036865787,0.000024275167,0.00001809208,0.0006098579,0.000036074405,0.00079672184,0.9689469,0.00011597503,0.025564933,0.000010734179],"about_ca_topic_score_codex":0.00030785517,"about_ca_topic_score_gemma":0.0005939674,"teacher_disagreement_score":0.002059994,"about_ca_system_score_codex":0.00017741647,"about_ca_system_score_gemma":0.0001790341,"threshold_uncertainty_score":0.00689137},"labels":[],"label_agreement":null},{"id":"W2112257999","doi":"10.1074/mcp.m800447-mcp200","title":"A Novel Proteomics Approach for the Discovery of Chromatin-associated Protein Networks","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Cancer Institute; University of Ottawa; Ontario Genomics Institute; Ontario Genomics; Canadian Institutes of Health Research; Government of Ontario","keywords":"Chromatin; Tandem affinity purification; Histone; Computational biology; Proteomics; ChIA-PET; ChIP-on-chip; DNA; Biology; Chemistry; Cell biology; Chromatin remodeling; Biochemistry; Affinity chromatography; Gene","score_opus":0.00919157446509657,"score_gpt":0.19341057972043935,"score_spread":0.18421900525534277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112257999","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17019643,0.02168863,0.7984953,0.0021765928,0.0004556577,0.00032783335,0.0013098416,0.0011547413,0.00419495],"genre_scores_gemma":[0.43636844,0.016564589,0.53680944,0.0011558341,0.00028540916,0.0004136434,0.0019462521,0.00010384817,0.006352551],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99968565,0.000043136475,0.000015286729,0.00011717249,0.00011106678,0.000027745733],"domain_scores_gemma":[0.99989784,0.00002905736,0.000014789563,0.000016649425,0.000020636611,0.000021016278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042676646,0.0006515833,0.00065614143,0.0010910867,0.00038087796,0.0007194463,0.00069145253,0.00054850854,0.00087414024],"category_scores_gemma":[0.00028225494,0.00031932566,0.0005382641,0.0006145604,0.0004425723,0.0008427608,0.0006532743,0.0011220152,0.0005222609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029006422,0.000023748387,0.00021156819,0.00012522166,0.000039217324,0.00009423768,0.000019171195,0.00018819506,0.98444486,0.0019928848,0.00024853076,0.012583449],"study_design_scores_gemma":[0.00007076469,0.00034062844,0.0058864746,0.000031678515,0.00011264799,0.002491365,0.000052885644,0.017938808,0.9158271,0.0054876693,0.05168422,0.00007576364],"about_ca_topic_score_codex":0.00061420555,"about_ca_topic_score_gemma":0.0011909844,"teacher_disagreement_score":0.0010910867,"about_ca_system_score_codex":0.00054229377,"about_ca_system_score_gemma":0.00038226548,"threshold_uncertainty_score":0.0039346814},"labels":[],"label_agreement":null},{"id":"W2112509710","doi":"10.1074/mcp.m200050-mcp200","title":"Multiple Sclerosis","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":200,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"National Science Foundation","keywords":"Multiple sclerosis; Chemistry; Medicine; Immunology","score_opus":0.012054206555109184,"score_gpt":0.197909404292428,"score_spread":0.18585519773731882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112509710","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.123352654,0.09901971,0.009849509,0.015797062,0.0038841045,0.0008089269,0.02263632,0.00316557,0.7214861],"genre_scores_gemma":[0.41140056,0.047307607,0.011559861,0.010318708,0.002041409,0.0007797598,0.031990997,0.00032336084,0.4842778],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997757,0.00004396607,0.000025110909,0.000045260327,0.000069274094,0.00004064266],"domain_scores_gemma":[0.9997806,0.000018017554,0.000033009463,0.00003081748,0.00008343835,0.000054103697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034049895,0.0005875987,0.00053289556,0.0009355993,0.000692613,0.00082333357,0.00034172367,0.00054290687,0.046738364],"category_scores_gemma":[0.00077510136,0.000106561805,0.00032852287,0.00088577025,0.00022917018,0.00043323194,0.00064992456,0.0006387256,0.04395392],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017163679,0.0003493011,0.017077547,0.0014770852,0.00026347904,0.007064874,0.0004971965,0.00015812955,0.028269142,0.008768085,0.25779885,0.6765599],"study_design_scores_gemma":[0.00014041002,0.00030402755,0.028232826,0.00032741326,0.000100566285,0.019941924,0.00018420395,0.00013364162,0.0037924235,0.0049073836,0.94190913,0.00002607455],"about_ca_topic_score_codex":0.0013923448,"about_ca_topic_score_gemma":0.0017890185,"teacher_disagreement_score":0.046738364,"about_ca_system_score_codex":0.00052219746,"about_ca_system_score_gemma":0.00060220255,"threshold_uncertainty_score":0.15635538},"labels":[],"label_agreement":null},{"id":"W2113087532","doi":"10.1074/mcp.m500166-mcp200","title":"Identification of Candidate Regulators of Embryonic Stem Cell Differentiation by Comparative Phosphoprotein Affinity Profiling","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ontario Genomics; Institute for Biological Sciences; Ottawa Hospital","funders":"","keywords":"Embryonic stem cell; Biology; Stem cell; Cellular differentiation; Cell biology; Homeobox protein NANOG; Population; Molecular biology; Genetics; Induced pluripotent stem cell; Gene","score_opus":0.008950975978341194,"score_gpt":0.23814017381405095,"score_spread":0.22918919783570976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113087532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9812185,0.002884752,0.010992347,0.0000929887,0.00002232542,0.00006014197,0.00285266,0.00015841401,0.001717791],"genre_scores_gemma":[0.9695898,0.0022981374,0.01756782,0.00015152208,0.000023365683,0.00013473775,0.00754709,0.00006535792,0.0026221413],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99984074,0.000014190495,0.00001211104,0.00005313867,0.000052576564,0.000027238488],"domain_scores_gemma":[0.9997948,0.000049017483,0.000057559693,0.000013249491,0.000045391258,0.000039988594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023720495,0.00046871864,0.00043097202,0.00092746713,0.000237962,0.00045341108,0.00024591823,0.00022659116,0.0010685256],"category_scores_gemma":[0.00028165223,0.00016740723,0.00029157984,0.0006736728,0.00021662128,0.0002515345,0.00019387086,0.0002982327,0.00053099927],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058453865,0.000008090304,0.0008131932,0.00003689942,0.0000058636015,0.00004632534,0.000013722401,0.00003747814,0.9977412,0.000064448555,0.0000335329,0.0011409267],"study_design_scores_gemma":[0.000014479724,0.00023237258,0.11822885,0.000011378279,0.00008701109,0.00070918084,0.000090541354,0.0023130965,0.8740408,0.00020825038,0.004049843,0.000014216597],"about_ca_topic_score_codex":0.0005179328,"about_ca_topic_score_gemma":0.0008065761,"teacher_disagreement_score":0.0010685256,"about_ca_system_score_codex":0.00028505665,"about_ca_system_score_gemma":0.00027230565,"threshold_uncertainty_score":0.0035746098},"labels":[],"label_agreement":null},{"id":"W2113784998","doi":"10.1074/mcp.m600356-mcp200","title":"Systematic Uncovering of Multiple Pathways Underlying the Pathology of Huntington Disease by an Acid-cleavable Isotope-coded Affinity Tag Approach","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Academia Sinica; National Science Council; Canadian Institute for Theoretical Astrophysics","keywords":"Huntingtin; Huntington's disease; Molecular biology; Huntingtin Protein; Striatum; Biology; Western blot; Chemistry; Biochemistry; Mutant; Disease; Gene; Neuroscience; Pathology; Medicine; Dopamine","score_opus":0.031900378585528105,"score_gpt":0.24246406035547372,"score_spread":0.2105636817699456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113784998","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95487094,0.0052055106,0.03477931,0.0003249616,0.0000671021,0.00017204942,0.001633476,0.00036439608,0.0025823566],"genre_scores_gemma":[0.9263747,0.006304993,0.05668013,0.00051017775,0.000025530167,0.00017156114,0.0035626607,0.0001285327,0.006241747],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998901,0.000007364662,0.000006263853,0.000036814745,0.000029897621,0.000029517309],"domain_scores_gemma":[0.9998729,0.000018649385,0.00003388287,0.000011574809,0.000033415483,0.000029572817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017529454,0.0005276411,0.000407001,0.0005070439,0.0002687146,0.00042756603,0.00027201322,0.00036635966,0.0008708303],"category_scores_gemma":[0.00015108788,0.00022560125,0.0004390562,0.00032437246,0.00022475705,0.0002708952,0.00028427606,0.0005619745,0.00045365017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055490298,0.000011161105,0.00028409553,0.000043173455,0.000009192431,0.000052603333,0.0000074178874,0.000022881344,0.9980343,0.000051378705,0.00003340264,0.0013949986],"study_design_scores_gemma":[0.000015321826,0.00023976123,0.017264191,0.000014128906,0.00009767137,0.00081692875,0.000050408944,0.0022361327,0.97487324,0.00016014064,0.0042176014,0.000014437226],"about_ca_topic_score_codex":0.0006572392,"about_ca_topic_score_gemma":0.0019115874,"teacher_disagreement_score":0.0008708303,"about_ca_system_score_codex":0.00038415674,"about_ca_system_score_gemma":0.00032024883,"threshold_uncertainty_score":0.002913177},"labels":[],"label_agreement":null},{"id":"W2114241266","doi":"10.1074/mcp.m112.020768","title":"Identification and Selected Reaction Monitoring (SRM) Quantification of Endocytosis Factors Associated with Numb","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Toronto Western Hospital; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"NUMB; Endocytosis; Endocytic cycle; Gene isoform; Signal transducing adaptor protein; Cell biology; Chemistry; Transmembrane protein; Biology; Phosphorylation; Biochemistry; Receptor; Gene","score_opus":0.015436586374247193,"score_gpt":0.22261412689661017,"score_spread":0.20717754052236298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114241266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84009176,0.0028863945,0.14951593,0.00029768556,0.00011607768,0.00021905288,0.0012809287,0.001893683,0.0036983902],"genre_scores_gemma":[0.7743903,0.002669816,0.21287796,0.00046999604,0.000095120165,0.00091991236,0.0011679351,0.00033324867,0.007075796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998733,0.00020069833,0.00006372401,0.00043238408,0.00048416317,0.00008598988],"domain_scores_gemma":[0.9993135,0.0001452235,0.00025614278,0.00006663295,0.00014475682,0.000073852105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081544794,0.000973101,0.00051844725,0.0014269127,0.00040602696,0.00050344714,0.00059321604,0.0009850416,0.0012809035],"category_scores_gemma":[0.0009670297,0.00039620863,0.00044571504,0.00073011674,0.00041388406,0.0004165165,0.0005303892,0.0008494925,0.00068844465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014372313,0.00004991036,0.0013273861,0.00007735623,0.000033266722,0.000096897806,0.000085780084,0.00018613173,0.99205726,0.00020332447,0.00013184827,0.005607216],"study_design_scores_gemma":[0.000013563055,0.00020717524,0.007869412,0.000015214651,0.000041070238,0.0004687048,0.00006021305,0.013272132,0.97622925,0.00017098406,0.0016288067,0.000023517765],"about_ca_topic_score_codex":0.00044325608,"about_ca_topic_score_gemma":0.00060731603,"teacher_disagreement_score":0.0014269127,"about_ca_system_score_codex":0.00051452266,"about_ca_system_score_gemma":0.0002714337,"threshold_uncertainty_score":0.004312575},"labels":[],"label_agreement":null},{"id":"W2115963159","doi":"10.1074/mcp.m111.013524","title":"Use of Proteinase K Nonspecific Digestion for Selective and Comprehensive Identification of Interpeptide Cross-links: Application to Prion Proteins","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Alberta; University of Victoria","funders":"","keywords":"Trypsin; Chemistry; Peptide; Biochemistry; Bottom-up proteomics; Mass spectrometry; Proteomics; Proteinase K; Cleavage (geology); Cross-reactivity; Cross reactions; Tandem mass spectrometry; Enzyme; Chromatography; Biology; Protein mass spectrometry; Antigen; Genetics","score_opus":0.016120481013418706,"score_gpt":0.27463936688050133,"score_spread":0.2585188858670826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115963159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95289695,0.0070068454,0.038298476,0.00018840727,0.000047306738,0.00013346017,0.0001697145,0.00014596884,0.0011129284],"genre_scores_gemma":[0.92026705,0.0064474507,0.07093642,0.00013549447,0.000012134549,0.000074238465,0.00038777746,0.000039489543,0.0016998422],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99962425,0.00006962333,0.000051934498,0.00013012091,0.00007765875,0.000046318586],"domain_scores_gemma":[0.9998449,0.000032331372,0.000043526372,0.000030798838,0.000028678529,0.000019742747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034340474,0.00066205574,0.00039052623,0.0002574339,0.0003228136,0.00043345793,0.0003184106,0.0006171427,0.00033482557],"category_scores_gemma":[0.00024777657,0.00023764344,0.0003029448,0.0002648111,0.00029801956,0.00032022287,0.00023481254,0.00044223637,0.00025084574],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014529576,0.000010116094,0.000108152155,0.000034494038,0.000003947581,0.00003628099,0.000008233634,0.000014711169,0.99871147,0.000010799853,0.000006347544,0.0010409559],"study_design_scores_gemma":[0.0000023953676,0.00008292384,0.0016457087,0.0000035979308,0.000014567341,0.00044205197,0.000012272582,0.00034975956,0.99668187,0.000016822274,0.0007427938,0.000005185395],"about_ca_topic_score_codex":0.0005497131,"about_ca_topic_score_gemma":0.0011018745,"teacher_disagreement_score":0.00066205574,"about_ca_system_score_codex":0.00021374975,"about_ca_system_score_gemma":0.00028385874,"threshold_uncertainty_score":0.0018161535},"labels":[],"label_agreement":null},{"id":"W2116065405","doi":"10.1074/mcp.m700267-mcp200","title":"Modulation of the Phagosome Proteome by Interferon-γ","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Caprion (Canada); Université de Montréal","funders":"Genome Canada","keywords":"Phagosome; Cell biology; Biology; Major histocompatibility complex; Immune system; Antigen presentation; Proteome; Antigen processing; MHC class II; Proteomics; Interferon; Phagocytosis; Cytokine; Acquired immune system; MHC class I; Phagolysosome; Microbiology; Immunology; T cell; Biochemistry","score_opus":0.004374979813676273,"score_gpt":0.2043625964090602,"score_spread":0.19998761659538394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116065405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98779684,0.0041101617,0.0054820105,0.00011077451,0.000056169494,0.00003420375,0.0014894041,0.000055008477,0.0008653467],"genre_scores_gemma":[0.98424757,0.0029157114,0.008384845,0.00026106002,0.000023277413,0.00007877321,0.0025622195,0.00003653804,0.00149015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998362,0.00002198645,0.000012801903,0.000052194046,0.000042910196,0.000033887085],"domain_scores_gemma":[0.99989843,0.00001800429,0.000035044406,0.000010011801,0.000024007604,0.00001452623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017708776,0.0003197037,0.00028743365,0.00037272688,0.0001801451,0.00034510955,0.00013773644,0.0002890564,0.00042754647],"category_scores_gemma":[0.00015730737,0.00011718935,0.00037181535,0.00027882415,0.00017401573,0.00022271238,0.0001840499,0.0003717184,0.00023096938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007636938,0.00000547906,0.0005971746,0.000036486384,0.000007362313,0.000021645646,0.0000081754315,0.000021694834,0.99856037,0.000015214676,0.000019122375,0.00063090393],"study_design_scores_gemma":[0.000011723299,0.00014634564,0.10202757,0.000031362284,0.000065500964,0.00039880243,0.00013686079,0.0020643566,0.8923216,0.000119578326,0.0026609772,0.000015392712],"about_ca_topic_score_codex":0.0005213184,"about_ca_topic_score_gemma":0.0006345925,"teacher_disagreement_score":0.0005213184,"about_ca_system_score_codex":0.0002610392,"about_ca_system_score_gemma":0.00020950762,"threshold_uncertainty_score":0.0018939972},"labels":[],"label_agreement":null},{"id":"W2116227658","doi":"10.1074/mcp.m800266-mcp200","title":"A PP2A Phosphatase High Density Interaction Network Identifies a Novel Striatin-interacting Phosphatase and Kinase Complex Linked to the Cerebral Cavernous Malformation 3 (CCM3) Protein","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Vascular Malformations Diagnosis and Treatment","field":"Medicine","cited_by":364,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"National Heart, Lung, and Blood Institute","keywords":"Protein phosphatase 2; Phosphatase; Protein subunit; Multiprotein complex; Cell biology; Protein–protein interaction; Biology; Interactome; Scaffold protein; Phosphorylation; Coiled coil; Biochemistry; Protein phosphatase 1; Autophagy-related protein 13; Protein kinase A; Proteomics; Chemistry; Protein phosphorylation; Gene; Signal transduction","score_opus":0.023390998961407217,"score_gpt":0.24143169388708538,"score_spread":0.21804069492567815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116227658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897804,0.0009224887,0.006897524,0.00019780065,0.000011116534,0.000024851612,0.00071713125,0.000121616235,0.001327056],"genre_scores_gemma":[0.98728323,0.0004132061,0.008753415,0.000114569986,0.000012556468,0.00003669232,0.0020233318,0.000017871887,0.0013451003],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991107,0.0000074919258,0.000005792404,0.000030338451,0.000028879856,0.000016419113],"domain_scores_gemma":[0.9999064,0.000013807847,0.000030230756,0.0000064296773,0.000011626908,0.000031327752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010197007,0.0002564941,0.00021365457,0.00067993556,0.0003182783,0.00028467478,0.00023882528,0.00024951927,0.001483442],"category_scores_gemma":[0.00015767288,0.00019084428,0.00028702096,0.0005939847,0.00017477083,0.00018976897,0.00036602578,0.00034118752,0.00036256708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029664318,0.000054579785,0.022492781,0.000116352065,0.00013552475,0.002026819,0.0000901664,0.0006201989,0.96635413,0.00071123475,0.0008999231,0.006201684],"study_design_scores_gemma":[0.000062848245,0.00025834262,0.71625763,0.000023394497,0.00028567656,0.0141776195,0.00030834347,0.05244664,0.20152652,0.0022114725,0.012387965,0.000053627915],"about_ca_topic_score_codex":0.0017180151,"about_ca_topic_score_gemma":0.0030120513,"teacher_disagreement_score":0.0017180151,"about_ca_system_score_codex":0.00043044056,"about_ca_system_score_gemma":0.00024835818,"threshold_uncertainty_score":0.004962623},"labels":[],"label_agreement":null},{"id":"W2116447934","doi":"10.1074/mcp.m600381-mcp200","title":"Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces cerevisiae","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":801,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Interactome; Saccharomyces cerevisiae; Computational biology; Atlas (anatomy); Computer science; Chemistry; Biology; Yeast; Biochemistry; Gene","score_opus":0.01534055959340624,"score_gpt":0.27023565797843124,"score_spread":0.254895098385025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116447934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5728588,0.003685974,0.38062885,0.0005279644,0.00005157358,0.0000968802,0.0346148,0.0036407458,0.0038943302],"genre_scores_gemma":[0.58759195,0.00227809,0.35102555,0.00012512706,0.000039465453,0.00020241366,0.05688805,0.00039626966,0.0014531524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954814,0.00009238226,0.000047006968,0.00013386022,0.00014082126,0.000037674206],"domain_scores_gemma":[0.99917656,0.00013983445,0.0001857542,0.0002595468,0.00015761101,0.000080685444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005371545,0.00044172935,0.00062971626,0.004685432,0.0007933786,0.001237282,0.0005248897,0.00032703293,0.0009870374],"category_scores_gemma":[0.0020191772,0.000310211,0.00044775568,0.004609762,0.0003211878,0.0010283598,0.0014823512,0.0008219238,0.0006050495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006804674,0.00020246785,0.08183772,0.0011866983,0.00049174594,0.0007214169,0.0008987122,0.054262962,0.57957953,0.024592316,0.011443611,0.24410237],"study_design_scores_gemma":[0.00006856063,0.00039429922,0.41996863,0.00020565023,0.0005094617,0.0032113257,0.0011053744,0.22996828,0.121563435,0.06553535,0.1572294,0.00024012447],"about_ca_topic_score_codex":0.0027347966,"about_ca_topic_score_gemma":0.004818182,"teacher_disagreement_score":0.004685432,"about_ca_system_score_codex":0.0005307121,"about_ca_system_score_gemma":0.0010259374,"threshold_uncertainty_score":0.0054377317},"labels":[],"label_agreement":null},{"id":"W2116471939","doi":"10.1074/mcp.m115.052449","title":"Novel N-terminal and Lysine Methyltransferases That Target Translation Elongation Factor 1A in Yeast and Human","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Methyltransferase; Lysine; Terminal (telecommunication); Yeast; Elongation factor; Chemistry; Translation (biology); Elongation; Biochemistry; Cell biology; Biology; Computer science; RNA; Methylation; DNA; Amino acid; Gene; Ribosome","score_opus":0.02547221931071258,"score_gpt":0.25243926087660823,"score_spread":0.22696704156589564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116471939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9555627,0.017005535,0.02184335,0.00017902844,0.00016360388,0.000061447965,0.0013622091,0.00034137088,0.0034807161],"genre_scores_gemma":[0.96127844,0.004711299,0.020926164,0.000116827614,0.000025621463,0.00006477394,0.0050192843,0.000035284018,0.007822255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999075,0.000008575541,0.000009769415,0.000035118126,0.00002557399,0.000013403245],"domain_scores_gemma":[0.99994385,0.000003952591,0.00001966705,0.000009076636,0.0000073907813,0.000016033235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013917946,0.00028925738,0.00018437924,0.00013715518,0.000114222865,0.00021041789,0.00018921953,0.00031675657,0.00081185973],"category_scores_gemma":[0.00013381855,0.00011339506,0.00029086325,0.00014659614,0.00012843343,0.00012742994,0.00027449365,0.00022881299,0.00063594116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015931342,0.0000143583775,0.0015403917,0.00010605925,0.000017724786,0.00024703413,0.000023583481,0.0001092742,0.98657787,0.000321683,0.00013363296,0.010749079],"study_design_scores_gemma":[0.000028699023,0.00033906184,0.016136931,0.000016416492,0.000063360276,0.0033281185,0.000039781964,0.000982194,0.9364214,0.00019832206,0.042430706,0.000015067409],"about_ca_topic_score_codex":0.0004840901,"about_ca_topic_score_gemma":0.00097193214,"teacher_disagreement_score":0.00081185973,"about_ca_system_score_codex":0.00028140206,"about_ca_system_score_gemma":0.00018552483,"threshold_uncertainty_score":0.0027158856},"labels":[],"label_agreement":null},{"id":"W2116540024","doi":"10.1074/mcp.m114.039560","title":"A Computational Framework for Heparan Sulfate Sequencing Using High-resolution Tandem Mass Spectra","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Proteoglycans and glycosaminoglycans research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"Tandem mass spectrometry; Chemistry; Heparan sulfate; Electron-transfer dissociation; Tandem; Mass spectrometry; Tandem repeat; Computational biology; Biochemistry; Biology; Chromatography; Genome; Cell; Gene","score_opus":0.018550697618044162,"score_gpt":0.2706906558604042,"score_spread":0.25213995824236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116540024","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.015582431,0.0005905,0.97537076,0.0006843029,0.00012286022,0.00020208066,0.000936158,0.004124768,0.002386076],"genre_scores_gemma":[0.16747704,0.0006593075,0.8238128,0.00051433814,0.00013746739,0.001006839,0.0032289024,0.00088882796,0.0022744515],"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931276,0.00026841005,0.000045583834,0.00014326672,0.00015923286,0.00007061564],"domain_scores_gemma":[0.99703026,0.0021742473,0.00011752748,0.00014644342,0.00035805354,0.00017334221],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020511544,0.0015353529,0.0014576578,0.0010767002,0.0012786972,0.0020655978,0.0036487596,0.002123835,0.0054899957],"category_scores_gemma":[0.0063921297,0.0010948548,0.002243185,0.0011632334,0.0009158545,0.0012780135,0.0019754092,0.0021822127,0.001017313],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014522942,0.0000958193,0.0012269156,0.00019882244,0.00015258935,0.00019921512,0.00006488159,0.9578113,0.0008427705,0.013035334,0.0030550777,0.023172023],"study_design_scores_gemma":[0.00001857068,0.0000080804975,0.000049947397,0.000006127488,0.000008512864,0.0000098250175,0.000009658232,0.99378717,0.00012327395,0.005307607,0.00066693017,0.0000043552413],"about_ca_topic_score_codex":0.017944852,"about_ca_topic_score_gemma":0.020101987,"teacher_disagreement_score":0.017944852,"about_ca_system_score_codex":0.0012966854,"about_ca_system_score_gemma":0.0038662679,"threshold_uncertainty_score":0.03568077},"labels":[],"label_agreement":null},{"id":"W2117331236","doi":"10.1074/mcp.m112.023507","title":"Laminin, gamma 2 (LAMC2): A Promising New Putative Pancreatic Cancer Biomarker Identified by Proteomic Analysis of Pancreatic Adenocarcinoma Tissues","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"National Cancer Institute","keywords":"Pancreatic cancer; Biomarker; Adenocarcinoma; Laminin; Biomarker discovery; Cancer research; Proteomics; Cancer; Biology; Medicine; Internal medicine; Cell biology; Biochemistry; Extracellular matrix; Gene","score_opus":0.020443433756267473,"score_gpt":0.29331188651620227,"score_spread":0.2728684527599348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117331236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994128,0.0032919343,0.001451089,0.0000794451,0.0000075358794,0.000021555445,0.0004973975,0.000051370513,0.000471595],"genre_scores_gemma":[0.9869118,0.0018775314,0.007980585,0.00008398222,0.000016890282,0.000029674087,0.0019426317,0.000009068401,0.0011477524],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998977,0.000018306995,0.000009864645,0.000021524327,0.00003657883,0.000015930927],"domain_scores_gemma":[0.9998807,0.000018207682,0.000034391353,0.000005370828,0.000034309254,0.000026974523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026417235,0.00045716818,0.00027619133,0.0012460853,0.00020699998,0.00047807596,0.00014765533,0.00023806274,0.00055650616],"category_scores_gemma":[0.00029662886,0.000101865306,0.00022497769,0.0008005588,0.00014053317,0.00019418944,0.00022246833,0.00017372593,0.00023002415],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004776138,0.000031213876,0.05635745,0.00020145345,0.00009118341,0.00049756066,0.00005529899,0.00020348825,0.92867714,0.00004283963,0.00022448163,0.01314027],"study_design_scores_gemma":[0.000045111847,0.0010493617,0.55209726,0.000045161698,0.00025919458,0.004441752,0.00029631637,0.0052456832,0.428843,0.00015967373,0.0074766055,0.000040974846],"about_ca_topic_score_codex":0.000999686,"about_ca_topic_score_gemma":0.0016156674,"teacher_disagreement_score":0.0012460853,"about_ca_system_score_codex":0.00023901137,"about_ca_system_score_gemma":0.00023495362,"threshold_uncertainty_score":0.0019877553},"labels":[],"label_agreement":null},{"id":"W2117555142","doi":"10.1074/mcp.m400110-mcp200","title":"Identifying Regulatory Subnetworks for a Set of Genes","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; McGill University; National Science Foundation","keywords":"Chromatin immunoprecipitation; Biology; Computational biology; Gene; DNA microarray; Chromatin; Saccharomyces cerevisiae; Gene regulatory network; Microarray analysis techniques; Genetics; Gene expression; Promoter","score_opus":0.011829873373490651,"score_gpt":0.2355942762105296,"score_spread":0.22376440283703897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117555142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88922876,0.0010704638,0.09222767,0.0005036112,0.00003824747,0.00010243395,0.0069816927,0.0009734933,0.008873674],"genre_scores_gemma":[0.95647836,0.0005549713,0.029957887,0.00007082689,0.00003303143,0.0001477941,0.010809307,0.00009201255,0.0018557247],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9997372,0.00003085096,0.000015402451,0.00012051565,0.000063176376,0.00003294036],"domain_scores_gemma":[0.9994357,0.000263011,0.0001262298,0.000051827687,0.0000735795,0.00004956339],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033658373,0.00043923853,0.00033889656,0.0026064832,0.0004924771,0.0006338989,0.00026434546,0.0001976492,0.0025622705],"category_scores_gemma":[0.0011927049,0.0001740602,0.0005570825,0.0016421457,0.00037587248,0.00067200814,0.0004920278,0.0002658635,0.00037947553],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015346159,0.00035137325,0.23499754,0.0014234227,0.0010312981,0.0013751651,0.000718385,0.044336367,0.4746463,0.035808258,0.004539337,0.19923785],"study_design_scores_gemma":[0.00013973123,0.00058235665,0.54838496,0.00019658072,0.0014313922,0.0021816802,0.00062005024,0.24144416,0.07580743,0.10252888,0.02656272,0.00012011308],"about_ca_topic_score_codex":0.0013904088,"about_ca_topic_score_gemma":0.0021520301,"teacher_disagreement_score":0.0026064832,"about_ca_system_score_codex":0.00060328835,"about_ca_system_score_gemma":0.00053363893,"threshold_uncertainty_score":0.008571684},"labels":[],"label_agreement":null},{"id":"W2118550160","doi":"10.1074/mcp.m110.002113","title":"Dynamics of the Skeletal Muscle Secretome during Myoblast Differentiation","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":305,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Novo Nordisk Fonden; H. Lundbeck A/S; Lundbeckfonden; Sundhed og Sygdom, Det Frie Forskningsråd; Danmarks Grundforskningsfond; National Research Foundation; Medical Research Council; Novo Nordisk","keywords":"Myogenesis; Skeletal muscle; Secretory protein; Stable isotope labeling by amino acids in cell culture; Cell biology; Secretion; C2C12; Biology; Paracrine signalling; Myocyte; Proteomics; Biochemistry; Endocrinology; Receptor; Gene","score_opus":0.002192538605560494,"score_gpt":0.18296736139091083,"score_spread":0.18077482278535034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118550160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938111,0.0014567181,0.0029754124,0.000044275563,0.000011338516,0.000015804986,0.0007015818,0.000050491853,0.0009332887],"genre_scores_gemma":[0.9877522,0.0016721302,0.00486585,0.00010457943,0.00001561008,0.000050381546,0.0015814172,0.00005219632,0.0039055697],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99988294,0.000008420752,0.000008386666,0.000028732102,0.000054042604,0.00001759963],"domain_scores_gemma":[0.9998385,0.00003069607,0.000039944833,0.000009651782,0.000037702117,0.000043524014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013548991,0.00014874655,0.00030898428,0.0004551805,0.00015848214,0.0004851424,0.00012510312,0.00023014501,0.00069605716],"category_scores_gemma":[0.00014128022,0.00014075015,0.00019527304,0.00034076217,0.00015864878,0.00024689318,0.00025654127,0.00043648726,0.00036450077],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007911626,0.0000034121306,0.00061399234,0.00001993927,0.0000029194355,0.000050524566,0.000036407586,0.000024137562,0.99819475,0.000031813066,0.000012929237,0.00093004876],"study_design_scores_gemma":[0.000019071711,0.00016045885,0.09416797,0.000020263238,0.00003327803,0.0004472737,0.0002071936,0.0023432078,0.8995984,0.00012251652,0.002862729,0.000017613487],"about_ca_topic_score_codex":0.00061583536,"about_ca_topic_score_gemma":0.0006988002,"teacher_disagreement_score":0.00069605716,"about_ca_system_score_codex":0.00027151965,"about_ca_system_score_gemma":0.00020156668,"threshold_uncertainty_score":0.0023285747},"labels":[],"label_agreement":null},{"id":"W2118791114","doi":"10.1074/mcp.m300018-mcp200","title":"Characterization of a Subfamily of Beetle Odorant-binding Proteins Found in Hemolymph","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Queen's University","funders":"","keywords":"Hemolymph; Odorant-binding protein; Biology; Biochemistry; Gene isoform; Drosophila melanogaster; Insect; Botany; Gene","score_opus":0.020664277814090436,"score_gpt":0.24636339219671521,"score_spread":0.22569911438262477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118791114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954595,0.0013473061,0.0014641001,0.00007891646,0.000011181383,0.000020642581,0.0007479767,0.000019869389,0.0008504576],"genre_scores_gemma":[0.96632594,0.003336222,0.010495682,0.00023360754,0.00007836777,0.00007225232,0.014498725,0.000042619075,0.0049165254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999367,0.0000054135967,0.0000057320763,0.000020347265,0.000020866726,0.000010895251],"domain_scores_gemma":[0.99976844,0.000031830903,0.000049743856,0.000023884348,0.00004815017,0.000078062105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011252473,0.0003241483,0.00024593066,0.00036289246,0.00025367778,0.00035149907,0.00019236041,0.0002525291,0.0007055128],"category_scores_gemma":[0.00032290778,0.00011178263,0.0002479718,0.00031011636,0.0001797318,0.0002566022,0.00015503498,0.00037550676,0.00071805646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012139793,0.000026507287,0.004070209,0.000046010053,0.000008176831,0.00026371822,0.00006412474,0.000035606477,0.9893728,0.000081982915,0.000065451,0.0058440194],"study_design_scores_gemma":[0.00006211375,0.00072414486,0.4940282,0.00006941923,0.00014251021,0.012543099,0.00043116062,0.0037424339,0.45386225,0.0005862193,0.033771086,0.000037359863],"about_ca_topic_score_codex":0.0005282784,"about_ca_topic_score_gemma":0.00048040503,"teacher_disagreement_score":0.0007055128,"about_ca_system_score_codex":0.00016351334,"about_ca_system_score_gemma":0.00021927181,"threshold_uncertainty_score":0.0023601651},"labels":[],"label_agreement":null},{"id":"W2118897204","doi":"10.1074/mcp.m900456-mcp200","title":"Synthetic Peptide Arrays for Pathway-Level Protein Monitoring by Liquid Chromatography-Tandem Mass Spectrometry","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kinexus Bioinformatics Corporation (Canada); University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Chemistry; Tandem mass spectrometry; Mass spectrometry; Computational biology; Shotgun; Proteomics; Multiplex; Phosphoproteomics; Chromatography; Peptide; Biology; Bioinformatics; Kinase; Protein phosphorylation; Protein kinase A; Biochemistry","score_opus":0.009809578420289681,"score_gpt":0.23305812055821945,"score_spread":0.22324854213792977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118897204","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19226652,0.0049174707,0.7942231,0.00046432705,0.00025237197,0.000588928,0.0017603566,0.0025633222,0.0029634787],"genre_scores_gemma":[0.25305367,0.002557463,0.7397345,0.00036930005,0.00009319672,0.0008295767,0.0015423276,0.000117653726,0.0017023894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992712,0.0002007546,0.00004744756,0.0001484946,0.00029896805,0.000033143202],"domain_scores_gemma":[0.9997414,0.000102935184,0.00004847692,0.00003119499,0.000048335103,0.000027571312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007552678,0.0006058109,0.00040507474,0.0003904486,0.00022930965,0.0005406152,0.0005583155,0.00044182767,0.0011501904],"category_scores_gemma":[0.00072022487,0.00027295706,0.00026457262,0.00037406158,0.00031914242,0.0004893918,0.0004269561,0.00069857715,0.0007657705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004289301,0.000021953661,0.00009140958,0.000045188408,0.000007558441,0.000018223514,0.0000049914097,0.00037741495,0.99192107,0.00029963587,0.00014333082,0.0070263776],"study_design_scores_gemma":[0.000021243915,0.00020459545,0.000591234,0.000006614185,0.000017544935,0.00016132099,0.0000078810335,0.009647737,0.9837151,0.0005387052,0.0050724107,0.000015524294],"about_ca_topic_score_codex":0.00012387653,"about_ca_topic_score_gemma":0.00033657413,"teacher_disagreement_score":0.0011501904,"about_ca_system_score_codex":0.0003330428,"about_ca_system_score_gemma":0.0003215668,"threshold_uncertainty_score":0.003994286},"labels":[],"label_agreement":null},{"id":"W2118938750","doi":"10.1074/mcp.o111.014902","title":"De Novo Sequencing and Homology Searching","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":187,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Computational biology; Homology (biology); Computer science; DNA sequencing; Sequence database; Proteomics; Sequence (biology); Genome; Sequence analysis; Biology; Genetics; Gene","score_opus":0.02146770040343689,"score_gpt":0.24308708292340592,"score_spread":0.22161938251996902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118938750","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0042514643,0.009839655,0.97040826,0.00047692648,0.0005373752,0.00027581153,0.00094559684,0.003916162,0.009348745],"genre_scores_gemma":[0.017378539,0.009212534,0.9594405,0.000459372,0.00016520353,0.00032575056,0.004106954,0.0011167495,0.007794361],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972691,0.0006259797,0.0002622937,0.00088689924,0.0008350826,0.00012074068],"domain_scores_gemma":[0.99812824,0.0008239305,0.00017601825,0.000403752,0.00038695463,0.00008122404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034014808,0.0017893593,0.0022119042,0.002412322,0.0011894975,0.0033679025,0.0027978574,0.0018220519,0.009476596],"category_scores_gemma":[0.0048015495,0.0011225636,0.0014228406,0.003408563,0.0009612902,0.0040024007,0.002552285,0.0025952589,0.012594664],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038765778,0.00022442393,0.00073940284,0.002775515,0.00024252919,0.0008054417,0.000596382,0.0077220597,0.105910785,0.09305318,0.030387163,0.7571555],"study_design_scores_gemma":[0.00010297897,0.00031720934,0.0012254302,0.00052463956,0.00015260404,0.004089936,0.00029653416,0.05996494,0.2031977,0.13921018,0.5906484,0.00026947292],"about_ca_topic_score_codex":0.0006820286,"about_ca_topic_score_gemma":0.00067328644,"teacher_disagreement_score":0.009476596,"about_ca_system_score_codex":0.00092278846,"about_ca_system_score_gemma":0.001030192,"threshold_uncertainty_score":0.0317024},"labels":[],"label_agreement":null},{"id":"W2119135386","doi":"10.1074/mcp.m112.021048","title":"Proteomic Characterization of Phagosomal Membrane Microdomains During Phagolysosome Biogenesis and Evolution","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Institute for Research in Immunology and Cancer; McGill University and Génome Québec Innovation Centre; Université Laval; Université de Montréal; Western University; Centre Hospitalier Universitaire Sainte-Justine","funders":"Canadian Institutes of Health Research","keywords":"Phagolysosome; Biogenesis; Characterization (materials science); Cell biology; Chemistry; Lipid microdomain; Membrane; Biology; Nanotechnology; Materials science; Phagosome; Intracellular; Biochemistry; Gene","score_opus":0.004494203822038473,"score_gpt":0.18539142144175255,"score_spread":0.18089721761971408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119135386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9819087,0.0043934803,0.008096069,0.00016806269,0.00004929893,0.00004006775,0.0032758622,0.00010603393,0.001962455],"genre_scores_gemma":[0.9797758,0.002263275,0.0099509,0.0002315861,0.00002458674,0.00007411649,0.0053545637,0.00008714895,0.0022379716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998006,0.000013776031,0.00001566239,0.00007009048,0.000063532214,0.0000363532],"domain_scores_gemma":[0.999724,0.000029677627,0.00007410593,0.000017449438,0.00010078222,0.000053950702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002906265,0.00024383841,0.00044090208,0.0009030957,0.00034927507,0.0006693441,0.00020652424,0.00047443056,0.00034951937],"category_scores_gemma":[0.0004954325,0.0001873126,0.00045097672,0.000749123,0.00019098191,0.00042585068,0.0005205004,0.00059235416,0.0004973595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011416462,0.000018302348,0.009318921,0.000106942156,0.000033832526,0.00024554803,0.00011357691,0.00010149104,0.986273,0.00014097746,0.00016162745,0.0033716008],"study_design_scores_gemma":[0.000015056845,0.0001875005,0.5014247,0.00007300933,0.0002219445,0.0023467625,0.0007190899,0.006750517,0.46940535,0.000626967,0.018161265,0.00006784604],"about_ca_topic_score_codex":0.0010738289,"about_ca_topic_score_gemma":0.0010574673,"teacher_disagreement_score":0.0010738289,"about_ca_system_score_codex":0.00025648918,"about_ca_system_score_gemma":0.00027843233,"threshold_uncertainty_score":0.0021351576},"labels":[],"label_agreement":null},{"id":"W2119560703","doi":"10.1074/mcp.m100027-mcp200","title":"Selective Detection of Membrane Proteins Without Antibodies","year":2002,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Genentech; Canadian Institute for Theoretical Astrophysics","keywords":"Chemistry; Mass spectrometry; Tandem mass spectrometry; Western blot; Chromatography; Ion trap; Peptide; Reagent; Antibody; Biochemistry; Biology","score_opus":0.009080484571182702,"score_gpt":0.22590870108848365,"score_spread":0.21682821651730094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119560703","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12165828,0.0055710142,0.8593631,0.0009612488,0.0006611867,0.0007146297,0.0009365409,0.003788295,0.006345758],"genre_scores_gemma":[0.19107205,0.00711219,0.77821416,0.001491732,0.0001969429,0.0024239167,0.003144233,0.0004887755,0.015855964],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99704534,0.00082728727,0.00019944031,0.0007809833,0.00091829506,0.00022862761],"domain_scores_gemma":[0.99861205,0.0004229649,0.0001769011,0.00030893408,0.00037090157,0.00010813386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020360453,0.0017362738,0.0008953788,0.0011781927,0.0005745698,0.0010150094,0.0015350517,0.0012786741,0.0023315006],"category_scores_gemma":[0.0015719517,0.000759731,0.0006918204,0.00077397993,0.0007417826,0.0011941213,0.00084124756,0.0022465214,0.0025251554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022811664,0.000018155486,0.000072289586,0.00007348654,0.0000095753385,0.000025645493,0.000014331333,0.0000133355,0.9967795,0.0003890891,0.00021331143,0.0023684641],"study_design_scores_gemma":[0.000014944982,0.00010831046,0.0010047812,0.000019051407,0.00001709543,0.00037822995,0.000014342408,0.0011379946,0.9883012,0.0002164845,0.008777197,0.000010367538],"about_ca_topic_score_codex":0.00038543623,"about_ca_topic_score_gemma":0.0008093783,"teacher_disagreement_score":0.0023315006,"about_ca_system_score_codex":0.0006866408,"about_ca_system_score_gemma":0.0008209868,"threshold_uncertainty_score":0.0107678175},"labels":[],"label_agreement":null},{"id":"W2120088072","doi":"10.1074/mcp.m110.003616","title":"The Protein Interaction Network of the Human Transcription Machinery Reveals a Role for the Conserved GTPase RPAP4/GPN1 and Microtubule Assembly in Nuclear Import and Biogenesis of RNA Polymerase II","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal; Montreal Clinical Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Cell biology; Biogenesis; RNA polymerase II; Microtubule; Nuclear transport; Transcription (linguistics); GTPase; Polymerase; Biology; Chemistry; Computational biology; Cell nucleus; Genetics; Gene; Gene expression; Cytoplasm","score_opus":0.006424840460117964,"score_gpt":0.23191521696508774,"score_spread":0.22549037650496978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120088072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952378,0.0009787055,0.002204616,0.00013829001,0.0000053044087,0.0000058796318,0.00023601922,0.000063143554,0.0011301739],"genre_scores_gemma":[0.99487454,0.00042177027,0.0023813185,0.000034095185,0.000009599753,0.000012436575,0.0008543328,0.000008530114,0.0014034293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994504,0.000008153388,0.0000022063573,0.000020699994,0.000015473119,0.000008335444],"domain_scores_gemma":[0.99995923,0.000009829658,0.0000119930955,0.0000044612034,0.000005730369,0.000008661946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054079068,0.00019791038,0.00012723725,0.00038281686,0.00020955836,0.00022014871,0.00016577348,0.00018772151,0.0010190372],"category_scores_gemma":[0.00015171095,0.00016240144,0.00012755979,0.0002574702,0.00014151508,0.00018140321,0.00013992812,0.00018726403,0.000369634],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019815132,0.000019878906,0.0046725348,0.00007470864,0.000029738445,0.00039447157,0.000038977767,0.0013253781,0.98552805,0.00058077124,0.00033695457,0.0068004113],"study_design_scores_gemma":[0.000051647305,0.00016531501,0.24059333,0.000023883871,0.00020385707,0.0032424375,0.0001479948,0.103465736,0.62813455,0.0034589411,0.020482156,0.00003019547],"about_ca_topic_score_codex":0.0010295209,"about_ca_topic_score_gemma":0.000949526,"teacher_disagreement_score":0.0010295209,"about_ca_system_score_codex":0.00043306247,"about_ca_system_score_gemma":0.00014933746,"threshold_uncertainty_score":0.0034089684},"labels":[],"label_agreement":null},{"id":"W2121036544","doi":"10.1074/mcp.m400053-mcp200","title":"Large-scale Identification of Tubulin-binding Proteins Provides Insight on Subcellular Trafficking, Metabolic Channeling, and Signaling in Plant Cells","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Calgary","funders":"","keywords":"Microtubule; Tubulin; Biology; Cytoskeleton; Cell biology; Proteomics; 14-3-3 protein; Biochemistry; Translation (biology); Microtubule-associated protein; Messenger RNA; Gene; Cell; Phosphorylation","score_opus":0.0059679881496929954,"score_gpt":0.2030896731681188,"score_spread":0.1971216850184258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121036544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9626501,0.016711334,0.015335108,0.0008529806,0.00009355806,0.00005325473,0.0018517239,0.00023499553,0.0022169896],"genre_scores_gemma":[0.9507668,0.012670543,0.027014963,0.00030595413,0.000101729,0.00003707672,0.004337799,0.000052528707,0.0047125425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994075,0.0000061183778,0.0000037773548,0.000014047429,0.000025126721,0.00001010433],"domain_scores_gemma":[0.9999262,0.00001112546,0.000021795333,0.000006232396,0.000015796702,0.000018762197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013894476,0.00038995667,0.00026427867,0.0006567436,0.00037119273,0.00040087962,0.00013952334,0.00032160484,0.00089960155],"category_scores_gemma":[0.00017098329,0.000121619334,0.00020701713,0.0004223941,0.00013512,0.00037153668,0.00015309251,0.00034966588,0.00053820026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042378768,0.000014177628,0.00062353763,0.00004468643,0.000007075465,0.00009352685,0.000008369485,0.0000369966,0.9943131,0.00007118412,0.00014392499,0.004600999],"study_design_scores_gemma":[0.000034570723,0.00027852142,0.105291024,0.000032517903,0.00010146366,0.0034384034,0.00015141098,0.0034372637,0.8670988,0.00096039457,0.019147204,0.000028393011],"about_ca_topic_score_codex":0.0006103026,"about_ca_topic_score_gemma":0.0016860387,"teacher_disagreement_score":0.00089960155,"about_ca_system_score_codex":0.0003381699,"about_ca_system_score_gemma":0.00023736943,"threshold_uncertainty_score":0.0030094981},"labels":[],"label_agreement":null},{"id":"W2122209438","doi":"10.1074/mcp.m112.017087","title":"Alpha Actinin is Specifically Recognized by Multiple Sclerosis Autoantibodies Isolated Using an N-Glucosylated Peptide Epitope","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Multiple Sclerosis Research Studies","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Alberta Innovates - Health Solutions; International Society of Travel Medicine","keywords":"Autoantibody; Epitope; Antigen; Biology; Molecular biology; Monoclonal antibody; Myelin basic protein; Antibody; Epitope mapping; Experimental autoimmune encephalomyelitis; Myelin; Multiple sclerosis; Immunology; Central nervous system; Endocrinology","score_opus":0.09074964006190167,"score_gpt":0.30339219284458385,"score_spread":0.21264255278268218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122209438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979942,0.000473658,0.0009050515,0.000034720764,0.000008926737,0.000008175722,0.000055157838,0.000023327677,0.0004968203],"genre_scores_gemma":[0.9964676,0.0003634104,0.0019153679,0.000087064414,0.000013733379,0.000011506699,0.00039089957,0.00000856073,0.00074177835],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986815,0.000019063533,0.000010852661,0.000040845138,0.00003287155,0.000028209295],"domain_scores_gemma":[0.9998951,0.000020367286,0.000036739795,0.000008001848,0.000015196414,0.000024713661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009758318,0.00043389676,0.0001678394,0.00030672053,0.00013701309,0.00018561489,0.00013654826,0.00033345548,0.0005730319],"category_scores_gemma":[0.00014130324,0.00011389355,0.0001721991,0.00018330924,0.0001385773,0.00008230339,0.00014485187,0.0002786445,0.00027313485],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025008792,0.0000066859093,0.00037844514,0.000010428179,0.0000024502297,0.000043776297,0.0000047359626,0.000006597104,0.9990534,0.000005906791,0.000009414365,0.00045315144],"study_design_scores_gemma":[0.000019301488,0.00059663213,0.059519507,0.000013206833,0.00003709109,0.0023630827,0.000051408777,0.00074705767,0.93426096,0.00007732888,0.0023082988,0.0000061708506],"about_ca_topic_score_codex":0.0002901213,"about_ca_topic_score_gemma":0.0005060107,"teacher_disagreement_score":0.0005730319,"about_ca_system_score_codex":0.00017502313,"about_ca_system_score_gemma":0.0001081674,"threshold_uncertainty_score":0.0019170046},"labels":[],"label_agreement":null},{"id":"W2122261574","doi":"10.1074/mcp.m700571-mcp200","title":"Proteomics of Photoreceptor Outer Segments Identifies a Subset of SNARE and Rab Proteins Implicated in Membrane Vesicle Trafficking and Fusion","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Eye Institute; National Institutes of Health","keywords":"Rab; Visual phototransduction; Cell biology; Biology; Bacterial outer membrane; Proteomics; Membrane protein; Transport protein; Biochemistry; Membrane; GTPase; Retinal","score_opus":0.007576530906325396,"score_gpt":0.2049114834993942,"score_spread":0.1973349525930688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122261574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99699175,0.0009181047,0.0013008884,0.000043109772,0.0000078762205,0.000012846575,0.00030977762,0.000025673937,0.0003898967],"genre_scores_gemma":[0.98807293,0.0016456152,0.006294733,0.00012529564,0.000012726555,0.000023212227,0.0019597819,0.000016829326,0.0018487412],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998927,0.0000081180315,0.00000875989,0.000028232756,0.00004393965,0.000018272332],"domain_scores_gemma":[0.99989724,0.000012647811,0.000034370412,0.000008727909,0.000021355712,0.000025753692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014474917,0.00042355174,0.0002505109,0.0006221439,0.00030194139,0.00033464466,0.000182144,0.00046385563,0.00048481417],"category_scores_gemma":[0.00019003352,0.00017817291,0.00034210473,0.00034995333,0.00021228191,0.00024426193,0.00020107145,0.00024653025,0.000310665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003324952,0.000006737106,0.0008949806,0.00002534868,0.000008442225,0.00009376253,0.000017576696,0.000016562544,0.9981238,0.000016186697,0.000020935819,0.000742452],"study_design_scores_gemma":[0.000016425067,0.00037574358,0.36994508,0.0000193168,0.0000968272,0.0030029886,0.00025411803,0.0018946433,0.61988866,0.00017872217,0.0043081557,0.00001931831],"about_ca_topic_score_codex":0.00093942723,"about_ca_topic_score_gemma":0.0012498486,"teacher_disagreement_score":0.00093942723,"about_ca_system_score_codex":0.00028195986,"about_ca_system_score_gemma":0.00019613719,"threshold_uncertainty_score":0.0020457506},"labels":[],"label_agreement":null},{"id":"W2124851083","doi":"10.1074/mcp.m112.017889","title":"Identification of Differentially Expressed Proteins in Direct Expressed Prostatic Secretions of Men with Organ-confined Versus Extracapsular Prostate Cancer","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Ontario Institute for Cancer Research; University of Toronto","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Prostate cancer; Prostate; Prostatectomy; Cancer; Prostatic acid phosphatase; Medicine; Prostate-specific antigen; Oncology; Internal medicine","score_opus":0.008500433717894015,"score_gpt":0.2429756514774171,"score_spread":0.23447521775952307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124851083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999204,0.00030162468,0.00016025078,0.000010926126,0.0000044222315,0.000005774656,0.0001833584,0.000006058232,0.0001236408],"genre_scores_gemma":[0.9987295,0.00014456094,0.00036422454,0.000024116018,0.000007125786,0.000008793181,0.00043941409,0.0000033725762,0.00027884898],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998,0.000027388061,0.000018532219,0.00007137728,0.000046580753,0.000036126636],"domain_scores_gemma":[0.99983084,0.00003889468,0.000044706663,0.000016490701,0.000024037894,0.00004492515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025371576,0.00028106797,0.00037216677,0.000644001,0.00032115873,0.0005286086,0.00017232638,0.00025551167,0.00090511265],"category_scores_gemma":[0.0006266912,0.00017899367,0.0002966017,0.0004906015,0.00025547537,0.00018033812,0.00053374626,0.00033866015,0.00017853072],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022149964,0.00013934061,0.7121631,0.00014275032,0.00028950878,0.0012005116,0.00064248213,0.00023247869,0.2707576,0.00007574814,0.00021840517,0.011923063],"study_design_scores_gemma":[0.000020629444,0.00035771675,0.9815533,0.00000890842,0.000079469035,0.001750951,0.00032015337,0.0005036207,0.014822777,0.000056036657,0.0005176362,0.000008726697],"about_ca_topic_score_codex":0.0005757054,"about_ca_topic_score_gemma":0.00077362667,"teacher_disagreement_score":0.00090511265,"about_ca_system_score_codex":0.00015081656,"about_ca_system_score_gemma":0.00014962538,"threshold_uncertainty_score":0.0030279756},"labels":[],"label_agreement":null},{"id":"W2124927273","doi":"10.1074/mcp.m113.030155","title":"Elucidating Novel Hepatitis C Virus–Host Interactions Using Combined Mass Spectrometry and Functional Genomics Approaches","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Hepatitis C virus research","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research","keywords":"Interactome; NS5A; Computational biology; Proteomics; Hepatitis C virus; Biology; Vesicular stomatitis virus; Protein–protein interaction; NS3; Quantitative proteomics; Virology; Virus; Hepacivirus; Gene; Genetics","score_opus":0.055832813484224766,"score_gpt":0.2631612805055354,"score_spread":0.20732846702131064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124927273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9699127,0.0032058025,0.023628978,0.00018970306,0.000014097138,0.00006698676,0.0014497794,0.00022745576,0.0013044587],"genre_scores_gemma":[0.93745524,0.002279457,0.054750867,0.0002706856,0.000029068073,0.000074856136,0.0041854633,0.000052911633,0.0009014532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983907,0.000023468669,0.000007902165,0.000053814972,0.000047998878,0.000027665565],"domain_scores_gemma":[0.999918,0.000024083429,0.000024109742,0.000006521122,0.00001444808,0.000012872565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039351688,0.0004917148,0.00047747363,0.001089905,0.00027491245,0.00044808234,0.00025748718,0.00038345132,0.000579094],"category_scores_gemma":[0.00021520842,0.00018501462,0.00053312496,0.00063369743,0.00018772706,0.0003296693,0.00030286828,0.00034154535,0.00025105343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012834507,0.000038891238,0.0042808363,0.00011238902,0.000057703583,0.00010054119,0.000028415445,0.0003399956,0.98703825,0.00016034905,0.000066318695,0.0076479837],"study_design_scores_gemma":[0.000057085417,0.000642102,0.30208954,0.00004565475,0.00048449083,0.0030965349,0.00026409476,0.053317674,0.6290702,0.002199037,0.008655499,0.000078029494],"about_ca_topic_score_codex":0.0008417355,"about_ca_topic_score_gemma":0.0016292988,"teacher_disagreement_score":0.001089905,"about_ca_system_score_codex":0.00033371276,"about_ca_system_score_gemma":0.00024665322,"threshold_uncertainty_score":0.0024212599},"labels":[],"label_agreement":null},{"id":"W2125044300","doi":"10.1074/mcp.m600319-mcp200","title":"A Proteomics Screen Implicates HSP83 and a Small Kinetoplastid Calpain-related Protein in Drug Resistance in Leishmania donovani Clinical Field Isolates by Modulating Drug-induced Programmed Cell Death","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Centre Hospitalier Universitaire de Québec; Canadian Institutes of Health Research; Centre National de la Recherche Scientifique; Université Laval","keywords":"Biology; Miltefosine; Leishmania donovani; Drug resistance; Leishmania; Amastigote; Paromomycin; Programmed cell death; Microbiology; Antifungal drug; Leishmaniasis; Apoptosis; Immunology; Visceral leishmaniasis; Parasite hosting; Genetics; Antibiotics","score_opus":0.014929399367018826,"score_gpt":0.2654069920631278,"score_spread":0.250477592696109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125044300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99856734,0.00039460137,0.000473184,0.000037377977,0.000005107578,0.000017151002,0.00024609567,0.000011121832,0.00024806132],"genre_scores_gemma":[0.99729115,0.0002728633,0.0011703757,0.00004796696,0.0000050754147,0.000011693871,0.0006690267,0.0000047901335,0.00052705995],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998938,0.000014323244,0.000011428615,0.000032216423,0.000026750362,0.000021480197],"domain_scores_gemma":[0.9998994,0.000020332189,0.00003086376,0.000007100615,0.0000240656,0.000018274111],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000088270586,0.00021292674,0.00022285257,0.00032330886,0.00014152251,0.00016538857,0.00012678829,0.00025939135,0.0006858387],"category_scores_gemma":[0.00018419104,0.00008785617,0.00018503335,0.00025957788,0.00013762839,0.00008756101,0.00011988414,0.00022043857,0.00018497811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008354494,0.000022799983,0.0025331876,0.000026697093,0.000009949409,0.0002483375,0.000022838436,0.000015770434,0.99591285,0.000008152768,0.000023337574,0.0010924622],"study_design_scores_gemma":[0.000029617833,0.0012240852,0.24458672,0.000010071811,0.00013203117,0.009425536,0.00030164918,0.0006729407,0.7414236,0.00005669477,0.0021262588,0.000010787642],"about_ca_topic_score_codex":0.00041140194,"about_ca_topic_score_gemma":0.0005644748,"teacher_disagreement_score":0.0006858387,"about_ca_system_score_codex":0.000110659705,"about_ca_system_score_gemma":0.00008593351,"threshold_uncertainty_score":0.0022943616},"labels":[],"label_agreement":null},{"id":"W2125206156","doi":"10.1074/mcp.m800196-mcp200","title":"Investigation of Protein-tyrosine Phosphatase 1B Function by Quantitative Proteomics","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Tyrosine Phosphatases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Proteomics; Protein tyrosine phosphatase; Function (biology); Chemistry; Quantitative proteomics; Tyrosine; Computational biology; Biochemistry; Biology; Cell biology","score_opus":0.01329178207532059,"score_gpt":0.21306116715090978,"score_spread":0.1997693850755892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125206156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8948783,0.005663949,0.09222344,0.00024844502,0.00009582475,0.00011858829,0.0037840249,0.00059765775,0.0023898047],"genre_scores_gemma":[0.91725653,0.004672585,0.07098805,0.00019868574,0.000051702606,0.0003139128,0.002713324,0.00017164768,0.0036335844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994392,0.000060405513,0.000029340581,0.0001929939,0.00020887627,0.00006919769],"domain_scores_gemma":[0.99971277,0.00009335308,0.00006977329,0.000030669446,0.00006747166,0.00002596223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006157646,0.00076493685,0.00041941856,0.0007765287,0.00027979477,0.00053936546,0.00042818417,0.00055747264,0.0009030883],"category_scores_gemma":[0.00041765464,0.00022972235,0.00033375062,0.0006876942,0.00031625747,0.00032964823,0.0002454088,0.0007133003,0.00050247053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034850356,0.000013934406,0.00018797784,0.0000505894,0.000007611018,0.000016921183,0.000011491527,0.000042662625,0.9983058,0.000053620854,0.00002294717,0.0012516088],"study_design_scores_gemma":[0.0000084822495,0.00014232984,0.009003226,0.000011410893,0.00003296723,0.0003050138,0.000041498985,0.0039165276,0.9847306,0.00016727012,0.0016286961,0.000012081616],"about_ca_topic_score_codex":0.00055709283,"about_ca_topic_score_gemma":0.00065563916,"teacher_disagreement_score":0.0009030883,"about_ca_system_score_codex":0.00039720986,"about_ca_system_score_gemma":0.00022701806,"threshold_uncertainty_score":0.0032564998},"labels":[],"label_agreement":null},{"id":"W2125281277","doi":"10.1074/mcp.m800007-mcp200","title":"Targets of Caspase-6 Activity in Human Neurons and Alzheimer Disease","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cell death mechanisms and regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; McGill University","funders":"National Institutes of Health; Eunice Kennedy Shriver National Institute of Child Health and Human Development; University of Washington; University of California, Los Angeles; Yale University","keywords":"Alzheimer's disease; Neuroscience; Disease; Caspase; Apoptosis; Computational biology; Medicine; Biology; Internal medicine; Programmed cell death; Biochemistry","score_opus":0.012872806023585185,"score_gpt":0.22684667065089728,"score_spread":0.2139738646273121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125281277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86955065,0.11660327,0.0045360825,0.0005069937,0.00015874648,0.00008291653,0.0018354497,0.00015610184,0.006569783],"genre_scores_gemma":[0.95545125,0.034605764,0.0043968107,0.00018357515,0.000054482447,0.000051693743,0.0016733295,0.000013547999,0.0035695774],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998394,0.000024796755,0.00002036355,0.000042052572,0.00005174469,0.00002154375],"domain_scores_gemma":[0.99990606,0.000010169407,0.000033065564,0.00000834094,0.00002952144,0.000012888651],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027901004,0.0002823144,0.0002474798,0.0006447349,0.00013630564,0.0003457791,0.00017060206,0.0002960559,0.0012841698],"category_scores_gemma":[0.0003261897,0.000086570115,0.00019528197,0.0004192171,0.00012168418,0.00022575683,0.00027300103,0.00023919193,0.00046194543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022287962,0.00016109641,0.01641142,0.0009077488,0.00016232366,0.0019015052,0.0002907763,0.00029311533,0.8909802,0.00075004465,0.0015202129,0.08439277],"study_design_scores_gemma":[0.0002399767,0.0017661769,0.25005564,0.00029483932,0.00030638737,0.02088167,0.00034600895,0.0015915608,0.66431516,0.0028335892,0.057317,0.000052001058],"about_ca_topic_score_codex":0.0004772348,"about_ca_topic_score_gemma":0.0005339559,"teacher_disagreement_score":0.0012841698,"about_ca_system_score_codex":0.0003173242,"about_ca_system_score_gemma":0.00015738374,"threshold_uncertainty_score":0.004296005},"labels":[],"label_agreement":null},{"id":"W2125376781","doi":"10.1074/mcp.m112.020701","title":"Quantitative Proteomic Analysis in Metastatic Renal Cell Carcinoma Reveals a Unique Set of Proteins with Potential Prognostic Significance","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"14-3-3 protein interactions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; St. Michael's Hospital; University of Toronto; York University","funders":"","keywords":"Renal cell carcinoma; Immunohistochemistry; Cancer research; Metastasis; Proteomics; Western blot; Kidney cancer; Clear cell renal cell carcinoma; Oncology; Biology; Cancer; Medicine; Pathology; Internal medicine; Gene","score_opus":0.011599336343162217,"score_gpt":0.24928647400110338,"score_spread":0.23768713765794117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125376781","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939943,0.0025627282,0.0022745202,0.000082097824,0.000014167623,0.00002225072,0.0005319777,0.000034880697,0.00048302606],"genre_scores_gemma":[0.9922316,0.0014511435,0.0045705824,0.00007363589,0.000012674715,0.000031483512,0.0010479168,0.000007902972,0.0005730821],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998394,0.000020147854,0.0000118009275,0.00003472782,0.00007061122,0.00002327563],"domain_scores_gemma":[0.99991,0.000015853011,0.000021527117,0.0000068925638,0.000026630169,0.00001908445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002851988,0.0002531991,0.00031433723,0.0007039232,0.00023755849,0.00027255632,0.00012584132,0.00022291421,0.0003262012],"category_scores_gemma":[0.0003180999,0.00009534897,0.00026071735,0.00066455494,0.00014287788,0.000140299,0.00018712375,0.00022298351,0.00018329614],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020307164,0.00002860784,0.008333598,0.000096733296,0.000039188104,0.000216469,0.00003510776,0.00010806199,0.98498803,0.000059715643,0.000092229464,0.005799268],"study_design_scores_gemma":[0.00003144947,0.00048128745,0.5411801,0.000024160609,0.00018405165,0.004282197,0.00018460352,0.006224086,0.44286263,0.00044546064,0.004070828,0.000029200484],"about_ca_topic_score_codex":0.0006568804,"about_ca_topic_score_gemma":0.000779885,"teacher_disagreement_score":0.0007039232,"about_ca_system_score_codex":0.00025036762,"about_ca_system_score_gemma":0.00021683579,"threshold_uncertainty_score":0.0018165708},"labels":[],"label_agreement":null},{"id":"W2125776711","doi":"10.1074/mcp.m800571-mcp200","title":"Functional and Complementary Phosphorylation State Attributes of Human Insulin-like Growth Factor-Binding Protein-1 (IGFBP-1) Isoforms Resolved by Free Flow Electrophoresis","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Growth Hormone and Insulin-like Growth Factors","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Children’s Health Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phosphorylation; Phosphopeptide; Chemistry; Growth factor; Insulin-like growth factor-binding protein; Gene isoform; Insulin-like growth factor; Biochemistry; Receptor","score_opus":0.012531151384573502,"score_gpt":0.216202777389423,"score_spread":0.2036716260048495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125776711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9835265,0.0015911163,0.01132129,0.00014666663,0.00006765914,0.000022344238,0.0005355141,0.00006602504,0.0027229346],"genre_scores_gemma":[0.9784219,0.0010733677,0.014350837,0.00017943267,0.000027237917,0.000044116485,0.0011105263,0.000037861497,0.004754554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985313,0.000021217604,0.000011936827,0.000042609117,0.000042069754,0.000028998453],"domain_scores_gemma":[0.9998018,0.00005877469,0.000040017032,0.000015694855,0.000043569096,0.00004006194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002689532,0.0003009823,0.00009204311,0.00043248467,0.00014803016,0.0003449132,0.00016560429,0.0002420193,0.001820385],"category_scores_gemma":[0.0004257541,0.0001495187,0.00019007792,0.00015718261,0.00017448809,0.00029182876,0.00013368043,0.00047356082,0.0003401549],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000900684,0.000014406311,0.00038437225,0.000019844756,0.00000353407,0.000015146891,0.00002394255,0.00001854304,0.9975942,0.00009896125,0.000029228493,0.0017077387],"study_design_scores_gemma":[0.000017228953,0.00023072667,0.0480523,0.000014481427,0.000033836328,0.00053308654,0.00007989472,0.0020674032,0.9465846,0.00027703948,0.0020873034,0.000022003404],"about_ca_topic_score_codex":0.0006508134,"about_ca_topic_score_gemma":0.0006221042,"teacher_disagreement_score":0.001820385,"about_ca_system_score_codex":0.00020958793,"about_ca_system_score_gemma":0.00010262952,"threshold_uncertainty_score":0.0060898066},"labels":[],"label_agreement":null},{"id":"W2125819588","doi":"10.1074/mcp.m112.019919","title":"Temporal Profiling of Lapatinib-suppressed Phosphorylation Signals in EGFR/HER2 Pathways","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"HER2/EGFR in Cancer Research","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Lapatinib; Phosphorylation; Profiling (computer programming); Chemistry; Computational biology; Cancer research; Pharmacology; Biology; Medicine; Computer science; Internal medicine; Biochemistry; Trastuzumab; Breast cancer; Cancer","score_opus":0.03578254199293283,"score_gpt":0.30133680016272824,"score_spread":0.2655542581697954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125819588","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99106723,0.0022258884,0.0029479568,0.0000600618,0.000016636463,0.00002786899,0.0022887152,0.000087678156,0.00127798],"genre_scores_gemma":[0.98995006,0.0021236686,0.003427424,0.000064849286,0.000011258086,0.00008993966,0.0027890468,0.000030207202,0.0015135987],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999354,0.0000039985966,0.000003372066,0.000017978116,0.00002187631,0.000017347456],"domain_scores_gemma":[0.99995255,0.00000564241,0.00001579278,0.0000027114957,0.000011367543,0.00001208612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007725712,0.00020025084,0.00024884762,0.0003254231,0.00012672483,0.00027325962,0.0001254779,0.00014683354,0.0009578587],"category_scores_gemma":[0.00007976979,0.00010290391,0.00020448252,0.00034889864,0.00009741387,0.00020425962,0.00016439019,0.00034992915,0.00019940412],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032121586,0.000031202042,0.0014637213,0.0000900517,0.00001863088,0.00005640506,0.000018496723,0.00022739654,0.9949809,0.000058838712,0.00011175885,0.0026214186],"study_design_scores_gemma":[0.000036583886,0.00041771407,0.13143986,0.000017316524,0.000066155786,0.0004146609,0.00012114279,0.010342324,0.8537975,0.00022425549,0.003097231,0.000025255245],"about_ca_topic_score_codex":0.0005202028,"about_ca_topic_score_gemma":0.0008974172,"teacher_disagreement_score":0.0009578587,"about_ca_system_score_codex":0.00020227654,"about_ca_system_score_gemma":0.00012188544,"threshold_uncertainty_score":0.0032043457},"labels":[],"label_agreement":null},{"id":"W2126066807","doi":"10.1074/mcp.m110.003533","title":"Broad Coverage Identification of Multiple Proteolytic Cleavage Site Sequences in Complex High Molecular Weight Proteins Using Quantitative Proteomics as a Complement to Edman Sequencing","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia; Michael Smith Health Research BC; Centre for Blood Research, University of British Columbia; Canadian Breast Cancer Research Alliance; Canadian Institutes of Health Research; Cancer Research Society","keywords":"Edman degradation; Cleavage (geology); Chemistry; Tandem mass spectrometry; Tandem mass tag; Biochemistry; Proteomics; Mass spectrometry; Peptide sequence; Quantitative proteomics; Biology; Chromatography; Gene","score_opus":0.025161482564815655,"score_gpt":0.2923349657592023,"score_spread":0.26717348319438666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126066807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.563996,0.0038983005,0.42441007,0.00036540677,0.000094364834,0.00027662117,0.0019167686,0.001245177,0.0037972385],"genre_scores_gemma":[0.51724344,0.0035037694,0.4702964,0.00045966814,0.00006508755,0.0002694739,0.0030292103,0.00022461171,0.004908208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999424,0.00010154897,0.000036530968,0.00014329389,0.00024371856,0.000050877996],"domain_scores_gemma":[0.99952435,0.00014631661,0.00012479667,0.00006532137,0.00010023544,0.000039101633],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007605079,0.00069137383,0.00037892174,0.00078556006,0.00024445995,0.00061117107,0.00043041346,0.00045145478,0.0007204229],"category_scores_gemma":[0.00059149467,0.00024759967,0.00033419096,0.00040464348,0.00039578998,0.0004493891,0.00040274928,0.00074227795,0.00058704196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022830784,0.0000105093795,0.00019345761,0.00003203522,0.000007649872,0.000022535916,0.000010806398,0.000050232065,0.99590874,0.0001247103,0.000028906046,0.0035876583],"study_design_scores_gemma":[0.000006221879,0.00013380195,0.0036993476,0.000010752176,0.000021366153,0.00038519863,0.000028372307,0.0030535734,0.98903954,0.000261962,0.0033482853,0.000011502566],"about_ca_topic_score_codex":0.0003879111,"about_ca_topic_score_gemma":0.0011728018,"teacher_disagreement_score":0.00078556006,"about_ca_system_score_codex":0.00033326258,"about_ca_system_score_gemma":0.0004053513,"threshold_uncertainty_score":0.004022002},"labels":[],"label_agreement":null},{"id":"W2127524719","doi":"10.1074/mcp.m400157-mcp200","title":"Proteome Changes in Ovarian Epithelial Cells Derived from Women with BRCA1 Mutations and Family Histories of Cancer","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of California, San Francisco; National Institutes of Health; National Center for Research Resources; San Francisco State University","keywords":"Proteome; Epithelial ovarian cancer; Ovarian cancer; Biology; Proteomics; Genetics; Cancer research; Cancer; Gene","score_opus":0.006515825230756927,"score_gpt":0.21903245637975005,"score_spread":0.21251663114899313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127524719","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99842703,0.00044059823,0.00015352701,0.00003098408,0.000008513848,0.000007919593,0.0005910169,0.00000764226,0.00033264584],"genre_scores_gemma":[0.99460804,0.0008797023,0.00053215923,0.000060051007,0.000013605734,0.000021474689,0.0027919565,0.0000065486606,0.0010864479],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999449,0.0000068587856,0.0000042672623,0.0000151430495,0.00001539126,0.000013344718],"domain_scores_gemma":[0.99992204,0.000016173588,0.00002458133,0.00000783996,0.000014197997,0.000015203913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006927149,0.00014781817,0.00014096641,0.0005098153,0.00018564,0.00018777898,0.00006596849,0.00013444848,0.00083524984],"category_scores_gemma":[0.00023162634,0.000083801795,0.00013190707,0.00036957924,0.00009633086,0.00007769501,0.00015982382,0.00015697547,0.00021301323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000704598,0.00005911472,0.060473885,0.00008465024,0.0000564393,0.0015741774,0.00034106727,0.00004507159,0.9299982,0.000045546858,0.00024677688,0.0063705384],"study_design_scores_gemma":[0.000017299137,0.00033985986,0.9188176,0.000011077615,0.00005848842,0.005400782,0.00047976788,0.0002899746,0.070598096,0.00007073563,0.0039074235,0.000008831897],"about_ca_topic_score_codex":0.0006995828,"about_ca_topic_score_gemma":0.00052099675,"teacher_disagreement_score":0.00083524984,"about_ca_system_score_codex":0.00008832625,"about_ca_system_score_gemma":0.00007531885,"threshold_uncertainty_score":0.0027941465},"labels":[],"label_agreement":null},{"id":"W2127671367","doi":"10.1074/mcp.m111.011338","title":"Proteomic Analysis of Brassica Stigmatic Proteins Following the Self-incompatibility Reaction Reveals a Role for Microtubule Dynamics During Pollen Responses","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Plant Reproductive Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University; University of Toronto; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Pollen; Proteome; Brassica; Genetics; Proteomics; F-box protein; Cell biology; Pollen tube; Arabidopsis; Gametophyte; Gynoecium; Ubiquitin ligase; Stamen; Gene; Botany; Mutant; Pollination; Ubiquitin","score_opus":0.009976972991214488,"score_gpt":0.22684377686755247,"score_spread":0.21686680387633797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127671367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996473,0.0014804977,0.0006243197,0.00006245492,0.000011701384,0.00001080242,0.0006112361,0.000023655171,0.00070233055],"genre_scores_gemma":[0.9923684,0.0013852952,0.0014013379,0.000080585305,0.000013470521,0.00003074169,0.0018897587,0.000010299407,0.0028200871],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999629,0.0000023958796,0.0000024768556,0.00001284081,0.000010706115,0.000008610099],"domain_scores_gemma":[0.99994874,0.0000058075902,0.000014443468,0.000003816426,0.000011611996,0.000015610307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006032228,0.00024960065,0.00017937928,0.00031398592,0.00020969826,0.000220377,0.00011328979,0.00022464222,0.0008710079],"category_scores_gemma":[0.00009121001,0.000095686075,0.00022689275,0.00021585247,0.00010760876,0.00018397304,0.00010852529,0.0002562025,0.00032380302],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007551961,0.00000821975,0.0012035772,0.000029748719,0.000008056223,0.00009234696,0.000025549307,0.000014215503,0.99757427,0.00002245804,0.000032650645,0.00091337133],"study_design_scores_gemma":[0.000023118042,0.00033221458,0.5770906,0.000021723234,0.00006976578,0.0018653803,0.0003122612,0.0012972995,0.41427013,0.0001716879,0.004524735,0.000021008223],"about_ca_topic_score_codex":0.0007878997,"about_ca_topic_score_gemma":0.0013958545,"teacher_disagreement_score":0.0008710079,"about_ca_system_score_codex":0.0001868955,"about_ca_system_score_gemma":0.00012123376,"threshold_uncertainty_score":0.002913773},"labels":[],"label_agreement":null},{"id":"W2127827537","doi":"10.1074/mcp.m113.035139","title":"Time-resolved Analysis of the Matrix Metalloproteinase 10 Substrate Degradome","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Eye Institute; Eidgenössische Technische Hochschule Zürich; European Commission; National Heart, Lung, and Blood Institute; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Michael Smith Health Research BC; FP7 People: Marie-Curie Actions; National Institutes of Health; National Science Foundation","keywords":"Protease; Chemistry; Cleavage (geology); Proteolysis; Metalloproteinase; Biophysics; Cell biology; Matrix metalloproteinase; Biochemistry; Biology; Enzyme","score_opus":0.00474453653259351,"score_gpt":0.2011714982306345,"score_spread":0.19642696169804097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127827537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8756566,0.0042293635,0.11340672,0.00015552726,0.00009470325,0.000101154306,0.0031495926,0.00036581326,0.0028405897],"genre_scores_gemma":[0.8472317,0.007710112,0.13277526,0.00022164648,0.00007722595,0.00027490986,0.004233595,0.00012717408,0.0073483023],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998534,0.00001651295,0.0000075296275,0.00004351429,0.000058597496,0.00002040133],"domain_scores_gemma":[0.99979454,0.00006713339,0.000043740474,0.000022940443,0.000045428318,0.000026212005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003381701,0.00038511908,0.00023255176,0.00066426524,0.00021914537,0.0003941771,0.00028220084,0.00032980135,0.0010297352],"category_scores_gemma":[0.0002768705,0.00012953162,0.00020433246,0.0005213045,0.00016448082,0.00031119504,0.00022614654,0.0004947687,0.00046328668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044104225,0.000010064291,0.00041788333,0.000036787147,0.000008332617,0.000051357085,0.000015137999,0.000037342914,0.9966511,0.000086588385,0.00004845056,0.0025929047],"study_design_scores_gemma":[0.0000060812454,0.00013391735,0.014291113,0.0000068374516,0.000025698624,0.0006659016,0.000047578516,0.0032928907,0.97837675,0.00022203695,0.002918526,0.000012794451],"about_ca_topic_score_codex":0.0005346131,"about_ca_topic_score_gemma":0.0009462986,"teacher_disagreement_score":0.0010297352,"about_ca_system_score_codex":0.00025091105,"about_ca_system_score_gemma":0.00019464066,"threshold_uncertainty_score":0.0034447908},"labels":[],"label_agreement":null},{"id":"W2128112010","doi":"10.1074/mcp.m600468-mcp200","title":"Proteomics Analysis of Interleukin (IL)-7-induced Signaling Effectors Shows Selective Changes in IL-7Rα449F Knock-in T Cell Progenitors","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Michael Smith Health Research BC; Canadian Institutes of Health Research; Cancer Research Society","keywords":"Cell biology; Progenitor cell; Interleukin 15; Effector; Proteomics; Biology; Interleukin 4; Gene knockin; Interleukin; Signal transduction; Cytokine; Stem cell; Immunology; Genetics; Gene","score_opus":0.008140538360738464,"score_gpt":0.2255197949703029,"score_spread":0.21737925660956442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128112010","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922172,0.00067310303,0.004690678,0.00007462269,0.000043631553,0.000026768674,0.0011711147,0.00012497138,0.0009779484],"genre_scores_gemma":[0.9794112,0.0016180986,0.008359127,0.00021478692,0.000024542152,0.0001114591,0.0035744742,0.00016106998,0.0065251957],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983895,0.000010114195,0.000013415165,0.000051072904,0.000048790327,0.000037590482],"domain_scores_gemma":[0.99985874,0.000016496666,0.000046485147,0.000008811918,0.000019829104,0.000049669605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010909013,0.00042125213,0.0002887991,0.00030354646,0.00014057726,0.00032086892,0.00017915314,0.00029885632,0.0012623655],"category_scores_gemma":[0.00008890119,0.00015773979,0.0003439275,0.00021387613,0.000194888,0.00020910388,0.00021381355,0.00060905266,0.0006638767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036164845,0.000005235522,0.00008088418,0.0000075364633,0.0000021699154,0.00003556283,0.0000060100533,0.000007838468,0.99964416,0.000014057882,0.0000070792516,0.00015328465],"study_design_scores_gemma":[0.000010459653,0.00014074876,0.011165942,0.000006368979,0.000021829832,0.00054223306,0.00005888818,0.00052655267,0.98629135,0.000049797673,0.0011805862,0.0000052202267],"about_ca_topic_score_codex":0.0002202478,"about_ca_topic_score_gemma":0.00026573375,"teacher_disagreement_score":0.0012623655,"about_ca_system_score_codex":0.00017730927,"about_ca_system_score_gemma":0.0000901615,"threshold_uncertainty_score":0.0042230487},"labels":[],"label_agreement":null},{"id":"W2128151927","doi":"10.1074/mcp.m113.031005","title":"Regulation of Stress-Inducible Phosphoprotein 1 Nuclear Retention by Protein Inhibitor of Activated STAT PIAS1","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Dalhousie University; Institute for Research in Immunology and Cancer; Western University","funders":"Foreign Affairs and International Trade Canada; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Canadian Institutes of Health Research; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo; Beatrice Hunter Cancer Research Institute; Cancer Research Institute","keywords":"SUMO protein; Chemistry; Mutant; HEK 293 cells; Cell biology; Biology; Biochemistry; Ubiquitin","score_opus":0.007454573480220632,"score_gpt":0.21777370452261638,"score_spread":0.21031913104239575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128151927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98894966,0.0036337557,0.0046473583,0.000120238976,0.00003698043,0.000031697407,0.00080907106,0.0002640903,0.0015070888],"genre_scores_gemma":[0.992588,0.0014874461,0.0023521867,0.000049452145,0.000006404189,0.00005052985,0.0011876984,0.00002501559,0.0022534248],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999194,0.000011281632,0.0000076955475,0.000020175925,0.00002044902,0.00002083956],"domain_scores_gemma":[0.99993575,0.000007657999,0.00003031635,0.0000050787353,0.000007361585,0.000013858701],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007228239,0.00030082336,0.0002030096,0.00018076436,0.00012744332,0.00026265494,0.0001758252,0.00011490302,0.0010648943],"category_scores_gemma":[0.00008176573,0.00012332118,0.00022331542,0.0001855524,0.00015177071,0.00011891105,0.00014715311,0.0003542428,0.0003264697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011916497,0.000020023299,0.00023785321,0.0000454752,0.00000590285,0.000021901315,0.0000086949,0.00008311783,0.997672,0.0001046958,0.00008278589,0.0015982817],"study_design_scores_gemma":[0.000021539126,0.00015072836,0.008467054,0.0000058373043,0.000015655798,0.00013974623,0.000020177582,0.0030418206,0.98482937,0.000054411605,0.003249927,0.0000038736407],"about_ca_topic_score_codex":0.0003213002,"about_ca_topic_score_gemma":0.00072438485,"teacher_disagreement_score":0.0010648943,"about_ca_system_score_codex":0.00035536813,"about_ca_system_score_gemma":0.00016756468,"threshold_uncertainty_score":0.0035624504},"labels":[],"label_agreement":null},{"id":"W2128157716","doi":"10.1074/mcp.m400062-mcp200","title":"Purification and Identification of Protein-Tyrosine Kinase-binding Proteins Using Synthetic Phosphopeptides as Affinity Reagents","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Cancer Institute","keywords":"Autophosphorylation; Receptor tyrosine kinase; Signal transduction; Cell biology; Biology; Biochemistry; Phosphorylation; Protein tyrosine phosphatase; Protein phosphorylation; Cell signaling; Protein kinase A","score_opus":0.02169829663908231,"score_gpt":0.27986743577246087,"score_spread":0.2581691391333786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128157716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7902902,0.017341556,0.17780764,0.0010385636,0.0003806712,0.0014475827,0.004794309,0.00080993096,0.00608956],"genre_scores_gemma":[0.6849628,0.016519016,0.25510052,0.0011787734,0.0002199102,0.0015231158,0.026306449,0.00033001098,0.013859419],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994923,0.00007645443,0.000049205657,0.00010057205,0.00015614562,0.00012530008],"domain_scores_gemma":[0.9997571,0.000051920895,0.000041244693,0.000024253583,0.00006937838,0.000056116478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047347078,0.0012345198,0.0008090833,0.00074411056,0.00042090873,0.00041921687,0.00069947017,0.0005152689,0.0013754758],"category_scores_gemma":[0.00030571042,0.00041128608,0.0006867422,0.0009475531,0.0002980633,0.0003861777,0.0005045932,0.0010850695,0.0021699683],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004474997,0.00004288801,0.00014359853,0.00010552446,0.000010988866,0.000079171085,0.000016786873,0.00008031308,0.9973864,0.00011510013,0.000117613534,0.0018570233],"study_design_scores_gemma":[0.00006347248,0.00034456456,0.0053606974,0.000039469705,0.00005491974,0.0009957668,0.00006462912,0.002850733,0.97209126,0.00043305752,0.017673565,0.000027781929],"about_ca_topic_score_codex":0.00063190225,"about_ca_topic_score_gemma":0.0010804377,"teacher_disagreement_score":0.0013754758,"about_ca_system_score_codex":0.00037781347,"about_ca_system_score_gemma":0.00044125924,"threshold_uncertainty_score":0.004601419},"labels":[],"label_agreement":null},{"id":"W2128858630","doi":"10.1074/mcp.m112.026161","title":"Global Impact of Salmonella Pathogenicity Island 2-secreted Effectors on the Host Phosphoproteome","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Effector; Biology; Pathogenicity island; Cell biology; Actin cytoskeleton; Salmonella; Virulence; Secretion; Type three secretion system; Kinase; Phosphorylation; Cytoskeleton; Genetics; Cell; Bacteria; Gene; Biochemistry","score_opus":0.009000082768306156,"score_gpt":0.2100770636739135,"score_spread":0.20107698090560733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128858630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99703836,0.000662191,0.0008561261,0.000033258086,0.0000069186185,0.0000095306905,0.0007074109,0.00003339086,0.00065291714],"genre_scores_gemma":[0.9962011,0.00053208164,0.00097161566,0.000047040954,0.0000044132994,0.000025202224,0.0012024433,0.00002077686,0.0009953249],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990976,0.000009897019,0.0000055305704,0.000026797668,0.000024113866,0.000024017976],"domain_scores_gemma":[0.999926,0.000009918316,0.000021809965,0.000007324657,0.000011445912,0.000023501123],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010514354,0.00031737683,0.00025081204,0.00019186932,0.000114843104,0.00028771494,0.00009150796,0.00017633778,0.0009756544],"category_scores_gemma":[0.00007062566,0.00011740757,0.00022764031,0.00014053613,0.00016259542,0.00017455016,0.00025412077,0.00033199537,0.00021235236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000139105,0.000008642635,0.00040834633,0.000019825968,0.0000048056095,0.000016654509,0.0000060570537,0.000052326508,0.9989868,0.000014871398,0.000010503786,0.00033217593],"study_design_scores_gemma":[0.000007881534,0.0002149737,0.036891308,0.000003681028,0.000019343372,0.00013894988,0.000041847357,0.000931974,0.96116996,0.000038248956,0.0005359507,0.0000057234597],"about_ca_topic_score_codex":0.00030359044,"about_ca_topic_score_gemma":0.00047305122,"teacher_disagreement_score":0.0009756544,"about_ca_system_score_codex":0.00018208583,"about_ca_system_score_gemma":0.00013289206,"threshold_uncertainty_score":0.0032639503},"labels":[],"label_agreement":null},{"id":"W2129840287","doi":"10.1074/mcp.m110.003376","title":"Identification of Nuclear Phosphatidylinositol 4,5-Bisphosphate-Interacting Proteins by Neomycin Extraction","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Illinois at Urbana-Champaign; Norges Forskningsråd; Universitetet i Oslo; Queen's University; Universitetet i Bergen; University of Dundee","keywords":"Biology; Pleckstrin homology domain; Effector; Cell biology; PHD finger; Computational biology; Biochemistry; Signal transduction; Transcription factor; Gene; Zinc finger","score_opus":0.003077291205639855,"score_gpt":0.21451235847450734,"score_spread":0.2114350672688675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129840287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89300114,0.0059919725,0.084171526,0.000349549,0.00006716956,0.0003220637,0.010334605,0.00054537866,0.0052165166],"genre_scores_gemma":[0.8202618,0.009298165,0.12442163,0.00037318945,0.000054693177,0.00065209717,0.03622251,0.00032805803,0.008387892],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982303,0.00001447578,0.00001895716,0.000045145385,0.00006959164,0.000028832872],"domain_scores_gemma":[0.99973375,0.00008528614,0.00005039869,0.000043324162,0.000048038422,0.000039138555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023664362,0.0004607069,0.000423078,0.0011150398,0.0002161721,0.000480646,0.00030705056,0.00024010839,0.000809923],"category_scores_gemma":[0.00036396287,0.00025490578,0.0003108724,0.0010034947,0.00024336159,0.00031193523,0.00037238857,0.0006169075,0.0010082902],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042018964,0.000006039118,0.00024582355,0.00003208797,0.000004020212,0.000031975185,0.000009357923,0.000029511162,0.99836046,0.000030455876,0.000017438708,0.0011907696],"study_design_scores_gemma":[0.000016226642,0.000106100895,0.025807478,0.000023369974,0.00005424652,0.0007177222,0.00006534885,0.0019659027,0.96191096,0.00027170713,0.00904574,0.000015107018],"about_ca_topic_score_codex":0.000667784,"about_ca_topic_score_gemma":0.0013875887,"teacher_disagreement_score":0.0011150398,"about_ca_system_score_codex":0.0002646203,"about_ca_system_score_gemma":0.0002983226,"threshold_uncertainty_score":0.002709508},"labels":[],"label_agreement":null},{"id":"W2129978599","doi":"10.1074/mcp.o115.052209","title":"A High Through-put Platform for Recombinant Antibodies to Folded Proteins","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium; Saskatchewan Cancer Agency; University of Saskatchewan; University of Toronto","funders":"National Human Genome Research Institute; National Institutes of Health; National Cancer Institute; Foundation for the National Institutes of Health","keywords":"Recombinant DNA; Antibody; Computational biology; Chemistry; Computer science; Biology; Biochemistry; Immunology; Gene","score_opus":0.057279868947349225,"score_gpt":0.31745063426431497,"score_spread":0.26017076531696576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129978599","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.146254,0.0017123705,0.8122436,0.0005911852,0.00034713687,0.0009965429,0.0050742975,0.02076349,0.01201745],"genre_scores_gemma":[0.25758073,0.0021884346,0.7003062,0.00066241575,0.00018143885,0.0017516989,0.016047064,0.0033573476,0.017924547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870205,0.00021358837,0.00007791499,0.00025636668,0.00062579324,0.00012430681],"domain_scores_gemma":[0.9993407,0.00015582742,0.00009535583,0.00017665207,0.00014981818,0.00008156333],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015719613,0.0013713711,0.0008037991,0.00134554,0.00049709884,0.0012117547,0.001364015,0.0010443735,0.007378499],"category_scores_gemma":[0.0011183236,0.0008590054,0.0010463748,0.0008580761,0.00037728332,0.00091415585,0.0011997181,0.0020277374,0.00941343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009928727,0.00012978901,0.00035874092,0.00015283363,0.000043830056,0.00014361978,0.000052993168,0.00042213974,0.9797963,0.0009991956,0.0021187668,0.015682638],"study_design_scores_gemma":[0.000046863075,0.00034173802,0.0010769136,0.000021266635,0.0000461437,0.00036785053,0.000014166633,0.003673312,0.9521235,0.00043544307,0.041822873,0.000029823941],"about_ca_topic_score_codex":0.000421722,"about_ca_topic_score_gemma":0.00069037004,"teacher_disagreement_score":0.007378499,"about_ca_system_score_codex":0.00051819725,"about_ca_system_score_gemma":0.00043326893,"threshold_uncertainty_score":0.024683475},"labels":[],"label_agreement":null},{"id":"W2130296644","doi":"10.1074/mcp.m600261-mcp200","title":"Clusterin Expression in Normal Mucosa and Colorectal Cancer","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Clusterin in disease pathology","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Clusterin; Colorectal cancer; Biology; Cancer research; Immunohistochemistry; Stromal cell; Pathology; Cancer; Medicine; Apoptosis","score_opus":0.007939425137941613,"score_gpt":0.26737281991121153,"score_spread":0.25943339477326993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130296644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98419905,0.011242011,0.0009153218,0.00015522267,0.000025776226,0.000026290281,0.00046723525,0.000043539443,0.0029254747],"genre_scores_gemma":[0.99453765,0.0025262737,0.00090379524,0.00004550659,0.000018886463,0.000024779709,0.000490179,0.0000073356055,0.0014455289],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998733,0.000020324273,0.000008485444,0.000036023008,0.00003598901,0.00002586931],"domain_scores_gemma":[0.99985945,0.000025285175,0.000042506297,0.000008998476,0.0000289231,0.000034787747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117368174,0.00010850304,0.00013039923,0.00067132356,0.00021161097,0.00032402322,0.000111845424,0.0002191021,0.00097297167],"category_scores_gemma":[0.00028682154,0.000086277716,0.0000845528,0.0005394766,0.00026170182,0.00014443081,0.00020289331,0.00017890868,0.00017331346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015356177,0.000030606436,0.03632452,0.0002620089,0.000030192336,0.0009276964,0.000179576,0.000105652085,0.9464057,0.0002526828,0.00031886858,0.013626875],"study_design_scores_gemma":[0.000023101791,0.00052516436,0.90254784,0.000025281222,0.00005109788,0.003540323,0.0003802144,0.0007238124,0.08035309,0.0002443157,0.011570913,0.00001495957],"about_ca_topic_score_codex":0.0019538,"about_ca_topic_score_gemma":0.0014634507,"teacher_disagreement_score":0.0019538,"about_ca_system_score_codex":0.00045389708,"about_ca_system_score_gemma":0.00021003243,"threshold_uncertainty_score":0.0038847923},"labels":[],"label_agreement":null},{"id":"W2130422028","doi":"10.1074/mcp.m111.014845","title":"Exosomes as Biomarker Enriched Microvesicles: Characterization of Exosomal Proteins Derived from a Panel of Prostate Cell Lines with Distinct AR Phenotypes","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":228,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Microvesicles; Prostate cancer; Microvesicle; Biomarker; Cancer research; Exosome; Proteomics; Tumor microenvironment; Prostate; Biology; Medicine; Cancer; Cell biology; microRNA; Internal medicine; Tumor cells","score_opus":0.008866447404273855,"score_gpt":0.20799875221089087,"score_spread":0.199132304806617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130422028","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98868036,0.0020236152,0.0066995034,0.00007877696,0.000026284353,0.0000809463,0.0017037315,0.000041353775,0.0006653371],"genre_scores_gemma":[0.98109883,0.002006585,0.01100735,0.00010305504,0.00001613433,0.00009239556,0.0045349863,0.000037270136,0.001103401],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998988,0.000017008191,0.000015161338,0.000019086858,0.0000337482,0.000016197648],"domain_scores_gemma":[0.99988437,0.00002662758,0.000021620548,0.0000095108135,0.000031323474,0.000026609812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022075912,0.00022530052,0.00022329966,0.0005069731,0.00016973008,0.00037298974,0.0001151284,0.00025506577,0.00029071272],"category_scores_gemma":[0.00032014897,0.00006322263,0.00021261757,0.0004168782,0.00013165311,0.00026050542,0.00035571435,0.0002222741,0.00020231861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006972608,0.000014187397,0.0018077989,0.000037127455,0.000009943373,0.00011413497,0.000030245641,0.000043302163,0.9959741,0.00006412553,0.000043851047,0.0017915055],"study_design_scores_gemma":[0.000018189161,0.0003486153,0.07133108,0.00003192705,0.000079074714,0.0025698463,0.0001753931,0.0015688429,0.91548437,0.00020406702,0.008162042,0.000026412401],"about_ca_topic_score_codex":0.00023174298,"about_ca_topic_score_gemma":0.00028956114,"teacher_disagreement_score":0.0005069731,"about_ca_system_score_codex":0.0000798172,"about_ca_system_score_gemma":0.000155389,"threshold_uncertainty_score":0.0011675358},"labels":[],"label_agreement":null},{"id":"W2130645032","doi":"10.1074/mcp.m111.016550","title":"An Interaction Map of Endoplasmic Reticulum Chaperones and Foldases","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Toxin Mechanisms and Immunotoxins","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institutes of Health Research; Concordia University; McGill University","funders":"Canadian Institutes of Health Research; University of Saskatchewan; Faculty of Medicine, McGill University; McGill University","keywords":"Foldase; Endoplasmic reticulum; Chaperone (clinical); Cyclophilin; Protein folding; Protein disulfide-isomerase; Isomerase; Cell biology; Cyclophilin A; Chemical chaperone; Co-chaperone; Biology; Unfolded protein response; Chemistry; Biochemistry; Molecular biology; Escherichia coli; Hsp70; Enzyme; Heat shock protein; GroEL","score_opus":0.0077127896121538505,"score_gpt":0.22114902213978635,"score_spread":0.2134362325276325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130645032","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9631239,0.005777577,0.017525183,0.000565798,0.00002306925,0.00003433167,0.00051790953,0.00016990022,0.012262286],"genre_scores_gemma":[0.9743372,0.0018620517,0.014735508,0.00013193543,0.000022225668,0.000022714836,0.0008627991,0.000021870534,0.008003775],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999143,0.000011383967,0.000003939559,0.000021200576,0.000030775343,0.000018479446],"domain_scores_gemma":[0.9999212,0.000010898802,0.000016928938,0.000004941966,0.000020178617,0.000025849095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007126628,0.0002805933,0.00015735882,0.0005268511,0.00034926974,0.00048586415,0.00020782997,0.0002665818,0.0016507918],"category_scores_gemma":[0.0000963407,0.00017246694,0.00021579649,0.00031503147,0.00013398057,0.00034084,0.0002658734,0.0003428119,0.0009340904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024381075,0.000040439394,0.0023010403,0.00007261694,0.000016417966,0.0004129679,0.00006475337,0.0004098243,0.9817693,0.0023590003,0.0004086819,0.011901168],"study_design_scores_gemma":[0.000065807464,0.000541914,0.12570444,0.00006856782,0.00013608354,0.0035247167,0.00052477524,0.014814251,0.78863984,0.006378224,0.059557106,0.000044326727],"about_ca_topic_score_codex":0.0008461516,"about_ca_topic_score_gemma":0.00073866366,"teacher_disagreement_score":0.0016507918,"about_ca_system_score_codex":0.0004440867,"about_ca_system_score_gemma":0.00033002812,"threshold_uncertainty_score":0.00552243},"labels":[],"label_agreement":null},{"id":"W2131033800","doi":"10.1074/mcp.m110.000349","title":"Comparative Proteomics Indicates That Biosynthesis of Pectic Precursors Is Important for Cotton Fiber and Arabidopsis Root Hair Elongation","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Research in Cotton Cultivation","field":"Agricultural and Biological Sciences","cited_by":188,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Key Research and Development Program of China; Higher Education Discipline Innovation Project; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Pectin; Cell wall; Biochemistry; Secondary cell wall; Arabidopsis; Arabinose; Root hair; Mutant; Hemicellulose; Gibberellic acid; Elongation; Biology; Chemistry; Botany; Xylose; Cellulose; Gene; Fermentation; Germination","score_opus":0.025636828697310418,"score_gpt":0.2569892839533144,"score_spread":0.23135245525600395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131033800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99376184,0.0012582828,0.0029253103,0.00006769592,0.000015021926,0.000011390224,0.00090869353,0.00008155227,0.0009701873],"genre_scores_gemma":[0.9886634,0.00074561586,0.004310237,0.0000797854,0.000011044296,0.000024041154,0.002133419,0.00005592178,0.003976487],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992096,0.0000038719327,0.0000052308874,0.000036463593,0.000016239688,0.000017188197],"domain_scores_gemma":[0.999871,0.000013850221,0.000040830924,0.000008537757,0.000022757407,0.000042980046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009381798,0.00043516056,0.00023334112,0.0003337977,0.00018835513,0.0002642429,0.00012633379,0.00025450316,0.0012372885],"category_scores_gemma":[0.00011099843,0.00018059036,0.0004188865,0.00021958332,0.00013291843,0.00033960858,0.00019082264,0.0003294261,0.00038714125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035227145,0.0000024190658,0.0002855183,0.000014136936,0.000001977784,0.000029103094,0.0000072483,0.000008240563,0.9991992,0.000010848101,0.000007068667,0.0003990108],"study_design_scores_gemma":[0.000013190108,0.00022437096,0.2678573,0.000009027881,0.000047696954,0.0011346942,0.00009127842,0.0010715437,0.7266914,0.00008881066,0.0027503697,0.000020213001],"about_ca_topic_score_codex":0.0012265531,"about_ca_topic_score_gemma":0.0016626052,"teacher_disagreement_score":0.0012372885,"about_ca_system_score_codex":0.00029171415,"about_ca_system_score_gemma":0.0001688513,"threshold_uncertainty_score":0.004139185},"labels":[],"label_agreement":null},{"id":"W2131457893","doi":"10.1074/mcp.m114.040196","title":"Progesterone Receptor Membrane Component 1 Is a Functional Part of the Glucagon-like Peptide-1 (GLP-1) Receptor Complex in Pancreatic β Cells","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Diabetes Treatment and Management","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Glucagon-like peptide 1 receptor; Cell biology; Receptor; Signal transduction; G protein-coupled receptor; Chemistry; Chinese hamster ovary cell; Internal medicine; Endocrinology; Biology; Biochemistry; Agonist; Medicine","score_opus":0.015588650843865293,"score_gpt":0.2086035206510682,"score_spread":0.19301486980720292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131457893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8661031,0.08282828,0.017438192,0.0030404783,0.0007651033,0.00017690452,0.006070756,0.0014289869,0.022148263],"genre_scores_gemma":[0.95110637,0.014942538,0.0067633763,0.00039550665,0.0001488062,0.00008183635,0.0043991143,0.00010265605,0.02205987],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999759,0.000031618638,0.000014113891,0.00007958649,0.00007235881,0.000043316504],"domain_scores_gemma":[0.9999131,0.000007938077,0.000027395496,0.000011937746,0.000016556922,0.00002301219],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012390381,0.00034702246,0.0003508056,0.00045458318,0.000628633,0.00038219063,0.0002694794,0.00047292947,0.0053842436],"category_scores_gemma":[0.00031392724,0.00019706305,0.00044888305,0.0005259993,0.00020995815,0.00026714947,0.00032122392,0.00046743584,0.0030821534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002454689,0.000016524185,0.002106684,0.00028336624,0.00003144046,0.0007014737,0.00008357771,0.000089490575,0.9768067,0.0008149542,0.0012738975,0.017546436],"study_design_scores_gemma":[0.00010329998,0.00039736743,0.0963584,0.00012417094,0.0001728216,0.009658046,0.00032448658,0.0020840936,0.6346437,0.0008140475,0.2552667,0.000053014115],"about_ca_topic_score_codex":0.0019238063,"about_ca_topic_score_gemma":0.0013509613,"teacher_disagreement_score":0.0053842436,"about_ca_system_score_codex":0.0005286265,"about_ca_system_score_gemma":0.00034747264,"threshold_uncertainty_score":0.018012047},"labels":[],"label_agreement":null},{"id":"W2131950744","doi":"10.1074/mcp.h900006-mcp200","title":"Report on the Barbados Workshop","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"","keywords":"MEDLINE; Chemistry; Biochemistry","score_opus":0.011098861683777711,"score_gpt":0.2526060434827529,"score_spread":0.24150718179897518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131950744","genre_codex":"other","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024726197,0.024510752,0.0060700285,0.2587566,0.19629385,0.0031998944,0.01927886,0.0018423896,0.46532142],"genre_scores_gemma":[0.039793413,0.0062192595,0.0036608211,0.02898007,0.0063586473,0.0012194226,0.009729622,0.001081202,0.9029575],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9911039,0.0012170252,0.0002297611,0.0012502413,0.0031202259,0.0030789082],"domain_scores_gemma":[0.9841867,0.00051493896,0.00039208113,0.00054567354,0.0056079854,0.008752618],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009932343,0.0013712419,0.0011228428,0.0016244064,0.010692215,0.00852394,0.0030725757,0.005013718,0.15682362],"category_scores_gemma":[0.0078684045,0.0007419381,0.0014461956,0.0013340833,0.00095786044,0.0019309426,0.009512645,0.0075682644,0.08327674],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022392345,0.00013908655,0.000703566,0.00016677818,0.000014100368,0.00029933307,0.00058230624,0.00007804788,0.00053483294,0.0029952913,0.972421,0.021841818],"study_design_scores_gemma":[0.00001734157,0.000049180275,0.00196084,0.000108757784,0.0000067427854,0.00002719357,0.0009520544,0.00001795086,0.0001558558,0.00025860625,0.99643046,0.0000149849675],"about_ca_topic_score_codex":0.12664607,"about_ca_topic_score_gemma":0.2169725,"teacher_disagreement_score":0.15682362,"about_ca_system_score_codex":0.011203844,"about_ca_system_score_gemma":0.029056098,"threshold_uncertainty_score":0.52462727},"labels":[],"label_agreement":null},{"id":"W2132058414","doi":"10.1074/mcp.m114.047571","title":"Immunocapture-Selected Reaction Monitoring Screening Facilitates the Development of ELISA for the Measurement of Native TEX101 in Biological Fluids*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto; University Health Network","funders":"","keywords":"Computational biology; Chromatography; Chemistry; Biology","score_opus":0.11658579093574198,"score_gpt":0.31712541458078614,"score_spread":0.20053962364504416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132058414","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42353252,0.0069387746,0.55785984,0.0005462786,0.00026910644,0.00065995846,0.0010506454,0.0025606395,0.00658218],"genre_scores_gemma":[0.6865596,0.0033563068,0.3016257,0.00038851795,0.00014007335,0.0005897719,0.0013238975,0.0001659717,0.0058502518],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983045,0.00061797537,0.00007869705,0.0003474231,0.000529565,0.000121815625],"domain_scores_gemma":[0.9988036,0.0004844579,0.000263347,0.00017220258,0.00018322883,0.00009306197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015071974,0.0013771744,0.00058085023,0.0008965625,0.00019833223,0.00076539547,0.0008412773,0.000928108,0.0017088816],"category_scores_gemma":[0.00128305,0.00039865915,0.00043643484,0.00046744832,0.0005050082,0.0005040279,0.0005503828,0.0009239035,0.0014906718],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048620557,0.000053866013,0.00052364887,0.00006259667,0.000009570651,0.00004849881,0.000012461822,0.00011370606,0.99348503,0.00019051883,0.00012680523,0.005324678],"study_design_scores_gemma":[0.0000068433405,0.00028098037,0.0015023345,0.0000077307,0.000013021339,0.00027777968,0.000007719811,0.0038628539,0.9916299,0.000060457187,0.0023423003,0.000007991281],"about_ca_topic_score_codex":0.00012905941,"about_ca_topic_score_gemma":0.00026108677,"teacher_disagreement_score":0.0017088816,"about_ca_system_score_codex":0.00027423498,"about_ca_system_score_gemma":0.00020065221,"threshold_uncertainty_score":0.00797087},"labels":[],"label_agreement":null},{"id":"W2132319659","doi":"10.1074/mcp.m110.007252","title":"Uncovering the Proteome Response of the Master Circadian Clock to Light Using an AutoProteome System","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Circadian rhythm and melatonin","field":"Neuroscience","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Proteome; Suprachiasmatic nucleus; Proteomics; Circadian rhythm; Chemistry; Circadian clock; Biology; Cell biology; Biochemistry; Computational biology; Neuroscience","score_opus":0.03939383931234376,"score_gpt":0.22396312312082256,"score_spread":0.1845692838084788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132319659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94004375,0.0027854764,0.0524808,0.00017512352,0.000050942857,0.000071411014,0.0028798243,0.0005649192,0.0009476997],"genre_scores_gemma":[0.87512016,0.003790757,0.11093776,0.0003860741,0.00008728629,0.00018154415,0.007406916,0.00016276662,0.0019267609],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998517,0.000013344467,0.0000075264124,0.00006416692,0.00004517562,0.000018054167],"domain_scores_gemma":[0.9998983,0.000016635466,0.000031348478,0.000011147794,0.000022069875,0.0000205316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024679294,0.00041459387,0.00036320725,0.000791257,0.0002256262,0.000421418,0.0002693936,0.00032160422,0.00063748035],"category_scores_gemma":[0.0001679875,0.00018822282,0.00042331096,0.00038326107,0.00017849581,0.0004988389,0.00047363326,0.00041666484,0.00031870793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006033096,0.000014956248,0.0020866413,0.00005917726,0.000026973416,0.00004251304,0.000018656252,0.00012644568,0.9930177,0.00010657953,0.000086516506,0.0043534674],"study_design_scores_gemma":[0.000032753676,0.00039703771,0.18050316,0.000037577855,0.00018644737,0.0014007672,0.00013309388,0.03536463,0.7724888,0.0010655794,0.008331953,0.000058143076],"about_ca_topic_score_codex":0.0004559022,"about_ca_topic_score_gemma":0.0007871355,"teacher_disagreement_score":0.000791257,"about_ca_system_score_codex":0.00020214311,"about_ca_system_score_gemma":0.00025184194,"threshold_uncertainty_score":0.002132535},"labels":[],"label_agreement":null},{"id":"W2132451011","doi":"10.1074/mcp.m700083-mcp200","title":"Enabling Coupled Quantitative Genomics and Proteomics Analyses from Rat Spinal Cord Samples","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency; University of British Columbia; International Collaboration On Repair Discoveries; University of Calgary","funders":"","keywords":"Proteomics; Genomics; Computational biology; Spinal cord; Quantitative proteomics; Biology; Genome; Neuroscience; Genetics; Gene","score_opus":0.04102515962690787,"score_gpt":0.33584631262120207,"score_spread":0.2948211529942942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132451011","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4078933,0.002549701,0.58044803,0.00036197924,0.000116247174,0.0008407284,0.0037855266,0.0018097797,0.0021947017],"genre_scores_gemma":[0.29336074,0.0022762932,0.6940701,0.00033772746,0.00011512359,0.0018292664,0.0049721254,0.00042151505,0.0026170292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998616,0.00024430218,0.00012872851,0.00040442147,0.00047973436,0.0001268988],"domain_scores_gemma":[0.99921215,0.00028564918,0.0001040043,0.00014550224,0.00020588769,0.000046817026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016335191,0.00088923867,0.0010786903,0.0010433329,0.0005090182,0.0009597807,0.00081126235,0.0006233235,0.001280953],"category_scores_gemma":[0.0014437415,0.00059863256,0.0006117897,0.0009448288,0.0006122695,0.00091404037,0.0008725837,0.0011430385,0.00088523416],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003522672,0.000014786579,0.000073275325,0.000044472603,0.0000052607247,0.000008118496,0.0000075147645,0.000076258184,0.9979207,0.00007216386,0.000023016744,0.0017191841],"study_design_scores_gemma":[0.000016923743,0.00017978613,0.0027839171,0.0000074373374,0.000027357764,0.00011740473,0.000021408983,0.0023803897,0.9926312,0.000309077,0.0015110137,0.000014138886],"about_ca_topic_score_codex":0.0010142917,"about_ca_topic_score_gemma":0.0027289302,"teacher_disagreement_score":0.0016335191,"about_ca_system_score_codex":0.0005919599,"about_ca_system_score_gemma":0.0008715242,"threshold_uncertainty_score":0.008639038},"labels":[],"label_agreement":null},{"id":"W2132809955","doi":"10.1074/mcp.m111.013672","title":"Quantitative Proteomic Analysis of Type III Secretome of Enteropathogenic Escherichia coli Reveals an Expanded Effector Repertoire for Attaching/Effacing Bacterial Pathogens","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"British Columbia Knowledge Development Fund; Canadian Institutes of Health Research; Genome British Columbia; Genome Canada; Howard Hughes Medical Institute","keywords":"Effector; Virulence; Biology; Microbiology; Secretion; Enteropathogenic Escherichia coli; Bacterial adhesin; Pathogen; Escherichia coli; Salmonella enterica; Type three secretion system; Citrobacter rodentium; Stable isotope labeling by amino acids in cell culture; Proteome; Intimin; Virulence factor; Enterobacteriaceae; Proteomics; Gene; Biochemistry","score_opus":0.02099407333039062,"score_gpt":0.3039747187746149,"score_spread":0.2829806454442243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132809955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99609536,0.00032029414,0.0028761888,0.000026295056,0.0000061841492,0.000009008462,0.00041016127,0.000020854335,0.00023572479],"genre_scores_gemma":[0.98782176,0.000648816,0.008675579,0.00011130552,0.000008588741,0.00003183359,0.0017915802,0.00002065435,0.0008899144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999063,0.000011357721,0.000010216359,0.00002462036,0.00003067948,0.000016860964],"domain_scores_gemma":[0.99990785,0.000018929375,0.000021573023,0.000009613536,0.000023212271,0.000018784876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014130946,0.00024811013,0.00021229143,0.00038547334,0.00011697521,0.00028310603,0.00009725655,0.00020104,0.0002434702],"category_scores_gemma":[0.00016228022,0.000084792686,0.00021421675,0.00029475498,0.00013991864,0.00015527406,0.00014759268,0.00026482122,0.00010059163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004042344,0.000004127542,0.0006940025,0.0000110179735,0.0000024980075,0.000022636668,0.000008424691,0.000019442268,0.99869305,0.000006525942,0.0000064611227,0.0004914325],"study_design_scores_gemma":[0.0000070654523,0.00016957152,0.1243768,0.000012305751,0.00005099235,0.0008051252,0.00017155417,0.0039369185,0.86899656,0.00007463137,0.0013830808,0.00001542254],"about_ca_topic_score_codex":0.0004099436,"about_ca_topic_score_gemma":0.00042198197,"teacher_disagreement_score":0.0004099436,"about_ca_system_score_codex":0.0001121283,"about_ca_system_score_gemma":0.00009893201,"threshold_uncertainty_score":0.0008151531},"labels":[],"label_agreement":null},{"id":"W2133258252","doi":"10.1074/mcp.m400031-mcp200","title":"An Improved Model for Prediction of Retention Times of Tryptic Peptides in Ion Pair Reversed-phase HPLC","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Analytical Chemistry and Chromatography","field":"Chemistry","cited_by":287,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; University of Manitoba","keywords":"Chromatography; Chemistry; High-performance liquid chromatography; Retention time; Phase (matter); Organic chemistry","score_opus":0.011917691612844086,"score_gpt":0.2349174314879254,"score_spread":0.22299973987508132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133258252","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.046826314,0.00083953433,0.9473748,0.00020040492,0.00007704334,0.00011332363,0.00041915194,0.0017129375,0.0024365028],"genre_scores_gemma":[0.8612785,0.0010848405,0.12665957,0.0002501516,0.00008600282,0.0010712758,0.001168578,0.0002669115,0.008134101],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99953794,0.000098797565,0.00002518013,0.00015528504,0.00010912349,0.00007368175],"domain_scores_gemma":[0.9993647,0.0003819231,0.00006205295,0.000020841011,0.00015070035,0.000019851654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008615797,0.0015257384,0.001202157,0.00070584874,0.00037565196,0.0012557523,0.001566389,0.0015741286,0.0015680933],"category_scores_gemma":[0.0018118815,0.0005657632,0.0011894567,0.00051647384,0.000394117,0.00081191777,0.000564371,0.0013904287,0.0009202075],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015247663,0.00007163413,0.0010565823,0.00015255329,0.00007606703,0.00016625851,0.000048839982,0.9630827,0.0065101786,0.0013128441,0.0007684476,0.026601465],"study_design_scores_gemma":[0.000006406033,0.000020171468,0.00023011609,0.0000052568203,0.000010687761,0.000018531575,0.0000017807617,0.99863416,0.00050977024,0.0003450966,0.00020933074,0.000008714606],"about_ca_topic_score_codex":0.012706822,"about_ca_topic_score_gemma":0.007223248,"teacher_disagreement_score":0.012706822,"about_ca_system_score_codex":0.0010284755,"about_ca_system_score_gemma":0.0014920351,"threshold_uncertainty_score":0.025265694},"labels":[],"label_agreement":null},{"id":"W2133686469","doi":"10.1074/mcp.m500231-mcp200","title":"A Novel, Evolutionarily Conserved Protein Phosphatase Complex Involved in Cisplatin Sensitivity","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":191,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Heart, Lung, and Blood Institute","keywords":"Saccharomyces cerevisiae; Protein subunit; Cisplatin; DNA damage; Biology; Tandem affinity purification; Phosphatase; DNA repair; DNA; Protein phosphatase 2; Biochemistry; Molecular biology; Yeast; Genetics; Phosphorylation; Gene; Enzyme; Affinity chromatography","score_opus":0.014444720711456995,"score_gpt":0.22437506276478647,"score_spread":0.20993034205332947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133686469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9678639,0.0043689283,0.023813648,0.00027270825,0.00006521844,0.00011975286,0.0013937856,0.00033207,0.0017700057],"genre_scores_gemma":[0.97251046,0.0016383377,0.018617213,0.00016392021,0.00002501589,0.000057350695,0.0035583992,0.00006502821,0.0033641974],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985635,0.0000145456215,0.000013757761,0.000047882753,0.00004802242,0.00001945124],"domain_scores_gemma":[0.99987304,0.000017703354,0.000040529947,0.000014522163,0.00002411781,0.000030091338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014074532,0.000740897,0.0004172193,0.00045435727,0.00019757797,0.0004478586,0.00035004228,0.0004957743,0.0008801327],"category_scores_gemma":[0.00026579632,0.00025629756,0.00047241402,0.00029638744,0.00025537235,0.0003240686,0.0003460551,0.0004548593,0.0005530419],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005673693,0.000010613201,0.0012597253,0.00005137892,0.000023086694,0.00021444011,0.00000977499,0.00018998957,0.99659663,0.000097559394,0.000065358705,0.0014246596],"study_design_scores_gemma":[0.000023415036,0.00011435158,0.023741461,0.000004689496,0.000080382604,0.0029613187,0.000024408953,0.004985233,0.95920485,0.00023859275,0.008597112,0.00002417315],"about_ca_topic_score_codex":0.00097214425,"about_ca_topic_score_gemma":0.0010360576,"teacher_disagreement_score":0.00097214425,"about_ca_system_score_codex":0.00052834617,"about_ca_system_score_gemma":0.0003519632,"threshold_uncertainty_score":0.0038334727},"labels":[],"label_agreement":null},{"id":"W2133861042","doi":"10.1074/mcp.t100009-mcp200","title":"Fully Automated Two-dimensional Capillary Electrophoresis for High Sensitivity Protein Analysis","year":2002,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microfluidic and Capillary Electrophoresis Applications","field":"Engineering","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Capillary electrophoresis; Chemistry; Chromatography; Electropherogram; Reagent; Fluorescence; Capillary action; Electrophoresis; Laser-induced fluorescence; Analytical Chemistry (journal); Materials science","score_opus":0.0048604362858012074,"score_gpt":0.18454561815779613,"score_spread":0.17968518187199492,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133861042","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.036246225,0.0063095433,0.9397397,0.00049271074,0.000537822,0.0006909932,0.0013772834,0.010642502,0.0039633205],"genre_scores_gemma":[0.07480789,0.0024739185,0.91005445,0.00042630572,0.00012080291,0.0011695401,0.0028813698,0.00045143833,0.007614307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973231,0.00047371862,0.00013028002,0.00040413867,0.0015224307,0.00014641296],"domain_scores_gemma":[0.9988674,0.00031612878,0.00009239015,0.00017682623,0.00044144902,0.00010591391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013300198,0.0012824239,0.00079281174,0.0014497787,0.00070520595,0.0009979897,0.0016429971,0.0012004811,0.004145472],"category_scores_gemma":[0.0012234086,0.00059978786,0.0005945372,0.000766936,0.0005569171,0.0011126567,0.0010508057,0.0013501458,0.0022888898],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016575205,0.00013435088,0.0004918261,0.00037600732,0.00007536494,0.00010805912,0.00007975504,0.000493338,0.90562403,0.002690488,0.006289172,0.083471864],"study_design_scores_gemma":[0.00012134188,0.00044286903,0.0036911648,0.000093835064,0.00008322362,0.0017041214,0.000029318093,0.038348563,0.850288,0.0026917255,0.10228044,0.00022540195],"about_ca_topic_score_codex":0.001235309,"about_ca_topic_score_gemma":0.0020406612,"teacher_disagreement_score":0.004145472,"about_ca_system_score_codex":0.0007139052,"about_ca_system_score_gemma":0.00097120873,"threshold_uncertainty_score":0.013867974},"labels":[],"label_agreement":null},{"id":"W2133993665","doi":"10.1074/mcp.m800113-mcp200","title":"Prevention of Amino Acid Conversion in SILAC Experiments with Embryonic Stem Cells","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":210,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Western University","funders":"","keywords":"Stable isotope labeling by amino acids in cell culture; Embryonic stem cell; Stem cell; Cell biology; Chemistry; Amino acid; Computational biology; Biochemistry; Biology; Proteomics","score_opus":0.015110408706058225,"score_gpt":0.23838503679111628,"score_spread":0.22327462808505805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133993665","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.34661624,0.010154559,0.6137235,0.0012207024,0.0018424069,0.0028379352,0.0026509895,0.00623025,0.01472333],"genre_scores_gemma":[0.36973315,0.010153608,0.59165305,0.0015079173,0.00027421594,0.0038950257,0.005409985,0.0030016429,0.014371369],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99701333,0.0007885011,0.0003699012,0.0006697908,0.0009405478,0.00021789358],"domain_scores_gemma":[0.99747986,0.0007650094,0.0004678135,0.0006006818,0.00052962534,0.00015703366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034081147,0.0014899897,0.00092138315,0.0007108201,0.00091342063,0.0010981163,0.0013542959,0.0009547322,0.002262629],"category_scores_gemma":[0.002763037,0.00067909335,0.0006399046,0.0006558091,0.0010403071,0.0007461221,0.0013482871,0.00294798,0.0022679716],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010045238,0.000039248232,0.00013225489,0.00021588507,0.000020544794,0.00012392603,0.00014877548,0.00006785536,0.9953067,0.00033913853,0.0002479063,0.0032573137],"study_design_scores_gemma":[0.000009125554,0.00006824906,0.00035763445,0.000021781654,0.000016147096,0.00011468873,0.000020502795,0.0005093018,0.99161184,0.00009103133,0.007167442,0.0000122035635],"about_ca_topic_score_codex":0.00067387737,"about_ca_topic_score_gemma":0.0017004886,"teacher_disagreement_score":0.0034081147,"about_ca_system_score_codex":0.0004492561,"about_ca_system_score_gemma":0.0010347787,"threshold_uncertainty_score":0.018024087},"labels":[],"label_agreement":null},{"id":"W2134981162","doi":"10.1074/mcp.m700090-mcp200","title":"Proteomics Analysis of Human Amniotic Fluid","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Neonatal Respiratory Health Research","field":"Medicine","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Amniotic fluid; Proteomics; Computational biology; Chemistry; Biology; Pregnancy; Fetus; Biochemistry; Genetics","score_opus":0.0271178904904363,"score_gpt":0.34957208332528056,"score_spread":0.3224541928348443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134981162","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96602297,0.015301532,0.012882362,0.00017570793,0.000085667845,0.00012737463,0.0027069808,0.00020040982,0.0024970989],"genre_scores_gemma":[0.9505579,0.011893156,0.028706495,0.00019050673,0.00006517778,0.00017115343,0.0047720894,0.000059806393,0.0035837546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99981433,0.00003004501,0.000015061891,0.000046382294,0.00007154363,0.000022748722],"domain_scores_gemma":[0.99993145,0.000016173986,0.000011859612,0.000006459856,0.000023457815,0.000010597129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002813677,0.00037625892,0.000297892,0.00092472206,0.00029184157,0.00043114997,0.00017581966,0.0002208109,0.00056972867],"category_scores_gemma":[0.0004253845,0.00007866913,0.00022809657,0.0005851209,0.00011965492,0.00018523104,0.00027002877,0.00017044303,0.00037550033],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016632443,0.000016630087,0.0045400877,0.00015167716,0.000028808821,0.00058490894,0.00009019743,0.00009075629,0.9809074,0.0000706895,0.000114529495,0.013238119],"study_design_scores_gemma":[0.000025845877,0.00037242047,0.1072934,0.0001110374,0.000105008054,0.004881447,0.00036334485,0.003588314,0.86180305,0.0004448355,0.02097775,0.000033500266],"about_ca_topic_score_codex":0.0008274876,"about_ca_topic_score_gemma":0.00048089738,"teacher_disagreement_score":0.00092472206,"about_ca_system_score_codex":0.00013869932,"about_ca_system_score_gemma":0.00031075475,"threshold_uncertainty_score":0.0019059181},"labels":[],"label_agreement":null},{"id":"W2135078307","doi":"10.1074/mcp.m111.010587","title":"PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":1114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Waterloo; Bioinformatics Solutions (Canada)","funders":"","keywords":"Computational biology; Identification (biology); Biology; Chemistry; Computer science","score_opus":0.043655124025719035,"score_gpt":0.28469057818430626,"score_spread":0.24103545415858724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135078307","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.016543442,0.0062739872,0.6727862,0.0006875578,0.0007011809,0.0016906026,0.049530182,0.23810622,0.013680676],"genre_scores_gemma":[0.032268576,0.0024341885,0.84242576,0.0013306235,0.00017508765,0.0022464704,0.097934596,0.011754274,0.009430384],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99598086,0.0006393597,0.0005314088,0.0007718265,0.0017152713,0.00036119018],"domain_scores_gemma":[0.99787617,0.00065328565,0.0003213687,0.00029909753,0.0006239114,0.00022608846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004994333,0.0030342687,0.0025069057,0.00453583,0.0012195824,0.0035076996,0.0040326254,0.00149959,0.017628131],"category_scores_gemma":[0.003871391,0.0016932687,0.0016675441,0.002722571,0.00066834106,0.0031673335,0.00295964,0.003495306,0.021722544],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048034615,0.00066783297,0.00425037,0.004081256,0.0009762728,0.0015459422,0.0003682687,0.0037865532,0.24455228,0.011197454,0.33832878,0.38544154],"study_design_scores_gemma":[0.0013718017,0.00095922773,0.0059156334,0.0004602688,0.00034300247,0.004145597,0.00023458917,0.09580888,0.37929106,0.012691964,0.49821427,0.0005636858],"about_ca_topic_score_codex":0.0011424806,"about_ca_topic_score_gemma":0.0014577683,"teacher_disagreement_score":0.017628131,"about_ca_system_score_codex":0.00094884046,"about_ca_system_score_gemma":0.0026578407,"threshold_uncertainty_score":0.058972},"labels":[],"label_agreement":null},{"id":"W2135656020","doi":"10.1074/mcp.m500025-mcp200","title":"Biochemical Clustering of Monomeric GTPases of the Ras Superfamily","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"PerkinElmer Biosignal; Université du Québec à Montréal; McGill University","funders":"","keywords":"SUPERFAMILY; Ras superfamily; GTPase; Cluster analysis; Computational biology; Chemistry; Cell biology; Biology; Biochemistry; Computer science; Gene; Enzyme; Artificial intelligence; GTP'","score_opus":0.0071228272821525105,"score_gpt":0.2091865462658338,"score_spread":0.20206371898368128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135656020","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.75428027,0.0024029727,0.23504245,0.00020204438,0.000052788775,0.00030135905,0.0015305632,0.0015112545,0.0046763625],"genre_scores_gemma":[0.7259746,0.0014707007,0.26428628,0.000049247174,0.00001628286,0.00017870836,0.0048578945,0.00013861552,0.0030276459],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992855,0.00012776033,0.00005205388,0.0001793727,0.00029145845,0.00006383604],"domain_scores_gemma":[0.9993749,0.000092754824,0.000116242794,0.000088531335,0.0002758044,0.000051779873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004008332,0.0004769528,0.00038962803,0.00343249,0.0005270831,0.00080652966,0.00038642593,0.00033183402,0.0007687972],"category_scores_gemma":[0.0010508953,0.00021266581,0.00054526154,0.0015183107,0.00034473863,0.0003217833,0.00042996177,0.0003364575,0.0007334883],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001834474,0.000101379046,0.017263193,0.00034633712,0.00010795871,0.0002051817,0.000465293,0.008800996,0.8492119,0.0033202195,0.00085618324,0.11913813],"study_design_scores_gemma":[0.000026702073,0.00045078967,0.17373152,0.00009494111,0.00025162756,0.0016828506,0.0010694835,0.2074948,0.5764498,0.009377749,0.029221712,0.00014807707],"about_ca_topic_score_codex":0.0020607077,"about_ca_topic_score_gemma":0.0020923782,"teacher_disagreement_score":0.00343249,"about_ca_system_score_codex":0.0006482305,"about_ca_system_score_gemma":0.0007305079,"threshold_uncertainty_score":0.0047032833},"labels":[],"label_agreement":null},{"id":"W2135684190","doi":"10.1074/mcp.o112.021022","title":"The Human PDZome: A Gateway to PSD95-Disc Large-Zonula Occludens (PDZ)-mediated Functions","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Hippo pathway signaling and YAP/TAZ","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Institut National Du Cancer; Ligue Contre le Cancer; Agence Nationale de la Recherche; Infrastructures en Biologie Santé et Agronomie","keywords":"PDZ domain; Cell biology; Chemistry; Biology","score_opus":0.0055541792162696,"score_gpt":0.2187249819937744,"score_spread":0.2131708027775048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135684190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4737925,0.00463803,0.38866886,0.0013364343,0.00072091,0.006251141,0.06205276,0.02418113,0.038358197],"genre_scores_gemma":[0.5205923,0.00547983,0.26985553,0.000627202,0.00010066325,0.0055973097,0.11626788,0.003921703,0.07755761],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994143,0.00008372035,0.000055995362,0.00011740888,0.00022399193,0.00010456484],"domain_scores_gemma":[0.9998448,0.000040224495,0.000028175511,0.00003513073,0.000013127908,0.00003864108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005413278,0.0010201343,0.000863549,0.001065734,0.0005650379,0.00092531607,0.0017883265,0.0008660272,0.0073085497],"category_scores_gemma":[0.00029843947,0.00085651665,0.0006407626,0.00067421654,0.0003793775,0.00057316304,0.0015664734,0.00206798,0.0060723196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045012208,0.00017636114,0.00023310306,0.0001632532,0.000026346474,0.00014816015,0.00010986496,0.00024986517,0.98311734,0.0022748273,0.0032114228,0.009839332],"study_design_scores_gemma":[0.00034935022,0.00035355726,0.004011262,0.000064152926,0.00006161795,0.00069106603,0.00005813665,0.0043824688,0.79693955,0.0008624833,0.19215791,0.00006845913],"about_ca_topic_score_codex":0.00078386255,"about_ca_topic_score_gemma":0.0017248302,"teacher_disagreement_score":0.0073085497,"about_ca_system_score_codex":0.00071397837,"about_ca_system_score_gemma":0.00042939634,"threshold_uncertainty_score":0.024449527},"labels":[],"label_agreement":null},{"id":"W2135976131","doi":"10.1074/mcp.o111.015446","title":"Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute","keywords":"Computer science; Data science; Data quality; Quality (philosophy); Data sharing; Service (business); World Wide Web; Medicine; Business","score_opus":0.33354315529447637,"score_gpt":0.43051080660177,"score_spread":0.09696765130729362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135976131","genre_codex":"commentary","genre_gemma":"methods","domain_codex":null,"domain_gemma":"reporting","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":"reporting","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013430025,0.01837612,0.08537857,0.79369855,0.04102052,0.0049874545,0.0041525634,0.0029962163,0.048047],"genre_scores_gemma":[0.008884463,0.025416419,0.61643445,0.26706198,0.009948903,0.008843338,0.009208183,0.0018291408,0.05237319],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.8317659,0.06413757,0.030745964,0.006337158,0.061364844,0.005648576],"domain_scores_gemma":[0.46927658,0.15950954,0.022874415,0.024933828,0.30127677,0.022128839],"candidate_categories":["metaresearch","open_science"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.20417751,0.0035347608,0.00311924,0.013840447,0.0041410765,0.022016076,0.01632464,0.028067067,0.018174583],"category_scores_gemma":[0.34370068,0.002615032,0.0059505696,0.015453276,0.0068541244,0.022472987,0.011409278,0.024343012,0.017274627],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000815923,0.0003338612,0.0017991017,0.0018323347,0.000083412255,0.00031588308,0.00081089634,0.0014889248,0.0007928741,0.038109314,0.8575987,0.09675309],"study_design_scores_gemma":[0.00011314188,0.000075755495,0.002126238,0.005770137,0.00008385026,0.00019825305,0.0012790253,0.0011945567,0.00087986304,0.0326162,0.95550567,0.00015726498],"about_ca_topic_score_codex":0.030998988,"about_ca_topic_score_gemma":0.027027147,"teacher_disagreement_score":0.98367536,"about_ca_system_score_codex":0.0111311,"about_ca_system_score_gemma":0.065050736,"threshold_uncertainty_score":0.98139083},"labels":[],"label_agreement":null},{"id":"W2136588287","doi":"10.1074/mcp.m000032-mcp201","title":"A Statistics-based Platform for Quantitative N-terminome Analysis and Identification of Protease Cleavage Products","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"S100 Proteins and Annexins","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia; Deutsche Forschungsgemeinschaft; Centre for Blood Research, University of British Columbia; Michael Smith Health Research BC; Canadian Breast Cancer Research Alliance; Canadian Institutes of Health Research; Cancer Research Society","keywords":"Protease; Isobaric labeling; Computational biology; Peptide; Cleavage (geology); Chemistry; Chromatography; Tandem mass spectrometry; Biology; Mass spectrometry; Biochemistry; Enzyme","score_opus":0.00988394093208225,"score_gpt":0.2546301378275093,"score_spread":0.24474619689542707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136588287","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02332686,0.00010861884,0.9721557,0.000038063223,0.00002733842,0.000057998594,0.0006551248,0.003245857,0.00038451914],"genre_scores_gemma":[0.13401212,0.0001959341,0.860737,0.00008258,0.00006886203,0.00047504474,0.002727721,0.0006709658,0.0010298131],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99839777,0.0003103607,0.00014717387,0.00032040259,0.0007492997,0.00007494029],"domain_scores_gemma":[0.9966073,0.001402931,0.0007201722,0.0005040471,0.0006486843,0.00011685458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00282399,0.0010542851,0.00073142844,0.0020537807,0.0003648571,0.0010792506,0.0008052852,0.00052404986,0.0014138387],"category_scores_gemma":[0.0042508678,0.00039739566,0.00059715606,0.0013180652,0.00087588746,0.0008892608,0.00077961414,0.0011062298,0.0009948224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031202304,0.00009477104,0.0033039975,0.00021882808,0.00009599595,0.00011377416,0.00007773833,0.0058709644,0.8681036,0.00553865,0.0014248564,0.11484468],"study_design_scores_gemma":[0.000035054993,0.00053463265,0.012759738,0.000023742592,0.000082704624,0.0008815106,0.00003362985,0.23028484,0.73839325,0.0077740536,0.009053541,0.00014332196],"about_ca_topic_score_codex":0.0004412262,"about_ca_topic_score_gemma":0.0007187736,"teacher_disagreement_score":0.00282399,"about_ca_system_score_codex":0.0006481104,"about_ca_system_score_gemma":0.0010897346,"threshold_uncertainty_score":0.014934897},"labels":[],"label_agreement":null},{"id":"W2137221657","doi":"10.1074/mcp.o112.020008","title":"Proteomics Propels Protein Degradation Studies in San Diego","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; University of California, San Francisco; Genentech; National Institutes of Health; Celgene","keywords":"Proteomics; Computational biology; Chemistry; Biology; Biochemistry","score_opus":0.033113724454495334,"score_gpt":0.27337491954099785,"score_spread":0.2402611950865025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137221657","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0051028877,0.26047575,0.054301932,0.08112741,0.067072146,0.0005798871,0.006816381,0.019308077,0.5052156],"genre_scores_gemma":[0.013366861,0.12687078,0.053823322,0.015975,0.015104653,0.0010341494,0.006595866,0.0028386351,0.7643907],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99759465,0.00026222575,0.0001463752,0.00051833823,0.0013044673,0.00017396182],"domain_scores_gemma":[0.99792165,0.00030527049,0.00012343527,0.00028295658,0.0006897732,0.0006769154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003984707,0.0019571474,0.0014774329,0.0037039327,0.0015887326,0.005888048,0.0019459272,0.003042525,0.102080755],"category_scores_gemma":[0.0020726249,0.001988989,0.0010998846,0.0021574209,0.001503079,0.004069011,0.003999389,0.008847363,0.06758316],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026336426,0.00014873497,0.0005947425,0.0006233508,0.00005751655,0.0006278507,0.00014659463,0.0004274956,0.016290678,0.02330225,0.7907842,0.16673319],"study_design_scores_gemma":[0.000026964943,0.000037833393,0.0007571833,0.00023024353,0.000007926462,0.0003473523,0.000023706712,0.0003614687,0.0015773441,0.0029468178,0.9936652,0.000017936472],"about_ca_topic_score_codex":0.0020157269,"about_ca_topic_score_gemma":0.0039549978,"teacher_disagreement_score":0.102080755,"about_ca_system_score_codex":0.0029239268,"about_ca_system_score_gemma":0.0020859672,"threshold_uncertainty_score":0.34149414},"labels":[],"label_agreement":null},{"id":"W2137857595","doi":"10.1074/mcp.r112.026989","title":"Density-dependent Lectin–Glycan Interactions as a Paradigm for Conditional Regulation by Posttranslational Modifications","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Galectins and Cancer Biology","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research","keywords":"Epitope; Glycan; Lectin; Golgi apparatus; Cell biology; Glycobiology; Biology; Receptor; Glycosylation; Chemistry; Biochemistry; Glycoprotein; Genetics; Endoplasmic reticulum; Antigen","score_opus":0.009742289367623832,"score_gpt":0.23540920514309122,"score_spread":0.22566691577546738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137857595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9537389,0.0007891965,0.042340405,0.00031011607,0.000063976295,0.000049246428,0.0002365687,0.00047623407,0.0019952024],"genre_scores_gemma":[0.98650104,0.00048047293,0.010716492,0.00013533981,0.00001649187,0.00005309971,0.0002055905,0.00009955948,0.0017918205],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996865,0.0000549213,0.000023892597,0.00008000671,0.00011028613,0.00004458262],"domain_scores_gemma":[0.9996088,0.000085566804,0.00012348311,0.000081806946,0.000030795676,0.00006969932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033656496,0.00040973522,0.0001987303,0.0004411394,0.00019157556,0.00044635663,0.0007728448,0.00032291334,0.0007907724],"category_scores_gemma":[0.00025576077,0.00029724403,0.00020464403,0.00019698376,0.0008308874,0.00058725575,0.0006876765,0.0010780263,0.00022630162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032170374,0.000009489378,0.00009309765,0.000007797833,0.0000017170586,0.00002086289,0.000007605307,0.000037537302,0.99836177,0.00088412745,0.000017790617,0.00052602077],"study_design_scores_gemma":[0.000016881639,0.00013712421,0.0028905424,0.000004095725,0.00001171957,0.0002419979,0.000019906307,0.0022178022,0.99145037,0.0010999903,0.0018976418,0.0000118768085],"about_ca_topic_score_codex":0.00027748544,"about_ca_topic_score_gemma":0.0005333839,"teacher_disagreement_score":0.0007907724,"about_ca_system_score_codex":0.0004999635,"about_ca_system_score_gemma":0.0001716455,"threshold_uncertainty_score":0.003627479},"labels":[],"label_agreement":null},{"id":"W2137976135","doi":"10.1074/mcp.m300048-mcp200","title":"Mass Spectrometric Characterization of Proteins from the SARS Virus","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Research Manitoba","funders":"National Institute of General Medical Sciences","keywords":"Glycoprotein; Immunogen; Mass spectrometry; Coronavirus; Virus; Time-of-flight mass spectrometry; Molecular biology; Virology; Chemistry; Open reading frame; Biology; Peptide sequence; Gene; Antibody; Medicine; Biochemistry; Coronavirus disease 2019 (COVID-19); Chromatography; Immunology; Monoclonal antibody","score_opus":0.019386304298480372,"score_gpt":0.2659370786488469,"score_spread":0.24655077435036654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137976135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98400235,0.0031605854,0.009023952,0.0002888009,0.00009877705,0.000103114675,0.0014603761,0.00012371024,0.0017382774],"genre_scores_gemma":[0.9546738,0.002459031,0.03411668,0.0004295804,0.0000699516,0.000098626595,0.0054913294,0.00008239288,0.0025785817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983203,0.000022432961,0.000011206361,0.000035466404,0.00007436265,0.000024506442],"domain_scores_gemma":[0.999736,0.000053973894,0.00004398198,0.000012646772,0.00009597289,0.00005749953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026536183,0.00075857603,0.00033397184,0.00084362045,0.00036350483,0.00029467605,0.00028129586,0.00046558416,0.0007641201],"category_scores_gemma":[0.00052270317,0.000120749304,0.00036190145,0.00045229666,0.0001847895,0.0002833026,0.00023138597,0.0005366466,0.00047317817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006072437,0.000027513093,0.0008154053,0.000035827383,0.0000098517685,0.00020299433,0.000038568807,0.00004418597,0.99680674,0.000039306826,0.000069676236,0.001849211],"study_design_scores_gemma":[0.000029247994,0.0005982676,0.05790314,0.000030189642,0.00004794327,0.0043948716,0.00025442953,0.0034729016,0.9263201,0.0001758004,0.006746216,0.00002697079],"about_ca_topic_score_codex":0.00071029086,"about_ca_topic_score_gemma":0.00056913926,"teacher_disagreement_score":0.00084362045,"about_ca_system_score_codex":0.00021551602,"about_ca_system_score_gemma":0.00022079049,"threshold_uncertainty_score":0.0025562644},"labels":[],"label_agreement":null},{"id":"W2138093970","doi":"10.1074/mcp.m800555-mcp200","title":"Finding Chimeras: a Bioinformatics Strategy for Identification of Cross-linked Peptides","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Center for Research Resources; U.S. Public Health Service; National Institutes of Health","keywords":"Context (archaeology); Computational biology; Identification (biology); Computer science; Network topology; Chemistry; Bioinformatics; Biology","score_opus":0.011764420503789052,"score_gpt":0.277743804116598,"score_spread":0.26597938361280893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138093970","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.027986543,0.0002110947,0.93027204,0.00025547502,0.000047544367,0.00025996385,0.0012602769,0.038344353,0.0013626874],"genre_scores_gemma":[0.07246989,0.00020941523,0.91749054,0.00022832207,0.000013800897,0.0005612597,0.0038898054,0.0039721103,0.0011648174],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.998406,0.00044783266,0.00013795802,0.00044441837,0.0004155932,0.00014825104],"domain_scores_gemma":[0.998312,0.0007856675,0.00022947151,0.00025910666,0.00019361806,0.00022022078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037703502,0.0019904873,0.0016655093,0.0023721028,0.0013056067,0.0018847227,0.0026251413,0.0013835015,0.0058795777],"category_scores_gemma":[0.0047222045,0.0010731791,0.0027656,0.0014973354,0.0009397406,0.0020873465,0.0030697072,0.0028877405,0.0027167639],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006961288,0.0014492729,0.020308845,0.0016816205,0.0013333963,0.0041435137,0.0016420909,0.05205746,0.4505734,0.0495244,0.03685184,0.37347293],"study_design_scores_gemma":[0.00035337705,0.00058968476,0.0034178826,0.00011343292,0.0002874734,0.0019556442,0.00032390474,0.7430726,0.17741074,0.024851833,0.04739871,0.0002247026],"about_ca_topic_score_codex":0.0010931216,"about_ca_topic_score_gemma":0.0014023609,"teacher_disagreement_score":0.0058795777,"about_ca_system_score_codex":0.0009034214,"about_ca_system_score_gemma":0.0018087848,"threshold_uncertainty_score":0.01993978},"labels":[],"label_agreement":null},{"id":"W2138368889","doi":"10.1074/mcp.m800079-mcp200","title":"Monitoring Protein-Protein Interactions between the Mammalian Integral Membrane Transporters and PDZ-interacting Partners Using a Modified Split-ubiquitin Membrane Yeast Two-hybrid System","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Metabolism, Diabetes, and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Australian Research Council; Genentech; National Cancer Institute; Ontario Genomics; National Institutes of Health; Ministry of Education, India; Medical Research Council; Ontario Genomics Institute; Genome Canada; National Health and Medical Research Council; Simmons Family Foundation","keywords":"PDZ domain; Integral membrane protein; Two-hybrid screening; Cell biology; Protein–protein interaction; Transmembrane protein; Membrane protein; Chemistry; Biochemistry; Plasma protein binding; Biology; Yeast; Membrane","score_opus":0.027316094401926533,"score_gpt":0.26767647810651823,"score_spread":0.2403603837045917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138368889","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9822234,0.00025893393,0.016563887,0.00004542653,0.00000824131,0.00003058595,0.0003596227,0.00012915797,0.00038077228],"genre_scores_gemma":[0.9751946,0.0003290186,0.021742836,0.000051293508,0.0000046871864,0.00008519565,0.0009504457,0.000038967486,0.0016031339],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996952,0.00005311401,0.00002531132,0.00008884063,0.00010091724,0.00003664302],"domain_scores_gemma":[0.9998323,0.000051699626,0.000041651583,0.000023125473,0.000018678491,0.000032596785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003284906,0.00039557592,0.00049738033,0.00026270628,0.00018540386,0.0005038163,0.00054470834,0.0004260464,0.0006326269],"category_scores_gemma":[0.00017921481,0.0002646072,0.00026026956,0.00023273031,0.00022208641,0.00024209614,0.00038720158,0.00074179744,0.00036750876],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047499158,0.000009668592,0.00014688974,0.0000102326,0.000005794042,0.00001265954,0.000006898664,0.000062068975,0.9994368,0.00003605353,0.0000063170673,0.00021894292],"study_design_scores_gemma":[0.0000059044637,0.000079339254,0.001961168,0.0000010774382,0.00001044977,0.00011932743,0.000015634569,0.0027622832,0.99459654,0.000024049337,0.00041808805,0.0000061586825],"about_ca_topic_score_codex":0.0004622406,"about_ca_topic_score_gemma":0.00061964436,"teacher_disagreement_score":0.0006326269,"about_ca_system_score_codex":0.0004558707,"about_ca_system_score_gemma":0.00011813326,"threshold_uncertainty_score":0.003307581},"labels":[],"label_agreement":null},{"id":"W2139564441","doi":"10.1074/mcp.r400007-mcp200","title":"Mass Spectrometry as a Diagnostic and a Cancer Biomarker Discovery Tool","year":2004,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":631,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Biomarker discovery; Prostate cancer; Proteomics; Breast cancer; Medicine; Cancer biomarkers; Biomarker; Mass spectrometry; Computational biology; Profiling (computer programming); Oncology; Cancer; Bioinformatics; Internal medicine; Computer science; Biology; Chemistry; Chromatography","score_opus":0.014171222099937793,"score_gpt":0.2951488462402526,"score_spread":0.2809776241403148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139564441","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00021382143,0.99345607,0.0015382374,0.0009021027,0.0005239512,0.0000067816677,0.000011771411,0.000024664278,0.0033226486],"genre_scores_gemma":[0.0020615456,0.9892595,0.0030248275,0.0010080363,0.00079721835,0.000016037864,0.000027862785,0.0000064765404,0.0037985148],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991302,0.00015722314,0.000069088484,0.00015840669,0.00044006688,0.00004498508],"domain_scores_gemma":[0.9994435,0.00023683807,0.000058542148,0.00003127785,0.00017057944,0.0000592329],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014156408,0.001381416,0.0017387832,0.004152525,0.0004413503,0.0019092516,0.0013488894,0.0028120219,0.0023102523],"category_scores_gemma":[0.0007404146,0.00054948207,0.0005141772,0.0033129738,0.0016595039,0.0031697073,0.00091464247,0.0026133722,0.005556809],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008256101,0.00013443973,0.0003317189,0.006003315,0.00010393393,0.00057996047,0.00007971765,0.0004986206,0.015440971,0.021947296,0.032717746,0.9220798],"study_design_scores_gemma":[0.000012478232,0.0001281664,0.0005192191,0.0008166114,0.00004128648,0.00299081,0.000058013648,0.00023643205,0.0043956856,0.0073233843,0.9834427,0.00003522402],"about_ca_topic_score_codex":0.00067457225,"about_ca_topic_score_gemma":0.0007646009,"teacher_disagreement_score":0.004152525,"about_ca_system_score_codex":0.0011700088,"about_ca_system_score_gemma":0.0010122297,"threshold_uncertainty_score":0.008489072},"labels":[],"label_agreement":null},{"id":"W2139574601","doi":"10.1074/mcp.m100015-mcp200","title":"2D Differential In-gel Electrophoresis for the Identification of Esophageal Scans Cell Cancer-specific Protein Markers","year":2002,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":388,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chemistry; Gel electrophoresis; Molecular biology; Proteomics; Cancer cell; Difference gel electrophoresis; Two-dimensional gel electrophoresis; Laser capture microdissection; Cancer; Biology; Biochemistry; Gene expression; Gene","score_opus":0.008907768747219987,"score_gpt":0.22393168475809608,"score_spread":0.2150239160108761,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139574601","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3602451,0.014072932,0.6109353,0.0007597818,0.00057613954,0.0005883231,0.004551907,0.0024481716,0.0058223614],"genre_scores_gemma":[0.37073067,0.013908762,0.5967222,0.0006320132,0.00013094606,0.001492983,0.0066891876,0.00052626175,0.009167054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999482,0.00010372904,0.000046310844,0.00015803718,0.00016038574,0.000049513714],"domain_scores_gemma":[0.9997702,0.00007621925,0.000041404135,0.000037214875,0.000049975366,0.000025054676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007346653,0.0008252473,0.0005908362,0.0012909479,0.00040824525,0.0008179484,0.0005622486,0.00065785676,0.0013886569],"category_scores_gemma":[0.00043676238,0.00042140213,0.00044823613,0.00092642184,0.00031635276,0.00042567574,0.00047087783,0.00096383196,0.0011430053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032398246,0.000013727101,0.00012214942,0.000089118425,0.0000063899747,0.00003361644,0.000024526458,0.000049122693,0.9966049,0.00011395789,0.00010536789,0.0028047413],"study_design_scores_gemma":[0.00001709511,0.00012837397,0.007509456,0.000022907547,0.00004376293,0.0008099623,0.00005923926,0.007282667,0.9706641,0.00029899576,0.013133207,0.00003017951],"about_ca_topic_score_codex":0.0003912909,"about_ca_topic_score_gemma":0.0015263472,"teacher_disagreement_score":0.0013886569,"about_ca_system_score_codex":0.0004354819,"about_ca_system_score_gemma":0.00025436754,"threshold_uncertainty_score":0.004645586},"labels":[],"label_agreement":null},{"id":"W2139718640","doi":"10.1074/mcp.m112.023887","title":"Quantitative Proteomics Reveals That Enzymes of the Ketogenic Pathway Are Associated with Prostate Cancer Progression","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"National Institutes of Health; University Health Network; National Cancer Institute; University of Washington; Lucas Foundation","keywords":"Prostate cancer; Proteomics; Enzyme; Computational biology; Cancer; Bioinformatics; Cancer research; Biology; Medicine; Internal medicine; Biochemistry; Gene","score_opus":0.012473640372209592,"score_gpt":0.2416402299933884,"score_spread":0.2291665896211788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139718640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9795035,0.008311189,0.007801775,0.00025082173,0.000051338724,0.000031619402,0.0022033877,0.00017681609,0.0016695005],"genre_scores_gemma":[0.9881402,0.0026387807,0.0052357446,0.00017965095,0.000033857094,0.000033185144,0.0018949449,0.000022583692,0.0018210739],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997787,0.000022467006,0.00001294574,0.00006273769,0.00008645813,0.000036708905],"domain_scores_gemma":[0.9998192,0.000024476816,0.00006756287,0.000010460116,0.000049191724,0.000029044826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022863418,0.00036432812,0.00025749454,0.00090826984,0.00022587246,0.00051723275,0.00013157794,0.00027250228,0.0008073755],"category_scores_gemma":[0.00023177103,0.00017947081,0.00030694605,0.0010029098,0.00022847879,0.00018670919,0.00020090779,0.00041753222,0.0002776458],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003081306,0.000028856184,0.013032932,0.00015256743,0.000066009015,0.00010756307,0.00004859881,0.000112817615,0.98039824,0.00009627309,0.0001939765,0.0054539614],"study_design_scores_gemma":[0.0000162707,0.0003650043,0.65286905,0.000027545206,0.00015726288,0.0018125643,0.00023453953,0.0023460318,0.33682427,0.00041572293,0.0048970752,0.00003462886],"about_ca_topic_score_codex":0.0011387988,"about_ca_topic_score_gemma":0.0012460812,"teacher_disagreement_score":0.0011387988,"about_ca_system_score_codex":0.000249071,"about_ca_system_score_gemma":0.00022097433,"threshold_uncertainty_score":0.0027009249},"labels":[],"label_agreement":null},{"id":"W2139775161","doi":"10.1074/mcp.o111.013706","title":"A Human Ubiquitin Conjugating Enzyme (E2)-HECT E3 Ligase Structure-function Screen","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":131,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research; York University","funders":"National Cancer Institute; Canadian Institutes of Health Research; National Center for Research Resources; National Institute of General Medical Sciences; Wellcome Trust","keywords":"Ubiquitin ligase; Ubiquitin; DNA ligase; Chemistry; Function (biology); Enzyme; Biochemistry; Ubiquitin-Protein Ligases; Protein structure; Structure function; Cell biology; Computational biology; Biophysics; Biology; Gene; Physics","score_opus":0.011468499712640525,"score_gpt":0.23506511105028155,"score_spread":0.22359661133764103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139775161","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9776079,0.0014862434,0.010579486,0.00016620345,0.000033406708,0.00039832224,0.0049393508,0.00049923436,0.0042897826],"genre_scores_gemma":[0.97156763,0.00069661665,0.012666518,0.00024060976,0.000008360316,0.00015975554,0.007889716,0.00008040762,0.0066904733],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995635,0.000080889375,0.000035796744,0.00009478361,0.00016937792,0.000055781235],"domain_scores_gemma":[0.99985635,0.00003206157,0.000018048262,0.000028259366,0.00003422506,0.0000310624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035039152,0.00064578187,0.00046987075,0.00049813616,0.00034234568,0.00031022815,0.00037804316,0.00041423002,0.0017542152],"category_scores_gemma":[0.00021811185,0.00020138093,0.00059226947,0.00038620198,0.00013877751,0.00012018735,0.00032095914,0.0003689924,0.00070572936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022687406,0.00026458045,0.0018661537,0.00005461213,0.00007297694,0.00039220983,0.000013418526,0.00054376165,0.9912889,0.00014240007,0.0004202806,0.004713761],"study_design_scores_gemma":[0.00011858556,0.0012274408,0.016826205,0.000006482512,0.00012546124,0.0023677933,0.000028380415,0.0035507423,0.9673303,0.000106381354,0.008297704,0.000014562387],"about_ca_topic_score_codex":0.00131425,"about_ca_topic_score_gemma":0.0028933932,"teacher_disagreement_score":0.0017542152,"about_ca_system_score_codex":0.0005039755,"about_ca_system_score_gemma":0.00040455573,"threshold_uncertainty_score":0.0058684945},"labels":[],"label_agreement":null},{"id":"W2139840449","doi":"10.1074/mcp.r400009-mcp200","title":"Interaction Networks of the Molecular Machines That Decode, Replicate, and Maintain the Integrity of the Human Genome","year":2004,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Clinical Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Genome Canada","keywords":"Biology; DNA replication; Computational biology; Genome; Genetics; Gene; Cell biology","score_opus":0.013627013210911238,"score_gpt":0.26235148263384084,"score_spread":0.2487244694229296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139840449","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00025845342,0.9927817,0.001758692,0.00033413677,0.000264389,0.000012972951,0.00004841269,0.000035594516,0.004505694],"genre_scores_gemma":[0.0022650682,0.99236894,0.0014787365,0.0001915833,0.00024775727,0.000025361149,0.00009664516,0.000005694334,0.00332016],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99974793,0.00004809737,0.000022009304,0.00006866102,0.00009118307,0.000022121381],"domain_scores_gemma":[0.9998022,0.00006670529,0.000038193568,0.00001255335,0.00005702157,0.000023498753],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004388922,0.0013080549,0.0017276182,0.0027668353,0.00052494096,0.0019933395,0.0016041212,0.0016809369,0.0032071597],"category_scores_gemma":[0.0004937471,0.00043358665,0.00032793081,0.0033133563,0.0014893437,0.0027401873,0.0007490045,0.001130445,0.0042894236],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059010225,0.000038142545,0.00023790354,0.008814474,0.0000749033,0.00037375418,0.00013470835,0.0014771358,0.0051699523,0.027473625,0.028638214,0.92750823],"study_design_scores_gemma":[0.0000071055183,0.000023157303,0.000506566,0.0008144708,0.00003248761,0.0012224533,0.000060516835,0.00017639282,0.00094367296,0.008166973,0.9880277,0.000018539822],"about_ca_topic_score_codex":0.001509254,"about_ca_topic_score_gemma":0.0016783614,"teacher_disagreement_score":0.0032071597,"about_ca_system_score_codex":0.001363071,"about_ca_system_score_gemma":0.0009848314,"threshold_uncertainty_score":0.010728955},"labels":[],"label_agreement":null},{"id":"W2140145660","doi":"10.1074/mcp.m111.015214","title":"Quantitative Analysis of Energy Metabolic Pathways in MCF-7 Breast Cancer Cells by Selected Reaction Monitoring Assay","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cancer, Hypoxia, and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Pentose phosphate pathway; Metabolic pathway; Proteomics; Glycolysis; Cancer cell; Citric acid cycle; MCF-7; Quantitative proteomics; Biochemistry; Biology; Oxidative phosphorylation; Cell growth; Chemistry; Metabolic flux analysis; Enzyme; Metabolism; Cancer; Human breast","score_opus":0.009522706791986345,"score_gpt":0.23801189572993647,"score_spread":0.22848918893795012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140145660","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47739622,0.0071389065,0.49699727,0.0003949333,0.0002887157,0.0010609444,0.0067901956,0.00424518,0.0056876875],"genre_scores_gemma":[0.33833456,0.008100512,0.62944496,0.0003495422,0.00008439,0.004599815,0.010369091,0.00046496527,0.008252206],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823534,0.00040718456,0.00013438052,0.00037330948,0.0007065015,0.00014333313],"domain_scores_gemma":[0.999509,0.00012489215,0.00009543175,0.00006385519,0.00016860737,0.000038207716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012356214,0.0014207675,0.0010818373,0.0014322249,0.00046767184,0.00057116215,0.0007728084,0.0007232298,0.0010305714],"category_scores_gemma":[0.00063830597,0.0004680148,0.00067578873,0.0019604473,0.00038567276,0.00037467378,0.00047143834,0.001149703,0.0009513399],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097799384,0.000040085295,0.00029948165,0.00009957815,0.000019787178,0.000033099575,0.000047229507,0.00020074712,0.99620724,0.00009609583,0.00010718362,0.0027516114],"study_design_scores_gemma":[0.000012222693,0.0001678995,0.0023882014,0.000011678979,0.000045263812,0.0001062968,0.000026211104,0.0039652544,0.99091256,0.000077723475,0.0022685986,0.000018233584],"about_ca_topic_score_codex":0.0008229755,"about_ca_topic_score_gemma":0.0014616792,"teacher_disagreement_score":0.0014322249,"about_ca_system_score_codex":0.00059826067,"about_ca_system_score_gemma":0.00042196453,"threshold_uncertainty_score":0.006534636},"labels":[],"label_agreement":null},{"id":"W2141491800","doi":"10.1074/mcp.m000116-mcp201","title":"Integrated Phosphoproteomics Analysis of a Signaling Network Governing Nutrient Response and Peroxisome Induction","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Université du Luxembourg","keywords":"Phosphoproteomics; Cell biology; Peroxisome; Chemistry; Computational biology; Signal transduction; Biology; Receptor; Biochemistry; Kinase; Protein kinase A","score_opus":0.004966597457765518,"score_gpt":0.20860914876739925,"score_spread":0.20364255130963374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141491800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98645055,0.00033945436,0.011568265,0.000027504224,0.0000030420558,0.000022187249,0.0010738805,0.000085424894,0.00042960458],"genre_scores_gemma":[0.9836283,0.00044634574,0.012940915,0.000025840505,0.0000042492748,0.000046538247,0.0024461031,0.000023631941,0.00043818878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999936,0.000006704303,0.000003216505,0.000024564519,0.000019134774,0.000010314542],"domain_scores_gemma":[0.99991524,0.000016631115,0.000025944071,0.000008597751,0.000016758164,0.000016706941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012253266,0.00025050086,0.00027105227,0.00058578054,0.00016251962,0.00025178815,0.00020707537,0.00016426218,0.0005208128],"category_scores_gemma":[0.00016423901,0.00015945498,0.000244261,0.0007366349,0.00017649101,0.00031485254,0.00020183323,0.00023344927,0.00013088345],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001656369,0.000012668145,0.0013557932,0.00004573832,0.000019878196,0.000041028594,0.000014699539,0.0015435735,0.9947313,0.00015602971,0.000025854208,0.0018877995],"study_design_scores_gemma":[0.000044992838,0.0003038074,0.2337291,0.000014804526,0.00016674864,0.0005284051,0.00015256311,0.07489075,0.68611264,0.002145108,0.0018787638,0.00003231827],"about_ca_topic_score_codex":0.0009559723,"about_ca_topic_score_gemma":0.0014577084,"teacher_disagreement_score":0.0009559723,"about_ca_system_score_codex":0.0002802406,"about_ca_system_score_gemma":0.00017777598,"threshold_uncertainty_score":0.0020333529},"labels":[],"label_agreement":null},{"id":"W2141627904","doi":"10.1074/mcp.m800446-mcp200","title":"SISCAPA Peptide Enrichment on Magnetic Beads Using an In-line Bead Trap Device","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microfluidic and Bio-sensing Technologies","field":"Engineering","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Victoria","funders":"National Cancer Institute; National Institutes of Health; Canary Foundation","keywords":"Bead; Chemistry; Chromatography; Magnetic bead; Peptide; Antibody; Mass spectrometry; Materials science; Biochemistry","score_opus":0.01771519057619125,"score_gpt":0.2262839086733042,"score_spread":0.20856871809711294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141627904","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.33407578,0.0042750794,0.6351889,0.0005652614,0.00053691637,0.0018779994,0.004672155,0.007820756,0.0109871365],"genre_scores_gemma":[0.37667477,0.0034305055,0.5825257,0.00096421945,0.00022781438,0.0031669224,0.010160856,0.0005430706,0.022306278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986016,0.00025400642,0.00010352941,0.00030467898,0.0005951005,0.00014105575],"domain_scores_gemma":[0.99956065,0.000115504496,0.000069774316,0.000054872715,0.00013155198,0.00006752124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009073655,0.00091531425,0.00090411893,0.0008319546,0.00040979337,0.0008908962,0.0010202398,0.00082952797,0.0017510827],"category_scores_gemma":[0.00077099557,0.0006260999,0.0005986836,0.0005250413,0.000332985,0.00034949908,0.00074713636,0.0012794415,0.0031463262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012049699,0.00005183366,0.00017240425,0.000104192775,0.00002462262,0.000045054658,0.000017479693,0.00017698487,0.99275464,0.0001601159,0.0006175632,0.005754665],"study_design_scores_gemma":[0.000034512548,0.00021121568,0.0011342203,0.000013338068,0.000032054024,0.00022750841,0.000009976061,0.00603683,0.9818875,0.000064037995,0.010320734,0.000028000391],"about_ca_topic_score_codex":0.00036809646,"about_ca_topic_score_gemma":0.0006741738,"teacher_disagreement_score":0.0017510827,"about_ca_system_score_codex":0.00041625218,"about_ca_system_score_gemma":0.00050889037,"threshold_uncertainty_score":0.005858004},"labels":[],"label_agreement":null},{"id":"W2142522237","doi":"10.1074/mcp.m111.012526","title":"Translational Analysis of Mouse and Human Placental Protein and mRNA Reveals Distinct Molecular Pathologies in Human Preeclampsia","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Pregnancy and preeclampsia studies","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto; University Health Network; Ontario Institute for Cancer Research; Heart and Stroke Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Trophoblast; Preeclampsia; Biology; Placenta; Proteomics; Microarray analysis techniques; Microarray; Bioinformatics; Cell biology; Fetus; Gene expression; Gene; Genetics; Pregnancy","score_opus":0.021587890440334108,"score_gpt":0.2514302507683789,"score_spread":0.22984236032804478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142522237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894593,0.0024769797,0.005143356,0.00014482265,0.00003914116,0.000045803532,0.0016430822,0.00009347894,0.0009541784],"genre_scores_gemma":[0.975663,0.0035945007,0.010649077,0.00022330589,0.00003631333,0.0001587089,0.0069458615,0.000067225934,0.002661961],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99977046,0.000026136066,0.000028693848,0.00008037779,0.000055319022,0.000038979444],"domain_scores_gemma":[0.9998802,0.000029690673,0.000028101987,0.00002679611,0.000014463952,0.000020765518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030515104,0.00025849073,0.00024681198,0.0006590582,0.0002084454,0.00034487227,0.00020698771,0.00024954756,0.0010378151],"category_scores_gemma":[0.00029162323,0.00020634336,0.0004258095,0.0005431134,0.00023800987,0.00016109679,0.0003129886,0.0003558229,0.00043384527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002650359,0.000035050478,0.0023965864,0.00006438456,0.00002145658,0.00014567531,0.00003382229,0.00005834478,0.9940773,0.00008704032,0.00006954418,0.002745642],"study_design_scores_gemma":[0.000089500034,0.0012628513,0.27273467,0.000036270772,0.00022597551,0.0057765986,0.00022587595,0.0018308478,0.7044718,0.00047412844,0.012847436,0.000024005501],"about_ca_topic_score_codex":0.00048909197,"about_ca_topic_score_gemma":0.0006379748,"teacher_disagreement_score":0.0010378151,"about_ca_system_score_codex":0.00020536728,"about_ca_system_score_gemma":0.00024181332,"threshold_uncertainty_score":0.0034717917},"labels":[],"label_agreement":null},{"id":"W2143515440","doi":"10.1074/mcp.m111.015099","title":"Cells Lacking β-Actin are Genetically Reprogrammed and Maintain Conditional Migratory Capacity*","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular Mechanics and Interactions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Cell biology; Actin; Biology; Actin remodeling; Myosin; Cell migration; Profilin; Conditional gene knockout; Actin remodeling of neurons; Gene knockout; Actin cytoskeleton; Phenotype; Cell; Cytoskeleton; Genetics; Gene","score_opus":0.011953057127180373,"score_gpt":0.2208896857274404,"score_spread":0.20893662860026002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143515440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97153664,0.0012171448,0.017072719,0.00020208741,0.00016334227,0.00017515279,0.003015109,0.0008546851,0.005763183],"genre_scores_gemma":[0.96121943,0.0010878105,0.011150095,0.00013309595,0.000024130863,0.0002762679,0.004127503,0.0005357872,0.02144584],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999622,0.000031809555,0.000057066507,0.00009297217,0.00012259156,0.00007350525],"domain_scores_gemma":[0.99954295,0.000057991332,0.00015263374,0.000106330175,0.000033951277,0.000106186075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022512015,0.0006596762,0.00038160008,0.00040493094,0.00020386561,0.00042728303,0.00044115493,0.0004338202,0.0022782397],"category_scores_gemma":[0.00015916865,0.00036633678,0.00035552977,0.000270097,0.00040711334,0.00019725028,0.00039219318,0.0010885188,0.0026106504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031677086,0.000017730625,0.000072684044,0.00001283197,0.0000024277929,0.000046310677,0.000010993929,0.00003395514,0.99900097,0.00015742739,0.00004023668,0.00057274936],"study_design_scores_gemma":[0.000019133071,0.00013290183,0.0028775486,0.000010687678,0.000014291958,0.00033417586,0.000036117144,0.0011369729,0.98782736,0.0000891184,0.007511995,0.00000985526],"about_ca_topic_score_codex":0.00032587172,"about_ca_topic_score_gemma":0.0004995079,"teacher_disagreement_score":0.0022782397,"about_ca_system_score_codex":0.00024156123,"about_ca_system_score_gemma":0.00016180804,"threshold_uncertainty_score":0.007621467},"labels":[],"label_agreement":null},{"id":"W2143534453","doi":"10.1074/mcp.m600465-mcp200","title":"Proteomics Analysis of Conditioned Media from Three Breast Cancer Cell Lines","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Proteomics; Extracellular; Chemistry; Quantitative proteomics; Cell culture; Molecular biology; Biology; Biochemistry; Gene","score_opus":0.007914282021153575,"score_gpt":0.24771291998393208,"score_spread":0.2397986379627785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143534453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9474351,0.00622336,0.02734496,0.0004983847,0.00036415376,0.0004602672,0.011323814,0.0006648223,0.0056851762],"genre_scores_gemma":[0.8432362,0.008767816,0.08162361,0.0009853903,0.0002672563,0.0010750501,0.049996965,0.00021631333,0.013831318],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960047,0.000042415482,0.000046497615,0.00006652172,0.00018218724,0.00006195175],"domain_scores_gemma":[0.99975735,0.000061273015,0.000023071161,0.0000279319,0.000100045814,0.000030375648],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037327607,0.000838883,0.00058942055,0.00054456404,0.00038779117,0.00052518846,0.00031305454,0.00027576298,0.00094304763],"category_scores_gemma":[0.00028287992,0.00015849424,0.0004527123,0.0006794041,0.00021336834,0.00019020392,0.00034906852,0.00062619627,0.0006511339],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000084201485,0.000025799673,0.00040626765,0.00006324764,0.000011838046,0.000052099924,0.00002319004,0.000026651003,0.99764305,0.000027208076,0.000086356915,0.0015500536],"study_design_scores_gemma":[0.000018861228,0.00020918682,0.012783159,0.0000142636345,0.00008685966,0.0004951081,0.00007398179,0.0008534936,0.9801231,0.00003607889,0.0052882517,0.00001782305],"about_ca_topic_score_codex":0.0010925678,"about_ca_topic_score_gemma":0.0015742884,"teacher_disagreement_score":0.0010925678,"about_ca_system_score_codex":0.000302494,"about_ca_system_score_gemma":0.00041533005,"threshold_uncertainty_score":0.0031547546},"labels":[],"label_agreement":null},{"id":"W2144627189","doi":"10.1074/mcp.m700501-mcp200","title":"Trafficking and Postsecretory Events Responsible for the Formation of Secreted Human Salivary Peptides","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Salivary Gland Disorders and Functions","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Submandibular gland; Chemistry; Saliva; Secretion; Salivary gland; Sulfation; Biochemistry; Granule (geology); Threonine; Gene isoform; Parotid gland; Phosphorylation; Molecular biology; Biology; Endocrinology; Serine; Pathology; Gene","score_opus":0.026191809152649986,"score_gpt":0.2533932372407048,"score_spread":0.2272014280880548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144627189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99684143,0.0013230683,0.0011708804,0.00003862341,0.00001101228,0.000018170662,0.00013887367,0.000017146034,0.00044080644],"genre_scores_gemma":[0.9955243,0.00090755214,0.0017695548,0.000048689468,0.000014810359,0.000026890162,0.00038672696,0.000009705945,0.0013117329],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999386,0.0000085866095,0.0000047133735,0.000018015917,0.000011058333,0.000018985278],"domain_scores_gemma":[0.9999393,0.000011620993,0.000015740756,0.0000056138992,0.0000112837515,0.000016411484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009990001,0.00017616435,0.00015490125,0.00012341776,0.000115515155,0.00022687955,0.000095287345,0.0002454048,0.0008277336],"category_scores_gemma":[0.00012353985,0.00011542563,0.00029901738,0.000093918854,0.00013048269,0.00024699705,0.00015165615,0.00024517585,0.00043669142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021567997,0.000008824545,0.0010734148,0.000036538586,0.000004775277,0.00024781635,0.000047796893,0.000024205616,0.99669194,0.00007109658,0.000028657674,0.0015492488],"study_design_scores_gemma":[0.000029549265,0.00035864787,0.12434174,0.00002077259,0.000036466452,0.0022142061,0.00033474705,0.0018833347,0.8673559,0.00019764273,0.0032153635,0.000011653979],"about_ca_topic_score_codex":0.00036100298,"about_ca_topic_score_gemma":0.0002666123,"teacher_disagreement_score":0.0008277336,"about_ca_system_score_codex":0.00015625001,"about_ca_system_score_gemma":0.00016295597,"threshold_uncertainty_score":0.002769053},"labels":[],"label_agreement":null},{"id":"W2145262910","doi":"10.1074/mcp.m400094-mcp200","title":"Mitochondrial Proteomic Analysis of a Cell Line Model of Familial Amyotrophic Lateral Sclerosis","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Amyotrophic Lateral Sclerosis Research","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Occupational Cancer Research Centre; University of Toronto","funders":"National Institute of Environmental Health Sciences; National Institute of Neurological Disorders and Stroke","keywords":"SOD1; Mitochondrion; Biology; Cell biology; Amyotrophic lateral sclerosis; Programmed cell death; Apoptosis; Molecular biology; Proteome; Superoxide dismutase; Biochemistry; Oxidative stress; Pathology; Medicine","score_opus":0.026271922447513366,"score_gpt":0.25304020188853144,"score_spread":0.22676827944101807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145262910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904739,0.0010759891,0.004998916,0.00014380307,0.00008267482,0.000058125635,0.0018556901,0.000098575634,0.0012122479],"genre_scores_gemma":[0.97415346,0.0017162341,0.012574656,0.0001237834,0.000021401389,0.000121971054,0.006757371,0.00004179166,0.0044892575],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987626,0.000014573709,0.0000118427615,0.000031930966,0.000047248777,0.000018270744],"domain_scores_gemma":[0.9998981,0.00001761716,0.000019893718,0.000013610423,0.000027567297,0.000023228718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011522901,0.00036706094,0.0002994961,0.00034567394,0.00016940269,0.00019428521,0.00021354054,0.00028686313,0.00062891137],"category_scores_gemma":[0.00010242694,0.00008979289,0.00027260077,0.00031170185,0.00012422074,0.00013514615,0.0001470419,0.00041464667,0.00035898158],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003794558,0.000011583182,0.00005854314,0.000010231456,0.000004007628,0.000038841317,0.000006618492,0.00001281034,0.99963486,0.000015276011,0.000012743396,0.00015652426],"study_design_scores_gemma":[0.000024720968,0.00055873254,0.013611973,0.000008149794,0.000053553293,0.00082164793,0.000086727094,0.0023033721,0.97972345,0.000082754945,0.0027125312,0.0000121545],"about_ca_topic_score_codex":0.0006381983,"about_ca_topic_score_gemma":0.00060618174,"teacher_disagreement_score":0.0006381983,"about_ca_system_score_codex":0.00019598521,"about_ca_system_score_gemma":0.00014280692,"threshold_uncertainty_score":0.0021039248},"labels":[],"label_agreement":null},{"id":"W2145289446","doi":"10.1074/mcp.m500043-mcp200","title":"Non-stoichiometric Relationship between Clathrin Heavy and Light Chains Revealed by Quantitative Comparative Proteomics of Clathrin-coated Vesicles from Brain and Liver","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Neurological Institute and Hospital; McGill University","funders":"Canadian Institutes of Health Research; Killam Trusts; Genome Canada; McGill University","keywords":"Clathrin; Vesicle; Proteomics; Clathrin adaptor proteins; Cell biology; Signal transducing adaptor protein; Immunoglobulin light chain; Chemistry; Biology; Endocytic cycle; Biochemistry; Endocytosis; Signal transduction; Membrane; Receptor","score_opus":0.020408349477718295,"score_gpt":0.25073362753247835,"score_spread":0.23032527805476005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145289446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98585016,0.0027327328,0.0095192315,0.000080239886,0.000016056321,0.000027137623,0.000518672,0.000070874696,0.0011847332],"genre_scores_gemma":[0.9863209,0.0014512362,0.009713497,0.00008095877,0.000014026005,0.00006740957,0.0011582668,0.00005384373,0.0011399518],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99967134,0.000032340373,0.00002389064,0.00007214273,0.00013319984,0.00006713932],"domain_scores_gemma":[0.9997002,0.0000594985,0.00008271309,0.000030607407,0.000084316714,0.00004260837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034077954,0.000404124,0.00025354335,0.00069385074,0.00022690464,0.00047971954,0.0002848526,0.00023781456,0.00045244285],"category_scores_gemma":[0.00040725293,0.00021524701,0.00024763605,0.00031045004,0.00032354103,0.00032102526,0.000327554,0.000345818,0.00017715344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008217069,0.000005035687,0.00071019726,0.00004024159,0.000012772643,0.000025363526,0.000017615761,0.000030298263,0.9979087,0.000084366846,0.000010190466,0.001073047],"study_design_scores_gemma":[0.000013212543,0.0001730316,0.05890071,0.0000179134,0.000066261724,0.0008049108,0.00010367336,0.0021795875,0.93613863,0.00025277425,0.0013321874,0.000017121454],"about_ca_topic_score_codex":0.0014117413,"about_ca_topic_score_gemma":0.0016278148,"teacher_disagreement_score":0.0014117413,"about_ca_system_score_codex":0.00041265256,"about_ca_system_score_gemma":0.00046398188,"threshold_uncertainty_score":0.0029940605},"labels":[],"label_agreement":null},{"id":"W2145700839","doi":"10.1074/mcp.m111.011460","title":"Antibody Colocalization Microarray: A Scalable Technology for Multiplex Protein Analysis in Complex Samples","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Biosensing Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Occupational Cancer Research Centre; McGill University; McGill University and Génome Québec Innovation Centre","funders":"Canadian Institutes of Health Research; Genome Canada; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Multiplex; Antibody microarray; Microarray; DNA microarray; Immunoassay; Antibody; Molecular biology; Protein microarray; Computational biology; Biology; Chemistry; Immunology; Gene; Bioinformatics; Gene expression; Genetics","score_opus":0.02324722604916394,"score_gpt":0.2755037855425789,"score_spread":0.25225655949341497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145700839","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.068501346,0.004056863,0.9181444,0.0006367607,0.00030325024,0.00036049206,0.000986112,0.004582599,0.0024281174],"genre_scores_gemma":[0.24195544,0.0034227767,0.74738365,0.0005682712,0.00020975045,0.0013757149,0.0012330818,0.00019337164,0.0036578968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99816906,0.00035639972,0.00007548764,0.00051529333,0.000765061,0.00011862539],"domain_scores_gemma":[0.99922836,0.00031438316,0.00011449992,0.00013944923,0.00014097437,0.00006239],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001519996,0.0009584516,0.0010545951,0.0010491348,0.00039499224,0.0008655657,0.0012599822,0.0009499993,0.0016286791],"category_scores_gemma":[0.0009294434,0.000710879,0.0005499031,0.0007226322,0.00064914115,0.0011141786,0.0011225936,0.0012286538,0.0010711419],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055322707,0.000032498236,0.0002935166,0.00015220605,0.000030033232,0.000050491464,0.000028666193,0.00056463643,0.9816119,0.00091858977,0.000715598,0.015546471],"study_design_scores_gemma":[0.0000165632,0.0002595877,0.0014302235,0.00001479991,0.000034870376,0.0002752917,0.000021109248,0.01644149,0.9703582,0.0007817316,0.010321982,0.000044191114],"about_ca_topic_score_codex":0.0003582689,"about_ca_topic_score_gemma":0.00066321745,"teacher_disagreement_score":0.0016286791,"about_ca_system_score_codex":0.0006735666,"about_ca_system_score_gemma":0.00047181212,"threshold_uncertainty_score":0.00803858},"labels":[],"label_agreement":null},{"id":"W2145741165","doi":"10.1074/mcp.m113.033340","title":"Discovery of Novel Disease-specific and Membrane-associated Candidate Markers in a Mouse Model of Multiple Sclerosis","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Cancer Institute","keywords":"Experimental autoimmune encephalomyelitis; Multiple sclerosis; Peripheral blood mononuclear cell; Proteomics; Immune system; Encephalomyelitis; Proteome; Biology; Demyelinating disease; Autoimmune disease; Immunology; Pathology; Antibody; Medicine; Bioinformatics; Biochemistry; In vitro","score_opus":0.016531997562080344,"score_gpt":0.18361124797204956,"score_spread":0.1670792504099692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145741165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.984835,0.0028289186,0.007483413,0.0002811171,0.000054718836,0.000075184464,0.0037056464,0.00028627616,0.00044978928],"genre_scores_gemma":[0.96336204,0.00485232,0.020005642,0.00027058274,0.00003683912,0.00029237138,0.008216772,0.00008650472,0.0028769397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99973565,0.000023291399,0.00003073069,0.00007907336,0.00009059394,0.000040703442],"domain_scores_gemma":[0.99975115,0.000024734929,0.00009514078,0.000018725077,0.000038833616,0.00007148149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002913209,0.00061602966,0.0006794267,0.0010752457,0.00020013918,0.00047024916,0.00026865723,0.0005440105,0.00066169054],"category_scores_gemma":[0.00023903986,0.00020725137,0.0004582668,0.0007769009,0.0002568061,0.00027228362,0.0002137746,0.00090935704,0.00037953793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019069613,0.000046630103,0.0004841985,0.000051055442,0.00001985654,0.00007428353,0.000011135461,0.000065996974,0.99759454,0.000040721916,0.000062539526,0.0013583368],"study_design_scores_gemma":[0.00012249146,0.0020527057,0.051330328,0.00006928408,0.0002989074,0.0015808779,0.00009666805,0.0040590316,0.93188554,0.00028049242,0.008193021,0.00003061787],"about_ca_topic_score_codex":0.00037885056,"about_ca_topic_score_gemma":0.0007432137,"teacher_disagreement_score":0.0010752457,"about_ca_system_score_codex":0.00030624366,"about_ca_system_score_gemma":0.00027332111,"threshold_uncertainty_score":0.0022220016},"labels":[],"label_agreement":null},{"id":"W2146065651","doi":"10.1074/mcp.m111.007765","title":"Alterations in Glycopeptides Associated with Herceptin Treatment of Human Breast Carcinoma MCF-7 and T-Lymphoblastoid Cells","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; National Research Council Institute for Biodiagnostics; University of Manitoba","funders":"Canadian Breast Cancer Research Alliance; University of Manitoba; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Breast Cancer Alliance","keywords":"Antibody; Cancer research; Monoclonal antibody; Lipofectamine; Cancer; Cancer cell; Chemistry; Docetaxel; Molecular biology; Biology; Medicine; Immunology; Internal medicine; Biochemistry; Recombinant DNA","score_opus":0.017004347474020676,"score_gpt":0.22996673551625896,"score_spread":0.21296238804223827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146065651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960396,0.0010473233,0.000886813,0.000043112694,0.000016626562,0.000020204336,0.00061411655,0.000019948582,0.0013121428],"genre_scores_gemma":[0.993501,0.001058348,0.0016752764,0.000057897134,0.000006093968,0.000051053226,0.0013613071,0.000012282093,0.002276786],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999149,0.000016556603,0.0000061211786,0.000014096815,0.000027732383,0.000020567764],"domain_scores_gemma":[0.999954,0.0000074889394,0.000014381486,0.0000050390204,0.000010267932,0.000008815304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008647161,0.00027793183,0.00017867444,0.00017297946,0.00009019632,0.00017075618,0.000094635085,0.00022634759,0.00048056262],"category_scores_gemma":[0.00012063147,0.000109297434,0.00020065163,0.0002744387,0.0000925049,0.00011534223,0.00010108414,0.00029459066,0.00015783924],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009387061,0.00000824449,0.00016344397,0.000014141923,0.000003953348,0.000054156655,0.000016315658,0.000035738776,0.9991504,0.000021611724,0.000011754641,0.00042640755],"study_design_scores_gemma":[0.000010559448,0.0002637557,0.027726864,0.0000057925263,0.000023363393,0.0003709187,0.00006774439,0.0006908142,0.9691306,0.000035308465,0.0016663127,0.0000080621385],"about_ca_topic_score_codex":0.0012531357,"about_ca_topic_score_gemma":0.00091262936,"teacher_disagreement_score":0.0012531357,"about_ca_system_score_codex":0.00020206584,"about_ca_system_score_gemma":0.00010874023,"threshold_uncertainty_score":0.002491653},"labels":[],"label_agreement":null},{"id":"W2146453026","doi":"10.1074/mcp.m110.004457","title":"The Plk1-dependent Phosphoproteome of the Early Mitotic Spindle","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":254,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Max-Planck-Gesellschaft; Chinese Academy of Sciences; Canadian Institutes of Health Research; European Commission","keywords":"PLK1; Mitosis; Cell biology; Computational biology; Chemistry; Biology; Computer science; Cell cycle; Biochemistry; Cell","score_opus":0.002896082403911682,"score_gpt":0.18757654546560704,"score_spread":0.18468046306169536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146453026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925404,0.0025588076,0.003145701,0.00007953251,0.0000087360395,0.000009795497,0.00081856234,0.0000429471,0.00079551584],"genre_scores_gemma":[0.98941517,0.002681646,0.003711322,0.000076771845,0.00001573305,0.000017144203,0.0020522233,0.00002577806,0.0020042516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999621,0.0000036566028,0.0000022206439,0.000015961425,0.000009614187,0.000006333831],"domain_scores_gemma":[0.9999492,0.000009829203,0.000017245937,0.0000050240114,0.000008081081,0.000010533839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094476396,0.0002668239,0.00015308024,0.00032751716,0.00015005143,0.00032020852,0.000109812674,0.00016707473,0.0009699168],"category_scores_gemma":[0.00011761049,0.00014621837,0.00015211177,0.0001786707,0.00013136244,0.00025399943,0.00013572525,0.00023186322,0.00041132217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009138337,0.0000036720357,0.00042207594,0.000036636426,0.000004196733,0.000031198793,0.0000119356255,0.00005459202,0.99760014,0.000057002486,0.00002812937,0.0016591027],"study_design_scores_gemma":[0.00001809791,0.00009742075,0.053336807,0.000012392487,0.000028099214,0.00074506656,0.00004158399,0.0012264645,0.9409229,0.00027953324,0.0032804932,0.000011067927],"about_ca_topic_score_codex":0.00027864263,"about_ca_topic_score_gemma":0.00064025534,"teacher_disagreement_score":0.0009699168,"about_ca_system_score_codex":0.0001842664,"about_ca_system_score_gemma":0.00012876329,"threshold_uncertainty_score":0.003244698},"labels":[],"label_agreement":null},{"id":"W2146776548","doi":"10.1074/mcp.m112.023986","title":"The Metabolic Regulation of Sporulation and Parasporal Crystal Formation in Bacillus thuringiensis Revealed by Transcriptomics and Proteomics","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Bacillus thuringiensis; Biochemistry; Amino acid; Citric acid cycle; Pentose phosphate pathway; Metabolism; Tricarboxylic acid; Metabolic pathway; Biology; Spore; Enzyme; Proteomics; Proteome; Bacteria; Chemistry; Microbiology; Glycolysis; Gene","score_opus":0.003134558413247464,"score_gpt":0.17842181970609755,"score_spread":0.17528726129285008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146776548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9877593,0.0034419396,0.0040461663,0.00017677931,0.000022859966,0.000025974135,0.0031007263,0.0001345197,0.0012918579],"genre_scores_gemma":[0.98638064,0.0028575924,0.0043277284,0.00012947661,0.00002603369,0.000058791156,0.0039533675,0.000044165266,0.002222226],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999082,0.0000076425185,0.0000061894602,0.00003693769,0.000024142453,0.000016816626],"domain_scores_gemma":[0.99991953,0.000010680401,0.00003194386,0.0000065076815,0.000017634582,0.000013635269],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009575746,0.00046298385,0.00034435728,0.0004051333,0.0001775246,0.00037962422,0.00009841713,0.0002755375,0.00030183286],"category_scores_gemma":[0.000090545334,0.00020816989,0.0003353666,0.00043317475,0.00018877818,0.00035324035,0.00020595772,0.0003693968,0.00026236236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007532846,0.000007596964,0.0010362635,0.0000445753,0.0000043401524,0.000048845628,0.000029724746,0.00006599555,0.9971221,0.000043490716,0.000033761724,0.0014878584],"study_design_scores_gemma":[0.000024866154,0.0003422458,0.3193125,0.000039141443,0.000071169285,0.00052298827,0.0003808413,0.0060196104,0.6680765,0.00043491198,0.0047241026,0.00005104812],"about_ca_topic_score_codex":0.0013258051,"about_ca_topic_score_gemma":0.0011485361,"teacher_disagreement_score":0.0013258051,"about_ca_system_score_codex":0.00025061722,"about_ca_system_score_gemma":0.00021030394,"threshold_uncertainty_score":0.0026361346},"labels":[],"label_agreement":null},{"id":"W2147701483","doi":"10.1074/mcp.m300080-mcp200","title":"Identification of Metal-binding Proteins in Human Hepatoma Lines by Immobilized Metal Affinity Chromatography and Mass Spectrometry","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Trace Elements in Health","field":"Nursing","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Chemistry; Mass spectrometry; Metalloprotein; Peptide; Hep G2; Affinity chromatography; Chromatography; Biochemistry; Electrospray ionization; In vitro; Enzyme","score_opus":0.010279495916695075,"score_gpt":0.2615827383101667,"score_spread":0.2513032423934716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147701483","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97037506,0.003350844,0.018768359,0.00020538997,0.000040997526,0.0002522721,0.0035136207,0.00051648373,0.0029770483],"genre_scores_gemma":[0.96092445,0.0027534077,0.021189766,0.0001604452,0.000026733367,0.00023844921,0.009238748,0.0000879261,0.005380149],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998584,0.000016209586,0.000014663426,0.000033208024,0.00004954247,0.000027947459],"domain_scores_gemma":[0.9998342,0.000040588562,0.00003237876,0.000025263758,0.000048477257,0.000019015675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014285826,0.00035773203,0.00025438864,0.00063890853,0.00017432762,0.00036648594,0.00020315328,0.00017577155,0.00074761035],"category_scores_gemma":[0.00021187142,0.00015068504,0.00020963869,0.00052783673,0.000140058,0.00012623759,0.00022536734,0.00027331224,0.000813902],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011826559,0.000019876725,0.001578867,0.000024856263,0.000008601153,0.00010127008,0.0000309564,0.000024870562,0.9965842,0.000022755572,0.00005259773,0.0014330131],"study_design_scores_gemma":[0.000044861317,0.00048586307,0.09974021,0.000012862989,0.00009640409,0.0022418674,0.00022379338,0.0018190134,0.8871631,0.000098117416,0.00805173,0.000022138476],"about_ca_topic_score_codex":0.0021983697,"about_ca_topic_score_gemma":0.0022509068,"teacher_disagreement_score":0.0021983697,"about_ca_system_score_codex":0.00017355556,"about_ca_system_score_gemma":0.00015712941,"threshold_uncertainty_score":0.004371226},"labels":[],"label_agreement":null},{"id":"W2148104731","doi":"10.1074/mcp.m700500-mcp200","title":"Discovery and Verification of Head-and-neck Cancer Biomarkers by Differential Protein Expression Analysis Using iTRAQ Labeling, Multidimensional Liquid Chromatography, and Tandem Mass Spectrometry","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"14-3-3 protein interactions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":219,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Biology; Biomarker discovery; Biomarker; Tandem mass spectrometry; Molecular biology; Cancer; Proteomics; Chemistry; Cancer research; Biochemistry; Mass spectrometry; Gene; Genetics; Chromatography","score_opus":0.008495805162051015,"score_gpt":0.24238314161667504,"score_spread":0.23388733645462403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148104731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97081417,0.0027880576,0.02325928,0.00012533063,0.00003161061,0.00015163227,0.0018450038,0.00019742205,0.00078757666],"genre_scores_gemma":[0.92411226,0.0024875544,0.0652653,0.0002600084,0.00003059331,0.00043257256,0.0054533854,0.000049358692,0.0019088828],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995763,0.00005204569,0.000040458614,0.00013124401,0.00014983564,0.000050094546],"domain_scores_gemma":[0.9997671,0.00004535404,0.000066434404,0.000026728869,0.00007462821,0.000019795998],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005914673,0.00042745622,0.00040384114,0.00090320414,0.00027326404,0.0003568762,0.00023654413,0.00033958108,0.0004713779],"category_scores_gemma":[0.0005119235,0.00012816122,0.00031150848,0.0006203546,0.00029426755,0.0002459996,0.00022484944,0.00034294263,0.0002613622],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007643935,0.000020291687,0.0022830926,0.00005052164,0.000013705736,0.000037397942,0.00001916468,0.000054208784,0.9941413,0.000042104937,0.000042689146,0.0032190687],"study_design_scores_gemma":[0.00002451294,0.00036783214,0.06084604,0.000011920523,0.000085125255,0.0007869009,0.0000729528,0.0026531504,0.93193793,0.00017298212,0.0030248407,0.000015771298],"about_ca_topic_score_codex":0.0008739679,"about_ca_topic_score_gemma":0.0011953453,"teacher_disagreement_score":0.00090320414,"about_ca_system_score_codex":0.00041396613,"about_ca_system_score_gemma":0.00033647948,"threshold_uncertainty_score":0.0031280518},"labels":[],"label_agreement":null},{"id":"W2148342716","doi":"10.1074/mcp.r600004-mcp200","title":"Discovery of Urinary Biomarkers","year":2006,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":403,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institutes of Health","keywords":"Urinary system; Proteomics; Biomarker discovery; Biomarker; Urine; Chemistry; Proteome; Exosome; Medicine; Internal medicine; Microvesicles; Biochemistry","score_opus":0.01631311989694141,"score_gpt":0.28531933137895055,"score_spread":0.26900621148200915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148342716","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12560607,0.5656018,0.24296792,0.014349273,0.0060142456,0.0007421692,0.008855194,0.0025473728,0.033316],"genre_scores_gemma":[0.555583,0.20721182,0.19299638,0.007980996,0.002956405,0.0007553369,0.008495001,0.00027000107,0.023751106],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988319,0.00027307332,0.00008305535,0.00029888732,0.000411183,0.00010185785],"domain_scores_gemma":[0.999121,0.00023193419,0.00018091498,0.000085339605,0.00030312763,0.00007765134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014041729,0.0009799439,0.0012737729,0.0028328046,0.00031571492,0.0023638818,0.0007033625,0.0015709117,0.0017584221],"category_scores_gemma":[0.0025665371,0.0004171549,0.00075484364,0.0018583365,0.00045355305,0.001344085,0.0011862094,0.0014376533,0.0016060171],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005196291,0.00026877102,0.028342452,0.005895623,0.0008375382,0.001968583,0.0002486214,0.001357325,0.23967043,0.017645407,0.028756574,0.674489],"study_design_scores_gemma":[0.000121831974,0.0011460854,0.028245032,0.0021987082,0.00095127104,0.006414109,0.00041571452,0.013401738,0.43102783,0.018725073,0.49715272,0.00019989026],"about_ca_topic_score_codex":0.0004150532,"about_ca_topic_score_gemma":0.00054331636,"teacher_disagreement_score":0.0028328046,"about_ca_system_score_codex":0.0005676575,"about_ca_system_score_gemma":0.0008428471,"threshold_uncertainty_score":0.0074260235},"labels":[],"label_agreement":null},{"id":"W2148421335","doi":"10.1074/mcp.m900088-mcp200","title":"Identification and Quantification of Glycoproteins Using Ion-Pairing Normal-phase Liquid Chromatography and Mass Spectrometry","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Alberta Glycomics Centre; Institute for Biological Sciences; National Research Council Canada","funders":"","keywords":"Chromatography; Chemistry; Glycopeptide; Glycan; PNGase F; Glycoprotein; Tandem mass spectrometry; Fetuin; Mass spectrometry; Biochemistry","score_opus":0.011826512567692554,"score_gpt":0.2737212875182624,"score_spread":0.26189477495056984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148421335","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57722723,0.009314371,0.40368015,0.00064619957,0.00019531643,0.00046619753,0.0021600125,0.0023845446,0.003925994],"genre_scores_gemma":[0.5218151,0.007082857,0.46475938,0.0005317437,0.000104847284,0.00038411753,0.0019329948,0.00024942003,0.003139437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910754,0.0001344633,0.000049436574,0.0002538989,0.00039665145,0.000058078178],"domain_scores_gemma":[0.99967396,0.00008955208,0.00006906415,0.00004794676,0.0000900713,0.000029353912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057942944,0.0009115404,0.00047885766,0.00096417876,0.00036234784,0.00077138474,0.0005625571,0.00074936857,0.00046143847],"category_scores_gemma":[0.0007681754,0.00022253238,0.00040941135,0.00059519,0.0005918167,0.00070156535,0.0005979112,0.0008834262,0.0005581952],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004172885,0.000023549204,0.0005708005,0.00004739948,0.00000984039,0.00003107111,0.000011318099,0.00007963061,0.98986024,0.00012542824,0.0000766514,0.00912238],"study_design_scores_gemma":[0.0000063842317,0.00012848314,0.0044043097,0.000009938036,0.000017183771,0.0004027675,0.000027110831,0.0037370122,0.98810285,0.00041508258,0.0027251719,0.000023622977],"about_ca_topic_score_codex":0.0008205997,"about_ca_topic_score_gemma":0.00094445655,"teacher_disagreement_score":0.00096417876,"about_ca_system_score_codex":0.000576348,"about_ca_system_score_gemma":0.0005056081,"threshold_uncertainty_score":0.004181683},"labels":[],"label_agreement":null},{"id":"W2148435252","doi":"10.1074/mcp.m600134-mcp200","title":"Reconstructing the Regulatory Kinase Pathways of Myogenesis from Phosphopeptide Data","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Ottawa Hospital; University of Ottawa","funders":"Heart and Stroke Foundation of Canada","keywords":"Phosphopeptide; Myogenesis; Cell biology; Computational biology; Chemistry; Computer science; Kinase; Biology; Myocyte","score_opus":0.012383976238624349,"score_gpt":0.2008625534420687,"score_spread":0.18847857720344433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148435252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5429361,0.0023539944,0.4374669,0.00046617026,0.000090157824,0.00022139937,0.009232125,0.0028098088,0.0044233403],"genre_scores_gemma":[0.6095376,0.0037876328,0.3718378,0.000094691946,0.000023751387,0.00030949377,0.012585978,0.0003556569,0.0014674682],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9998325,0.00002837238,0.000011368152,0.00006709049,0.000037661357,0.000023014527],"domain_scores_gemma":[0.99979347,0.00007818669,0.00004285965,0.000025314122,0.00003897097,0.000021166703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047306766,0.0009272573,0.0005831837,0.00134944,0.0004049603,0.0010337268,0.000619116,0.00050541805,0.001820736],"category_scores_gemma":[0.00080053543,0.000646718,0.0012336846,0.0012596864,0.00029304772,0.00094414986,0.00035031734,0.00089164905,0.0010568227],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015416235,0.0003220552,0.01646666,0.0014185288,0.0002497399,0.0014609654,0.00025852455,0.39344257,0.48326007,0.016174447,0.002622222,0.08278265],"study_design_scores_gemma":[0.000080585116,0.00023971334,0.009453441,0.000062579675,0.00018397838,0.00042155903,0.0002243393,0.8621974,0.09470015,0.019653942,0.012714779,0.000067573645],"about_ca_topic_score_codex":0.0028640358,"about_ca_topic_score_gemma":0.004883892,"teacher_disagreement_score":0.0028640358,"about_ca_system_score_codex":0.0007932236,"about_ca_system_score_gemma":0.0014912497,"threshold_uncertainty_score":0.0060909986},"labels":[],"label_agreement":null},{"id":"W2148685096","doi":"10.1074/mcp.m300088-mcp200","title":"A Proteomic Analysis of Arginine-methylated Protein Complexes","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":358,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Arginine; Chemistry; Biochemistry; Computational biology; Biology; Amino acid","score_opus":0.00619822719021567,"score_gpt":0.22433406387458651,"score_spread":0.21813583668437084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148685096","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9432854,0.009417397,0.03552062,0.0006093976,0.00027743314,0.0003285247,0.0044859173,0.00040102776,0.005674228],"genre_scores_gemma":[0.8768748,0.007841648,0.08932407,0.0007735868,0.00019044295,0.00040850914,0.013379837,0.00022415174,0.010982949],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996809,0.000028017505,0.000027729491,0.0001048774,0.000104366845,0.00005409789],"domain_scores_gemma":[0.9998265,0.000028971725,0.000025407546,0.000013614745,0.00005963714,0.000046026427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002508204,0.0008219989,0.000609397,0.0010112374,0.0005716697,0.00042870615,0.0004950563,0.00057677965,0.0012143124],"category_scores_gemma":[0.00029112154,0.00026822978,0.000663006,0.0007643218,0.0002054272,0.00039948893,0.0004275785,0.000664453,0.00078401424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051641353,0.000020060636,0.0002471463,0.00007612754,0.000018074925,0.00011676112,0.000020807505,0.000015249629,0.9981939,0.000044429664,0.000064877066,0.0011309123],"study_design_scores_gemma":[0.00003123541,0.00038590236,0.046229698,0.00003697155,0.00013614343,0.0036497945,0.00020068914,0.0033954727,0.93285,0.00026749098,0.012774329,0.000042378226],"about_ca_topic_score_codex":0.0005672454,"about_ca_topic_score_gemma":0.00071998267,"teacher_disagreement_score":0.0012143124,"about_ca_system_score_codex":0.00029119258,"about_ca_system_score_gemma":0.00023493907,"threshold_uncertainty_score":0.004062295},"labels":[],"label_agreement":null},{"id":"W2148762097","doi":"10.1074/mcp.m100030-mcp200","title":"The Rickettsia prowazekii Invasion Gene Homolog (invA) Encodes a Nudix Hydrolase Active on Adenosine (5′)-pentaphospho-(5′)-adenosine","year":2002,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Signaling Pathways in Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Institute of General Medical Sciences; Ministry of Defense","keywords":"Rickettsia prowazekii; Adenosine; Gene; Biology; Hydrolase; Cell biology; Biochemistry; Genetics; Enzyme; Rickettsia","score_opus":0.012412617783599082,"score_gpt":0.20849173532739024,"score_spread":0.19607911754379115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148762097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889677,0.0024146754,0.0050704745,0.00014263178,0.000047023394,0.00004187504,0.0018212835,0.00030669424,0.0011876554],"genre_scores_gemma":[0.96905154,0.0015708351,0.013709505,0.00006965079,0.000025427744,0.000060922008,0.010181885,0.000046497673,0.0052837366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999261,0.000005962633,0.000006341974,0.000023775023,0.000018856117,0.00001904581],"domain_scores_gemma":[0.99989486,0.000013998296,0.00003703949,0.0000075981366,0.000011034916,0.000035329784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000829676,0.0006856851,0.000361844,0.00028446777,0.00018275426,0.00031410297,0.00013789386,0.00028008252,0.0010573389],"category_scores_gemma":[0.000120180586,0.00020232571,0.00034424814,0.00026363315,0.00019156314,0.0002020541,0.0002953508,0.0004554615,0.00090324495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006961897,0.000017996368,0.00081687426,0.00005212376,0.0000050407007,0.00013945994,0.000028090702,0.000040570878,0.99652535,0.00009641103,0.0000819169,0.0021265997],"study_design_scores_gemma":[0.000059475013,0.00057885423,0.081679955,0.000039130817,0.00005929808,0.0042994977,0.00025499373,0.0016587593,0.8828567,0.00034304714,0.028139042,0.0000312851],"about_ca_topic_score_codex":0.00046357978,"about_ca_topic_score_gemma":0.0004177305,"teacher_disagreement_score":0.0010573389,"about_ca_system_score_codex":0.00025702483,"about_ca_system_score_gemma":0.00021648729,"threshold_uncertainty_score":0.0035371184},"labels":[],"label_agreement":null},{"id":"W2149354590","doi":"10.1074/mcp.m900566-mcp200","title":"Deletion of Immunoproteasome Subunits Imprints on the Transcriptome and Has a Broad Impact on Peptides Presented by Major Histocompatibility Complex I molecules","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research","keywords":"Major histocompatibility complex; Biology; Transcriptome; Proteasome; Immune system; Proteome; Cell biology; Gene; Minor histocompatibility antigen; Proteomics; Repertoire; Proteolysis; Function (biology); Antigen presentation; Genetics; T cell; Gene expression; Biochemistry; Enzyme","score_opus":0.016516328842324283,"score_gpt":0.24156757477401183,"score_spread":0.22505124593168754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149354590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943606,0.0006785629,0.0026432243,0.00008534417,0.000027450498,0.000012344927,0.001007189,0.0000937849,0.0010913792],"genre_scores_gemma":[0.9938286,0.0006115024,0.0013019531,0.000069341106,0.00001141523,0.000029676303,0.0012447725,0.00007122316,0.002831641],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980015,0.000019602508,0.00002019997,0.000058137786,0.000050333783,0.000051728544],"domain_scores_gemma":[0.99981683,0.000031673615,0.00006254951,0.000025222107,0.000009705459,0.000054026408],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000086498,0.0003479903,0.00021387554,0.00019763998,0.000098433644,0.0003336199,0.0002103513,0.0002488932,0.0016262479],"category_scores_gemma":[0.00008643764,0.00018288552,0.00025991196,0.00013401291,0.0002669969,0.00013419142,0.00024832858,0.00059483136,0.0004617513],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045005578,0.000008061948,0.00011006958,0.000010635676,0.0000024582162,0.000036664514,0.00000462551,0.000026263968,0.99931,0.00003374612,0.0000091478505,0.000403154],"study_design_scores_gemma":[0.0000116046795,0.0001548876,0.016920019,0.0000102049025,0.00002409405,0.0003928829,0.000043528442,0.0006624859,0.97917914,0.00007344995,0.0025223633,0.0000055520254],"about_ca_topic_score_codex":0.00021900916,"about_ca_topic_score_gemma":0.00033235166,"teacher_disagreement_score":0.0016262479,"about_ca_system_score_codex":0.00017313771,"about_ca_system_score_gemma":0.00017155666,"threshold_uncertainty_score":0.0054403543},"labels":[],"label_agreement":null},{"id":"W2149677668","doi":"10.1074/mcp.m111.009233","title":"Proteomic Analyses Reveal an Acidic Prime Side Specificity for the Astacin Metalloprotease Family Reflected by Physiological Substrates","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Proteases; Cleavage (geology); Scissile bond; Proteolysis; Metalloproteinase; Biochemistry; Chemistry; Protease; Kallikrein; Extracellular; Biology; Matrix metalloproteinase; Enzyme","score_opus":0.0676795752179776,"score_gpt":0.29183557256664455,"score_spread":0.22415599734866695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149677668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910779,0.0019069111,0.0043998733,0.0001035525,0.000015984067,0.00001448864,0.00082754117,0.000046160567,0.0016077561],"genre_scores_gemma":[0.9879936,0.0017496743,0.0056567206,0.00014274304,0.000019586696,0.000024175548,0.0019543269,0.000022052387,0.002437219],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99990606,0.000009203639,0.000007097115,0.000027822365,0.00002878213,0.00002104993],"domain_scores_gemma":[0.9998772,0.000018492303,0.00003513924,0.000009762562,0.000030157338,0.000029192805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012676242,0.0002893688,0.00020150654,0.00035752324,0.00015958701,0.00032114156,0.00010626033,0.00027356148,0.0009368696],"category_scores_gemma":[0.00019254026,0.00011577618,0.00026445056,0.0002484093,0.00016024911,0.0002635085,0.00017449341,0.00033516795,0.00053226127],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006391784,0.000004096732,0.0011736212,0.00002582556,0.00000642044,0.00010929752,0.000022074862,0.000015985344,0.99753904,0.000036243797,0.00002981478,0.0009735698],"study_design_scores_gemma":[0.00000834333,0.00024181872,0.16704209,0.000019922325,0.000053028354,0.0046056593,0.0002638961,0.0012229797,0.81996936,0.00032688846,0.0062284386,0.00001753623],"about_ca_topic_score_codex":0.00028433464,"about_ca_topic_score_gemma":0.00031931346,"teacher_disagreement_score":0.0009368696,"about_ca_system_score_codex":0.00009302504,"about_ca_system_score_gemma":0.00009314167,"threshold_uncertainty_score":0.0031341314},"labels":[],"label_agreement":null},{"id":"W2149942632","doi":"10.1074/mcp.m110.002493","title":"A Proteomic Analysis Reveals Differential Regulation of the σS-Dependent yciGFE(katN) Locus by YncC and H-NS in Salmonella and Escherichia coli K-12","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Centre National de la Recherche Scientifique; Keio University","keywords":"rpoS; Biology; Escherichia coli; Salmonella enterica; Gene; Operon; Regulon; Molecular biology; Salmonella; Promoter; Transcription (linguistics); Gene expression; Genetics; Bacteria","score_opus":0.0027191679124589432,"score_gpt":0.18323356483210954,"score_spread":0.1805143969196506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149942632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848855,0.00026225005,0.00061483856,0.000026832078,0.0000042330194,0.0000061461924,0.0003804974,0.000016106103,0.00020041417],"genre_scores_gemma":[0.9958677,0.00025276397,0.0013431013,0.000039221253,0.000003226423,0.00001689261,0.0014466832,0.000018013536,0.0010123121],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998969,0.000009776505,0.000012086082,0.000026265638,0.000032704356,0.000022417778],"domain_scores_gemma":[0.99985886,0.000021662367,0.000039719776,0.000012544907,0.000029027726,0.00003812422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000084956504,0.00030668866,0.0003017874,0.0001813638,0.00008940048,0.00027357583,0.00013115292,0.00019344784,0.0003653148],"category_scores_gemma":[0.00015689063,0.00015877832,0.00023846643,0.00017123275,0.00018380929,0.000108489796,0.0001891077,0.00020743524,0.00021986195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044122462,0.000004377636,0.00032451577,0.000010929847,0.0000026621228,0.000017422943,0.000008831218,0.000014085194,0.9993851,0.0000067128394,0.0000048792995,0.00017636904],"study_design_scores_gemma":[0.000009684811,0.00022238365,0.08663817,0.000008566032,0.000028246659,0.00039841182,0.00013900906,0.0010278989,0.910854,0.000028504768,0.00063134293,0.000013860247],"about_ca_topic_score_codex":0.0016101457,"about_ca_topic_score_gemma":0.0017289716,"teacher_disagreement_score":0.0016101457,"about_ca_system_score_codex":0.00022751339,"about_ca_system_score_gemma":0.00020316296,"threshold_uncertainty_score":0.003201604},"labels":[],"label_agreement":null},{"id":"W2150152371","doi":"10.1074/mcp.m111.016378","title":"Quantitative Proteomics Reveals That Only a Subset of the Endoplasmic Reticulum Contributes to the Phagosome","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Medical Research Council; Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft","keywords":"Phagosome; Endoplasmic reticulum; Endosome; Cell biology; Organelle; Golgi apparatus; Proteome; Biology; Phagocytosis; Proteomics; Chemistry; Biochemistry; Intracellular","score_opus":0.011984689435160232,"score_gpt":0.22679902001144062,"score_spread":0.21481433057628038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150152371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9722129,0.003988032,0.021372553,0.0002549218,0.000048622667,0.000024101297,0.0006715814,0.0001492219,0.0012779927],"genre_scores_gemma":[0.97484016,0.0031281943,0.01852434,0.00030980585,0.00004067522,0.00004711744,0.0011484029,0.00007864572,0.0018825968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997054,0.000029505018,0.000020057507,0.00010717551,0.00009546698,0.000042465068],"domain_scores_gemma":[0.99977535,0.000055529345,0.000048402708,0.000036968515,0.000058462985,0.000025313399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042444153,0.00042111683,0.00043927162,0.00036983425,0.00021661074,0.00059583253,0.00025357597,0.0004067293,0.000373047],"category_scores_gemma":[0.0003380202,0.00018198637,0.00033845712,0.00030459906,0.0002770593,0.00042811356,0.00026894244,0.0004371479,0.00041835496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025471438,0.0000056037106,0.00036309968,0.000031171818,0.000005560887,0.000020168174,0.000008037654,0.000017806433,0.9985796,0.00003595102,0.000014667637,0.0008927589],"study_design_scores_gemma":[0.000007552979,0.00019818326,0.034233373,0.00002135286,0.000062966436,0.0006922792,0.00009927034,0.0020334288,0.9591747,0.00023801616,0.0032239123,0.000014886414],"about_ca_topic_score_codex":0.0004128601,"about_ca_topic_score_gemma":0.00042500495,"teacher_disagreement_score":0.00059583253,"about_ca_system_score_codex":0.0002300325,"about_ca_system_score_gemma":0.00026678015,"threshold_uncertainty_score":0.002244711},"labels":[],"label_agreement":null},{"id":"W2150158059","doi":"10.1074/mcp.m400128-mcp200","title":"A Proteomic Analysis of Lysosomal Integral Membrane Proteins Reveals the Diverse Composition of the Organelle","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Endosome; Endoplasmic reticulum; Golgi apparatus; Cell biology; Endoplasmic-reticulum-associated protein degradation; Membrane protein; Biology; Integral membrane protein; Endocytic cycle; Organelle; Cytosol; Lysosome; Biochemistry; Peripheral membrane protein; Membrane contact site; Vesicle-associated membrane protein 8; Endocytosis; Membrane; Unfolded protein response; Cell","score_opus":0.0062184041624791095,"score_gpt":0.19995642657215545,"score_spread":0.19373802240967636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150158059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9869365,0.0041539227,0.0056981486,0.00013210508,0.00002971136,0.000047761227,0.0013602198,0.00008986183,0.0015516807],"genre_scores_gemma":[0.9720795,0.0041446676,0.016167166,0.00020151115,0.000020392743,0.000045625573,0.0045225746,0.00002809629,0.0027903724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999884,0.000009636861,0.000010311626,0.00003245055,0.0000400676,0.00002344666],"domain_scores_gemma":[0.9999125,0.000010732286,0.000014699448,0.000007055092,0.000026370257,0.000028717608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014203895,0.00041738342,0.00027689637,0.00063335744,0.0003274035,0.00032515673,0.00014270742,0.0002822124,0.0004981316],"category_scores_gemma":[0.00017375757,0.0001157944,0.000428176,0.0004910701,0.00017958532,0.00022405313,0.00022890355,0.00023253889,0.00034489445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004649206,0.000008871481,0.0005549043,0.00004207147,0.000010027227,0.00009765905,0.000007964055,0.000021323325,0.9975062,0.00003255474,0.000036187066,0.00163576],"study_design_scores_gemma":[0.000013758543,0.0003554197,0.07361802,0.000024407644,0.0001449512,0.0038551884,0.00011877534,0.0020356453,0.9118077,0.00016716926,0.007833818,0.000025112759],"about_ca_topic_score_codex":0.00096177397,"about_ca_topic_score_gemma":0.0013068564,"teacher_disagreement_score":0.00096177397,"about_ca_system_score_codex":0.00031818787,"about_ca_system_score_gemma":0.000374038,"threshold_uncertainty_score":0.002308607},"labels":[],"label_agreement":null},{"id":"W2150204892","doi":"10.1074/mcp.m110.001420","title":"An Isotopically Coded CID-cleavable Biotinylated Cross-linker for Structural Proteomics","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Victoria","funders":"","keywords":"Chemistry; Linker; Cleavage (geology); Peptide; Mass spectrometry; Bottom-up proteomics; Tandem mass spectrometry; Combinatorial chemistry; Proteomics; Computational biology; Chromatography; Biochemistry; Protein mass spectrometry; Biology; Computer science","score_opus":0.007167221099260603,"score_gpt":0.28623276190533514,"score_spread":0.27906554080607454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150204892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.53711545,0.015116465,0.43853745,0.0005308459,0.00019971277,0.0005263884,0.0010208063,0.0014826519,0.0054702074],"genre_scores_gemma":[0.6113299,0.007944678,0.37296042,0.00036589545,0.000033560078,0.00030228624,0.0021302314,0.00019231255,0.004740705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99964523,0.00006161654,0.000025363312,0.00008027458,0.0001482483,0.00003929516],"domain_scores_gemma":[0.99974304,0.00007766375,0.000055140794,0.000036824247,0.000049720016,0.00003753615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007730489,0.0007601445,0.00032863847,0.00033071535,0.00027876912,0.000426519,0.00063459796,0.00067991967,0.0013770262],"category_scores_gemma":[0.00052328716,0.00027843416,0.0003217778,0.00043095846,0.00033810333,0.00043196758,0.0003298806,0.0009803599,0.0006689949],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018341498,0.000013198066,0.00008043374,0.00006384094,0.000004064257,0.000022086377,0.000007727727,0.000096701355,0.9959067,0.00019233415,0.00003487203,0.0035597552],"study_design_scores_gemma":[0.0000039113474,0.000059871185,0.0003896782,0.0000051894967,0.0000053815816,0.00016773395,0.0000041551743,0.00086185284,0.9960169,0.000054920452,0.0024259707,0.000004373672],"about_ca_topic_score_codex":0.00071367866,"about_ca_topic_score_gemma":0.0016334988,"teacher_disagreement_score":0.0013770262,"about_ca_system_score_codex":0.00092370063,"about_ca_system_score_gemma":0.0007182696,"threshold_uncertainty_score":0.006702006},"labels":[],"label_agreement":null},{"id":"W2150245222","doi":"10.1074/mcp.m113.031310","title":"Proteolytic Post-translational Modification of Proteins: Proteomic Tools and Methodology","year":2013,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":174,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Proteolysis; Proteomics; Protease; Posttranslational modification; Chemistry; Proteolytic enzymes; Biochemistry; Peptide; Bottom-up proteomics; Computational biology; Biology; Enzyme; Tandem mass spectrometry; Mass spectrometry; Chromatography","score_opus":0.12721163417814335,"score_gpt":0.35682769533541925,"score_spread":0.2296160611572759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150245222","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003681169,0.9934964,0.0039132508,0.00028571612,0.00022413438,0.000016771006,0.00004130023,0.000042426662,0.0016118187],"genre_scores_gemma":[0.0015453772,0.9931085,0.003923176,0.00022714012,0.00022503745,0.000025345147,0.000071738315,0.000006990285,0.00086662016],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99949384,0.00007283874,0.0000519911,0.00009741557,0.00025154144,0.000032406748],"domain_scores_gemma":[0.9996575,0.00012377174,0.000061933606,0.000022694643,0.00010343547,0.000030602303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011691521,0.0013219739,0.0016851841,0.0036680729,0.00030405767,0.0011993027,0.0014044318,0.0013527606,0.0011110536],"category_scores_gemma":[0.00063157623,0.0005173565,0.00046648883,0.003548614,0.0009905281,0.0018124852,0.00087340304,0.002030787,0.0027804582],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005850008,0.00012849484,0.00022619544,0.014936599,0.00010786814,0.00045861027,0.000076350036,0.0005174943,0.04102589,0.0071902596,0.016396519,0.9188773],"study_design_scores_gemma":[0.000011396661,0.00009735951,0.0009066553,0.0013123183,0.000071731054,0.0027561581,0.00005273271,0.00037448248,0.017327087,0.0038677277,0.9731646,0.000057739853],"about_ca_topic_score_codex":0.00050676323,"about_ca_topic_score_gemma":0.0005626973,"teacher_disagreement_score":0.0036680729,"about_ca_system_score_codex":0.0006494766,"about_ca_system_score_gemma":0.0007498947,"threshold_uncertainty_score":0.006183088},"labels":[],"label_agreement":null},{"id":"W2150708590","doi":"10.1074/mcp.o111.009969","title":"Managing the Quality of Life for Proteins: Focusing on the Exit Path","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Proteomics; Protein degradation; Computational biology; Posttranslational modification; Computer science; Bioinformatics; Biology; Cell biology; Genetics; Biochemistry","score_opus":0.05244247661598342,"score_gpt":0.25614375248843313,"score_spread":0.2037012758724497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150708590","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001152259,0.47194058,0.0029345218,0.32048327,0.19592524,0.000029397668,0.000088224086,0.00014580025,0.007300713],"genre_scores_gemma":[0.009668975,0.633482,0.0029359823,0.10387464,0.22755502,0.000058535832,0.00017019967,0.0003282744,0.02192643],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967573,0.00078608707,0.00033711162,0.00039458973,0.001320677,0.00040417397],"domain_scores_gemma":[0.9885611,0.0040232516,0.0007465939,0.00036709622,0.0028888274,0.0034132032],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0069577573,0.0011514012,0.002152329,0.0016437325,0.002878381,0.013523845,0.0018465776,0.0054411325,0.010416333],"category_scores_gemma":[0.008210024,0.0005856756,0.0007759087,0.0012307381,0.0055871927,0.01732327,0.004849653,0.014436484,0.0049050637],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109932334,0.000051234176,0.00043257308,0.0018336389,0.00004694482,0.00027575617,0.0011142209,0.000097390744,0.0021412403,0.022350548,0.809647,0.16189948],"study_design_scores_gemma":[0.000007904939,0.000048591493,0.0004313656,0.00063226576,0.000021387592,0.00041973524,0.0009014436,0.00006902057,0.00037568496,0.009552707,0.98751605,0.000024024892],"about_ca_topic_score_codex":0.0010789951,"about_ca_topic_score_gemma":0.0024375813,"teacher_disagreement_score":0.013523845,"about_ca_system_score_codex":0.0033733966,"about_ca_system_score_gemma":0.0050611845,"threshold_uncertainty_score":0.03679657},"labels":[],"label_agreement":null},{"id":"W2151446023","doi":"10.1074/mcp.m112.025775","title":"Quantitative Proteomics Reveals the Induction of Mitophagy in Tumor Necrosis Factor-α-activated (TNFα) Macrophages","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"Mitophagy; Tumor necrosis factor alpha; Cell biology; Antigen presentation; Biology; Acquired immune system; Antigen processing; Immune system; Innate immune system; Antigen; Cytokine; Mitochondrion; MHC class I; Proteomics; Immunology; Major histocompatibility complex; T cell; Autophagy; Biochemistry; Apoptosis; Gene","score_opus":0.015606102405983972,"score_gpt":0.26160706042324616,"score_spread":0.24600095801726218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151446023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9869517,0.0017541546,0.010168091,0.00007917894,0.000025851989,0.000021701257,0.00030151103,0.00005359488,0.0006441943],"genre_scores_gemma":[0.98998123,0.001131827,0.0065790764,0.00007512154,0.000016818629,0.000043317592,0.00029805425,0.000026478401,0.0018481351],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998442,0.000030980813,0.000013507436,0.000040836603,0.000042529085,0.00002792615],"domain_scores_gemma":[0.9998622,0.000028165901,0.000047351907,0.0000180711,0.000027104557,0.00001713506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030635056,0.00022139506,0.00021787283,0.00029046365,0.0001400409,0.00029924294,0.0001228141,0.00025727245,0.0003480517],"category_scores_gemma":[0.00019484229,0.0001295079,0.00018661238,0.00020487205,0.00025427903,0.00022971928,0.00019184664,0.0003313696,0.00020114335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000815823,0.000004994772,0.00011673383,0.0000128399915,0.0000023261452,0.000020887348,0.000009866503,0.0000134286465,0.9994149,0.000029934186,0.000005330936,0.00028713464],"study_design_scores_gemma":[0.000010238058,0.0001328544,0.006761351,0.0000051862185,0.000011397811,0.0002931972,0.00003658084,0.0005904863,0.9913974,0.00008476894,0.00067192054,0.000004622715],"about_ca_topic_score_codex":0.00019087485,"about_ca_topic_score_gemma":0.00021023821,"teacher_disagreement_score":0.0003480517,"about_ca_system_score_codex":0.00020942691,"about_ca_system_score_gemma":0.00011545447,"threshold_uncertainty_score":0.0016201735},"labels":[],"label_agreement":null},{"id":"W2152095891","doi":"10.1074/mcp.m114.043489","title":"The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High-performance Quadrupole and an Ultra-high-field Orbitrap Analyzer","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":333,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada)","funders":"","keywords":"Orbitrap; Spectrum analyzer; Mass spectrometry; Hybrid mass spectrometer; Quadrupole mass analyzer; Quadrupole; Triple quadrupole mass spectrometer; Chemistry; Field (mathematics); Spectrometer; Analytical Chemistry (journal); Materials science; Optics; Chromatography; Physics; Selected reaction monitoring; Tandem mass spectrometry; Atomic physics","score_opus":0.0040988727597430176,"score_gpt":0.20863951816169363,"score_spread":0.2045406454019506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152095891","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06839703,0.011036194,0.85739785,0.0007943328,0.0009015067,0.0025297455,0.011367349,0.030619375,0.01695658],"genre_scores_gemma":[0.101002805,0.0051572598,0.83595,0.003039445,0.00061367423,0.0022958387,0.016843125,0.0033082627,0.031789526],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976974,0.00021773014,0.00012514714,0.00059766514,0.0011744003,0.0001876432],"domain_scores_gemma":[0.99887866,0.00025936353,0.00016838989,0.00014392137,0.0004173994,0.00013229696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024435122,0.0017101731,0.0015174551,0.0028420975,0.0012578898,0.0017966965,0.0030943544,0.0018503864,0.013477117],"category_scores_gemma":[0.0019196266,0.0010376055,0.0009662824,0.0015641765,0.001096916,0.0024138407,0.0021275785,0.002093698,0.0063388045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009883557,0.00029528834,0.003185,0.0018275897,0.000427113,0.000556619,0.00018376524,0.0010896128,0.77525055,0.0050259037,0.034921575,0.17624854],"study_design_scores_gemma":[0.000756672,0.0026750194,0.014519086,0.0003545875,0.00051182316,0.009212527,0.00023692839,0.03618611,0.674311,0.00564687,0.25506344,0.00052596227],"about_ca_topic_score_codex":0.0014983389,"about_ca_topic_score_gemma":0.0017636972,"teacher_disagreement_score":0.013477117,"about_ca_system_score_codex":0.0008152502,"about_ca_system_score_gemma":0.0024341214,"threshold_uncertainty_score":0.04508543},"labels":[],"label_agreement":null},{"id":"W2152341218","doi":"10.1074/mcp.m111.012302","title":"Proteomics Analyses of Human Optic Nerve Head Astrocytes Following Biomechanical Strain","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glaucoma and retinal disorders","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; University of Waterloo; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research","keywords":"Optic nerve; Proteomics; Strain (injury); Tandem mass spectrometry; Optic neuropathy; Blot; Chemistry; Molecular biology; Cell biology; Pathology; Biology; Medicine; Mass spectrometry; Biochemistry; Neuroscience; Anatomy; Chromatography","score_opus":0.04655511225214115,"score_gpt":0.30765085611795323,"score_spread":0.2610957438658121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152341218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972241,0.00059636723,0.0012403404,0.000041127325,0.000011147749,0.000022146365,0.0003549161,0.000010010194,0.0004999397],"genre_scores_gemma":[0.9880995,0.0018073618,0.0056905593,0.00015292791,0.000020082267,0.00009987575,0.0013317077,0.000014068716,0.002784019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999069,0.000012274039,0.000006944508,0.000015520518,0.000040639698,0.000017696864],"domain_scores_gemma":[0.9999232,0.000012232883,0.000016270948,0.0000076706865,0.000029423627,0.00001109231],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017106286,0.00018841532,0.00019450595,0.00023424345,0.00027484063,0.00020814053,0.00010947048,0.0002143283,0.00052829756],"category_scores_gemma":[0.00016672653,0.00010114942,0.00020606989,0.00025374527,0.0001561666,0.00013576422,0.000157142,0.00017588137,0.00025467185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012433264,0.000011187099,0.00074593327,0.000026226517,0.0000059849053,0.000078740384,0.000051821746,0.000027190186,0.9982096,0.000012189743,0.000015483329,0.00069137814],"study_design_scores_gemma":[0.00003428693,0.0006225747,0.10131324,0.000011232859,0.00005999494,0.00094255724,0.00063341035,0.0009583092,0.8935369,0.00012356199,0.0017449377,0.000018938943],"about_ca_topic_score_codex":0.0015431974,"about_ca_topic_score_gemma":0.0022491503,"teacher_disagreement_score":0.0015431974,"about_ca_system_score_codex":0.00012190367,"about_ca_system_score_gemma":0.0001634262,"threshold_uncertainty_score":0.0030685067},"labels":[],"label_agreement":null},{"id":"W2152414729","doi":"10.1074/mcp.m200085-mcp200","title":"Proteome Mapping of the Protozoan Parasite Leishmania and Application to the Study of Drug Targets and Resistance Mechanisms","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":135,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval","funders":"","keywords":"Proteome; Biology; Leishmania; Proteomics; Parasite hosting; Leishmania donovani; Leishmania infantum; Drug resistance; Visceral leishmaniasis; Biochemistry; Computational biology; Leishmaniasis; Microbiology; Genetics; Gene","score_opus":0.010150916398459312,"score_gpt":0.24740893106153333,"score_spread":0.23725801466307403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152414729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92885053,0.024839636,0.039459974,0.0008309253,0.00008574713,0.0000788833,0.0025086077,0.00042835498,0.0029174718],"genre_scores_gemma":[0.9289748,0.01385228,0.051349346,0.00019331383,0.00004055728,0.000051256637,0.0025747907,0.00006223881,0.0029014307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999305,0.00001475007,0.000004748858,0.000018399714,0.000023194098,0.000008328777],"domain_scores_gemma":[0.99993944,0.000010104009,0.000015581056,0.0000055130354,0.000016297177,0.000013039595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014021272,0.0003101802,0.00020534711,0.0005471485,0.00019382041,0.0003187049,0.00018037748,0.0003275559,0.00068886275],"category_scores_gemma":[0.00013187803,0.00016072165,0.00026656402,0.00034459226,0.00013469576,0.00026370128,0.00025454976,0.00030828486,0.0003285379],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018618966,0.000005482691,0.00018175704,0.000056918532,0.000004891245,0.00003234515,0.000010350551,0.000031596897,0.997398,0.000033844804,0.0000320208,0.0021941739],"study_design_scores_gemma":[0.000015995927,0.00042716681,0.06543886,0.00003385879,0.000064095046,0.0033280086,0.0002045677,0.0034604114,0.91306883,0.00041591437,0.013512716,0.00002952611],"about_ca_topic_score_codex":0.00046080814,"about_ca_topic_score_gemma":0.00045624742,"teacher_disagreement_score":0.00068886275,"about_ca_system_score_codex":0.00013734862,"about_ca_system_score_gemma":0.00013829456,"threshold_uncertainty_score":0.0023044348},"labels":[],"label_agreement":null},{"id":"W2153724129","doi":"10.1074/mcp.m000002-mcp201","title":"A Lentiviral Functional Proteomics Approach Identifies Chromatin Remodeling Complexes Important for the Induction of Pluripotency","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Chromatin remodeling; Tandem affinity purification; Cell biology; Transcription factor; Reprogramming; Biology; KLF4; Protein subunit; Molecular biology; Chemistry; Genetics; Biochemistry; Affinity chromatography; Cell; Gene; SOX2","score_opus":0.011116765278666152,"score_gpt":0.21348627931112862,"score_spread":0.20236951403246248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153724129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84538525,0.0032841659,0.14163785,0.0006133216,0.000114197595,0.00031921818,0.0022383041,0.0009323275,0.0054754373],"genre_scores_gemma":[0.90805566,0.0020649813,0.07626165,0.00030493553,0.000038129103,0.0001989151,0.0037104017,0.00016651106,0.009198899],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979514,0.0000329659,0.000020280766,0.000041780884,0.000079528065,0.000030410534],"domain_scores_gemma":[0.9998678,0.000029773299,0.000033747026,0.000019818166,0.000017816436,0.00003108661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032682627,0.000503178,0.00023875672,0.0005713386,0.0002885008,0.0004916012,0.000350714,0.0003225521,0.0014648853],"category_scores_gemma":[0.00021769092,0.00023862519,0.00029289298,0.00023128474,0.00030485966,0.0002702353,0.00035827505,0.0007171079,0.0006945755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018096804,0.000012790391,0.00011837648,0.000014401223,0.0000038083317,0.000018641525,0.0000055691785,0.00003281164,0.99799913,0.00018458474,0.000042349755,0.0015493942],"study_design_scores_gemma":[0.00000975294,0.0000817846,0.0017475991,0.0000048801244,0.000014684582,0.00022534642,0.000008095857,0.0012589885,0.99131876,0.00012344008,0.0052015954,0.000004999671],"about_ca_topic_score_codex":0.00040202925,"about_ca_topic_score_gemma":0.0008072143,"teacher_disagreement_score":0.0014648853,"about_ca_system_score_codex":0.00051585713,"about_ca_system_score_gemma":0.00028756796,"threshold_uncertainty_score":0.004900515},"labels":[],"label_agreement":null},{"id":"W2153825808","doi":"10.1074/mcp.m900190-mcp200","title":"Proteomic Analysis of Microtubule-associated Proteins during Macrophage Activation","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Health Sciences Centre; University of Toronto","funders":"Canadian Institutes of Health Research; University of Toronto","keywords":"Cell biology; Biology; Proteomics; Microtubule; Cytoskeleton; Lipopolysaccharide; Cytokine; Quantitative proteomics; Macrophage; Signal transduction; Immunology; In vitro; Biochemistry; Cell; Gene","score_opus":0.0058618929323012705,"score_gpt":0.21361024689366453,"score_spread":0.20774835396136326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153825808","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966305,0.0011531598,0.0010794204,0.000040435167,0.000008447726,0.000014706846,0.0006047025,0.000020537796,0.00044808863],"genre_scores_gemma":[0.9940572,0.0008974444,0.0023241334,0.00007408793,0.000012885152,0.000043740154,0.0015440102,0.000010527422,0.0010360194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999144,0.000011296455,0.0000049033238,0.000019429715,0.000029845134,0.000020120755],"domain_scores_gemma":[0.99991405,0.00001430344,0.000021706019,0.000004624556,0.000025409186,0.000019893581],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012783961,0.000248152,0.00027140317,0.0004981188,0.00023177502,0.00024758483,0.00012286867,0.00021537654,0.0004937702],"category_scores_gemma":[0.00016852641,0.00011008789,0.00018758069,0.00040307443,0.00011677761,0.00014930415,0.0001992344,0.00022439775,0.00029998246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012309391,0.000009316154,0.00097596983,0.00003531071,0.000010194498,0.000072902076,0.000018584633,0.000032897988,0.99798465,0.000017036224,0.000027239541,0.00069265923],"study_design_scores_gemma":[0.000026372816,0.0003876551,0.2358717,0.000024938126,0.00009678447,0.001403813,0.0003168573,0.0027983196,0.75529104,0.0002125942,0.0035455755,0.000024376915],"about_ca_topic_score_codex":0.00039054354,"about_ca_topic_score_gemma":0.0006289752,"teacher_disagreement_score":0.0004981188,"about_ca_system_score_codex":0.00019189146,"about_ca_system_score_gemma":0.00011965903,"threshold_uncertainty_score":0.0016518235},"labels":[],"label_agreement":null},{"id":"W2154279182","doi":"10.1074/mcp.m900134-mcp200","title":"Identification of Five Candidate Lung Cancer Biomarkers by Proteomics Analysis of Conditioned Media of Four Lung Cancer Cell Lines","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biomarkers in Disease Mechanisms","field":"Immunology and Microbiology","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Mount Sinai Hospital","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lung cancer; Proteomics; Cancer; Cancer research; Biology; Adenocarcinoma; Proteome; Pathology; Medicine; Internal medicine; Bioinformatics; Biochemistry","score_opus":0.004768751251021486,"score_gpt":0.24000406646958403,"score_spread":0.23523531521856253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154279182","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926963,0.0012087391,0.0033188586,0.000077580095,0.000026577718,0.00008993091,0.002006825,0.00006343404,0.000511655],"genre_scores_gemma":[0.9645972,0.0014444015,0.020496162,0.00015905731,0.00002599914,0.00026445274,0.011025298,0.000031525815,0.0019559904],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986076,0.0000181883,0.000016291422,0.00002625502,0.000053033367,0.000025437097],"domain_scores_gemma":[0.9998573,0.000035028464,0.000020402462,0.000012653602,0.000050240218,0.000024324396],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019157483,0.0005452577,0.00045190644,0.00042379388,0.00021658474,0.00035906406,0.00021494224,0.00026917155,0.00061162934],"category_scores_gemma":[0.00029478536,0.00010957157,0.00030821376,0.00043549252,0.00015960711,0.000159109,0.000276263,0.00034007692,0.0003795913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086825625,0.000018595605,0.0016382731,0.000034635006,0.000008021642,0.00004723748,0.00001177369,0.000038579634,0.9970885,0.000008490563,0.000028711953,0.0009904538],"study_design_scores_gemma":[0.000031052117,0.0007327339,0.08116152,0.000012272141,0.00010391782,0.0007729911,0.00012442614,0.0022564982,0.9120079,0.000042493433,0.0027324276,0.000021657785],"about_ca_topic_score_codex":0.001099586,"about_ca_topic_score_gemma":0.0012661869,"teacher_disagreement_score":0.001099586,"about_ca_system_score_codex":0.000194768,"about_ca_system_score_gemma":0.00023670543,"threshold_uncertainty_score":0.002186358},"labels":[],"label_agreement":null},{"id":"W2154511147","doi":"10.1074/mcp.r800015-mcp200","title":"A Human Proteome Detection and Quantitation Project","year":2009,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":198,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Cancer Institute; National Institutes of Health","keywords":"Proteome; Human proteome project; Computational biology; Chemistry; Chromatography; Proteomics; Biology; Biochemistry; Gene","score_opus":0.030585864548016824,"score_gpt":0.33241032115209884,"score_spread":0.301824456604082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154511147","genre_codex":"other","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.015354487,0.050406236,0.21218267,0.20481224,0.029805047,0.0048931856,0.20293453,0.022045946,0.25756562],"genre_scores_gemma":[0.04336573,0.025373114,0.3459916,0.06271943,0.005383699,0.004208852,0.34484944,0.00227829,0.16582982],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949477,0.0014390652,0.00026422445,0.0009985778,0.0020023657,0.00034802605],"domain_scores_gemma":[0.992663,0.00064967666,0.0004272695,0.00094467285,0.003636407,0.0016788786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.011786316,0.0015786828,0.00094312447,0.002058009,0.0013395585,0.0029631145,0.0017706293,0.002640436,0.03257025],"category_scores_gemma":[0.0061449404,0.00059978047,0.00096057885,0.0023344217,0.0007327222,0.0025883461,0.0042088097,0.0028281033,0.046033807],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005123151,0.00013993485,0.0014942806,0.00048788454,0.00006937644,0.00025180227,0.00010445751,0.00028060933,0.017532084,0.018730499,0.7679933,0.19240344],"study_design_scores_gemma":[0.000085881984,0.0001638662,0.0017073898,0.00017577244,0.000025154754,0.00031452067,0.00003531793,0.00063390756,0.0054648956,0.003816908,0.9875488,0.000027578288],"about_ca_topic_score_codex":0.0017609786,"about_ca_topic_score_gemma":0.0014325564,"teacher_disagreement_score":0.03257025,"about_ca_system_score_codex":0.0026779543,"about_ca_system_score_gemma":0.007928586,"threshold_uncertainty_score":0.108958304},"labels":[],"label_agreement":null},{"id":"W2154897268","doi":"10.1074/mcp.m111.009712","title":"A Quantitative Proteomic Approach of the Different Stages of Colorectal Cancer Establishes OLFM4 as a New Nonmetastatic Tumor Marker","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Inflammatory mediators and NSAID effects","field":"Medicine","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Cancer Research; Ligue Contre le Cancer; Amgen","keywords":"Colorectal cancer; Laser capture microdissection; Immunohistochemistry; Proteomics; Proteome; Microdissection; Biology; Cancer research; Biomarker; Cancer; Bioinformatics; Gene expression; Immunology; Gene; Genetics","score_opus":0.017114819358649714,"score_gpt":0.23855653736520047,"score_spread":0.22144171800655074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154897268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9543838,0.0036854364,0.037986454,0.00014755149,0.000033927714,0.00009337462,0.0018320007,0.00024429167,0.0015930964],"genre_scores_gemma":[0.93098944,0.0015884223,0.062876344,0.00011490658,0.000029113424,0.00017384611,0.002234418,0.000057865735,0.0019356963],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997367,0.000046064233,0.000020703657,0.0000701502,0.000089558394,0.000036860347],"domain_scores_gemma":[0.9997539,0.000056865407,0.00008077834,0.000025209936,0.000054409393,0.000028705635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043823314,0.00045860506,0.0003084004,0.0014196269,0.0002489803,0.00042940673,0.00023574934,0.00031118907,0.0006737277],"category_scores_gemma":[0.00051226304,0.0001472588,0.0003299702,0.00063756877,0.00026819602,0.00035719038,0.00033620468,0.00036715754,0.00024219544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012464508,0.000012867002,0.0043031992,0.00006417446,0.000020131418,0.000038052436,0.000027566763,0.000079318525,0.9888208,0.00006112968,0.000036273443,0.006411791],"study_design_scores_gemma":[0.000015536223,0.00059185905,0.25914818,0.000031064283,0.00010542962,0.0014443259,0.00014145684,0.0059845326,0.7251251,0.0004412412,0.006932566,0.000038678638],"about_ca_topic_score_codex":0.00077279,"about_ca_topic_score_gemma":0.000975765,"teacher_disagreement_score":0.0014196269,"about_ca_system_score_codex":0.00033323935,"about_ca_system_score_gemma":0.00021741877,"threshold_uncertainty_score":0.0024178028},"labels":[],"label_agreement":null},{"id":"W2154927069","doi":"10.1074/mcp.m114.037705","title":"Regulation Dynamics of Leishmania Differentiation: Deconvoluting Signals and Identifying Phosphorylation Trends","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Commission; University of Victoria","keywords":"Amastigote; Phagolysosome; Phosphorylation; Leishmania; Biology; Cell biology; Dephosphorylation; Protein phosphorylation; Intracellular; Hyperphosphorylation; Extracellular; Kinase; Biochemistry; Protein kinase A; Phagosome; Phosphatase; Parasite hosting","score_opus":0.016023197999645723,"score_gpt":0.2634741118616815,"score_spread":0.2474509138620358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154927069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99017113,0.002392655,0.0052643707,0.00008214866,0.000018353881,0.000023676736,0.0005696144,0.0000680774,0.0014099154],"genre_scores_gemma":[0.9924722,0.0020804731,0.003593109,0.00006211548,0.000012965654,0.00003747113,0.0006717416,0.000020868518,0.0010489984],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999273,0.000006125815,0.000004747819,0.000025811438,0.000018943376,0.00001710153],"domain_scores_gemma":[0.9999157,0.000009697167,0.000030241563,0.0000038134913,0.000023502991,0.00001695193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013530231,0.00020927122,0.00015617823,0.00045324667,0.00011455643,0.00035460532,0.00014402278,0.0001719056,0.0007212476],"category_scores_gemma":[0.0001583148,0.000133063,0.00018430945,0.00046576725,0.00020982105,0.00033085662,0.00017240166,0.00032695374,0.00026041552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022267154,0.000022406479,0.0034788465,0.00011632862,0.000010675968,0.000064446,0.00008455778,0.00012576408,0.9915598,0.00014627408,0.000066546236,0.004101746],"study_design_scores_gemma":[0.000020384434,0.00027998985,0.22727934,0.000029979497,0.000053948635,0.0004941259,0.00034362357,0.0070967865,0.7601104,0.00040220414,0.0038576282,0.00003160779],"about_ca_topic_score_codex":0.0004856062,"about_ca_topic_score_gemma":0.00051631755,"teacher_disagreement_score":0.0007212476,"about_ca_system_score_codex":0.00014803764,"about_ca_system_score_gemma":0.000099374796,"threshold_uncertainty_score":0.002412796},"labels":[],"label_agreement":null},{"id":"W2155128697","doi":"10.1074/mcp.m000014-mcp201","title":"Comprehensive Profiling of Cartilage Extracellular Matrix Formation and Maturation Using Sequential Extraction and Label-free Quantitative Proteomics","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Osteoarthritis Treatment and Mechanisms","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"National Health and Medical Research Council; Medical Research Council","keywords":"Proteomics; Extracellular matrix; Cartilage; Quantitative proteomics; Chemistry; Computational biology; Chromatography; Biology; Biochemistry; Anatomy","score_opus":0.024775622793436602,"score_gpt":0.2964430773808567,"score_spread":0.2716674545874201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155128697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8711601,0.0060692225,0.11418328,0.0002345157,0.0000654612,0.0003461988,0.005359302,0.0006731741,0.001908817],"genre_scores_gemma":[0.8169807,0.00578505,0.16091454,0.0004036311,0.00006958067,0.0009002248,0.010525603,0.00028960887,0.0041310606],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937844,0.00005058202,0.000049474507,0.0001850051,0.00025557863,0.00008090896],"domain_scores_gemma":[0.99969006,0.00007330758,0.000077106,0.000028699094,0.000098378754,0.000032374555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006261667,0.00071006414,0.00052132213,0.00087043,0.00034570508,0.0005763021,0.000411202,0.00043195073,0.00042668066],"category_scores_gemma":[0.0005852339,0.0002512366,0.00041710518,0.00081767683,0.00037710855,0.000392236,0.0003688561,0.0006527431,0.00042099878],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041969306,0.000010075505,0.00028542965,0.00004885911,0.000006180922,0.000015409298,0.000015329722,0.000040284653,0.99768746,0.00002739799,0.000028415947,0.0017932007],"study_design_scores_gemma":[0.000011018894,0.00017770284,0.024809213,0.00001384258,0.000044995195,0.0003720014,0.00004880988,0.003448681,0.96844995,0.00014544213,0.0024553076,0.000023046789],"about_ca_topic_score_codex":0.0009246679,"about_ca_topic_score_gemma":0.0016966228,"teacher_disagreement_score":0.0009246679,"about_ca_system_score_codex":0.00037826627,"about_ca_system_score_gemma":0.00048072133,"threshold_uncertainty_score":0.0033115149},"labels":[],"label_agreement":null},{"id":"W2155290272","doi":"10.1074/mcp.m700077-mcp200","title":"The in Vivo Brain Interactome of the Amyloid Precursor Protein","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Toronto Western Hospital; Occupational Cancer Research Centre; University of Toronto","funders":"National Institute of General Medical Sciences; Wellcome Trust","keywords":"Interactome; Amyloid precursor protein; Protein–protein interaction; In vivo; Cell biology; P3 peptide; Amyloid (mycology); Protein precursor; Biology; Chemistry; Computational biology; Biochemistry; Alzheimer's disease; Pathology; Medicine; Genetics; Gene","score_opus":0.010081713555346955,"score_gpt":0.2732095630004669,"score_spread":0.2631278494451199,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155290272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9839625,0.0027891432,0.011019267,0.00017298927,0.000016537262,0.000014290682,0.0004371356,0.000051310657,0.0015368884],"genre_scores_gemma":[0.9791068,0.0029511387,0.013263783,0.00014795394,0.00003080869,0.00007086286,0.0015349962,0.000047578887,0.0028460985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998809,0.00001830756,0.000003911146,0.000041877498,0.0000359216,0.000019102137],"domain_scores_gemma":[0.99991155,0.000027249018,0.000018554556,0.000009468319,0.000015280662,0.000017826493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016430479,0.00020947105,0.00021030456,0.0005287557,0.00033665434,0.0003129155,0.00013038618,0.00023232016,0.0011096045],"category_scores_gemma":[0.00016888497,0.00012040829,0.00019784171,0.00025437967,0.00021230479,0.00025981065,0.00028219787,0.00044644746,0.00034659426],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005480179,0.0000061763944,0.00030406978,0.000014648771,0.000006961567,0.000051137373,0.000019360512,0.000023118855,0.99840957,0.00006227488,0.000024179348,0.0010237667],"study_design_scores_gemma":[0.000013766602,0.00034412078,0.11366393,0.000014356508,0.00008995909,0.00393253,0.00019369277,0.0018970195,0.8728454,0.001000764,0.0059849033,0.00001959239],"about_ca_topic_score_codex":0.0005378941,"about_ca_topic_score_gemma":0.00090457086,"teacher_disagreement_score":0.0011096045,"about_ca_system_score_codex":0.00016060522,"about_ca_system_score_gemma":0.00018153229,"threshold_uncertainty_score":0.0037119985},"labels":[],"label_agreement":null},{"id":"W2156344403","doi":"10.1074/mcp.m112.022442","title":"Multiplexed Quantitation of Endogenous Proteins in Dried Blood Spots by Multiple Reaction Monitoring - Mass Spectrometry","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biosimilars and Bioanalytical Methods","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Victoria","funders":"","keywords":"Dried blood; Analyte; Chromatography; Chemistry; Selected reaction monitoring; Mass spectrometry; Dried blood spot; Biomarker discovery; Quantitative proteomics; Tandem mass spectrometry; Label-free quantification; Population; Small molecule; Whole blood; Multiplex; Sample preparation; Immunoassay; Blood sampling; Proteomics; Bioinformatics; Biochemistry; Biology; Medicine","score_opus":0.02608756240591608,"score_gpt":0.2511941104659813,"score_spread":0.2251065480600652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156344403","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.61824644,0.009236558,0.36269408,0.00032708907,0.000451567,0.0006632568,0.002319025,0.003163203,0.0028988163],"genre_scores_gemma":[0.5366427,0.0072539183,0.44681257,0.0006317194,0.00022165607,0.001274667,0.001726163,0.00020612449,0.005230445],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972453,0.00043188603,0.00014796335,0.001020383,0.0010123752,0.00014204429],"domain_scores_gemma":[0.9993297,0.00016270265,0.00019587278,0.00006684267,0.0001909568,0.000054015643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018422892,0.0012268376,0.00092839106,0.0017738551,0.00034591067,0.0010043939,0.00078290777,0.00085659866,0.00063189474],"category_scores_gemma":[0.0015247486,0.0005126987,0.0005349712,0.0010798625,0.0006178375,0.0005853926,0.0006764843,0.00093855587,0.00077653566],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018057729,0.00008158078,0.00082409225,0.00013820935,0.000060055132,0.000104745006,0.00007870967,0.00027824004,0.9868058,0.0001628619,0.00025107354,0.01103406],"study_design_scores_gemma":[0.00002755727,0.00029833577,0.00453453,0.000018778916,0.000063621505,0.00052441517,0.00003635156,0.009492813,0.9822406,0.0002482852,0.0024685857,0.00004620831],"about_ca_topic_score_codex":0.00039905214,"about_ca_topic_score_gemma":0.0007126769,"teacher_disagreement_score":0.0018422892,"about_ca_system_score_codex":0.00040699152,"about_ca_system_score_gemma":0.0003611813,"threshold_uncertainty_score":0.009743094},"labels":[],"label_agreement":null},{"id":"W2156359430","doi":"10.1074/mcp.m400004-mcp200","title":"Differential Proteomics Reveals Multiple Components in Retrogradely Transported Axoplasm After Nerve Injury","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Nerve injury and regeneration","field":"Neuroscience","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; IONICS Mass Spectrometry (Canada)","funders":"National Center for Research Resources","keywords":"Axoplasm; Axoplasmic transport; Axotomy; Cell biology; Calpain; Biology; Regenerative process; Proteomics; Regeneration (biology); Neuroscience; Axon; Chemistry; Biochemistry; Enzyme","score_opus":0.020600686279351136,"score_gpt":0.2250486075477653,"score_spread":0.20444792126841416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156359430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924238,0.0027084209,0.0033911716,0.00006819897,0.000026400081,0.000024516112,0.0005146414,0.00006350336,0.00077940023],"genre_scores_gemma":[0.98214,0.00290984,0.009179532,0.0002254431,0.00002568303,0.000053461194,0.0019429418,0.000042952648,0.0034802037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998921,0.000006782814,0.00000921536,0.000038091217,0.000029117,0.000024690877],"domain_scores_gemma":[0.99989057,0.000010956096,0.0000398889,0.0000074690574,0.000023095348,0.000027996643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011261285,0.00044660497,0.00028910933,0.0006012695,0.00023984117,0.00039557726,0.00020786487,0.00042040824,0.00064075046],"category_scores_gemma":[0.00010466538,0.00017558679,0.00035249558,0.00025191542,0.0002426133,0.0002706249,0.0003261698,0.0005188561,0.00036171917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034423094,0.000005620401,0.00027037028,0.000034654284,0.0000060941366,0.000056371366,0.0000137767165,0.000011198522,0.99903643,0.000014446083,0.000008891729,0.0005076799],"study_design_scores_gemma":[0.000013947217,0.0003854347,0.12840234,0.00003303295,0.00007606172,0.0017362295,0.00015982796,0.0010253029,0.8654185,0.00014081824,0.002589155,0.000019425644],"about_ca_topic_score_codex":0.0004802093,"about_ca_topic_score_gemma":0.000845204,"teacher_disagreement_score":0.00064075046,"about_ca_system_score_codex":0.0002608469,"about_ca_system_score_gemma":0.0001805284,"threshold_uncertainty_score":0.0021435022},"labels":[],"label_agreement":null},{"id":"W2156806661","doi":"10.1074/mcp.o114.046573","title":"Mass Spectrometric Quantification of Histone Post-translational Modifications by a Hybrid Chemical Labeling Method","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"","keywords":"Chemistry; Posttranslational modification; Chromatography; Histone; Mass spectrometry; Biochemistry; DNA; Enzyme","score_opus":0.012827277912803067,"score_gpt":0.2713621321513282,"score_spread":0.2585348542385251,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156806661","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14121634,0.002693533,0.8408879,0.00040584514,0.0003038837,0.00048563755,0.0020060723,0.0053120963,0.0066886805],"genre_scores_gemma":[0.25637636,0.0034672413,0.7195709,0.0006872012,0.00014980674,0.0020924434,0.0028969569,0.00054338615,0.014215702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99760264,0.0003760007,0.00010081613,0.0006931136,0.0011017864,0.00012556034],"domain_scores_gemma":[0.9990853,0.00029176768,0.00015557707,0.00013709936,0.0002612681,0.00006894663],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017349106,0.0014583889,0.0006759675,0.0025261657,0.0007743321,0.00084251264,0.0015679142,0.0012482265,0.0029612824],"category_scores_gemma":[0.0011845033,0.00062952726,0.00058283145,0.001366494,0.000768832,0.000898765,0.00096586393,0.0016384169,0.0017669483],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009664189,0.00004605774,0.00036368365,0.00009366415,0.00005081633,0.00003489066,0.000034992696,0.00021494909,0.9890258,0.0004618307,0.00036940712,0.009207265],"study_design_scores_gemma":[0.00003040484,0.00019711915,0.0028819884,0.000017656044,0.00007216211,0.00033027102,0.000037072048,0.012551949,0.97676325,0.00045910405,0.006612293,0.00004665534],"about_ca_topic_score_codex":0.0010546715,"about_ca_topic_score_gemma":0.0022289823,"teacher_disagreement_score":0.0029612824,"about_ca_system_score_codex":0.0008821805,"about_ca_system_score_gemma":0.00063022727,"threshold_uncertainty_score":0.009906471},"labels":[],"label_agreement":null},{"id":"W2157826366","doi":"10.1074/mcp.m112.020057","title":"Mass Spectrometry–based Proteomic Analysis of the Matrix Microenvironment in Pluripotent Stem Cell Culture","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Western University","funders":"Canadian Institutes of Health Research","keywords":"Induced pluripotent stem cell; Matrigel; Cell biology; Embryonic stem cell; Stem cell; Stable isotope labeling by amino acids in cell culture; Extracellular matrix; Biology; Embryoid body; Cellular differentiation; Cell potency; Chemistry; Proteomics; Cell culture; Biochemistry; Genetics","score_opus":0.0064066480671876895,"score_gpt":0.22290626258665872,"score_spread":0.21649961451947103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157826366","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90047604,0.0054652444,0.08450863,0.00021769924,0.00010708304,0.00028806902,0.004344872,0.0004011337,0.0041911616],"genre_scores_gemma":[0.8702056,0.006774834,0.11127604,0.0004242881,0.000049271326,0.00029739982,0.007456121,0.00013246504,0.003383996],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979824,0.000022882972,0.00001951635,0.00003918773,0.00009251983,0.000027627286],"domain_scores_gemma":[0.9998448,0.000034688812,0.000024651217,0.0000121637795,0.00005800696,0.000025623971],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004242595,0.00057562476,0.00028129987,0.00074712356,0.00034009828,0.00036566408,0.00026076386,0.0002973676,0.0006006363],"category_scores_gemma":[0.00033678548,0.0001550792,0.00029039415,0.00051397976,0.00021766311,0.000317985,0.00026589874,0.00042078734,0.00040714868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014879411,0.000007837735,0.00020309261,0.00003035857,0.0000064325905,0.000051169132,0.000011897422,0.000056915866,0.9984628,0.00004815484,0.000024476802,0.0010819527],"study_design_scores_gemma":[0.000005022475,0.00008729983,0.008667215,0.000012406157,0.00003106129,0.00038196822,0.00004637799,0.0018255333,0.9864211,0.00010726855,0.002403677,0.000011021771],"about_ca_topic_score_codex":0.00063945254,"about_ca_topic_score_gemma":0.001058514,"teacher_disagreement_score":0.00074712356,"about_ca_system_score_codex":0.0001975731,"about_ca_system_score_gemma":0.00038270288,"threshold_uncertainty_score":0.0022437572},"labels":[],"label_agreement":null},{"id":"W2158001130","doi":"10.1074/mcp.m115.047951","title":"A Comprehensive Immunoreceptor Phosphotyrosine-based Signaling Network Revealed by Reciprocal Protein–Peptide Array Screening","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Receptor Mechanisms and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; Western University","funders":"Canadian Cancer Society Research Institute; Canada Research Chairs; Cancer Research Institute","keywords":"Interactome; SH2 domain; Computational biology; Immunoreceptor tyrosine-based activation motif; LYN; Biology; Signal transduction; Cell biology; Phosphopeptide; Phosphotyrosine-binding domain; Protein–protein interaction; Proto-oncogene tyrosine-protein kinase Src; Phosphorylation; Biochemistry","score_opus":0.01468442470340914,"score_gpt":0.2190857585881408,"score_spread":0.20440133388473167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158001130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9607355,0.0010235341,0.03337301,0.00008297013,0.000009307019,0.00008276876,0.002058027,0.0003389088,0.0022960769],"genre_scores_gemma":[0.96110654,0.0006823313,0.033853553,0.00008136712,0.000008213737,0.00007732139,0.003290363,0.00003228625,0.0008680591],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996612,0.000056140056,0.000019382232,0.000106566906,0.000103792474,0.00005282362],"domain_scores_gemma":[0.99987376,0.000040479877,0.000034315763,0.000013500585,0.00001659728,0.000021343465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024034388,0.00046432766,0.00034835725,0.00075032323,0.00019354228,0.00031864445,0.00021932408,0.00025853066,0.0008260801],"category_scores_gemma":[0.00026498814,0.00018962935,0.00033047487,0.0006221116,0.00017007175,0.00023701844,0.0003051263,0.00028293848,0.00035248414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006411675,0.000023494156,0.0012035824,0.000047753423,0.000025671943,0.00012966226,0.000015478538,0.0005928035,0.994197,0.00015443424,0.00008513813,0.0034607996],"study_design_scores_gemma":[0.000029815468,0.00055633456,0.043574892,0.000013576656,0.00028335137,0.0016795548,0.00009512413,0.041791186,0.9051301,0.00088622206,0.005919028,0.000040859468],"about_ca_topic_score_codex":0.00031227744,"about_ca_topic_score_gemma":0.0008167392,"teacher_disagreement_score":0.0008260801,"about_ca_system_score_codex":0.00019882848,"about_ca_system_score_gemma":0.00017491788,"threshold_uncertainty_score":0.0027635694},"labels":[],"label_agreement":null},{"id":"W2159186230","doi":"10.1074/mcp.m114.044404","title":"Tyrosine Phosphorylation of the Lyn Src Homology 2 (SH2) Domain Modulates Its Binding Affinity and Specificity*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto; University of New Brunswick; Canada Research Chairs; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"SH2 domain; LYN; Proto-oncogene tyrosine-protein kinase Src; Phosphorylation; Phosphotyrosine-binding domain; SH3 domain; GRB2; Biochemistry; Tyrosine-protein kinase CSK; Protein tyrosine phosphatase; Biology; Tyrosine kinase; Chemistry; Cell biology; Cancer research; Signal transduction","score_opus":0.014406526172302769,"score_gpt":0.21835148347773325,"score_spread":0.2039449573054305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159186230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99496245,0.0013806354,0.0013786388,0.000095127565,0.000020726266,0.0000059752297,0.00010369164,0.000030265155,0.0020224415],"genre_scores_gemma":[0.99836856,0.00041969147,0.0002731214,0.00002861227,0.000004759008,0.0000035587311,0.00008081318,0.0000045217034,0.0008163095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998987,0.000011987726,0.0000042699958,0.000026390977,0.000022590195,0.000036016503],"domain_scores_gemma":[0.99994683,0.000010213325,0.000014390438,0.0000037522914,0.0000083237655,0.00001637351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011782444,0.00017439411,0.00015996317,0.00009397593,0.00015255873,0.00035668828,0.00014553581,0.0002024446,0.0013618182],"category_scores_gemma":[0.00015690963,0.00011210586,0.00012154919,0.00013288979,0.00019764373,0.00022837645,0.0002271068,0.00023309341,0.00037551412],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006775252,0.000009026375,0.0008128857,0.00001537249,0.0000028271197,0.000048148857,0.000010050566,0.000055069067,0.9972464,0.00012604521,0.000055797704,0.0015505676],"study_design_scores_gemma":[0.000021683896,0.0001949763,0.074290074,0.0000073845845,0.000019683064,0.00035937564,0.00011335121,0.0034384115,0.9172724,0.00033214636,0.003937482,0.00001305901],"about_ca_topic_score_codex":0.0007627688,"about_ca_topic_score_gemma":0.00097389676,"teacher_disagreement_score":0.0013618182,"about_ca_system_score_codex":0.0002884645,"about_ca_system_score_gemma":0.00016216312,"threshold_uncertainty_score":0.004555762},"labels":[],"label_agreement":null},{"id":"W2159286617","doi":"10.1074/mcp.m110.004127","title":"Verification of Male Infertility Biomarkers in Seminal Plasma by Multiplex Selected Reaction Monitoring Assay","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Urologic and reproductive health conditions","field":"Medicine","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Azoospermia; Vasectomy; Andrology; Male infertility; Infertility; Obstructive azoospermia; Medicine; Urology; Semen; Gynecology; Internal medicine; Biology; Population; Pregnancy","score_opus":0.026356724843957804,"score_gpt":0.2563221553862792,"score_spread":0.22996543054232144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159286617","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9202063,0.0046214047,0.07137129,0.00017327542,0.00011149712,0.00024705217,0.0014699544,0.0005684479,0.0012309458],"genre_scores_gemma":[0.9086405,0.0021278078,0.084079206,0.00027482165,0.00007892025,0.00045502916,0.0021175002,0.000035686786,0.002190477],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990114,0.00023155207,0.00006525859,0.00032594806,0.00029248992,0.00007334338],"domain_scores_gemma":[0.9993862,0.00018747569,0.00019988244,0.00004018155,0.00013159792,0.000054525866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010779907,0.00081893767,0.00039007585,0.0011119393,0.00024733425,0.00064786425,0.0003209261,0.0005274075,0.0004925651],"category_scores_gemma":[0.0012919294,0.00025454658,0.00036098162,0.0006800791,0.0003990839,0.00023993106,0.00033548253,0.00049237616,0.0003219598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037448568,0.00009884659,0.011705201,0.00012881482,0.00006702029,0.00011609083,0.000103740815,0.00046654904,0.9738386,0.00014506427,0.000163739,0.012791895],"study_design_scores_gemma":[0.000038844544,0.0010136846,0.037661664,0.000025688882,0.0001404586,0.0009054753,0.000081064754,0.010778516,0.9462972,0.00024373164,0.0027770784,0.000036589692],"about_ca_topic_score_codex":0.00029546177,"about_ca_topic_score_gemma":0.00037201247,"teacher_disagreement_score":0.0011119393,"about_ca_system_score_codex":0.000238622,"about_ca_system_score_gemma":0.00026909326,"threshold_uncertainty_score":0.005701065},"labels":[],"label_agreement":null},{"id":"W2160162934","doi":"10.1074/mcp.m500088-mcp200","title":"Analysis of Intimal Proteoglycans in Atherosclerosis-prone and Atherosclerosis-resistant Human Arteries by Mass Spectrometry","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Proteoglycans and glycosaminoglycans research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Heart, Lung, and Blood Institute","keywords":"Lumican; Versican; Biglycan; Proteoglycan; Decorin; Extracellular matrix; Chemistry; Medicine; Pathology; Biochemistry","score_opus":0.008230000594708945,"score_gpt":0.23969940695894554,"score_spread":0.2314694063642366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160162934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.982675,0.004461069,0.010097225,0.00010661291,0.00004833434,0.00008884494,0.0009400006,0.00011572413,0.0014672593],"genre_scores_gemma":[0.9601772,0.0046188184,0.030720392,0.0002794473,0.00005467648,0.00014665406,0.001860947,0.00003926244,0.0021026076],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980396,0.00003090326,0.000015222747,0.00004992327,0.00007204339,0.000028034934],"domain_scores_gemma":[0.9998361,0.00003024195,0.00004237445,0.000012564879,0.000042868265,0.000035733778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036819035,0.00055298704,0.00035703342,0.0013528398,0.00030073704,0.00031701816,0.000201017,0.00045626043,0.00038075613],"category_scores_gemma":[0.00044942598,0.00020737333,0.00029621398,0.0006272774,0.0001907055,0.00013320835,0.00030285932,0.00032407232,0.0002634314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012883998,0.000031385753,0.003198332,0.00007600334,0.000031835316,0.00024075988,0.000068696834,0.00005236377,0.9927844,0.00006172867,0.000051319577,0.0032742843],"study_design_scores_gemma":[0.000045897476,0.0007229651,0.3645231,0.00010245922,0.00029744697,0.0053698467,0.00044943832,0.0059081865,0.6135574,0.0004893835,0.008471093,0.00006275224],"about_ca_topic_score_codex":0.0006010735,"about_ca_topic_score_gemma":0.0005248251,"teacher_disagreement_score":0.0013528398,"about_ca_system_score_codex":0.00011340414,"about_ca_system_score_gemma":0.00016457449,"threshold_uncertainty_score":0.0019472241},"labels":[],"label_agreement":null},{"id":"W2160379034","doi":"10.1074/mcp.r113.032862","title":"The Coming of Age of Phosphoproteomics—from Large Data Sets to Inference of Protein Functions","year":2013,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research","keywords":"Phosphoproteomics; Inference; Computational biology; Computer science; Biology; Cell biology; Artificial intelligence; Protein phosphorylation","score_opus":0.04469948088129011,"score_gpt":0.3280556884752417,"score_spread":0.2833562075939516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160379034","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000884036,0.9848208,0.00973672,0.001978084,0.00045097037,0.000016590819,0.00016939137,0.00011008072,0.0018333407],"genre_scores_gemma":[0.004438241,0.9819193,0.010795869,0.0009806431,0.00066643645,0.000033656972,0.0002982063,0.00003631698,0.00083133846],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991297,0.00018765651,0.000055121316,0.00018860435,0.00038770432,0.000051262083],"domain_scores_gemma":[0.9975431,0.0013849189,0.00016028968,0.00015320219,0.0006131672,0.00014538228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036101937,0.001108764,0.0025005557,0.0028292264,0.0003647674,0.0022251213,0.002114719,0.0015014653,0.0016019776],"category_scores_gemma":[0.0033279827,0.00063515006,0.00058942055,0.0037739642,0.0016997448,0.0048706564,0.0016737976,0.0030472367,0.0023333158],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014504447,0.000044313798,0.0005365384,0.014111116,0.00031041773,0.00026165132,0.00013471713,0.0013883753,0.01865521,0.024317427,0.035056625,0.9050385],"study_design_scores_gemma":[0.000021268246,0.0000956703,0.0017245166,0.001930196,0.00019104421,0.0015144177,0.00019524708,0.001756324,0.010100072,0.035766773,0.94660926,0.00009518014],"about_ca_topic_score_codex":0.00085603487,"about_ca_topic_score_gemma":0.0008223907,"teacher_disagreement_score":0.0036101937,"about_ca_system_score_codex":0.00113289,"about_ca_system_score_gemma":0.001218155,"threshold_uncertainty_score":0.019092739},"labels":[],"label_agreement":null},{"id":"W2161098464","doi":"10.1074/mcp.m111.008599","title":"Integrated Proteomic Profiling of Cell Line Conditioned Media and Pancreatic Juice for the Identification of Pancreatic Cancer Biomarkers","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University Health Network; University of Toronto","funders":"","keywords":"Pancreatic cancer; Pancreatic juice; Proteome; Cell culture; Chemistry; Cancer; Biology; Cancer research; Molecular biology; Computational biology; Pancreas; Biochemistry; Genetics","score_opus":0.01786516396331976,"score_gpt":0.25101292261484065,"score_spread":0.23314775865152088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161098464","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821031,0.0029257888,0.0113180345,0.00007905941,0.000024657249,0.00009367324,0.0026240486,0.00014595047,0.0006855977],"genre_scores_gemma":[0.9312194,0.0038159506,0.051411685,0.00020166887,0.00004139328,0.00021910059,0.011662086,0.000088091845,0.0013405164],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997179,0.000046722227,0.00002953661,0.0000715306,0.00010126101,0.000033025717],"domain_scores_gemma":[0.99979895,0.00006108734,0.000038629212,0.000022974984,0.00005017461,0.000028203252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045018335,0.00053479074,0.00065685157,0.0009622501,0.0002660174,0.00066701474,0.00022998884,0.0002741377,0.00031203934],"category_scores_gemma":[0.0005078856,0.00013491015,0.0003343908,0.00096180046,0.00019946496,0.0002991143,0.00051078154,0.00036032218,0.0002546777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009878136,0.000027291566,0.0021737777,0.000061229424,0.00001938088,0.00007466605,0.00002947069,0.000059953993,0.9948533,0.000015804157,0.000030144603,0.0025562202],"study_design_scores_gemma":[0.000016376238,0.0003717906,0.06846575,0.00002288687,0.00015061605,0.0010703226,0.00018746349,0.004431171,0.92153573,0.000111743626,0.0036064007,0.000029739063],"about_ca_topic_score_codex":0.00041448578,"about_ca_topic_score_gemma":0.00059243606,"teacher_disagreement_score":0.0009622501,"about_ca_system_score_codex":0.0001543235,"about_ca_system_score_gemma":0.00032408902,"threshold_uncertainty_score":0.0023807883},"labels":[],"label_agreement":null},{"id":"W2161363481","doi":"10.1074/mcp.m110.000554","title":"Proteomic Signatures in Plasma during Early Acute Renal Allograft Rejection","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Renal Transplantation Outcomes and Treatments","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of Victoria; Institute of Infection and Immunity; Prevention of Organ Failure; University of British Columbia","funders":"Novartis Pharma; Genome Canada","keywords":"Medicine; Chemistry","score_opus":0.005341299023535612,"score_gpt":0.23430308295082888,"score_spread":0.22896178392729327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161363481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99798465,0.0010540902,0.00063400366,0.00002323726,0.000010826207,0.000009323478,0.00009249965,0.000020566742,0.0001707307],"genre_scores_gemma":[0.99874395,0.00026722185,0.0006000887,0.000050886792,0.000014519549,0.000016455975,0.00014977141,0.000004847783,0.00015223985],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999605,0.0001112166,0.00003521991,0.000093088674,0.00010580792,0.00004958242],"domain_scores_gemma":[0.9995701,0.00014289285,0.0001410916,0.000025066078,0.00007241381,0.00004839739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050643313,0.00028160712,0.00046825444,0.0009336273,0.00025290018,0.00064192584,0.00021414609,0.00048273258,0.00032371722],"category_scores_gemma":[0.0012913148,0.0001545236,0.00017267757,0.00052730273,0.0003270061,0.00019256432,0.00031001144,0.00031501165,0.00013221409],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0051631466,0.00027048244,0.47423652,0.00024612492,0.00026099794,0.0023530398,0.00094936904,0.00047222327,0.48292372,0.00020098152,0.00033688865,0.03258648],"study_design_scores_gemma":[0.000047535148,0.0013406549,0.9458617,0.000024223233,0.00013076887,0.0058141304,0.0004502965,0.0020638288,0.042617485,0.00031528747,0.0013113096,0.000022708447],"about_ca_topic_score_codex":0.00027497456,"about_ca_topic_score_gemma":0.00018079816,"teacher_disagreement_score":0.0009336273,"about_ca_system_score_codex":0.00013845567,"about_ca_system_score_gemma":0.00009051685,"threshold_uncertainty_score":0.002678275},"labels":[],"label_agreement":null},{"id":"W2161885272","doi":"10.1074/mcp.m300053-mcp200","title":"ERp19 and ERp46, New Members of the Thioredoxin Family of Endoplasmic Reticulum Proteins","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Redox biology and oxidative stress","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Canadian Institutes of Health Research","funders":"","keywords":"Endoplasmic reticulum; Thioredoxin; Cell biology; Chemistry; STIM1; Biology; Biochemistry; Gene","score_opus":0.004991500480685201,"score_gpt":0.19715956152568578,"score_spread":0.1921680610450006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161885272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9720172,0.012102544,0.011150317,0.00034170944,0.00015962642,0.00005554736,0.0014950307,0.0001769534,0.0025009392],"genre_scores_gemma":[0.92224544,0.013759314,0.032168526,0.00044603567,0.00028207357,0.00010316351,0.0131335,0.00006296289,0.017798856],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998274,0.000014482277,0.00001593172,0.00004648777,0.00006568336,0.000029971281],"domain_scores_gemma":[0.9997298,0.00002346964,0.00010055202,0.000028317974,0.000053485754,0.00006428189],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002723153,0.00046953766,0.0003422078,0.0003707768,0.0002750637,0.0004945255,0.00019858181,0.0003460927,0.0018695955],"category_scores_gemma":[0.00033296153,0.00013598498,0.00040553222,0.00038502016,0.00019367687,0.00074274495,0.00034625147,0.00044987837,0.0009473185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005943693,0.00007537535,0.00417009,0.00018645047,0.0000380811,0.0012035336,0.00007599159,0.00010336818,0.97055995,0.00051709823,0.00037154087,0.022104243],"study_design_scores_gemma":[0.00011450368,0.0014229389,0.19114514,0.000062140985,0.00026270162,0.028941544,0.00033899446,0.0020974872,0.6991759,0.0018532623,0.074495934,0.000089433364],"about_ca_topic_score_codex":0.00014180187,"about_ca_topic_score_gemma":0.00017518726,"teacher_disagreement_score":0.0018695955,"about_ca_system_score_codex":0.0001665303,"about_ca_system_score_gemma":0.00016047573,"threshold_uncertainty_score":0.006254375},"labels":[],"label_agreement":null},{"id":"W2162057795","doi":"10.1074/mcp.m110.006239","title":"CIN85 Interacting Proteins in B Cells-Specific Role for SHIP-1","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"","keywords":"Cell biology; Phosphatidylinositol; Signal transducing adaptor protein; Endocytosis; Proto-oncogene tyrosine-protein kinase Src; Kinase; Receptor tyrosine kinase; Ubiquitin ligase; Chemistry; Tyrosine kinase; Signal transduction; Biology; Receptor; Ubiquitin; Biochemistry","score_opus":0.01821983924504079,"score_gpt":0.22380014952789787,"score_spread":0.2055803102828571,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162057795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888054,0.004369373,0.002756832,0.00018162679,0.000034567947,0.0000196425,0.00044984778,0.00009506717,0.00328767],"genre_scores_gemma":[0.9905998,0.0011785788,0.0020530764,0.00012081717,0.000013717203,0.000016498409,0.0009585558,0.000016198228,0.005042893],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999198,0.000007825726,0.000003864255,0.000026482145,0.000020858992,0.000021187574],"domain_scores_gemma":[0.99995327,0.000006025148,0.0000138680925,0.000004697942,0.000008214379,0.000013972077],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008991825,0.00034306492,0.00012680134,0.00034817896,0.00030585795,0.00041526038,0.00020588822,0.0002864335,0.0020870017],"category_scores_gemma":[0.000085009255,0.00014355633,0.00023505447,0.00024197892,0.00015918777,0.00019722451,0.00028515447,0.00036250852,0.0008149857],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006090399,0.000009325156,0.0002750736,0.000034943812,0.0000053148237,0.000093530994,0.000011923802,0.000026450378,0.998686,0.00011408417,0.00005915415,0.00062316546],"study_design_scores_gemma":[0.000014668118,0.00006955353,0.049335107,0.000012588699,0.00005425282,0.00087067083,0.00006378981,0.0015056106,0.9390539,0.0001410722,0.008870197,0.000008593208],"about_ca_topic_score_codex":0.0009511001,"about_ca_topic_score_gemma":0.0011026625,"teacher_disagreement_score":0.0020870017,"about_ca_system_score_codex":0.00043158562,"about_ca_system_score_gemma":0.0002004673,"threshold_uncertainty_score":0.006981671},"labels":[],"label_agreement":null},{"id":"W2162311651","doi":"10.1074/mcp.m300021-mcp200","title":"Mass Spectrometric Analysis of Protein Mixtures at Low Levels Using Cleavable 13C-Isotope-coded Affinity Tag and Multidimensional Chromatography","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":295,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; U.S. Public Health Service; National Institutes of Health; Canadian Institute for Theoretical Astrophysics","keywords":"Chromatography; Chemistry; Isotope; Isotope analysis; Mass spectrometry; Stable isotope ratio; Biology","score_opus":0.011907829987741663,"score_gpt":0.2399977323381399,"score_spread":0.22808990235039822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162311651","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4235934,0.0066848034,0.5580284,0.0004926459,0.00023418706,0.0014574012,0.003448639,0.0022550575,0.0038054404],"genre_scores_gemma":[0.30487916,0.0053229984,0.6740385,0.0009380332,0.00008864818,0.0025700063,0.0074765417,0.00066139834,0.004024618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998257,0.0002220774,0.00015426338,0.00042380378,0.00078598916,0.0001568582],"domain_scores_gemma":[0.9988366,0.00033223373,0.00017080134,0.0002023812,0.00030808986,0.00015002492],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013054033,0.0015938893,0.0010838241,0.0031963869,0.000893598,0.0011904853,0.0009644102,0.001047653,0.0010118464],"category_scores_gemma":[0.001555236,0.000541766,0.00065240235,0.0019969903,0.00090334774,0.0008326946,0.00078778533,0.0024820524,0.0011500705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047009464,0.00002656473,0.00019136514,0.000044917786,0.00001591726,0.000040307805,0.000019044399,0.000042320076,0.9972275,0.00010367407,0.00003868169,0.002202826],"study_design_scores_gemma":[0.000019306026,0.00016390994,0.0060374597,0.000016205076,0.000047448702,0.000463496,0.0000364364,0.003120371,0.98725104,0.00030774085,0.0025055653,0.000031011237],"about_ca_topic_score_codex":0.0008946685,"about_ca_topic_score_gemma":0.0021471914,"teacher_disagreement_score":0.0031963869,"about_ca_system_score_codex":0.0008776548,"about_ca_system_score_gemma":0.0011651774,"threshold_uncertainty_score":0.006903708},"labels":[],"label_agreement":null},{"id":"W2162918649","doi":"10.1074/mcp.m700264-mcp200","title":"Quantitative Profiling of Ubiquitylated Proteins Reveals Proteasome Substrates and the Substrate Repertoire Influenced by the Rpn10 Receptor Pathway","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Center for Research Resources; National Institutes of Health; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Ubiquitin; Repertoire; Ubiquitin-Protein Ligases; Proteasome; Receptor; Cell biology; Profiling (computer programming); Chemistry; Computational biology; Biology; Ubiquitin ligase; Biochemistry; Computer science; Gene","score_opus":0.009727109650713944,"score_gpt":0.2337839200246157,"score_spread":0.22405681037390177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162918649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945168,0.0008752535,0.0033617136,0.000024158273,0.0000066765215,0.000016400083,0.0006480728,0.00004579383,0.00050518726],"genre_scores_gemma":[0.99190146,0.0009128564,0.004753085,0.000049225746,0.0000039555453,0.000043962074,0.0011377834,0.000025754558,0.0011719692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979836,0.000025993268,0.000016965272,0.000052985215,0.00006829524,0.000037430982],"domain_scores_gemma":[0.99981934,0.00003822046,0.000052009815,0.000022872657,0.000040269606,0.00002738517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000220821,0.00032828335,0.00030357076,0.00036425726,0.00013615793,0.00042433594,0.00020036047,0.00023466615,0.00046662183],"category_scores_gemma":[0.00022709966,0.00016320865,0.00024318763,0.0003812641,0.00024238626,0.0001913406,0.00017388088,0.00028922182,0.00025100796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057410554,0.000007343499,0.00088685047,0.00001880409,0.0000047097956,0.000018579116,0.000008278114,0.00004625685,0.99824333,0.000016932907,0.000009600812,0.0006818397],"study_design_scores_gemma":[0.0000033907702,0.00012784783,0.052710548,0.0000066032435,0.00001885518,0.00018717167,0.00008167245,0.0017173021,0.9444529,0.00003320885,0.0006516686,0.000008882128],"about_ca_topic_score_codex":0.0010586593,"about_ca_topic_score_gemma":0.0012580875,"teacher_disagreement_score":0.0010586593,"about_ca_system_score_codex":0.0002988133,"about_ca_system_score_gemma":0.00013861657,"threshold_uncertainty_score":0.0021680593},"labels":[],"label_agreement":null},{"id":"W2163323666","doi":"10.1074/mcp.m700478-mcp200","title":"The Identification of Potential Factors Associated with the Development of Type 2 Diabetes","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":199,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Insulin resistance; Endoplasmic reticulum; Internal medicine; Endocrinology; Unfolded protein response; Type 2 diabetes; Insulin; Cell biology; Diabetes mellitus; Medicine","score_opus":0.014491268398342116,"score_gpt":0.20767593140055643,"score_spread":0.19318466300221432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163323666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9780709,0.015684694,0.00283859,0.00026071392,0.0000819214,0.000026454,0.0014080962,0.000083336956,0.0015451864],"genre_scores_gemma":[0.9821623,0.010022282,0.0035826145,0.0002085986,0.00015515457,0.0000396219,0.0018430492,0.00003480395,0.0019516221],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998454,0.000018898483,0.000013149531,0.00005866256,0.00004076739,0.000023162373],"domain_scores_gemma":[0.9996784,0.000036393227,0.00018986412,0.000018373845,0.000030631003,0.000046427143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022996735,0.00042183098,0.00035363456,0.0007659745,0.00019842414,0.00049791875,0.00017460226,0.00033165183,0.0011008683],"category_scores_gemma":[0.00039096933,0.00013302456,0.00033184036,0.0010578145,0.00018113601,0.00026965982,0.00023163891,0.0005618481,0.00027322993],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027282613,0.00023816897,0.28462917,0.00064278895,0.00030434094,0.0019323035,0.00016809475,0.0001891628,0.6658725,0.00065121497,0.0009128704,0.041731168],"study_design_scores_gemma":[0.000013439492,0.0003079652,0.95902807,0.00004365672,0.0001888644,0.002276015,0.00014755025,0.00060252514,0.03205095,0.00035803407,0.0049620965,0.000020816764],"about_ca_topic_score_codex":0.0005140849,"about_ca_topic_score_gemma":0.00040801475,"teacher_disagreement_score":0.0011008683,"about_ca_system_score_codex":0.00019677352,"about_ca_system_score_gemma":0.00013376637,"threshold_uncertainty_score":0.0036827922},"labels":[],"label_agreement":null},{"id":"W2163527113","doi":"10.1074/mcp.m600341-mcp200","title":"Proteomics Discovery of Metalloproteinase Substrates in the Cellular Context by iTRAQ™ Labeling Reveals a Diverse MMP-2 Substrate Degradome","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":232,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Matrix metalloproteinase; Proteomics; Context (archaeology); Substrate (aquarium); Chemistry; Metalloproteinase; Computational biology; Cell biology; Biochemistry; Biology; Gene","score_opus":0.00982316985886293,"score_gpt":0.22171847080637416,"score_spread":0.21189530094751124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163527113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94998026,0.0034440174,0.043818858,0.00027121193,0.00004839578,0.00005779063,0.0006982444,0.0001427044,0.0015386002],"genre_scores_gemma":[0.92278355,0.0038134253,0.068174936,0.0002740071,0.000045508157,0.00011046335,0.0011856251,0.000049170492,0.0035633466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985385,0.00001951522,0.000008752135,0.0000486325,0.000044966044,0.000024399284],"domain_scores_gemma":[0.9998832,0.00003067672,0.000028168695,0.000013022582,0.000022319853,0.000022634656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029124148,0.00035426964,0.0002509924,0.00021462052,0.00021891251,0.0005151218,0.00017267789,0.0003164713,0.0005706332],"category_scores_gemma":[0.00019024654,0.00015801181,0.00025460194,0.00023773227,0.00022561179,0.0003554537,0.00020101163,0.00059273624,0.00035505035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018871637,0.0000034962627,0.00011227615,0.000012286944,0.0000024722235,0.000022808523,0.000006889381,0.000013506929,0.9991566,0.00003835624,0.000014710007,0.0005977731],"study_design_scores_gemma":[0.0000059130894,0.00009399662,0.0055502616,0.0000044224025,0.0000147044275,0.00065589254,0.000030123341,0.0011667847,0.9902172,0.00011249042,0.0021410943,0.0000071002423],"about_ca_topic_score_codex":0.00033206883,"about_ca_topic_score_gemma":0.0008003032,"teacher_disagreement_score":0.0005706332,"about_ca_system_score_codex":0.00024047178,"about_ca_system_score_gemma":0.00016306492,"threshold_uncertainty_score":0.001908958},"labels":[],"label_agreement":null},{"id":"W2164076798","doi":"10.1074/mcp.m700312-mcp200","title":"Defining the Specificity Space of the Human Src Homology 2 Domain","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Axon Guidance and Neuronal Signaling","field":"Neuroscience","cited_by":228,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Western University","funders":"","keywords":"Proto-oncogene tyrosine-protein kinase Src; Homology (biology); Computational biology; Domain (mathematical analysis); Biology; Genetics; Mathematics; Gene; Signal transduction","score_opus":0.015010060378463535,"score_gpt":0.24626595975598703,"score_spread":0.2312558993775235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164076798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92034644,0.0026653523,0.0627474,0.00021134791,0.000035861143,0.000036982066,0.00043844897,0.000099389574,0.013418719],"genre_scores_gemma":[0.9857055,0.00055168645,0.011857321,0.00013316968,0.000016161848,0.000021252963,0.00046301208,0.000014056557,0.0012378468],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99984896,0.000022965334,0.000007526234,0.000043541495,0.000046759065,0.000030323174],"domain_scores_gemma":[0.99987173,0.000041253083,0.000022860924,0.00001404512,0.00002584175,0.000024180974],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020344365,0.00023268217,0.00016040994,0.00030856332,0.00017602766,0.0004790581,0.00024323563,0.00019463786,0.00084016693],"category_scores_gemma":[0.00032329716,0.00015300595,0.00015376092,0.00019374023,0.00030436306,0.0002648929,0.00033678804,0.00039165388,0.00047583075],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019983033,0.000044988396,0.005820804,0.000059578575,0.000008816162,0.00017695597,0.00014001988,0.0024368963,0.9420918,0.018517213,0.0004899905,0.030013025],"study_design_scores_gemma":[0.000055158154,0.000401283,0.024420919,0.000045547447,0.000032748078,0.0024099,0.0002607201,0.02153721,0.88109225,0.018763332,0.050935082,0.000045785626],"about_ca_topic_score_codex":0.0006278827,"about_ca_topic_score_gemma":0.00068032736,"teacher_disagreement_score":0.00084016693,"about_ca_system_score_codex":0.000281739,"about_ca_system_score_gemma":0.00026856427,"threshold_uncertainty_score":0.0028105974},"labels":[],"label_agreement":null},{"id":"W2164524973","doi":"10.1074/mcp.m800231-mcp200","title":"Brain-specific Proteins Decline in the Cerebrospinal Fluid of Humans with Huntington Disease","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of British Columbia; Child and Family Research Institute","funders":"Cure Huntington's Disease Initiative","keywords":"Cerebrospinal fluid; Proteomics; Neurodegeneration; Human brain; Biology; Concordance; Huntington's disease; Pathology; Disease; Neuroscience; Medicine; Bioinformatics; Gene; Genetics","score_opus":0.02267808857177377,"score_gpt":0.23077582132675614,"score_spread":0.20809773275498236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164524973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987282,0.00046707527,0.0003450911,0.000033442066,0.0000043461446,0.0000034804054,0.00024128606,0.0000191313,0.00015781185],"genre_scores_gemma":[0.9978206,0.00028335318,0.0011035479,0.000053360553,0.0000073451797,0.0000064068117,0.0005228549,0.000009829986,0.00019273409],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99976414,0.000034431843,0.000027492591,0.00007288929,0.00007339206,0.000027596352],"domain_scores_gemma":[0.99963915,0.000053718493,0.00015379697,0.00003243521,0.00007439916,0.000046535875],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003157215,0.00032480786,0.0004038783,0.0014582423,0.0002870319,0.0005811395,0.00010373218,0.0003147928,0.00033799346],"category_scores_gemma":[0.00090759515,0.0001547793,0.00018711768,0.00062963256,0.0002578515,0.00020903152,0.00037935472,0.00029447608,0.0001372117],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017250889,0.000094749426,0.33052015,0.00016949195,0.00051912037,0.0017700627,0.0011393436,0.00036507842,0.63577557,0.00014433183,0.00056705513,0.027209966],"study_design_scores_gemma":[0.000014163783,0.00024284425,0.95152354,0.000020663563,0.0001524267,0.002921239,0.00043776963,0.0006514598,0.042165652,0.00033976743,0.0015117686,0.000018700903],"about_ca_topic_score_codex":0.0011520095,"about_ca_topic_score_gemma":0.0013419017,"teacher_disagreement_score":0.0014582423,"about_ca_system_score_codex":0.00017906605,"about_ca_system_score_gemma":0.00013460177,"threshold_uncertainty_score":0.002290666},"labels":[],"label_agreement":null},{"id":"W2164735291","doi":"10.1074/mcp.m112.020164","title":"Driving Forces of Proteasome-catalyzed Peptide Splicing in Yeast and Humans","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Università di Bologna; University of Toronto; Deutsche Forschungsgemeinschaft; Imperial College London","keywords":"Yeast; RNA splicing; Chemistry; Proteasome; Cell biology; Saccharomyces cerevisiae; Peptide; Biochemistry; Biology; Gene; RNA","score_opus":0.009254649309494746,"score_gpt":0.22458036801280357,"score_spread":0.21532571870330883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164735291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97683597,0.0037527112,0.015436269,0.00022774817,0.000024174784,0.00001865195,0.00022828528,0.0002764305,0.003199787],"genre_scores_gemma":[0.9916562,0.00093515776,0.006539199,0.00005048347,0.000008025373,0.000012574206,0.0001910461,0.000021435208,0.0005859545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997955,0.00002800103,0.000013556926,0.00008402965,0.00004942968,0.000029388291],"domain_scores_gemma":[0.99988675,0.000019869944,0.000040067902,0.000014340008,0.000012750145,0.000026180793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030350272,0.00033979013,0.00023755553,0.00019254797,0.00020389436,0.0005907146,0.00026692898,0.00037358972,0.00052557304],"category_scores_gemma":[0.0003247345,0.00024140558,0.0002471101,0.0001662777,0.00035951106,0.00030551926,0.00026906608,0.00028514824,0.00037561258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003734412,0.0000408915,0.006807158,0.00016318615,0.0000291812,0.00062027,0.00021687541,0.004113359,0.9382208,0.022968035,0.00032695069,0.02611977],"study_design_scores_gemma":[0.00007692181,0.00068654335,0.035258055,0.00004247082,0.00007028152,0.0025020342,0.00035679954,0.02482265,0.894101,0.015730947,0.026279325,0.00007295316],"about_ca_topic_score_codex":0.00073498214,"about_ca_topic_score_gemma":0.0004699411,"teacher_disagreement_score":0.00073498214,"about_ca_system_score_codex":0.00050847896,"about_ca_system_score_gemma":0.0002548166,"threshold_uncertainty_score":0.0036892295},"labels":[],"label_agreement":null},{"id":"W2164864818","doi":"10.1074/mcp.m113.030643","title":"Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Center for Research Resources; National Institute of General Medical Sciences; U.S. Public Health Service; National Institutes of Health; National Heart, Lung, and Blood Institute; National Institute of Dental and Craniofacial Research; School of Medicine, Boston University","keywords":"Glycomics; Glycoprotein; Glycan; Computational biology; Mass spectrometry; Prostate cancer; Proteomics; Glycosylation; Biomarker; Glycoproteomics; Chemistry; Biomarker discovery; Bioinformatics; Biology; Cancer; Biochemistry; Chromatography; Genetics","score_opus":0.023513182226978895,"score_gpt":0.3090756849543308,"score_spread":0.2855625027273519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164864818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.972829,0.0010407413,0.017401496,0.00043101367,0.00034012555,0.001325676,0.0018410378,0.0002348775,0.004556071],"genre_scores_gemma":[0.98761344,0.00012794665,0.0073902435,0.0006115034,0.000117913936,0.00072309753,0.0018387027,0.0001279608,0.0014492297],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9507609,0.01936904,0.0032453344,0.009613797,0.015004013,0.0020069333],"domain_scores_gemma":[0.9459532,0.011287137,0.008440628,0.015543713,0.01631551,0.0024597642],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.03956537,0.0010151361,0.00077833293,0.0023366362,0.0016098055,0.0016462518,0.0010043273,0.0012114558,0.0014698305],"category_scores_gemma":[0.032682918,0.00064541516,0.0015768358,0.0020359221,0.0013801431,0.0007436175,0.002343827,0.0015137518,0.0008338769],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006357517,0.002681918,0.8974067,0.00024772467,0.0023030255,0.0005011661,0.0034158078,0.0006228185,0.037828103,0.0011587377,0.003502569,0.043973796],"study_design_scores_gemma":[0.00019479533,0.004394948,0.96040374,0.000037468606,0.0006242065,0.00094906555,0.00076876004,0.0012853876,0.02041702,0.0002673656,0.010553679,0.000103562124],"about_ca_topic_score_codex":0.0042036627,"about_ca_topic_score_gemma":0.0030748304,"teacher_disagreement_score":0.9604346,"about_ca_system_score_codex":0.0015495598,"about_ca_system_score_gemma":0.0019061465,"threshold_uncertainty_score":0.20924419},"labels":[],"label_agreement":null},{"id":"W2164936738","doi":"10.1074/mcp.m111.011700","title":"Peripheral Blood Monocyte-expressed ANXA2 Gene is Involved in Pathogenesis of Osteoporosis in Humans","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"S100 Proteins and Annexins","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; Fogarty International Center; National Institute on Aging; National Institute on Deafness and Other Communication Disorders; Canadian Institutes of Health Research","keywords":"Osteoporosis; Osteoclast; Bone resorption; In vivo; Pathogenesis; Osteoprotegerin; Bone remodeling; Monocyte; Bone density; Bone mineral; Proteomics; Biology; Immunology; Internal medicine; Medicine; Endocrinology; In vitro; Gene; Genetics; Activator (genetics)","score_opus":0.015990227028663477,"score_gpt":0.21129787045487242,"score_spread":0.19530764342620893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164936738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956085,0.0023774914,0.0010171691,0.00007296777,0.0000150973365,0.000008912417,0.00032785168,0.000012866244,0.00055907905],"genre_scores_gemma":[0.99738544,0.0006104431,0.00093134557,0.000044886274,0.000017652119,0.000014031778,0.00025965515,0.0000025416493,0.0007340871],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99983144,0.00004591788,0.0000136260605,0.000051463023,0.00004309149,0.000014427636],"domain_scores_gemma":[0.9998592,0.000024696988,0.000056388424,0.00001534056,0.000024122008,0.000020241565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020755452,0.00021960512,0.00019319916,0.00042399083,0.00024197524,0.00023086017,0.00010872551,0.00023491599,0.0012190291],"category_scores_gemma":[0.00037721495,0.000107522195,0.00015801423,0.00047193197,0.00015474507,0.000058365742,0.00013131235,0.00021271994,0.0001848764],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002604507,0.00018750793,0.6350053,0.0002188307,0.00033943998,0.0015907737,0.00023851184,0.00013170732,0.3388289,0.00040448183,0.00048476426,0.019965239],"study_design_scores_gemma":[0.000024442468,0.00023786296,0.9858155,0.000017164819,0.00009748525,0.0017509193,0.00008532074,0.00029874244,0.009703827,0.00016321131,0.0017997611,0.0000057583834],"about_ca_topic_score_codex":0.0007211019,"about_ca_topic_score_gemma":0.0006515504,"teacher_disagreement_score":0.0012190291,"about_ca_system_score_codex":0.00008084181,"about_ca_system_score_gemma":0.000096944605,"threshold_uncertainty_score":0.00407809},"labels":[],"label_agreement":null},{"id":"W2165045471","doi":"10.1074/mcp.m112.020933","title":"Potentially Novel Candidate Biomarkers for Head and Neck Squamous Cell Carcinoma Identified Using an Integrated Cell Line-based Discovery Strategy","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Head and Neck Cancer Studies","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Ontario Institute for Cancer Research; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Head and neck squamous-cell carcinoma; Biomarker discovery; Proteomics; Human Protein Atlas; Biomarker; Immunohistochemistry; Biology; Transcriptome; Cancer research; Blot; Cancer; Head and neck cancer; Bioinformatics; Gene expression; Gene; Immunology; Protein expression","score_opus":0.030602498953545283,"score_gpt":0.2776999643865638,"score_spread":0.24709746543301853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165045471","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94260746,0.008832853,0.036375146,0.0003608849,0.00010095403,0.00064909994,0.008975635,0.00060961215,0.0014884034],"genre_scores_gemma":[0.8215403,0.007934737,0.13656755,0.0006388028,0.00008806873,0.00067468797,0.029544422,0.000077349934,0.0029341592],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996215,0.000033301218,0.000035261965,0.000103362916,0.00016258557,0.000043990658],"domain_scores_gemma":[0.9996799,0.00005769822,0.00008832303,0.000024626454,0.000118586584,0.000030942683],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007468997,0.00082879554,0.0014661952,0.0015183649,0.00024792427,0.0012637447,0.00047217836,0.0005950442,0.0006757891],"category_scores_gemma":[0.00070495065,0.0002538844,0.0009018896,0.0014292913,0.00017532796,0.00047696123,0.00053660286,0.00051549164,0.0005657756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023258352,0.000110693414,0.0060350304,0.00023924558,0.00010451855,0.00026026045,0.00003326219,0.00049085624,0.9777665,0.000086584325,0.0002629589,0.014377533],"study_design_scores_gemma":[0.00008163135,0.0017584489,0.065348655,0.00007945563,0.0010726909,0.002495818,0.00026371036,0.0241361,0.8903372,0.00048058675,0.013862648,0.000083019884],"about_ca_topic_score_codex":0.0005470101,"about_ca_topic_score_gemma":0.0011293789,"teacher_disagreement_score":0.0015183649,"about_ca_system_score_codex":0.00034766502,"about_ca_system_score_gemma":0.0006582412,"threshold_uncertainty_score":0.0039500594},"labels":[],"label_agreement":null},{"id":"W2165287119","doi":"10.1074/mcp.m800237-mcp200","title":"Genetic Variation Underlying Protein Expression in Eggs of the Marine Mussel Mytilus edulis","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bedford Institute of Oceanography; Fisheries and Oceans Canada","funders":"European Commission","keywords":"Mytilus; Mussel; Biology; Genetic variation; Zoology; Evolutionary biology; Fishery; Genetics; Gene","score_opus":0.0114898085302104,"score_gpt":0.21983939160796886,"score_spread":0.20834958307775847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165287119","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99943393,0.000051814248,0.00022675823,0.000006621404,5.8719667e-7,0.0000015200542,0.00017645907,0.000007345677,0.00009490392],"genre_scores_gemma":[0.9989071,0.000040412866,0.0004521426,0.0000074531767,0.000001019562,0.000006268595,0.00027747228,0.0000069462108,0.00030112037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998815,0.000014149612,0.000012179734,0.00005349631,0.000025947229,0.000012723963],"domain_scores_gemma":[0.999652,0.000085318294,0.00017520192,0.000026743433,0.000035169476,0.000025609846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011142112,0.00012751394,0.00009905444,0.0005517606,0.00013165965,0.00017720024,0.00008940985,0.00017665804,0.00048282003],"category_scores_gemma":[0.00037144954,0.00012166456,0.00015401449,0.00019666566,0.0001815029,0.00009415936,0.00025789207,0.00018390975,0.000088218076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011572314,0.000014454395,0.05318047,0.000032625183,0.000044179265,0.00010142309,0.00016677724,0.0001613785,0.9435128,0.000046856403,0.000021350295,0.002601924],"study_design_scores_gemma":[0.0000020857535,0.000049756476,0.9877194,0.0000021721833,0.000012351701,0.000113299175,0.000050353265,0.00032499988,0.011559084,0.000027218108,0.00013503173,0.0000041555786],"about_ca_topic_score_codex":0.0011603433,"about_ca_topic_score_gemma":0.0022220407,"teacher_disagreement_score":0.0011603433,"about_ca_system_score_codex":0.00018051153,"about_ca_system_score_gemma":0.00007058029,"threshold_uncertainty_score":0.002307117},"labels":[],"label_agreement":null},{"id":"W2165384556","doi":"10.1074/mcp.r400004-mcp200","title":"HUPO Initiatives Relevant to Clinical Proteomics","year":2004,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Proteomics; Computational biology; Library science; Data science; Computer science; Biology; Genetics","score_opus":0.04134999662326405,"score_gpt":0.37014891190208105,"score_spread":0.328798915278817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165384556","genre_codex":"commentary","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003907877,0.02489215,0.033845868,0.5023658,0.06854662,0.0021992892,0.0048707165,0.0066485214,0.35272318],"genre_scores_gemma":[0.041824754,0.048379853,0.12534022,0.2198937,0.04126463,0.0026221694,0.016761193,0.003680531,0.500233],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.98304635,0.004003537,0.00086605345,0.0019133651,0.006962935,0.0032076864],"domain_scores_gemma":[0.91815054,0.0052689104,0.0036588572,0.0062062684,0.020776277,0.045939077],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04067784,0.0017688863,0.00095838134,0.003394684,0.0037959826,0.016341124,0.004343347,0.009003838,0.085438274],"category_scores_gemma":[0.029983774,0.00085083966,0.0013051847,0.0033457584,0.0033741423,0.007625701,0.015354833,0.009395648,0.058717515],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023987323,0.0003432714,0.0013004857,0.00052345934,0.00002660585,0.00036672558,0.00028783976,0.00012373124,0.0019394604,0.0532996,0.8082027,0.13334629],"study_design_scores_gemma":[0.000036191836,0.00007089228,0.0011223855,0.00030914077,0.000006680033,0.00020448417,0.00015457046,0.0001379789,0.0005576439,0.0056217737,0.99176383,0.000014543744],"about_ca_topic_score_codex":0.004391659,"about_ca_topic_score_gemma":0.003993073,"teacher_disagreement_score":0.085438274,"about_ca_system_score_codex":0.0063897315,"about_ca_system_score_gemma":0.0527005,"threshold_uncertainty_score":0.28581953},"labels":[],"label_agreement":null},{"id":"W2166192509","doi":"10.1074/mcp.m111.015487","title":"A Profile of an Endosymbiont-enriched Fraction of the Coral Stylophora pistillata Reveals Proteins Relevant to Microbial-Host Interactions","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Stylophora pistillata; Coral; Host (biology); Anthozoa; Biology; Ecology","score_opus":0.009118684341507262,"score_gpt":0.2199765592781417,"score_spread":0.21085787493663444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166192509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99725986,0.00053315464,0.00089449,0.000027863398,0.0000048352094,0.000009494774,0.00072626985,0.000023006263,0.0005210567],"genre_scores_gemma":[0.9936852,0.00059381867,0.0020486137,0.00008569148,0.000009988302,0.000030773765,0.0020570494,0.000023990438,0.0014647883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999417,0.0000039718275,0.000004276407,0.000020387904,0.000016180786,0.000013386407],"domain_scores_gemma":[0.99989724,0.000015767979,0.000038271035,0.000007702338,0.000016926724,0.000024117657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083967374,0.00043473265,0.00019473402,0.0005687133,0.00024948714,0.0002255492,0.00010780421,0.00028110176,0.0007264668],"category_scores_gemma":[0.00014200753,0.00012207235,0.00023467265,0.00029429703,0.00016021733,0.00021163397,0.00033440575,0.00022936714,0.00024686096],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004165493,0.0000022513889,0.0015478109,0.000023006032,0.0000042019624,0.000047499205,0.000018115787,0.0000092103355,0.9976094,0.000006464954,0.000007205357,0.00068330887],"study_design_scores_gemma":[0.000008124886,0.00042435472,0.60825247,0.000016511629,0.000053785072,0.0014114466,0.0002656191,0.0005502583,0.3864496,0.0000716216,0.0024806084,0.000015668882],"about_ca_topic_score_codex":0.00060699286,"about_ca_topic_score_gemma":0.00081889634,"teacher_disagreement_score":0.0007264668,"about_ca_system_score_codex":0.00013177306,"about_ca_system_score_gemma":0.00012745486,"threshold_uncertainty_score":0.0024302602},"labels":[],"label_agreement":null},{"id":"W2167056206","doi":"10.1074/mcp.m112.019620","title":"Analysis of Intact Monoclonal Antibody IgG1 by Electron Transfer Dissociation Orbitrap FTMS","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":162,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada)","funders":"National Institute of General Medical Sciences; National Institute on Drug Abuse; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Orbitrap; Chemistry; Electron-transfer dissociation; Monoclonal antibody; Dissociation (chemistry); Chromatography; Antibody; Mass spectrometry; Tandem mass spectrometry; Biology; Organic chemistry; Immunology","score_opus":0.005440646941519458,"score_gpt":0.25103897271259057,"score_spread":0.2455983257710711,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167056206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87473685,0.0033378603,0.11444273,0.0002754113,0.00009830634,0.00026388798,0.0022781678,0.0011193319,0.0034474165],"genre_scores_gemma":[0.85479593,0.004112106,0.12815443,0.0007141851,0.000050136012,0.0003687142,0.0045320108,0.00032494598,0.0069476645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954754,0.000041912754,0.00002599842,0.00011242222,0.00018073384,0.000091333706],"domain_scores_gemma":[0.99972624,0.000073049436,0.000049027498,0.000022416709,0.00009842398,0.00003081457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059331756,0.0009938726,0.00045331035,0.0008532038,0.0002872635,0.00044086235,0.000557682,0.000678753,0.0011213126],"category_scores_gemma":[0.0006508004,0.0001795492,0.00041136311,0.0005373483,0.00026988747,0.00031324322,0.00039824515,0.00096801843,0.00056974444],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002595357,0.000019927495,0.00023412833,0.00003789137,0.000010360514,0.00003827394,0.000018844818,0.000058875037,0.99744165,0.000038173843,0.00004914692,0.0020268175],"study_design_scores_gemma":[0.000006877333,0.00011959725,0.004357662,0.000008918333,0.000024806955,0.0001945577,0.00002488712,0.0024407587,0.9907693,0.000082723374,0.0019603802,0.000009594108],"about_ca_topic_score_codex":0.0014840835,"about_ca_topic_score_gemma":0.0015841841,"teacher_disagreement_score":0.0014840835,"about_ca_system_score_codex":0.0005184216,"about_ca_system_score_gemma":0.00050491554,"threshold_uncertainty_score":0.0037614703},"labels":[],"label_agreement":null},{"id":"W2167443016","doi":"10.1074/mcp.m400061-mcp200","title":"Informatics Platform for Global Proteomic Profiling and Biomarker Discovery Using Liquid Chromatography-Tandem Mass Spectrometry","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":206,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Biomarker discovery; Profiling (computer programming); Shotgun proteomics; Proteomics; Computer science; Computational biology; Shotgun; Label-free quantification; Biomarker; Chemistry; Quantitative proteomics; Pattern recognition (psychology); Data mining; Bioinformatics; Artificial intelligence; Biology; Biochemistry","score_opus":0.012766424030527431,"score_gpt":0.25866728446384796,"score_spread":0.24590086043332052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167443016","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0130236335,0.00087890454,0.9464809,0.00054947205,0.00014438,0.00045423987,0.002383464,0.028822707,0.007262171],"genre_scores_gemma":[0.05484938,0.0011632321,0.9235479,0.00040039074,0.0001689283,0.0014641049,0.013326257,0.00090414425,0.0041756164],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887484,0.00027391428,0.000100145284,0.00021065664,0.00043539604,0.00010511092],"domain_scores_gemma":[0.99883837,0.00022919323,0.00012899807,0.00031801916,0.00030511065,0.00018045685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033266877,0.0011657737,0.00097625365,0.0024632718,0.00080953067,0.0019007592,0.0014101302,0.00042040003,0.0032919452],"category_scores_gemma":[0.0018855042,0.00045203054,0.0006899603,0.0014695332,0.00055661733,0.0013193256,0.0018749393,0.0016164267,0.0032271086],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007672399,0.000608923,0.006904004,0.00073252723,0.00029862323,0.00046982896,0.00040052304,0.010885896,0.22156502,0.06256356,0.04969679,0.64510715],"study_design_scores_gemma":[0.0003838876,0.00096903916,0.014019946,0.00034627088,0.0005654369,0.0015811371,0.00023670033,0.21254121,0.3174817,0.06036148,0.39125836,0.00025485986],"about_ca_topic_score_codex":0.001311924,"about_ca_topic_score_gemma":0.0012583936,"teacher_disagreement_score":0.0033266877,"about_ca_system_score_codex":0.0007153204,"about_ca_system_score_gemma":0.002753694,"threshold_uncertainty_score":0.017593384},"labels":[],"label_agreement":null},{"id":"W2167461021","doi":"10.1074/mcp.m800211-mcp200","title":"Plant Defense Responses in Opium Poppy Cell Cultures Revealed by Liquid Chromatography-Tandem Mass Spectrometry Proteomics","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Tandem mass spectrometry; Chromatography; Proteomics; Opium Poppy; Mass spectrometry; Liquid chromatography–mass spectrometry; Chemistry; Poppy; Isobaric labeling; Biology; Papaver; Protein mass spectrometry; Botany; Biochemistry","score_opus":0.007639025529837071,"score_gpt":0.20965502431616706,"score_spread":0.20201599878632998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167461021","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9877928,0.0018294977,0.006581781,0.00013302841,0.000019040117,0.00005382939,0.0024751378,0.00015680962,0.00095802656],"genre_scores_gemma":[0.96547216,0.004073359,0.017846769,0.00024066912,0.000027713939,0.0001880295,0.009372824,0.000059949914,0.0027186265],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999,0.000009371692,0.00000797854,0.000023983912,0.000039977476,0.000018689558],"domain_scores_gemma":[0.99993086,0.000015438278,0.0000149877,0.000009024162,0.000017257154,0.000012404425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013137622,0.00036277107,0.0003471217,0.00035260717,0.00023910619,0.0004121884,0.00017044188,0.00023909274,0.0003343602],"category_scores_gemma":[0.00015974612,0.00013415956,0.00026078869,0.00046704191,0.0001323112,0.00022005342,0.0002482003,0.00037107596,0.00035577442],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003126099,0.0000052535684,0.0001791852,0.000012884489,0.0000024824124,0.00003748343,0.000009508059,0.000014539901,0.9993268,0.000011859722,0.000011833004,0.00035695182],"study_design_scores_gemma":[0.000015887099,0.0001899203,0.0662376,0.000011481252,0.000048353322,0.0008679242,0.00009591971,0.0033272773,0.9253975,0.00013830853,0.0036500378,0.000019804877],"about_ca_topic_score_codex":0.0008287402,"about_ca_topic_score_gemma":0.0010571103,"teacher_disagreement_score":0.0008287402,"about_ca_system_score_codex":0.00025175334,"about_ca_system_score_gemma":0.00019885522,"threshold_uncertainty_score":0.001826644},"labels":[],"label_agreement":null},{"id":"W2167990668","doi":"10.1074/mcp.m112.019026","title":"Proteomic Profiling of the Planarian Schmidtea mediterranea and Its Mucous Reveals Similarities with Human Secretions and Those Predicted for Parasitic Flatworms","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Planarian Biology and Electrostimulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Hospital for Sick Children; Ontario Institute for Cancer Research; University of Toronto","funders":"Canada Research Chairs; Canadian Institutes of Health Research; Hospital for Sick Children; Stowers Institute for Medical Research","keywords":"Planarian; Flatworm; Biology; Proteome; Turbellaria; Planaria; Transcriptome; Proteomics; In silico; Model organism; Computational biology; Zoology; Cell biology; Bioinformatics; Genetics; Regeneration (biology); Gene; Gene expression","score_opus":0.012375376398706735,"score_gpt":0.23951544611910563,"score_spread":0.2271400697203989,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167990668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99766916,0.00080412393,0.00046372248,0.000024364017,0.000003476854,0.000008207645,0.0005764389,0.00001464271,0.00043583123],"genre_scores_gemma":[0.993979,0.00094008405,0.0020977734,0.000033184497,0.000006528025,0.00001407274,0.0018373263,0.000008348675,0.0010836722],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999517,0.0000051815364,0.0000037871603,0.000012754294,0.000015319112,0.00001120425],"domain_scores_gemma":[0.9999453,0.0000059541276,0.000019541327,0.00000299939,0.000010644761,0.000015549544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007464458,0.00036699852,0.00018154114,0.00067138183,0.00019185891,0.00024081088,0.000078605764,0.00015426229,0.00050408073],"category_scores_gemma":[0.00012545566,0.00008218779,0.0002547814,0.00037910108,0.00014405284,0.00016105517,0.00023836302,0.00013721692,0.00015160901],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012678922,0.0000058193473,0.0039092884,0.00005802957,0.00001017198,0.00013402407,0.00004565348,0.000037788446,0.99404484,0.000023855771,0.000019247329,0.001584468],"study_design_scores_gemma":[0.000013520725,0.00071429875,0.75157034,0.0000374642,0.00009874908,0.002859834,0.0007365223,0.0015667713,0.23644854,0.00012615345,0.00580034,0.00002745235],"about_ca_topic_score_codex":0.0009545725,"about_ca_topic_score_gemma":0.0012037507,"teacher_disagreement_score":0.0009545725,"about_ca_system_score_codex":0.00008761697,"about_ca_system_score_gemma":0.0001630845,"threshold_uncertainty_score":0.0018980503},"labels":[],"label_agreement":null},{"id":"W2168027558","doi":"10.1074/mcp.m113.033985","title":"A Temporal Examination of the Planktonic and Biofilm Proteome of Whole Cell Pseudomonas aeruginosa PAO1 Using Quantitative Mass Spectrometry","year":2014,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Guelph","funders":"","keywords":"Pseudomonas aeruginosa; Proteome; Biofilm; Mass spectrometry; Chemistry; Proteomics; Mass spectrometry imaging; Microbiology; Chromatography; Biology; Bacteria; Biochemistry; Genetics","score_opus":0.009014772877530094,"score_gpt":0.21199670492492,"score_spread":0.2029819320473899,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168027558","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853035,0.0009809983,0.009983526,0.00011987167,0.000020142355,0.00003307808,0.0023711561,0.0001556658,0.0010322646],"genre_scores_gemma":[0.9679403,0.0014654042,0.022656115,0.00020692796,0.000034007848,0.00012868804,0.0043211,0.00008641842,0.0031610907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986076,0.000010370874,0.0000062961594,0.000042658885,0.000060348866,0.000019506984],"domain_scores_gemma":[0.99983037,0.000035592017,0.000045320245,0.000012546977,0.000049133243,0.000027109252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022004316,0.0003066831,0.00020928339,0.00044881055,0.00022397068,0.00032950623,0.00018427098,0.00029042462,0.00060551363],"category_scores_gemma":[0.000281046,0.0001436219,0.00020432037,0.0004105864,0.0001932421,0.0002589547,0.000250265,0.00037625086,0.00022075386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049914463,0.00001173875,0.0009794345,0.000035524845,0.000009150644,0.000031798172,0.000033280685,0.000041984553,0.9972898,0.000024822015,0.00004110431,0.0014515303],"study_design_scores_gemma":[0.000008591314,0.0003253673,0.18328497,0.000019333076,0.0000603552,0.0010257467,0.00023742215,0.0066839494,0.8049568,0.00017728351,0.0031840953,0.00003602458],"about_ca_topic_score_codex":0.00093648984,"about_ca_topic_score_gemma":0.00087068474,"teacher_disagreement_score":0.00093648984,"about_ca_system_score_codex":0.00016472615,"about_ca_system_score_gemma":0.000166803,"threshold_uncertainty_score":0.0020256639},"labels":[],"label_agreement":null},{"id":"W2168447402","doi":"10.1016/s1535-9476(20)31954-x","title":"What Has Proteomics Accomplished?","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"","keywords":"Proteomics; Computational biology; Computer science; Chemistry; Biology; Biochemistry","score_opus":0.01567782660482321,"score_gpt":0.25929620595906777,"score_spread":0.24361837935424457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168447402","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006309784,0.38761464,0.006107254,0.5498813,0.039584726,0.000042850275,0.00018652887,0.00023504572,0.015716635],"genre_scores_gemma":[0.033863742,0.48336297,0.0161043,0.39504623,0.055454362,0.00028927965,0.00059111504,0.00037175673,0.014916225],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9662013,0.014300385,0.0022745673,0.0059204185,0.009071541,0.002231692],"domain_scores_gemma":[0.9529189,0.022877237,0.0020483488,0.004404615,0.010729961,0.0070208763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.06551424,0.0022189145,0.002812185,0.0045194426,0.0063649244,0.027341772,0.0026813045,0.012490645,0.010197796],"category_scores_gemma":[0.049926165,0.0011018069,0.0017534565,0.0043744007,0.027779244,0.039278015,0.0091197705,0.022631152,0.008701832],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018855307,0.00009773593,0.0014561508,0.005032186,0.00021529925,0.0002770352,0.0025923986,0.0003166445,0.00092842366,0.3034209,0.44747847,0.23799619],"study_design_scores_gemma":[0.000014744223,0.00007619872,0.00080235384,0.0028051732,0.000024497718,0.00029981002,0.0019199409,0.0001106493,0.0003114151,0.13165194,0.86191946,0.00006379569],"about_ca_topic_score_codex":0.0045054466,"about_ca_topic_score_gemma":0.002616445,"teacher_disagreement_score":0.06551424,"about_ca_system_score_codex":0.010639775,"about_ca_system_score_gemma":0.01839039,"threshold_uncertainty_score":0.34647655},"labels":[],"label_agreement":null},{"id":"W2169204079","doi":"10.1074/mcp.m110.006387","title":"Interpretation of Data Underlying the Link Between Colony Collapse Disorder (CCD) and an Invertebrate Iridescent Virus","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Iridescence; Iridovirus; Biology; Virus; Virology; Ecology","score_opus":0.10851196129118328,"score_gpt":0.29762446659018094,"score_spread":0.18911250529899765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169204079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65473014,0.17499869,0.052434158,0.03472912,0.01012636,0.0011553272,0.031684797,0.00080800266,0.039333455],"genre_scores_gemma":[0.91259015,0.039391436,0.015198631,0.011570286,0.001955388,0.00037772668,0.013877857,0.00011590507,0.004922643],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99738854,0.0005991291,0.00039944434,0.00048847456,0.00095243327,0.00017192352],"domain_scores_gemma":[0.98038965,0.009956423,0.0033959316,0.0019252908,0.0038199585,0.00051275373],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0072704037,0.000628317,0.0007307568,0.0033268488,0.00072348624,0.0015346783,0.0013367803,0.001127356,0.003748409],"category_scores_gemma":[0.016090475,0.00023790235,0.0007933087,0.0017737977,0.0012315577,0.0010167322,0.0010241786,0.0015531353,0.001132363],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008281889,0.0009392216,0.48494694,0.010877665,0.0025156073,0.009755693,0.0024915573,0.00081528723,0.15587316,0.012817973,0.049584128,0.2611009],"study_design_scores_gemma":[0.00021410598,0.0017669894,0.82992387,0.0012972965,0.0016309728,0.013984596,0.0017631314,0.0021242197,0.039328426,0.0145787755,0.09321383,0.00017381976],"about_ca_topic_score_codex":0.0027684395,"about_ca_topic_score_gemma":0.0024440621,"teacher_disagreement_score":0.0072704037,"about_ca_system_score_codex":0.00081861584,"about_ca_system_score_gemma":0.0007787224,"threshold_uncertainty_score":0.038450062},"labels":[],"label_agreement":null},{"id":"W2169730497","doi":"10.1074/mcp.m500255-mcp200","title":"Characterization of an RNA Granule from Developing Brain","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":284,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital; Université de Montréal","funders":"","keywords":"RNA; Computational biology; Granule (geology); Chemistry; Biology; Biochemistry; Gene","score_opus":0.00820966800100082,"score_gpt":0.23769381615093707,"score_spread":0.22948414814993626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169730497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9713306,0.003477939,0.01936947,0.0002773853,0.00009975676,0.00014457288,0.0023718127,0.00023887536,0.0026896659],"genre_scores_gemma":[0.9241161,0.0060208254,0.047615185,0.00030866617,0.00014226545,0.00026397614,0.013496238,0.00028599545,0.0077508655],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999262,0.0000039768374,0.000010147968,0.000023483006,0.000021188378,0.000014974515],"domain_scores_gemma":[0.99970275,0.000046373407,0.00006845935,0.000026091038,0.00007314314,0.0000831314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118939504,0.0004052136,0.0003441753,0.0008058863,0.0002706262,0.0006767703,0.00029240668,0.0002838766,0.000781765],"category_scores_gemma":[0.00030372187,0.00014276853,0.00033542927,0.00037870594,0.00021369838,0.00036183922,0.00034749947,0.0004284759,0.0006903345],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049468894,0.0000072777316,0.00050256547,0.000041214014,0.000005517167,0.00022535065,0.00002562167,0.000013282286,0.9968227,0.00011800882,0.000041041985,0.0021480238],"study_design_scores_gemma":[0.00004219794,0.00045368835,0.087646365,0.00007404373,0.00010558931,0.0054460643,0.00022337765,0.0015594072,0.88452846,0.000702072,0.019196363,0.000022493916],"about_ca_topic_score_codex":0.00081296684,"about_ca_topic_score_gemma":0.0009315441,"teacher_disagreement_score":0.00081296684,"about_ca_system_score_codex":0.0002344555,"about_ca_system_score_gemma":0.00029725168,"threshold_uncertainty_score":0.002615273},"labels":[],"label_agreement":null},{"id":"W2169791190","doi":"10.1074/mcp.m700383-mcp200","title":"Combined Enzymatic and Data Mining Approaches for Comprehensive Phosphoproteome Analyses","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"Phosphatase; Dephosphorylation; Chemistry; Alkaline phosphatase; Phosphorylation; Enzyme; Biochemistry; Cell; Chromatography","score_opus":0.11672597685623981,"score_gpt":0.34514372095259493,"score_spread":0.22841774409635512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169791190","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02617851,0.0028241267,0.9491156,0.00065965723,0.00012401497,0.00089925854,0.0077676526,0.011171395,0.0012599003],"genre_scores_gemma":[0.081336506,0.0014350776,0.9042614,0.0002333238,0.00010042887,0.00084709557,0.011018227,0.0003397347,0.00042824363],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99657416,0.00067394244,0.00071168866,0.0009936107,0.0008916018,0.0001549701],"domain_scores_gemma":[0.9958379,0.0017072516,0.0006222057,0.0006436096,0.00095634756,0.00023265212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0068399995,0.0025732743,0.0025033785,0.010036433,0.0008125911,0.003963482,0.0025125903,0.0012526081,0.0013973289],"category_scores_gemma":[0.007862232,0.00082155375,0.0030285476,0.0063883387,0.0005260534,0.002317651,0.0025449488,0.0022043828,0.0013820924],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011525797,0.0016025611,0.023807164,0.0041205906,0.003223722,0.0019073172,0.0007977719,0.037147366,0.09950955,0.0061765616,0.009872202,0.8106826],"study_design_scores_gemma":[0.00023501045,0.000960462,0.0221339,0.0005617043,0.0018089961,0.0023382602,0.0014810994,0.7768382,0.07565517,0.06850806,0.04903734,0.00044176253],"about_ca_topic_score_codex":0.0013458848,"about_ca_topic_score_gemma":0.0021802816,"teacher_disagreement_score":0.010036433,"about_ca_system_score_codex":0.00057477766,"about_ca_system_score_gemma":0.0018233097,"threshold_uncertainty_score":0.03617382},"labels":[],"label_agreement":null},{"id":"W2171214873","doi":"10.1074/mcp.t600025-mcp200","title":"A Differential Cytolocalization Assay for Analysis of Macromolecular Assemblies in the Eukaryotic Cytoplasm","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of General Medical Sciences","keywords":"Caenorhabditis elegans; RNA interference; Cytoplasm; Biology; Cell biology; Protein–protein interaction; Nonsense-mediated decay; RNA; Gene; Biochemistry","score_opus":0.008205335441602084,"score_gpt":0.22680322212385784,"score_spread":0.21859788668225574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171214873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5265245,0.004506401,0.4592048,0.00046609566,0.00015094364,0.0004044571,0.0015338318,0.0013104092,0.0058985143],"genre_scores_gemma":[0.70008594,0.0027511641,0.28622058,0.00034074436,0.000054698146,0.0007903395,0.0029727835,0.0001975665,0.0065862318],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996443,0.00007658852,0.000032533888,0.00010226592,0.000104807164,0.000039590283],"domain_scores_gemma":[0.99928445,0.00021284098,0.00012060108,0.00013257316,0.00012649593,0.00012307017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050907815,0.0005505161,0.0004000213,0.0009803104,0.00045957285,0.00046552735,0.0006246614,0.00050264015,0.001429375],"category_scores_gemma":[0.0004017659,0.00031920208,0.00032742976,0.0003984717,0.00047615013,0.0004062591,0.0006077804,0.0014331137,0.00092902104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010847778,0.000008684747,0.000079360216,0.000026855627,0.0000026323098,0.000010963033,0.0000051331463,0.000015628875,0.9990952,0.000107907144,0.000023953002,0.0006127633],"study_design_scores_gemma":[0.000010501827,0.000105378094,0.0019603558,0.000007122249,0.0000139158055,0.00030465273,0.000009882268,0.0012337706,0.9938491,0.00008122217,0.002414873,0.000009166892],"about_ca_topic_score_codex":0.00061848114,"about_ca_topic_score_gemma":0.001505041,"teacher_disagreement_score":0.001429375,"about_ca_system_score_codex":0.0005520473,"about_ca_system_score_gemma":0.00029760244,"threshold_uncertainty_score":0.004781723},"labels":[],"label_agreement":null},{"id":"W2171521148","doi":"10.1074/mcp.m112.023291","title":"Quantitative Fragmentome Mapping Reveals Novel, Domain-specific Partners for the Modular Protein RepoMan (Recruits PP1 Onto Mitotic Chromatin at Anaphase)","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Ottawa","funders":"Canadian Institutes of Health Research; Terry Fox Foundation; Ottawa Hospital Research Institute","keywords":"Mitosis; Anaphase; Cell biology; Chromatin; Domain (mathematical analysis); Computational biology; Cohesin; Modular design; Biology; Computer science; Genetics; Cell cycle; DNA; Cell","score_opus":0.024815399726102187,"score_gpt":0.25960255369117474,"score_spread":0.23478715396507255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171521148","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9804606,0.0006253559,0.017399624,0.00006528348,0.000007153666,0.000019413976,0.00052460475,0.000111305504,0.00078671426],"genre_scores_gemma":[0.98143506,0.00037096973,0.014981538,0.00006834083,0.000006588624,0.00002439932,0.00090749754,0.00006389596,0.0021417474],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999149,0.000007993312,0.0000024793362,0.000031899268,0.00002450457,0.000018215374],"domain_scores_gemma":[0.9998714,0.00003012557,0.00004773456,0.000012060879,0.000014267341,0.000024384057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014367574,0.00022880534,0.00014637293,0.00029887713,0.000115013085,0.00025387545,0.00027942902,0.00023618578,0.00094372174],"category_scores_gemma":[0.0001710578,0.0001439813,0.00024590534,0.00013605268,0.00018900116,0.00020681157,0.00021931823,0.00030202657,0.00036210526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003815081,0.0000038875282,0.00017349697,0.000011117701,0.0000025880965,0.000022796601,0.000007627135,0.000047470843,0.998982,0.000058741392,0.000015693564,0.00063637615],"study_design_scores_gemma":[0.000008144092,0.00009118137,0.023221152,0.000003601536,0.000014336712,0.00074596464,0.000041372718,0.0032998268,0.97075135,0.00013623155,0.0016776571,0.000009207727],"about_ca_topic_score_codex":0.0006453478,"about_ca_topic_score_gemma":0.0009474836,"teacher_disagreement_score":0.00094372174,"about_ca_system_score_codex":0.00037265793,"about_ca_system_score_gemma":0.00010595769,"threshold_uncertainty_score":0.0031570792},"labels":[],"label_agreement":null},{"id":"W2171572138","doi":"10.1074/mcp.m500108-mcp200","title":"Novel Src Homology 3 Domain-binding Motifs Identified from Proteomic Screen of a Pro-rich Region","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Computational biology; Proto-oncogene tyrosine-protein kinase Src; Homology (biology); Sequence homology; Chemistry; Biology; Cell biology; Genetics; Peptide sequence; Signal transduction; Gene","score_opus":0.015419277440115725,"score_gpt":0.22705944510302678,"score_spread":0.21164016766291105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171572138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99571854,0.00080364884,0.0018312221,0.000044047618,0.000018116958,0.000022716149,0.00079900055,0.000027953762,0.00073475356],"genre_scores_gemma":[0.9883847,0.00092636043,0.0048011127,0.000099012985,0.000016569627,0.00003543592,0.003104655,0.000018462133,0.002613593],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993,0.000004172645,0.0000043882724,0.000017151802,0.000024822757,0.00001942596],"domain_scores_gemma":[0.99994075,0.000008694543,0.000014014178,0.0000041885814,0.000009582851,0.000022705708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000079953854,0.0003127279,0.00030838687,0.00026644662,0.00015678175,0.0002477331,0.00016941334,0.00029013262,0.0012590709],"category_scores_gemma":[0.00011069211,0.000109871326,0.0003344115,0.00023650422,0.000122992,0.00012645722,0.00017894842,0.0003392887,0.00055896747],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004261205,0.000010062722,0.00036031372,0.000023659684,0.00000489265,0.0001358561,0.00000866406,0.00001054864,0.9987716,0.000016493479,0.000022627635,0.00059263915],"study_design_scores_gemma":[0.000026578195,0.0002822447,0.07894234,0.000012801805,0.00007551636,0.0040011676,0.00010170193,0.0012784748,0.91030556,0.00014484552,0.004813371,0.000015406942],"about_ca_topic_score_codex":0.00027459522,"about_ca_topic_score_gemma":0.0006563306,"teacher_disagreement_score":0.0012590709,"about_ca_system_score_codex":0.00011889597,"about_ca_system_score_gemma":0.00012871381,"threshold_uncertainty_score":0.004211962},"labels":[],"label_agreement":null},{"id":"W2171913440","doi":"10.1074/mcp.d500006-mcp200","title":"Localization, Annotation, and Comparison of the Escherichia coli K-12 Proteome under Two States of Growth","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Proteome; ORFS; Periplasmic space; Escherichia coli; Isoelectric focusing; Biochemistry; Biology; Bacterial outer membrane; Gel electrophoresis; Tandem mass spectrometry; Membrane protein; Proteomics; Isoelectric point; Cell fractionation; Inner membrane; Chemistry; Peptide sequence; Mass spectrometry; Gene; Open reading frame; Chromatography; Enzyme; Membrane","score_opus":0.008542608919887281,"score_gpt":0.25600235911653885,"score_spread":0.24745975019665156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171913440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950323,0.0008230691,0.0023200014,0.00007228161,0.000014763987,0.00001686076,0.0010703487,0.00003154201,0.00061890046],"genre_scores_gemma":[0.97845113,0.0012976958,0.011987615,0.00012627197,0.000009800044,0.00004605362,0.0065650293,0.00004526683,0.0014712366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999874,0.000020074134,0.000015403106,0.000031805557,0.00003605324,0.000022747929],"domain_scores_gemma":[0.99990153,0.000013366849,0.000020232366,0.000011668773,0.000029430596,0.000023723705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001479252,0.00026679412,0.00020944049,0.00040622056,0.00033090395,0.000439796,0.00014464761,0.00016839195,0.00028862376],"category_scores_gemma":[0.00026733088,0.00013083416,0.00024323702,0.00035635434,0.00016185202,0.00026573325,0.00034160574,0.00023834824,0.00028019867],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037764225,0.000028146489,0.0027414765,0.00007033613,0.000010227119,0.00013702016,0.00008008139,0.000051191124,0.99429953,0.000031195996,0.00003946888,0.002133642],"study_design_scores_gemma":[0.000026620137,0.00039657214,0.3939394,0.000027683967,0.000084484214,0.0026193266,0.0008934475,0.0019281699,0.5934794,0.0002330347,0.006336473,0.000035383222],"about_ca_topic_score_codex":0.0013583855,"about_ca_topic_score_gemma":0.0018155678,"teacher_disagreement_score":0.0013583855,"about_ca_system_score_codex":0.00021911318,"about_ca_system_score_gemma":0.00024866668,"threshold_uncertainty_score":0.0027009845},"labels":[],"label_agreement":null},{"id":"W2172080431","doi":"10.1074/mcp.m111.013854","title":"Interlaboratory Evaluation of Automated, Multiplexed Peptide Immunoaffinity Enrichment Coupled to Multiple Reaction Monitoring Mass Spectrometry for Quantifying Proteins in Plasma","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":182,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Victoria","funders":"Argonne National Laboratory; National Cancer Institute; National Institutes of Health; Genome British Columbia; Entertainment Industry Foundation; National Heart, Lung, and Blood Institute; Genome Canada","keywords":"Chromatography; Chemistry; Mass spectrometry; Selected reaction monitoring; Peptide; Tandem mass spectrometry; Biochemistry","score_opus":0.05114284591955586,"score_gpt":0.3075388129444055,"score_spread":0.2563959670248496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172080431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83639854,0.0019027027,0.15410355,0.00035612707,0.000226219,0.0020718372,0.0013513141,0.0019052903,0.0016844044],"genre_scores_gemma":[0.8237217,0.00064486754,0.16731274,0.0009231479,0.00015299412,0.002560457,0.0025074873,0.00038617343,0.0017905215],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9566123,0.0146520585,0.0018339622,0.009881409,0.016306154,0.00071407814],"domain_scores_gemma":[0.9851901,0.004303564,0.0024854667,0.0026108932,0.004800979,0.0006090043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.026082942,0.0017138532,0.0011792515,0.0019375529,0.0012843615,0.0022424445,0.001987954,0.0019362487,0.00064531615],"category_scores_gemma":[0.0235475,0.0011349904,0.0009106793,0.0016424608,0.0020175204,0.00060210907,0.002049098,0.0010495016,0.00059300376],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004966442,0.0021881321,0.024751244,0.00047313693,0.0012793229,0.00018425437,0.0018303812,0.0088859275,0.90307355,0.000535092,0.0009794434,0.05085309],"study_design_scores_gemma":[0.0009615468,0.017066214,0.11732752,0.00013161746,0.0013438783,0.0012167246,0.0005149627,0.06762347,0.7834492,0.0010354954,0.0088763535,0.00045306713],"about_ca_topic_score_codex":0.0027437026,"about_ca_topic_score_gemma":0.0031230028,"teacher_disagreement_score":0.026082942,"about_ca_system_score_codex":0.0013618681,"about_ca_system_score_gemma":0.0027621908,"threshold_uncertainty_score":0.13794148},"labels":[],"label_agreement":null},{"id":"W2172721945","doi":"10.1074/mcp.o115.049957","title":"Multiple Reaction Monitoring Enables Precise Quantification of 97 Proteins in Dried Blood Spots","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biosimilars and Bioanalytical Methods","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Victoria","funders":"","keywords":"Dried blood; Spots; Chromatography; Chemistry","score_opus":0.042979629438320094,"score_gpt":0.2689062182088691,"score_spread":0.22592658877054902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172721945","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48006907,0.0144851655,0.49074945,0.0008774435,0.0005304265,0.0006033733,0.0024665443,0.0037483475,0.006470088],"genre_scores_gemma":[0.47214776,0.009784691,0.505715,0.0010355831,0.00022881968,0.00087539636,0.0027164707,0.00033427545,0.007162102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9945057,0.0010549333,0.0002567701,0.0016762232,0.0022992955,0.00020708189],"domain_scores_gemma":[0.99891627,0.00036763895,0.0002582377,0.00008881197,0.0002806471,0.00008835486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033098685,0.0016209162,0.0011220436,0.0013643854,0.00039178322,0.0013512309,0.0011635033,0.0013359688,0.0010456423],"category_scores_gemma":[0.002944464,0.0006591644,0.0006696899,0.0011198454,0.00076316175,0.00078498945,0.0010391304,0.00158359,0.0013259004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018106532,0.00006990709,0.0008209375,0.00014593084,0.000045372177,0.00008459534,0.000042561474,0.00019389919,0.9754953,0.00021996647,0.00041898564,0.02228147],"study_design_scores_gemma":[0.000023513374,0.00024964171,0.0031000043,0.000024223706,0.00004789474,0.0006836449,0.000025822666,0.005546147,0.9864991,0.0002868734,0.0034836326,0.00002960414],"about_ca_topic_score_codex":0.00031807504,"about_ca_topic_score_gemma":0.00058577687,"teacher_disagreement_score":0.0033098685,"about_ca_system_score_codex":0.00051610917,"about_ca_system_score_gemma":0.00047007928,"threshold_uncertainty_score":0.017504513},"labels":[],"label_agreement":null},{"id":"W2173466864","doi":"10.1074/mcp.m115.048967","title":"Prediction of Recurrence and Survival for Triple-Negative Breast Cancer (TNBC) by a Protein Signature in Tissue Samples","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Cancer Research","keywords":"Triple-negative breast cancer; Breast cancer; Oncology; Signature (topology); Internal medicine; Medicine; Cancer research; Cancer; Mathematics","score_opus":0.020543463976079708,"score_gpt":0.2678030960104018,"score_spread":0.2472596320343221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2173466864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990683,0.00025333415,0.00035333654,0.000013737494,0.000002324221,0.000005684389,0.00019548701,0.0000074531927,0.0001002987],"genre_scores_gemma":[0.9984243,0.00015521162,0.00064592366,0.000009026597,0.000004898613,0.000009361824,0.0006448927,0.0000019545787,0.00010450799],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998325,0.00003739986,0.000024729185,0.00004011417,0.000038323888,0.000026871885],"domain_scores_gemma":[0.99970394,0.00007881849,0.00009952024,0.000025621046,0.00004907917,0.000042989748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004945966,0.00019819553,0.00034335157,0.0007763396,0.0001584885,0.0003437431,0.000114167015,0.00021321724,0.00039047355],"category_scores_gemma":[0.00084218,0.00009184445,0.00020206874,0.00050760293,0.00011606977,0.00015425083,0.00019327323,0.00015467146,0.00017323234],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000929756,0.00006251022,0.8788377,0.000064917214,0.00009461942,0.00040289047,0.000117364936,0.00047601777,0.103581786,0.000033323522,0.00018427541,0.015214798],"study_design_scores_gemma":[0.000009095339,0.00036736266,0.98340476,0.0000058678634,0.00011009083,0.0016284239,0.000114830495,0.0023834142,0.011540622,0.00005949629,0.0003701039,0.000005924306],"about_ca_topic_score_codex":0.00087664265,"about_ca_topic_score_gemma":0.0012323351,"teacher_disagreement_score":0.00087664265,"about_ca_system_score_codex":0.00013912651,"about_ca_system_score_gemma":0.00015947233,"threshold_uncertainty_score":0.0026157498},"labels":[],"label_agreement":null},{"id":"W2175041624","doi":"10.1074/mcp.m115.053520","title":"Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Seventh Framework Programme; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Michael Smith Health Research BC","keywords":"Cell biology; Matrix metalloproteinase; MMP1; Extracellular matrix; Chemistry; Biology; Biochemistry; Gene expression","score_opus":0.01062687812966964,"score_gpt":0.2317581311606145,"score_spread":0.22113125303094486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2175041624","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881832,0.0016749551,0.008485766,0.000033041382,0.000016306116,0.000026493299,0.00044561908,0.000040466748,0.001094232],"genre_scores_gemma":[0.9822662,0.0017866067,0.013018856,0.00006988384,0.000012084562,0.000047180634,0.0006097836,0.0000321387,0.0021573168],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999424,0.000006783906,0.0000029790901,0.000017126926,0.000015709584,0.00001495773],"domain_scores_gemma":[0.9999454,0.000010178539,0.000013305914,0.000006774345,0.000009541192,0.000014746914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012087684,0.0002341182,0.00012237467,0.00020965748,0.000104497536,0.00022649202,0.000084737396,0.00019558404,0.00053868495],"category_scores_gemma":[0.000078155885,0.000108820714,0.00016398581,0.00011910669,0.00013176604,0.00017284873,0.00015574353,0.00027664754,0.00023865979],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003113088,0.0000028635504,0.00032908292,0.000012558834,0.0000015382542,0.000020470115,0.000007214291,0.000010529437,0.9990883,0.000018490298,0.000005074431,0.00047280185],"study_design_scores_gemma":[0.0000038176095,0.00012658737,0.0368582,0.000007690764,0.000015414573,0.00060235756,0.00007750147,0.0009621705,0.95975304,0.00011030917,0.0014769504,0.0000060301045],"about_ca_topic_score_codex":0.00030512427,"about_ca_topic_score_gemma":0.00054657157,"teacher_disagreement_score":0.00053868495,"about_ca_system_score_codex":0.0001345906,"about_ca_system_score_gemma":0.00010988265,"threshold_uncertainty_score":0.0018020272},"labels":[],"label_agreement":null},{"id":"W2176134948","doi":"10.1074/mcp.m115.050724","title":"The Human Tau Interactome: Binding to the Ribonucleoproteome, and Impaired Binding of the Proline-to-Leucine Mutant at Position 301 (P301L) to Chaperones and the Proteasome","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Occupational Cancer Research Centre","funders":"Canadian Institutes of Health Research","keywords":"Interactome; Proteostasis; Proteome; Cell biology; Biology; Proteasome; Progressive supranuclear palsy; Chaperone (clinical); Mutant; Frontotemporal dementia; Ribonucleoprotein; Biochemistry; Chemistry; RNA; Genetics; Dementia","score_opus":0.01727471138551399,"score_gpt":0.27596763173167155,"score_spread":0.25869292034615754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2176134948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970824,0.0008362694,0.0011394755,0.00007271596,0.0000133454805,0.000017444609,0.00036703786,0.00003644795,0.00043476437],"genre_scores_gemma":[0.99493176,0.0004665735,0.0015356328,0.00007288382,0.000016114755,0.000036459835,0.001102263,0.000016879343,0.0018213617],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999876,0.00001616831,0.000010016371,0.000034501503,0.00004384185,0.000019415336],"domain_scores_gemma":[0.99992347,0.000012696823,0.0000261362,0.000008914896,0.000008440156,0.000020349538],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011574206,0.000396682,0.00024636037,0.00023299297,0.00019442363,0.0002092872,0.00011136738,0.00028219787,0.0005201386],"category_scores_gemma":[0.00010548468,0.00013533728,0.00021120886,0.00013703307,0.00016075936,0.00010689348,0.0001256284,0.00026194696,0.00028900075],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007959087,0.000012312383,0.00019213723,0.000014555968,0.0000048041106,0.00011321404,0.00000939743,0.000028278011,0.9992411,0.000014715672,0.00002160775,0.00026844276],"study_design_scores_gemma":[0.000014120815,0.00032868516,0.035342954,0.0000068349473,0.000037910075,0.0019692422,0.000035918634,0.0017618369,0.9591274,0.00009997504,0.0012671332,0.000007911811],"about_ca_topic_score_codex":0.0007822914,"about_ca_topic_score_gemma":0.0013374125,"teacher_disagreement_score":0.0007822914,"about_ca_system_score_codex":0.0002972018,"about_ca_system_score_gemma":0.00014543816,"threshold_uncertainty_score":0.0021563768},"labels":[],"label_agreement":null},{"id":"W2176750505","doi":"10.1074/mcp.m115.053934","title":"The Extracellular Vesicles of the Helminth Pathogen, Fasciola hepatica: Biogenesis Pathways and Cargo Molecules Involved in Parasite Pathogenesis*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Helminth infection and control","field":"Veterinary","cited_by":246,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital","funders":"Biotechnology and Biological Sciences Research Council; Instituto de Salud Carlos III; Universitat de València","keywords":"Fasciola hepatica; Extracellular vesicles; Biogenesis; Parasite hosting; Pathogenesis; Biology; Extracellular; Helminths; Fasciola; Cell biology; Pathogen; Microbiology; Immunology; Biochemistry","score_opus":0.03479594604329975,"score_gpt":0.24872544155754592,"score_spread":0.21392949551424617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2176750505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9631353,0.024473581,0.0080518825,0.000370515,0.000032005224,0.000042723703,0.0016496215,0.000086942826,0.0021573768],"genre_scores_gemma":[0.987061,0.005089416,0.0044067227,0.00005219398,0.000015618107,0.000022555714,0.0015974718,0.000013946837,0.001741045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999349,0.00000987064,0.0000058262376,0.000017723369,0.000011300803,0.0000203735],"domain_scores_gemma":[0.99991584,0.000013230525,0.000032986864,0.000005878999,0.000016018328,0.000016059643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014807364,0.00037009484,0.00015819498,0.0003152,0.00024976514,0.0005012751,0.00009559798,0.00031461517,0.00041649668],"category_scores_gemma":[0.000118666714,0.00008859188,0.0001756876,0.00019867082,0.00017959371,0.00043663254,0.00028416363,0.00017908071,0.00024651238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001322938,0.0000079492265,0.0028620083,0.00018823086,0.0000067049214,0.0001531648,0.00004467721,0.00011108894,0.98989433,0.00026287066,0.000054378095,0.006282299],"study_design_scores_gemma":[0.000012352275,0.00025452516,0.18363361,0.000121339246,0.000059890306,0.0029863631,0.00040449595,0.0021454284,0.7932377,0.0008768946,0.016236667,0.00003072413],"about_ca_topic_score_codex":0.00055340753,"about_ca_topic_score_gemma":0.00062170386,"teacher_disagreement_score":0.00055340753,"about_ca_system_score_codex":0.0002726933,"about_ca_system_score_gemma":0.00016243936,"threshold_uncertainty_score":0.0019785166},"labels":[],"label_agreement":null},{"id":"W2179906156","doi":"10.1074/mcp.o115.049791","title":"QuantFusion: Novel Unified Methodology for Enhanced Coverage and Precision in Quantifying Global Proteomic Changes in Whole Tissues","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Stable isotope labeling by amino acids in cell culture; Label-free quantification; Quantitative proteomics; Proteome; Peptide; Computational biology; Quantitative analysis (chemistry); Biology; Proteomics; Bioinformatics; Chemistry; Biochemistry; Chromatography; Gene","score_opus":0.08666380207549894,"score_gpt":0.3525517767235272,"score_spread":0.26588797464802827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2179906156","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029698435,0.0007131411,0.96466887,0.00013115251,0.00007960563,0.0001848066,0.0005590957,0.0031875246,0.000777398],"genre_scores_gemma":[0.09800274,0.00091720716,0.8965777,0.00026928447,0.00008882269,0.0010350492,0.00093089783,0.00075490976,0.0014234297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964439,0.00075416814,0.00017943702,0.00087045535,0.0015731815,0.0001787562],"domain_scores_gemma":[0.99780506,0.00073644455,0.0005056648,0.00048616258,0.00036622485,0.00010040782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0063259928,0.0014280425,0.0017091542,0.0022002428,0.00060368946,0.0018324361,0.0027777823,0.0011266002,0.001596676],"category_scores_gemma":[0.003214809,0.0012430263,0.0009875868,0.00138884,0.0016810194,0.002053171,0.0029268542,0.0028680312,0.0006473239],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002046957,0.00008283794,0.0010574284,0.0002996684,0.00010262929,0.00010021957,0.00016751862,0.0018760418,0.9444328,0.0041705947,0.0011509962,0.046354514],"study_design_scores_gemma":[0.000037977054,0.00035709213,0.0035338656,0.00004648061,0.000080917096,0.00076510635,0.000057667316,0.06723063,0.9138574,0.002503182,0.011360682,0.00016894224],"about_ca_topic_score_codex":0.0006243632,"about_ca_topic_score_gemma":0.0012793806,"teacher_disagreement_score":0.0063259928,"about_ca_system_score_codex":0.0008955534,"about_ca_system_score_gemma":0.0012786564,"threshold_uncertainty_score":0.03345543},"labels":[],"label_agreement":null},{"id":"W2214549326","doi":"10.1074/mcp.m115.055509","title":"Application of Mass Spectrometry Profiling to Establish Brusatol as an Inhibitor of Global Protein Synthesis","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genomics, phytochemicals, and oxidative stress","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"","keywords":"KEAP1; Chemistry; Cytotoxicity; Intracellular; Oxidative stress; Cell culture; A549 cell; Cell growth; Cell; Biochemistry; Cell biology; Cancer research; Biology; Transcription factor; In vitro; Gene","score_opus":0.007975006970183447,"score_gpt":0.23986451493495636,"score_spread":0.23188950796477292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2214549326","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9449121,0.0069812443,0.04037469,0.00025033267,0.00011447968,0.00022734326,0.0022975467,0.0005413558,0.004300858],"genre_scores_gemma":[0.94979537,0.0048278603,0.036379315,0.0002852783,0.00004343675,0.00016811464,0.0024507293,0.00013978258,0.0059099537],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998259,0.000021437256,0.0000108315335,0.00005760619,0.0000527406,0.000031569412],"domain_scores_gemma":[0.9997886,0.000045515426,0.00005020539,0.000023643108,0.000065583234,0.000026585903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020241468,0.0006715923,0.00035042843,0.00081511616,0.00026542458,0.00034687095,0.00023102225,0.0005144802,0.0012129702],"category_scores_gemma":[0.0003000394,0.00020734387,0.00046137095,0.0005559463,0.00027371332,0.00039662642,0.00023104735,0.00062391016,0.0004599329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008906779,0.00001243824,0.0001647008,0.000024456996,0.000009690062,0.000025957213,0.00001070976,0.00006152483,0.99845064,0.000030211278,0.000018508055,0.0011021689],"study_design_scores_gemma":[0.0000054936972,0.00014258464,0.0021907978,0.0000038416874,0.000018200792,0.00011985335,0.000020014095,0.0011070677,0.99505025,0.000039863822,0.0012958564,0.000006267206],"about_ca_topic_score_codex":0.0007535729,"about_ca_topic_score_gemma":0.001102272,"teacher_disagreement_score":0.0012129702,"about_ca_system_score_codex":0.00030647236,"about_ca_system_score_gemma":0.0002663349,"threshold_uncertainty_score":0.0040578246},"labels":[],"label_agreement":null},{"id":"W2224593426","doi":"10.1074/mcp.m114.045658","title":"BioID-based Identification of Skp Cullin F-box (SCF)β-TrCP1/2 E3 Ligase Substrates*","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":196,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Princess Margaret Cancer Centre; University Health Network","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Cullin; Ubiquitin ligase; Ubiquitin; MG132; Ubiquitin-Protein Ligases; Cell biology; Proteasome; Chemistry; Computational biology; Biology; Biochemistry; Gene","score_opus":0.01719647382904076,"score_gpt":0.2404434642397085,"score_spread":0.22324699041066773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2224593426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9227795,0.0056133717,0.059320554,0.00049539085,0.00011279936,0.00022470774,0.006729227,0.0006904107,0.00403419],"genre_scores_gemma":[0.88679415,0.003775886,0.08855471,0.00037046464,0.00003983128,0.00025831565,0.013070517,0.00022323994,0.0069128787],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997296,0.000033944278,0.000021848584,0.00007896106,0.00008555437,0.000050112358],"domain_scores_gemma":[0.99976546,0.000041999763,0.000050828345,0.000023648423,0.000060465067,0.000057730515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026003714,0.0007551724,0.00041974772,0.0011842912,0.00038487263,0.00060774514,0.00038047676,0.0004788935,0.0018083939],"category_scores_gemma":[0.00034901776,0.00018410292,0.00031445024,0.0006373768,0.00024691154,0.00037932687,0.00032562454,0.0005012581,0.0012718962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059167993,0.000009646647,0.00042142058,0.00004402896,0.000006981357,0.00005673203,0.000010015536,0.00003091087,0.99793893,0.000047180212,0.00006786847,0.0013071389],"study_design_scores_gemma":[0.0000061433457,0.00006249675,0.006180724,0.000007011874,0.000013817215,0.0005426253,0.000039550254,0.0016655519,0.9886335,0.000057301582,0.0027834445,0.000007852065],"about_ca_topic_score_codex":0.000823802,"about_ca_topic_score_gemma":0.0018439972,"teacher_disagreement_score":0.0018083939,"about_ca_system_score_codex":0.00061908585,"about_ca_system_score_gemma":0.00029857212,"threshold_uncertainty_score":0.0060496926},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"}],"label_agreement":"agree"},{"id":"W2280948563","doi":"10.1074/mcp.m115.053298","title":"Comparative Phosphoproteomics Analysis of VEGF and Angiopoietin-1 Signaling Reveals ZO-1 as a Critical Regulator of Endothelial Cell Proliferation","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Angiogenesis and VEGF in Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Clinical Research Institute; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Angiogenesis; Cell biology; Signal transduction; Regulator; Angiopoietin; Vascular endothelial growth factor; Phosphorylation; Phosphoproteomics; Biology; Cell signaling; Chemistry; Protein kinase A; Cancer research; Protein phosphorylation; VEGF receptors; Biochemistry","score_opus":0.009920193625834139,"score_gpt":0.2581656300257293,"score_spread":0.24824543639989516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2280948563","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99155563,0.0030506894,0.0038806398,0.00009461462,0.000015702277,0.000014793525,0.000702114,0.00003033718,0.0006555563],"genre_scores_gemma":[0.9888228,0.0019566314,0.0064479304,0.000082208164,0.000011834944,0.000028193215,0.0014476036,0.000013278573,0.0011896448],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993324,0.000006346999,0.0000033779359,0.000022847595,0.000017917282,0.000016317248],"domain_scores_gemma":[0.99995875,0.0000044413127,0.000013761978,0.0000025261304,0.0000064871047,0.000014098603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011083089,0.0003199769,0.00021024702,0.00039733085,0.00020632331,0.00022515621,0.00018772975,0.0002275507,0.00076554395],"category_scores_gemma":[0.00008709218,0.00012017886,0.0002641653,0.00031299188,0.00015145483,0.00036498232,0.00018687395,0.00029050687,0.00013881219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000686623,0.0000056423078,0.00029847538,0.000030699477,0.0000066295665,0.00002197972,0.000007661655,0.000025526138,0.9987068,0.000053262167,0.000016278049,0.0007583025],"study_design_scores_gemma":[0.000020828165,0.00020482573,0.11965782,0.000013004109,0.00010198495,0.0009920807,0.0000869085,0.0032450245,0.87202007,0.00035021355,0.00329224,0.000015039524],"about_ca_topic_score_codex":0.0006086804,"about_ca_topic_score_gemma":0.0008088347,"teacher_disagreement_score":0.00076554395,"about_ca_system_score_codex":0.00018979322,"about_ca_system_score_gemma":0.00015746463,"threshold_uncertainty_score":0.0025609732},"labels":[],"label_agreement":null},{"id":"W2299276272","doi":"10.1074/mcp.e110.007468","title":"Technology Development: an Overview","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Proteomics; Computational biology; Data science; Proteome; Human proteome project; Computer science; Chemistry; Nanotechnology; Library science; Biology; Biochemistry","score_opus":0.013167828052072767,"score_gpt":0.2570641423441806,"score_spread":0.24389631429210787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2299276272","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010851852,0.960581,0.009911211,0.0044843047,0.0013260642,0.00014466155,0.00012031342,0.00016612915,0.02218105],"genre_scores_gemma":[0.0035622981,0.98049957,0.00935857,0.0017277859,0.0007308573,0.00015043654,0.00019678245,0.000030263449,0.0037434902],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99785477,0.00041752684,0.00024760838,0.00032963557,0.0009493175,0.00020100664],"domain_scores_gemma":[0.9980415,0.0009660953,0.00016064057,0.00007691742,0.00055615604,0.0001986376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0043611685,0.0022937146,0.0012938399,0.0067563658,0.00094780733,0.005914575,0.00201901,0.0038274731,0.005570271],"category_scores_gemma":[0.0029596514,0.00090809545,0.00091646786,0.0061686058,0.0013116522,0.008327623,0.002545168,0.0032764426,0.0064102076],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010701087,0.0002191219,0.0010521713,0.0092821475,0.00007001059,0.00051222526,0.00021082656,0.0013381521,0.0026863562,0.029980907,0.03684914,0.9176919],"study_design_scores_gemma":[0.000017644366,0.00023561524,0.0009321404,0.0041350145,0.0000471547,0.0015326134,0.00021899452,0.0005770028,0.0014377539,0.017862098,0.9729518,0.000052059775],"about_ca_topic_score_codex":0.0016418431,"about_ca_topic_score_gemma":0.0009812588,"teacher_disagreement_score":0.0067563658,"about_ca_system_score_codex":0.0026066615,"about_ca_system_score_gemma":0.0034330166,"threshold_uncertainty_score":0.023064315},"labels":[],"label_agreement":null},{"id":"W2303451292","doi":"10.1074/mcp.m116.058016","title":"Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Ontario Council on Graduate Studies, Council of Ontario Universities; Foundation for the National Institutes of Health; Thermo Fisher Scientific; National Heart, Lung, and Blood Institute; Thermo Scientific","keywords":"Glycomics; Glycan; Glycobiology; Biology; Glycosylation; Innate immune system; Influenza A virus; Immune system; Computational biology; Glycoprotein; Virus; Virology; Genetics","score_opus":0.014977970043629671,"score_gpt":0.2790078256211221,"score_spread":0.2640298555774924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2303451292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88237,0.0019722348,0.10034335,0.0023904382,0.00012307908,0.00008698472,0.0034852088,0.0017195338,0.007509182],"genre_scores_gemma":[0.96743613,0.0008653109,0.0288774,0.0002243822,0.000044477678,0.00008356714,0.001836524,0.00013686533,0.0004953288],"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998865,0.00003430779,0.000006378589,0.000025538384,0.000025809844,0.000021335392],"domain_scores_gemma":[0.9997975,0.00009853554,0.000024912377,0.000026718211,0.000025737865,0.000026583735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004346009,0.00070867926,0.00080856576,0.000717752,0.00063091685,0.0014175402,0.0006381095,0.0009369923,0.0014432556],"category_scores_gemma":[0.0008269473,0.0004686753,0.0012571051,0.00064773957,0.0004947973,0.00092007336,0.00066709635,0.00079914293,0.00023936783],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023212157,0.00014751422,0.012777444,0.00018957899,0.0003645793,0.00017638411,0.00011252844,0.96017003,0.009157864,0.0074323053,0.0011114985,0.00812809],"study_design_scores_gemma":[0.000008849607,0.000010525737,0.0014940578,0.000004037312,0.00001748128,0.000010266095,0.000022357233,0.99375594,0.00036022405,0.004019688,0.00029141552,0.000005241429],"about_ca_topic_score_codex":0.0101945605,"about_ca_topic_score_gemma":0.007659794,"teacher_disagreement_score":0.0101945605,"about_ca_system_score_codex":0.00083854934,"about_ca_system_score_gemma":0.0011650444,"threshold_uncertainty_score":0.020270467},"labels":[],"label_agreement":null},{"id":"W2314170505","doi":"10.1074/mcp.m115.057257","title":"Dynamics of Protein Expression Reveals Primary Targets and Secondary Messengers of Estrogen Receptor Alpha Signaling in MCF-7 Breast Cancer Cells","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Estrogen and related hormone effects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research","keywords":"MCF-7; Estrogen receptor alpha; Second messenger system; Estrogen receptor; Cancer research; Alpha (finance); Breast cancer; Signal transduction; Primary (astronomy); Messenger RNA; Estrogen receptor beta; Estrogen; Dynamics (music); Cancer; Biology; Cell biology; Chemistry; Endocrinology; Human breast; Medicine; Gene; Genetics; Psychology; Physics","score_opus":0.0025219999714326236,"score_gpt":0.19256340667518,"score_spread":0.19004140670374736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2314170505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798233,0.0034258629,0.008915472,0.0001654244,0.000033162465,0.000029991694,0.005185781,0.0001944371,0.002226499],"genre_scores_gemma":[0.96146446,0.005078355,0.016415695,0.0001970354,0.000029821866,0.00015475121,0.010228655,0.000113231144,0.0063180234],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990153,0.000007863686,0.000006050413,0.000029819714,0.000036071604,0.000018567893],"domain_scores_gemma":[0.99994326,0.000011808356,0.000009844417,0.0000051795064,0.000018710465,0.000011159315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011458353,0.00024247548,0.00029356842,0.0003791132,0.00020861282,0.0002604942,0.00014320413,0.00018950859,0.00058380933],"category_scores_gemma":[0.00009075496,0.00012539238,0.00017512646,0.00054598105,0.000120920995,0.00016779348,0.0001214008,0.0002691079,0.00045427092],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041182135,0.000005583669,0.0002273863,0.000019449537,0.0000034379489,0.000020697667,0.000015516138,0.00003492923,0.9990274,0.000023127646,0.00004224076,0.00053902797],"study_design_scores_gemma":[0.000009849482,0.000085009,0.03759861,0.0000066889056,0.00002753933,0.00024230324,0.00008068518,0.0020114079,0.9561924,0.00007993301,0.0036536388,0.000011972337],"about_ca_topic_score_codex":0.0015188335,"about_ca_topic_score_gemma":0.0019852312,"teacher_disagreement_score":0.0015188335,"about_ca_system_score_codex":0.00033881466,"about_ca_system_score_gemma":0.0001491381,"threshold_uncertainty_score":0.0030199885},"labels":[],"label_agreement":null},{"id":"W2325430435","doi":"10.1074/mcp.m115.051920","title":"Nucleolar Enrichment of Brain Proteins with Critical Roles in Human Neurodevelopment","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Spinal Cord Injury BC","funders":"National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences; European Regional Development Fund; National Science Foundation; Eesti Teadusagentuur; National Institutes of Health; Eesti Teaduste Akadeemia","keywords":"Chemistry; Human brain; Neuroscience; Computational biology; Cell biology; Biology","score_opus":0.007455916043304376,"score_gpt":0.22784110496745558,"score_spread":0.2203851889241512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2325430435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97436464,0.014094195,0.0051475447,0.00014467804,0.000029644088,0.0000324963,0.003697022,0.00014865928,0.0023410309],"genre_scores_gemma":[0.9772938,0.005730895,0.008340149,0.00008668603,0.000020542526,0.00007013838,0.005999334,0.000043721866,0.002414744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992883,0.0000069451307,0.0000042608417,0.000022434962,0.00002017577,0.000017303888],"domain_scores_gemma":[0.99993193,0.000011152954,0.000022569284,0.00000508507,0.000015261767,0.000014026303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013785363,0.0002443707,0.00021968344,0.00089179655,0.00023570617,0.00024058577,0.000119204175,0.0001626286,0.0015636472],"category_scores_gemma":[0.00012625095,0.00008460538,0.00022473949,0.00057132385,0.00015220737,0.000121855555,0.00023707065,0.00019245748,0.00038358953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002968518,0.000013722217,0.0039816424,0.00020947133,0.000057418794,0.00032446647,0.000047001486,0.000049719747,0.9887332,0.00016689398,0.00027677973,0.0058428342],"study_design_scores_gemma":[0.00003019584,0.0002829365,0.38720372,0.0000919449,0.00030769032,0.004162806,0.0003060703,0.0014865281,0.5864642,0.0006549806,0.018985864,0.000023042569],"about_ca_topic_score_codex":0.0009922292,"about_ca_topic_score_gemma":0.0016614341,"teacher_disagreement_score":0.0015636472,"about_ca_system_score_codex":0.0002221203,"about_ca_system_score_gemma":0.0001981279,"threshold_uncertainty_score":0.0052309036},"labels":[],"label_agreement":null},{"id":"W2332644168","doi":"10.1074/mcp.m115.052944","title":"Exosomes Secreted by Apoptosis-Resistant Acute Myeloid Leukemia (AML) Blasts Harbor Regulatory Network Proteins Potentially Involved in Antagonism of Apoptosis","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"","keywords":"Myeloid leukemia; Microvesicles; Apoptosis; Cancer research; Leukemia; Antagonism; Myeloid; Immunology; Biology; Cell biology; Medicine; microRNA; Gene; Genetics; Receptor","score_opus":0.004277520655691572,"score_gpt":0.1978369702026624,"score_spread":0.19355944954697082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2332644168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99858105,0.00038932552,0.0006605881,0.000017492735,0.000006110909,0.000008977341,0.0001410916,0.000013976809,0.0001814055],"genre_scores_gemma":[0.9973687,0.0003991388,0.00087690743,0.000018580371,0.000010545554,0.000017045333,0.00048280926,0.000005131631,0.00082111935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999118,0.000012546647,0.000011135066,0.000017225519,0.000029963523,0.000017387958],"domain_scores_gemma":[0.9999212,0.000018013716,0.000024129324,0.00000832977,0.000010800804,0.000017568878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000120386816,0.0001853123,0.00024150066,0.00022950298,0.0001335966,0.00024179029,0.00005354507,0.000139821,0.0011532195],"category_scores_gemma":[0.00018580044,0.0000821172,0.00015641219,0.00014723802,0.00010393425,0.00016067937,0.00027058285,0.00019666359,0.0002624164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018581645,0.00001515529,0.002169286,0.000021715598,0.0000075270805,0.00010523308,0.000022465068,0.00001996591,0.99564314,0.00003647146,0.000025453975,0.0017477812],"study_design_scores_gemma":[0.000045311288,0.0006415228,0.15476863,0.00001048722,0.00007075003,0.002304933,0.00013755531,0.0010380333,0.83688444,0.00021584773,0.0038742097,0.000008326502],"about_ca_topic_score_codex":0.00006835974,"about_ca_topic_score_gemma":0.00009838467,"teacher_disagreement_score":0.0011532195,"about_ca_system_score_codex":0.0001073162,"about_ca_system_score_gemma":0.00006656203,"threshold_uncertainty_score":0.0038579702},"labels":[],"label_agreement":null},{"id":"W2341204266","doi":"10.1074/mcp.o115.056515","title":"Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Seventh Framework Programme; European Research Council; Deutsche Forschungsgemeinschaft","keywords":"Proteolysis; Biology; Proteases; Cathepsin D; Cathepsin; Protease; Cathepsin L; Cathepsin B; Molecular biology; Computational biology; Biochemistry; Enzyme","score_opus":0.011083056558129356,"score_gpt":0.2272341908395967,"score_spread":0.21615113428146734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2341204266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4892622,0.045502786,0.44267207,0.0010714576,0.0009094652,0.0015194174,0.006304006,0.0011928626,0.0115657905],"genre_scores_gemma":[0.45450512,0.03644744,0.48492175,0.0010013923,0.00036140755,0.0014761974,0.010184812,0.00051529706,0.010586583],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952865,0.00012438039,0.00006239572,0.00012059926,0.00011887956,0.000045006323],"domain_scores_gemma":[0.9994985,0.00012090377,0.0001251523,0.00010457026,0.000107611195,0.000043325785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001281181,0.000926008,0.00034454445,0.0012013854,0.0006024006,0.000578937,0.00047873997,0.00069807237,0.0014897358],"category_scores_gemma":[0.0006490165,0.00029934282,0.00027461827,0.00067721517,0.0006591141,0.00065780815,0.0004990501,0.0008959771,0.0010389591],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005240978,0.000018451385,0.0004290671,0.00015693206,0.000010549499,0.00026049014,0.000030226707,0.00007797113,0.9945897,0.00025495363,0.00018179663,0.0039374875],"study_design_scores_gemma":[0.00001873517,0.0003889351,0.014824254,0.0001166569,0.000096226846,0.004182984,0.000118827804,0.0011920833,0.9534508,0.00062707585,0.024949327,0.00003392129],"about_ca_topic_score_codex":0.0004685176,"about_ca_topic_score_gemma":0.0015572469,"teacher_disagreement_score":0.0014897358,"about_ca_system_score_codex":0.00020300536,"about_ca_system_score_gemma":0.0005191586,"threshold_uncertainty_score":0.0067756176},"labels":[],"label_agreement":null},{"id":"W2342570428","doi":"10.1074/mcp.o115.055020","title":"Proteomics in India: A Report on a Brainstorming Meeting at Hyderabad, India","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada)","funders":"Tata Institute of Fundamental Research","keywords":"Proteomics; Attendance; Brainstorming; Identification (biology); Biotechnology; Data science; Psychology; Computer science; Political science; Biology; Ecology; Biochemistry; Artificial intelligence","score_opus":0.006778636074183794,"score_gpt":0.23361433015659822,"score_spread":0.2268356940824144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2342570428","genre_codex":"commentary","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.25776985,0.15488961,0.005411415,0.2874914,0.17099786,0.0021889384,0.0059619583,0.0015883854,0.11370063],"genre_scores_gemma":[0.39575756,0.10856326,0.007582549,0.07452362,0.061564647,0.0012775372,0.0061371573,0.0008243367,0.34376928],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99826163,0.00033924336,0.000095436444,0.0001770851,0.00063473725,0.0004918134],"domain_scores_gemma":[0.99655485,0.00037541921,0.000175585,0.00008730386,0.0009935024,0.0018133116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027793306,0.001717463,0.0005528295,0.0024121844,0.005847615,0.004690187,0.001618894,0.0026218938,0.007037683],"category_scores_gemma":[0.001817079,0.00054476055,0.001039923,0.002050728,0.0010233768,0.0017141203,0.003424323,0.0033348936,0.002938772],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006879182,0.00095297454,0.00995451,0.004152306,0.00015447894,0.010675787,0.03272688,0.0005481038,0.021876331,0.002853155,0.6929684,0.22244905],"study_design_scores_gemma":[0.000032692176,0.00037219017,0.048938226,0.0004267792,0.00008163359,0.0018422845,0.019996446,0.00015314284,0.0031610182,0.0003128076,0.92456686,0.000116029696],"about_ca_topic_score_codex":0.015971813,"about_ca_topic_score_gemma":0.019011227,"teacher_disagreement_score":0.015971813,"about_ca_system_score_codex":0.0036733572,"about_ca_system_score_gemma":0.00735269,"threshold_uncertainty_score":0.031757712},"labels":[],"label_agreement":null},{"id":"W2399912172","doi":"10.1074/mcp.m115.056887","title":"Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":217,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"","keywords":"Proteomics; Identification (biology); Chemistry; Computational biology; Proteome; Cell biology; Cell; Biochemistry; Biology; Gene","score_opus":0.008890333161255218,"score_gpt":0.22350019762358667,"score_spread":0.21460986446233143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2399912172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9414976,0.0030716264,0.050536394,0.00017584389,0.000050669703,0.00018328903,0.0027205641,0.0002294942,0.0015346309],"genre_scores_gemma":[0.89910287,0.0035320907,0.08956998,0.00023313831,0.00006208209,0.00019728726,0.005205928,0.0001514009,0.0019452464],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99985754,0.000012901995,0.0000145594895,0.00005227232,0.000045610865,0.000017087283],"domain_scores_gemma":[0.9999275,0.000020731495,0.000010406661,0.000009618063,0.00002066988,0.000011165377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025039652,0.00020144852,0.00031347832,0.00031034384,0.0001524562,0.00042283285,0.0002343031,0.0002537484,0.0004842491],"category_scores_gemma":[0.0003059991,0.000114797986,0.00022729396,0.00019940794,0.0001119658,0.00023917665,0.00023883939,0.00028320242,0.00037110673],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019369762,0.0000033969275,0.00034344452,0.00001854241,0.000004557941,0.000022153707,0.00001067691,0.000029417322,0.99820566,0.000018736542,0.000027490865,0.0012965236],"study_design_scores_gemma":[0.000018137956,0.00015485725,0.026811361,0.000014209002,0.00004689273,0.00089031796,0.000066634406,0.003825481,0.96353,0.00018947848,0.004437947,0.000014749726],"about_ca_topic_score_codex":0.00048788547,"about_ca_topic_score_gemma":0.00078574003,"teacher_disagreement_score":0.00048788547,"about_ca_system_score_codex":0.00012354716,"about_ca_system_score_gemma":0.00019762226,"threshold_uncertainty_score":0.0016199946},"labels":[],"label_agreement":null},{"id":"W2406027098","doi":"10.1074/mcp.m115.055640","title":"Stage-specific Proteomes from Onchocerca ochengi, Sister Species of the Human River Blindness Parasite, Uncover Adaptations to a Nodular Lifestyle","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Parasitic Diseases Research and Treatment","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Commission; College of Engineering, Michigan State University; Wellcome Trust; McGill University; Michigan State University","keywords":"Wolbachia; Biology; Onchocerca volvulus; Proteome; Onchocerciasis; Parasite hosting; Protein family; Nematode; Host (biology); Immunology; Genetics; Gene; Ecology","score_opus":0.02544817435026482,"score_gpt":0.27919021460948795,"score_spread":0.25374204025922314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2406027098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961482,0.0011781657,0.00047087562,0.000057102097,0.00001069579,0.0000125811885,0.0015511941,0.000018832015,0.0005523191],"genre_scores_gemma":[0.99013066,0.0011862245,0.0017918015,0.00007636964,0.000013601764,0.00001630589,0.0053328075,0.000012738485,0.0014394716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99996436,0.0000020697894,0.0000028140034,0.000011533376,0.000009257416,0.000009861887],"domain_scores_gemma":[0.9999453,0.000008072999,0.00001776144,0.000003518813,0.00000966501,0.000015675654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000049602822,0.0002649879,0.0001281638,0.00042313346,0.00022731001,0.0002207288,0.00007575161,0.00019096587,0.0004339315],"category_scores_gemma":[0.00010766172,0.00008476334,0.0001941665,0.00031532595,0.00010743989,0.00025986266,0.00020003312,0.00021286115,0.00015288025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008081069,0.000010509695,0.004891801,0.000064837484,0.0000068759214,0.00010301206,0.00006833792,0.000017668504,0.99285465,0.000020991654,0.00006521353,0.0018152616],"study_design_scores_gemma":[0.000007029649,0.00024722604,0.8337037,0.000022358294,0.000066003224,0.0018133395,0.0005661468,0.00091256516,0.15766099,0.00011969662,0.00486652,0.000014521747],"about_ca_topic_score_codex":0.00089671207,"about_ca_topic_score_gemma":0.0016965606,"teacher_disagreement_score":0.00089671207,"about_ca_system_score_codex":0.00009685497,"about_ca_system_score_gemma":0.0001144801,"threshold_uncertainty_score":0.0017829537},"labels":[],"label_agreement":null},{"id":"W2407643791","doi":"10.1074/mcp.m115.055376","title":"Uncovering a Dual Regulatory Role for Caspases During Endoplasmic Reticulum Stress-induced Cell Death","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Unfolded protein response; Endoplasmic reticulum; Cell biology; Caspase; Programmed cell death; Biology; Proteome; Transcriptome; Caspase 12; Downregulation and upregulation; Apoptosis; Gene expression; Gene; Bioinformatics; Genetics","score_opus":0.0057717072130392495,"score_gpt":0.20553968130138925,"score_spread":0.19976797408835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2407643791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9634787,0.014521451,0.018944364,0.00047857282,0.000058970105,0.000053533677,0.00089585927,0.00014883134,0.0014196936],"genre_scores_gemma":[0.9797233,0.0057252487,0.0118772825,0.00020919382,0.000037141046,0.000028288445,0.0010763473,0.000018297622,0.0013049389],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998153,0.000030122732,0.000013118635,0.00006665961,0.00004630981,0.000028428389],"domain_scores_gemma":[0.9998654,0.000017833901,0.000046407764,0.000011514015,0.00003400842,0.000024917825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026544533,0.00036637278,0.0003089616,0.0004997544,0.00017314135,0.0005041643,0.00019881656,0.00038223996,0.0005306757],"category_scores_gemma":[0.00018176422,0.000121995545,0.00026699033,0.00036186608,0.0004039451,0.0007547605,0.00026260735,0.0006030055,0.00036611356],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016837442,0.000017985081,0.00074766483,0.000073689334,0.0000073975525,0.00009029149,0.000022961582,0.000059121332,0.9956819,0.0002407277,0.00005198412,0.0028379513],"study_design_scores_gemma":[0.00004349589,0.0003338935,0.04562766,0.00003092774,0.000050726157,0.0014179677,0.00014808933,0.0026835327,0.9419508,0.0014304123,0.0062591988,0.000023294264],"about_ca_topic_score_codex":0.00011437143,"about_ca_topic_score_gemma":0.00016044741,"teacher_disagreement_score":0.0005306757,"about_ca_system_score_codex":0.00033165436,"about_ca_system_score_gemma":0.00023426935,"threshold_uncertainty_score":0.0024063587},"labels":[],"label_agreement":null},{"id":"W2409067338","doi":"10.1074/mcp.e116.061689","title":"On Strengthening the MCP Editorial Leadership","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chemistry","score_opus":0.0178525962544216,"score_gpt":0.23740180277348785,"score_spread":0.21954920651906626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409067338","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":"evaluation","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":"evaluation","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022764198,0.003443867,0.0011026498,0.16961464,0.819867,0.00007127557,0.00007199686,0.00042466467,0.0051761568],"genre_scores_gemma":[0.0031040648,0.0041117,0.0019416518,0.09795618,0.861771,0.00015554969,0.00011346014,0.00070368324,0.030142706],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9336622,0.012113422,0.0054133027,0.0072840718,0.036681324,0.004845683],"domain_scores_gemma":[0.6060243,0.043609224,0.022822397,0.011100293,0.22713603,0.08930774],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.05666922,0.0033360713,0.002809545,0.0070319534,0.009582081,0.043129295,0.004932054,0.01340219,0.041822206],"category_scores_gemma":[0.22548746,0.0014492976,0.0025916793,0.0037002235,0.008204279,0.018597152,0.009076052,0.02761884,0.04128263],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024568593,0.000012642463,0.00009618288,0.00010904572,0.0000079858455,0.00011898449,0.00012672164,0.00003296441,0.00009132276,0.0013073244,0.9881092,0.00996293],"study_design_scores_gemma":[0.000014545662,0.000022862883,0.00015772667,0.0002210479,0.000009618902,0.00017001347,0.00023984913,0.00007759148,0.000085103384,0.0015432227,0.9974354,0.000023040177],"about_ca_topic_score_codex":0.0011286234,"about_ca_topic_score_gemma":0.0020149164,"teacher_disagreement_score":0.94333076,"about_ca_system_score_codex":0.008038269,"about_ca_system_score_gemma":0.024606409,"threshold_uncertainty_score":0.29969907},"labels":[],"label_agreement":null},{"id":"W2462419944","doi":"10.1074/mcp.o116.058685","title":"High Sensitivity Crosslink Detection Coupled With Integrative Structure Modeling in the Mass Spec Studio","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Spec#; Sensitivity (control systems); Studio; Chemistry; Computer science; Engineering; Programming language","score_opus":0.0074421162923076125,"score_gpt":0.21963157879356976,"score_spread":0.21218946250126214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2462419944","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.041967206,0.00024858178,0.8056506,0.00018156496,0.00008594674,0.00020690728,0.0043451944,0.14335005,0.003963919],"genre_scores_gemma":[0.11866701,0.00040179482,0.8401118,0.00020884938,0.000037604594,0.0011033269,0.009529313,0.026012562,0.0039278385],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926966,0.000115922594,0.00005608356,0.00020051435,0.00027702612,0.00008066911],"domain_scores_gemma":[0.9993554,0.0002877395,0.00007425189,0.00013330461,0.0000985192,0.00005078279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024889128,0.0019994806,0.0014064809,0.00077665265,0.0005987775,0.0019202982,0.0028453777,0.0008187855,0.012492146],"category_scores_gemma":[0.0024382412,0.0012159206,0.0014078525,0.0006527745,0.00047090117,0.0016173549,0.0016722224,0.0027458118,0.0045621577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037202071,0.00089391,0.011853575,0.002756754,0.0018302534,0.0017089158,0.0016392353,0.11432922,0.4236509,0.048866797,0.12195293,0.2667974],"study_design_scores_gemma":[0.00025017303,0.00022307686,0.0016298984,0.000055097677,0.000099670666,0.00052240177,0.000075541204,0.7683671,0.17050178,0.0078062858,0.05033212,0.00013693128],"about_ca_topic_score_codex":0.0015339939,"about_ca_topic_score_gemma":0.001991011,"teacher_disagreement_score":0.012492146,"about_ca_system_score_codex":0.00075608684,"about_ca_system_score_gemma":0.0017021585,"threshold_uncertainty_score":0.041790426},"labels":[],"label_agreement":null},{"id":"W2472989101","doi":"10.1074/mcp.m115.057695","title":"Quantification of Human Kallikrein-Related Peptidases in Biological Fluids by Multiplatform Targeted Mass Spectrometry Assays","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Coagulation, Bradykinin, Polyphosphates, and Angioedema","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research; Prostate Cancer Canada","keywords":"Kallikrein; Multiplex; Proteases; Chemistry; Mass spectrometry; Computational biology; Molecular biology; Biology; Chromatography; Biochemistry; Bioinformatics; Enzyme","score_opus":0.01765791127110583,"score_gpt":0.25076376692475594,"score_spread":0.2331058556536501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2472989101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.63409597,0.008006047,0.34736982,0.00040778768,0.0002927753,0.000854791,0.0023114104,0.0026172586,0.004044237],"genre_scores_gemma":[0.56380105,0.0073707523,0.41671208,0.0006764937,0.00015910724,0.0018596847,0.002992386,0.00017065775,0.0062579145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99801034,0.0003028819,0.00015277106,0.0005723757,0.00080765504,0.00015399305],"domain_scores_gemma":[0.99934405,0.0001754184,0.00017676069,0.00006599291,0.00017399703,0.000063641004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013579755,0.001884641,0.0007510887,0.0019359142,0.0005467442,0.0007375688,0.00084344804,0.0012765389,0.00075037475],"category_scores_gemma":[0.0016122076,0.00049960293,0.0006325994,0.0009999445,0.0006221433,0.0008125408,0.00088547287,0.0011134048,0.00075260154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010183196,0.00008868661,0.00078200345,0.000117998,0.00004839018,0.00006387771,0.000055252673,0.0003884176,0.99105936,0.0001935849,0.00014624084,0.006954202],"study_design_scores_gemma":[0.000015910955,0.00025972683,0.0029907608,0.000014820758,0.000052603213,0.00027683924,0.000035139645,0.00809504,0.9861816,0.00021390684,0.0018313888,0.000032333683],"about_ca_topic_score_codex":0.0005144746,"about_ca_topic_score_gemma":0.0010422862,"teacher_disagreement_score":0.0019359142,"about_ca_system_score_codex":0.00052321336,"about_ca_system_score_gemma":0.00055541587,"threshold_uncertainty_score":0.007181704},"labels":[],"label_agreement":null},{"id":"W2486797327","doi":"10.1074/mcp.o116.058438","title":"Proteoform-Specific Insights into Cellular Proteome Regulation","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"","keywords":"Computational biology; Proteome; Human proteome project; Proteomics; Biology; Bioinformatics; Gene; Genetics","score_opus":0.007658394315130301,"score_gpt":0.21738649746514133,"score_spread":0.20972810315001103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2486797327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9515185,0.0028571463,0.042298052,0.00014024452,0.000022242724,0.00005402635,0.001159714,0.0002005581,0.0017495276],"genre_scores_gemma":[0.97328293,0.0022468618,0.021972315,0.00009890491,0.000022395772,0.000034075205,0.001384384,0.000032832464,0.0009251897],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985623,0.00002071561,0.0000115296,0.000035513465,0.0000531551,0.000022746484],"domain_scores_gemma":[0.999863,0.000028002654,0.000044342458,0.000019616758,0.000028676835,0.000016307546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031662732,0.00037795573,0.00022098023,0.000855308,0.00016885501,0.0004107152,0.00012787509,0.00019295063,0.00041296243],"category_scores_gemma":[0.00029178566,0.00014735994,0.0002829908,0.0004572087,0.00022404052,0.00036090764,0.00040361637,0.00041057856,0.00017481916],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047002086,0.0000076079,0.0014736434,0.000046243913,0.000008825225,0.00005314704,0.000029191497,0.00017033852,0.99467766,0.00021296072,0.000025793119,0.0032476396],"study_design_scores_gemma":[0.000007014105,0.00021544893,0.172164,0.0000318091,0.000072124116,0.0017346704,0.0002065081,0.013804758,0.8042614,0.002372796,0.0050958283,0.00003360355],"about_ca_topic_score_codex":0.00033647098,"about_ca_topic_score_gemma":0.00043144025,"teacher_disagreement_score":0.000855308,"about_ca_system_score_codex":0.0002064892,"about_ca_system_score_gemma":0.00015073777,"threshold_uncertainty_score":0.0016745329},"labels":[],"label_agreement":null},{"id":"W2526013154","doi":"10.1074/mcp.m116.060483","title":"Large-Scale Screening of Preferred Interactions of Human Src Homology-3 (SH3) Domains Using Native Target Proteins as Affinity Ligands","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Sigrid Juséliuksen Säätiö; Academy of Finland; Helsingin ja Uudenmaan Sairaanhoitopiiri; Helsingin Yliopisto","keywords":"SH3 domain; Computational biology; Proto-oncogene tyrosine-protein kinase Src; Homology (biology); Chemistry; Biochemistry; Biology; Amino acid; Signal transduction","score_opus":0.03150740629221532,"score_gpt":0.32463373137800694,"score_spread":0.2931263250857916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2526013154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927706,0.0003397291,0.0061723934,0.000026242404,0.0000024058506,0.000041672836,0.00021782634,0.000045525263,0.00038364518],"genre_scores_gemma":[0.98385954,0.00054137583,0.013532855,0.000051367075,0.0000043366704,0.00006115345,0.0009961919,0.000016455306,0.0009366651],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99973387,0.00006680093,0.000016928849,0.00004673991,0.00009429312,0.000041424435],"domain_scores_gemma":[0.9998841,0.000055915898,0.000013028867,0.0000113044225,0.000014070083,0.000021522208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038474388,0.00032335322,0.00032466915,0.00022564492,0.00020197262,0.00025343194,0.00022487024,0.00021623768,0.00054184196],"category_scores_gemma":[0.00033121073,0.00014605268,0.00016879465,0.00029913912,0.00011306347,0.000120193086,0.00029230298,0.00027296616,0.00023790097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007796311,0.000043480824,0.0006941494,0.000018297043,0.000007852457,0.000032122633,0.000013789143,0.00029914858,0.9975478,0.00003547218,0.000029602861,0.0012002797],"study_design_scores_gemma":[0.000015786041,0.0004351948,0.0070869317,0.0000028317556,0.000023937815,0.00025767082,0.000037460206,0.004394071,0.9867907,0.000060796952,0.0008868343,0.000007883704],"about_ca_topic_score_codex":0.0006133661,"about_ca_topic_score_gemma":0.0012428819,"teacher_disagreement_score":0.0006133661,"about_ca_system_score_codex":0.00025506917,"about_ca_system_score_gemma":0.0001762818,"threshold_uncertainty_score":0.0020347834},"labels":[],"label_agreement":null},{"id":"W2527780086","doi":"10.1074/mcp.m116.058081","title":"The Salivary Protein Repertoire of the Polyphagous Spider Mite Tetranychus urticae: A Quest for Effectors","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute of General Medical Sciences; Comisión Nacional de Investigación Científica y Tecnológica; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Vlaams Supercomputer Centrum; Ontario Genomics Institute; Fonds Wetenschappelijk Onderzoek; Vlaamse regering; Universiteit Gent; European Commission; National Science Foundation; Government of Canada; Genome Canada; Bijzonder Onderzoeksfonds UGent; National Institutes of Health; Ontario Genomics","keywords":"Tetranychus urticae; Spider mite; Acari; Repertoire; Effector; Biology; Spider; Botany; Salivary Proteins; Mite; Zoology; Cell biology; Saliva; Biochemistry; Art","score_opus":0.0031174685003108804,"score_gpt":0.19961770003130183,"score_spread":0.19650023153099094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2527780086","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99760723,0.00095808186,0.00079820014,0.000051191782,0.0000035675494,0.0000056796384,0.0002907448,0.000015940004,0.0002693033],"genre_scores_gemma":[0.99597377,0.0008872902,0.0014346362,0.00006846512,0.000007077839,0.000009794394,0.0009787182,0.000010348888,0.0006297803],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999572,0.000004921355,0.000003706857,0.000015016881,0.000011455486,0.000007704188],"domain_scores_gemma":[0.9999491,0.000007696546,0.000014848123,0.0000060581606,0.0000102331405,0.00001201398],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000074300864,0.00020597756,0.0001837038,0.00024355472,0.00010730403,0.00024621782,0.000086474414,0.00018820397,0.00032420643],"category_scores_gemma":[0.00009581116,0.00007627343,0.00018053493,0.00011988586,0.000109186396,0.00019691541,0.00018317069,0.0001798043,0.00014429893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022889035,0.000003280969,0.0015245102,0.000020744987,0.00000354082,0.000021885784,0.00001923781,0.0000121006515,0.99756455,0.00000962335,0.000008804545,0.00078882946],"study_design_scores_gemma":[0.000009406371,0.00036206658,0.6019066,0.000023525969,0.00008085105,0.0018202075,0.0003768016,0.0018371245,0.38971373,0.00021790141,0.0036362149,0.000015570506],"about_ca_topic_score_codex":0.00021900352,"about_ca_topic_score_gemma":0.00040431976,"teacher_disagreement_score":0.00032420643,"about_ca_system_score_codex":0.00007621527,"about_ca_system_score_gemma":0.00005782454,"threshold_uncertainty_score":0.0010846257},"labels":[],"label_agreement":null},{"id":"W2529979227","doi":"10.1074/mcp.m116.060244","title":"Immunoseroproteomic Profiling in African American Men with Prostate Cancer: Evidence for an Autoantibody Response to Glycolysis and Plasminogen-Associated Proteins","year":2016,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"National Institute on Minority Health and Health Disparities; National Center on Minority Health and Health Disparities","keywords":"Autoantibody; Prostate cancer; Glycolysis; Medicine; Cancer; Internal medicine; Immunology; Antibody; Metabolism","score_opus":0.024144816672178937,"score_gpt":0.3194609226134236,"score_spread":0.2953161059412447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2529979227","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988656,0.0004669384,0.00018605747,0.00003812774,0.000005192912,0.0000058300843,0.000112522124,0.0000052633363,0.00031434398],"genre_scores_gemma":[0.9992478,0.00019822158,0.00024873583,0.00005363778,0.000007674861,0.0000040214527,0.00008898814,0.0000019227248,0.00014908111],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998945,0.00002340216,0.000006764761,0.000026868835,0.000023081588,0.000025301064],"domain_scores_gemma":[0.99989414,0.00002057958,0.000038839615,0.0000052738037,0.000016874852,0.000024238681],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001675348,0.0001994123,0.00014967746,0.0007599519,0.0003545119,0.00022767417,0.000082948136,0.0001843049,0.0009990071],"category_scores_gemma":[0.0003391939,0.00009388439,0.00013205281,0.0005205093,0.00016041576,0.00010865358,0.00021141476,0.00016312215,0.00012822736],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014816879,0.00021920336,0.65197575,0.0001347551,0.00019404125,0.0016824482,0.000946996,0.00017930314,0.32190457,0.00020586143,0.00056601834,0.020509392],"study_design_scores_gemma":[0.000010712316,0.00029958104,0.98522085,0.000012093511,0.00007228528,0.002434505,0.0003969037,0.00041622945,0.009914009,0.00007032505,0.0011460822,0.0000064298447],"about_ca_topic_score_codex":0.0012792941,"about_ca_topic_score_gemma":0.0012198229,"teacher_disagreement_score":0.0012792941,"about_ca_system_score_codex":0.000075317555,"about_ca_system_score_gemma":0.00008963274,"threshold_uncertainty_score":0.0033419728},"labels":[],"label_agreement":null},{"id":"W2568044202","doi":"10.1074/mcp.m116.061903","title":"Stable Isotope Labeling with Amino Acids (SILAC)-Based Proteomics of Primary Human Kidney Cells Reveals a Novel Link between Male Sex Hormones and Impaired Energy Metabolism in Diabetic Kidney Disease","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Hormonal and reproductive studies","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto; University Health Network","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research","keywords":"Stable isotope labeling by amino acids in cell culture; Endocrinology; Biology; Kidney; Internal medicine; Proteomics; Oxidative stress; Dihydrotestosterone; Renal cortex; Hormone; Biochemistry; Androgen; Medicine","score_opus":0.014675430453208687,"score_gpt":0.228622420519029,"score_spread":0.21394699006582032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2568044202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9112499,0.009913451,0.05901457,0.00066330936,0.00028203783,0.00009213883,0.010504346,0.0006178173,0.0076624644],"genre_scores_gemma":[0.91028,0.0097454935,0.05850712,0.00056494103,0.00010272501,0.000111950096,0.011823616,0.0002578372,0.0086062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983287,0.000020687567,0.000014652903,0.00005306396,0.00004793719,0.000030746374],"domain_scores_gemma":[0.9998847,0.000025249381,0.000020577465,0.000021704596,0.000024896524,0.000022765666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031024174,0.00032857584,0.0003048899,0.000522243,0.00040875224,0.00054013875,0.00024576727,0.0002788914,0.002182866],"category_scores_gemma":[0.000220789,0.00015982459,0.00029685462,0.0007130743,0.00025345173,0.00026959993,0.00025070636,0.00046233926,0.00095058366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010619302,0.000009262271,0.00071959436,0.00006369664,0.000011971806,0.000083905106,0.000036765217,0.000015849058,0.9967573,0.000088532084,0.00012214131,0.0019847124],"study_design_scores_gemma":[0.000014322941,0.00013016765,0.050082386,0.000016754591,0.000059553673,0.0009677793,0.00010243132,0.00073205936,0.9381413,0.00027871295,0.009461124,0.0000134210695],"about_ca_topic_score_codex":0.0012994504,"about_ca_topic_score_gemma":0.0023490218,"teacher_disagreement_score":0.002182866,"about_ca_system_score_codex":0.00019754276,"about_ca_system_score_gemma":0.0003977445,"threshold_uncertainty_score":0.0073024035},"labels":[],"label_agreement":null},{"id":"W2569304228","doi":"10.1074/mcp.m116.064246","title":"Novel Allosteric Pathway of Eg5 Regulation Identified through Multivariate Statistical Analysis of Hydrogen-Exchange Mass Spectrometry (HX-MS) Ligand Screening Data","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; University of Alberta; University of Calgary","funders":"","keywords":"Allosteric regulation; Chemistry; Mass spectrometry; Ligand (biochemistry); Multivariate analysis; Computational biology; Biochemistry; Chromatography; Enzyme; Biology; Receptor; Medicine; Internal medicine","score_opus":0.029563845590146506,"score_gpt":0.2779870032603898,"score_spread":0.24842315767024326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2569304228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97519946,0.00016220145,0.022025403,0.000057888177,0.0000035341698,0.000036432266,0.0010996027,0.0004857607,0.00092983193],"genre_scores_gemma":[0.98437405,0.00016723122,0.013940955,0.000027992995,0.0000025340514,0.000037628335,0.0010765187,0.000026011967,0.00034707304],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990654,0.000017384304,0.000005790732,0.000027856124,0.000028375238,0.000013958306],"domain_scores_gemma":[0.9999039,0.0000348494,0.000022985505,0.000010876902,0.0000185803,0.000008758886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031497292,0.00033517563,0.00023438912,0.00037992618,0.00015288491,0.0002791614,0.00019155875,0.00013604671,0.001029418],"category_scores_gemma":[0.00031658023,0.00007216998,0.0003202656,0.00033331627,0.00016450264,0.00020340369,0.00018408432,0.00022308345,0.00012944221],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009823636,0.00024828062,0.024929883,0.00028286583,0.00014870144,0.0003613781,0.00019460058,0.0435949,0.8814767,0.0022155351,0.0009921644,0.044572633],"study_design_scores_gemma":[0.00003875059,0.00047198567,0.06923943,0.0000105524505,0.00009921646,0.0002423661,0.0001427739,0.47494575,0.45121726,0.0011804848,0.0023464656,0.000064990156],"about_ca_topic_score_codex":0.0020589768,"about_ca_topic_score_gemma":0.001631155,"teacher_disagreement_score":0.0020589768,"about_ca_system_score_codex":0.00029142172,"about_ca_system_score_gemma":0.00024607443,"threshold_uncertainty_score":0.0040940046},"labels":[],"label_agreement":null},{"id":"W2571074332","doi":"10.1074/mcp.m116.062273","title":"Targeted Proteomics for Multiplexed Verification of Markers of Colorectal Tumorigenesis","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Cancer Research","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Downregulation and upregulation; Biomarker; Proteomics; Cancer research; Adenoma; Carcinogenesis; Colorectal cancer; Shotgun; Pathology; Biology; Medicine; Internal medicine; Cancer; Gene; Biochemistry","score_opus":0.013933854444098394,"score_gpt":0.26623080832391866,"score_spread":0.25229695387982026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2571074332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.801142,0.0046608555,0.17950472,0.00038361532,0.00043294078,0.00064030493,0.0033274658,0.0015933345,0.008314767],"genre_scores_gemma":[0.85300475,0.001038987,0.1366308,0.00025225457,0.00009769911,0.00092638214,0.0016013769,0.00008391075,0.006363772],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99831164,0.00043189494,0.00012350398,0.00048449618,0.00046363872,0.00018477414],"domain_scores_gemma":[0.999418,0.00017365017,0.00011167284,0.000096290874,0.00013531731,0.00006507219],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017803573,0.00075554237,0.00048707717,0.0013026417,0.0004015568,0.0008968988,0.0003387105,0.0005664838,0.0042916993],"category_scores_gemma":[0.0016013522,0.00042050268,0.00024012971,0.0008730373,0.0003383652,0.0004098612,0.0005970977,0.00082017743,0.0012097319],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041123971,0.00017501396,0.0033755247,0.00010407029,0.00008133536,0.00007577451,0.000059561407,0.00017203414,0.98180515,0.00028858284,0.00041276935,0.013038938],"study_design_scores_gemma":[0.000088696914,0.0013837301,0.08179963,0.00005250665,0.00015750562,0.0015367854,0.000098560355,0.01707052,0.888234,0.000684089,0.008859467,0.000034449975],"about_ca_topic_score_codex":0.00027267225,"about_ca_topic_score_gemma":0.00077513204,"teacher_disagreement_score":0.0042916993,"about_ca_system_score_codex":0.00035234808,"about_ca_system_score_gemma":0.00031489154,"threshold_uncertainty_score":0.014357209},"labels":[],"label_agreement":null},{"id":"W2581479995","doi":"10.1074/mcp.m116.063818","title":"Comparative Analysis of Mitochondrial N-Termini from Mouse, Human, and Yeast","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Cancer Institute; Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Mitochondrion; Biology; Cleavage (geology); Amino acid; Yeast; Biochemistry; Proteome; Saccharomyces cerevisiae; Peptide sequence; Conserved sequence; Cell biology; Gene","score_opus":0.019380637050867185,"score_gpt":0.2756735607906912,"score_spread":0.25629292373982404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2581479995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9767072,0.0058856118,0.0071471557,0.00006555324,0.00004319454,0.00003977697,0.007536381,0.00008407689,0.0024910804],"genre_scores_gemma":[0.9009057,0.0064359833,0.02616666,0.00029345477,0.000036653153,0.00012005516,0.061746415,0.00019663066,0.004098426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998621,0.0000109524835,0.00001798836,0.000044650238,0.000043307584,0.000021077105],"domain_scores_gemma":[0.9996866,0.000055124696,0.000093443625,0.000035063556,0.00007270952,0.000057135814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023866502,0.0003733508,0.00026518226,0.00080618815,0.00024108036,0.00042339833,0.00019368889,0.00021742271,0.0009103457],"category_scores_gemma":[0.0003822553,0.000101915546,0.00033979336,0.00059941696,0.00010736513,0.00017162456,0.00022536563,0.00030224782,0.00066584983],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004680941,0.000012581621,0.0026643707,0.00013348406,0.00003256672,0.00021117578,0.000079784775,0.000085826745,0.9917813,0.00013062466,0.000106599815,0.0042937407],"study_design_scores_gemma":[0.000045401186,0.00031609033,0.20301051,0.00011586259,0.00025935896,0.003864393,0.0002904652,0.0017811658,0.75166094,0.0003714908,0.03824871,0.000035688037],"about_ca_topic_score_codex":0.001084024,"about_ca_topic_score_gemma":0.0014873906,"teacher_disagreement_score":0.001084024,"about_ca_system_score_codex":0.0002209478,"about_ca_system_score_gemma":0.00023319788,"threshold_uncertainty_score":0.00304538},"labels":[],"label_agreement":null},{"id":"W2584859013","doi":"10.1074/mcp.m116.061440","title":"An Anatomically Resolved Mouse Brain Proteome Reveals Parkinson Disease-relevant Pathways","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Parkinson's Disease Mechanisms and Treatments","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; Canadian Institutes of Health Research; National Cancer Institute; National Institutes of Health; Cancer Prevention and Research Institute of Texas; Michael J. Fox Foundation for Parkinson's Research; National Research Foundation of Korea; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Howard Hughes Medical Institute","keywords":"Proteome; Parkinson's disease; Disease; Computational biology; Neuroscience; Biology; Proteomics; Cell biology; Bioinformatics; Medicine; Pathology; Genetics; Gene","score_opus":0.017459111855265635,"score_gpt":0.2618167249593475,"score_spread":0.24435761310408186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2584859013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8987215,0.006097813,0.073745035,0.00037503298,0.00012605367,0.00010598982,0.014934366,0.0012157026,0.004678437],"genre_scores_gemma":[0.8129903,0.010274498,0.1388106,0.000512068,0.000058508806,0.0005442219,0.02379428,0.00078599714,0.012229408],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980754,0.000017377277,0.000021765953,0.00006999143,0.000054950215,0.00002834441],"domain_scores_gemma":[0.99985075,0.000013798377,0.00006139035,0.000019126754,0.00002324548,0.000031710264],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017319567,0.0005619909,0.0002972477,0.0017393817,0.0003783345,0.0004998106,0.00026755116,0.00034578238,0.0013773134],"category_scores_gemma":[0.00010220702,0.0003187283,0.0003988538,0.0007741728,0.00023941028,0.0004129046,0.00046702434,0.00066038454,0.00064312667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006321799,0.000007059215,0.0006502981,0.000053830303,0.000015775495,0.00007006508,0.000028114493,0.00006731786,0.9965649,0.00016007556,0.0001687465,0.0021505998],"study_design_scores_gemma":[0.000035724705,0.00022415802,0.06787243,0.000055910637,0.00019267705,0.0023779634,0.00013973708,0.0023020995,0.8996056,0.000834579,0.026324118,0.000034997825],"about_ca_topic_score_codex":0.0006428289,"about_ca_topic_score_gemma":0.0017424453,"teacher_disagreement_score":0.0017393817,"about_ca_system_score_codex":0.00028943972,"about_ca_system_score_gemma":0.00024404915,"threshold_uncertainty_score":0.0046075583},"labels":[],"label_agreement":null},{"id":"W2586660180","doi":"10.1074/mcp.o116.066456","title":"Sharpening Host Defenses during Infection: Proteases Cut to the Chase","year":2017,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Canadian Institute for Advanced Research","keywords":"Proteases; Proteome; Biology; Virulence; Proteomics; Computational biology; Metagenomics; Protease; Human pathogen; Pathogen; Microbiology; Bioinformatics; Genetics; Bacteria; Enzyme; Gene; Biochemistry","score_opus":0.03764566248860232,"score_gpt":0.30532527082655947,"score_spread":0.2676796083379571,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586660180","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008292435,0.9602759,0.00822344,0.011613227,0.004256612,0.000037216694,0.00007632598,0.00013133827,0.0070935288],"genre_scores_gemma":[0.065610304,0.89659935,0.0095908465,0.009684916,0.0033135328,0.000057548397,0.00017482585,0.000082639635,0.014885951],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994655,0.00013184767,0.000043438213,0.00007962416,0.00018534176,0.000094129384],"domain_scores_gemma":[0.99963033,0.0001046482,0.000081522645,0.000016140444,0.000103050246,0.00006431093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009244133,0.00085765385,0.0008979265,0.00066489645,0.0005628639,0.002452349,0.00045359303,0.0018474666,0.0019968266],"category_scores_gemma":[0.0009002176,0.00027527465,0.00067743147,0.00041944213,0.0013095782,0.00353986,0.0010933736,0.0034175618,0.001624639],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087844656,0.0002040776,0.002475852,0.009899559,0.00022757318,0.0030740579,0.0013788184,0.0007745402,0.2885856,0.064282745,0.0687617,0.559457],"study_design_scores_gemma":[0.00003648048,0.0005219275,0.003248383,0.0016814566,0.00009288569,0.005755843,0.000915916,0.0004346721,0.059798624,0.01927738,0.90817034,0.00006612392],"about_ca_topic_score_codex":0.0004541083,"about_ca_topic_score_gemma":0.0006630127,"teacher_disagreement_score":0.002452349,"about_ca_system_score_codex":0.0011548871,"about_ca_system_score_gemma":0.00080818444,"threshold_uncertainty_score":0.00837934},"labels":[],"label_agreement":null},{"id":"W2586724626","doi":"10.1074/mcp.m116.065128","title":"Time-resolved Phosphoproteome Analysis of Paradoxical RAF Activation Reveals Novel Targets of ERK","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Melanoma and MAPK Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec à Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Genome Canada","keywords":"Vemurafenib; Phosphoproteomics; MAPK/ERK pathway; Phosphorylation; Kinase; Actin cytoskeleton; Cell biology; Cancer research; V600E; Chemistry; Signal transduction; GTPase; Biology; Melanoma; Protein kinase A; Cell; Protein phosphorylation; Mutant; Cytoskeleton; Biochemistry","score_opus":0.011099547197506577,"score_gpt":0.23583559430668702,"score_spread":0.22473604710918044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586724626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934841,0.00043126545,0.0032633322,0.000039192917,0.000007033762,0.000012292241,0.0023204987,0.00007917934,0.00036317142],"genre_scores_gemma":[0.98771966,0.00047165295,0.005717218,0.000030437786,0.000008200856,0.000034843586,0.005440258,0.00002691723,0.00055084366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990666,0.000005961414,0.000007439931,0.00003283265,0.00002446262,0.000022743185],"domain_scores_gemma":[0.99989676,0.000025243713,0.000028584258,0.000010792808,0.000020469903,0.00001810386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017554995,0.000301689,0.00039629475,0.0011348553,0.00015608309,0.00037416944,0.00016437264,0.00021305488,0.0009135494],"category_scores_gemma":[0.00024230538,0.000113300695,0.00041475223,0.00093656295,0.00013454017,0.00027047325,0.00024030628,0.00030509752,0.0002477617],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010077653,0.00011507539,0.025862042,0.00027848792,0.00014954225,0.00042933103,0.0001218881,0.0021655785,0.9514065,0.00022156053,0.0005706805,0.017671462],"study_design_scores_gemma":[0.000038199163,0.00038312006,0.6520854,0.000022290982,0.00022708619,0.0018285821,0.0003055465,0.05182911,0.28855103,0.00095785176,0.003706368,0.00006540185],"about_ca_topic_score_codex":0.0007273621,"about_ca_topic_score_gemma":0.0009875308,"teacher_disagreement_score":0.0011348553,"about_ca_system_score_codex":0.00013710627,"about_ca_system_score_gemma":0.00011698235,"threshold_uncertainty_score":0.0030561686},"labels":[],"label_agreement":null},{"id":"W2586974551","doi":"10.1074/mcp.m116.061267","title":"Effects of ErbB2 Overexpression on the Proteome and ErbB Ligand-specific Phosphosignaling in Mammary Luminal Epithelial Cells","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"HER2/EGFR in Cancer Research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; Association for International Cancer Research; Cancer Research UK; National Institute for Health and Care Research; National Institute for Social Care and Health Research","keywords":"Stable isotope labeling by amino acids in cell culture; ErbB; Biology; Cancer research; Signal transduction; Epidermal growth factor receptor; Cell biology; Epidermal growth factor; Phosphorylation; Receptor; Proteomics; Genetics","score_opus":0.015341490539569777,"score_gpt":0.2663836283510436,"score_spread":0.25104213781147383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586974551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99749583,0.0007593183,0.0004819962,0.00004352237,0.000017989927,0.0000114538225,0.00033255943,0.000024423081,0.00083291595],"genre_scores_gemma":[0.99614775,0.00065804203,0.0009767633,0.000043103395,0.0000071352233,0.000024492563,0.00042537614,0.000011723385,0.0017057197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999,0.000019186233,0.000008598742,0.000019262263,0.000024061988,0.000028872128],"domain_scores_gemma":[0.9999578,0.00000792998,0.000009204827,0.0000066616585,0.0000051691004,0.000013294588],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012007406,0.00020069088,0.0001884268,0.00011974852,0.0001199045,0.00022645078,0.00009158224,0.00014935099,0.0008196938],"category_scores_gemma":[0.00006333952,0.000095524614,0.00015865195,0.00019310873,0.00012888847,0.00014164684,0.00014966849,0.00024640898,0.00016639999],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013593554,0.000019092306,0.00011316343,0.0000140650345,0.000002687817,0.000024920255,0.000009182253,0.000026601501,0.9992842,0.000023864766,0.000012552053,0.0003337344],"study_design_scores_gemma":[0.000010269522,0.00027808017,0.009542812,0.000002344624,0.000012381597,0.00012372845,0.000041548556,0.0006844974,0.9881556,0.000027260943,0.0011180205,0.0000035009302],"about_ca_topic_score_codex":0.00068229967,"about_ca_topic_score_gemma":0.0009093241,"teacher_disagreement_score":0.0008196938,"about_ca_system_score_codex":0.00018413749,"about_ca_system_score_gemma":0.00014994731,"threshold_uncertainty_score":0.0027421117},"labels":[],"label_agreement":null},{"id":"W2587597817","doi":"10.1074/mcp.e117.067801","title":"New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Proteomics; Mass spectrometry; Publication; Scopus; Computer science; Computational biology; Data science; Chemistry; MEDLINE; Chromatography; Biology; Political science; Biochemistry","score_opus":0.07137739670215529,"score_gpt":0.2953645119563449,"score_spread":0.2239871152541896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587597817","genre_codex":"commentary","genre_gemma":"methods","domain_codex":null,"domain_gemma":"reporting","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":"reporting","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00315351,0.03696828,0.1463038,0.25860006,0.24093983,0.0939863,0.026920857,0.031437058,0.16169034],"genre_scores_gemma":[0.011722294,0.045605056,0.3281992,0.14948681,0.066370815,0.100054435,0.037312195,0.016989337,0.24425979],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.71479636,0.077484235,0.119239435,0.008466021,0.07134454,0.008669366],"domain_scores_gemma":[0.33001152,0.166287,0.09159363,0.038665026,0.35122886,0.022213984],"candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.22292246,0.0041428567,0.0073484206,0.02660822,0.0090063475,0.033589676,0.011811356,0.027918106,0.06607553],"category_scores_gemma":[0.392133,0.007882194,0.008517221,0.015417667,0.010233097,0.019820876,0.012865619,0.02080211,0.17846175],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040791847,0.00032588193,0.00049683085,0.006651924,0.000080955055,0.0004971618,0.00063602405,0.00030126798,0.002697496,0.0037042834,0.90478295,0.07941737],"study_design_scores_gemma":[0.0002633839,0.00033220212,0.0015709277,0.0055521047,0.00007264855,0.0005967658,0.0004482815,0.00033845747,0.0013481562,0.004501131,0.9848107,0.00016531604],"about_ca_topic_score_codex":0.0029815063,"about_ca_topic_score_gemma":0.007597941,"teacher_disagreement_score":0.77707756,"about_ca_system_score_codex":0.009475718,"about_ca_system_score_gemma":0.03930959,"threshold_uncertainty_score":0.95827496},"labels":[],"label_agreement":null},{"id":"W2587921824","doi":"10.1074/mcp.o116.065581","title":"Using Quantitative Spectrometry to Understand the Influence of Genetics and Nutritional Perturbations On the Virulence Potential of Staphylococcus aureus","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Virulence; Staphylococcus aureus; Microbiology; Biology; Genetics; Mass spectrometry; Computational biology; Chemistry; Bacteria; Gene; Chromatography","score_opus":0.03447340046295341,"score_gpt":0.29817448282403713,"score_spread":0.2637010823610837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587921824","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83183205,0.0039792433,0.15802282,0.0006164962,0.0001722429,0.00013092569,0.0020174796,0.0007148597,0.0025138897],"genre_scores_gemma":[0.86684895,0.003633466,0.124328315,0.0006535738,0.00006117555,0.00022574155,0.0015057096,0.00018207789,0.0025609771],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99951184,0.00008007111,0.0000286634,0.00014713027,0.00019208576,0.000040186602],"domain_scores_gemma":[0.9994413,0.0002132865,0.00015484712,0.00005115489,0.00010752718,0.000031726857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000706024,0.0006680033,0.0003575483,0.0005201094,0.00019880006,0.0005954028,0.00034393257,0.00084363815,0.00066493795],"category_scores_gemma":[0.001026325,0.00021715193,0.0003311009,0.00043271604,0.0004198992,0.00064090465,0.00041162773,0.0008070182,0.0003084601],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054369386,0.000028192831,0.0006556399,0.00006669472,0.000013271163,0.000024778219,0.00002047486,0.00019922291,0.9962302,0.00015478017,0.000041016105,0.0025113781],"study_design_scores_gemma":[0.0000089508385,0.00023940817,0.010096984,0.000018395096,0.000032592798,0.00024956695,0.000069839254,0.011499217,0.97552866,0.00066829124,0.00155834,0.00002985571],"about_ca_topic_score_codex":0.00047516442,"about_ca_topic_score_gemma":0.00048677085,"teacher_disagreement_score":0.00084363815,"about_ca_system_score_codex":0.0004830714,"about_ca_system_score_gemma":0.0002658876,"threshold_uncertainty_score":0.0037338138},"labels":[],"label_agreement":null},{"id":"W2588892107","doi":"10.1074/mcp.m116.064840","title":"Global Characterization of Protein Secretion from Human Macrophages Following Non-canonical Caspase-4/5 Inflammasome Activation","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Sigrid Juséliuksen Säätiö; Canadian Institutes of Health Research; Universitetet i Oslo; Arthritis Society","keywords":"Inflammasome; AIM2; Secretion; Biology; Pyroptosis; Proteome; Caspase 1; NLRC4; Innate immune system; Cell biology; Lipopolysaccharide; Secretory protein; Quantitative proteomics; Proteomics; Biochemistry; Inflammation; Immune system; Immunology","score_opus":0.005764541911219774,"score_gpt":0.23615784377338925,"score_spread":0.23039330186216947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588892107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99003804,0.0032609836,0.0041082934,0.0000942843,0.000050758284,0.000041792744,0.0015535027,0.00003696574,0.00081541186],"genre_scores_gemma":[0.9850847,0.0020415972,0.0043976516,0.00012792161,0.00004615836,0.00011793989,0.0040626912,0.00003133129,0.0040900107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989796,0.000013945213,0.000009452419,0.000030090194,0.000019506462,0.00002899508],"domain_scores_gemma":[0.9999373,0.000012105719,0.000010085022,0.000007917546,0.000016930178,0.000015632893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017761317,0.0003041351,0.0002147251,0.00036085397,0.00012863959,0.00028641985,0.000102899496,0.00023265842,0.0008564187],"category_scores_gemma":[0.000151747,0.00011758594,0.0002535008,0.00023891682,0.00012881204,0.00020311784,0.00021497054,0.00033027423,0.0005233293],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029068056,0.000011276574,0.00065957836,0.000041808387,0.000010759771,0.00014137472,0.00003158419,0.000015930113,0.9976483,0.000040685023,0.00004384123,0.0010642706],"study_design_scores_gemma":[0.000052695064,0.0003577446,0.05199628,0.00002493822,0.00006617773,0.0019508987,0.00014352199,0.0010357085,0.93862027,0.00018037503,0.00555908,0.000012292353],"about_ca_topic_score_codex":0.00019580757,"about_ca_topic_score_gemma":0.00018323863,"teacher_disagreement_score":0.0008564187,"about_ca_system_score_codex":0.00010975478,"about_ca_system_score_gemma":0.00010765987,"threshold_uncertainty_score":0.0028650165},"labels":[],"label_agreement":null},{"id":"W2593349649","doi":"10.1074/mcp.m116.066233","title":"Machine Learning of Global Phosphoproteomic Profiles Enables Discrimination of Direct versus Indirect Kinase Substrates","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec; Institute for Research in Immunology and Cancer","funders":"National Center for Research Resources; Genome Canada; Canadian Institutes of Health Research; National Institutes of Health; Canada Research Chairs; Fonds de Recherche du Québec - Santé","keywords":"Phosphoproteomics; Autophosphorylation; Phosphorylation; Dephosphorylation; Kinase; Cell biology; Biochemistry; Phosphatase; Substrate-level phosphorylation; Protein phosphorylation; Cyclin-dependent kinase 1; Biology; Chemistry; Protein kinase A; Cell cycle","score_opus":0.013747677087553733,"score_gpt":0.2619846309687603,"score_spread":0.24823695388120656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2593349649","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.40235376,0.0019571336,0.5879058,0.00032367272,0.000043108896,0.000092532806,0.0033151924,0.0023832151,0.0016256161],"genre_scores_gemma":[0.8052758,0.0018729961,0.18697505,0.000095001276,0.000046245208,0.00015771223,0.004388998,0.00018876187,0.0009994572],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99969983,0.000043637505,0.000018150702,0.00015819997,0.00004857625,0.000031570067],"domain_scores_gemma":[0.9995753,0.00015372703,0.00011516653,0.00007763421,0.00004655599,0.00003159589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007730419,0.0009621754,0.0009576985,0.0014211242,0.00023896921,0.0008588077,0.00038387522,0.0004090296,0.00080204767],"category_scores_gemma":[0.0010118117,0.00029113123,0.0007002926,0.0011791661,0.0003818279,0.0008568656,0.0005855134,0.0008863942,0.00045717604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062646775,0.00028056395,0.024237433,0.00055950345,0.00044676964,0.00019270845,0.00010783133,0.041295007,0.66115177,0.0029159684,0.0014877096,0.26669815],"study_design_scores_gemma":[0.000043635904,0.0005867017,0.08192705,0.00006190366,0.00026313562,0.00042709577,0.00011501409,0.6384283,0.24663943,0.024264324,0.007133925,0.00010951856],"about_ca_topic_score_codex":0.00045608805,"about_ca_topic_score_gemma":0.0007006417,"teacher_disagreement_score":0.0014211242,"about_ca_system_score_codex":0.00033306723,"about_ca_system_score_gemma":0.0003067524,"threshold_uncertainty_score":0.0040882826},"labels":[],"label_agreement":null},{"id":"W2604182146","doi":"10.1074/mcp.m117.068130","title":"Regulation of Protein Interactions by Mps One Binder (MOB1) Phosphorylation","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Hippo pathway signaling and YAP/TAZ","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Sinai Health System; University of Toronto","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Terry Fox Research Institute; Cancer Research Society; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; AGC","keywords":"Phosphorylation; Chemistry; Cell biology; Computational biology; Biology; Biochemistry","score_opus":0.01169368240876601,"score_gpt":0.23357490654181665,"score_spread":0.22188122413305064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604182146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918281,0.0013578081,0.0029309543,0.00018982397,0.000039566316,0.0000148387135,0.0008161492,0.00012828683,0.002694442],"genre_scores_gemma":[0.9917135,0.00073537556,0.001549671,0.000050127626,0.000007461124,0.000022382506,0.0007602175,0.00005978581,0.005101547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999869,0.000011118249,0.000009085794,0.000036673973,0.000043285338,0.000030871037],"domain_scores_gemma":[0.9999099,0.000011479834,0.00003171235,0.000008771059,0.000010738432,0.00002748564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013696581,0.00034113775,0.0001513522,0.00027177553,0.00031373036,0.00038784495,0.0001989364,0.00012173825,0.004375306],"category_scores_gemma":[0.00014633275,0.00011837232,0.00027273933,0.0001420353,0.000295628,0.00022794874,0.0003169931,0.00042818516,0.000996349],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009340238,0.000011216384,0.00036401875,0.000036008758,0.0000067874175,0.000045195004,0.000021784212,0.000057525096,0.997834,0.00017495269,0.00008520546,0.0012699179],"study_design_scores_gemma":[0.000006996283,0.0000362329,0.013313377,0.000003732892,0.000009583381,0.00022834125,0.000033395423,0.000759644,0.9827976,0.00008607943,0.0027179096,0.0000070523797],"about_ca_topic_score_codex":0.0011679338,"about_ca_topic_score_gemma":0.0024690665,"teacher_disagreement_score":0.004375306,"about_ca_system_score_codex":0.00053620484,"about_ca_system_score_gemma":0.00024292113,"threshold_uncertainty_score":0.014636874},"labels":[],"label_agreement":null},{"id":"W2604596468","doi":"10.1074/mcp.m116.065490","title":"MOB1 Mediated Phospho-recognition in the Core Mammalian Hippo Pathway","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Hippo pathway signaling and YAP/TAZ","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sinai Health System; Lunenfeld-Tanenbaum Research Institute","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Medical Research Council; Wellcome; Terry Fox Research Institute; Canadian Institutes of Health Research; Cancer Research Society; Wellcome Trust","keywords":"Phosphopeptide; Hippo signaling pathway; Phosphorylation; Autophosphorylation; Phosphoproteomics; YAP1; Cell biology; Biology; Kinase; Signal transducing adaptor protein; Plasma protein binding; Degron; Protein phosphorylation; Biochemistry; Transcription factor; Protein kinase A; Ubiquitin ligase; Gene; Ubiquitin","score_opus":0.025037746801116596,"score_gpt":0.24441406233829127,"score_spread":0.21937631553717468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604596468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99677473,0.0009449452,0.0012183057,0.000041476047,0.000008446009,0.000007743201,0.00017712697,0.00002301675,0.00080426],"genre_scores_gemma":[0.99577785,0.0005798905,0.0013646681,0.00004034521,0.000004234051,0.000013502217,0.0004800658,0.000013102957,0.0017263786],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993944,0.000009036468,0.0000042770494,0.00001577549,0.000014867377,0.000016576192],"domain_scores_gemma":[0.9999424,0.000006833638,0.000019817153,0.000004872927,0.000008085474,0.000018031817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008968703,0.0003063047,0.00012175788,0.00016299015,0.00014901244,0.00019210894,0.00017712085,0.0001530442,0.001095113],"category_scores_gemma":[0.00010449504,0.00011025241,0.0001784046,0.000082045895,0.00015837248,0.00016610435,0.00026052576,0.00027196162,0.0004780354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005915533,0.000005778529,0.00020687899,0.000025009344,0.0000019712763,0.000025119634,0.000007949867,0.000046143643,0.9990945,0.00006829494,0.000011285148,0.00044774442],"study_design_scores_gemma":[0.0000060450343,0.000076799704,0.010789336,0.0000059514623,0.000009691163,0.00032638176,0.000023644121,0.0012806166,0.9860395,0.00006528488,0.0013719135,0.0000049484497],"about_ca_topic_score_codex":0.00044810047,"about_ca_topic_score_gemma":0.0008105912,"teacher_disagreement_score":0.001095113,"about_ca_system_score_codex":0.0002400537,"about_ca_system_score_gemma":0.00013636635,"threshold_uncertainty_score":0.00366354},"labels":[],"label_agreement":null},{"id":"W2605035492","doi":"10.1074/mcp.m116.065706","title":"Protease-Inhibitor Interaction Predictions: Lessons on the Complexity of Protein–Protein Interactions","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Blood Services","funders":"National Institute of General Medical Sciences; National Institute of Mental Health; Canadian Institutes of Health Research","keywords":"Proteases; Computational biology; Proteome; Protease; Serpin; Biology; Protein–protein interaction; Proteomics; Protease inhibitor (pharmacology); Bioinformatics; Biochemistry; Enzyme; Genetics; Gene","score_opus":0.07487400140992771,"score_gpt":0.32537670001696584,"score_spread":0.2505026986070381,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605035492","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.28289974,0.010637968,0.6927764,0.0041374206,0.00014611319,0.00007619594,0.0023296543,0.001941584,0.005054991],"genre_scores_gemma":[0.8320787,0.0038144502,0.15949214,0.0004750477,0.0001509769,0.00006674204,0.0030690068,0.0002559882,0.00059701275],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99828184,0.00054182357,0.00014203173,0.00050749164,0.0004370398,0.00008991559],"domain_scores_gemma":[0.9924028,0.005789798,0.00058093027,0.0006002828,0.00044995823,0.00017620936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035879523,0.0015346776,0.0013135812,0.0016369263,0.0005480285,0.00217233,0.0015548015,0.0011759542,0.0011543229],"category_scores_gemma":[0.011557027,0.0006468543,0.0011170381,0.0012786668,0.0009895251,0.003234467,0.0012240374,0.0021983373,0.0006912371],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065332145,0.0003687885,0.11066892,0.0019828777,0.0012210129,0.0008318643,0.00048104566,0.5678411,0.045929004,0.03538997,0.009767092,0.22486497],"study_design_scores_gemma":[0.000020011845,0.000085865766,0.010834867,0.000098494515,0.00009837257,0.00035987035,0.00010591102,0.9229201,0.011937226,0.049113367,0.004374955,0.000050914503],"about_ca_topic_score_codex":0.0020191004,"about_ca_topic_score_gemma":0.0020008942,"teacher_disagreement_score":0.0035879523,"about_ca_system_score_codex":0.00078945584,"about_ca_system_score_gemma":0.00083758944,"threshold_uncertainty_score":0.018975079},"labels":[],"label_agreement":null},{"id":"W2606309635","doi":"10.1074/mcp.m116.066803","title":"Neprosin, a Selective Prolyl Endoprotease for Bottom-up Proteomics and Histone Mapping","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; Lunenfeld-Tanenbaum Research Institute; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Trypsin; Proteomics; Peptide; Electron-transfer dissociation; Chemistry; Histone; Biochemistry; Peptide sequence; Proteolysis; Enzyme; Gene","score_opus":0.014743030951274074,"score_gpt":0.27730353088397125,"score_spread":0.2625604999326972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606309635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4778384,0.043190982,0.46076357,0.0009187331,0.00028948067,0.0005967881,0.0034500612,0.0018147277,0.0111372685],"genre_scores_gemma":[0.59327644,0.020021725,0.36480692,0.00049307925,0.00007910128,0.0002827576,0.0055559883,0.00027763945,0.015206388],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996,0.000056519468,0.000030440866,0.00012757294,0.00014424825,0.000041240808],"domain_scores_gemma":[0.9998337,0.000033852826,0.00004043034,0.000029928598,0.000035692854,0.000026428803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055215124,0.00073122536,0.00037466575,0.00039753754,0.0002796897,0.0006450784,0.00042690343,0.00046538425,0.00069324294],"category_scores_gemma":[0.0003658693,0.00028263783,0.00031480961,0.0004403409,0.00029824747,0.0005388072,0.0003443888,0.0008063103,0.00081732235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041130403,0.000009874977,0.00033735207,0.000102423226,0.000008805799,0.000062302475,0.000017166269,0.00007652483,0.9897329,0.0001952109,0.00014982634,0.00926629],"study_design_scores_gemma":[0.000005042142,0.00008624937,0.0018257607,0.000012715099,0.000014011066,0.00075136876,0.000014967481,0.00079376553,0.98410034,0.00013169357,0.012253961,0.00001016373],"about_ca_topic_score_codex":0.00049216737,"about_ca_topic_score_gemma":0.00095362484,"teacher_disagreement_score":0.00073122536,"about_ca_system_score_codex":0.0003170339,"about_ca_system_score_gemma":0.000282097,"threshold_uncertainty_score":0.0029200912},"labels":[],"label_agreement":null},{"id":"W2613095260","doi":"10.1074/mcp.m117.068080","title":"Translating Divergent Environmental Stresses into a Common Proteome Response through Hik33 in a Model Cyanobacterium","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Genetics","funders":"National Natural Science Foundation of China","keywords":"Proteome; Synechocystis; Downregulation and upregulation; Biology; Cellular stress response; Proteases; Proteomics; Osmotic shock; Cell biology; Heat shock protein; Unfolded protein response; Response regulator; Abiotic stress; Abiotic component; Fight-or-flight response; Cyanobacteria; Biochemistry; Gene; Genetics; Ecology; Bacteria; Enzyme; Bacterial protein","score_opus":0.01027994810937955,"score_gpt":0.24706208647909586,"score_spread":0.23678213836971632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2613095260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985259,0.000070909875,0.00083128863,0.00010939876,0.000008438936,0.00000676229,0.0001773255,0.0000321014,0.0002379719],"genre_scores_gemma":[0.99855167,0.0000662739,0.00075075496,0.00004395045,0.0000011314994,0.000009924644,0.00019064569,0.000018135579,0.00036743484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998895,0.000013455051,0.000008322733,0.000030157795,0.000027551003,0.00003101491],"domain_scores_gemma":[0.9998932,0.000020359286,0.000021957989,0.000018954965,0.000014965653,0.0000305741],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021732923,0.00035650458,0.00035569284,0.00008491203,0.00037421225,0.0003896065,0.00033124074,0.00039273922,0.0005389834],"category_scores_gemma":[0.00022508623,0.00016181868,0.00023767515,0.0001728647,0.00034288084,0.00042431895,0.00057643757,0.00061253447,0.00015448971],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018097568,0.000014096155,0.00052211963,0.000019115232,0.000003528491,0.00007238623,0.00001850238,0.00039574874,0.99822456,0.00009948487,0.000026919626,0.00042258413],"study_design_scores_gemma":[0.000047807953,0.00025747536,0.02341417,0.0000061495057,0.00002329656,0.00016233147,0.00029881427,0.011536539,0.9630545,0.00031354197,0.00085764413,0.000027816914],"about_ca_topic_score_codex":0.0063445857,"about_ca_topic_score_gemma":0.0055062203,"teacher_disagreement_score":0.0063445857,"about_ca_system_score_codex":0.0010091566,"about_ca_system_score_gemma":0.00081240345,"threshold_uncertainty_score":0.012615323},"labels":[],"label_agreement":null},{"id":"W2731009140","doi":"10.1074/mcp.m116.066274","title":"Spatiotemporal Proteomic Profiling of Human Cerebral Development","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Princess Margaret Cancer Centre; Hospital for Sick Children; University Health Network","funders":"","keywords":"Profiling (computer programming); Computational biology; Human brain; Computer science; Neuroscience; Biology","score_opus":0.01803492200764802,"score_gpt":0.27801436188791984,"score_spread":0.25997943988027183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2731009140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92180115,0.011651634,0.05109236,0.00027198525,0.000063314525,0.00014988042,0.0077637862,0.00037091516,0.0068350355],"genre_scores_gemma":[0.94954604,0.008182565,0.030161338,0.00023263975,0.000023622026,0.0001535202,0.006942976,0.000090476424,0.004666749],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99992716,0.000007629707,0.000004981915,0.00002221262,0.000026144573,0.000011830698],"domain_scores_gemma":[0.99993265,0.000016416054,0.000011764954,0.000010512026,0.00001963452,0.000008893892],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020027759,0.00018502028,0.00016416541,0.00039392017,0.0001351825,0.00029747706,0.00015465199,0.00012659017,0.0006065741],"category_scores_gemma":[0.00019497443,0.00007294457,0.00012115795,0.00030318782,0.00012185138,0.00012931268,0.00020911165,0.00026338015,0.0002545017],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007120768,0.000009413583,0.0008480026,0.000045795674,0.000012077647,0.00008847086,0.000018296227,0.00012840335,0.9932914,0.00009899019,0.00015951581,0.0052284845],"study_design_scores_gemma":[0.000006648993,0.00009872211,0.054102585,0.000018496183,0.000054010045,0.0011549961,0.00008008374,0.0011023814,0.93682414,0.00022999244,0.006318119,0.000009772492],"about_ca_topic_score_codex":0.0012362949,"about_ca_topic_score_gemma":0.002826595,"teacher_disagreement_score":0.0012362949,"about_ca_system_score_codex":0.00024084603,"about_ca_system_score_gemma":0.000268586,"threshold_uncertainty_score":0.0024582744},"labels":[],"label_agreement":null},{"id":"W2734642647","doi":"10.1074/mcp.m116.063727","title":"A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Agence Nationale de la Recherche","keywords":"Xyloglucan; Cell wall; Proteome; Hemicellulose; Secondary cell wall; Biochemistry; Biology; Chemistry; Cell biology; Cellulose","score_opus":0.018726532159348556,"score_gpt":0.2223743514428698,"score_spread":0.20364781928352124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2734642647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898437,0.0009579863,0.0034580661,0.00004711876,0.000004001582,0.000019049252,0.004798317,0.00008490805,0.00078682025],"genre_scores_gemma":[0.9447847,0.0014189557,0.018145313,0.00010610227,0.000019174848,0.000091010625,0.032853927,0.000045246215,0.0025355304],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993706,0.0000054495786,0.000005437638,0.000028912078,0.00001204644,0.000011095225],"domain_scores_gemma":[0.9999378,0.000010261031,0.000016239745,0.000006294075,0.000013074751,0.000016345466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012079987,0.0004547043,0.00022738871,0.00066092197,0.00026410967,0.00027546895,0.00015059742,0.00025942054,0.0012683771],"category_scores_gemma":[0.00012065322,0.00013536749,0.0003204012,0.0005231934,0.00011056414,0.00037623578,0.00016728738,0.00020812545,0.00036731595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000098661956,0.000008626809,0.00064067595,0.00003979899,0.000006685993,0.00005092903,0.0000154928,0.000038311853,0.9971156,0.000023284676,0.00002929605,0.0019326832],"study_design_scores_gemma":[0.000030187774,0.00042448202,0.35152197,0.000034409364,0.00014472191,0.0020489711,0.0001462386,0.0034260575,0.6350218,0.00037580237,0.0067964415,0.00002889694],"about_ca_topic_score_codex":0.0007992355,"about_ca_topic_score_gemma":0.0011861513,"teacher_disagreement_score":0.0012683771,"about_ca_system_score_codex":0.00018630017,"about_ca_system_score_gemma":0.00018338162,"threshold_uncertainty_score":0.004243195},"labels":[],"label_agreement":null},{"id":"W2742197765","doi":"10.1074/mcp.m116.064451","title":"Identification of the SOX2 Interactome by BioID Reveals EP300 as a Mediator of SOX2-dependent Squamous Differentiation and Lung Squamous Cell Carcinoma Growth","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Princess Margaret Cancer Centre","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Institute of Cancer Research; Ontario Institute for Cancer Research; Ontario Ministry of Research, Innovation and Science","keywords":"SOX2; Biology; Cancer research; Cancer stem cell; Lung cancer; Stem cell; Pathology; Cell biology; Medicine; Transcription factor; Genetics; Gene","score_opus":0.0044429863352092895,"score_gpt":0.21103196320847137,"score_spread":0.20658897687326208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2742197765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9680139,0.0040756627,0.017776657,0.0006623774,0.00006684433,0.000055182376,0.004738382,0.00021170116,0.004399267],"genre_scores_gemma":[0.9597782,0.0017684404,0.01962415,0.00034422125,0.000037522914,0.000074077114,0.011969524,0.000076956494,0.0063270396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985754,0.000011857955,0.00000936554,0.00004329591,0.000054404656,0.000023561453],"domain_scores_gemma":[0.9998627,0.000031865493,0.000030462023,0.00001780544,0.000015782416,0.00004136455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017731095,0.00045698974,0.0003826308,0.0007940018,0.00039396939,0.00044662264,0.00026615136,0.00030511757,0.003413421],"category_scores_gemma":[0.00019858597,0.0001655675,0.0005477974,0.00044386578,0.00028719698,0.00031326117,0.0003071712,0.00058656296,0.0011906232],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012103422,0.000012045655,0.0007436335,0.000033270288,0.000010474283,0.00009689009,0.000012504005,0.00005592689,0.9967976,0.00009706063,0.00008456854,0.0019350153],"study_design_scores_gemma":[0.000026475243,0.00014441373,0.049610518,0.000011420738,0.000042987867,0.0011807841,0.000076296245,0.0032541563,0.9392497,0.00036699953,0.0060201464,0.000016176355],"about_ca_topic_score_codex":0.0008634449,"about_ca_topic_score_gemma":0.0024445995,"teacher_disagreement_score":0.003413421,"about_ca_system_score_codex":0.000516179,"about_ca_system_score_gemma":0.0003127273,"threshold_uncertainty_score":0.011418998},"labels":[],"label_agreement":null},{"id":"W2759490272","doi":"10.1074/mcp.mr117.000068","title":"Proteomics Identifies Golgi phosphoprotein 3 (GOLPH3) with A Link Between Golgi Structure, Cancer, DNA Damage and Protection from Cell Death","year":2017,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"","keywords":"Golgi apparatus; Proteomics; Phosphoprotein; Cell biology; Programmed cell death; DNA damage; Chemistry; Biology; DNA; Apoptosis; Phosphorylation; Biochemistry; Endoplasmic reticulum; Gene","score_opus":0.02819350962445023,"score_gpt":0.2821688564815108,"score_spread":0.2539753468570606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2759490272","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.66539794,0.19825815,0.011988159,0.008105571,0.00094429345,0.00059940084,0.0667627,0.0015353509,0.04640835],"genre_scores_gemma":[0.6740359,0.17118606,0.024636261,0.0049688956,0.00022369083,0.00031020463,0.074734636,0.00031387064,0.049590424],"study_design_codex":"bench_or_experimental","study_design_gemma":"systematic_review","domain_scores_codex":[0.99989665,0.000005256634,0.0000058464975,0.000018147126,0.00005387672,0.000020208241],"domain_scores_gemma":[0.99990165,0.000012972398,0.000029697598,0.0000043497776,0.000027355865,0.000023970255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013280098,0.00053231174,0.00070389896,0.0025548914,0.00057233544,0.00064743776,0.0003689864,0.0007010525,0.0074756583],"category_scores_gemma":[0.00023454806,0.00019032601,0.000806228,0.0035033987,0.00025180832,0.0004996765,0.0005002565,0.0005091553,0.0034707433],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007220379,0.000081591534,0.0038555046,0.0038481506,0.00013740665,0.0025905825,0.00011721313,0.00013389645,0.9263574,0.00085211615,0.009985727,0.051318523],"study_design_scores_gemma":[0.00017657643,0.0010337691,0.20912777,0.00083899644,0.00089468335,0.020902308,0.00084988103,0.0012592457,0.54893833,0.0025102259,0.21334457,0.00012367706],"about_ca_topic_score_codex":0.0034538615,"about_ca_topic_score_gemma":0.006840648,"teacher_disagreement_score":0.0074756583,"about_ca_system_score_codex":0.0009869509,"about_ca_system_score_gemma":0.00079321454,"threshold_uncertainty_score":0.0250085},"labels":[],"label_agreement":null},{"id":"W2766450105","doi":"10.1074/mcp.ra117.000124","title":"Novel Sarcopenia-related Alterations in Sarcomeric Protein Post-translational Modifications (PTMs) in Skeletal Muscles Identified by Top-down Proteomics","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Muscle metabolism and nutrition","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; National Institute on Aging; National Institutes of Health","keywords":"Sarcopenia; Proteomics; Posttranslational modification; Skeletal muscle; Computational biology; Bioinformatics; Cell biology; Chemistry; Medicine; Biology; Internal medicine; Biochemistry; Gene","score_opus":0.008726255116790428,"score_gpt":0.2386414985295802,"score_spread":0.22991524341278977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2766450105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96850634,0.011337232,0.016215375,0.00027893813,0.00018065075,0.000107932414,0.0019736234,0.0002308433,0.001169049],"genre_scores_gemma":[0.93858624,0.015140517,0.03575667,0.00080303685,0.00009143726,0.0001795502,0.0044054203,0.00015311166,0.0048840004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983907,0.0000131993775,0.00001736141,0.000055495722,0.000047484395,0.000027370332],"domain_scores_gemma":[0.9998282,0.00001834557,0.00007719082,0.000012733808,0.00003781599,0.000025664927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026683303,0.0008738134,0.00045221866,0.00051614066,0.00025852327,0.00032467165,0.0002254129,0.0003700481,0.00060232513],"category_scores_gemma":[0.0002113289,0.00026282578,0.00068260304,0.00036927089,0.00026222257,0.00032982777,0.00034490973,0.0007211473,0.00023405056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009076693,0.000014183679,0.00063739996,0.000120640514,0.000027339574,0.00008987499,0.00001979076,0.000024040224,0.99713,0.00003293011,0.00004542042,0.0017675795],"study_design_scores_gemma":[0.00002981113,0.0004526612,0.13139698,0.00005557546,0.00028419233,0.0015628075,0.00011388957,0.0016348339,0.8583614,0.00020055087,0.0058741113,0.000033297278],"about_ca_topic_score_codex":0.0006883312,"about_ca_topic_score_gemma":0.0012880714,"teacher_disagreement_score":0.0008738134,"about_ca_system_score_codex":0.0001975126,"about_ca_system_score_gemma":0.00022681727,"threshold_uncertainty_score":0.0020149946},"labels":[],"label_agreement":null},{"id":"W2767715277","doi":"10.1074/mcp.m116.065755","title":"Spatially-Resolved Top-down Proteomics Bridged to MALDI MS Imaging Reveals the Molecular Physiome of Brain Regions","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Institut National Du Cancer; Institut Universitaire de France; Canada Research Chairs; Fonds de recherche du Québec – Nature et technologies; Direction Générale de l’offre de Soins; Institut National de la Santé et de la Recherche Médicale","keywords":"Proteomics; Proteome; Computational biology; Mass spectrometry imaging; Biology; Chemistry; Bioinformatics; Mass spectrometry; Genetics; Gene","score_opus":0.01004576310731786,"score_gpt":0.26379603876678853,"score_spread":0.25375027565947067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2767715277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96781474,0.0015290431,0.029139612,0.00007282826,0.000012306752,0.000016941418,0.00040658592,0.0001365858,0.00087132805],"genre_scores_gemma":[0.96107733,0.0016270076,0.035183117,0.000076772085,0.000012377349,0.00003890034,0.00060994655,0.000047767397,0.001326673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987805,0.000008458886,0.000005320203,0.00004804838,0.000036540663,0.000023468465],"domain_scores_gemma":[0.9999052,0.000016160564,0.000027022717,0.000015910367,0.00002150959,0.000014225611],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015742831,0.00037066088,0.00025402632,0.0004855449,0.0001802403,0.00041840185,0.0002954646,0.00029063068,0.00045745895],"category_scores_gemma":[0.00017410601,0.0002013406,0.00028165494,0.00032037983,0.00030367382,0.00033284407,0.00028957136,0.00048059813,0.00025946877],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020477004,0.000002786845,0.00020242737,0.000012237177,0.0000032427763,0.000020593528,0.00000780609,0.00003860197,0.99882716,0.000041616815,0.000008097156,0.00081489934],"study_design_scores_gemma":[0.00000543432,0.00009263447,0.032699015,0.0000058968562,0.000036955982,0.0007360349,0.00006323783,0.0022260936,0.9629414,0.0003220459,0.00085917086,0.000012191904],"about_ca_topic_score_codex":0.0007606543,"about_ca_topic_score_gemma":0.0013044986,"teacher_disagreement_score":0.0007606543,"about_ca_system_score_codex":0.00021371875,"about_ca_system_score_gemma":0.00023181502,"threshold_uncertainty_score":0.0015506148},"labels":[],"label_agreement":null},{"id":"W2771253402","doi":"10.1074/mcp.ra117.000114","title":"Interactome Mapping Uncovers a General Role for Numb in Protein Kinase Regulation","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Interactome; NUMB; Computational biology; Kinase; Cell biology; Biology; Biochemistry; Gene","score_opus":0.01097811590895601,"score_gpt":0.24627300151349085,"score_spread":0.23529488560453485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2771253402","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9713793,0.0039857905,0.021696616,0.00023584138,0.000010518303,0.000024796696,0.00082055177,0.00012730794,0.0017192813],"genre_scores_gemma":[0.9716647,0.0024987594,0.0229262,0.00010542753,0.000015671598,0.000039177743,0.0012668412,0.000033443743,0.0014497869],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998419,0.000019707173,0.000009859861,0.00006234787,0.000049283797,0.000016855345],"domain_scores_gemma":[0.9998957,0.000026989981,0.00003161235,0.00001305337,0.000011127287,0.000021542994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018487056,0.00030386786,0.00037032904,0.00066325476,0.00032326882,0.00046727835,0.00018484467,0.00023658134,0.0010297186],"category_scores_gemma":[0.00024723876,0.00017196036,0.00031283882,0.00045674128,0.00023832642,0.0005784144,0.000418962,0.00038709067,0.00036349392],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008580008,0.000009573384,0.0027429238,0.00006271135,0.000018620343,0.00010517158,0.000019200443,0.0001703311,0.99282235,0.00023091953,0.000037062062,0.0036954382],"study_design_scores_gemma":[0.00001973503,0.00017519928,0.18577832,0.000029338413,0.000100364494,0.0024600774,0.00017385029,0.014485551,0.78601635,0.0020563472,0.008684163,0.000020621885],"about_ca_topic_score_codex":0.00038607095,"about_ca_topic_score_gemma":0.0007481566,"teacher_disagreement_score":0.0010297186,"about_ca_system_score_codex":0.00033968838,"about_ca_system_score_gemma":0.00016830656,"threshold_uncertainty_score":0.0034447908},"labels":[],"label_agreement":null},{"id":"W2783734426","doi":"10.1074/mcp.ra117.000574","title":"Cross-species Comparison of Proteome Turnover Kinetics","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"National Institute of General Medical Sciences; National Institute on Aging; National Institutes of Health; National Science Foundation","keywords":"Proteome; Protein turnover; Kinetics; Proteomics; Biology; Biochemistry; Computational biology; Cell biology; Chemistry; Protein biosynthesis; Gene","score_opus":0.016889784934272355,"score_gpt":0.2968825017099803,"score_spread":0.279992716775708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2783734426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96835494,0.0028280292,0.025298245,0.00004832577,0.000097250086,0.00008054461,0.00152456,0.00015554279,0.0016126084],"genre_scores_gemma":[0.97827554,0.0007494058,0.01649577,0.00009772701,0.00002366896,0.00020337895,0.002996133,0.00011619845,0.0010422117],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998164,0.00028240192,0.00019911872,0.0007308021,0.00049677177,0.00012699497],"domain_scores_gemma":[0.9963527,0.00089111546,0.0009273587,0.0005299901,0.0011304596,0.0001683189],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001989882,0.0004522029,0.0006221508,0.0017751355,0.0005407685,0.0005744187,0.00040285164,0.0004735326,0.00080038747],"category_scores_gemma":[0.003643026,0.00027426242,0.00063714845,0.0012189494,0.00034815836,0.0004770124,0.000805157,0.00066635926,0.00028566006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004646371,0.00009103697,0.051672556,0.00033329614,0.0006965534,0.00020804952,0.0004291046,0.0007630822,0.93100816,0.0003389751,0.00023956745,0.013754992],"study_design_scores_gemma":[0.000012743426,0.000558801,0.6826145,0.000037844657,0.0004271649,0.0016724596,0.00030036853,0.009234253,0.29926848,0.0007137093,0.0050924653,0.0000671925],"about_ca_topic_score_codex":0.00073409494,"about_ca_topic_score_gemma":0.0010473586,"teacher_disagreement_score":0.001989882,"about_ca_system_score_codex":0.0003080677,"about_ca_system_score_gemma":0.00019990116,"threshold_uncertainty_score":0.010523677},"labels":[],"label_agreement":null},{"id":"W2789961905","doi":"10.1074/mcp.ra117.000447","title":"Promyelocytic Leukemia Protein (PML) Requirement for Interferon-induced Global Cellular SUMOylation","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec; Institute for Research in Immunology and Cancer","funders":"Natural Sciences and Engineering Research Council of Canada; Agence Nationale de Recherches sur le Sida et les Hépatites Virales; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Agence Nationale de la Recherche","keywords":"SUMO protein; Promyelocytic leukemia protein; Biology; Gene isoform; Acute promyelocytic leukemia; Interferon; RNA splicing; Cell biology; Nuclear protein; Alternative splicing; Molecular biology; Ubiquitin; Cell culture; Gene; Genetics; Retinoic acid; Transcription factor; RNA","score_opus":0.018873555112500467,"score_gpt":0.2564164491250365,"score_spread":0.23754289401253606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789961905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950288,0.0008877186,0.002339842,0.000058811762,0.000010581054,0.000010726986,0.00042790687,0.00004445322,0.00119115],"genre_scores_gemma":[0.99540734,0.00056927826,0.0018087794,0.000021673362,0.000004281305,0.000015298787,0.00075484783,0.000010289551,0.0014082707],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999181,0.000009638468,0.000008570301,0.000025097988,0.000021652682,0.000016826483],"domain_scores_gemma":[0.9999466,0.0000054004286,0.000016950384,0.000010524292,0.0000062320537,0.000014310647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009167285,0.00024924704,0.00015107247,0.00014442764,0.00015416156,0.00031959734,0.00009922745,0.00012451758,0.00079275214],"category_scores_gemma":[0.00007050333,0.00010058002,0.00017157727,0.00019061206,0.0001486483,0.00016672001,0.00021200944,0.0002686211,0.00036336796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057465786,0.000007544229,0.0003878351,0.000013746459,0.000003651426,0.000046740613,0.0000051289526,0.000023459372,0.9983246,0.00010857543,0.00001403468,0.0010071312],"study_design_scores_gemma":[0.00001260323,0.000091444235,0.018119503,0.0000056305603,0.000019869914,0.00083853514,0.00003028188,0.00054398045,0.9768422,0.00023721861,0.0032563203,0.0000023970583],"about_ca_topic_score_codex":0.0001870663,"about_ca_topic_score_gemma":0.0004776655,"teacher_disagreement_score":0.00079275214,"about_ca_system_score_codex":0.00024044173,"about_ca_system_score_gemma":0.00021511671,"threshold_uncertainty_score":0.0026519895},"labels":[],"label_agreement":null},{"id":"W2792514932","doi":"10.1074/mcp.ra118.000643","title":"Phosphoproteomics Analysis Identifies Novel Candidate Substrates of the Nonreceptor Tyrosine Kinase, Src-related Kinase Lacking C-terminal Regulatory Tyrosine and N-terminal Myristoylation Sites (SRMS)","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phosphoproteomics; Tyrosine kinase; Proto-oncogene tyrosine-protein kinase Src; Biochemistry; Biology; Kinome; Myristoylation; Autophosphorylation; Receptor tyrosine kinase; SH3 domain; Kinase; Cell biology; Chemistry; Phosphorylation; Signal transduction; Protein kinase A; Protein phosphorylation","score_opus":0.008072007124041932,"score_gpt":0.22714607436328677,"score_spread":0.21907406723924483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792514932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891994,0.0021840518,0.0057086083,0.00016571279,0.000040663686,0.000027070811,0.0011372645,0.00007145253,0.0014657312],"genre_scores_gemma":[0.98475826,0.0015913171,0.008368021,0.00010910429,0.000022602846,0.000025747517,0.0025944735,0.000024776029,0.0025057015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999877,0.00001124264,0.000009456505,0.00004088053,0.000036090052,0.000025313944],"domain_scores_gemma":[0.9998996,0.000015868032,0.000032415453,0.000010404108,0.000015238119,0.00002636738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019115425,0.0005231071,0.00031905054,0.0003947118,0.00027453894,0.0004094111,0.00023169965,0.00030266304,0.0016963449],"category_scores_gemma":[0.00019652845,0.0001274732,0.0003731103,0.00025449562,0.00021000642,0.0003218272,0.00019812488,0.0004264076,0.00055666984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086630105,0.0000133482745,0.00061012374,0.000036427984,0.00000989469,0.000087769964,0.000007121483,0.000032801465,0.9979913,0.00007339703,0.000029762461,0.0010215584],"study_design_scores_gemma":[0.000018885507,0.00018570678,0.04230447,0.0000081504595,0.00007567204,0.0020703522,0.00006599729,0.0018649081,0.9501708,0.00023787237,0.0029840379,0.000013112497],"about_ca_topic_score_codex":0.00044646364,"about_ca_topic_score_gemma":0.0012203994,"teacher_disagreement_score":0.0016963449,"about_ca_system_score_codex":0.0002241136,"about_ca_system_score_gemma":0.00025986342,"threshold_uncertainty_score":0.005674839},"labels":[],"label_agreement":null},{"id":"W2793255347","doi":"10.1074/mcp.tir117.000385","title":"Extended Linkers Improve the Detection of Protein-protein Interactions (PPIs) by Dihydrofolate Reductase Protein-fragment Complementation Assay (DHFR PCA) in Living Cells","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; PROTEO","funders":"Institute of Genetics; Canadian Institutes of Health Research","keywords":"Protein-fragment complementation assay; Dihydrofolate reductase; Fusion protein; Protein–protein interaction; Chemistry; Cell biology; Computational biology; Biochemistry; Biology; Complementation; Enzyme; Phenotype","score_opus":0.007524402206122979,"score_gpt":0.23663793467212346,"score_spread":0.22911353246600047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793255347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95128685,0.0011728236,0.045721382,0.00016538287,0.000023063021,0.000045852386,0.0003567762,0.00039781,0.0008301136],"genre_scores_gemma":[0.9300539,0.0011272678,0.06454393,0.00019815598,0.000016458373,0.00009314313,0.0011148708,0.00022054432,0.0026317742],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993849,0.00016107185,0.000055201952,0.00013625776,0.00018906768,0.00007353878],"domain_scores_gemma":[0.99930227,0.00029672793,0.00018937865,0.00006866943,0.00006486374,0.00007806061],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007447302,0.00066279,0.0004798156,0.0002899949,0.0001450379,0.00054929906,0.0003902274,0.0006351265,0.0012619363],"category_scores_gemma":[0.0007235476,0.0003641253,0.0003808075,0.00028596228,0.0003326198,0.000749245,0.0006168975,0.000786306,0.0005749812],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025184921,0.000016443968,0.00008884288,0.00001535239,0.0000056978884,0.000016290516,0.000007271936,0.00008403072,0.99921334,0.00003065468,0.000010755346,0.00048617437],"study_design_scores_gemma":[0.0000056663616,0.00010889275,0.0010906045,0.0000028168477,0.00001407123,0.00010273101,0.000011097139,0.00081966346,0.9971011,0.0000371226,0.0007012936,0.0000048110337],"about_ca_topic_score_codex":0.00039037436,"about_ca_topic_score_gemma":0.0007897162,"teacher_disagreement_score":0.0012619363,"about_ca_system_score_codex":0.00040979005,"about_ca_system_score_gemma":0.00016905591,"threshold_uncertainty_score":0.004221618},"labels":[],"label_agreement":null},{"id":"W2793880089","doi":"10.1074/mcp.tir117.000302","title":"Simple, scalable, and ultrasensitive tip-based identification of protease substrates","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Ministerium für Kultur und Wissenschaft des Landes Nordrhein-Westfalen; KU Leuven; Bundesministerium für Bildung und Forschung","keywords":"Chemistry; Chromatography; Ion chromatography; Amine gas treating; Organic chemistry","score_opus":0.007085066424742169,"score_gpt":0.2415727340235628,"score_spread":0.23448766759882064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793880089","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.28716016,0.008791028,0.680763,0.0011944543,0.0006034928,0.0013308107,0.0039200257,0.006040409,0.010196559],"genre_scores_gemma":[0.41219032,0.0058285124,0.5623351,0.0011331936,0.00015972735,0.0010959867,0.0060960543,0.00037480827,0.010786313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990402,0.0001029788,0.00005641772,0.00024316537,0.0004177178,0.00013956225],"domain_scores_gemma":[0.9995378,0.000121564684,0.0000663174,0.000081741244,0.00012097705,0.000071626986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000659576,0.0010874283,0.0008203932,0.0007880845,0.0003804907,0.0009540656,0.0011135378,0.0011541685,0.0013093719],"category_scores_gemma":[0.00095177314,0.0004584416,0.00057634007,0.00049738033,0.00046640282,0.0007726961,0.0011838169,0.0020949945,0.0024291917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041719,0.000031869225,0.00010894375,0.0000801979,0.000009271317,0.000051050298,0.000020536268,0.00013386298,0.9921639,0.00022988644,0.0005675345,0.00656123],"study_design_scores_gemma":[0.000012346261,0.000080126745,0.00062210107,0.000013676966,0.000011448006,0.00023855724,0.000029050721,0.00565165,0.9867215,0.00017832012,0.006415057,0.00002621052],"about_ca_topic_score_codex":0.0005328219,"about_ca_topic_score_gemma":0.00088300003,"teacher_disagreement_score":0.0013093719,"about_ca_system_score_codex":0.00039431505,"about_ca_system_score_gemma":0.00042620464,"threshold_uncertainty_score":0.0043802857},"labels":[],"label_agreement":null},{"id":"W2799405617","doi":"10.1074/mcp.ra118.000767","title":"Rapid Remodeling of the Host Epithelial Cell Proteome by the Listeriolysin O (LLO) Pore-forming Toxin","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"European Research Council; Agence Nationale de la Recherche; Howard Hughes Medical Institute","keywords":"Proteome; Biology; Listeria monocytogenes; Listeriolysin O; Cell biology; Host–pathogen interaction; Cell; Microbiology; Gene; Bacteria; Virulence; Biochemistry; Genetics; Listeria","score_opus":0.02281956988412944,"score_gpt":0.2487185329151553,"score_spread":0.22589896303102586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2799405617","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960842,0.0018237272,0.0014963819,0.000048751856,0.000014013672,0.000009640222,0.0001627025,0.000025396568,0.00033525212],"genre_scores_gemma":[0.9963703,0.0009525318,0.0012426615,0.00009080025,0.000009780602,0.00002113674,0.00042083,0.000012891879,0.00087923947],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990594,0.000018398405,0.000008284194,0.000020766369,0.00001968931,0.000026961497],"domain_scores_gemma":[0.9999269,0.00001382199,0.000023136883,0.00001077602,0.000009104848,0.00001634055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001051269,0.0002095142,0.00017307086,0.00010179404,0.000088632776,0.00023349132,0.00007892521,0.00020120396,0.0004920074],"category_scores_gemma":[0.00008293896,0.000109873836,0.00024620563,0.00008638523,0.00013843257,0.0001550693,0.00020535983,0.00031198282,0.00018368034],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003738734,0.00000369833,0.00010568958,0.000008163448,0.000001540663,0.000017124488,0.0000027304673,0.000006198477,0.999658,0.0000076565575,0.0000037627049,0.00014802458],"study_design_scores_gemma":[0.000011219178,0.00025591487,0.022396013,0.000004820295,0.000014630935,0.00037097055,0.000043098084,0.0004085092,0.97521406,0.00003509833,0.0012409206,0.0000047012386],"about_ca_topic_score_codex":0.00012429479,"about_ca_topic_score_gemma":0.00015608963,"teacher_disagreement_score":0.0004920074,"about_ca_system_score_codex":0.00015232977,"about_ca_system_score_gemma":0.00009738786,"threshold_uncertainty_score":0.0016459227},"labels":[],"label_agreement":null},{"id":"W2803980412","doi":"10.1074/mcp.ra118.000766","title":"Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Proteoglycans and glycosaminoglycans research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health","keywords":"Proteoglycan; Glycosylation; Glycan; Decorin; Aggrecan; Glycomics; Proteomics; Biochemistry; Mucin; Cell biology; Biology; Glycoprotein; Chemistry; Computational biology; Extracellular matrix; Gene","score_opus":0.03286926116269752,"score_gpt":0.27369375742807084,"score_spread":0.24082449626537333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2803980412","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2178656,0.0032277259,0.7673091,0.0005751693,0.00021433219,0.00041832105,0.0031625158,0.0034505106,0.00377671],"genre_scores_gemma":[0.22541389,0.0020646881,0.7618442,0.00093348563,0.00009138014,0.0004998345,0.005169674,0.0009834368,0.0029993502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908316,0.00012789562,0.00007084248,0.00031173963,0.00029069997,0.000115667746],"domain_scores_gemma":[0.9992304,0.000248699,0.00010837028,0.00014131387,0.00015116774,0.00012001471],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011303427,0.0011374442,0.00085231365,0.001171621,0.0005947225,0.0012475537,0.000901552,0.0011348709,0.001096555],"category_scores_gemma":[0.0012859115,0.0007100716,0.0008809189,0.00078846683,0.00057357916,0.0007085159,0.0016544177,0.0019310032,0.0011507577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010772049,0.000031422198,0.00060229556,0.00013416634,0.00004995285,0.00012447377,0.00010864365,0.0004372662,0.98188454,0.0003303551,0.0005163647,0.01567285],"study_design_scores_gemma":[0.00005979104,0.00027974058,0.0061317114,0.000042904518,0.00010570511,0.0014138737,0.000133256,0.03392792,0.9334248,0.002171967,0.022203622,0.00010477224],"about_ca_topic_score_codex":0.0009113307,"about_ca_topic_score_gemma":0.0020248534,"teacher_disagreement_score":0.0012475537,"about_ca_system_score_codex":0.00037096132,"about_ca_system_score_gemma":0.00071044895,"threshold_uncertainty_score":0.005977869},"labels":[],"label_agreement":null},{"id":"W2866029465","doi":"10.1074/mcp.ra118.000689","title":"Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval; Hôtel-Dieu de Québec; PROTEO; Centre hospitalier universitaire de Québec","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Cytokinesis; Abscission; Cell biology; Biology; Computational biology; Cell; Cell division; Botany; Genetics","score_opus":0.009272984604146765,"score_gpt":0.23076778051397617,"score_spread":0.2214947959098294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2866029465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946682,0.00082473416,0.0025331895,0.00009694958,0.000016567023,0.000008103319,0.00096557016,0.000050962997,0.00083567435],"genre_scores_gemma":[0.9903199,0.00047546183,0.0029913124,0.00008092403,0.0000115511375,0.000019244142,0.0032538448,0.000026092828,0.0028216452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999019,0.000005608467,0.0000084876365,0.00003567967,0.000031894626,0.000016404501],"domain_scores_gemma":[0.9998908,0.000013600981,0.000032270997,0.000014822046,0.000017262124,0.000031134852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000095022755,0.00031005073,0.00015773468,0.00030426035,0.0003213256,0.00031964638,0.00016385608,0.00025916987,0.0015090384],"category_scores_gemma":[0.00015450253,0.000107425956,0.00021872035,0.00021284026,0.00011924238,0.00024611174,0.00019742055,0.00031870397,0.0006133778],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044851706,0.000004561094,0.0007863301,0.00001691239,0.0000053862686,0.00007468689,0.0000071343875,0.000017939545,0.99860954,0.000026693262,0.000024202787,0.00038174083],"study_design_scores_gemma":[0.000011983286,0.00006578587,0.12582095,0.000012286755,0.000050360035,0.001957934,0.00008929897,0.0024730668,0.8648612,0.00011123723,0.0045334515,0.000012511931],"about_ca_topic_score_codex":0.0007761761,"about_ca_topic_score_gemma":0.0016285751,"teacher_disagreement_score":0.0015090384,"about_ca_system_score_codex":0.00031111288,"about_ca_system_score_gemma":0.00019398904,"threshold_uncertainty_score":0.0050482154},"labels":[],"label_agreement":null},{"id":"W2872545753","doi":"10.1074/mcp.tir118.000902","title":"A Versatile Lentiviral Delivery Toolkit for Proximity-dependent Biotinylation in Diverse Cell Types","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Amgen (Canada); Lunenfeld-Tanenbaum Research Institute","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Canada First Research Excellence Fund; Canada Foundation for Innovation; Ontario Genomics Institute; Government of Canada","keywords":"Biotinylation; Computational biology; Chemistry; Cell type; Cell; Computer science; Biology; Biochemistry","score_opus":0.008903363370496704,"score_gpt":0.22112315529743443,"score_spread":0.2122197919269377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2872545753","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.271877,0.00734753,0.67812747,0.00077834225,0.00044571247,0.002055741,0.0097019775,0.010815631,0.018850625],"genre_scores_gemma":[0.58246964,0.005594743,0.35979688,0.0004654371,0.00007124292,0.002481304,0.017880315,0.0018227918,0.029417641],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993364,0.00008300091,0.000090203066,0.00012000386,0.0002948492,0.00007553983],"domain_scores_gemma":[0.9997423,0.000036331956,0.00005784706,0.00006790266,0.00003950621,0.000056217585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007477842,0.00067871617,0.00047479363,0.0010485956,0.0006354089,0.000994774,0.0009535854,0.0006080461,0.0022094336],"category_scores_gemma":[0.00038828093,0.00056936115,0.00044265692,0.00046336246,0.00047362244,0.0005797695,0.0011740397,0.0016704632,0.0019430491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004646154,0.000031133186,0.0001481346,0.000092822076,0.000012490699,0.00008611238,0.00006031045,0.00011726639,0.98839986,0.0017037322,0.00080753077,0.0084941415],"study_design_scores_gemma":[0.000016706612,0.00008439369,0.00071707,0.000019256573,0.000029445322,0.00058545143,0.000020569874,0.0012790154,0.9617056,0.00024470154,0.03527515,0.000022678321],"about_ca_topic_score_codex":0.0011806116,"about_ca_topic_score_gemma":0.0020264573,"teacher_disagreement_score":0.0022094336,"about_ca_system_score_codex":0.0007347419,"about_ca_system_score_gemma":0.0006457874,"threshold_uncertainty_score":0.007391274},"labels":[],"label_agreement":null},{"id":"W2883020574","doi":"10.1074/mcp.tir118.000800","title":"Global Interactomics Uncovers Extensive Organellar Targeting by Zika Virus","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; Lunenfeld-Tanenbaum Research Institute; SickKids Foundation; University Health Network; University of Toronto; Public Health Agency of Canada; Hospital for Sick Children; Princess Margaret Cancer Centre","funders":"Canadian Institutes of Health Research","keywords":"Zika virus; Biology; Flavivirus; Virology; Microcephaly; Aedes; Genome; Dengue fever; Dengue virus; Virus; RNA; Flaviviridae; Computational biology; Genetics; Gene; Hepatitis C virus","score_opus":0.003829467212316548,"score_gpt":0.23350757423241703,"score_spread":0.22967810702010047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2883020574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882714,0.0023457264,0.0018837489,0.00015972956,0.000008203788,0.0000084714875,0.005706664,0.00012596678,0.0014899627],"genre_scores_gemma":[0.9835939,0.0016148344,0.0023983482,0.0000853499,0.000010716485,0.0000151211425,0.011464014,0.000032005657,0.0007856666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998648,0.000013087968,0.000007489879,0.000057733996,0.00002923206,0.000027619799],"domain_scores_gemma":[0.9998504,0.000032530916,0.000052788488,0.000016998903,0.00001907607,0.000028224993],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001584397,0.00031954795,0.00034025352,0.0012712908,0.0003069613,0.000560997,0.00012815927,0.00018426166,0.0011278866],"category_scores_gemma":[0.0002619257,0.00016832535,0.00041408927,0.0012510129,0.00017817563,0.00045021556,0.0005035186,0.00030320516,0.00026506622],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068298425,0.00007504102,0.214829,0.0005673565,0.0009334967,0.00067439856,0.00035740947,0.0023305158,0.74111414,0.0015815529,0.0032662535,0.03358782],"study_design_scores_gemma":[0.000010087703,0.00009923579,0.96119463,0.000025927078,0.00025912683,0.0006495266,0.0003169908,0.007857818,0.020800818,0.0014529647,0.0073109525,0.000021956463],"about_ca_topic_score_codex":0.0017488418,"about_ca_topic_score_gemma":0.0034206554,"teacher_disagreement_score":0.0017488418,"about_ca_system_score_codex":0.00026626835,"about_ca_system_score_gemma":0.00016701054,"threshold_uncertainty_score":0.0037732124},"labels":[],"label_agreement":null},{"id":"W2883227587","doi":"10.1074/mcp.ra118.000924","title":"Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek; European Commission","keywords":"Nucleosome; Interactome; Histone; Nucleoprotein; Chemistry; Biophysics; Ran; Protein–protein interaction; Computational biology; Mass spectrometry; Cell biology; Biology; Biochemistry; DNA","score_opus":0.006522903541385094,"score_gpt":0.2865909562050337,"score_spread":0.28006805266364865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2883227587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9786523,0.0010296706,0.017974311,0.00007255897,0.000008694369,0.000008291177,0.00037043137,0.00014264272,0.0017410335],"genre_scores_gemma":[0.98304623,0.0008826186,0.014346858,0.00008747663,0.000009329274,0.000019448918,0.00049973,0.000046823665,0.0010613531],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999548,0.000005795984,0.000001820548,0.00001695948,0.000012992824,0.000007672399],"domain_scores_gemma":[0.9999417,0.000022505712,0.000015137731,0.000005324308,0.0000070419746,0.000008250815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012678345,0.00014418285,0.000066778455,0.00028210858,0.00017629155,0.0002538188,0.00014613949,0.00018256425,0.00085954455],"category_scores_gemma":[0.00011017946,0.00010779865,0.00008764137,0.00017322307,0.00014871775,0.00021024884,0.00014987827,0.00023506678,0.00022161598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033678738,0.000005215635,0.00068938016,0.000017339453,0.000008453283,0.000058933536,0.00002865398,0.00039661495,0.9972185,0.00023457024,0.00003842856,0.0012702735],"study_design_scores_gemma":[0.000014064473,0.00008942102,0.02232494,0.000010694301,0.000030290304,0.00036880528,0.00011400772,0.01330416,0.960536,0.0006593389,0.0025351776,0.000013055894],"about_ca_topic_score_codex":0.0007420265,"about_ca_topic_score_gemma":0.0009994151,"teacher_disagreement_score":0.00085954455,"about_ca_system_score_codex":0.00025678918,"about_ca_system_score_gemma":0.00007380907,"threshold_uncertainty_score":0.0028755069},"labels":[],"label_agreement":null},{"id":"W2883984615","doi":"10.1074/mcp.tir118.000862","title":"A Novel Differential Ion Mobility Device Expands the Depth of Proteome Coverage and the Sensitivity of Multiplex Proteomic Measurements","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec; Institute for Research in Immunology and Cancer","funders":"Genome Canada","keywords":"Multiplex; Proteome; Sensitivity (control systems); Differential (mechanical device); Ion-mobility spectrometry; Chemistry; Ion; Analytical Chemistry (journal); Chromatography; Mass spectrometry; Biology; Bioinformatics; Biochemistry; Physics; Engineering; Electronic engineering","score_opus":0.019464130028172277,"score_gpt":0.24593849666289008,"score_spread":0.22647436663471782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2883984615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4929355,0.0053142123,0.48776302,0.0012032705,0.00071743055,0.00048263167,0.0021738247,0.0036289252,0.0057811565],"genre_scores_gemma":[0.4456761,0.002677805,0.542054,0.0010547038,0.0002571139,0.0007801063,0.0012794125,0.00018124016,0.0060395733],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936193,0.00004915661,0.000047228477,0.00027415343,0.00022454759,0.000043081323],"domain_scores_gemma":[0.9994779,0.0002109272,0.00008701984,0.00006441584,0.000104063816,0.00005576247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067467,0.00073717,0.0005923926,0.000654774,0.00028303586,0.0009049562,0.00090679125,0.0010304321,0.0013745035],"category_scores_gemma":[0.0009718729,0.00043619136,0.0003770611,0.00038362865,0.00047947292,0.0012769409,0.0009192812,0.00093410775,0.000640508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039513565,0.000015608503,0.00019790464,0.000054870874,0.000004027271,0.0000379076,0.000015264042,0.000070595626,0.9927073,0.0002677279,0.00012488429,0.006464389],"study_design_scores_gemma":[0.00002227241,0.00017916612,0.0022957695,0.000014042199,0.000023896153,0.00072721136,0.000025445452,0.0058775344,0.9795537,0.00030507194,0.010936623,0.000039268307],"about_ca_topic_score_codex":0.00018608962,"about_ca_topic_score_gemma":0.0002740904,"teacher_disagreement_score":0.0013745035,"about_ca_system_score_codex":0.0003712842,"about_ca_system_score_gemma":0.0003243601,"threshold_uncertainty_score":0.0045982003},"labels":[],"label_agreement":null},{"id":"W2884899054","doi":"10.1074/mcp.ra118.000644","title":"The Impact of Oncogenic EGFRvIII on the Proteome of Extracellular Vesicles Released from Glioblastoma Cells","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; University of Toronto; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; McGill University Health Centre","funders":"National Human Genome Research Institute; Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; Canada Excellence Research Chairs, Government of Canada","keywords":"Extracellular vesicles; Proteome; Glioblastoma; Cell biology; Chemistry; Extracellular; Microvesicles; Extracellular vesicle; Vesicle; Cancer research; Biology; Biochemistry; Gene; microRNA; Membrane","score_opus":0.006834300597357008,"score_gpt":0.23987189011783602,"score_spread":0.233037589520479,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884899054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972498,0.00072511093,0.00073648896,0.000029620274,0.000010468657,0.000008816746,0.0006250054,0.000014837515,0.0005997724],"genre_scores_gemma":[0.99536777,0.00084277237,0.000930453,0.000038740676,0.000005305258,0.000020575742,0.0017596732,0.000015775548,0.0010189686],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999256,0.000008023993,0.000006349415,0.000013335632,0.000027917476,0.000018798311],"domain_scores_gemma":[0.99997294,0.0000048673023,0.000007565021,0.0000023975772,0.000006443979,0.00000589505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006814918,0.0001742987,0.00017756304,0.0001765713,0.000106451305,0.000285328,0.000072132556,0.00012616826,0.00033440866],"category_scores_gemma":[0.00007861169,0.000057889756,0.0001993433,0.00018483354,0.00008455989,0.00014669583,0.00018496366,0.00017928096,0.00012019228],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008743776,0.0000073393257,0.00042976256,0.000021286378,0.0000064067203,0.00003907029,0.000017753491,0.00003350203,0.99843174,0.000032474785,0.000013911636,0.00087919773],"study_design_scores_gemma":[0.000006288915,0.00019112385,0.046661094,0.00000985216,0.00003763466,0.00036527694,0.000090100926,0.0010961047,0.9495614,0.00006125889,0.0019112624,0.000008555624],"about_ca_topic_score_codex":0.0008529676,"about_ca_topic_score_gemma":0.0005785195,"teacher_disagreement_score":0.0008529676,"about_ca_system_score_codex":0.00016816684,"about_ca_system_score_gemma":0.00012517245,"threshold_uncertainty_score":0.001695931},"labels":[],"label_agreement":null},{"id":"W2886540233","doi":"10.1074/mcp.tir118.000850","title":"gpGrouper: A Peptide Grouping Algorithm for Gene-Centric Inference and Quantitation of Bottom-Up Proteomics Data","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"National Cancer Institute; Alkek Center for Molecular Discovery, Baylor College of Medicine; Cancer Prevention and Research Institute of Texas; Diana Helis Henry Medical Research Foundation; Baylor College of Medicine; Robert and Janice McNair Foundation","keywords":"Proteomics; Inference; Computational biology; Computer science; Algorithm; Gene; Biology; Genetics; Artificial intelligence","score_opus":0.027948041270183806,"score_gpt":0.30002058642956697,"score_spread":0.2720725451593832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2886540233","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0029513834,0.00014501346,0.97676814,0.000069345966,0.000042071042,0.00007780154,0.00063083135,0.019020695,0.0002947185],"genre_scores_gemma":[0.021158883,0.00010218256,0.97357607,0.00014224739,0.0000380004,0.0002436256,0.0017294469,0.0024556357,0.0005538533],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.997221,0.00070617476,0.00016435089,0.0010434975,0.00073647546,0.00012853298],"domain_scores_gemma":[0.9959543,0.0022411402,0.00049293926,0.0007622174,0.0004201481,0.00012921401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007971639,0.0027126884,0.00174688,0.0038916385,0.0017522626,0.002916848,0.0033607539,0.0021412615,0.0044465093],"category_scores_gemma":[0.013963023,0.0015783138,0.0018092998,0.0032754634,0.0015666232,0.0030395673,0.00293151,0.0040010284,0.0034886787],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014697756,0.00042894846,0.008908194,0.0011032936,0.0011073635,0.0005033634,0.0010102333,0.07844109,0.11051761,0.022100251,0.03236259,0.74204737],"study_design_scores_gemma":[0.00020915824,0.00026074093,0.0024277167,0.00011233745,0.00016298506,0.00037299687,0.0001507377,0.80958414,0.077705465,0.07703705,0.031801645,0.00017502063],"about_ca_topic_score_codex":0.002045138,"about_ca_topic_score_gemma":0.0030643023,"teacher_disagreement_score":0.007971639,"about_ca_system_score_codex":0.0011738178,"about_ca_system_score_gemma":0.0022131505,"threshold_uncertainty_score":0.042158604},"labels":[],"label_agreement":null},{"id":"W2889493335","doi":"10.1074/mcp.ra118.000982","title":"N-terminal Acetylation Levels Are Maintained During Acetyl-CoA Deficiency in Saccharomyces cerevisiae","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"L. Meltzers Høyskolefond; Fonds Wetenschappelijk Onderzoek; Helse Vest; Norges Forskningsråd; Vlaamse regering; European Commission; Bergens Forskningsstiftelse; Kreftforeningen","keywords":"Acetylation; Saccharomyces cerevisiae; Terminal (telecommunication); Acetyl-CoA; Chemistry; Biochemistry; Yeast; Metabolism; Gene; Computer science","score_opus":0.009816302009379092,"score_gpt":0.2262894741195692,"score_spread":0.21647317211019013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889493335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983582,0.0004401191,0.000408949,0.000017576982,0.0000043513965,0.0000023804835,0.0005254827,0.000019182973,0.0002237471],"genre_scores_gemma":[0.9972499,0.00030402,0.0004983593,0.000014918292,0.0000020913808,0.000005371963,0.0010025693,0.000017165185,0.0009056634],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994755,0.00000420579,0.000008637048,0.000017019598,0.000014035527,0.000008592559],"domain_scores_gemma":[0.99990225,0.000008908146,0.00003108288,0.000011807658,0.00001782099,0.000028060162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006676871,0.000206063,0.00017354215,0.0001998964,0.00012197972,0.00030434012,0.00014493008,0.00010526733,0.00049679825],"category_scores_gemma":[0.000091565395,0.00017594024,0.00014598141,0.00022153802,0.00015702008,0.00013913128,0.00016447972,0.00022270283,0.00019808578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001409813,0.000006484898,0.0009808035,0.00001865222,0.000006099904,0.000030065643,0.000014004081,0.000044240984,0.99792224,0.000023646033,0.000013634871,0.0007992662],"study_design_scores_gemma":[0.000012086968,0.00017075027,0.095180675,0.000009168871,0.00004135409,0.00024820882,0.00011450706,0.0010940962,0.90163165,0.000098804485,0.0013857646,0.000012876908],"about_ca_topic_score_codex":0.0026585576,"about_ca_topic_score_gemma":0.0043468066,"teacher_disagreement_score":0.0026585576,"about_ca_system_score_codex":0.0002625638,"about_ca_system_score_gemma":0.00017279878,"threshold_uncertainty_score":0.005286157},"labels":[],"label_agreement":null},{"id":"W2890662474","doi":"10.1074/mcp.ra118.000822","title":"A Quantitative Chemical Proteomic Strategy for Profiling Phosphoprotein Phosphatases from Yeast to Humans","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health; V Foundation for Cancer Research","keywords":"Phosphatase; Phosphorylation; Kinase; Phosphoprotein; Serine; Biochemistry; Protein phosphorylation; Threonine; Protein phosphatase 2; Dephosphorylation; Chemistry; Biology; Cell biology; Protein kinase A","score_opus":0.022561503264941652,"score_gpt":0.2969672394433533,"score_spread":0.27440573617841163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2890662474","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5364545,0.011019211,0.43089122,0.0010822605,0.00035553717,0.0007198842,0.0075584664,0.003091799,0.008827051],"genre_scores_gemma":[0.63895196,0.0098315235,0.3370328,0.00087966083,0.00007279224,0.0007096953,0.0057610865,0.00032097186,0.006439558],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99973017,0.00003937371,0.000023247023,0.000069732385,0.00010926508,0.000028185315],"domain_scores_gemma":[0.9998497,0.000029750563,0.00002774134,0.000021927823,0.00005038738,0.000020490736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038120596,0.0006595266,0.00033905942,0.0007621156,0.0002618029,0.00044286056,0.00039294313,0.00033447912,0.0007491023],"category_scores_gemma":[0.0003565088,0.00024669387,0.00030150672,0.0004871204,0.0002584587,0.000224463,0.00036538026,0.0004843883,0.0004923996],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046840825,0.000012359752,0.00027486385,0.00006288916,0.000012393012,0.000041027673,0.000013722277,0.00012475159,0.99405,0.00027310508,0.00014514479,0.004942876],"study_design_scores_gemma":[0.000014229525,0.00017600745,0.0044306586,0.000016167864,0.000046010806,0.00051159895,0.000048724996,0.0038238182,0.97644675,0.00033959182,0.014129224,0.000017255106],"about_ca_topic_score_codex":0.0009160915,"about_ca_topic_score_gemma":0.0018494133,"teacher_disagreement_score":0.0009160915,"about_ca_system_score_codex":0.00035123847,"about_ca_system_score_gemma":0.0004585677,"threshold_uncertainty_score":0.0025483966},"labels":[],"label_agreement":null},{"id":"W2891974017","doi":"10.1074/mcp.ra118.000593","title":"The Protein Coded by a Short Open Reading Frame, Not by the Annotated Coding Sequence, Is the Main Gene Product of the Dual-Coding Gene MIEF1","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"PROTEO; Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Proteogenomics; Open reading frame; Gene; ORFS; Biology; Coding region; Ribosome profiling; Computational biology; Genetics; Peptide sequence; Translation (biology); Gene expression; Transcriptome; Messenger RNA","score_opus":0.016821339748305453,"score_gpt":0.2480752689832391,"score_spread":0.23125392923493363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2891974017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8795289,0.003043956,0.100915216,0.0010178202,0.0005768896,0.0000534396,0.0047189193,0.0010801847,0.009064593],"genre_scores_gemma":[0.9188991,0.0007417214,0.06712045,0.00028274133,0.00007850874,0.00004571337,0.005593161,0.000156586,0.007081904],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980265,0.000029465344,0.000018486831,0.00008601837,0.000044255165,0.000019152229],"domain_scores_gemma":[0.9991565,0.00035582008,0.00014691758,0.000124167,0.000121791054,0.00009480738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032017098,0.00049791945,0.0003274132,0.00058047305,0.00042858493,0.0005842146,0.00029703326,0.00048807365,0.002489075],"category_scores_gemma":[0.00076892175,0.00013638871,0.0004026155,0.0003724633,0.0006660834,0.00064233557,0.00029001068,0.00073546945,0.0015618041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028026884,0.000020620144,0.0021268146,0.00018258744,0.000010876161,0.00035394923,0.00007733259,0.00018858595,0.9801354,0.002991983,0.0002666767,0.013364971],"study_design_scores_gemma":[0.00002221905,0.00038146155,0.038392585,0.000067879184,0.00006145991,0.0041204314,0.00031652622,0.0046717464,0.90073043,0.008127004,0.0430577,0.000050595725],"about_ca_topic_score_codex":0.0005722206,"about_ca_topic_score_gemma":0.00064491126,"teacher_disagreement_score":0.002489075,"about_ca_system_score_codex":0.0005057807,"about_ca_system_score_gemma":0.0004039486,"threshold_uncertainty_score":0.008326709},"labels":[],"label_agreement":null},{"id":"W2900768108","doi":"10.1074/mcp.ra118.001170","title":"Identification of TEX101-associated Proteins Through Proteomic Measurement of Human Spermatozoa Homozygous for the Missense Variant rs35033974*","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biology; Sperm; Proteomics; Male infertility; Germ cell; Missense mutation; Population; Proteome; Gene knockdown; Genetics; Oocyte; Infertility; Human genetics; Andrology; Molecular biology; Gene; Phenotype; Embryo; Medicine; Pregnancy","score_opus":0.01823384260611101,"score_gpt":0.26142053283998257,"score_spread":0.24318669023387157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900768108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99666226,0.00049295207,0.0012934182,0.00009052237,0.000035976285,0.0000071111035,0.0008216263,0.000031982596,0.0005640608],"genre_scores_gemma":[0.996666,0.00016093878,0.0010989218,0.000072662726,0.000008912332,0.000008479848,0.00075590075,0.000011999032,0.001216168],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998797,0.000017766239,0.000015246319,0.000046832447,0.000026349735,0.000014086308],"domain_scores_gemma":[0.99992144,0.000017831158,0.000028875531,0.000008148034,0.000008303322,0.000015387317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020523553,0.0002217335,0.00016412942,0.00033451704,0.00015922799,0.00032913606,0.00015520376,0.0004889281,0.0032233743],"category_scores_gemma":[0.0003860621,0.00009418845,0.000182636,0.00025034256,0.00021882672,0.00012723543,0.00017288877,0.00020015216,0.00035881804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045275374,0.000022352004,0.021650318,0.000052301948,0.000090625996,0.0005445349,0.00006398264,0.000057577538,0.97326875,0.0001366135,0.00016582322,0.00349445],"study_design_scores_gemma":[0.00005028541,0.00058051926,0.59760475,0.000021353717,0.00019715,0.008653231,0.0003134953,0.0016688837,0.38668045,0.00034611698,0.0038587642,0.000024932831],"about_ca_topic_score_codex":0.00078993937,"about_ca_topic_score_gemma":0.0009906315,"teacher_disagreement_score":0.0032233743,"about_ca_system_score_codex":0.00008215206,"about_ca_system_score_gemma":0.00009023555,"threshold_uncertainty_score":0.0107831955},"labels":[],"label_agreement":null},{"id":"W2901994125","doi":"10.1074/mcp.ra118.000757","title":"A High-throughput Bead-based Affinity Assay Enables Analysis of Genital Protein Signatures in Women At Risk of HIV Infection","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Fogarty International Center; Canadian Institutes of Health Research; Center for AIDS Research, University of Washington; Science for Life Laboratory; VINNOVA; Knut och Alice Wallenbergs Stiftelse; National Institutes of Health; Government of Canada; Vetenskapsrådet; National Institute of Allergy and Infectious Diseases; Familjen Erling-Perssons Stiftelse","keywords":"Human immunodeficiency virus (HIV); Bead; Throughput; Computational biology; Magnetic bead; Chromatography; Chemistry; Virology; Biology; Computer science; Materials science","score_opus":0.004224613358675245,"score_gpt":0.21965802037362742,"score_spread":0.21543340701495217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901994125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99396956,0.0006981003,0.0035989352,0.000058994443,0.000012884802,0.000042973847,0.0010035328,0.000060723287,0.00055423536],"genre_scores_gemma":[0.99347657,0.00024818451,0.0041392813,0.000075914446,0.000012150308,0.00005907838,0.0008626033,0.000005599937,0.0011206035],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974495,0.000057396057,0.000014976497,0.00006869553,0.0000705252,0.000043439504],"domain_scores_gemma":[0.9998455,0.00004880172,0.00003464156,0.000025622792,0.000021577873,0.000023766486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026142277,0.00021535558,0.00018557046,0.0005888217,0.00029183907,0.00045503254,0.00024043188,0.0004347509,0.0012281107],"category_scores_gemma":[0.000542119,0.0002390843,0.0001636559,0.0005010862,0.00014755568,0.00010832046,0.00024197501,0.00031103098,0.00045118397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016169809,0.00042168854,0.42983058,0.00014263477,0.00020467295,0.00030843672,0.00029125868,0.00043076908,0.5221962,0.00017650577,0.0011543743,0.043225992],"study_design_scores_gemma":[0.000041302537,0.0008521823,0.9099139,0.000017241318,0.00012293766,0.0018043675,0.00016775679,0.0022727004,0.082117334,0.00020360458,0.0024672272,0.000019405465],"about_ca_topic_score_codex":0.0012130718,"about_ca_topic_score_gemma":0.002164185,"teacher_disagreement_score":0.0012281107,"about_ca_system_score_codex":0.00016777859,"about_ca_system_score_gemma":0.00014563867,"threshold_uncertainty_score":0.0041084886},"labels":[],"label_agreement":null},{"id":"W2902542754","doi":"10.1074/mcp.ra118.001053","title":"Dynamic Phosphoproteomics Uncovers Signaling Pathways Modulated by Anti-oncogenic Sphingolipid Analogs","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Sphingolipid Metabolism and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Research in Immunology and Cancer; Université de Montréal","funders":"National Institute of General Medical Sciences; Congressionally Directed Medical Research Programs; Natural Sciences and Engineering Research Council of Canada; National Cancer Institute; National Institutes of Health; Government of Canada; Genome Canada; American Cancer Society","keywords":"Phosphoproteomics; Sphingolipid; Signal transduction; Cell biology; Chemistry; Computational biology; Biology; Phosphorylation; Protein kinase A; Protein phosphorylation","score_opus":0.0048623467519554285,"score_gpt":0.2061940725285986,"score_spread":0.20133172577664316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902542754","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939545,0.0009870618,0.0020321491,0.00009767655,0.000014526577,0.000020292171,0.0014351178,0.000045897847,0.0014128415],"genre_scores_gemma":[0.99434507,0.0009911453,0.0018716241,0.00006831152,0.0000058404225,0.000028148852,0.0012033151,0.000015029251,0.0014716558],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994695,0.0000045382953,0.0000027494823,0.0000132778205,0.000018243654,0.000014234591],"domain_scores_gemma":[0.9999765,0.0000035470532,0.00000806531,0.000002380675,0.000003517403,0.000005841736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000085827545,0.00023387231,0.00016253807,0.00019974055,0.00011800525,0.00029334292,0.00014265245,0.0001702478,0.0011588169],"category_scores_gemma":[0.00006118276,0.00010832697,0.00015411615,0.00021862403,0.00015038131,0.0002090371,0.0001401463,0.0004015597,0.00020776004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008370272,0.000007835516,0.00013461229,0.000012521203,0.0000036762835,0.000017915454,0.000003313899,0.00004400781,0.99898285,0.00005684605,0.000021979546,0.00063064386],"study_design_scores_gemma":[0.000008789337,0.000081795224,0.00720039,0.0000020817063,0.000010653198,0.00012472471,0.000017762197,0.000774024,0.9908359,0.00007458614,0.000866567,0.0000027136277],"about_ca_topic_score_codex":0.0005835562,"about_ca_topic_score_gemma":0.0009732327,"teacher_disagreement_score":0.0011588169,"about_ca_system_score_codex":0.00027864688,"about_ca_system_score_gemma":0.00014554872,"threshold_uncertainty_score":0.003876567},"labels":[],"label_agreement":null},{"id":"W2902742859","doi":"10.1074/mcp.ra118.001123","title":"Surface Loops in a Single SH2 Domain Are Capable of Encoding the Spectrum of Specificity of the SH2 Family*","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Occupational Cancer Research Centre; Western University","funders":"National Institute on Deafness and Other Communication Disorders; Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada","keywords":"SH2 domain; ENCODE; Biology; Computational biology; Proto-oncogene tyrosine-protein kinase Src; Phosphorylation; Biochemistry; Gene","score_opus":0.02541314560368077,"score_gpt":0.2558954745442426,"score_spread":0.23048232894056184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902742859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944851,0.00028144827,0.0043255943,0.000027906755,0.000011252531,0.0000161882,0.00009037823,0.000043276694,0.0007188809],"genre_scores_gemma":[0.99593806,0.00007490739,0.0028153122,0.00003231758,0.000006829237,0.000012712989,0.00030455564,0.0000146366365,0.00080071663],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998759,0.000024588073,0.0000076242754,0.000024597246,0.000032784523,0.000034442128],"domain_scores_gemma":[0.99984884,0.000040808918,0.00004304509,0.000023942648,0.000013314721,0.000030063014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001383365,0.000409464,0.00023086459,0.00018273824,0.00012965308,0.00023269969,0.00022692671,0.00025214537,0.0010989289],"category_scores_gemma":[0.00015840058,0.00010101322,0.0002722239,0.00020688493,0.0002088359,0.00019569522,0.00030882086,0.00040196354,0.0004424253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005009117,0.000020523683,0.00043803715,0.000011640977,0.000005636912,0.00008425814,0.000006256916,0.00008474869,0.9981287,0.000098042416,0.000014703048,0.001057341],"study_design_scores_gemma":[0.0000215355,0.00053533603,0.012831908,0.0000066810385,0.00003310347,0.0012251984,0.000038309547,0.0015285454,0.979856,0.00020501546,0.0037120318,0.0000063247385],"about_ca_topic_score_codex":0.00017645517,"about_ca_topic_score_gemma":0.00027629273,"teacher_disagreement_score":0.0010989289,"about_ca_system_score_codex":0.0002003939,"about_ca_system_score_gemma":0.00009545605,"threshold_uncertainty_score":0.0036762953},"labels":[],"label_agreement":null},{"id":"W2906978943","doi":"10.1074/mcp.e118.001286","title":"Initial Guidelines for Manuscripts Employing Data-independent Acquisition Mass Spectrometry for Proteomic Analysis","year":2019,"lang":"en","type":"editorial","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"University of California, San Francisco; University of Toronto; University of California, San Diego; Buck Institute for Research on Aging; Broad Institute; University of Washington","keywords":"Mass spectrometry; Analyte; Proteomics; Tandem mass spectrometry; Chemistry; Quantitative proteomics; Shotgun proteomics; Fragmentation (computing); Peptide; Chromatography; Computational biology; Computer science; Analytical Chemistry (journal); Biology; Biochemistry","score_opus":0.04759815171186528,"score_gpt":0.3547768383683613,"score_spread":0.30717868665649606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2906978943","genre_codex":"other","genre_gemma":"editorial","domain_codex":null,"domain_gemma":"reporting","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":"reporting","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034228538,0.029252201,0.22166346,0.14033645,0.19233203,0.07182131,0.037207153,0.04499113,0.2589734],"genre_scores_gemma":[0.009235294,0.02836566,0.39317617,0.10239689,0.050625835,0.06930899,0.02870498,0.01793749,0.30024865],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9240807,0.02456638,0.026122473,0.0029775812,0.019183166,0.003069625],"domain_scores_gemma":[0.65609556,0.09277721,0.027492717,0.032520875,0.17882036,0.012293349],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.076483116,0.0028102668,0.0045473464,0.01700141,0.00605155,0.019259103,0.0069027008,0.012970369,0.18213606],"category_scores_gemma":[0.2696092,0.0038001828,0.004592963,0.015420787,0.004430805,0.0129576335,0.009216417,0.009429892,0.29803234],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003651474,0.00015718669,0.00024281112,0.0075451084,0.00004414377,0.0004080415,0.00042808263,0.00017066945,0.003250624,0.005391757,0.9008354,0.081161104],"study_design_scores_gemma":[0.00009015704,0.00012072343,0.00059561385,0.00242515,0.000018318033,0.00027462523,0.0001599748,0.00012704132,0.0006805657,0.003273428,0.99218833,0.000046008594],"about_ca_topic_score_codex":0.0012142701,"about_ca_topic_score_gemma":0.0030447792,"teacher_disagreement_score":0.92351687,"about_ca_system_score_codex":0.0051727686,"about_ca_system_score_gemma":0.014771744,"threshold_uncertainty_score":0.60930586},"labels":[],"label_agreement":null},{"id":"W2911188069","doi":"10.1074/mcp.tir118.000918","title":"Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Youth Innovation Promotion Association; Youth Innovation Promotion Association of the Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Trypsin; Proteome; Protease; Proteomics; Proteases; Computational biology; Bottom-up proteomics; Peptide; Tandem mass spectrometry; Chemistry; Peptide sequence; Biology; Biochemistry; Mass spectrometry; Chromatography; Enzyme; Protein mass spectrometry","score_opus":0.013744190952269903,"score_gpt":0.2684076914882703,"score_spread":0.2546635005360004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911188069","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.18074879,0.0006632289,0.8146129,0.00008202506,0.000071511946,0.00016832935,0.00055009255,0.002215421,0.0008876957],"genre_scores_gemma":[0.21030493,0.00035466152,0.7866819,0.00006464899,0.000024198791,0.00019979052,0.0012029397,0.000359994,0.0008069272],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931574,0.000105053674,0.00007285903,0.00022530278,0.00023604954,0.000045007215],"domain_scores_gemma":[0.99923086,0.00026494672,0.00013596549,0.00012306521,0.00019873552,0.000046540034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017678107,0.0007252946,0.00060616847,0.0004367093,0.00040649733,0.0011030481,0.00075274106,0.00060328114,0.00074296194],"category_scores_gemma":[0.0022337534,0.00039067725,0.0005160317,0.00058571267,0.00028457952,0.00082442595,0.00076774583,0.00085714937,0.0004535176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034424537,0.000036284684,0.001039028,0.00015645957,0.00007138854,0.0001353407,0.000087420536,0.0026535003,0.9444477,0.0016338102,0.00042419982,0.048970588],"study_design_scores_gemma":[0.00006529172,0.00020000465,0.0022191957,0.000012493272,0.000046058707,0.0005276964,0.000027952248,0.07834913,0.9110134,0.0012844014,0.006210634,0.000043736494],"about_ca_topic_score_codex":0.0006394806,"about_ca_topic_score_gemma":0.0009076224,"teacher_disagreement_score":0.0017678107,"about_ca_system_score_codex":0.00042607324,"about_ca_system_score_gemma":0.000891452,"threshold_uncertainty_score":0.009349227},"labels":[],"label_agreement":null},{"id":"W2914019332","doi":"10.1074/mcp.tir118.001099","title":"Quantitative Multiplex Substrate Profiling of Peptidases by Mass Spectrometry","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; Office of the President, University of California; Ray Thomas Edwards Foundation; University of California, San Diego; National Institutes of Health; American Cancer Society","keywords":"Proteolysis; Chemistry; Peptide; Proteases; Tandem mass spectrometry; Biochemistry; Cleavage (geology); Isobaric labeling; Mass spectrometry; Chromatography; Protein mass spectrometry; Enzyme; Biology","score_opus":0.010450737994871359,"score_gpt":0.248440548239098,"score_spread":0.23798981024422663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914019332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.54450405,0.006046263,0.4384108,0.00046143608,0.00022544601,0.0005560098,0.0036090116,0.0021502026,0.004036849],"genre_scores_gemma":[0.6111838,0.0050985874,0.37324816,0.00065346365,0.00014282754,0.00081188173,0.00302467,0.00020369602,0.0056329537],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983576,0.0002808081,0.00009168653,0.00041468348,0.0007411436,0.00011415198],"domain_scores_gemma":[0.9989506,0.00035063064,0.00024572597,0.00010692917,0.000243664,0.00010250173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016562382,0.0011412166,0.0005932305,0.0012369108,0.00028989871,0.0009488577,0.0006167073,0.00081808446,0.0008084983],"category_scores_gemma":[0.0016531299,0.00033380886,0.000431891,0.00095730124,0.0004832047,0.0007633516,0.0006152364,0.0010593019,0.0006434032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109241,0.00003921523,0.00067821454,0.000065387736,0.000029224915,0.00004206775,0.000024231773,0.0002484035,0.99106604,0.00020713819,0.00016609058,0.007324836],"study_design_scores_gemma":[0.000012189349,0.00020170464,0.0021314467,0.000009952147,0.000025197947,0.00028809652,0.000024313975,0.0072262045,0.98772687,0.00025752082,0.002076756,0.000019738696],"about_ca_topic_score_codex":0.00025358758,"about_ca_topic_score_gemma":0.00053963804,"teacher_disagreement_score":0.0016562382,"about_ca_system_score_codex":0.00047800897,"about_ca_system_score_gemma":0.00029915938,"threshold_uncertainty_score":0.008759081},"labels":[],"label_agreement":null},{"id":"W2914554017","doi":"10.1074/mcp.ra118.001135","title":"Investigating Lactococcus lactis MG1363 Response to Phage p2 Infection at the Proteome Level","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Novalait; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Lactococcus lactis; Proteome; Biology; Microbiology; Bacteriophage; Lactococcus; Bacteria; Bioinformatics; Genetics; Lactic acid; Escherichia coli; Gene","score_opus":0.01216355074494178,"score_gpt":0.2309665296224371,"score_spread":0.21880297887749534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914554017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994585,0.00048674093,0.0024732891,0.00008972121,0.000020646567,0.000020502075,0.0013045386,0.00010839208,0.0009112486],"genre_scores_gemma":[0.9865066,0.000390518,0.004158666,0.00011157738,0.000009171766,0.00003902317,0.0037361165,0.00007065738,0.004977675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987435,0.000010697441,0.000009580021,0.00003367636,0.000042080916,0.000029641244],"domain_scores_gemma":[0.999928,0.000018851442,0.000017630126,0.000009817088,0.000011293959,0.000014393625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010316634,0.0006233176,0.0003836555,0.00024655234,0.00016610482,0.00036359963,0.00021075802,0.0002976802,0.0008226301],"category_scores_gemma":[0.00011125571,0.00013621793,0.00031630267,0.00034514148,0.00019651477,0.00018197735,0.00035298587,0.000477079,0.0003506844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002770627,0.000009110039,0.00018338863,0.000012193148,0.000002248847,0.000026912034,0.000009117662,0.000012461651,0.9994393,0.000008279966,0.000006178362,0.00026292566],"study_design_scores_gemma":[0.0000045961515,0.00021971922,0.014776808,0.0000035264254,0.000015563535,0.00027562198,0.00006468438,0.00055787247,0.9828394,0.000041637188,0.0011919952,0.000008576299],"about_ca_topic_score_codex":0.0031451508,"about_ca_topic_score_gemma":0.0025204807,"teacher_disagreement_score":0.0031451508,"about_ca_system_score_codex":0.00030442604,"about_ca_system_score_gemma":0.00019455122,"threshold_uncertainty_score":0.0062537193},"labels":[],"label_agreement":null},{"id":"W2935671412","doi":"10.1074/mcp.ra119.001401","title":"Hypoxia-induced Changes in SUMO Conjugation Affect Transcriptional Regulation Under Low Oxygen","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"University of Thessaly; Deutsche Forschungsgemeinschaft; Alexander von Humboldt-Stiftung","keywords":"SUMO protein; Biology; Transcription factor; Cell biology; Hypoxia-inducible factors; Stable isotope labeling by amino acids in cell culture; Carcinogenesis; Proteome; Proteomics; Biochemistry; Ubiquitin; Gene","score_opus":0.01151362859138433,"score_gpt":0.21949749335801558,"score_spread":0.20798386476663125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2935671412","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99554527,0.0014010117,0.001623951,0.00008785822,0.000024215704,0.00000665438,0.00039510548,0.00002432964,0.0008915017],"genre_scores_gemma":[0.99670666,0.0009038438,0.00067492743,0.00006317502,0.000009652007,0.000009129103,0.00044215404,0.000008887894,0.0011815886],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999938,0.000008819973,0.000004191615,0.000018412404,0.0000119575625,0.000018618342],"domain_scores_gemma":[0.999949,0.0000072772623,0.000016946304,0.0000053717945,0.000007507781,0.000013942241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009836684,0.00016239678,0.0001442109,0.00010812676,0.00012436202,0.00021188939,0.000085752195,0.00014575607,0.0010794742],"category_scores_gemma":[0.00010194819,0.00007855796,0.00017894468,0.00011356224,0.00015794644,0.00020383314,0.00013855551,0.00021150468,0.00024270608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095243304,0.000008736753,0.00047743815,0.000014530258,0.0000048691904,0.000028868637,0.000013172367,0.000020080175,0.9986946,0.000040001167,0.000017229853,0.0005852275],"study_design_scores_gemma":[0.000008528596,0.00011354318,0.05260907,0.000004464049,0.000017313689,0.00020747012,0.000058329693,0.0005703696,0.9446453,0.00011411766,0.0016460015,0.000005498085],"about_ca_topic_score_codex":0.00031544713,"about_ca_topic_score_gemma":0.00034441624,"teacher_disagreement_score":0.0010794742,"about_ca_system_score_codex":0.00013824448,"about_ca_system_score_gemma":0.00008909554,"threshold_uncertainty_score":0.003611207},"labels":[],"label_agreement":null},{"id":"W2949203676","doi":"10.1074/mcp.ra118.001093","title":"Salmonella Effectors SseK1 and SseK3 Target Death Domain Proteins in the TNF and TRAIL Signaling Pathways*","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; University of Saskatchewan","funders":"National Research Council Canada; Western Economic Diversification Canada; Canadian Institutes of Health Research; National Health and Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Government of Canada; University of Saskatchewan; Canadian Light Source","keywords":"Effector; Salmonella; Signal transduction; Cell biology; Signaling proteins; Tumor necrosis factor alpha; Death domain; Computational biology; Biology; Chemistry; Programmed cell death; Biochemistry; Genetics; Apoptosis; Bacteria; Immunology","score_opus":0.011951990400650038,"score_gpt":0.19214338861285257,"score_spread":0.18019139821220254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949203676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993733,0.00080134976,0.0041925022,0.00009754783,0.000027153052,0.000027912949,0.00025772664,0.000074974196,0.00078778126],"genre_scores_gemma":[0.9925391,0.00031264685,0.0041864133,0.00006786651,0.0000052802066,0.000023600036,0.00068271876,0.000018404036,0.0021639518],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998332,0.000023330578,0.000022071092,0.00002400968,0.00005261384,0.00004474392],"domain_scores_gemma":[0.9998516,0.000014010429,0.00006096298,0.000019232273,0.000018474659,0.000035760342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018293472,0.0004948824,0.00022521634,0.00013667917,0.00011038064,0.0003948633,0.00014599727,0.0003827098,0.00077547046],"category_scores_gemma":[0.00010679028,0.000106187705,0.0003661961,0.00010763914,0.00023997636,0.00017456531,0.00033798313,0.0005438998,0.00053087954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008880501,0.000015655907,0.0004955341,0.00001641085,0.0000032975215,0.000034165725,0.0000051498423,0.00004062569,0.99850756,0.00007716801,0.000017241022,0.00069833006],"study_design_scores_gemma":[0.000010324446,0.00023180468,0.0065780254,0.000004228804,0.000011489777,0.0005526631,0.000036654692,0.00064647134,0.99009037,0.000041523443,0.001791686,0.0000048166407],"about_ca_topic_score_codex":0.00022484451,"about_ca_topic_score_gemma":0.00032629544,"teacher_disagreement_score":0.00077547046,"about_ca_system_score_codex":0.0003851389,"about_ca_system_score_gemma":0.0001791856,"threshold_uncertainty_score":0.002794385},"labels":[],"label_agreement":null},{"id":"W2950121063","doi":"10.1074/mcp.ra117.000538","title":"Protein Tyrosine Phosphatase Receptor Type G (PTPRG) Controls Fibroblast Growth Factor Receptor (FGFR) 1 Activity and Influences Sensitivity to FGFR Kinase Inhibitors","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Fibroblast Growth Factor Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Norges Forskningsråd; Kreftforeningen","keywords":"Fibroblast growth factor receptor 1; Fibroblast growth factor receptor; Fibroblast growth factor; Phosphatase; Cancer research; Biology; Receptor tyrosine kinase; Fibroblast growth factor receptor 4; Protein tyrosine phosphatase; Phosphorylation; Chemistry; Biochemistry; Receptor","score_opus":0.009167835864831678,"score_gpt":0.24328762562779352,"score_spread":0.23411978976296183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950121063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99417937,0.002549232,0.0017075313,0.00010026084,0.0000134133315,0.000011032358,0.00021457646,0.00006402127,0.0011606003],"genre_scores_gemma":[0.99778855,0.00088739675,0.0005915203,0.000020077805,0.000004379655,0.0000047307244,0.00010904954,0.000010338648,0.0005838521],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99975616,0.00004978344,0.000014390658,0.000048834834,0.00006974564,0.00006112341],"domain_scores_gemma":[0.9999069,0.00002586685,0.000034117584,0.00000834039,0.000008759296,0.000016143757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018852673,0.00023462075,0.00028324669,0.000296935,0.00013787585,0.00037754144,0.0001265682,0.00026616862,0.0008296872],"category_scores_gemma":[0.00028480456,0.00016947102,0.00016069315,0.00021956199,0.00023277137,0.00020050304,0.00019122478,0.0002349964,0.00035209654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006937722,0.000005756257,0.00058120285,0.000009457413,0.0000026570697,0.00003711293,0.0000067979668,0.00005931614,0.9981294,0.000036856298,0.000023980678,0.0010381258],"study_design_scores_gemma":[0.000022574091,0.00022984238,0.04400403,0.0000041589437,0.000023478266,0.00052854576,0.000043937198,0.0023126407,0.9510033,0.00011963055,0.0016982453,0.0000096236145],"about_ca_topic_score_codex":0.0008943169,"about_ca_topic_score_gemma":0.0012531733,"teacher_disagreement_score":0.0008943169,"about_ca_system_score_codex":0.0003746263,"about_ca_system_score_gemma":0.00015739004,"threshold_uncertainty_score":0.0027756095},"labels":[],"label_agreement":null},{"id":"W2952345177","doi":"10.1074/mcp.ra117.000104","title":"A Varroa destructor protein atlas reveals molecular underpinnings of developmental transitions and sexual differentiation","year":2017,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Varroa destructor; Sexual differentiation; Destructor; Biology; Evolutionary biology; Zoology; Computational biology; Genetics; Ecology; Honey bee; Gene","score_opus":0.02020659037398506,"score_gpt":0.23107812052674775,"score_spread":0.2108715301527627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2952345177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.73317254,0.018795656,0.060068496,0.002173517,0.00045115995,0.00015367915,0.1595053,0.0084236385,0.017256053],"genre_scores_gemma":[0.5968528,0.022522364,0.12835903,0.0008786559,0.00022270523,0.00031726263,0.22392766,0.0015595363,0.025360081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998641,0.000009194165,0.000009813624,0.000054789587,0.00004026215,0.00002180319],"domain_scores_gemma":[0.9997938,0.000026075455,0.000059571015,0.00003535948,0.00003546434,0.000049692488],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027879703,0.0005358921,0.00041710917,0.001846655,0.0006302897,0.0009016022,0.00038642334,0.00039430545,0.0024432892],"category_scores_gemma":[0.00024063,0.0002670672,0.00059571385,0.0015932999,0.00020007088,0.00083119,0.0006618961,0.0008335766,0.0014812154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045078574,0.000049688468,0.00903965,0.0006771201,0.00014692779,0.00033089495,0.00018081686,0.00049650663,0.94801605,0.0018625921,0.010221235,0.028527744],"study_design_scores_gemma":[0.00008009118,0.00020905721,0.47005484,0.00013009236,0.00046720298,0.0032602884,0.00040363023,0.014768617,0.2828613,0.006744319,0.22091687,0.000103820894],"about_ca_topic_score_codex":0.001538339,"about_ca_topic_score_gemma":0.0052966042,"teacher_disagreement_score":0.0024432892,"about_ca_system_score_codex":0.00056024495,"about_ca_system_score_gemma":0.00053382077,"threshold_uncertainty_score":0.008173585},"labels":[],"label_agreement":null},{"id":"W2952831894","doi":"10.1074/mcp.ra118.000749","title":"Discovery of a Human Testis-specific Protein Complex TEX101-DPEP3 and Selection of Its Disrupting Antibodies","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research","keywords":"Interactome; Biology; Immunoprecipitation; Germ cell; Cell biology; Antibody; Epitope; Proteome; Chaperone (clinical); Oocyte; Molecular biology; Genetics; Gene; Embryo; Medicine","score_opus":0.023717616876226512,"score_gpt":0.27713586812080765,"score_spread":0.2534182512445811,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2952831894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9497904,0.0016233383,0.04118716,0.0007783731,0.00012756299,0.00018516868,0.0020539411,0.00021081383,0.004043208],"genre_scores_gemma":[0.94407713,0.0011720941,0.038562004,0.0005060608,0.000023670967,0.00011098217,0.0065398137,0.0001341873,0.008874011],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985135,0.000018705838,0.000015157756,0.00004456336,0.00004108436,0.000029072697],"domain_scores_gemma":[0.9998615,0.000036050966,0.000027444472,0.000016407343,0.000020268983,0.00003839897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002358847,0.00040725427,0.00021033123,0.0002326245,0.00018862328,0.00039239082,0.00036552973,0.00038790653,0.002404821],"category_scores_gemma":[0.0002596009,0.0002205828,0.0002910846,0.00021389652,0.00021931341,0.00021791311,0.00018719424,0.000875864,0.000830517],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024075105,0.000010740029,0.00014450877,0.000011108264,0.0000045217494,0.000040626215,0.000004435619,0.000024766146,0.9989863,0.000104566316,0.00005998523,0.00058436324],"study_design_scores_gemma":[0.00000995309,0.00005783241,0.0021533794,0.0000030252004,0.000010948857,0.00044274906,0.000011821435,0.0006967065,0.99187756,0.00004279266,0.004690148,0.0000030546669],"about_ca_topic_score_codex":0.0011207904,"about_ca_topic_score_gemma":0.0021200497,"teacher_disagreement_score":0.002404821,"about_ca_system_score_codex":0.0005909143,"about_ca_system_score_gemma":0.0002720633,"threshold_uncertainty_score":0.0080448985},"labels":[],"label_agreement":null},{"id":"W2952844973","doi":"10.1074/mcp.tir118.001132","title":"DIAlignR Provides Precise Retention Time Alignment Across Distant Runs in DIA and Targeted Proteomics","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Robustness (evolution); Computer science; Pairwise comparison; Elution; Pattern recognition (psychology); Artificial intelligence; Chemistry; Chromatography","score_opus":0.005033187585067315,"score_gpt":0.22455382299523544,"score_spread":0.2195206354101681,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2952844973","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03183447,0.00068774127,0.92384034,0.00016811011,0.00014602233,0.00012177282,0.001361803,0.039924115,0.0019156822],"genre_scores_gemma":[0.08895493,0.00038202814,0.8897912,0.00029657577,0.000059695714,0.00044714694,0.004757395,0.01189212,0.0034189487],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975375,0.0003434682,0.00018216512,0.0012201515,0.00053266383,0.00018405562],"domain_scores_gemma":[0.99854845,0.00055921194,0.00023448201,0.00029615732,0.00026076534,0.00010085148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035184047,0.001843305,0.0012030051,0.0014353483,0.0011357691,0.0024051815,0.0019396631,0.001470303,0.004621643],"category_scores_gemma":[0.005609161,0.0012485998,0.0013680317,0.0015077097,0.000811905,0.001973946,0.002889346,0.0026756006,0.0064597977],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00208049,0.0004313524,0.0077393227,0.00088573963,0.00052795996,0.00054840645,0.0009305535,0.049787927,0.34897688,0.010378461,0.025313195,0.55239975],"study_design_scores_gemma":[0.00019441864,0.0004733783,0.0068489127,0.00009728059,0.00015362746,0.0009235404,0.00019517809,0.598623,0.31457135,0.017564647,0.059942625,0.00041199502],"about_ca_topic_score_codex":0.001887536,"about_ca_topic_score_gemma":0.0027659105,"teacher_disagreement_score":0.004621643,"about_ca_system_score_codex":0.0007375913,"about_ca_system_score_gemma":0.0016850606,"threshold_uncertainty_score":0.018607318},"labels":[],"label_agreement":null},{"id":"W2953493704","doi":"10.1074/mcp.ra119.001623","title":"Associations of the Fecal Microbial Proteome Composition and Proneness to Diet-induced Obesity","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Crohn's and Colitis Foundation","keywords":"Obesity; Gut flora; Feces; Biology; Microbiome; Cohort; Composition (language); Physiology; Proteome; Endocrinology; Internal medicine; Immunology; Medicine; Genetics; Ecology","score_opus":0.007846083174227891,"score_gpt":0.2272307013222737,"score_spread":0.2193846181480458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953493704","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734515,0.00024414444,0.00088846363,0.000054329365,0.000021365517,0.000015090836,0.0008716536,0.00002518083,0.0005347162],"genre_scores_gemma":[0.9954828,0.00012332857,0.0009554318,0.00012053177,0.000013421595,0.000027025913,0.00088432507,0.000018208513,0.0023749159],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997223,0.00004000568,0.000025374702,0.00009565834,0.00005860239,0.000057990506],"domain_scores_gemma":[0.99941957,0.000049991868,0.00019329312,0.00008025147,0.00004172689,0.00021520715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048617914,0.0004817032,0.0004760088,0.0008970756,0.0004695665,0.00078526774,0.00018783897,0.00040530477,0.0047933264],"category_scores_gemma":[0.0004974868,0.00023449126,0.00050329504,0.00034119582,0.00028704014,0.00031581605,0.0006897111,0.0009522417,0.000381766],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032758466,0.0004372494,0.73536927,0.00007805034,0.00058149826,0.00043056018,0.00019513209,0.00007782223,0.24902743,0.00018465312,0.00040762074,0.009934815],"study_design_scores_gemma":[0.0000123534155,0.00041546914,0.9922914,0.000008832479,0.00009103075,0.00054877735,0.00013034443,0.00015642674,0.0054106163,0.00010239373,0.0008260762,0.000006403668],"about_ca_topic_score_codex":0.00087517535,"about_ca_topic_score_gemma":0.0020129709,"teacher_disagreement_score":0.0047933264,"about_ca_system_score_codex":0.00012250146,"about_ca_system_score_gemma":0.00017378888,"threshold_uncertainty_score":0.016035259},"labels":[],"label_agreement":null},{"id":"W2954232647","doi":"10.1074/mcp.ra119.001612","title":"Multi-omics Biomarker Pipeline Reveals Elevated Levels of Protein-glutamine Gamma-glutamyltransferase 4 in Seminal Plasma of Prostate Cancer Patients","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Calgary; University of Toronto; University Health Network; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research; Prostate Cancer Canada; Government of Canada","keywords":"Prostate cancer; Biomarker; Prostate; Biomarker discovery; Proteomics; Cancer; PCA3; Cancer biomarkers; Medicine; Oncology; Cancer research; Internal medicine; Biology; Biochemistry; Gene","score_opus":0.01792547505564822,"score_gpt":0.2764582476630557,"score_spread":0.2585327726074075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2954232647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9289784,0.011180083,0.015040711,0.0024293659,0.0003505195,0.000106530024,0.03597185,0.0016875186,0.004255051],"genre_scores_gemma":[0.9700724,0.001396814,0.010342208,0.0007953419,0.00006450664,0.00006458328,0.015336546,0.00006542313,0.0018620457],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993955,0.00013524873,0.00004988318,0.00021648189,0.000119716264,0.00008307115],"domain_scores_gemma":[0.9996308,0.000111152985,0.000086208805,0.000036897658,0.000087073,0.000047883415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012719671,0.0007975412,0.0007391129,0.0012168,0.00043339844,0.0013989466,0.00029686,0.00059625093,0.0023795178],"category_scores_gemma":[0.0017667548,0.00022145058,0.0010211403,0.0012400316,0.00021797215,0.00044614542,0.0009607107,0.00066099275,0.0008134871],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004100172,0.0002993454,0.6741603,0.0014470202,0.0030711768,0.00079546124,0.00047604437,0.007038762,0.16531605,0.0012146386,0.014380435,0.12770057],"study_design_scores_gemma":[0.00015902412,0.0010585883,0.82460374,0.00033407882,0.0018128724,0.0028521926,0.001027234,0.046693813,0.07761788,0.005581,0.03808233,0.00017725119],"about_ca_topic_score_codex":0.0023538833,"about_ca_topic_score_gemma":0.0034185103,"teacher_disagreement_score":0.0023795178,"about_ca_system_score_codex":0.00047190904,"about_ca_system_score_gemma":0.0009834691,"threshold_uncertainty_score":0.00796026},"labels":[],"label_agreement":null},{"id":"W2955152582","doi":"10.1074/mcp.tir119.001412","title":"Prediction of LC-MS/MS Properties of Peptides from Sequence by Deep Learning","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto; University of Waterloo","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation; Canada Research Chairs; Genome Canada","keywords":"Deep learning; Construct (python library); Sequence (biology); Artificial intelligence; Computer science; Artificial neural network; Sequence learning; Pattern recognition (psychology); Chemistry","score_opus":0.012210423276887135,"score_gpt":0.19938259227292704,"score_spread":0.18717216899603992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2955152582","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.41867608,0.0015656652,0.5654413,0.00043299398,0.00008744805,0.00020750548,0.0038621405,0.005671121,0.0040556723],"genre_scores_gemma":[0.88973475,0.0009557136,0.101580635,0.00025598184,0.00003117599,0.00018569871,0.004961997,0.00025849463,0.0020354819],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99979085,0.000032295542,0.000014554631,0.000074035015,0.00006385413,0.000024396651],"domain_scores_gemma":[0.99933654,0.0002640779,0.00013756531,0.00006546424,0.00015976492,0.000036531674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001095703,0.0010824297,0.00046351284,0.0009264338,0.0002228101,0.0007494803,0.00057260087,0.0005627965,0.0019421994],"category_scores_gemma":[0.0021017713,0.00029379298,0.0007172101,0.0005982837,0.00029263174,0.0011390287,0.00039239344,0.0006968975,0.001378539],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012793706,0.0008663927,0.029347192,0.0011137743,0.00048858905,0.0006302227,0.000079786,0.30474472,0.36194482,0.0026325677,0.006215346,0.29065725],"study_design_scores_gemma":[0.000013575587,0.000057817015,0.0028092558,0.000010918564,0.000025869675,0.00008251104,0.0000065183735,0.96590394,0.029247517,0.0013521005,0.00047438694,0.000015689973],"about_ca_topic_score_codex":0.0014152951,"about_ca_topic_score_gemma":0.0026220107,"teacher_disagreement_score":0.0019421994,"about_ca_system_score_codex":0.00075866026,"about_ca_system_score_gemma":0.0008003634,"threshold_uncertainty_score":0.006497264},"labels":[],"label_agreement":null},{"id":"W2966772508","doi":"10.1074/mcp.ra119.001521","title":"Defining Protein Pattern Differences Among Molecular Subtypes of Diffuse Gliomas Using Mass Spectrometry*[S]","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glioma Diagnosis and Treatment","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Princess Margaret Cancer Centre; University Health Network","funders":"Cancer Research Society; World Health Organization","keywords":"Glioma; Biology; Proteome; Transcriptome; Molecular biology; Cancer research; Epigenetics; Computational biology; Genetics; Gene; Gene expression","score_opus":0.008049784850366871,"score_gpt":0.21824665950605188,"score_spread":0.210196874655685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966772508","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98171014,0.003137168,0.010176262,0.0003875587,0.00008682368,0.000059791702,0.0022255592,0.00015927236,0.0020575346],"genre_scores_gemma":[0.973459,0.0026173308,0.01908152,0.00031123063,0.000050348874,0.00005042119,0.0027559444,0.000040484476,0.0016337378],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990356,0.0000083808345,0.000011359552,0.000033310425,0.000022478405,0.000020858335],"domain_scores_gemma":[0.99982893,0.000022033562,0.000053788466,0.000016484442,0.000044149,0.00003466075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024540105,0.00032852162,0.00020678119,0.00080511253,0.00021168082,0.0005323026,0.00020671949,0.00034059084,0.0008290968],"category_scores_gemma":[0.0003543433,0.000103107624,0.00022084248,0.00046704456,0.00022125496,0.0002493295,0.00021850149,0.00032161895,0.00036931207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022890887,0.000019813237,0.011228127,0.00011750026,0.000049776896,0.0001748933,0.00005598643,0.000039356757,0.98038745,0.00015451659,0.0002341157,0.007309435],"study_design_scores_gemma":[0.000029004112,0.00033892965,0.3967809,0.000037619615,0.00020742722,0.0060073626,0.00048085555,0.0031679845,0.581117,0.0008275479,0.010967637,0.000037798924],"about_ca_topic_score_codex":0.001032469,"about_ca_topic_score_gemma":0.0022121693,"teacher_disagreement_score":0.001032469,"about_ca_system_score_codex":0.000161304,"about_ca_system_score_gemma":0.00017072818,"threshold_uncertainty_score":0.0027736425},"labels":[],"label_agreement":null},{"id":"W2970422942","doi":"10.1074/mcp.tir119.001560","title":"Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Cancer Society Research Institute; Canada Research Chairs; Centre for Blood Research, University of British Columbia; BC Children's Hospital; Michael Smith Health Research BC; Michael Cuccione Foundation; European Commission; BC Children’s Hospital Foundation; European Research Council; Children's Hospital Foundation","keywords":"Microscale chemistry; Proteome; Chemistry; Proteolysis; Chromatography; Computational biology; Biology; Biochemistry; Enzyme; Mathematics","score_opus":0.007318106584040458,"score_gpt":0.23049133525759097,"score_spread":0.22317322867355052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2970422942","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80395216,0.003934754,0.18648456,0.00024213361,0.00009467108,0.00014974148,0.0022835603,0.00060133147,0.0022570852],"genre_scores_gemma":[0.83818483,0.003295986,0.15169546,0.0003141474,0.00005767141,0.00039993273,0.0028506515,0.00017947816,0.0030218146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99981076,0.00001750773,0.00001271062,0.00008207928,0.000058508063,0.000018467139],"domain_scores_gemma":[0.999742,0.000104259125,0.000053993466,0.00003589873,0.000035576144,0.000028270475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029183016,0.00037219052,0.00025767603,0.00029964032,0.00022235679,0.00035046734,0.00024497628,0.00033313263,0.0006331215],"category_scores_gemma":[0.00041022978,0.00020108966,0.00017842453,0.00023713145,0.00026758917,0.0003718967,0.0003253105,0.0007558107,0.0003934953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017866792,0.0000051219545,0.00021983543,0.000030560142,0.0000041631984,0.000014602866,0.000009649679,0.00003229965,0.9985286,0.000034517827,0.000023447566,0.0010792913],"study_design_scores_gemma":[0.00000391556,0.00006531978,0.010204149,0.000009857243,0.000013158397,0.00024756763,0.000028547889,0.001499767,0.9859676,0.00022166692,0.0017309673,0.000007486226],"about_ca_topic_score_codex":0.00020748626,"about_ca_topic_score_gemma":0.0008784458,"teacher_disagreement_score":0.0006331215,"about_ca_system_score_codex":0.00019293407,"about_ca_system_score_gemma":0.00016795227,"threshold_uncertainty_score":0.0021179914},"labels":[],"label_agreement":null},{"id":"W2973105130","doi":"10.1074/mcp.ra119.001645","title":"BioID Performed on Golgi Enriched Fractions Identify C10orf76 as a GBF1 Binding Protein Essential for Golgi Maintenance and Secretion","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Alberta","funders":"Canadian Institutes of Health Research; Institute of Genetics; Government of Canada","keywords":"Golgi apparatus; Secretion; Cell biology; Brefeldin A; Biotinylation; COPI; Secretory pathway; Golgi membrane; Biology; Endoplasmic reticulum; Chemistry; Biochemistry","score_opus":0.005323050214598834,"score_gpt":0.23035289040281315,"score_spread":0.22502984018821431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2973105130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.962571,0.006938208,0.010761506,0.00091563206,0.00036790888,0.000082812774,0.01066871,0.00032178147,0.0073723835],"genre_scores_gemma":[0.9183147,0.0046525626,0.023776697,0.0007354419,0.0000673057,0.0001214743,0.026531007,0.00024025778,0.02556049],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99981254,0.000011557498,0.000015231765,0.00007027216,0.000050359904,0.000040010327],"domain_scores_gemma":[0.9998727,0.000018923274,0.0000268925,0.000017716116,0.000022018288,0.000041705338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022313814,0.0011616987,0.00038652614,0.00074128085,0.00076092186,0.0006427226,0.00036893363,0.00087808265,0.005556819],"category_scores_gemma":[0.00024437744,0.00023966242,0.00059614435,0.00047432407,0.00043218795,0.00033094845,0.00048671747,0.0007926071,0.003691855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015309846,0.000022569708,0.001176624,0.00008867346,0.00001682169,0.00028774235,0.000021254675,0.000030894058,0.9951351,0.00013297975,0.0003892952,0.0025449097],"study_design_scores_gemma":[0.000017164375,0.000076919736,0.036179904,0.000025557094,0.000029862887,0.0021205163,0.000077333774,0.00072883576,0.948195,0.00018821226,0.012346664,0.000014048434],"about_ca_topic_score_codex":0.0020185912,"about_ca_topic_score_gemma":0.0039030209,"teacher_disagreement_score":0.005556819,"about_ca_system_score_codex":0.0008985722,"about_ca_system_score_gemma":0.00041874938,"threshold_uncertainty_score":0.018589437},"labels":[],"label_agreement":null},{"id":"W2978053195","doi":"10.1074/mcp.tir119.001559","title":"Fast and Accurate Bacterial Species Identification in Urine Specimens Using LC-MS/MS Mass Spectrometry and Machine Learning*","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Hôpital de l'Enfant-Jésus; Université Laval","funders":"","keywords":"Urine; Mass spectrometry; Computational biology; Identification (biology); Chromatography; Proteomics; Selected reaction monitoring; Microbiological culture; Computer science; Bacteria; Biology; Chemistry; Tandem mass spectrometry; Biochemistry; Genetics","score_opus":0.013515380830179995,"score_gpt":0.2247012873885447,"score_spread":0.2111859065583647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978053195","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2968292,0.009286573,0.68521875,0.00063048315,0.0003161243,0.000580601,0.001578356,0.0027819732,0.0027779806],"genre_scores_gemma":[0.31658116,0.0026188311,0.6774941,0.00041684697,0.00009148257,0.0003701022,0.0007111325,0.00011784139,0.0015984703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984835,0.00028419576,0.00015511841,0.00040886132,0.0005590498,0.000109282126],"domain_scores_gemma":[0.99919385,0.0002618915,0.0001334185,0.00012537024,0.0002341014,0.0000514201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016113413,0.0010072754,0.0008039438,0.0017017274,0.00053421146,0.0007494054,0.00052786974,0.0007978704,0.000610263],"category_scores_gemma":[0.0016382702,0.00035845835,0.000438856,0.0007946115,0.0005059519,0.00083545,0.00075100246,0.000671408,0.0011338601],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012255288,0.00013081006,0.0038804915,0.00020401039,0.00003171018,0.00012393341,0.000046513695,0.00066758785,0.91442245,0.00027966782,0.00033969837,0.07975066],"study_design_scores_gemma":[0.000024267181,0.0005770798,0.016145108,0.0000776729,0.00004767624,0.0014021274,0.00006502762,0.04666692,0.9284359,0.0010051673,0.005457279,0.00009571486],"about_ca_topic_score_codex":0.00055161753,"about_ca_topic_score_gemma":0.0009828827,"teacher_disagreement_score":0.0017017274,"about_ca_system_score_codex":0.0003123516,"about_ca_system_score_gemma":0.00052950066,"threshold_uncertainty_score":0.008521676},"labels":[],"label_agreement":null},{"id":"W2979940307","doi":"10.1074/mcp.ra119.001677","title":"NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Alberta Glycomics Centre; University of Alberta; Health Canada","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Österreichische Forschungsförderungsgesellschaft; Vetenskapsrådet; National Research Foundation of Korea; Alberta Glycomics Centre; Magyarország Kormánya; Chinese Academy of Sciences; National Cancer Institute; Svenska Forskningsrådet Formas; Health Canada; National Natural Science Foundation of China; Government of Canada; Deutsche Forschungsgemeinschaft; European Commission; ARC Centre for Nanoscale BioPhotonics; National Institute of General Medical Sciences; Bundesministerium für Bildung und Forschung; National Institutes of Health; Sage Therapeutics; Science Foundation Ireland; Texas Tech University","keywords":"NIST; Monoclonal antibody; Glycosylation; Computational biology; Chemistry; Antibody; Biochemistry; Biology; Computer science; Immunology","score_opus":0.03034619597021518,"score_gpt":0.3726357336532356,"score_spread":0.3422895376830204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2979940307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9496997,0.003491576,0.04014112,0.00020210852,0.00013358876,0.00041081812,0.0008157096,0.00037377494,0.0047315713],"genre_scores_gemma":[0.96852744,0.0005306279,0.028136725,0.0002283343,0.000068709,0.00020670684,0.0015210293,0.000090800255,0.00068967097],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9407971,0.027738972,0.0036457113,0.006443246,0.020258665,0.0011163693],"domain_scores_gemma":[0.9725417,0.011950767,0.0032622293,0.0045002685,0.007022415,0.0007227312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.037811108,0.00095636817,0.0006138181,0.0034449757,0.0014108422,0.0010629953,0.0010210786,0.0010459716,0.0005496895],"category_scores_gemma":[0.030300466,0.0003642352,0.0010819023,0.0025902784,0.0015900945,0.0005410554,0.0021292435,0.0006620204,0.00039060946],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003660863,0.0010505171,0.43489638,0.00089157757,0.0019544265,0.00043757918,0.004445152,0.0026378103,0.44554022,0.0013439521,0.0012548062,0.10188668],"study_design_scores_gemma":[0.00012272348,0.004999581,0.6562291,0.00013410006,0.0008682311,0.0020895617,0.0010469966,0.004892133,0.32179016,0.0006648461,0.006977152,0.00018536099],"about_ca_topic_score_codex":0.002371199,"about_ca_topic_score_gemma":0.0034597605,"teacher_disagreement_score":0.037811108,"about_ca_system_score_codex":0.0009363466,"about_ca_system_score_gemma":0.0012263493,"threshold_uncertainty_score":0.19996667},"labels":[],"label_agreement":null},{"id":"W2983764075","doi":"10.1074/mcp.ra119.001811","title":"Proteomic Analysis Reveals a Role for RSK in p120-catenin Phosphorylation and Melanoma Cell-Cell Adhesion","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular Mechanics and Interactions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Adherens junction; Cell biology; MAPK/ERK pathway; Ribosomal s6 kinase; Melanoma; Cell adhesion; Biology; Catenin; Cell growth; Protein kinase A; Kinase; Phosphorylation; Focal adhesion; Signal transduction; Cancer research; Cell; Cadherin; Wnt signaling pathway; PI3K/AKT/mTOR pathway; Biochemistry; P70-S6 Kinase 1","score_opus":0.003871656835783585,"score_gpt":0.20532506255713134,"score_spread":0.20145340572134776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2983764075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995576,0.001569997,0.0016263011,0.000065787484,0.00001015769,0.000011299111,0.00024040067,0.000020582207,0.000879321],"genre_scores_gemma":[0.99417615,0.0010804293,0.0023530147,0.00005266179,0.0000086881055,0.00001246003,0.0007492481,0.000008251332,0.0015592262],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993694,0.0000053356584,0.0000046574896,0.000021091251,0.000019570669,0.0000123832715],"domain_scores_gemma":[0.9999542,0.0000046156247,0.000015100186,0.0000031060122,0.0000064522824,0.000016531963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007057429,0.0003000254,0.00018021262,0.00030718555,0.00022229996,0.00023939018,0.00012760078,0.00025537965,0.0009840741],"category_scores_gemma":[0.00009288312,0.000120330806,0.0003281807,0.00021043315,0.00012748342,0.00023036216,0.00015729551,0.00027122468,0.0004382181],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051740295,0.000010422002,0.00042927358,0.000025294821,0.000006054689,0.000083578096,0.000008619839,0.000022167906,0.9987349,0.000038770027,0.000012424399,0.00057676755],"study_design_scores_gemma":[0.000017989674,0.00020783214,0.110882975,0.000012747176,0.000053001615,0.0020462873,0.000104390405,0.002411287,0.8814338,0.00017798843,0.0026358713,0.000015897345],"about_ca_topic_score_codex":0.00054447266,"about_ca_topic_score_gemma":0.00086803525,"teacher_disagreement_score":0.0009840741,"about_ca_system_score_codex":0.00018266228,"about_ca_system_score_gemma":0.00013477926,"threshold_uncertainty_score":0.0032920241},"labels":[],"label_agreement":null},{"id":"W2985622460","doi":"10.1074/mcp.tir119.001752","title":"Assessing Protein Sequence Database Suitability Using De Novo Sequencing","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Office of Extramural Research, National Institutes of Health; National Institute of General Medical Sciences","keywords":"Computational biology; Sequence (biology); Sequence database; Protein sequencing; Computer science; Biology; Database; Peptide sequence; Genetics; Gene","score_opus":0.03392472601878817,"score_gpt":0.27869652617327434,"score_spread":0.24477180015448619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2985622460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6714637,0.0045394176,0.30701914,0.000824508,0.00020870408,0.0010559219,0.0065381415,0.0042370814,0.004113337],"genre_scores_gemma":[0.5299059,0.0020947012,0.44738397,0.00058836385,0.000048292204,0.0007011878,0.016433531,0.0008417496,0.0020023484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9910467,0.0027624655,0.0011924853,0.0020612078,0.0026266933,0.0003104036],"domain_scores_gemma":[0.98207194,0.009219791,0.0024613123,0.0020918201,0.003725763,0.00042935158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.016547868,0.0009480683,0.0011037188,0.0032433958,0.0011476246,0.0031162526,0.0012987024,0.0013473718,0.0019280979],"category_scores_gemma":[0.028763026,0.0007609566,0.00101629,0.0028375715,0.0005759957,0.0023532507,0.0016821944,0.0011352369,0.0016587693],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027690493,0.00046758508,0.043287817,0.0013471016,0.00066370657,0.001331911,0.0010497574,0.02186259,0.7136901,0.0032100158,0.0056753433,0.20464505],"study_design_scores_gemma":[0.00021599264,0.0011402846,0.05367879,0.00027956697,0.0005402641,0.0026229706,0.0007714447,0.24688058,0.6461108,0.0068188272,0.040562242,0.00037836193],"about_ca_topic_score_codex":0.0017035323,"about_ca_topic_score_gemma":0.0031597866,"teacher_disagreement_score":0.016547868,"about_ca_system_score_codex":0.001239711,"about_ca_system_score_gemma":0.0011617208,"threshold_uncertainty_score":0.08751458},"labels":[],"label_agreement":null},{"id":"W2990490132","doi":"10.1074/mcp.r119.001743","title":"The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Heart Institute; University of Ottawa; Centre Hospitalier Universitaire Sainte-Justine","funders":"Biotechnology and Biological Sciences Research Council; UK Research and Innovation; Epic Foundation; Wellcome Trust; Wellcome","keywords":"Context (archaeology); Precision medicine; Data science; Computer science; Computational biology; Medicine; Immunology; Biology","score_opus":0.00491413264152805,"score_gpt":0.21038388825247006,"score_spread":0.20546975561094202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2990490132","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029315539,0.35894918,0.24236445,0.2993625,0.009620908,0.0010509702,0.02197304,0.0052333814,0.032129996],"genre_scores_gemma":[0.1329669,0.24749331,0.47827485,0.072238795,0.010501795,0.0027643119,0.039150275,0.0013691542,0.01524056],"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.99712014,0.0017827202,0.00013309794,0.00031665142,0.00042542972,0.0002219413],"domain_scores_gemma":[0.98957527,0.004973799,0.00090190774,0.000796378,0.0014170852,0.002335532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01427009,0.001145844,0.0012978313,0.002282108,0.0006562743,0.0029161451,0.0013289036,0.0023355414,0.008225892],"category_scores_gemma":[0.011688376,0.0003411098,0.0010544463,0.0015168021,0.001443391,0.0029815573,0.0045874463,0.0033478641,0.003167078],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001453404,0.00027340822,0.012121246,0.0019189481,0.0006215557,0.00037898927,0.0003479536,0.0026908293,0.008961796,0.056079857,0.16902635,0.7461256],"study_design_scores_gemma":[0.0004254008,0.0010532718,0.014935957,0.0022039888,0.00041654208,0.00078644726,0.00027053765,0.0040812003,0.0055689123,0.12999363,0.84014976,0.00011445294],"about_ca_topic_score_codex":0.0014444565,"about_ca_topic_score_gemma":0.0012566545,"teacher_disagreement_score":0.01427009,"about_ca_system_score_codex":0.0012383761,"about_ca_system_score_gemma":0.006805414,"threshold_uncertainty_score":0.0754683},"labels":[],"label_agreement":null},{"id":"W2992749711","doi":"10.1074/mcp.r119.001803","title":"Next-generation Interactomics: Considerations for the Use of Co-elution to Measure Protein Interaction Networks","year":2019,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Michael Smith Health Research BC; Simon Fraser University; University of British Columbia","funders":"Genome British Columbia; Government of Canada; Genome Canada","keywords":"Measure (data warehouse); Elution; Computer science; Chemistry; Chromatography; Data mining","score_opus":0.15882483601118344,"score_gpt":0.32099075658426374,"score_spread":0.1621659205730803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2992749711","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000074959884,0.9949438,0.002299606,0.00082173786,0.00038961973,0.000013128916,0.000037114205,0.00003187801,0.0013880938],"genre_scores_gemma":[0.00048243997,0.9942458,0.0032584302,0.00068133336,0.0002768679,0.000034769084,0.00007119315,0.000010827355,0.0009383773],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992829,0.00016491923,0.000059157566,0.00012213392,0.00032649774,0.00004438813],"domain_scores_gemma":[0.99776244,0.0014701018,0.00012195925,0.00008016121,0.0004642626,0.00010110603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032357508,0.0014718594,0.002407466,0.0037987013,0.00040628194,0.0021086952,0.002277894,0.0026777098,0.002700253],"category_scores_gemma":[0.0023125813,0.0006369602,0.0008218658,0.0030788702,0.0014844828,0.003776976,0.0013143409,0.0043984777,0.0038235192],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008330559,0.000084842584,0.00022327816,0.019845994,0.00016040262,0.00033334285,0.00008775259,0.0009803533,0.009799677,0.030846119,0.0413658,0.8961891],"study_design_scores_gemma":[0.000009697146,0.00007276162,0.00038255844,0.0023514365,0.000078159785,0.00092970656,0.000057495814,0.00025379643,0.0021787826,0.009182923,0.9844583,0.000044300363],"about_ca_topic_score_codex":0.001435608,"about_ca_topic_score_gemma":0.0021318123,"teacher_disagreement_score":0.0037987013,"about_ca_system_score_codex":0.0015094092,"about_ca_system_score_gemma":0.0013499175,"threshold_uncertainty_score":0.017112553},"labels":[],"label_agreement":null},{"id":"W2993833902","doi":"10.1074/mcp.ra119.001785","title":"Profiling the Surfaceome Identifies Therapeutic Targets for Cells with Hyperactive mTORC1 Signaling","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"PI3K/AKT/mTOR signaling in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"DOD Prostate Cancer Research Program; National Institute of General Medical Sciences; University of California, San Francisco; National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; American Cancer Society; Foundation for the National Institutes of Health; U.S. Department of Defense","keywords":"mTORC1; Signal transduction; Aminopeptidase; Biology; Proteomics; Cell biology; Cancer research; Computational biology; PI3K/AKT/mTOR pathway; Gene; Genetics; Amino acid; Leucine","score_opus":0.007450491483846908,"score_gpt":0.22362655256534997,"score_spread":0.21617606108150306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2993833902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98073316,0.0031401643,0.007851336,0.00064081035,0.00008962591,0.00006780768,0.0023852503,0.00030085762,0.0047907867],"genre_scores_gemma":[0.9868036,0.0020486296,0.0043279147,0.00043156958,0.000029589677,0.0000856467,0.0023794703,0.00008299849,0.0038105918],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988616,0.000008189425,0.000003997877,0.000024769692,0.000044484957,0.000032414093],"domain_scores_gemma":[0.9999559,0.000007088979,0.000009447939,0.0000042113884,0.000013232254,0.000010158514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010868114,0.00034199402,0.00045802398,0.00047371883,0.0002929357,0.00081021787,0.00016055454,0.000473309,0.0018776004],"category_scores_gemma":[0.00017820996,0.00014048305,0.00035256796,0.00043690624,0.00016480658,0.0003210776,0.00028097903,0.00050652365,0.0007789284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022991294,0.00002058525,0.0013550584,0.000066110624,0.000024075136,0.00007052159,0.000019613868,0.00021446969,0.9902194,0.00022141384,0.00045979628,0.0070989626],"study_design_scores_gemma":[0.00005794645,0.0004270872,0.053873494,0.00002903265,0.00016632561,0.00095546286,0.0002695301,0.01036757,0.9177634,0.0011879231,0.014875026,0.000027209247],"about_ca_topic_score_codex":0.00049045094,"about_ca_topic_score_gemma":0.0008833547,"teacher_disagreement_score":0.0018776004,"about_ca_system_score_codex":0.000366382,"about_ca_system_score_gemma":0.00024303814,"threshold_uncertainty_score":0.006281197},"labels":[],"label_agreement":null},{"id":"W2997285364","doi":"10.1074/mcp.tir119.001820","title":"Concentration Determination of &gt;200 Proteins in Dried Blood Spots for Biomarker Discovery and Validation","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biosimilars and Bioanalytical Methods","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Victoria General Hospital; Jewish General Hospital; McGill University; University of British Columbia; University of Victoria","funders":"Genome British Columbia; Leading Edge Endowment Fund; Genome Canada","keywords":"Analyte; Biomarker discovery; Biomarker; Dried blood; Chemistry; Dried blood spot; Chromatography; Coefficient of variation; Peptide; Bioanalysis; Quantitative proteomics; Protein stability; Proteomics; Biochemistry","score_opus":0.020272407128666216,"score_gpt":0.25457144651534397,"score_spread":0.23429903938667776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2997285364","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3227712,0.038756374,0.6081423,0.0023541374,0.0014126204,0.003099692,0.0053573144,0.005230304,0.012876059],"genre_scores_gemma":[0.38102704,0.0140696,0.5804993,0.0023156446,0.00042315005,0.0026295676,0.0046937955,0.0005934673,0.01374832],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9951219,0.0012418694,0.000329559,0.00091919553,0.0022014675,0.0001859962],"domain_scores_gemma":[0.99815756,0.0004828673,0.00035063742,0.0002247611,0.00068698364,0.000097266675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0049001714,0.0015478329,0.0008970137,0.00227706,0.0005495287,0.0016773632,0.0009914591,0.0014356347,0.0022013225],"category_scores_gemma":[0.0052697007,0.00063189236,0.00074278103,0.0014373707,0.001339933,0.00074846647,0.00074720365,0.0010142293,0.0023908652],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038017347,0.00019559037,0.0024761234,0.0005462014,0.00011023374,0.00020963662,0.00015350996,0.0007247692,0.9208426,0.0009955631,0.0024349673,0.07093074],"study_design_scores_gemma":[0.000045025503,0.000713793,0.008733248,0.00014892386,0.000102746344,0.0009553036,0.00006572794,0.010491361,0.9524096,0.00080847245,0.025461745,0.0000639665],"about_ca_topic_score_codex":0.0010231263,"about_ca_topic_score_gemma":0.0017079911,"teacher_disagreement_score":0.0049001714,"about_ca_system_score_codex":0.0009154846,"about_ca_system_score_gemma":0.0010211077,"threshold_uncertainty_score":0.025914907},"labels":[],"label_agreement":null},{"id":"W2997860055","doi":"10.1074/mcp.ra119.001858","title":"Peptidomic Analysis of Urine from Youths with Early Type 1 Diabetes Reveals Novel Bioactivity of Uromodulin Peptides In Vitro","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Hydrolysis and Bioactive Peptides","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University Health Network; University of Toronto; Toronto General Hospital; Toronto Rehabilitation Institute","funders":"Breakthrough T1D Canada; Canadian Institutes of Health Research; Diabetes Canada; Juvenile Diabetes Research Foundation Canada; Heart and Stroke Foundation of Canada","keywords":"Tamm–Horsfall protein; Proteases; Diabetic nephropathy; Diabetes mellitus; Kidney; Chemistry; Peptide; Type 2 diabetes; Urinary system; Biology; Endocrinology; Internal medicine; Biochemistry; Medicine; Enzyme","score_opus":0.005509393600965453,"score_gpt":0.1980355962944597,"score_spread":0.19252620269349424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2997860055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938427,0.0023050755,0.0019826312,0.00010429813,0.00004425865,0.0000196399,0.0013300414,0.000032566135,0.0003386767],"genre_scores_gemma":[0.99246573,0.00138991,0.0035943247,0.00018502536,0.00004926075,0.00001645614,0.0016732706,0.00001997727,0.0006060728],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980503,0.000031187723,0.000017818,0.000058502144,0.000050729963,0.00003674178],"domain_scores_gemma":[0.99973494,0.00005690268,0.00006956899,0.0000148395075,0.000056321758,0.000067389934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023585724,0.00039866014,0.0004654606,0.00072306034,0.00026386222,0.0005862497,0.00013230577,0.00026723123,0.0007376552],"category_scores_gemma":[0.000597186,0.00010801412,0.00030504572,0.0005166228,0.00017518943,0.00013918728,0.00032814944,0.00041043243,0.00018708163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008683454,0.000103506805,0.20803799,0.00027066268,0.00020503439,0.0015473658,0.00048296762,0.00012359125,0.75803226,0.00008756438,0.0004342789,0.029806495],"study_design_scores_gemma":[0.000014110486,0.00051727716,0.9132359,0.000052083255,0.00013857974,0.0038938515,0.00055075367,0.0006537114,0.07821273,0.00012681913,0.0025848139,0.00001938337],"about_ca_topic_score_codex":0.0012446797,"about_ca_topic_score_gemma":0.0015535842,"teacher_disagreement_score":0.0012446797,"about_ca_system_score_codex":0.00009702858,"about_ca_system_score_gemma":0.00018608855,"threshold_uncertainty_score":0.0024748445},"labels":[],"label_agreement":null},{"id":"W3005901855","doi":"10.1074/mcp.tir119.001906","title":"A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":463,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada)","funders":"Novo Nordisk; European Commission","keywords":"Orbitrap; Mass spectrometry; Chemistry; Ion-mobility spectrometry; Chromatography; Proteome; Analytical Chemistry (journal); Hybrid mass spectrometer; Triple quadrupole mass spectrometer; Spectrometer; Tandem mass spectrometry; Selected reaction monitoring; Biochemistry","score_opus":0.010305168935831032,"score_gpt":0.23770125509793968,"score_spread":0.22739608616210866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3005901855","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.34394783,0.011530553,0.62150466,0.0012848768,0.0003745365,0.00039387503,0.0032808918,0.012244893,0.005437918],"genre_scores_gemma":[0.2940296,0.002633331,0.69549465,0.00067740306,0.00017046208,0.00034925016,0.002324617,0.0006299382,0.0036908193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988863,0.00017228567,0.00006943037,0.00034283884,0.00044977682,0.00007937185],"domain_scores_gemma":[0.9992974,0.00029758146,0.00010970539,0.00007062452,0.0001738073,0.000050843515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014185281,0.0012266296,0.0007653167,0.0011675251,0.00049155176,0.0009396865,0.00079389097,0.001119359,0.002368065],"category_scores_gemma":[0.0014640752,0.00040331946,0.0003550984,0.00073866366,0.0005003328,0.0016420683,0.0008761261,0.00088402495,0.0010711225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006433555,0.000016825881,0.000262801,0.00008809441,0.000011468817,0.000043434244,0.000015814821,0.00011799471,0.9829069,0.00025745097,0.0005420374,0.015672779],"study_design_scores_gemma":[0.000053975094,0.00036489367,0.009164831,0.00003568162,0.00005012259,0.0020512757,0.0000412239,0.012194116,0.95613647,0.0008688484,0.01895713,0.00008134132],"about_ca_topic_score_codex":0.0007238104,"about_ca_topic_score_gemma":0.0016171788,"teacher_disagreement_score":0.002368065,"about_ca_system_score_codex":0.00044812783,"about_ca_system_score_gemma":0.00064558804,"threshold_uncertainty_score":0.007921934},"labels":[],"label_agreement":null},{"id":"W3005935183","doi":"10.1074/mcp.ra119.001839","title":"Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital; Genome British Columbia; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Warren Y. Soper Charitable Trust; Fondation De Famille Alvin Segal; Jewish General Hospital; Leading Edge Endowment Fund; Deutsche Forschungsgemeinschaft; Genome British Columbia; McGill University; University of Victoria; Genome Canada","keywords":"Mass spectrometry; Chemistry; Identification (biology); Chromatography; Tandem affinity purification; Biochemistry; Affinity chromatography; Biology; Enzyme","score_opus":0.014194303723493363,"score_gpt":0.2517604045515448,"score_spread":0.23756610082805144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3005935183","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.77404094,0.0034533557,0.21788032,0.00025783895,0.00004570213,0.00016767104,0.0011921363,0.0012568242,0.0017052576],"genre_scores_gemma":[0.75766045,0.0031584436,0.23258111,0.00022119781,0.000029545117,0.0001460601,0.0025943792,0.00021887987,0.0033899613],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996828,0.000037002123,0.000014731571,0.00009886919,0.00013438083,0.000032165386],"domain_scores_gemma":[0.99971384,0.00006214316,0.00008540287,0.000030656258,0.00007030343,0.000037589034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004736617,0.0008003764,0.00037431036,0.0006344438,0.00023297165,0.000517502,0.000465835,0.00037335366,0.0007477486],"category_scores_gemma":[0.00042415154,0.00022763533,0.0002849069,0.00034614964,0.00022334885,0.0004252864,0.0004221979,0.00059370534,0.00046870994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010619291,0.000006604921,0.00013667227,0.000025723784,0.0000047411177,0.000013055388,0.0000046676446,0.000043615437,0.9979867,0.000023192231,0.00001703944,0.0017274645],"study_design_scores_gemma":[0.0000034315308,0.000042843505,0.002430677,0.0000027120598,0.000014069746,0.00018483639,0.000009716029,0.0019049414,0.9938547,0.00002849584,0.0015167347,0.0000067845313],"about_ca_topic_score_codex":0.0008025576,"about_ca_topic_score_gemma":0.0018919088,"teacher_disagreement_score":0.0008025576,"about_ca_system_score_codex":0.00047021822,"about_ca_system_score_gemma":0.00040110806,"threshold_uncertainty_score":0.0034117103},"labels":[],"label_agreement":null},{"id":"W3007226290","doi":"10.1074/mcp.ra119.001841","title":"Proteomic Analysis of Salmonella-modified Membranes Reveals Adaptations to Macrophage Hosts","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Deutsche Forschungsgemeinschaft; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Salmonella enterica; Cell biology; Salmonella; Biology; Intracellular; Biogenesis; Compartment (ship); Intracellular parasite; Proteome; Macrophage; Cellular compartment; Cell; Bacteria; Biochemistry; Genetics","score_opus":0.027217302480034778,"score_gpt":0.23483526186495002,"score_spread":0.20761795938491523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007226290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955069,0.0010746485,0.0017926478,0.00014888048,0.000024680217,0.000009462016,0.0004540759,0.000021994436,0.0009667673],"genre_scores_gemma":[0.9940264,0.00084124785,0.0021986351,0.00009185896,0.000007911977,0.000009996822,0.0010831247,0.000015346224,0.0017254364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993217,0.000011624135,0.000003437625,0.000016146441,0.000014095606,0.000022535136],"domain_scores_gemma":[0.99991167,0.000015798914,0.00001847133,0.00000876706,0.000025591738,0.000019706182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015804738,0.00028062297,0.00013922685,0.00019434319,0.00019679489,0.0003240881,0.0001962326,0.00036429614,0.0008887427],"category_scores_gemma":[0.00020840147,0.00017374314,0.00022370071,0.00016857559,0.00019247326,0.00028753257,0.0002531407,0.00037048585,0.00048501918],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097814904,0.0000061074065,0.00043447633,0.000020944426,0.000005107403,0.000031277865,0.000013030612,0.000012098063,0.99897707,0.000033305027,0.000021118682,0.00034772846],"study_design_scores_gemma":[0.0000122686,0.00029282836,0.07990359,0.000025670035,0.000043545766,0.0009716505,0.00041737012,0.0014876937,0.9135254,0.00024689798,0.003055545,0.000017462691],"about_ca_topic_score_codex":0.0008596936,"about_ca_topic_score_gemma":0.001351081,"teacher_disagreement_score":0.0008887427,"about_ca_system_score_codex":0.00019389731,"about_ca_system_score_gemma":0.00014665457,"threshold_uncertainty_score":0.0029731393},"labels":[],"label_agreement":null},{"id":"W3010256122","doi":"10.1074/mcp.r120.001941","title":"Proximity Dependent Biotinylation: Key Enzymes and Adaptation to Proteomics Approaches","year":2020,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":208,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sinai Health System; Lunenfeld-Tanenbaum Research Institute","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada; Ontario Genomics; Genome Canada","keywords":"Protein Data Bank (RCSB PDB); Biotinylation; Proteome; Proteomics; Context (archaeology); Computational biology; Biochemistry; Biology; Enzyme; Computer science; Bioinformatics","score_opus":0.04644855001783623,"score_gpt":0.25394937517215393,"score_spread":0.2075008251543177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010256122","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019288462,0.99515176,0.0021431327,0.0003794901,0.0003891361,0.000013995854,0.00003612314,0.000033755445,0.0016597877],"genre_scores_gemma":[0.00082424964,0.9957585,0.0016939364,0.00034336594,0.00018029322,0.000024394636,0.00007391257,0.000010813591,0.0010904813],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991037,0.00016027916,0.000100213234,0.00024227507,0.00030630437,0.00008714411],"domain_scores_gemma":[0.9991473,0.0004583892,0.00007879594,0.000050212682,0.00020779834,0.00005736771],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001967944,0.0016968619,0.001708043,0.003432666,0.0003916768,0.0018547112,0.0019033842,0.0020261179,0.0026188241],"category_scores_gemma":[0.0017781969,0.0009951717,0.0008589006,0.0040324144,0.0014112567,0.0034233173,0.0014189936,0.004512287,0.004594773],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000113539056,0.00009645331,0.00021327977,0.025942178,0.000109841785,0.00035886138,0.00013376499,0.0008893288,0.014331639,0.02808058,0.024322916,0.9054076],"study_design_scores_gemma":[0.000007420815,0.00005511109,0.00018413985,0.0010750006,0.000039764516,0.00061250053,0.000029653549,0.000109448985,0.0046631056,0.0028368395,0.9903617,0.00002534642],"about_ca_topic_score_codex":0.0012727785,"about_ca_topic_score_gemma":0.0012958137,"teacher_disagreement_score":0.003432666,"about_ca_system_score_codex":0.0019255502,"about_ca_system_score_gemma":0.001536052,"threshold_uncertainty_score":0.013970852},"labels":[],"label_agreement":null},{"id":"W3010322897","doi":"10.1074/mcp.ra119.001909","title":"Human Hepatocyte Nuclear Factor 4-α Encodes Isoforms with Distinct Transcriptional Functions","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Institute of Nutrition, Metabolism and Diabetes; Institute of Cancer Research; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Gene isoform; Alternative splicing; Biology; Exon; Proteome; Transcription factor; Promoter; RNA splicing; Transcriptome; Nuclear receptor; Hepatocyte nuclear factor 4; Cell biology; Gene; Genetics; Gene expression","score_opus":0.014444698118286496,"score_gpt":0.20162205402300892,"score_spread":0.18717735590472243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010322897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98024094,0.0034171876,0.010365948,0.00011555402,0.00003529523,0.000030150537,0.003958254,0.000174659,0.0016620653],"genre_scores_gemma":[0.9665404,0.0022628747,0.011852886,0.00013761196,0.000031848565,0.000032085773,0.013481531,0.00005795943,0.0056028143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983335,0.000019585035,0.000013541197,0.00004778385,0.00005390908,0.000031753287],"domain_scores_gemma":[0.99983895,0.00002614895,0.00005558963,0.000024787569,0.000034692843,0.000019881958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015965871,0.00025408878,0.0001975469,0.00038561595,0.00014414065,0.00035938973,0.000121910656,0.00012790985,0.0009206442],"category_scores_gemma":[0.00018610044,0.00016512779,0.00027498454,0.00054237776,0.00014625043,0.00014978398,0.00014143184,0.00022984704,0.00077408756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039370212,0.00001320337,0.0047597163,0.00004975601,0.000020469508,0.0001735566,0.000042467873,0.0001103155,0.98536474,0.00015006542,0.00011845379,0.008803548],"study_design_scores_gemma":[0.00007024924,0.0005686058,0.16120154,0.000039471623,0.00013682284,0.0038520622,0.00022703457,0.003172015,0.7975557,0.0008605471,0.032280114,0.000035832338],"about_ca_topic_score_codex":0.0011628356,"about_ca_topic_score_gemma":0.0013762008,"teacher_disagreement_score":0.0011628356,"about_ca_system_score_codex":0.0002843707,"about_ca_system_score_gemma":0.00020592962,"threshold_uncertainty_score":0.0030798912},"labels":[],"label_agreement":null},{"id":"W3010451509","doi":"10.1074/mcp.ra119.001910","title":"Discovery of a Redox Thiol Switch: Implications for Cellular Energy Metabolism","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Sulfur Compounds in Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; Narodowym Centrum Nauki; National Institutes of Health; National Center for Research Resources; American Diabetes Association","keywords":"Thiol; Energy metabolism; Redox; Chemistry; Metabolism; Biophysics; Biochemistry; Biology; Inorganic chemistry","score_opus":0.01521157451200711,"score_gpt":0.23488973090574783,"score_spread":0.21967815639374072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010451509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8742343,0.025585873,0.061456848,0.018174173,0.0013167004,0.0000966726,0.000975261,0.0006189179,0.017541282],"genre_scores_gemma":[0.9670085,0.010069575,0.014873956,0.001152449,0.00020138084,0.00003328377,0.00050098286,0.000032897442,0.0061269966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999943,0.000009218781,0.0000032273344,0.000019301837,0.0000118048965,0.0000134048205],"domain_scores_gemma":[0.99990547,0.000024780093,0.000011752052,0.000009489235,0.000015529022,0.000033000368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041237395,0.0003297435,0.00032151776,0.00018589401,0.00024094636,0.00061703566,0.0003671395,0.00088309427,0.0018556427],"category_scores_gemma":[0.00025393188,0.000120674384,0.0002265715,0.00019522091,0.0005843477,0.0010223074,0.00035176388,0.00094542274,0.00040907817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037340884,0.00005769974,0.0008144343,0.00015151054,0.000014481379,0.00041150837,0.000043162432,0.0005537744,0.96200794,0.017414927,0.0007294658,0.017427787],"study_design_scores_gemma":[0.00005786662,0.00092834723,0.003921232,0.00003914051,0.000030717812,0.0012015899,0.00022702152,0.0037909306,0.921862,0.031268407,0.036628325,0.00004431645],"about_ca_topic_score_codex":0.0002756213,"about_ca_topic_score_gemma":0.00029499788,"teacher_disagreement_score":0.0018556427,"about_ca_system_score_codex":0.0004198542,"about_ca_system_score_gemma":0.00031305215,"threshold_uncertainty_score":0.006207764},"labels":[],"label_agreement":null},{"id":"W3011989760","doi":"10.1074/mcp.e120.002042","title":"Virtual Issue: Technological Innovations","year":2020,"lang":"en","type":"editorial","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute","funders":"","keywords":"Context (archaeology); Computer science; Function (biology); Data science; Posttranslational modification; Proteomics; Engineering ethics; Biology; Engineering","score_opus":0.007171199649536327,"score_gpt":0.24834904143895092,"score_spread":0.2411778417894146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3011989760","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007902131,0.005608401,0.0022487065,0.049451288,0.7318464,0.00041911704,0.0032351217,0.004418228,0.20198251],"genre_scores_gemma":[0.007315385,0.0051152194,0.0024878953,0.031382095,0.44647557,0.00063744735,0.0037428562,0.0037095663,0.49913394],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.988398,0.0014112749,0.00066846365,0.0014631924,0.006290757,0.0017683957],"domain_scores_gemma":[0.9632262,0.0064915004,0.0023544943,0.0030983218,0.011333574,0.013495847],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.008548424,0.0027873684,0.0020698968,0.005451614,0.005813882,0.031139128,0.0043360656,0.010197463,0.55647343],"category_scores_gemma":[0.04091477,0.0011095115,0.0020373042,0.0033254214,0.0021557566,0.013603434,0.009680373,0.008635046,0.31931484],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033736716,0.000031578005,0.000055698456,0.000140954,0.000005280985,0.00007344103,0.000027489845,0.00003304266,0.00012634239,0.002484986,0.9794917,0.017495781],"study_design_scores_gemma":[0.000019951282,0.000028917286,0.00013547645,0.00009122501,0.0000037154102,0.000081936014,0.000033851935,0.00006323426,0.00010421274,0.0013769896,0.9980496,0.0000107786345],"about_ca_topic_score_codex":0.0003740407,"about_ca_topic_score_gemma":0.00064853264,"teacher_disagreement_score":0.55647343,"about_ca_system_score_codex":0.0044071665,"about_ca_system_score_gemma":0.0057854005,"threshold_uncertainty_score":0.6326368},"labels":[],"label_agreement":null},{"id":"W3028033094","doi":"10.1074/mcp.ra119.001897","title":"Identification of Lysine Acetylation Sites on MERS-CoV Replicase pp1ab","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Sirtuins and Resveratrol in Medicine","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Research Grants Council, University Grants Committee; National Natural Science Foundation of China","keywords":"Acetylation; Biology; Viral replication; Computational biology; Genetics; Virology; Virus; Gene","score_opus":0.02042970960639335,"score_gpt":0.26692872894859565,"score_spread":0.2464990193422023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3028033094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99091876,0.0031417024,0.0032420661,0.000073647236,0.000053464308,0.000034263947,0.0016094921,0.000053824362,0.00087269343],"genre_scores_gemma":[0.98289263,0.0017782256,0.0077473996,0.00010683145,0.000031966316,0.000030403176,0.004778318,0.00004127527,0.0025929646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987257,0.000011467742,0.00000951188,0.000036254234,0.000044794826,0.000025355532],"domain_scores_gemma":[0.9998217,0.00002376744,0.00005069212,0.000014560412,0.00004274363,0.00004652263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015857148,0.00050488353,0.00040712577,0.00047219143,0.00024917242,0.0002288047,0.00016917185,0.0002873065,0.0015062153],"category_scores_gemma":[0.00028696514,0.000186485,0.00067756546,0.00045469482,0.00013076169,0.00023082165,0.00018548183,0.00041916934,0.00065615366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037472305,0.00002888916,0.004705128,0.00014083099,0.000034308756,0.00045389278,0.000057883684,0.00010410373,0.99164796,0.000053535954,0.00013955192,0.0022592293],"study_design_scores_gemma":[0.0000510193,0.0006667539,0.25853217,0.00005759018,0.0001946414,0.004073178,0.0002620773,0.0054496154,0.7213701,0.00024175372,0.009040183,0.00006101594],"about_ca_topic_score_codex":0.0008471269,"about_ca_topic_score_gemma":0.0010308134,"teacher_disagreement_score":0.0015062153,"about_ca_system_score_codex":0.00021322945,"about_ca_system_score_gemma":0.00016490687,"threshold_uncertainty_score":0.005038798},"labels":[],"label_agreement":null},{"id":"W3028228569","doi":"10.1074/mcp.ra119.001769","title":"Dynamic Transcriptomic and Phosphoproteomic Analysis During Cell Wall Stress in Aspergillus nidulans","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of General Medical Sciences; National Science Foundation; National Cancer Institute; Center for Root and Rhizobiome Innovation, University of Nebraska-Lincoln; Fred and Pamela Buffett Cancer Center; National Rice Research Institute, Indian Council of Agricultural Research","keywords":"Aspergillus nidulans; Cell biology; Biology; Phosphoproteomics; Phosphorylation; Transcriptome; Signal transduction; Hippo signaling pathway; Kinase; Cellular stress response; Biochemistry; Protein phosphorylation; Mutant; Protein kinase A; Gene expression; Gene; Fight-or-flight response","score_opus":0.004730529345952274,"score_gpt":0.204726085419998,"score_spread":0.19999555607404573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3028228569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882506,0.00090279785,0.004245844,0.00006351058,0.000020028569,0.00004731793,0.0058310363,0.000072800176,0.0005660556],"genre_scores_gemma":[0.9827632,0.0010349863,0.0087698735,0.00008601438,0.000011355496,0.00013091796,0.0054325475,0.000026746986,0.0017444154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999899,0.000009409394,0.000007918941,0.000029715424,0.00003992353,0.000014031312],"domain_scores_gemma":[0.9999225,0.000019534027,0.000017383702,0.000008929437,0.000016837104,0.000014857728],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014352375,0.00024177966,0.00037909695,0.00030767062,0.0001768979,0.00028919836,0.00017737233,0.00017144039,0.00023700985],"category_scores_gemma":[0.000109007975,0.000101680525,0.00025538015,0.0004877792,0.00013547066,0.00016972118,0.00017436234,0.00029117733,0.00015921434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008139087,0.0000110107085,0.0005090703,0.0000210504,0.00000519698,0.000026754582,0.000010746182,0.00010630091,0.9983553,0.000016793345,0.00001793272,0.0008383782],"study_design_scores_gemma":[0.0000143253355,0.0003976582,0.13338937,0.000012830058,0.000057033874,0.00034479378,0.00021184773,0.008173092,0.8558951,0.00017420803,0.0012953879,0.000034398432],"about_ca_topic_score_codex":0.0021413616,"about_ca_topic_score_gemma":0.0025373816,"teacher_disagreement_score":0.0021413616,"about_ca_system_score_codex":0.00024139429,"about_ca_system_score_gemma":0.00018408432,"threshold_uncertainty_score":0.004257798},"labels":[],"label_agreement":null},{"id":"W3032556878","doi":"10.1074/mcp.ra120.002082","title":"The Mouse Heart Mitochondria N Terminome Provides Insights into ClpXP-Mediated Proteolysis","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Universität zu Köln; Deutsche Forschungsgemeinschaft","keywords":"Proteostasis; Mitochondrion; Protease; Biology; Proteolysis; Proteome; Proteomics; Biochemistry; Isobaric labeling; Stable isotope labeling by amino acids in cell culture; Cell biology; Quantitative proteomics; Enzyme","score_opus":0.00840286462571907,"score_gpt":0.20973752469558454,"score_spread":0.20133466006986547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3032556878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98500603,0.0012841686,0.011013215,0.00012201573,0.000019963742,0.000027831948,0.0012918328,0.00013330369,0.0011016235],"genre_scores_gemma":[0.98104537,0.0009922248,0.011016874,0.00013411113,0.000012548698,0.0000523276,0.002340082,0.000095453215,0.0043109506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987245,0.000013119536,0.000012234304,0.00004894347,0.000030470077,0.000022632861],"domain_scores_gemma":[0.99982846,0.000026431639,0.00006128614,0.000019550676,0.00001640946,0.00004777783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017199774,0.00042124832,0.0001751754,0.0006013663,0.00017363104,0.00027956493,0.00021030997,0.0003228499,0.0012143384],"category_scores_gemma":[0.000109549626,0.00020447436,0.00031985765,0.00017073417,0.00022357151,0.00023102554,0.00021418856,0.00048293464,0.00045964055],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006248015,0.0000058367204,0.00024984815,0.000010975719,0.000002967617,0.0000692865,0.0000062007316,0.000016966762,0.99914455,0.000042225896,0.000011043125,0.00037759836],"study_design_scores_gemma":[0.000012713736,0.00012448104,0.014955273,0.000008124168,0.00002091217,0.0011815022,0.00002555307,0.00085911126,0.9808806,0.00013364,0.00179275,0.000005212247],"about_ca_topic_score_codex":0.00034379947,"about_ca_topic_score_gemma":0.00061449216,"teacher_disagreement_score":0.0012143384,"about_ca_system_score_codex":0.00022340231,"about_ca_system_score_gemma":0.000118768265,"threshold_uncertainty_score":0.004062295},"labels":[],"label_agreement":null},{"id":"W3038111896","doi":"10.1074/mcp.r120.002051","title":"Proteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface","year":2020,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dello Sviluppo Economico; Government of Canada; Genome Canada; Ontario Genomics; Ontario Ministry of Economic Development and Innovation; Ontario Genomics Institute","keywords":"Metaproteomics; Proteomics; Microbiome; Metagenomics; Computational biology; Computer science; Energy flow; Ecosystem; Ecology; Biology; Biochemical engineering; Bioinformatics; Energy (signal processing); Engineering","score_opus":0.031873231779224666,"score_gpt":0.2689781381810543,"score_spread":0.23710490640182966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3038111896","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019531228,0.99431324,0.0028122342,0.000613767,0.00047614006,0.000008199148,0.0000479022,0.000026763819,0.001506448],"genre_scores_gemma":[0.0011535373,0.9947714,0.0028154328,0.0003286493,0.00034983252,0.000015081722,0.000056785153,0.000008444651,0.0005007794],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99954396,0.00011088638,0.000042440963,0.00009569273,0.00017385169,0.000033174165],"domain_scores_gemma":[0.998613,0.00086251844,0.00011222739,0.000061299375,0.00026357255,0.00008737343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001635237,0.0017507876,0.0024932695,0.003202517,0.00030510768,0.0020597284,0.0012057981,0.0019631428,0.0023683503],"category_scores_gemma":[0.0015570772,0.00065301004,0.0012351155,0.0031876597,0.0009905734,0.0028260187,0.0013251189,0.0037903553,0.001905379],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052232208,0.000060933755,0.00051055837,0.024004802,0.0004120502,0.00020755774,0.00007385638,0.0023348976,0.006166999,0.025670627,0.015970083,0.92453545],"study_design_scores_gemma":[0.000012400399,0.0001203896,0.0012669063,0.0034631048,0.00036035737,0.00084727415,0.000106417465,0.0010572792,0.0024007785,0.019459443,0.9708329,0.000072690375],"about_ca_topic_score_codex":0.0010834525,"about_ca_topic_score_gemma":0.0017367996,"teacher_disagreement_score":0.003202517,"about_ca_system_score_codex":0.00096159027,"about_ca_system_score_gemma":0.0015208125,"threshold_uncertainty_score":0.0086480975},"labels":[],"label_agreement":null},{"id":"W3085729177","doi":"10.1074/mcp.ra120.002316","title":"A Novel Mechanism for NF-κB-activation via IκB-aggregation: Implications for Hepatic Mallory-Denk-Body Induced Inflammation","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; Dr. Miriam and Sheldon G. Adelson Medical Research Foundation; University of California, San Francisco; National Institutes of Health; Government of Canada; Canadian Institutes of Health Research","keywords":"Chemistry; Aggresome; IκBα; Cell biology; Inflammation; Nuclear pore; Ubiquitin; Nucleophosmin; Cathepsin B; NF-κB; Biochemistry; Cytoplasm; Biology; Enzyme; Signal transduction","score_opus":0.02690716151621912,"score_gpt":0.24811499315962388,"score_spread":0.22120783164340477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3085729177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9470482,0.011731026,0.037475485,0.0010018739,0.00010754368,0.00008004141,0.00037768955,0.00018582554,0.0019923048],"genre_scores_gemma":[0.98500156,0.0030830253,0.009644559,0.0001628621,0.000030784613,0.000034706107,0.00018840136,0.000009687279,0.0018443976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998871,0.000015045184,0.00001232951,0.00003463081,0.000022393242,0.00002846038],"domain_scores_gemma":[0.99990845,0.000009785537,0.000034911624,0.000011913286,0.000011986781,0.000022930108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025523192,0.0004625903,0.00031001584,0.00023433079,0.00029876002,0.0004965762,0.00024079502,0.0003840978,0.0005928006],"category_scores_gemma":[0.00009227116,0.00011997986,0.00031487714,0.00015531479,0.00048949,0.0006945715,0.00030352012,0.00061332394,0.00019010456],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008870198,0.000023573497,0.00039927044,0.000066449094,0.0000065017816,0.0002220835,0.000023383043,0.00007105781,0.9976591,0.00062949734,0.000025406125,0.00078502373],"study_design_scores_gemma":[0.000023540391,0.00025803773,0.011092902,0.000014884589,0.000029043287,0.0016477957,0.00010970212,0.0018283845,0.9809153,0.0012883727,0.0027737464,0.000018367995],"about_ca_topic_score_codex":0.00030770316,"about_ca_topic_score_gemma":0.000502885,"teacher_disagreement_score":0.0005928006,"about_ca_system_score_codex":0.0005494561,"about_ca_system_score_gemma":0.00025588684,"threshold_uncertainty_score":0.0039865375},"labels":[],"label_agreement":null},{"id":"W3090995810","doi":"10.1074/mcp.ra120.002345","title":"Mutation-independent Proteomic Signatures of Pathological Progression in Murine Models of Duchenne Muscular Dystrophy","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Stockholms Läns Landsting; Women and Children's Health Research Institute; Cancerfonden; Muscular Dystrophy Canada; Muscular Dystrophy UK; Japan Society for the Promotion of Science London","keywords":"Duchenne muscular dystrophy; Pathological; Dystrophin; Muscular dystrophy; Mutation; Medicine; Biology; Pathology; Genetics; Internal medicine; Gene","score_opus":0.009417305096866328,"score_gpt":0.22833763234798302,"score_spread":0.21892032725111668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3090995810","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958683,0.0013631455,0.0013099844,0.000044989036,0.000015014196,0.000022920325,0.0006704827,0.00005224611,0.0006530897],"genre_scores_gemma":[0.993397,0.000996943,0.0016185764,0.000052062158,0.0000070256237,0.0000672847,0.0009445819,0.000023253324,0.002893243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999858,0.00002353721,0.000015878617,0.00004201535,0.000035315577,0.000025233083],"domain_scores_gemma":[0.99985313,0.000010013926,0.00006169357,0.000011793765,0.000020798507,0.00004250396],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015306725,0.0003576976,0.00021918882,0.0007511943,0.00014433182,0.000227232,0.00010970456,0.000296251,0.00074182433],"category_scores_gemma":[0.0000988874,0.00020687132,0.0001835205,0.00024517515,0.0002063296,0.00015686415,0.00019928876,0.00031508316,0.00021916417],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028696127,0.00002204513,0.0008060264,0.000029696213,0.000010135727,0.000108262684,0.000018202474,0.000035388803,0.9978194,0.000032135853,0.00003142123,0.00080045126],"study_design_scores_gemma":[0.000043641816,0.0010951005,0.2163449,0.00003226787,0.00010619045,0.0030820111,0.00015032516,0.0015507637,0.7747367,0.00020162092,0.0026366701,0.000019766305],"about_ca_topic_score_codex":0.0003984278,"about_ca_topic_score_gemma":0.0007953645,"teacher_disagreement_score":0.0007511943,"about_ca_system_score_codex":0.00022666182,"about_ca_system_score_gemma":0.00010433046,"threshold_uncertainty_score":0.0024815798},"labels":[],"label_agreement":null},{"id":"W3095905314","doi":"10.1074/mcp.ra120.002275","title":"On the Robustness of Graph-Based Clustering to Random Network Alterations","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Michael Smith Health Research BC; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Genome Canada","keywords":"Cluster analysis; Robustness (evolution); Computer science; Pairwise comparison; Biological network; Graph; Network analysis; Clustering coefficient; Data mining; Computational biology; Theoretical computer science; Biology; Artificial intelligence; Genetics; Gene; Physics","score_opus":0.009868083444179611,"score_gpt":0.2002031557574816,"score_spread":0.190335072313302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3095905314","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.54981524,0.0017019813,0.4412085,0.0011420429,0.00015290671,0.00026053083,0.0010879153,0.0023670201,0.0022638645],"genre_scores_gemma":[0.93613255,0.00044068563,0.060520057,0.00029047235,0.000078180696,0.00015521568,0.0015147291,0.0004641476,0.00040390732],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99277323,0.0034795166,0.0004759899,0.001843649,0.0011245913,0.0003031044],"domain_scores_gemma":[0.89313084,0.07593365,0.01151247,0.01418046,0.004047753,0.0011948674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.015228523,0.0013730491,0.0011968348,0.0038918233,0.0013876938,0.002073565,0.0016542912,0.0017372642,0.000676495],"category_scores_gemma":[0.094480515,0.0006305679,0.0017938039,0.0018014713,0.0038362863,0.0027058085,0.0019511759,0.0021017871,0.00032587236],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005040122,0.00008525443,0.022812258,0.0003317849,0.0009023085,0.00016717355,0.00035790092,0.93410724,0.0113164,0.007841688,0.00085946533,0.020714553],"study_design_scores_gemma":[0.000031399628,0.00018692756,0.009073861,0.00005825831,0.00014153443,0.00019782009,0.0000864555,0.9639071,0.0076676304,0.017910287,0.0006647039,0.00007405658],"about_ca_topic_score_codex":0.0042908923,"about_ca_topic_score_gemma":0.0023126525,"teacher_disagreement_score":0.015228523,"about_ca_system_score_codex":0.00186873,"about_ca_system_score_gemma":0.0008253519,"threshold_uncertainty_score":0.08053708},"labels":[],"label_agreement":null},{"id":"W3129723121","doi":"10.1016/j.mcpro.2021.100064","title":"Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Estrogen and related hormone effects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Hôtel-Dieu de Québec; Centre hospitalier de l'Université Laval; PROTEO; Centre hospitalier universitaire de Québec","funders":"Fonds de Recherche du Québec - Santé; Canada Research Chairs; Canada Foundation for Innovation; Canadian Institutes of Health Research; Canadian Urological Oncology Group","keywords":"Androgen receptor; KLF4; Biology; Transcription factor; Prostate cancer; Androgen; Cancer research; Cell biology; Endocrinology; Gene; Cancer; Genetics; SOX2; Hormone","score_opus":0.009784603562283643,"score_gpt":0.21314557745704948,"score_spread":0.20336097389476585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3129723121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9818564,0.0022830472,0.012765284,0.00008570847,0.000015817002,0.000021097356,0.0013536189,0.00016723436,0.0014517088],"genre_scores_gemma":[0.9760735,0.0010376911,0.017248338,0.000077843986,0.000010312776,0.000023582415,0.003431032,0.00003823853,0.0020595116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998814,0.000013481556,0.000005356653,0.00004714082,0.000032403794,0.00002017566],"domain_scores_gemma":[0.99992085,0.000012827015,0.000030299914,0.000008164644,0.000010070439,0.000017925982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010223909,0.00029032413,0.00021247975,0.00054926006,0.00026440038,0.00028549615,0.00023592966,0.00022565009,0.0012209731],"category_scores_gemma":[0.0001663359,0.00017149695,0.00036491605,0.00035386172,0.00012963639,0.00023379318,0.0003038922,0.00026581687,0.00076072646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009212061,0.0000072789803,0.0012463323,0.000043298034,0.000012551094,0.000060385657,0.00001321769,0.00016637356,0.99609286,0.00013425946,0.000076889904,0.0020544],"study_design_scores_gemma":[0.00002330826,0.00017430006,0.06583174,0.000015042185,0.00007987408,0.0011285535,0.000097432145,0.012565988,0.90878713,0.00048837654,0.010779815,0.000028462386],"about_ca_topic_score_codex":0.0010601191,"about_ca_topic_score_gemma":0.0016469182,"teacher_disagreement_score":0.0012209731,"about_ca_system_score_codex":0.00037427808,"about_ca_system_score_gemma":0.00017556001,"threshold_uncertainty_score":0.0040845275},"labels":[],"label_agreement":null},{"id":"W3136190116","doi":"10.1016/j.mcpro.2021.100075","title":"Mapping Isoform Abundance and Interactome of the Endogenous TMPRSS2-ERG Fusion Protein by Orthogonal Immunoprecipitation–Mass Spectrometry Assays","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary; University of Alberta","funders":"China Scholarship Council; Mitacs; National Natural Science Foundation of China; Prostate Cancer Canada","keywords":"Interactome; TMPRSS2; Fusion protein; Gene isoform; Prostate cancer; Erg; Molecular biology; Biology; Immunoprecipitation; Fusion gene; Computational biology; Chemistry; Cancer research; Gene; Cancer; Genetics; Biochemistry; Recombinant DNA; Medicine; Internal medicine","score_opus":0.012692227595657057,"score_gpt":0.23583496777187876,"score_spread":0.2231427401762217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3136190116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9731653,0.0013224118,0.021741213,0.00009400817,0.00001762923,0.000053459113,0.0016885587,0.00024169477,0.0016756268],"genre_scores_gemma":[0.95988315,0.0015966682,0.030506067,0.00013164865,0.000026067091,0.00016595227,0.0038400611,0.0001143033,0.0037360634],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99969685,0.000038995466,0.000023200424,0.000089403096,0.00010133819,0.000050209164],"domain_scores_gemma":[0.9998604,0.000036312686,0.000038723207,0.000014508068,0.000031434618,0.000018542993],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032606907,0.00042179256,0.00027375744,0.0008727687,0.00026205412,0.00043460628,0.00024917908,0.00021805716,0.00097537827],"category_scores_gemma":[0.00022893302,0.00019075879,0.0002737154,0.00055454037,0.00025027504,0.00018228334,0.00031402844,0.00034030635,0.00040642428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006376711,0.000012368787,0.00094436825,0.00002862299,0.000011384473,0.00002888977,0.000016518985,0.000044431108,0.9978733,0.00006860335,0.000035747427,0.0008719734],"study_design_scores_gemma":[0.000010269358,0.00010792995,0.043587904,0.000006068689,0.000051262246,0.0005433731,0.00007320316,0.004679827,0.9481321,0.00010636908,0.0026895304,0.000012145071],"about_ca_topic_score_codex":0.0007738549,"about_ca_topic_score_gemma":0.0012304983,"teacher_disagreement_score":0.00097537827,"about_ca_system_score_codex":0.00031933386,"about_ca_system_score_gemma":0.00020478574,"threshold_uncertainty_score":0.003262937},"labels":[],"label_agreement":null},{"id":"W3159938378","doi":"10.1016/j.mcpro.2021.100088","title":"TMEM67, TMEM237, and Embigin in Complex With Monocarboxylate Transporter MCT1 Are Unique Components of the Photoreceptor Outer Segment Plasma Membrane","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Institute of Genetics; National Eye Institute; Canadian Institutes of Health Research; National Institutes of Health; Research to Prevent Blindness","keywords":"Transporter; Chemistry; Membrane; Monocarboxylate transporter; Cell biology; Biochemistry; Biology; Gene","score_opus":0.008629056990709956,"score_gpt":0.18926620589978704,"score_spread":0.1806371489090771,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159938378","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952909,0.0016743405,0.0020070293,0.0001283722,0.000022305596,0.000009775095,0.0003368801,0.00003700026,0.00049341255],"genre_scores_gemma":[0.98901576,0.0010684048,0.0047260323,0.00014781694,0.000011653346,0.000016672488,0.0015790412,0.00003383191,0.003400771],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991167,0.0000058844043,0.00000540745,0.000030797015,0.000022783199,0.000023548037],"domain_scores_gemma":[0.99994457,0.00000618198,0.000021672244,0.0000039035394,0.000007773383,0.000015911084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000105881336,0.0003200312,0.00019795494,0.00025817004,0.00021833427,0.0002467007,0.00020114738,0.0003273355,0.000701401],"category_scores_gemma":[0.00014864744,0.00013461987,0.00022790224,0.00019334475,0.00014433499,0.00021138733,0.00022833484,0.00031197272,0.00032869205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009834584,0.00000633824,0.0015808027,0.00004469189,0.000010186902,0.0002466317,0.00002750204,0.000018304992,0.997047,0.00004439182,0.00004310772,0.00083273504],"study_design_scores_gemma":[0.000018567334,0.00009724247,0.11506236,0.00002166762,0.000060338065,0.0030628918,0.0002220411,0.0017719264,0.87407345,0.00014457214,0.0054518203,0.000013142878],"about_ca_topic_score_codex":0.0011084271,"about_ca_topic_score_gemma":0.0020275668,"teacher_disagreement_score":0.0011084271,"about_ca_system_score_codex":0.000333652,"about_ca_system_score_gemma":0.00015427156,"threshold_uncertainty_score":0.0024208426},"labels":[],"label_agreement":null},{"id":"W3165520564","doi":"10.1016/j.mcpro.2021.100101","title":"Normothermic Ex-vivo Kidney Perfusion in a Porcine Auto-Transplantation Model Preserves the Expression of Key Mitochondrial Proteins: An Unbiased Proteomics Analysis","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Organ Transplantation Techniques and Outcomes","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Toronto Rehabilitation Institute; Western University; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Toronto Western Hospital; Toronto General Hospital; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; Kidney Foundation of Canada; Krembil Foundation; Canada Foundation for Innovation; Ontario Research Foundation; Natural Sciences and Engineering Research Council of Canada; International Business Machines Corporation","keywords":"Biology; Transcription factor; Ex vivo; Kidney; Transplantation; Peroxisome proliferator-activated receptor; Cell biology; Receptor; In vivo; Medicine; Biochemistry; Internal medicine; Endocrinology; Gene; Genetics","score_opus":0.01032438060477818,"score_gpt":0.25020271201318595,"score_spread":0.23987833140840775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3165520564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98686975,0.00074512966,0.010287772,0.00005190983,0.000025908359,0.0000488643,0.0015106162,0.000073322386,0.00038670257],"genre_scores_gemma":[0.97473764,0.0013904759,0.015838392,0.00021001307,0.00002769431,0.0002092394,0.0064727617,0.00007722936,0.0010365716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997727,0.00002237322,0.000017694085,0.00008025816,0.00007286163,0.000034247238],"domain_scores_gemma":[0.99979824,0.00003259185,0.0000616369,0.000031345277,0.00005246534,0.00002377452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043941397,0.00026774794,0.00039602173,0.0003301354,0.00023469659,0.0003803188,0.00016212062,0.00025170582,0.0004992164],"category_scores_gemma":[0.00029041074,0.00014766166,0.00035273828,0.00034113874,0.0002565122,0.00026270628,0.00024992236,0.00032285112,0.00015859341],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018343219,0.00001856124,0.0019152967,0.00004895662,0.000021875907,0.000053514235,0.000020304158,0.00009632433,0.99621433,0.000019054774,0.00004102969,0.0013672515],"study_design_scores_gemma":[0.000026224852,0.0009045762,0.21549103,0.00002504933,0.00022362005,0.0011815273,0.00013049055,0.003708529,0.77442837,0.00019185113,0.0036527365,0.000035996436],"about_ca_topic_score_codex":0.00039439622,"about_ca_topic_score_gemma":0.0007677477,"teacher_disagreement_score":0.0004992164,"about_ca_system_score_codex":0.00015402287,"about_ca_system_score_gemma":0.00021043494,"threshold_uncertainty_score":0.0023239255},"labels":[],"label_agreement":null},{"id":"W3171360477","doi":"10.1016/j.mcpro.2021.100096","title":"Proteomic Portraits Reveal Evolutionarily Conserved and Divergent Responses to Spinal Cord Injury","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Spinal Cord Injury Research","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Prevention of Organ Failure; University of Victoria; Université de Montréal; London Health Sciences Centre; Centre Hospitalier Universitaire Sainte-Justine; Dalhousie University; University of British Columbia; International Collaboration On Repair Discoveries; St. Michael's Hospital; Canada's Michael Smith Genome Sciences Centre; University of Toronto; Western University; Hôpital du Sacré-Cœur de Montréal; Vancouver Spine Surgery Institute","funders":"University of British Columbia; Genome British Columbia; Michael Smith Health Research BC; Western Canada Research Grid; Rick Hansen Institute; Fondation Brain Canada; VGH and UBC Hospital Foundation; Compute Canada; Canadian Institutes of Health Research; Genome Canada; Wings for Life","keywords":"Spinal cord injury; Medicine; Cerebrospinal fluid; Glial fibrillary acidic protein; Spinal cord; Clinical trial; Biomarker; Neuroscience; Bioinformatics; Biology; Pathology","score_opus":0.03513812845756462,"score_gpt":0.3373143581185436,"score_spread":0.30217622966097896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3171360477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948725,0.0009369797,0.0026042424,0.0001567707,0.000016666227,0.000014146157,0.00040280534,0.000019911911,0.000975782],"genre_scores_gemma":[0.9954733,0.0009573427,0.0019027878,0.00023132689,0.000021293878,0.000022885291,0.0008329094,0.00001583124,0.0005423532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99977833,0.000040372808,0.00001753878,0.000078836834,0.000042773823,0.000042112082],"domain_scores_gemma":[0.999713,0.000044623703,0.00012376551,0.000030364048,0.000043220552,0.000044868902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005090718,0.00031512277,0.00033632122,0.0009151559,0.0002776818,0.0006280381,0.00013987956,0.00040925777,0.0005159095],"category_scores_gemma":[0.00062088633,0.00013477386,0.00028832702,0.0004953723,0.00042745456,0.00043648187,0.000487895,0.0004484607,0.0002698944],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000746266,0.000057084253,0.08721154,0.00012706772,0.00018054555,0.00050480996,0.00045288642,0.00027263776,0.8963605,0.00029610837,0.0002575558,0.01353285],"study_design_scores_gemma":[0.0000073617357,0.0006638602,0.95039517,0.000029274403,0.00008791561,0.0027532987,0.00061207433,0.0011724922,0.041264657,0.00059092266,0.0024007896,0.000022310887],"about_ca_topic_score_codex":0.0003123882,"about_ca_topic_score_gemma":0.0004104817,"teacher_disagreement_score":0.0009151559,"about_ca_system_score_codex":0.00016441858,"about_ca_system_score_gemma":0.00016940542,"threshold_uncertainty_score":0.0026922226},"labels":[],"label_agreement":null},{"id":"W3184523677","doi":"10.1016/j.mcpro.2021.100125","title":"Affinity Proteomics and Deglycoproteomics Uncover Novel EDEM2 Endogenous Substrates and an Integrative ERAD Network","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii; Academia Româna; Ontario Ministry of Research, Innovation and Science","keywords":"Endoplasmic-reticulum-associated protein degradation; Proteome; Proteomics; Endoplasmic reticulum; Biology; Shotgun proteomics; Glycobiology; Stable isotope labeling by amino acids in cell culture; Quantitative proteomics; Glycoprotein; Cell biology; Protein degradation; Computational biology; Unfolded protein response; Biochemistry; Glycan","score_opus":0.012462797899197907,"score_gpt":0.217459088042615,"score_spread":0.20499629014341708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3184523677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9763558,0.0016853968,0.012638156,0.0001449564,0.00002169287,0.000035984907,0.0074264435,0.00037603916,0.0013156186],"genre_scores_gemma":[0.9143667,0.001901683,0.045145463,0.00026748824,0.000021646296,0.00007130016,0.0346566,0.00017449801,0.0033945667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980885,0.000014784269,0.000011194715,0.0000811679,0.000049754974,0.0000342669],"domain_scores_gemma":[0.99988675,0.000014891611,0.000031658525,0.000019320438,0.000023042196,0.000024320612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002790393,0.00060092716,0.0004088053,0.00071089424,0.00028940634,0.00064478867,0.00020134388,0.000404219,0.00095437525],"category_scores_gemma":[0.0002554247,0.00017618433,0.00058923516,0.0007741554,0.00017670082,0.00048132197,0.00046603061,0.0005917831,0.00048516784],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045532433,0.00006777849,0.013232074,0.00022584903,0.00007523746,0.00035217166,0.000069797024,0.0009761819,0.9738998,0.00037096292,0.0008301025,0.009444716],"study_design_scores_gemma":[0.000053414962,0.00027112637,0.20287204,0.000058538662,0.00022735471,0.0020533511,0.00023376265,0.03240631,0.7349331,0.0013583915,0.025482142,0.00005043529],"about_ca_topic_score_codex":0.0008952974,"about_ca_topic_score_gemma":0.0015562196,"teacher_disagreement_score":0.00095437525,"about_ca_system_score_codex":0.00033328417,"about_ca_system_score_gemma":0.00024144517,"threshold_uncertainty_score":0.0031927228},"labels":[],"label_agreement":null},{"id":"W3186646343","doi":"10.1016/j.mcpro.2021.100128","title":"A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Lunenfeld-Tanenbaum Research Institute; University of Toronto; SickKids Foundation; Mount Sinai Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation; Genome Canada; Ontario Genomics; Canadian Institutes of Health Research; Government of Ontario","keywords":"Zebrafish; Biotinylation; Model organism; Biology; Protein subcellular localization prediction; Lamin; Cell biology; Computational biology; LMNA; Green fluorescent protein; Proteomics; Interactome; Transgene; Electroporation; Molecular biology; Gene; Genetics; Nucleus","score_opus":0.007595485109621408,"score_gpt":0.22397701601802486,"score_spread":0.21638153090840345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3186646343","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.26568034,0.0020118593,0.70186025,0.00073117856,0.0002633865,0.0013708082,0.005938989,0.012783164,0.009360004],"genre_scores_gemma":[0.35483953,0.0028520538,0.6126701,0.00025896117,0.00003511088,0.0025710955,0.0044589043,0.002577004,0.019737186],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996044,0.000050645693,0.000044611068,0.00009469334,0.00015297132,0.000052730928],"domain_scores_gemma":[0.99970585,0.000061696126,0.00007005383,0.00006715938,0.00004072218,0.000054416847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000724736,0.0009365001,0.00046235273,0.00087573845,0.00058980804,0.000480105,0.0010829153,0.00079829583,0.00450853],"category_scores_gemma":[0.00046506943,0.0009119609,0.000613838,0.00023743644,0.0005853926,0.0005766524,0.001030704,0.0013049658,0.0024908765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002266988,0.00000602521,0.000046326004,0.000037661193,0.0000037338277,0.000046906196,0.000021899014,0.00014705591,0.99689,0.00040825107,0.00012649114,0.002243074],"study_design_scores_gemma":[0.00003166542,0.00010291935,0.00091560197,0.000028590628,0.00001560199,0.00027720202,0.000015689579,0.00217618,0.9822021,0.00022396412,0.013987349,0.000023313127],"about_ca_topic_score_codex":0.0026281092,"about_ca_topic_score_gemma":0.00582339,"teacher_disagreement_score":0.00450853,"about_ca_system_score_codex":0.0008468799,"about_ca_system_score_gemma":0.00078977796,"threshold_uncertainty_score":0.015082538},"labels":[],"label_agreement":null},{"id":"W3188330609","doi":"10.1016/j.mcpro.2021.100132","title":"Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Cancer Institute; National Institutes of Health; Korea Advanced Institute of Science and Technology; National Research Foundation of Korea; National Research Foundation; F. Hoffmann-La Roche","keywords":"APOBEC3G; Computational biology; Mutagenesis; Protein structure; Biology; Chemistry; Cytidine deaminase; Genetics; Biochemistry; Mutant; Gene","score_opus":0.01715909090862251,"score_gpt":0.27657867529627955,"score_spread":0.25941958438765705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3188330609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85356987,0.0002020358,0.14096282,0.000107030995,0.00001820635,0.000116482806,0.0012690709,0.001733041,0.0020214121],"genre_scores_gemma":[0.8655412,0.00033413223,0.12976891,0.000051971674,0.0000051331003,0.00015318506,0.0028657822,0.00046995573,0.0008097318],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.999884,0.000010978952,0.0000049024266,0.000040289993,0.000041965104,0.000017819271],"domain_scores_gemma":[0.99987006,0.000029320383,0.0000255684,0.000024231213,0.000028359378,0.0000223748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003110126,0.0009028031,0.00045842517,0.00030073072,0.0004730753,0.00055337435,0.0008164587,0.0005355786,0.0013317923],"category_scores_gemma":[0.00041101934,0.00043276348,0.0005875477,0.00027999413,0.00018337251,0.00045204733,0.0003357108,0.0009106979,0.0004403065],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024677723,0.00030615024,0.0067753587,0.00013862817,0.00016886652,0.0005234053,0.00026568916,0.3296535,0.64377785,0.003754494,0.0006438367,0.013745508],"study_design_scores_gemma":[0.000051328567,0.00018394444,0.0026833261,0.000012508125,0.000041820942,0.00018943411,0.000087724904,0.8374419,0.15572351,0.0010577708,0.0025051276,0.000021526921],"about_ca_topic_score_codex":0.004745747,"about_ca_topic_score_gemma":0.0047332007,"teacher_disagreement_score":0.004745747,"about_ca_system_score_codex":0.0010935372,"about_ca_system_score_gemma":0.0010065377,"threshold_uncertainty_score":0.00943625},"labels":[],"label_agreement":null},{"id":"W3194823173","doi":"10.1016/j.mcpro.2021.100139","title":"IMProv: A Resource for Cross-link-Driven Structure Modeling that Accommodates Protein Dynamics","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Canarie; National Institutes of Health; Pfizer","keywords":"Link (geometry); Dynamics (music); Computer science; Resource (disambiguation); Computational biology; Chemistry; Computer network; Biology; Physics","score_opus":0.008096473066985887,"score_gpt":0.23688934506095558,"score_spread":0.2287928719939697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3194823173","genre_codex":"software","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014645197,0.0013439017,0.44614068,0.00085534627,0.0004609132,0.0004230243,0.059250068,0.4539391,0.02294178],"genre_scores_gemma":[0.10876403,0.002839387,0.44613767,0.0013470859,0.0002422278,0.0025052056,0.1990002,0.22039315,0.01877103],"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99916387,0.00013208005,0.000057929105,0.00017842247,0.00035857363,0.00010928798],"domain_scores_gemma":[0.9987753,0.0005261599,0.00008920014,0.00029384764,0.00017739278,0.00013804919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022434474,0.0024479565,0.0020923943,0.0010416782,0.0013368153,0.002474137,0.008242356,0.0018909987,0.047152955],"category_scores_gemma":[0.004128883,0.0020624588,0.002554928,0.0012113445,0.00068386557,0.0030905865,0.0041087586,0.004039643,0.022539143],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001329159,0.0005068529,0.00610045,0.003347135,0.0012619029,0.0014428023,0.0010068523,0.06525523,0.028997304,0.043861322,0.73557913,0.11131193],"study_design_scores_gemma":[0.00090424553,0.00022443847,0.002413591,0.0004068463,0.00026837506,0.0011072125,0.00017657552,0.453591,0.034332782,0.040740833,0.4654689,0.00036512024],"about_ca_topic_score_codex":0.003862061,"about_ca_topic_score_gemma":0.0055630356,"teacher_disagreement_score":0.047152955,"about_ca_system_score_codex":0.0011336651,"about_ca_system_score_gemma":0.0031900653,"threshold_uncertainty_score":0.15774238},"labels":[],"label_agreement":null},{"id":"W3202993612","doi":"10.1016/j.mcpro.2021.100160","title":"Integrated Systems Analysis of the Murine and Human Pancreatic Cancer Glycomes Reveals a Tumor-Promoting Role for ST6GAL1","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"DOD Peer Reviewed Cancer Research Program; National Cancer Institute; National Institutes of Health; Canada Excellence Research Chairs, Government of Canada","keywords":"Sialyltransferase; Pancreatic cancer; Biology; Cancer; Sialic acid; Cancer research; Glycan; PTEN; Glycomics; Pancreas; Biochemistry; Glycoprotein; Genetics; Apoptosis","score_opus":0.010641974314841726,"score_gpt":0.2658899406230548,"score_spread":0.2552479663082131,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202993612","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9832359,0.0005429931,0.014085545,0.000085743966,0.000019091438,0.00003986799,0.0010237064,0.00024941057,0.0007177211],"genre_scores_gemma":[0.9796657,0.0007821629,0.016341483,0.000068555324,0.0000046002756,0.00006412053,0.002168945,0.00005232132,0.0008520691],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999819,0.000028156815,0.000011171727,0.000054207005,0.0000603338,0.000027148242],"domain_scores_gemma":[0.9998957,0.000020584675,0.000040406634,0.000015465275,0.000012489548,0.000015347676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032909308,0.0004387406,0.0003390803,0.00032519517,0.00014363328,0.00053017813,0.00024906694,0.00024811557,0.0006592975],"category_scores_gemma":[0.00015221376,0.0001938742,0.00046657777,0.00024891883,0.00024106746,0.00017853956,0.0003424738,0.00058577047,0.00016077561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015816612,0.000035317087,0.0008505925,0.000036744103,0.000022269618,0.0000211841,0.000010205153,0.0008991723,0.9963188,0.00014412538,0.000043764812,0.0014595606],"study_design_scores_gemma":[0.000024688637,0.0006772591,0.014437974,0.000009007328,0.0000769661,0.00023512938,0.000037274003,0.02777566,0.9540317,0.00023827131,0.0024385748,0.000017410563],"about_ca_topic_score_codex":0.0015216143,"about_ca_topic_score_gemma":0.0016863284,"teacher_disagreement_score":0.0015216143,"about_ca_system_score_codex":0.0004986461,"about_ca_system_score_gemma":0.00028996228,"threshold_uncertainty_score":0.003618002},"labels":[],"label_agreement":null},{"id":"W3204471759","doi":"10.1016/j.mcpro.2021.100155","title":"Uncovering the Depths of the Human Proteome: Antibody-based Technologies for Ultrasensitive Multiplexed Protein Detection and Quantification","year":2021,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Advanced Biosensing Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Multiplex; Proteomics; Proteome; Computational biology; Quantitative proteomics; Human proteome project; Computer science; Biomarker discovery; Complement (music); Biomarker; Nanotechnology; Data science; Chemistry; Bioinformatics; Biology; Materials science; Biochemistry","score_opus":0.019337443464180502,"score_gpt":0.3100486383238218,"score_spread":0.2907111948596413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3204471759","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014713722,0.9958444,0.001123247,0.00047760468,0.00033970302,0.0000095199775,0.000032090786,0.00002475507,0.0020015577],"genre_scores_gemma":[0.00082005234,0.99577624,0.0012870376,0.00036165258,0.0001557542,0.000017542863,0.00004928255,0.0000048881475,0.0015274872],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99974436,0.000037310852,0.000020218655,0.00004647194,0.0001238909,0.000027594515],"domain_scores_gemma":[0.9996642,0.00014651137,0.000036273377,0.000013399638,0.00010756891,0.000032096672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096382695,0.0011782768,0.0010410041,0.0038803013,0.00035298854,0.0015625077,0.0010634379,0.0014871839,0.0025179067],"category_scores_gemma":[0.000711164,0.00044585357,0.0004900846,0.0031230813,0.0007817723,0.002466259,0.0009692832,0.002579552,0.0042290348],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041465544,0.000082344,0.00014653153,0.007866677,0.000060164344,0.00019672948,0.00006105063,0.00035355895,0.012640676,0.012546003,0.02892085,0.93708396],"study_design_scores_gemma":[0.000004551581,0.000055004082,0.00028240983,0.0009120219,0.000030168734,0.0005164468,0.00003792215,0.0001189528,0.0028972237,0.0031722651,0.9919516,0.000021519703],"about_ca_topic_score_codex":0.0009571339,"about_ca_topic_score_gemma":0.0013773134,"teacher_disagreement_score":0.0038803013,"about_ca_system_score_codex":0.00079932227,"about_ca_system_score_gemma":0.0009592655,"threshold_uncertainty_score":0.008423269},"labels":[],"label_agreement":null},{"id":"W3204716615","doi":"10.1016/j.mcpro.2021.100157","title":"Assessing the Preanalytical Variability of Plasma and Cerebrospinal Fluid Processing and Its Effects on Inflammation-Related Protein Biomarkers","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Iron Metabolism and Disorders","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"H2020 Excellent Science; Vetenskapsrådet; Hjärnfonden; Multiple Sclerosis Society of Canada","keywords":"Cerebrospinal fluid; Biomarker; Inflammation; Blood proteins; Medicine; Multiplex; Proteomics; Immunoassay; Fold change; Multiple sclerosis; Acute-phase protein; Immunology; Internal medicine; Bioinformatics; Chemistry; Biology; Biochemistry; Antibody; Downregulation and upregulation","score_opus":0.007418049703971529,"score_gpt":0.24862564308104268,"score_spread":0.24120759337707115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3204716615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86947495,0.016849434,0.1070281,0.0009185451,0.00092519145,0.00068660174,0.0016023072,0.0006110618,0.0019039614],"genre_scores_gemma":[0.91898346,0.0038320213,0.07135037,0.0009846697,0.00028350958,0.00091286574,0.0018823199,0.00023801152,0.0015326951],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.98968387,0.0028028484,0.0010555942,0.002182743,0.0038291896,0.00044584658],"domain_scores_gemma":[0.99199003,0.002944345,0.0020163571,0.0012200469,0.0016681248,0.00016117009],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0071375733,0.0010001684,0.0007399924,0.00089896104,0.0008165179,0.0016111272,0.000678708,0.0009932668,0.00079502433],"category_scores_gemma":[0.013239145,0.0004313913,0.00067290285,0.00093417946,0.001172832,0.0007166844,0.00068292156,0.0011225353,0.00046693993],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025775528,0.00038581667,0.06129381,0.00088948506,0.00065748906,0.00040056312,0.0008128094,0.001210171,0.89458483,0.00050484226,0.00090876804,0.03577387],"study_design_scores_gemma":[0.00005098312,0.0025374242,0.17422473,0.0001253647,0.0005647228,0.0015418917,0.00048543047,0.0053202193,0.8061585,0.0009849458,0.0078783,0.00012743028],"about_ca_topic_score_codex":0.0012915756,"about_ca_topic_score_gemma":0.0017027889,"teacher_disagreement_score":0.0071375733,"about_ca_system_score_codex":0.0005880066,"about_ca_system_score_gemma":0.0010132302,"threshold_uncertainty_score":0.037747502},"labels":[],"label_agreement":null},{"id":"W3213131303","doi":"10.1016/j.mcpro.2021.100174","title":"Proteomic Analysis of Trichomonas vaginalis Phagolysosome, Lysosomal Targeting, and Unconventional Secretion of Cysteine Peptidases","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"H2020 Excellent Science; European Regional Development Fund; Horizon 2020 Framework Programme; H2020 Spreading Excellence and Widening Participation; Grantová Agentura, Univerzita Karlova; Univerzita Karlova v Praze; Grantová Agentura České Republiky; Ministerstvo Školství, Mládeže a Tělovýchovy","keywords":"Lysosome; Secretion; Biology; Proteome; Phagolysosome; Cell biology; Biochemistry; Proteases; Secretory pathway; Glycosylation; Secretory protein; Endosome; Golgi apparatus; Endoplasmic reticulum; Phagosome; Phagocytosis; Enzyme; Receptor","score_opus":0.009249045202623497,"score_gpt":0.2499641802191512,"score_spread":0.24071513501652772,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3213131303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936039,0.002321241,0.0015288577,0.00006168425,0.000015023821,0.00003245464,0.0017246455,0.00002786023,0.0006844384],"genre_scores_gemma":[0.9836263,0.0035060016,0.0066597443,0.00011225245,0.0000313825,0.00006659026,0.0040278337,0.000030587686,0.0019392765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991655,0.000008143908,0.000009826765,0.000021272237,0.000026843252,0.000017373322],"domain_scores_gemma":[0.99991834,0.000010335452,0.00002137803,0.000006279012,0.000021857879,0.00002192389],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011579605,0.0003308825,0.00030445185,0.00050198036,0.00018449796,0.00026959015,0.00011486763,0.00020808398,0.00032974128],"category_scores_gemma":[0.00016517391,0.000097683165,0.00031578686,0.0004467555,0.00010397759,0.00014814496,0.00018749542,0.0001610885,0.00018970655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008460449,0.000009595284,0.0010664721,0.00008298061,0.000012895756,0.00017629209,0.000034685545,0.000022480092,0.9973394,0.000015123006,0.000025570176,0.0011298155],"study_design_scores_gemma":[0.00002143404,0.00040014432,0.22348052,0.000053086245,0.0001858878,0.0044976505,0.0005312385,0.002646236,0.7618998,0.00014391265,0.006108858,0.000031192707],"about_ca_topic_score_codex":0.00073392875,"about_ca_topic_score_gemma":0.00080008095,"teacher_disagreement_score":0.00073392875,"about_ca_system_score_codex":0.00017119029,"about_ca_system_score_gemma":0.00018952703,"threshold_uncertainty_score":0.0014593005},"labels":[],"label_agreement":null},{"id":"W3213535690","doi":"10.1016/j.mcpro.2021.100177","title":"Comparative Proteome Signatures of Trace Samples by Multiplexed Data-Independent Acquisition","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"HORIZON EUROPE Framework Programme; Horizon 2020 Framework Programme; Austrian Science Fund; European Commission","keywords":"Proteome; Proteomics; Computational biology; Tandem mass tag; Quantitative proteomics; Transcriptome; Label-free quantification; Biology; Tandem mass spectrometry; Mass spectrometry; Computer science; Bioinformatics; Chemistry; Gene expression; Gene; Genetics; Chromatography","score_opus":0.027146825609857497,"score_gpt":0.25789830613229026,"score_spread":0.23075148052243277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3213535690","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46850657,0.00094446365,0.52087533,0.00032638496,0.00008983341,0.00028218652,0.003966862,0.0036673604,0.0013408973],"genre_scores_gemma":[0.47145587,0.00084944174,0.5206277,0.00033185212,0.000050128845,0.0007660181,0.0038833926,0.000561133,0.0014744384],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984572,0.0001918602,0.00010563583,0.0005630546,0.00057598803,0.0001062329],"domain_scores_gemma":[0.99841607,0.000517392,0.00032535702,0.00037206724,0.00026068257,0.00010840803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022162842,0.0010244104,0.0007701042,0.0015491549,0.00050293707,0.0016366084,0.000857933,0.0006663723,0.00073561806],"category_scores_gemma":[0.0021851407,0.00051194866,0.0005248142,0.0014874104,0.0007520517,0.0013478999,0.0014065366,0.0014512339,0.00050515815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025275754,0.00009004521,0.0016756157,0.00009721744,0.000038240792,0.00006193363,0.00010486649,0.0006241632,0.97737485,0.0005371256,0.00018699876,0.018956264],"study_design_scores_gemma":[0.000014908018,0.00012256541,0.004753187,0.000008764257,0.000026486137,0.0002444029,0.00004186172,0.01602307,0.9759932,0.0012194156,0.0015172398,0.000034797584],"about_ca_topic_score_codex":0.00037715185,"about_ca_topic_score_gemma":0.00085434556,"teacher_disagreement_score":0.0022162842,"about_ca_system_score_codex":0.0006090907,"about_ca_system_score_gemma":0.0007074957,"threshold_uncertainty_score":0.011720955},"labels":[],"label_agreement":null},{"id":"W3214660224","doi":"10.1016/j.mcpro.2021.100178","title":"MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer; University of Ottawa; Centre Hospitalier Universitaire Sainte-Justine","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Genome Canada; Chung Hua University; Fondation Charles-Bruneau; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec; Institut de Valorisation des Données","keywords":"Computer science; Software; Sample (material); Scale (ratio); Quality (philosophy); Class (philosophy); Data mining; Quality assurance; Process (computing); Data science; Software engineering; Artificial intelligence; Operating system; External quality assessment; Medicine","score_opus":0.014176244806192971,"score_gpt":0.27235071315160664,"score_spread":0.2581744683454137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3214660224","genre_codex":"methods","genre_gemma":"software","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"software","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012846388,0.0005069084,0.62911606,0.00029037695,0.00021332137,0.0005008797,0.019723527,0.3343112,0.0024912397],"genre_scores_gemma":[0.06666782,0.0007968735,0.78592896,0.00084693235,0.00014707987,0.0029150061,0.07291625,0.065265864,0.0045152972],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.996241,0.0006151107,0.00043812924,0.0009476855,0.0015753155,0.00018277143],"domain_scores_gemma":[0.99150413,0.0039531826,0.0009860793,0.0014557196,0.0017870294,0.00031375952],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012577319,0.001964368,0.0015330622,0.004426758,0.0011314707,0.002915801,0.0031564285,0.0011459443,0.011563103],"category_scores_gemma":[0.016149305,0.0016022185,0.0012926058,0.002240173,0.0008733648,0.0023633565,0.0030844235,0.0030013623,0.0053981193],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003398369,0.00039851177,0.0184152,0.0027317903,0.0016827905,0.0009060631,0.0013523948,0.010022096,0.20371744,0.010359103,0.3519522,0.395064],"study_design_scores_gemma":[0.00083143037,0.00047482975,0.026932616,0.00043612238,0.00038852723,0.0014738587,0.00021894775,0.25668493,0.3891724,0.015758738,0.3069428,0.00068476767],"about_ca_topic_score_codex":0.0018431935,"about_ca_topic_score_gemma":0.002230024,"teacher_disagreement_score":0.012577319,"about_ca_system_score_codex":0.0009976594,"about_ca_system_score_gemma":0.0021143276,"threshold_uncertainty_score":0.06651604},"labels":[],"label_agreement":null},{"id":"W4200152005","doi":"10.1016/j.mcpro.2021.100182","title":"Immune Checkpoint Blockade Augments Changes Within Oncolytic Virus-induced Cancer MHC-I Peptidome, Creating Novel Antitumor CD8 T Cell Reactivities","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island; Dalhousie University","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; Dalhousie University; National Institutes of Health; Eberhard Karls Universität Tübingen; Dalhousie Medical Research Foundation","keywords":"Oncolytic virus; CD8; MHC class I; Immunotherapy; Cytotoxic T cell; Major histocompatibility complex; Immune checkpoint; T cell; Cancer research; Epitope; Cancer immunotherapy; Immune system; Immunology; Biology; Cancer; Antigen; Biochemistry","score_opus":0.021313802685452847,"score_gpt":0.27831751759437584,"score_spread":0.257003714908923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200152005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967044,0.00066644535,0.0018131117,0.000025744323,0.000011493639,0.00001677634,0.00009302504,0.00002959753,0.00063937],"genre_scores_gemma":[0.9968257,0.0004096955,0.0018109862,0.000029436109,0.0000049547252,0.000020291756,0.00015364386,0.0000104794235,0.00073481473],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999337,0.000006766414,0.000004244429,0.000017145358,0.000016594158,0.000021469523],"domain_scores_gemma":[0.9999733,0.0000035664643,0.000010815334,0.0000027254403,0.000002735416,0.00000687898],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005611835,0.00024643625,0.00014062205,0.00009641285,0.00005208973,0.00018759358,0.00008794812,0.0001659582,0.0006496301],"category_scores_gemma":[0.000055835386,0.00008515627,0.00013225545,0.000057426027,0.000100829886,0.00013848353,0.000109911154,0.0003915454,0.00014149133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002678165,0.000007263346,0.000047423575,0.000008795122,0.0000013821918,0.00000547344,0.0000021908538,0.00003405231,0.99943596,0.000016411264,0.0000054000648,0.00040876283],"study_design_scores_gemma":[0.00000484937,0.00016251598,0.0012936827,0.0000017847627,0.000005177021,0.000075316275,0.000006559477,0.000611822,0.99725926,0.000015138456,0.00056237343,0.0000014314942],"about_ca_topic_score_codex":0.00014008283,"about_ca_topic_score_gemma":0.0002424928,"teacher_disagreement_score":0.0006496301,"about_ca_system_score_codex":0.00015025015,"about_ca_system_score_gemma":0.0000836891,"threshold_uncertainty_score":0.002173245},"labels":[],"label_agreement":null},{"id":"W4200158231","doi":"10.1016/j.mcpro.2021.100189","title":"Multiomic Metabolic Enrichment Network Analysis Reveals Metabolite–Protein Physical Interaction Subnetworks Altered in Cancer","year":2021,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Boston University","keywords":"Computational biology; Profiling (computer programming); Metabolomics; Proteome; Proteomics; Metabolic pathway; Biology; Context (archaeology); Computer science; Bioinformatics; Gene; Genetics","score_opus":0.008309814363142022,"score_gpt":0.2554233180657761,"score_spread":0.2471135037026341,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200158231","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9529999,0.0012138875,0.039173998,0.00036956638,0.000014386771,0.000025744306,0.0043936907,0.0005215001,0.0012872393],"genre_scores_gemma":[0.98341584,0.0005370817,0.012451948,0.00005550626,0.000007006642,0.000028084225,0.0030240694,0.000032145763,0.00044823697],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998318,0.000043167478,0.000009282303,0.000058831574,0.000030376634,0.000026509604],"domain_scores_gemma":[0.99970204,0.00012325494,0.00008838641,0.000029398523,0.000028703435,0.000028146622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003453643,0.0003206371,0.00028315163,0.0017237541,0.00025794614,0.00048943656,0.00020024035,0.00015383014,0.0008876773],"category_scores_gemma":[0.00071443885,0.00012981526,0.0005517882,0.0012664801,0.00016156367,0.00033866998,0.0005145913,0.0002505797,0.00014339967],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017645307,0.0002889274,0.38730872,0.00075627584,0.0016085804,0.0010342449,0.00032828652,0.08113254,0.38789463,0.0069038915,0.0026226656,0.1283567],"study_design_scores_gemma":[0.000028745024,0.00019280975,0.61402726,0.000057536312,0.0006029987,0.0010004961,0.00029875277,0.32309943,0.04381714,0.010748537,0.006074804,0.00005144911],"about_ca_topic_score_codex":0.0021947674,"about_ca_topic_score_gemma":0.004185719,"teacher_disagreement_score":0.0021947674,"about_ca_system_score_codex":0.00038626714,"about_ca_system_score_gemma":0.0003884816,"threshold_uncertainty_score":0.004363954},"labels":[],"label_agreement":null},{"id":"W4210557422","doi":"10.1074/mcp.p700012-mcp200","title":"Calendar","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.00789144916846119,"score_gpt":0.2176171785483987,"score_spread":0.20972572937993753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210557422","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00054875674,0.0016475982,0.002319574,0.007290922,0.019531311,0.00074128597,0.027590264,0.004524994,0.93580526],"genre_scores_gemma":[0.0019616967,0.0014694713,0.001329007,0.0021298341,0.002297799,0.00036219694,0.015343216,0.0013983833,0.9737084],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983182,0.00019074569,0.00014686125,0.0003354453,0.0007004328,0.00030835226],"domain_scores_gemma":[0.9937425,0.00044254548,0.00019620615,0.0008112739,0.002878047,0.0019294407],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017925986,0.001176501,0.0013065938,0.0032780657,0.0026815415,0.008897812,0.0026264563,0.002062496,0.8550207],"category_scores_gemma":[0.008722608,0.0005508636,0.0009108749,0.0041249143,0.0005378669,0.005245011,0.0041029016,0.0022041365,0.8029441],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000253047,0.000015608399,0.00008249987,0.00008271234,0.0000013631822,0.000019673163,0.000025387319,0.000017822105,0.000066426,0.0019619288,0.96820223,0.029498879],"study_design_scores_gemma":[0.0000045160814,0.000004751826,0.00015230625,0.00002858024,7.1088976e-7,0.000017122804,0.000034377495,0.000011618599,0.000021110074,0.0003596608,0.9993625,0.0000027107278],"about_ca_topic_score_codex":0.004316725,"about_ca_topic_score_gemma":0.0050942907,"teacher_disagreement_score":0.1449793,"about_ca_system_score_codex":0.00197549,"about_ca_system_score_gemma":0.0038489979,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4212767545","doi":"10.1016/j.mcpro.2022.100212","title":"Multiple Reaction Monitoring-Mass Spectrometry Enables Robust Quantitation of Plasma Proteins Regardless of Whole Blood Processing Delays That May Occur in the Clinic","year":2022,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Warren Y. Soper Charitable Trust; Ministry of Education and Science of the Russian Federation; Fondation De Famille Alvin Segal; Ministry of Science and Higher Education of the Russian Federation; Genome Canada","keywords":"Mass spectrometry; Selected reaction monitoring; Chemistry; Chromatography; Whole blood; Tandem mass spectrometry; Medicine; Internal medicine","score_opus":0.02676756669835738,"score_gpt":0.2547923468763093,"score_spread":0.2280247801779519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4212767545","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.35910717,0.018339433,0.6006413,0.0019633002,0.001066574,0.0007093179,0.0029170082,0.0072649736,0.007990991],"genre_scores_gemma":[0.61748785,0.010596072,0.36225596,0.0015201761,0.00049144175,0.00073736295,0.0015071979,0.0005912139,0.004812667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9961617,0.00093153364,0.00017123553,0.0011524657,0.0013842374,0.00019870602],"domain_scores_gemma":[0.9989372,0.00034926098,0.00030761445,0.00013298947,0.00021821349,0.000054858003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031748083,0.0016013103,0.0009438872,0.00102069,0.0003878209,0.0010653986,0.0007540078,0.0012152513,0.0010066623],"category_scores_gemma":[0.0029352028,0.00060535525,0.00053411955,0.0006955516,0.00074823224,0.00092709565,0.00095594407,0.0019401348,0.0011973999],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027513324,0.00009225639,0.0012525069,0.00027916706,0.00006927593,0.00010823186,0.00007300963,0.0005305878,0.9747491,0.0005309819,0.0008744482,0.021165278],"study_design_scores_gemma":[0.000031307958,0.0005520782,0.0034850878,0.0000432354,0.00006308106,0.00048074717,0.000041504798,0.011663506,0.97602975,0.0006445599,0.0069074174,0.000057729645],"about_ca_topic_score_codex":0.00041718432,"about_ca_topic_score_gemma":0.00069325056,"teacher_disagreement_score":0.0031748083,"about_ca_system_score_codex":0.00048402968,"about_ca_system_score_gemma":0.00071470987,"threshold_uncertainty_score":0.016790211},"labels":[],"label_agreement":null},{"id":"W4220728064","doi":"10.1016/j.mcpro.2022.100228","title":"Immunopeptidomic Analyses of Colorectal Cancers With and Without Microsatellite Instability","year":2022,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"National Institute on Drug Abuse; National Institute of Neurological Disorders and Stroke; National Institute of Mental Health; Genome Canada; Canadian Institutes of Health Research; National Cancer Institute; National Institutes of Health; National Human Genome Research Institute; Canadian Cancer Society; National Heart, Lung, and Blood Institute","keywords":"Colorectal cancer; Microsatellite instability; Antigen; Biology; Cancer research; Cancer; Gene; Immunology; Microsatellite; Genetics","score_opus":0.01137190697826645,"score_gpt":0.2365691130917897,"score_spread":0.22519720611352326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220728064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99293846,0.0008411104,0.0034966997,0.00004526129,0.000022240654,0.00004446246,0.0017930962,0.00004327141,0.0007752657],"genre_scores_gemma":[0.9855796,0.0010415915,0.0076006223,0.00011688964,0.000016767402,0.000067598616,0.004491148,0.000026533442,0.0010592472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988747,0.000013260225,0.000012848207,0.000027846587,0.00003554693,0.00002296418],"domain_scores_gemma":[0.9998435,0.000034385874,0.00004609824,0.000013830251,0.000032555334,0.000029653562],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012729806,0.00029413096,0.00015199592,0.00081458985,0.00018204971,0.0001623008,0.00012598421,0.00018250247,0.0006264547],"category_scores_gemma":[0.00023371004,0.00009660739,0.00017162079,0.0004888573,0.00011639984,0.00008449146,0.00016518195,0.00023771232,0.00017301855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051061434,0.000008342126,0.0011797332,0.000014703925,0.000009239169,0.00009521681,0.000012231695,0.000025543879,0.9978162,0.000016441487,0.000018181927,0.00075302477],"study_design_scores_gemma":[0.000022930666,0.0006463729,0.31420654,0.000014969257,0.00012383,0.0041949805,0.00019844942,0.0023819278,0.67269135,0.00013811483,0.005362797,0.000017703127],"about_ca_topic_score_codex":0.00066515215,"about_ca_topic_score_gemma":0.0012174131,"teacher_disagreement_score":0.00081458985,"about_ca_system_score_codex":0.0001084693,"about_ca_system_score_gemma":0.00010692151,"threshold_uncertainty_score":0.0020956397},"labels":[],"label_agreement":null},{"id":"W4230778412","doi":"10.1074/mcp.ra117.000385","title":"Extended Linkers Improve the Detection of Protein-protein Interactions (PPIs) by Dihydrofolate Reductase Protein-fragment Complementation Assay (DHFR PCA) in Living Cells","year":2018,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; PROTEO","funders":"Institute of Genetics","keywords":"Dihydrofolate reductase; Protein-fragment complementation assay; Complementation; Chemistry; Fragment (logic); Biochemistry; Molecular biology; Computational biology; Enzyme; Biology; Computer science; Gene; Algorithm","score_opus":0.005673057410713307,"score_gpt":0.2334238040233046,"score_spread":0.2277507466125913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4230778412","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92686945,0.002234911,0.06721747,0.00031577013,0.00006118583,0.00008936596,0.0006831458,0.00088754226,0.0016411119],"genre_scores_gemma":[0.90149164,0.0017466913,0.08980256,0.00032698762,0.000022482995,0.00017442784,0.0018688823,0.00037172646,0.0041946024],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896777,0.00022972932,0.000107510576,0.00024325421,0.00033501408,0.00011677666],"domain_scores_gemma":[0.99904364,0.00038530296,0.0002530661,0.00011315874,0.00010534889,0.00009942302],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008896938,0.0009461738,0.0006221768,0.00033515994,0.00018255624,0.00067366,0.00052739796,0.0009147331,0.0017218131],"category_scores_gemma":[0.00094803446,0.00046339558,0.0005836547,0.00034198066,0.0003727658,0.0008455729,0.0007528455,0.0011945833,0.00089986983],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024231296,0.000024215795,0.00008743327,0.000021264546,0.0000065179283,0.000016775311,0.000009176416,0.00009225471,0.9990614,0.000026812802,0.000017218024,0.00061264855],"study_design_scores_gemma":[0.0000060600864,0.00013860523,0.0010779372,0.0000040921855,0.000015840773,0.00008840053,0.000013756089,0.00087895605,0.9968882,0.000032639648,0.0008488705,0.000006708576],"about_ca_topic_score_codex":0.0006454001,"about_ca_topic_score_gemma":0.0011458604,"teacher_disagreement_score":0.0017218131,"about_ca_system_score_codex":0.0005335507,"about_ca_system_score_gemma":0.00022348134,"threshold_uncertainty_score":0.005760014},"labels":[],"label_agreement":null},{"id":"W4230897000","doi":"10.1016/s1535-9476(20)34243-2","title":"Calendar","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chemistry; Computer science","score_opus":0.008818901963241626,"score_gpt":0.1988734551948476,"score_spread":0.19005455323160597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4230897000","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006315621,0.0027244897,0.0028417653,0.008829373,0.022812884,0.0007815034,0.047243755,0.0062738485,0.90786076],"genre_scores_gemma":[0.0025145123,0.0029809654,0.0018771611,0.0031223376,0.0032768412,0.00046402568,0.032949336,0.0020268816,0.95078796],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998669,0.00013959424,0.00011506079,0.00028326464,0.0005724513,0.00022068499],"domain_scores_gemma":[0.99501824,0.0003336501,0.00019137087,0.00066911284,0.0024229398,0.0013646869],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016809361,0.0012978071,0.0012933458,0.0031814899,0.002107986,0.007875712,0.0024414605,0.0018533425,0.8296649],"category_scores_gemma":[0.007037949,0.00050266506,0.0008426632,0.0037359954,0.00043323834,0.0046731844,0.0034851944,0.0019031595,0.77787185],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000314738,0.000016213271,0.00009347888,0.00010914478,0.0000017873411,0.000020570375,0.00002085211,0.000017205231,0.000114911934,0.0021019315,0.96252364,0.034948744],"study_design_scores_gemma":[0.0000046996324,0.0000050826725,0.00015168682,0.00003175765,0.0000010060922,0.0000199108,0.000023244831,0.00001196094,0.0000336117,0.0003930545,0.99932134,0.0000027129388],"about_ca_topic_score_codex":0.0035707008,"about_ca_topic_score_gemma":0.003930696,"teacher_disagreement_score":0.17033511,"about_ca_system_score_codex":0.0016519191,"about_ca_system_score_gemma":0.003232744,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4233784662","doi":"10.1016/s1535-9476(20)34717-4","title":"Calendar","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computational biology; Computer science; Biology","score_opus":0.008818901963241626,"score_gpt":0.1988734551948476,"score_spread":0.19005455323160597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4233784662","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007016836,0.0033230295,0.0017664498,0.009747498,0.0370899,0.00087992585,0.04221876,0.0038107529,0.90046215],"genre_scores_gemma":[0.0022327127,0.0027295663,0.0011322733,0.0027731615,0.0042108493,0.0003888513,0.022850957,0.001178389,0.9625032],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984871,0.00014780878,0.00013461016,0.00028562517,0.00063615636,0.0003085539],"domain_scores_gemma":[0.99419844,0.00033656557,0.00022851942,0.00057253207,0.0026296065,0.0020344302],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017595943,0.0013001299,0.0012974717,0.003534749,0.0024881256,0.009030134,0.002190559,0.0017914803,0.8260866],"category_scores_gemma":[0.0075580175,0.00045509372,0.00088410126,0.0046242913,0.00047865778,0.004385271,0.0034415056,0.0018843677,0.766476],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032099826,0.000012532002,0.00008857638,0.0000900998,0.0000012400732,0.000016984379,0.000019435616,0.000013016799,0.000070755756,0.0014666033,0.9712687,0.026919972],"study_design_scores_gemma":[0.000004710502,0.000005228191,0.00019044604,0.000033727858,7.151479e-7,0.000016414368,0.00003212101,0.0000082598435,0.000022358863,0.00029412817,0.9993894,0.000002383865],"about_ca_topic_score_codex":0.0037045663,"about_ca_topic_score_gemma":0.004593495,"teacher_disagreement_score":0.17391342,"about_ca_system_score_codex":0.001792893,"about_ca_system_score_gemma":0.0034322827,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4233872376","doi":"10.1016/s1535-9476(20)34796-4","title":"Program: Thursday, October 9, 2003","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cholesterol and Lipid Metabolism","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Thursday; Philosophy; Theology","score_opus":0.010279450900729572,"score_gpt":0.2534612706095223,"score_spread":0.2431818197087927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4233872376","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0028524832,0.0048754667,0.0010813508,0.0077800034,0.028036943,0.0008026014,0.010018808,0.0038484177,0.9407039],"genre_scores_gemma":[0.001238851,0.00057967345,0.0001962081,0.00061484694,0.0008167354,0.00008685045,0.0020278064,0.0001861559,0.99425286],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994197,0.000052006977,0.000019959854,0.00014150869,0.00017865273,0.00018809839],"domain_scores_gemma":[0.99909306,0.000038938884,0.000031079828,0.00007013224,0.00026720262,0.00049968937],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001037138,0.0020454973,0.0010814067,0.00137294,0.0025777342,0.005627404,0.0020805558,0.0030200218,0.81069154],"category_scores_gemma":[0.0012172156,0.00047547437,0.001470478,0.0007710757,0.00039983334,0.0015607554,0.0029965078,0.002254433,0.70087737],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002987777,0.00013640207,0.00017975376,0.00016842155,0.0000069833222,0.00007480935,0.00003366735,0.000037057795,0.0005874875,0.0007873336,0.95977825,0.03791104],"study_design_scores_gemma":[0.000033150052,0.000109587476,0.001101002,0.00011822446,0.000005052984,0.000035477893,0.00005281408,0.000049588787,0.00022539734,0.00025563771,0.99800724,0.0000068743457],"about_ca_topic_score_codex":0.0033531236,"about_ca_topic_score_gemma":0.011121347,"teacher_disagreement_score":0.18930846,"about_ca_system_score_codex":0.0015790729,"about_ca_system_score_gemma":0.0011125103,"threshold_uncertainty_score":0.27002555},"labels":[],"label_agreement":null},{"id":"W4234143435","doi":"10.1074/mcp.p900001-mcp200","title":"Calendar","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Computational biology; Biology","score_opus":0.007170429646209457,"score_gpt":0.20688176089429247,"score_spread":0.19971133124808302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4234143435","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006016818,0.0027023165,0.00184205,0.009936333,0.031171933,0.00076153886,0.03338273,0.0038131145,0.9157884],"genre_scores_gemma":[0.0022828155,0.0024218566,0.0010496391,0.0027935398,0.004060733,0.00039142818,0.017975975,0.0011795597,0.96784437],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983833,0.00018023673,0.00013971343,0.00031281178,0.00069140777,0.00029258098],"domain_scores_gemma":[0.99342924,0.00045226113,0.0002527313,0.0007116291,0.0031206806,0.0020334765],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0018050359,0.0012151576,0.0012110325,0.0032700764,0.002410339,0.008518437,0.0021857312,0.0019106151,0.831587],"category_scores_gemma":[0.008576788,0.00049579085,0.00079574133,0.0040442864,0.00049006613,0.0045307,0.0034404313,0.0019710625,0.78004074],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027383918,0.000013225074,0.000084883824,0.00007992233,0.0000011601833,0.000016672713,0.000017865084,0.000015615615,0.000066448534,0.0016593434,0.96918947,0.028827954],"study_design_scores_gemma":[0.0000044908265,0.000005933881,0.0001925876,0.000033051554,7.022115e-7,0.000017576564,0.000028866894,0.000010191099,0.00002169712,0.00032949692,0.99935263,0.0000026806258],"about_ca_topic_score_codex":0.0036763882,"about_ca_topic_score_gemma":0.004141617,"teacher_disagreement_score":0.16841298,"about_ca_system_score_codex":0.0017982767,"about_ca_system_score_gemma":0.0033426464,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4235088431","doi":"10.1074/mcp.s800708-mcp200","title":"Session 3","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Session (web analytics); Computer science; World Wide Web","score_opus":0.006979421901939956,"score_gpt":0.24593565213424884,"score_spread":0.23895623023230889,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4235088431","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001957316,0.003847964,0.015596832,0.012277456,0.02324224,0.0012762687,0.015724167,0.0080740135,0.9180036],"genre_scores_gemma":[0.009933999,0.0028054835,0.006650609,0.0048665595,0.003795412,0.0009927066,0.015809549,0.0031060448,0.95203966],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980476,0.00033642462,0.000091216214,0.0004652894,0.0007623875,0.00029703783],"domain_scores_gemma":[0.99705374,0.00022566917,0.00008528235,0.00034451153,0.0013544639,0.00093623745],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0027151625,0.0013506416,0.0012161186,0.0013806315,0.0022008303,0.00646885,0.0024797984,0.003190646,0.762314],"category_scores_gemma":[0.005652185,0.0004869892,0.0015959411,0.0013474572,0.00046938774,0.0029834586,0.0057813753,0.0023825148,0.6150592],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014341106,0.000053834,0.00022830378,0.00022336996,0.000010088116,0.00007386175,0.000074208845,0.00015699529,0.0005768931,0.00438016,0.91487974,0.07919925],"study_design_scores_gemma":[0.000015344096,0.000029105235,0.000270052,0.000081971906,0.0000043485884,0.000085793334,0.0000619504,0.000076005264,0.00023024212,0.0014544897,0.9976834,0.000007327575],"about_ca_topic_score_codex":0.0026149063,"about_ca_topic_score_gemma":0.0039137285,"teacher_disagreement_score":0.23768598,"about_ca_system_score_codex":0.0020999778,"about_ca_system_score_gemma":0.0040661213,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4236476342","doi":"10.1074/mcp.p500010-mcp200","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chemistry","score_opus":0.007542450073908759,"score_gpt":0.2042810107018286,"score_spread":0.19673856062791986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236476342","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005825919,0.0023055754,0.0017333884,0.007902558,0.024546117,0.00084300747,0.03451013,0.0039870804,0.92358965],"genre_scores_gemma":[0.0018723764,0.0020644458,0.0011328358,0.002472572,0.0026995537,0.0003719067,0.017452268,0.0010944946,0.97083956],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987116,0.00013600582,0.00011243859,0.0002468779,0.0005453473,0.00024778198],"domain_scores_gemma":[0.99403256,0.00038688432,0.00020476284,0.0005663964,0.0029257308,0.0018837147],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016861038,0.0011643266,0.0011686666,0.0031393243,0.002406849,0.007903084,0.0021385686,0.0017612744,0.8425637],"category_scores_gemma":[0.008073122,0.00050236116,0.0008211726,0.003868066,0.00045438673,0.004031494,0.0031711976,0.0018121214,0.7730075],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025593445,0.00001229807,0.00007390124,0.00008172792,0.000001013817,0.000017244005,0.000019365929,0.000014359785,0.000058643403,0.0011722211,0.97258353,0.025940163],"study_design_scores_gemma":[0.000004646206,0.0000052677237,0.00017900854,0.000033813074,6.7755997e-7,0.000015892623,0.000030224315,0.000009858933,0.000022144428,0.00025121766,0.99944466,0.0000025890533],"about_ca_topic_score_codex":0.0052873194,"about_ca_topic_score_gemma":0.006118952,"teacher_disagreement_score":0.15743631,"about_ca_system_score_codex":0.0018769815,"about_ca_system_score_gemma":0.0035671787,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4237101896","doi":"10.1016/s1535-9476(20)31483-3","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.007542450073908759,"score_gpt":0.2042810107018286,"score_spread":0.19673856062791986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4237101896","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004673131,0.0023996136,0.0013590296,0.0057106814,0.024346864,0.00060621876,0.022708839,0.0033588738,0.93904257],"genre_scores_gemma":[0.0015366569,0.0021530606,0.0007995281,0.0019066284,0.0030541231,0.00025115427,0.012896336,0.0008907238,0.97651184],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.999059,0.00008396567,0.00007915878,0.00019661897,0.00039879623,0.0001824985],"domain_scores_gemma":[0.99637306,0.00019884582,0.00014028348,0.00033614537,0.0016505355,0.0013011901],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011240725,0.0012796267,0.0011842252,0.0027943049,0.0022255313,0.007941107,0.002026763,0.0015398382,0.85286754],"category_scores_gemma":[0.004839545,0.00047051077,0.00073833286,0.0033355863,0.0003771479,0.0040069805,0.003002507,0.0018231153,0.7961745],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026153684,0.000015952093,0.00006849923,0.00007596642,0.0000010597194,0.000016014039,0.000014972789,0.000012527655,0.00008631864,0.0012193026,0.96906036,0.029402828],"study_design_scores_gemma":[0.0000047878825,0.0000051351394,0.00014579273,0.00002751741,7.126475e-7,0.000015062947,0.00002337547,0.000008943628,0.000024720024,0.00021546194,0.999526,0.0000023684206],"about_ca_topic_score_codex":0.0035699508,"about_ca_topic_score_gemma":0.004173081,"teacher_disagreement_score":0.14713246,"about_ca_system_score_codex":0.0014827697,"about_ca_system_score_gemma":0.0024598949,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4238458109","doi":"10.1074/mcp.p800012-mcp200","title":"Calendar","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.01563602921773039,"score_gpt":0.19587266696555214,"score_spread":0.18023663774782175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4238458109","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005076167,0.0019298184,0.0018173809,0.008362471,0.022804936,0.00066167646,0.026120303,0.0044237827,0.933372],"genre_scores_gemma":[0.0020533667,0.0017428942,0.0011155308,0.0022635253,0.0031827516,0.0003463654,0.015616947,0.0013949085,0.9722837],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984945,0.00015931154,0.00011214496,0.00030049606,0.00065800245,0.00027561607],"domain_scores_gemma":[0.9947125,0.00033554286,0.00017890603,0.0005869516,0.0025129814,0.0016731734],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001737127,0.0013182221,0.0012352107,0.0032242676,0.0025467663,0.008712101,0.0024184266,0.0021850835,0.85269433],"category_scores_gemma":[0.00696556,0.00049703603,0.00088894897,0.0034958506,0.0005162349,0.004795529,0.0039473167,0.002051256,0.7940776],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026110161,0.000013173624,0.00007246061,0.00007934596,0.0000013261184,0.000018815213,0.000022168557,0.000015674575,0.00007145432,0.0018219391,0.9685656,0.029291907],"study_design_scores_gemma":[0.000004030916,0.0000046005453,0.00015527812,0.000029239483,6.638316e-7,0.000015099489,0.000027794495,0.0000105818335,0.000020756948,0.0003153645,0.9994142,0.0000024598658],"about_ca_topic_score_codex":0.003589159,"about_ca_topic_score_gemma":0.0046061976,"teacher_disagreement_score":0.14730567,"about_ca_system_score_codex":0.0018401956,"about_ca_system_score_gemma":0.0033243026,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4238766780","doi":"10.1074/mcp.s800108-mcp200","title":"Program","year":2009,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Computational biology; Biology","score_opus":0.006837671190578831,"score_gpt":0.2582248405012476,"score_spread":0.2513871693106688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4238766780","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015983273,0.0016706153,0.009442654,0.013251454,0.0125307925,0.0005686606,0.006989954,0.0050880844,0.9488595],"genre_scores_gemma":[0.005885863,0.0011255376,0.004284587,0.0033205247,0.0016706544,0.00035312586,0.0062013445,0.0016292868,0.975529],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99842095,0.00020836796,0.00006336841,0.0004451986,0.0006126103,0.0002495113],"domain_scores_gemma":[0.9968804,0.00023123184,0.00009445449,0.00047397686,0.0014043605,0.0009156122],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0019998804,0.0009758594,0.0006751492,0.0013680774,0.0024966768,0.005011984,0.0024779013,0.002194829,0.7407498],"category_scores_gemma":[0.0037840803,0.0004401095,0.0008587496,0.0012185385,0.0005880071,0.0035678316,0.0043744897,0.0022950352,0.50705504],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072823255,0.0000651923,0.00028937173,0.00012209821,0.000006479644,0.000053325395,0.00011378038,0.000087018074,0.00050715025,0.013299882,0.8793609,0.10602208],"study_design_scores_gemma":[0.00000640525,0.000016948747,0.00026209746,0.00003702967,0.0000018501808,0.00003644814,0.000058862388,0.00006134435,0.00016067676,0.0016358485,0.9977182,0.0000043428713],"about_ca_topic_score_codex":0.002345508,"about_ca_topic_score_gemma":0.0038217613,"teacher_disagreement_score":0.25925022,"about_ca_system_score_codex":0.0020893002,"about_ca_system_score_gemma":0.0036063504,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4239799045","doi":"10.1016/s1535-9476(20)31496-1","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.007542450073908759,"score_gpt":0.2042810107018286,"score_spread":0.19673856062791986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4239799045","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00060654257,0.0035393878,0.00207342,0.011035601,0.032002322,0.0006529472,0.035530373,0.0042150524,0.9103443],"genre_scores_gemma":[0.002780816,0.0035557004,0.0013276846,0.003342553,0.0046642157,0.00038842,0.025968265,0.0015426629,0.9564296],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998502,0.00015826996,0.000116241215,0.00031356886,0.0006296538,0.0002802139],"domain_scores_gemma":[0.9952401,0.0002830226,0.00018393951,0.00052094995,0.0022081279,0.0015638854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017194558,0.0013041458,0.0013258348,0.0032054728,0.0026722231,0.00947814,0.0023406146,0.0019317155,0.8138889],"category_scores_gemma":[0.007391072,0.00046583632,0.0008086914,0.004121396,0.0004873177,0.005145422,0.003725372,0.0021300793,0.7446495],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025975518,0.000011256065,0.00007944129,0.00007491648,0.0000012590785,0.000015301432,0.000020409389,0.000016383758,0.00006867652,0.0019925472,0.97072846,0.026965473],"study_design_scores_gemma":[0.000004197836,0.000004628757,0.00015904875,0.00003351008,7.876488e-7,0.000015242485,0.000029698285,0.000012586358,0.000023408826,0.00037769286,0.99933654,0.00000266805],"about_ca_topic_score_codex":0.004727869,"about_ca_topic_score_gemma":0.0052936557,"teacher_disagreement_score":0.8138889,"about_ca_system_score_codex":0.001976216,"about_ca_system_score_gemma":0.0034945307,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4241245137","doi":"10.1016/s1535-9476(20)31753-9","title":"Calendar","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computational biology; Computer science; Biology","score_opus":0.00789144916846119,"score_gpt":0.2176171785483987,"score_spread":0.20972572937993753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4241245137","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00064457324,0.0035158794,0.0016921926,0.010145837,0.036629606,0.00066553825,0.023368476,0.0033406282,0.9199973],"genre_scores_gemma":[0.0024812473,0.0034154248,0.0012329781,0.0028398184,0.0048214495,0.00031634863,0.017106162,0.001110666,0.9666758],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998642,0.00013399406,0.000104291605,0.00028014922,0.00056460436,0.00027486874],"domain_scores_gemma":[0.9958294,0.0002167783,0.0001533959,0.00036008924,0.0018721411,0.0015682273],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014999849,0.001434443,0.0011983389,0.0028164443,0.0024837812,0.008411757,0.002440281,0.0021076398,0.83415854],"category_scores_gemma":[0.0056472714,0.00046727926,0.0008766534,0.0031240718,0.00046854888,0.004327048,0.003649616,0.0020718833,0.7532743],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003189075,0.00001547168,0.000085137435,0.000099567165,0.0000014719732,0.000024326235,0.000020732361,0.000015783467,0.000083153805,0.001781849,0.9674636,0.03037707],"study_design_scores_gemma":[0.000004857453,0.0000060419416,0.00017013842,0.00003970961,9.3768045e-7,0.000024712897,0.000035919045,0.000010081131,0.00002888828,0.0003322826,0.9993437,0.0000026755322],"about_ca_topic_score_codex":0.0033662382,"about_ca_topic_score_gemma":0.004361071,"teacher_disagreement_score":0.16584146,"about_ca_system_score_codex":0.0018149907,"about_ca_system_score_gemma":0.0034818836,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4241275612","doi":"10.1016/s1535-9476(20)30057-8","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chemistry; Computer science; Computational biology; Biology","score_opus":0.007542450073908759,"score_gpt":0.2042810107018286,"score_spread":0.19673856062791986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4241275612","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006788679,0.002937849,0.0015056252,0.009453608,0.027585072,0.0007016349,0.0504237,0.0031531716,0.9035605],"genre_scores_gemma":[0.0025121348,0.0030269087,0.0010392177,0.0028408882,0.0037674329,0.00037312083,0.02689422,0.0010770657,0.95846903],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984825,0.00014157635,0.00013414731,0.000308286,0.0006343917,0.00029905845],"domain_scores_gemma":[0.9939925,0.00037461432,0.0002367817,0.0005890131,0.0030764593,0.0017306932],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0015595069,0.0012083075,0.0011299826,0.0037021772,0.0025940915,0.008140225,0.00208999,0.0016354239,0.79453284],"category_scores_gemma":[0.008041274,0.0004489552,0.00075738167,0.0049876412,0.00049362687,0.0041095763,0.0030327213,0.0017890144,0.73429185],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026409607,0.000010974946,0.0001017869,0.00007915817,0.000001091101,0.00001611134,0.000020475916,0.000014708709,0.000060314454,0.0017865733,0.9738713,0.024011169],"study_design_scores_gemma":[0.0000042591523,0.0000045765205,0.00022735071,0.00003350073,6.826319e-7,0.000016696753,0.000034647786,0.000008189799,0.000019802414,0.00028129757,0.99936646,0.000002481642],"about_ca_topic_score_codex":0.0063225077,"about_ca_topic_score_gemma":0.0066671185,"teacher_disagreement_score":0.20546716,"about_ca_system_score_codex":0.0020230166,"about_ca_system_score_gemma":0.0039304085,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4242067245","doi":"10.1016/s1535-9476(20)30765-9","title":"Calendar","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.004545576903112198,"score_gpt":0.17940536877754368,"score_spread":0.17485979187443149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4242067245","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005381292,0.002034808,0.0021091343,0.0058153854,0.01678426,0.00082934456,0.049548406,0.00540316,0.91693735],"genre_scores_gemma":[0.0022219354,0.0021746412,0.001694707,0.0020352928,0.0024550608,0.00045338893,0.03643742,0.001736513,0.95079106],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99855083,0.00015467506,0.00011921376,0.00028433747,0.0006213173,0.00026955418],"domain_scores_gemma":[0.99473286,0.00031802375,0.00018751094,0.00058875314,0.0026292005,0.0015437262],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0018757265,0.0012851708,0.0012751294,0.003607106,0.0024524762,0.008784003,0.0023039784,0.0017474305,0.84207577],"category_scores_gemma":[0.0063657262,0.00049792964,0.0008719213,0.0046385974,0.00044559565,0.0044480544,0.0031988653,0.0017856949,0.78688014],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003298157,0.000014532907,0.000082707236,0.00009164169,0.0000012867284,0.000016279128,0.000018570701,0.000018343742,0.00009160761,0.0017371376,0.9681675,0.029727254],"study_design_scores_gemma":[0.0000047466733,0.0000052101636,0.00019412376,0.000028561773,7.9588335e-7,0.000015283425,0.000026084257,0.000012574704,0.000028809021,0.00028685172,0.9993943,0.0000027858064],"about_ca_topic_score_codex":0.006046006,"about_ca_topic_score_gemma":0.005752687,"teacher_disagreement_score":0.15792423,"about_ca_system_score_codex":0.0020199057,"about_ca_system_score_gemma":0.0034612485,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4242163088","doi":"10.1016/s1535-9476(20)34797-6","title":"Program: Friday, October 10, 2003","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"MEDLINE; Chemistry; Biochemistry","score_opus":0.016565655478472725,"score_gpt":0.29188592612537195,"score_spread":0.27532027064689923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4242163088","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020280567,0.0023564086,0.0010820584,0.008109898,0.018698597,0.00087357877,0.009867868,0.0046807355,0.9523028],"genre_scores_gemma":[0.0012416432,0.0003790449,0.00022059954,0.000871807,0.00089164753,0.00010989256,0.002326837,0.0002677357,0.99369085],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99937016,0.000050285325,0.000020305446,0.00013719588,0.00020746625,0.00021473135],"domain_scores_gemma":[0.9987262,0.000047839716,0.00003914705,0.000095122225,0.00038393086,0.00070772244],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0011931594,0.0018141252,0.0009979174,0.0012873159,0.002684987,0.0053974898,0.0020242918,0.0030543837,0.84693915],"category_scores_gemma":[0.0015743356,0.00048775482,0.0013256428,0.0007954259,0.00035896563,0.0015704385,0.0036499298,0.0023283307,0.7604943],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020547214,0.00011357783,0.0001511525,0.000089401714,0.000004436945,0.000050745664,0.000021615768,0.000023851657,0.00038364957,0.0006157472,0.96882933,0.029510977],"study_design_scores_gemma":[0.000029832612,0.000088546345,0.0010139591,0.000078937774,0.0000038661697,0.00003199092,0.00004450488,0.00003704417,0.00017612014,0.0002639659,0.99822503,0.0000062256863],"about_ca_topic_score_codex":0.0037553387,"about_ca_topic_score_gemma":0.011329184,"teacher_disagreement_score":0.15306085,"about_ca_system_score_codex":0.0016211107,"about_ca_system_score_gemma":0.0013477388,"threshold_uncertainty_score":0.21832275},"labels":[],"label_agreement":null},{"id":"W4242822500","doi":"10.1016/s1535-9476(20)30973-7","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computational biology; Biology","score_opus":0.007542450073908759,"score_gpt":0.2042810107018286,"score_spread":0.19673856062791986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4242822500","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00059010147,0.0029859575,0.0019182159,0.009090434,0.027617535,0.00062135526,0.028767418,0.003883426,0.92452556],"genre_scores_gemma":[0.0025805135,0.0030677544,0.0012364654,0.0029615557,0.0039833034,0.00032415803,0.020573618,0.0011945539,0.9640782],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986386,0.00014153638,0.00010813766,0.00027837825,0.0005791201,0.00025422932],"domain_scores_gemma":[0.99610126,0.00023932898,0.00014796524,0.00038715632,0.0018000785,0.0013241906],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014335773,0.0012872356,0.0010973326,0.0029182672,0.0022101705,0.007855509,0.0023266664,0.002153205,0.83709186],"category_scores_gemma":[0.005786215,0.000434715,0.0008784232,0.0032260243,0.00046517825,0.0044905115,0.0035422326,0.0019578424,0.76865476],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031866923,0.000015411617,0.00009704058,0.00011422481,0.0000017907998,0.000027833712,0.000025110914,0.00002056067,0.00010299294,0.0022319015,0.96090496,0.03642635],"study_design_scores_gemma":[0.0000043021155,0.0000057093976,0.00014765456,0.00003545612,8.7929317e-7,0.000022832322,0.000030034997,0.000009814834,0.000027596905,0.00035130515,0.99936193,0.0000025509546],"about_ca_topic_score_codex":0.003519351,"about_ca_topic_score_gemma":0.004202178,"teacher_disagreement_score":0.16290814,"about_ca_system_score_codex":0.0018222706,"about_ca_system_score_gemma":0.0034226193,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4244329893","doi":"10.1016/s1535-9476(20)32691-8","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Diverse Scientific and Economic Studies","field":"Economics, Econometrics and Finance","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.01822266519774921,"score_gpt":0.1821356571472123,"score_spread":0.1639129919494631,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4244329893","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006731052,0.0023257479,0.0031208002,0.007505806,0.015754193,0.00064743997,0.03603571,0.007876698,0.9260606],"genre_scores_gemma":[0.003133452,0.0022936075,0.0019087683,0.0023110798,0.0020434163,0.0003355206,0.024287777,0.0021430235,0.96154326],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99868983,0.00016399162,0.000098520555,0.00026797375,0.0005661189,0.00021352018],"domain_scores_gemma":[0.9956529,0.00030777548,0.00016925175,0.0007052116,0.0018612004,0.0013036754],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016177393,0.0013277138,0.0011859658,0.0026146092,0.0022650182,0.00909501,0.0023272042,0.0019990907,0.8183969],"category_scores_gemma":[0.0068616103,0.0005599684,0.0009844069,0.0032727986,0.0005609906,0.0052762986,0.0040843654,0.002284422,0.7443817],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003842952,0.000016167256,0.00010319612,0.00010576694,0.0000021542505,0.000019800467,0.0000339802,0.00002650149,0.00011099016,0.0039967373,0.96088713,0.034659132],"study_design_scores_gemma":[0.0000046948817,0.0000054532265,0.00012695108,0.000023836235,9.1932327e-7,0.000015495836,0.000024280413,0.000014370353,0.000025864907,0.00054387207,0.9992113,0.0000029462815],"about_ca_topic_score_codex":0.0043401765,"about_ca_topic_score_gemma":0.0045790887,"teacher_disagreement_score":0.18160307,"about_ca_system_score_codex":0.0021892397,"about_ca_system_score_gemma":0.003185533,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4244843726","doi":"10.1016/s1535-9476(20)34455-8","title":"Calendar","year":2003,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Computational biology; Biology","score_opus":0.008818901963241626,"score_gpt":0.1988734551948476,"score_spread":0.19005455323160597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4244843726","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00045626189,0.0019145659,0.0013283228,0.006794504,0.025548339,0.00070806395,0.027419388,0.0041811187,0.93164957],"genre_scores_gemma":[0.0013346341,0.0013402123,0.00077346264,0.0016958918,0.0028166391,0.0002671489,0.012553227,0.0013093593,0.97790945],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99877316,0.00012694662,0.00009141529,0.00024804458,0.00051742996,0.00024299978],"domain_scores_gemma":[0.99511224,0.00026924766,0.00015785922,0.00051813433,0.0020776389,0.0018649218],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016142527,0.0014070027,0.0014501514,0.0030974387,0.0026403465,0.00962338,0.0024264846,0.0020272068,0.8718465],"category_scores_gemma":[0.0061962334,0.0005286333,0.00090253045,0.0040591117,0.00044453648,0.004451314,0.0037067195,0.002212244,0.8338943],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021824502,0.000012238117,0.000047764795,0.000052956544,8.9460815e-7,0.000013044689,0.000013740225,0.000010234296,0.00004874516,0.00091868296,0.97970104,0.019158725],"study_design_scores_gemma":[0.0000052190703,0.00000518799,0.00016275723,0.000026397189,6.4429736e-7,0.000012307072,0.00002992406,0.000009534251,0.000018189126,0.00023678124,0.9994905,0.00000254722],"about_ca_topic_score_codex":0.0040727598,"about_ca_topic_score_gemma":0.00585188,"teacher_disagreement_score":0.1281535,"about_ca_system_score_codex":0.0018335632,"about_ca_system_score_gemma":0.003098667,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4246009979","doi":"10.1016/s1535-9476(20)31517-6","title":"Calendar","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Diverse Scientific and Economic Studies","field":"Economics, Econometrics and Finance","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chemistry; Computational biology; Biology","score_opus":0.012463185552044955,"score_gpt":0.16472027957929475,"score_spread":0.1522570940272498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4246009979","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00066037854,0.0027475408,0.0024129443,0.007500278,0.016291087,0.0004797635,0.02860666,0.0050771637,0.93622416],"genre_scores_gemma":[0.0026588151,0.0022279145,0.0012907492,0.0025198832,0.0021661774,0.00024525155,0.019535305,0.001356041,0.9679998],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99882907,0.00012941989,0.000096924356,0.00025380685,0.00050912274,0.00018160047],"domain_scores_gemma":[0.99653935,0.00028602628,0.0001344963,0.0005347845,0.0015703477,0.0009349953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011933031,0.0010658574,0.0011001596,0.002600087,0.0019755804,0.0070797224,0.0022252111,0.0019281097,0.83245075],"category_scores_gemma":[0.0055332147,0.00040169372,0.000724534,0.003307279,0.00048029743,0.0040714154,0.0035654572,0.0017710514,0.7707307],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036566387,0.000015489944,0.00010796377,0.00010187549,0.0000018436431,0.000030801908,0.000030734245,0.000020998106,0.000122427,0.0033268589,0.9523066,0.043897748],"study_design_scores_gemma":[0.000003513057,0.0000045900465,0.00011090406,0.000026265714,7.363978e-7,0.000023327882,0.000024432797,0.000009456189,0.00003164225,0.0004046646,0.99935836,0.0000021532717],"about_ca_topic_score_codex":0.0026652124,"about_ca_topic_score_gemma":0.0030097738,"teacher_disagreement_score":0.83245075,"about_ca_system_score_codex":0.0017304214,"about_ca_system_score_gemma":0.0023942182,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4246056256","doi":"10.1074/mcp.p800001-mcp200","title":"Calendar","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Chemistry","score_opus":0.01563602921773039,"score_gpt":0.19587266696555214,"score_spread":0.18023663774782175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4246056256","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00060929335,0.002545296,0.002024887,0.009173653,0.027563972,0.0008061152,0.039797407,0.005253672,0.91222566],"genre_scores_gemma":[0.0024431401,0.0023838063,0.0013405618,0.0027463255,0.0035927456,0.00045007697,0.023104964,0.0016596763,0.9622787],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984669,0.0001748936,0.00012956398,0.0003070049,0.00062516757,0.0002964386],"domain_scores_gemma":[0.994476,0.00036944324,0.00020070159,0.00062463677,0.0025083465,0.0018208514],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016588105,0.0013284828,0.001213062,0.0032125087,0.0024521342,0.008853219,0.0024329582,0.002016194,0.83150965],"category_scores_gemma":[0.008068713,0.000536741,0.0008353024,0.0040011615,0.00048869255,0.004792628,0.0041630464,0.0020958062,0.7712938],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024891458,0.000011567921,0.00007080976,0.00006878049,0.0000010662251,0.000014016476,0.000019537416,0.000014104372,0.000051121126,0.001265616,0.9733986,0.02505994],"study_design_scores_gemma":[0.0000047837093,0.0000049252776,0.00017699474,0.000030582374,6.927493e-7,0.000013891078,0.000030874453,0.000010039118,0.00001922925,0.00029205752,0.99941325,0.0000027572266],"about_ca_topic_score_codex":0.0041139773,"about_ca_topic_score_gemma":0.0051441165,"teacher_disagreement_score":0.16849035,"about_ca_system_score_codex":0.0018357779,"about_ca_system_score_gemma":0.003424531,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4247631953","doi":"10.1016/s1535-9476(20)31245-7","title":"Calendar","year":2008,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chemistry","score_opus":0.01563602921773039,"score_gpt":0.19587266696555214,"score_spread":0.18023663774782175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4247631953","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00055265473,0.0020901016,0.0018959653,0.006189614,0.016283505,0.0006376396,0.03646553,0.005104898,0.93078005],"genre_scores_gemma":[0.002520515,0.0023469438,0.0014635919,0.0022144772,0.002896185,0.00035458687,0.024363343,0.0017409242,0.9620994],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99853635,0.00016527007,0.00013103122,0.00028572098,0.0006383696,0.00024322407],"domain_scores_gemma":[0.99490404,0.00038907764,0.00022405222,0.0006594034,0.0022204071,0.0016029853],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001592471,0.0012941252,0.0012130314,0.0033581564,0.002381425,0.0093429675,0.002217817,0.001783454,0.8301992],"category_scores_gemma":[0.0075632124,0.00052937097,0.00076820806,0.004376546,0.0004967194,0.0050348523,0.0036316223,0.0018873367,0.778294],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033473112,0.00001519528,0.0000867264,0.00008558964,0.0000013351986,0.000018729143,0.000022557255,0.000019544963,0.00007251973,0.0020979736,0.96634775,0.031198489],"study_design_scores_gemma":[0.000004819568,0.0000045761662,0.00013974567,0.000023577628,6.6793433e-7,0.000016637954,0.000023573783,0.000010117177,0.00002019937,0.00032528548,0.9994282,0.000002489737],"about_ca_topic_score_codex":0.003918293,"about_ca_topic_score_gemma":0.0042961193,"teacher_disagreement_score":0.16980082,"about_ca_system_score_codex":0.0017860637,"about_ca_system_score_gemma":0.0031028516,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4248627220","doi":"10.1016/s1535-9476(20)31697-2","title":"Calendar","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Chemistry","score_opus":0.00789144916846119,"score_gpt":0.2176171785483987,"score_spread":0.20972572937993753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248627220","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00053631276,0.0025474525,0.0015479545,0.008930413,0.029866789,0.00063457206,0.02768054,0.004148127,0.9241079],"genre_scores_gemma":[0.001817489,0.0018772839,0.00084700953,0.0024524033,0.0038178933,0.0002796001,0.014883857,0.0011707597,0.9728538],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986965,0.00013253104,0.00010513616,0.00026590252,0.0005602927,0.00023968493],"domain_scores_gemma":[0.9949656,0.00032710767,0.00019203899,0.00058403966,0.0021949213,0.0017362993],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014211898,0.0012634908,0.0012466166,0.003267808,0.0023327842,0.008275854,0.0021110415,0.0019741002,0.8439312],"category_scores_gemma":[0.006690626,0.00046456564,0.0008297801,0.0037009143,0.00047549087,0.0043129693,0.0036701388,0.0020840268,0.7959985],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026900329,0.000012554083,0.000070161426,0.00006949165,0.0000011446543,0.000018656501,0.000016787977,0.000015443053,0.00006936571,0.0014621078,0.9725301,0.025707293],"study_design_scores_gemma":[0.000004351188,0.0000048416136,0.00016012609,0.000028327484,6.3214964e-7,0.00001664458,0.000023599889,0.000009324617,0.000020831912,0.0002801542,0.9994487,0.0000024293445],"about_ca_topic_score_codex":0.0031668926,"about_ca_topic_score_gemma":0.0037269173,"teacher_disagreement_score":0.1560688,"about_ca_system_score_codex":0.0017747715,"about_ca_system_score_gemma":0.0028858753,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4249898128","doi":"10.1016/s1535-9476(20)30398-4","title":"Calendar","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.004545576903112198,"score_gpt":0.17940536877754368,"score_spread":0.17485979187443149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4249898128","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00056381803,0.0021792292,0.0022719698,0.008459505,0.016284551,0.0006773728,0.04072147,0.0045741093,0.92426795],"genre_scores_gemma":[0.0023660802,0.0022961558,0.0016472948,0.0028058786,0.0022811536,0.00046842353,0.02870378,0.0014788444,0.9579524],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978229,0.00024572632,0.00019707004,0.0004207277,0.0009294811,0.00038412024],"domain_scores_gemma":[0.9926122,0.00046087574,0.00026940028,0.0011037977,0.0035428433,0.0020108102],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0024881186,0.0013238657,0.0012431476,0.003735184,0.0025051988,0.009241548,0.0029158972,0.0025361448,0.8141603],"category_scores_gemma":[0.009899134,0.0005632293,0.00094101875,0.0047023674,0.0004918707,0.005491066,0.0044787177,0.002311876,0.782034],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026330576,0.000016179632,0.00012852186,0.00008234393,0.0000018897741,0.000019014878,0.000022651666,0.000012932367,0.000060040948,0.0022208323,0.9642309,0.033178348],"study_design_scores_gemma":[0.0000045230545,0.00000438755,0.00020463462,0.00003384729,0.0000010201433,0.00001940562,0.000026236854,0.000011531061,0.0000199573,0.00034637187,0.99932516,0.0000029610599],"about_ca_topic_score_codex":0.006265765,"about_ca_topic_score_gemma":0.0064102863,"teacher_disagreement_score":0.18583971,"about_ca_system_score_codex":0.0020729543,"about_ca_system_score_gemma":0.0047361394,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4250258109","doi":"10.1016/s1535-9476(20)31974-5","title":"Calendar","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Computational biology; Biology","score_opus":0.006703620598381294,"score_gpt":0.24631857159533035,"score_spread":0.23961495099694907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4250258109","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000688381,0.003345597,0.0012283339,0.010503361,0.022825867,0.00037871825,0.02766143,0.0025142676,0.9308539],"genre_scores_gemma":[0.0021066747,0.0020330807,0.00071052933,0.0018343999,0.0016706703,0.00014542171,0.0128021585,0.000749884,0.97794706],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984535,0.0001431531,0.000111606045,0.00027449703,0.00073124625,0.0002859224],"domain_scores_gemma":[0.99407756,0.00036610352,0.00019034052,0.00063435925,0.0030120525,0.0017196907],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016632164,0.0009786362,0.0011303896,0.0032358372,0.0025192641,0.0077803745,0.002101401,0.0019451791,0.7892814],"category_scores_gemma":[0.007046322,0.0004504598,0.0006571991,0.004363695,0.0005395166,0.00367231,0.0026529145,0.0020467443,0.6948719],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027722082,0.000010099083,0.00007976315,0.00006221008,0.0000012479082,0.000015593123,0.000018799139,0.000012865976,0.000049774084,0.002053658,0.96914375,0.028524464],"study_design_scores_gemma":[0.000002771481,0.0000031921095,0.00021596567,0.00002272301,5.2628155e-7,0.0000144150135,0.000026418746,0.0000074927602,0.000015851905,0.0002428422,0.9994456,0.0000021009848],"about_ca_topic_score_codex":0.012760209,"about_ca_topic_score_gemma":0.0150375785,"teacher_disagreement_score":0.21071857,"about_ca_system_score_codex":0.0029262004,"about_ca_system_score_gemma":0.004565706,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4250630625","doi":"10.1016/s1535-9476(20)33866-4","title":"Calendar","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Computational biology; Biology","score_opus":0.007743235621649673,"score_gpt":0.19994718384215332,"score_spread":0.19220394822050366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4250630625","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00046357355,0.0028712216,0.0017527749,0.0076703597,0.023440091,0.0005914645,0.027963184,0.0040229405,0.9312244],"genre_scores_gemma":[0.0021884153,0.0027743396,0.0011109001,0.0027539707,0.0039020425,0.0002983538,0.019738177,0.001384108,0.96584964],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988117,0.00012693771,0.00009265615,0.00025324975,0.00049133797,0.00022407238],"domain_scores_gemma":[0.99579984,0.00027536895,0.0001530836,0.0004585554,0.0018665645,0.0014465515],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012667069,0.0012763762,0.001290981,0.0030590654,0.0023275344,0.00864607,0.002340826,0.0020150507,0.8630368],"category_scores_gemma":[0.0060994,0.00046206592,0.0008400124,0.0037298521,0.0004383171,0.0046878993,0.003303146,0.0019145629,0.80196244],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002774907,0.000012456278,0.00007098675,0.00008938872,0.0000012884539,0.000020330212,0.00001798116,0.000015377707,0.000073774296,0.001574492,0.9672789,0.030817194],"study_design_scores_gemma":[0.0000045908646,0.000004280577,0.00012836441,0.000031836873,8.2060427e-7,0.000018624041,0.000025075586,0.000010059456,0.000023082743,0.0003013681,0.9994497,0.0000023664852],"about_ca_topic_score_codex":0.003830063,"about_ca_topic_score_gemma":0.0048105996,"teacher_disagreement_score":0.13696319,"about_ca_system_score_codex":0.0017004602,"about_ca_system_score_gemma":0.0030037744,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4253478879","doi":"10.1016/s1535-9476(20)33413-7","title":"Calendar","year":2004,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Educational Robotics and Engineering","field":"Computer Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Computational biology; Biology","score_opus":0.005141254392804053,"score_gpt":0.1906545899005191,"score_spread":0.18551333550771504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4253478879","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006380707,0.0035909335,0.0024263386,0.011451997,0.040183175,0.00068117137,0.027847467,0.0035384235,0.90964246],"genre_scores_gemma":[0.0020076942,0.002357816,0.0013573342,0.0026957693,0.0028948926,0.00032084927,0.016050728,0.0012438085,0.97107106],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99827135,0.00019261861,0.00012796801,0.00037545915,0.0007106512,0.00032191936],"domain_scores_gemma":[0.9954917,0.00026876887,0.00014339986,0.0005506229,0.002067615,0.0014780245],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0023599414,0.0012869193,0.0012954095,0.0027649808,0.0021649182,0.009078724,0.0031149476,0.0026080343,0.80346626],"category_scores_gemma":[0.007173264,0.0005120531,0.0010294052,0.0031119715,0.0005536439,0.005229658,0.004431951,0.002341002,0.7302328],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030406016,0.000014851729,0.00006701721,0.00009514217,0.0000019615402,0.000021728645,0.000021358179,0.000019375593,0.00009550844,0.0028573754,0.9691836,0.02759157],"study_design_scores_gemma":[0.0000040705486,0.0000048089337,0.00013548965,0.00003588489,7.991739e-7,0.000015448286,0.000025938158,0.000009183828,0.00002878426,0.00034430824,0.99939275,0.000002573882],"about_ca_topic_score_codex":0.0038408611,"about_ca_topic_score_gemma":0.0043210327,"teacher_disagreement_score":0.19653374,"about_ca_system_score_codex":0.002132707,"about_ca_system_score_gemma":0.0040253676,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4253736076","doi":"10.1016/s1535-9476(20)34180-3","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Diverse Scientific and Economic Studies","field":"Economics, Econometrics and Finance","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Computational biology; Biology","score_opus":0.01822266519774921,"score_gpt":0.1821356571472123,"score_spread":0.1639129919494631,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4253736076","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006731052,0.0023257479,0.0031208002,0.007505806,0.015754193,0.00064743997,0.03603571,0.007876698,0.9260606],"genre_scores_gemma":[0.003133452,0.0022936075,0.0019087683,0.0023110798,0.0020434163,0.0003355206,0.024287777,0.0021430235,0.96154326],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99868983,0.00016399162,0.000098520555,0.00026797375,0.0005661189,0.00021352018],"domain_scores_gemma":[0.9956529,0.00030777548,0.00016925175,0.0007052116,0.0018612004,0.0013036754],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016177393,0.0013277138,0.0011859658,0.0026146092,0.0022650182,0.00909501,0.0023272042,0.0019990907,0.8183969],"category_scores_gemma":[0.0068616103,0.0005599684,0.0009844069,0.0032727986,0.0005609906,0.0052762986,0.0040843654,0.002284422,0.7443817],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003842952,0.000016167256,0.00010319612,0.00010576694,0.0000021542505,0.000019800467,0.0000339802,0.00002650149,0.00011099016,0.0039967373,0.96088713,0.034659132],"study_design_scores_gemma":[0.0000046948817,0.0000054532265,0.00012695108,0.000023836235,9.1932327e-7,0.000015495836,0.000024280413,0.000014370353,0.000025864907,0.00054387207,0.9992113,0.0000029462815],"about_ca_topic_score_codex":0.0043401765,"about_ca_topic_score_gemma":0.0045790887,"teacher_disagreement_score":0.18160307,"about_ca_system_score_codex":0.0021892397,"about_ca_system_score_gemma":0.003185533,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4254172433","doi":"10.1016/s1535-9476(20)31440-7","title":"Calendar","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.00789144916846119,"score_gpt":0.2176171785483987,"score_spread":0.20972572937993753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254172433","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006436409,0.0017850366,0.0030082678,0.0069082296,0.0135402605,0.0006247094,0.050713886,0.0096694995,0.9131065],"genre_scores_gemma":[0.002630832,0.0017489146,0.0020134193,0.0026184544,0.002333479,0.00039276533,0.033146884,0.0032469246,0.9518684],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99854654,0.00017675913,0.000121092424,0.00028903323,0.0006454042,0.00022113635],"domain_scores_gemma":[0.9945057,0.00053690263,0.00022621771,0.00083177414,0.00231674,0.001582624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016475337,0.0012624454,0.0012590819,0.0035133993,0.002313303,0.00877691,0.002463982,0.001995173,0.8602716],"category_scores_gemma":[0.008772492,0.00056223036,0.00091274414,0.0043228404,0.0005103676,0.0054481686,0.0039988155,0.0020859127,0.8179291],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030183155,0.0000142895815,0.000084514264,0.00008193332,0.0000014782215,0.000019281437,0.000027020134,0.000018283261,0.000066240354,0.0018285825,0.96842515,0.029403066],"study_design_scores_gemma":[0.0000045607167,0.0000042901,0.00013773478,0.00002663615,7.602963e-7,0.000018547138,0.000026052594,0.000013542073,0.000023703904,0.00038920375,0.9993518,0.00000306192],"about_ca_topic_score_codex":0.003338706,"about_ca_topic_score_gemma":0.0038734514,"teacher_disagreement_score":0.8602716,"about_ca_system_score_codex":0.0017334024,"about_ca_system_score_gemma":0.0027320762,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4254229621","doi":"10.1074/mcp.m000052-mcp201","title":"Physiological Adaptation of the Bacterium Lactococcus lactis in Response to the Production of Human CFTR","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Regional Development Fund; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Rijksuniversiteit Groningen; Johns Hopkins University; European Commission; Cystic Fibrosis Foundation Therapeutics; University of Toronto; Cystic Fibrosis Foundation","keywords":"Lactococcus lactis; Proteome; Membrane protein; Cystic fibrosis transmembrane conductance regulator; Biology; Vesicle-associated membrane protein 8; Cell biology; Biochemistry; Chemistry; Quantitative proteomics; Transmembrane protein; Bacteria; Proteomics; Membrane; Gene","score_opus":0.01767235724804316,"score_gpt":0.2856024862675029,"score_spread":0.26793012901945973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254229621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995465,0.0010096576,0.001875562,0.0003545743,0.00004395069,0.000026382322,0.0003791555,0.00016204809,0.00068377797],"genre_scores_gemma":[0.9938128,0.00054328755,0.0033780737,0.00016941619,0.000012921518,0.000026988451,0.000620957,0.00005005226,0.0013854909],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997002,0.00005913409,0.000037102134,0.00006226417,0.000091987036,0.00004935093],"domain_scores_gemma":[0.9998524,0.00002897104,0.000034874163,0.00002369717,0.000024916075,0.000035023215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016738934,0.0002622498,0.00035754044,0.00013561205,0.00012913228,0.0005474991,0.00014571841,0.0002579811,0.00042861458],"category_scores_gemma":[0.00033787746,0.00012404603,0.00020639591,0.00014046524,0.00017526279,0.00019075823,0.00043177043,0.0005287626,0.0003587609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000370255,0.0000143937905,0.00019170319,0.00001536576,0.0000016601607,0.000035848134,0.000018184406,0.000020354772,0.99925214,0.000013776761,0.000024410216,0.0003751144],"study_design_scores_gemma":[0.000006520368,0.0003110796,0.008023431,0.000008639039,0.000010233443,0.0005406444,0.000101848265,0.00085551466,0.98831266,0.000050896917,0.0017648163,0.00001372342],"about_ca_topic_score_codex":0.0013212583,"about_ca_topic_score_gemma":0.00081403967,"teacher_disagreement_score":0.0013212583,"about_ca_system_score_codex":0.0003654999,"about_ca_system_score_gemma":0.0002122981,"threshold_uncertainty_score":0.0026518703},"labels":[],"label_agreement":null},{"id":"W4254546891","doi":"10.1016/s1535-9476(20)34778-2","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.007542450073908759,"score_gpt":0.2042810107018286,"score_spread":0.19673856062791986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254546891","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00047901098,0.00270214,0.001579771,0.009930409,0.039135564,0.00077257527,0.025898958,0.004042766,0.9154589],"genre_scores_gemma":[0.0019294809,0.0024049033,0.0010092239,0.003032839,0.005705243,0.00034249254,0.016154362,0.0012319371,0.96818966],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987909,0.0001184461,0.000095110605,0.0002497652,0.00051447994,0.00023125646],"domain_scores_gemma":[0.99543154,0.0002513761,0.00016079021,0.00041841873,0.0019857525,0.0017520962],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014041789,0.0013458566,0.0013409212,0.002948877,0.0023645803,0.008363764,0.0023074842,0.0020325747,0.86014473],"category_scores_gemma":[0.005993042,0.0004683928,0.0009111367,0.0032849854,0.00043260466,0.004437214,0.0035750635,0.0021453816,0.80078226],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000255734,0.000013511134,0.000059042977,0.00007983008,0.0000011665874,0.000016837776,0.0000145649765,0.000013063296,0.00007420318,0.0012145395,0.97140944,0.027078198],"study_design_scores_gemma":[0.000004999742,0.00000551843,0.00013852621,0.00003099962,7.766008e-7,0.00001587226,0.000024839746,0.0000094776415,0.000022797036,0.00027858,0.99946517,0.0000025017487],"about_ca_topic_score_codex":0.002944523,"about_ca_topic_score_gemma":0.0038096881,"teacher_disagreement_score":0.13985527,"about_ca_system_score_codex":0.0016715283,"about_ca_system_score_gemma":0.003023402,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4254966646","doi":"10.1016/s1535-9476(20)30038-4","title":"Calendar","year":2005,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.007542450073908759,"score_gpt":0.2042810107018286,"score_spread":0.19673856062791986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254966646","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00048419,0.0019111154,0.0014773603,0.005001741,0.011677969,0.0005054099,0.03540532,0.0029551547,0.9405818],"genre_scores_gemma":[0.00198907,0.0018807227,0.0009621364,0.0018785313,0.0014431496,0.00024897544,0.019185288,0.0009824621,0.97142977],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99893266,0.00011061287,0.000079742924,0.00022347654,0.0004784931,0.0001749984],"domain_scores_gemma":[0.99639195,0.00025105008,0.00015121952,0.00041136556,0.0018302791,0.000964184],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011053939,0.0011145103,0.00088795216,0.0029281056,0.002382551,0.0073695816,0.0022574156,0.0016982703,0.82606244],"category_scores_gemma":[0.0053139264,0.0004576227,0.0006649237,0.004289342,0.00041676633,0.0042879065,0.002766147,0.0018370085,0.7547644],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021806603,0.000011852641,0.000088676694,0.00007921488,0.0000012641864,0.000021559457,0.000022383147,0.000018445002,0.0000584673,0.0019564454,0.9678964,0.029823363],"study_design_scores_gemma":[0.0000027828985,0.0000031065913,0.00013095731,0.00002312312,5.7975177e-7,0.000016950748,0.000023596169,0.000009669416,0.000021425098,0.00024699265,0.999519,0.0000017954914],"about_ca_topic_score_codex":0.0067573064,"about_ca_topic_score_gemma":0.0075979442,"teacher_disagreement_score":0.17393756,"about_ca_system_score_codex":0.0019795087,"about_ca_system_score_gemma":0.0036880053,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4255961614","doi":"10.1074/s1535-9476(20)30719-2","title":"Calendar","year":2006,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Human auditory perception and evaluation","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.004545576903112198,"score_gpt":0.17940536877754368,"score_spread":0.17485979187443149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4255961614","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004918841,0.0020972497,0.0017355137,0.00857078,0.031192714,0.00056913635,0.017932305,0.0039396444,0.93347085],"genre_scores_gemma":[0.0021195295,0.0016115351,0.0010754217,0.0024267882,0.004177067,0.00027837115,0.011445552,0.0013287339,0.97553706],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987804,0.00013050785,0.00008549996,0.00024597952,0.00052386,0.00023368384],"domain_scores_gemma":[0.99594563,0.00024362473,0.00014031453,0.0004596688,0.001687841,0.001522983],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013450679,0.0013003672,0.001230496,0.0026659032,0.0022626745,0.007780319,0.0023730586,0.0021434021,0.8723375],"category_scores_gemma":[0.005608954,0.00046372964,0.0008680278,0.002759341,0.00043780787,0.0043089148,0.0040913383,0.0021057413,0.7897537],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025026988,0.000012692776,0.000053216645,0.000072195326,0.000001344534,0.000017670305,0.00002022783,0.000015371566,0.00008532705,0.0015929611,0.9700688,0.028035188],"study_design_scores_gemma":[0.0000040112295,0.0000050858425,0.00012588043,0.000027679227,6.6808065e-7,0.000014439083,0.000029510644,0.000009967933,0.000023037925,0.0002911227,0.999466,0.0000024229632],"about_ca_topic_score_codex":0.0025996456,"about_ca_topic_score_gemma":0.0036519123,"teacher_disagreement_score":0.12766248,"about_ca_system_score_codex":0.0018156767,"about_ca_system_score_gemma":0.002750502,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4256574089","doi":"10.1016/s1535-9476(20)32164-2","title":"Calendar","year":2007,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science","score_opus":0.006290264478107105,"score_gpt":0.23247321283461597,"score_spread":0.22618294835650887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4256574089","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00054027984,0.0025102773,0.0018829263,0.009822254,0.035306416,0.0008086711,0.03183523,0.004650103,0.91264373],"genre_scores_gemma":[0.0019892545,0.002209363,0.0012248022,0.0028497623,0.0045500393,0.00034994888,0.01865424,0.0013472959,0.96682537],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986212,0.00013868236,0.000113815964,0.00027716917,0.0006100278,0.00023914744],"domain_scores_gemma":[0.9943657,0.0003697408,0.00020737365,0.00057358266,0.0026152623,0.0018683735],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016031013,0.0012415035,0.0012619057,0.0032920295,0.0023479147,0.008481069,0.002316567,0.001878725,0.84521973],"category_scores_gemma":[0.0077248104,0.00044797963,0.00086610194,0.0038169483,0.0004729144,0.004334127,0.0033803359,0.0019510727,0.7922454],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002618245,0.0000124968055,0.00006433212,0.00007631006,0.0000011035697,0.000016684691,0.000015865837,0.000013682985,0.00006337565,0.0013652589,0.97165585,0.026688883],"study_design_scores_gemma":[0.0000050412045,0.0000054178645,0.00014426692,0.000029399996,7.042382e-7,0.000017179182,0.000027157665,0.000009133823,0.00002230865,0.00028602712,0.99945086,0.0000024775618],"about_ca_topic_score_codex":0.0030273627,"about_ca_topic_score_gemma":0.0035937303,"teacher_disagreement_score":0.15478027,"about_ca_system_score_codex":0.0016346858,"about_ca_system_score_gemma":0.00304581,"threshold_uncertainty_score":0},"labels":[],"label_agreement":null},{"id":"W4280539677","doi":"10.1016/j.mcpro.2022.100234","title":"Immunopeptidomics: Reading the Immune Signal That Defines Self From Nonself","year":2022,"lang":"en","type":"editorial","venue":"Molecular & Cellular Proteomics","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Cancer Society; Genome Canada","keywords":"Major histocompatibility complex; Biology; MHC restriction; Antigen; Immune system; MHC class I; T-cell receptor; Cell biology; Immunology; T cell","score_opus":0.006367988743721537,"score_gpt":0.19808420136810007,"score_spread":0.19171621262437852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280539677","genre_codex":"review","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0028358914,0.66185695,0.013033704,0.12805657,0.15550767,0.00006113538,0.000409603,0.0006106808,0.03762779],"genre_scores_gemma":[0.046380382,0.6262374,0.016062282,0.08338244,0.15025982,0.00024927274,0.0008980013,0.0008706591,0.07565967],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994517,0.00019898714,0.00004472535,0.00007121522,0.00019320827,0.000040160583],"domain_scores_gemma":[0.9982089,0.0009877027,0.00013734025,0.00009945522,0.00030630536,0.00026035446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017667675,0.000980621,0.00077953323,0.0025034333,0.0011091558,0.0027427985,0.0011225044,0.0025213368,0.010870545],"category_scores_gemma":[0.0036403304,0.00037325898,0.0003751536,0.0009872152,0.004950919,0.008203825,0.0018289813,0.006165312,0.0047744587],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026938866,0.0000651672,0.00037100766,0.0026082287,0.00004288807,0.00079833216,0.0018937258,0.000154465,0.009560259,0.11099083,0.54335386,0.32989186],"study_design_scores_gemma":[0.000011176953,0.000028311004,0.00021160905,0.0004120942,0.000008998691,0.00039592406,0.00030361066,0.000032438427,0.00081262365,0.019011257,0.9787612,0.000010703752],"about_ca_topic_score_codex":0.00088852004,"about_ca_topic_score_gemma":0.0013727387,"teacher_disagreement_score":0.010870545,"about_ca_system_score_codex":0.0013053562,"about_ca_system_score_gemma":0.000981538,"threshold_uncertainty_score":0.03636563},"labels":[],"label_agreement":null},{"id":"W4282915695","doi":"10.1016/j.mcpro.2022.100253","title":"MRG Proteins Are Shared by Multiple Protein Complexes With Distinct Functions","year":2022,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto; Canadian Institutes of Health Research; Fondation du cancer du sein du Québec; Cancer Research Society","keywords":"Chemistry; Computational biology; Cell biology; Biology","score_opus":0.006866183814130814,"score_gpt":0.18003374948260198,"score_spread":0.17316756566847116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282915695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9757475,0.012534271,0.0077072848,0.00031127495,0.000073753225,0.00003691382,0.0008084876,0.00061612576,0.0021642968],"genre_scores_gemma":[0.98467374,0.0018234913,0.006574079,0.00019112385,0.00002847062,0.00003585345,0.002437803,0.000064078566,0.004171333],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974996,0.00002305023,0.00001795818,0.000118364165,0.00004890771,0.000041738534],"domain_scores_gemma":[0.999881,0.0000062550143,0.00004354916,0.000018247949,0.000013152809,0.000037845835],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014859246,0.00064494443,0.0003579357,0.0005142047,0.00023901297,0.0004977455,0.00045759257,0.0004932092,0.0014775532],"category_scores_gemma":[0.00016111216,0.00021595723,0.0004574406,0.00045565673,0.0002710396,0.00036866716,0.00056328485,0.000307492,0.0012295236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003157023,0.000016674392,0.0035068751,0.00015989206,0.000067629706,0.00055505405,0.00008029365,0.00009255679,0.98663956,0.0006576627,0.0003840501,0.0075240172],"study_design_scores_gemma":[0.000117577765,0.0004730329,0.12733957,0.00006449424,0.00021147594,0.011302136,0.00032139482,0.003036911,0.7661688,0.0012621569,0.089642555,0.000059979466],"about_ca_topic_score_codex":0.00043638743,"about_ca_topic_score_gemma":0.00042033152,"teacher_disagreement_score":0.0014775532,"about_ca_system_score_codex":0.0004688893,"about_ca_system_score_gemma":0.00009984335,"threshold_uncertainty_score":0.0049428344},"labels":[],"label_agreement":null},{"id":"W4289526446","doi":"10.1016/j.mcpro.2022.100277","title":"Early Prediction of COVID-19 Patient Survival by Targeted Plasma Multi-Omics and Machine Learning","year":2022,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of Victoria; McGill University","funders":"Warren Y. Soper Charitable Trust; Fondation De Famille Alvin Segal; Jewish General Hospital; Ministry of Education and Science of the Russian Federation; Public Health Agency; Génome Québec; Genome British Columbia; National Cancer Institute; Ministère de l'Économie, de l’Innovation et des Exportations du Québec; Public Health Agency of Canada; McGill University; Ministry of Science and Higher Education of the Russian Federation; Fonds de recherche du Québec; Skolkovo Institute of Science and Technology; Genome Canada","keywords":"Coronavirus disease 2019 (COVID-19); Omics; Medicine; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Receiver operating characteristic; 2019-20 coronavirus outbreak; Computational biology; Internal medicine; Bioinformatics; Disease; Intensive care medicine; Biology; Virology; Infectious disease (medical specialty)","score_opus":0.011425096267766026,"score_gpt":0.2092569433646982,"score_spread":0.19783184709693216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289526446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9712876,0.0013814358,0.024426164,0.00039153078,0.000045100707,0.00004990327,0.0015644982,0.00026416738,0.00058943173],"genre_scores_gemma":[0.98773754,0.00036261135,0.010529396,0.000109313376,0.000032554173,0.000021637226,0.0010028754,0.000010855452,0.00019323711],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9997259,0.00009348393,0.000025731948,0.00007400536,0.00004071294,0.00004009069],"domain_scores_gemma":[0.99950933,0.00016357195,0.00017420198,0.000037481022,0.000054418084,0.000060908176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006477945,0.0006489361,0.0005981187,0.000671211,0.0001660535,0.0006460207,0.00020191734,0.00040778218,0.00047771973],"category_scores_gemma":[0.001199734,0.00010768483,0.00037325098,0.00043578673,0.00014633637,0.0003056629,0.00040767706,0.0005815831,0.00021239831],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016078938,0.0003141201,0.8314978,0.00013738473,0.00032428626,0.00048125436,0.0001313848,0.008463851,0.08621198,0.00039169154,0.0012347964,0.06920359],"study_design_scores_gemma":[0.000053367356,0.0017363244,0.74211633,0.00007401386,0.00027163065,0.0012022563,0.00027764583,0.19800174,0.051203858,0.002509703,0.002479537,0.000073572046],"about_ca_topic_score_codex":0.0006670449,"about_ca_topic_score_gemma":0.0010524949,"teacher_disagreement_score":0.000671211,"about_ca_system_score_codex":0.00023359041,"about_ca_system_score_gemma":0.0002965785,"threshold_uncertainty_score":0.0034258962},"labels":[],"label_agreement":null},{"id":"W4295008295","doi":"10.1016/j.mcpro.2022.100411","title":"The in vivo Interaction Landscape of Histones H3.1 and H3.3","year":2022,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; SickKids Foundation; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Cure Starts Now Foundation; Canadian Cancer Society; ChadTough Foundation","keywords":"Chromatin; Histone H3; Biology; Histone; Histone code; Replication timing; Cell biology; Interactome; Computational biology; DNA replication; Genetics; Histone H2A; Nucleosome; DNA; Gene","score_opus":0.004176986097677608,"score_gpt":0.2048743735925271,"score_spread":0.2006973874948495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4295008295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97185135,0.0029040761,0.022336833,0.00015391361,0.000017286855,0.000010897578,0.00062201056,0.00008537272,0.0020183376],"genre_scores_gemma":[0.9929898,0.0006544715,0.004529514,0.00007038088,0.0000073862175,0.000012823496,0.0004793242,0.000025600819,0.0012307235],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998192,0.000020718991,0.0000054351935,0.000071369934,0.00005308505,0.000030209387],"domain_scores_gemma":[0.99988186,0.000032348664,0.000034796158,0.000015269095,0.000016464075,0.000019194047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018852329,0.00017182548,0.00014225676,0.00023752339,0.00037637947,0.00044128322,0.00019935412,0.0003119522,0.0009842325],"category_scores_gemma":[0.00026118933,0.0001755508,0.00014818819,0.00022481792,0.00027494362,0.00031653862,0.00034814046,0.00032043786,0.00037555493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006231385,0.0000044429617,0.0022790027,0.000018180233,0.000010411098,0.000019646237,0.000019598181,0.000051181432,0.9958496,0.00019422102,0.000034701177,0.001456587],"study_design_scores_gemma":[0.0000057991465,0.00006675747,0.053415675,0.000004442325,0.000030783074,0.0003741637,0.00010796013,0.0016332422,0.94012517,0.00047048228,0.0037560416,0.0000094456755],"about_ca_topic_score_codex":0.0015694869,"about_ca_topic_score_gemma":0.0032707371,"teacher_disagreement_score":0.0015694869,"about_ca_system_score_codex":0.00035791422,"about_ca_system_score_gemma":0.00022895965,"threshold_uncertainty_score":0.0032925606},"labels":[],"label_agreement":null},{"id":"W4307568971","doi":"10.1016/j.mcpro.2022.100436","title":"The Second Asia-Oceania Human Proteome Organization (AOHUPO) Online Education Series on the Renaissance of Clinical Proteomics: Biomarkers, Imaging and Therapeutics","year":2022,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Yonsei University; Ministry of Science, ICT and Future Planning; National Research Foundation; National Research Foundation of Korea; SCIEX","keywords":"The Renaissance; Event (particle physics); Proteome; Theme (computing); Kuala lumpur; Proteomics; Library science; Medical education; Political science; Medicine; History; Computer science; Bioinformatics; Biology; World Wide Web; Art history; Genetics; Business","score_opus":0.014178817441117365,"score_gpt":0.28828327469496706,"score_spread":0.2741044572538497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4307568971","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024416234,0.010556953,0.00903311,0.1327665,0.5373878,0.0018179426,0.010700883,0.003362434,0.26995814],"genre_scores_gemma":[0.03591075,0.006363547,0.007124055,0.01720909,0.1045643,0.00076705345,0.006501836,0.0014518213,0.8201076],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985728,0.00021710574,0.000044224846,0.00016963805,0.0005250316,0.00047101913],"domain_scores_gemma":[0.99041057,0.0009878026,0.00058100495,0.00030401736,0.0013120124,0.0064045154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005722072,0.001380471,0.00062430097,0.0016209162,0.0016520151,0.004469061,0.001215854,0.0023488686,0.10548137],"category_scores_gemma":[0.005148904,0.0002888619,0.0007520721,0.0008147004,0.0011991028,0.0033295883,0.00519037,0.004072787,0.023574732],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010984787,0.00012272086,0.00043159944,0.00017543581,0.0000057724155,0.00014320757,0.00016213527,0.00007802763,0.0012198639,0.002234292,0.95900714,0.036310032],"study_design_scores_gemma":[0.000016168902,0.000093725925,0.002188406,0.00010745178,0.0000031307952,0.000059414688,0.00016640712,0.00010019141,0.0004914835,0.0005859819,0.9961778,0.000009950453],"about_ca_topic_score_codex":0.0013214357,"about_ca_topic_score_gemma":0.0029516672,"teacher_disagreement_score":0.10548137,"about_ca_system_score_codex":0.0016599259,"about_ca_system_score_gemma":0.0055889734,"threshold_uncertainty_score":0.35287035},"labels":[],"label_agreement":null},{"id":"W4312466774","doi":"10.1016/j.mcpro.2022.100308","title":"Integrative Structural Biology to Understand Biological Complexity","year":2022,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute","funders":"","keywords":"Computational biology; Biology; Evolutionary biology; Data science; Computer science","score_opus":0.03904450294514473,"score_gpt":0.29482619487961925,"score_spread":0.25578169193447453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312466774","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.059407987,0.11955068,0.5447291,0.061757945,0.003093996,0.00034166037,0.0042114477,0.0054426063,0.20146453],"genre_scores_gemma":[0.5018999,0.08886202,0.34305602,0.01043464,0.002427597,0.0007472347,0.008621736,0.0011267138,0.042824186],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.99959785,0.00012315152,0.000018066701,0.00011836997,0.0001016205,0.000040903982],"domain_scores_gemma":[0.9993316,0.00018219782,0.00007115161,0.00020021739,0.00009831431,0.00011667623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014566068,0.000714952,0.0007399938,0.001369555,0.0008045236,0.003120581,0.0010301494,0.001109203,0.006940893],"category_scores_gemma":[0.0013380412,0.00027413067,0.00077876105,0.0010137593,0.0030140795,0.0034433606,0.002428154,0.002610463,0.0018433557],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007303605,0.00006153274,0.0021122005,0.00070901494,0.00016322295,0.00017787336,0.0011959061,0.0055809366,0.03353571,0.8072899,0.02147249,0.12762824],"study_design_scores_gemma":[0.000019837544,0.00008296839,0.004082317,0.00030429865,0.000065086686,0.00033268717,0.0007535381,0.00816713,0.004811989,0.56796217,0.41338274,0.000035229295],"about_ca_topic_score_codex":0.0012147427,"about_ca_topic_score_gemma":0.0013388398,"teacher_disagreement_score":0.006940893,"about_ca_system_score_codex":0.0024494133,"about_ca_system_score_gemma":0.001870335,"threshold_uncertainty_score":0.023219645},"labels":[],"label_agreement":null},{"id":"W4320181680","doi":"10.1016/j.mcpro.2023.100507","title":"Profiling Humoral Immunity After Mixing and Matching COVID-19 Vaccines Using SARS-CoV-2 Variant Protein Microarrays","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Science and Technology Council; Chang Gung Medical Foundation; National Health Research Institutes; National Cheng Kung University; Ministry of Science and Technology, Taiwan; Chang Gung Memorial Hospital, Linkou","keywords":"Antibody; Neutralizing antibody; Virology; Humoral immunity; Neutralization; Biology; Molecular biology; Immunology","score_opus":0.04461922161135912,"score_gpt":0.32946633801655606,"score_spread":0.28484711640519694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320181680","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903868,0.00036954347,0.007014539,0.00008315905,0.00004222511,0.00009801121,0.0010564285,0.00012961896,0.0008196788],"genre_scores_gemma":[0.974212,0.0005225482,0.017439168,0.00042430943,0.00003319704,0.00028581676,0.0035326292,0.000034365996,0.0035160002],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999579,0.0000713449,0.00002580321,0.00011464666,0.00012898383,0.0000802231],"domain_scores_gemma":[0.9998646,0.000031897966,0.00003485969,0.000011553174,0.00003802919,0.0000190972],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002961736,0.00040600263,0.0003346,0.00020781215,0.00015771619,0.00035398794,0.00017341958,0.000394769,0.0010007571],"category_scores_gemma":[0.00025203722,0.00017116156,0.00030597608,0.00018104,0.00011145854,0.00020311202,0.00015958505,0.00049378333,0.00035425005],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014050257,0.000058942867,0.0011673449,0.00001686784,0.000009865835,0.0000052346413,0.000010731468,0.000112267604,0.9969351,0.000013834544,0.00006434332,0.0014650348],"study_design_scores_gemma":[0.000020951285,0.0015462099,0.024340352,0.000004270719,0.000041699837,0.00008319468,0.00005075894,0.0038385317,0.96841574,0.000048924336,0.0015969815,0.000012425568],"about_ca_topic_score_codex":0.00037489852,"about_ca_topic_score_gemma":0.00066666293,"teacher_disagreement_score":0.0010007571,"about_ca_system_score_codex":0.00025697923,"about_ca_system_score_gemma":0.00011956482,"threshold_uncertainty_score":0.0033478737},"labels":[],"label_agreement":null},{"id":"W4362676589","doi":"10.1016/j.mcpro.2023.100543","title":"N-Terminomic Changes in Neurons During Excitotoxicity Reveal Proteolytic Events Associated With Synaptic Dysfunctions and Potential Targets for Neuroprotection","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Calpain Protease Function and Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Lundbeckfonden; H. Lundbeck A/S; Medical Research Council; Novo Nordisk; Israel Science Foundation; National Health and Medical Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Excitotoxicity; Neuroprotection; Calpain; Biology; Glutamate receptor; Neuroscience; Cell biology; Proteolysis; Neurodegeneration; Biochemistry; Receptor; Medicine; Internal medicine","score_opus":0.006432464046344348,"score_gpt":0.19947070349026172,"score_spread":0.19303823944391738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362676589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98915917,0.0026367775,0.0064897425,0.00012267623,0.000027625154,0.000026458962,0.0005769606,0.00003660604,0.000924146],"genre_scores_gemma":[0.990176,0.0019252369,0.005305541,0.00015576524,0.000015053986,0.000041176725,0.00092608016,0.000025955795,0.0014290706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992394,0.000008125985,0.0000075322414,0.000025228297,0.000019693629,0.000015516103],"domain_scores_gemma":[0.99986553,0.000014861841,0.000061398685,0.000010767427,0.000022062502,0.000025416148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016196146,0.00033968402,0.0002397849,0.00023089319,0.000117516785,0.00025911749,0.00018157142,0.00033753618,0.00061969896],"category_scores_gemma":[0.00017578212,0.00010512058,0.00020441196,0.00018557649,0.0002490076,0.00027789688,0.00016669236,0.00048908585,0.0002441797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007184913,0.000005192121,0.00021832698,0.000018675875,0.000003951872,0.00004510307,0.0000075510848,0.00001346735,0.99917275,0.00002988954,0.000008758701,0.00040452657],"study_design_scores_gemma":[0.000013155248,0.00021618247,0.060122333,0.0000168051,0.00003986507,0.001183799,0.000083765226,0.0008325481,0.93579316,0.00022353334,0.0014666127,0.000008236428],"about_ca_topic_score_codex":0.0003469882,"about_ca_topic_score_gemma":0.0005667493,"teacher_disagreement_score":0.00061969896,"about_ca_system_score_codex":0.0002438117,"about_ca_system_score_gemma":0.00012432443,"threshold_uncertainty_score":0.0020731091},"labels":[],"label_agreement":null},{"id":"W4366609028","doi":"10.1016/j.mcpro.2023.100556","title":"Germ Cell–Specific Proteins AKAP4 and ASPX Facilitate Identification of Rare Spermatozoa in Non-Obstructive Azoospermia","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Sperm and Testicular Function","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Toronto; Sunnybrook Hospital; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; Sunnybrook Health Science Centre; CReATe Fertility Centre","funders":"Canadian Institutes of Health Research; Physicians' Services Incorporated Foundation; University of Alberta; Prostate Cancer Canada; Movember Foundation","keywords":"Azoospermia; Identification (biology); Germ cell; Chemistry; Andrology; Medicine; Computational biology; Biology; Biochemistry; Genetics; Infertility; Pregnancy; Gene","score_opus":0.011900031119665486,"score_gpt":0.2187721337750076,"score_spread":0.20687210265534212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366609028","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98258,0.0049683866,0.0102039315,0.00016264648,0.000039757513,0.000064474065,0.00085285626,0.00019624674,0.0009317609],"genre_scores_gemma":[0.98585594,0.0016199766,0.010418021,0.00009462942,0.000025530422,0.0000344421,0.00081069814,0.000019762598,0.001120912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99977905,0.000034736186,0.000025169493,0.00006196087,0.00007060103,0.000028598586],"domain_scores_gemma":[0.99979216,0.000051265702,0.000059015074,0.000016775899,0.000046819016,0.00003395061],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005227482,0.00039536992,0.00028437612,0.0014297911,0.00025372542,0.0005678488,0.00028337445,0.00047247368,0.0012641612],"category_scores_gemma":[0.00046738086,0.00017547164,0.0003373263,0.00055412564,0.00027030206,0.00027147227,0.00040810695,0.00038650288,0.00034109663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036979784,0.000038821825,0.04068644,0.0002506959,0.00006477852,0.00046704937,0.00008261203,0.00016838104,0.940118,0.00016702323,0.00020049574,0.017385963],"study_design_scores_gemma":[0.00003412701,0.00067551516,0.39636663,0.00005604449,0.00019797093,0.004946183,0.0002323222,0.0048150583,0.58550584,0.0004915249,0.006650065,0.000028778115],"about_ca_topic_score_codex":0.0005574732,"about_ca_topic_score_gemma":0.00073639734,"teacher_disagreement_score":0.0014297911,"about_ca_system_score_codex":0.00018933845,"about_ca_system_score_gemma":0.00019040624,"threshold_uncertainty_score":0.004229009},"labels":[],"label_agreement":null},{"id":"W4366978051","doi":"10.1016/j.mcpro.2023.100559","title":"Meeting Report on the 2nd Chinese American Society for Mass Spectrometry Conference: Advancing Biological and Pharmaceutical Mass Spectrometry","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; McGill University; University of British Columbia","funders":"National Institutes of Health; National Science Foundation","keywords":"Library science; Exhibition; Presentation (obstetrics); Accelerator mass spectrometry; Medical education; Political science; Engineering; Engineering ethics; Mass spectrometry; Chemistry; Medicine; Computer science; History","score_opus":0.020837063036756046,"score_gpt":0.29086192068878913,"score_spread":0.2700248576520331,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366978051","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0142915435,0.06872443,0.009477625,0.12474918,0.4473158,0.002556618,0.010309015,0.0014597023,0.32111606],"genre_scores_gemma":[0.026151732,0.023957921,0.0046070125,0.017849276,0.06918876,0.0011454329,0.0095532555,0.00047877448,0.8470678],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998192,0.00019893733,0.000072959876,0.00023743516,0.0009217866,0.00037677152],"domain_scores_gemma":[0.9973016,0.00009650969,0.000093313814,0.00007308698,0.0014642697,0.00097127486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004076113,0.001678833,0.00071519567,0.001929865,0.0023702413,0.0044994922,0.0015545246,0.0029156418,0.10059933],"category_scores_gemma":[0.0017275524,0.0003641562,0.0012037503,0.00096503843,0.00047549114,0.0017226081,0.0027022993,0.0027815546,0.05003576],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013116453,0.0000684138,0.00044308792,0.00023152436,0.000018778786,0.00013874746,0.000054598157,0.00007900603,0.0024547144,0.00075645436,0.9682091,0.027414462],"study_design_scores_gemma":[0.0000197528,0.00005609823,0.0017895923,0.000082307895,0.000016993328,0.00006168458,0.000086123044,0.00015208777,0.00083072874,0.00027475372,0.9966137,0.000016125736],"about_ca_topic_score_codex":0.006586595,"about_ca_topic_score_gemma":0.01180765,"teacher_disagreement_score":0.10059933,"about_ca_system_score_codex":0.0022060699,"about_ca_system_score_gemma":0.007901261,"threshold_uncertainty_score":0.3365383},"labels":[],"label_agreement":null},{"id":"W4379197493","doi":"10.1016/j.mcpro.2023.100586","title":"Comprehensive Glycoprofiling of Oral Tumors Associates N-Glycosylation With Lymph Node Metastasis and Patient Survival","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Research Council; Cancer Institute NSW; Mount Allison University; Fundação de Amparo à Pesquisa do Estado de São Paulo; Macquarie University; CMC Microsystems","keywords":"Glycoproteomics; Glycomics; Glycome; Glycosylation; Biology; Metastasis; Glycobiology; Cancer research; Glycan; Bioinformatics; Cancer; Glycoprotein; Biochemistry; Genetics","score_opus":0.01564982852819446,"score_gpt":0.2529196205856926,"score_spread":0.23726979205749815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4379197493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986029,0.00031258535,0.0005896157,0.000016590227,0.0000020317323,0.000006381364,0.00029502134,0.0000062267304,0.00016864612],"genre_scores_gemma":[0.99813384,0.00033414023,0.0006831187,0.000015171253,0.000003040916,0.000008981798,0.0006114791,0.0000031374004,0.00020708237],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999206,0.00001056011,0.0000059205336,0.000025462552,0.000018193969,0.000019160225],"domain_scores_gemma":[0.9999448,0.000007951087,0.000019205565,0.000007380934,0.000008713603,0.000011990658],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020430579,0.0002144859,0.00020368665,0.0003241919,0.00018098702,0.00025775883,0.00007013365,0.00013002327,0.00038231906],"category_scores_gemma":[0.00018465423,0.000065366825,0.00015256352,0.00039209728,0.00012708714,0.0001275767,0.00029572667,0.00021836965,0.000099943754],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087534817,0.00007944418,0.26464072,0.00008131527,0.00013881961,0.00019126109,0.00017080999,0.00047755463,0.70837724,0.000089408764,0.00024418868,0.024633942],"study_design_scores_gemma":[0.000005866026,0.0002946466,0.9494214,0.000006966158,0.00009894191,0.0004955295,0.0001595498,0.0014774738,0.046946444,0.00014012761,0.00094157964,0.000011535198],"about_ca_topic_score_codex":0.00083169935,"about_ca_topic_score_gemma":0.0014698579,"teacher_disagreement_score":0.00083169935,"about_ca_system_score_codex":0.00012068761,"about_ca_system_score_gemma":0.00016879046,"threshold_uncertainty_score":0.0016537905},"labels":[],"label_agreement":null},{"id":"W4379742494","doi":"10.1016/j.mcpro.2023.100588","title":"A Peptidisc-Based Survey of the Plasma Membrane Proteome of a Mammalian Cell","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; University of British Columbia; Scheme for Promotion of Academic and Research Collaboration; University of Toronto","keywords":"Proteome; Chemistry; Computational biology; Cell biology; Biochemistry; Biology","score_opus":0.013823200789029787,"score_gpt":0.23604862666113302,"score_spread":0.22222542587210323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4379742494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7946152,0.006010028,0.17420478,0.000459377,0.0001275936,0.00025336546,0.011115738,0.0015763093,0.011637628],"genre_scores_gemma":[0.7369964,0.009856055,0.20743234,0.00095371716,0.00012616078,0.0009520234,0.028885823,0.0005104525,0.014286971],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997427,0.000034420467,0.000013343304,0.00006132912,0.00012335027,0.000024886649],"domain_scores_gemma":[0.99987316,0.000024345365,0.000024055056,0.000015344987,0.000036969803,0.000026159672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029575147,0.00073752936,0.00040667545,0.0011331091,0.0004520846,0.00041940034,0.00025148128,0.00041706543,0.0012395409],"category_scores_gemma":[0.00024181356,0.00016955426,0.0003245723,0.0010048355,0.00020372047,0.00032993438,0.00046837272,0.0005428024,0.00083119504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053573563,0.0000144060705,0.00039778638,0.00005767613,0.000015374619,0.000046600904,0.000015722144,0.000047929738,0.99628925,0.000068942645,0.00013730576,0.0028555216],"study_design_scores_gemma":[0.000008623821,0.00022782675,0.017352728,0.000023675542,0.00005224173,0.0012376376,0.00007469379,0.0032209915,0.9680838,0.0001919978,0.009508044,0.000017698962],"about_ca_topic_score_codex":0.00038736383,"about_ca_topic_score_gemma":0.0005526778,"teacher_disagreement_score":0.0012395409,"about_ca_system_score_codex":0.00022715032,"about_ca_system_score_gemma":0.00025900212,"threshold_uncertainty_score":0.004146695},"labels":[],"label_agreement":null},{"id":"W4381250708","doi":"10.1016/j.mcpro.2023.100602","title":"Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; University Health Network","funders":"H2020 European Research Council; National Cancer Institute; Natural Science Foundation of Zhejiang Province; SystemsX.ch; National Natural Science Foundation of China; National Institutes of Health; Canada Research Chairs; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Princess Margaret Hospital Foundation; Sanofi; National Science Foundation; Astex Pharmaceuticals; Pfizer; European Research Council","keywords":"PI3K/AKT/mTOR pathway; Proteomics; Proteome; Triple-negative breast cancer; Computational biology; Cancer research; Protein kinase B; Biology; Breast cancer; Cell growth; Bioinformatics; Signal transduction; Cancer; Cell biology; Genetics; Gene","score_opus":0.0061728362637961534,"score_gpt":0.22881123123887778,"score_spread":0.22263839497508162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381250708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874369,0.0019294089,0.004344266,0.00015394336,0.000019023531,0.000032801698,0.0047455514,0.0001491319,0.0011890065],"genre_scores_gemma":[0.9757396,0.002550459,0.010200897,0.00020458744,0.0000133008225,0.00008737868,0.009723888,0.000057065303,0.0014229233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986446,0.000011100653,0.000010004323,0.000037236983,0.000059363512,0.000017779916],"domain_scores_gemma":[0.999897,0.000017029586,0.000026738613,0.000009629867,0.000037137226,0.000012462438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001797347,0.00025348968,0.00033884583,0.00052935886,0.00022205296,0.00049582985,0.00010517703,0.00021024903,0.0005423537],"category_scores_gemma":[0.00022945354,0.00011734982,0.00021087521,0.0007906891,0.00010736718,0.00021658948,0.00022665513,0.00028791552,0.0003528528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001726469,0.000021018,0.012597422,0.00010245568,0.000033106786,0.000099408535,0.00005452273,0.00035585696,0.9788632,0.00006333934,0.000336989,0.007299894],"study_design_scores_gemma":[0.000017680204,0.00025912092,0.2870672,0.00002600991,0.000120374636,0.0011534027,0.0003274727,0.01355026,0.68819356,0.00034413705,0.008909937,0.000030877723],"about_ca_topic_score_codex":0.0012599449,"about_ca_topic_score_gemma":0.0014268645,"teacher_disagreement_score":0.0012599449,"about_ca_system_score_codex":0.00029744615,"about_ca_system_score_gemma":0.00019895744,"threshold_uncertainty_score":0.0025051832},"labels":[],"label_agreement":null},{"id":"W4382196143","doi":"10.1016/j.mcpro.2023.100609","title":"Structural Premise of Selective Deubiquitinase USP30 Inhibition by Small-Molecule Benzosulfonamides","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"Chinese Academy of Medical Sciences Initiative for Innovative Medicine; Engineering and Physical Sciences Research Council; Alzheimer’s Research UK; Chinese Academy of Medical Sciences; Bristol-Myers Squibb","keywords":"Deubiquitinating enzyme; Chemistry; Small molecule; Hydrogen–deuterium exchange; Biochemistry; Docking (animal); Enzyme; Ubiquitin; Computational biology; Biophysics; Stereochemistry; Cell biology; Mass spectrometry; Biology; Gene","score_opus":0.010797253124737132,"score_gpt":0.2210714942966726,"score_spread":0.21027424117193547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382196143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98878914,0.0010256545,0.004901762,0.00021371289,0.000028817856,0.000061328705,0.00039552103,0.0001054928,0.0044785445],"genre_scores_gemma":[0.99681735,0.0006780095,0.0014134713,0.00005468299,0.000005051351,0.00002057902,0.00023421642,0.000006870676,0.00076970377],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994457,0.000007752024,0.0000031683358,0.000012404631,0.000020097199,0.000011963699],"domain_scores_gemma":[0.9999542,0.000006785176,0.000016204462,0.0000054453394,0.000006315686,0.000010980622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010202581,0.00024396401,0.0001873712,0.00005706426,0.00015501105,0.00015463606,0.00037268244,0.00022665209,0.0013010622],"category_scores_gemma":[0.00011154933,0.00013327149,0.00016977929,0.000052129337,0.00022242208,0.00015100103,0.00014641286,0.00032305496,0.0002504204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004028425,0.000078844496,0.0003900438,0.000104133906,0.000015851674,0.00017996345,0.000022375752,0.0030198742,0.9913254,0.0015665444,0.00020046184,0.0026937774],"study_design_scores_gemma":[0.000113997565,0.0011324659,0.0021019375,0.000011106869,0.00003231909,0.00028454867,0.00003572399,0.018285485,0.9722725,0.00044535293,0.0052659414,0.000018514655],"about_ca_topic_score_codex":0.0010370075,"about_ca_topic_score_gemma":0.0011299961,"teacher_disagreement_score":0.0013010622,"about_ca_system_score_codex":0.00036321956,"about_ca_system_score_gemma":0.00026896733,"threshold_uncertainty_score":0.0043524504},"labels":[],"label_agreement":null},{"id":"W4386520053","doi":"10.1016/j.mcpro.2023.100644","title":"Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4–Associated Factors, Cellular Functions, and Protein Substrates","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"DDB1; Stable isotope labeling by amino acids in cell culture; Ubiquitin; Cullin; Ubiquitin-Protein Ligases; Ubiquitin ligase; F-box protein; Biochemistry; Cell division control protein 4; Proteasome; Protein degradation; Chemistry; Ubiquitin-conjugating enzyme; Cell biology; Biology; Proteomics","score_opus":0.01183512832779534,"score_gpt":0.21819800303616949,"score_spread":0.20636287470837414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386520053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9261484,0.008344346,0.048204403,0.0007594168,0.00017231538,0.000095555646,0.009023133,0.0013704839,0.0058818357],"genre_scores_gemma":[0.9040445,0.005268152,0.057250973,0.0012884714,0.00008067852,0.00031568663,0.016742619,0.0005616431,0.014447331],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995467,0.000026573745,0.000023025574,0.00014858838,0.0001425404,0.000112562986],"domain_scores_gemma":[0.9998242,0.000027035789,0.000035969988,0.000020651985,0.000046423957,0.00004562683],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004228147,0.0007149704,0.0005697289,0.0013675498,0.0005803489,0.0008420247,0.0004528657,0.00071511144,0.0018832039],"category_scores_gemma":[0.00025340993,0.00037225263,0.0006400833,0.0009331039,0.0003325976,0.00054743467,0.00052646,0.0011566046,0.0012523654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021530512,0.000032799737,0.0017163068,0.00010968388,0.00005941288,0.000091899354,0.000055457425,0.00011542877,0.99377716,0.00021722214,0.00035777251,0.0032515049],"study_design_scores_gemma":[0.0000177124,0.00009399135,0.057480343,0.000018672374,0.000096906544,0.00073029177,0.00014977265,0.009215371,0.9209222,0.00041829166,0.010813305,0.000043020227],"about_ca_topic_score_codex":0.0015823714,"about_ca_topic_score_gemma":0.0021177912,"teacher_disagreement_score":0.0018832039,"about_ca_system_score_codex":0.0007392992,"about_ca_system_score_gemma":0.00031719476,"threshold_uncertainty_score":0.0062999725},"labels":[],"label_agreement":null},{"id":"W4386629401","doi":"10.1016/j.mcpro.2023.100645","title":"Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2–Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; National Research Council Canada","funders":"National Research Council Canada; Centre hospitalier universitaire Sainte-Justine","keywords":"Biology; Human leukocyte antigen; Antigen presentation; Antigen; Immunology; Proteome; Immune system; Major histocompatibility complex; Proteomics; Allele; Virology; Genetics; Gene; T cell","score_opus":0.017525175133052177,"score_gpt":0.2515081052876302,"score_spread":0.233982930154578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386629401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909587,0.0017793258,0.0044544637,0.00012727205,0.000074725176,0.000032127315,0.0015362052,0.000068704496,0.0009684508],"genre_scores_gemma":[0.97846335,0.0016657169,0.009478572,0.00027305668,0.000032736425,0.00011511239,0.006042471,0.000040026433,0.0038887851],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99984765,0.000012338999,0.000010544005,0.00004624577,0.000055277516,0.000027962034],"domain_scores_gemma":[0.9999329,0.000009036236,0.00001561825,0.0000094241095,0.000017852835,0.000015115857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014694923,0.00041796116,0.0003366868,0.00022595449,0.00020764914,0.000301222,0.00019427075,0.00035542285,0.00069703296],"category_scores_gemma":[0.00008962531,0.00014294138,0.0003109634,0.0002865026,0.0001576652,0.00024367156,0.00018037285,0.0006028883,0.00028656406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005342392,0.0000088360675,0.00015851374,0.000013251007,0.0000031401075,0.000024642863,0.0000052789806,0.000014381926,0.9994392,0.000016623291,0.000016284925,0.00024651876],"study_design_scores_gemma":[0.000015184328,0.00020643766,0.029841999,0.000004969933,0.000022046384,0.00050534826,0.000054498185,0.001746934,0.9655749,0.000072760115,0.0019414332,0.000013328648],"about_ca_topic_score_codex":0.00068173034,"about_ca_topic_score_gemma":0.0010459258,"teacher_disagreement_score":0.00069703296,"about_ca_system_score_codex":0.00026592155,"about_ca_system_score_gemma":0.00017345134,"threshold_uncertainty_score":0.002331853},"labels":[],"label_agreement":null},{"id":"W4386693427","doi":"10.1016/j.mcpro.2023.100638","title":"Quantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana Using Short Gradient Multi-CV FAIMSpro BoxCar DIA","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation","keywords":"Proteome; Arabidopsis; Arabidopsis thaliana; Seedling; Shoot; Osmotic shock; Proteomics; Quantitative proteomics; Biology; Chemistry; Computational biology; Botany; Mutant; Bioinformatics; Biochemistry","score_opus":0.024330357362282586,"score_gpt":0.3003092441628535,"score_spread":0.2759788868005709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386693427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8489089,0.0019421395,0.13728422,0.00035066745,0.00010535551,0.00038131955,0.005138669,0.0030698883,0.002818906],"genre_scores_gemma":[0.67923063,0.0021320027,0.30176732,0.0006121434,0.00003568659,0.0010796482,0.0065197325,0.0012543944,0.0073684296],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99977547,0.00002164755,0.000015574236,0.00008261486,0.0000765017,0.00002818353],"domain_scores_gemma":[0.9997526,0.000048500307,0.000046641664,0.000030541334,0.00008423626,0.00003750309],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045896647,0.0005467286,0.00029975062,0.00041109734,0.00038341328,0.00040035395,0.0004475052,0.00031172388,0.0010053709],"category_scores_gemma":[0.00028962744,0.00019841905,0.00025390403,0.00035078873,0.0002724046,0.0004211736,0.0003261577,0.0008257806,0.0005798648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026523328,0.000010172857,0.00016853442,0.000025182266,0.0000045745737,0.00000982619,0.000016198363,0.000038003567,0.9982461,0.000033392753,0.000065486536,0.0013560685],"study_design_scores_gemma":[0.0000091851025,0.00021450028,0.013766773,0.000010752101,0.000019202309,0.0001408639,0.000053801647,0.003274868,0.9794296,0.00014327416,0.0029130974,0.000024126382],"about_ca_topic_score_codex":0.0020445571,"about_ca_topic_score_gemma":0.0058502518,"teacher_disagreement_score":0.0020445571,"about_ca_system_score_codex":0.00055934343,"about_ca_system_score_gemma":0.0004572392,"threshold_uncertainty_score":0.004065335},"labels":[],"label_agreement":null},{"id":"W4387083541","doi":"10.1016/j.mcpro.2023.100646","title":"MCP’s New Editorial Posture Moving Forward","year":2023,"lang":"en","type":"editorial","venue":"Molecular & Cellular Proteomics","topic":"Biotechnology and Related Fields","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computer science; Computational biology; Biology","score_opus":0.004393023431354834,"score_gpt":0.23324918105691309,"score_spread":0.22885615762555825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387083541","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000029941208,0.0017139264,0.000116821124,0.0588396,0.93642753,0.000016184913,0.00003598493,0.0000886469,0.0027313451],"genre_scores_gemma":[0.00055456534,0.0027357256,0.00024540068,0.06329601,0.91516614,0.000032485623,0.000045369892,0.00011330187,0.017811064],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99171644,0.0011621864,0.0007849795,0.00086157734,0.004744536,0.0007303108],"domain_scores_gemma":[0.9629325,0.006635175,0.001972881,0.001225972,0.017867025,0.009366409],"candidate_categories":["scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.010174512,0.0026051349,0.0016852772,0.0029420613,0.004102775,0.012642281,0.0027500717,0.014657373,0.03546445],"category_scores_gemma":[0.04373683,0.0009038024,0.0023458928,0.001494214,0.0023746295,0.005910332,0.0021078014,0.020000784,0.024753008],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014503715,0.000006638676,0.000015082196,0.00006709021,0.000004670718,0.00006836701,0.000009702378,0.000012425387,0.000045303044,0.00033682102,0.9961479,0.0032714407],"study_design_scores_gemma":[0.000021164366,0.000012656926,0.00009294019,0.0001681694,0.000010450866,0.00012941695,0.000024931154,0.000039317038,0.000057565834,0.0005853232,0.9988483,0.000009684469],"about_ca_topic_score_codex":0.0019340898,"about_ca_topic_score_gemma":0.0059194835,"teacher_disagreement_score":0.98735774,"about_ca_system_score_codex":0.0039643915,"about_ca_system_score_gemma":0.0077580875,"threshold_uncertainty_score":0.11864036},"labels":[],"label_agreement":null},{"id":"W4387497202","doi":"10.1016/j.mcpro.2023.100660","title":"Proteomic and Phosphoproteomic Reprogramming in Epithelial Ovarian Cancer Metastasis","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"Canadian Institutes of Health Research; Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Research, Innovation and Science","keywords":"Spheroid; ROCK1; Metastasis; Cancer research; Biology; Cell biology; Reprogramming; Cell; Cancer; Kinase; Cell culture; Protein kinase A; Biochemistry","score_opus":0.00844620111604691,"score_gpt":0.24101156804316962,"score_spread":0.2325653669271227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387497202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99438816,0.0011220211,0.0024144165,0.0000771614,0.000025897225,0.000038042646,0.0009960936,0.00006898178,0.0008692442],"genre_scores_gemma":[0.99303705,0.0013247817,0.0024733758,0.000089525456,0.000009849073,0.000057524325,0.0013879602,0.000025928342,0.0015940868],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993026,0.0000071439795,0.000005347819,0.000021363037,0.000021118782,0.000014797279],"domain_scores_gemma":[0.9999502,0.000006389169,0.00001643895,0.000006327712,0.0000073276287,0.000013392228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008190909,0.00019740456,0.00019216574,0.00021406873,0.00011642904,0.00027147305,0.00011725855,0.00018168244,0.00075997395],"category_scores_gemma":[0.00011043424,0.000109156725,0.0002548594,0.00022816293,0.000116346026,0.0002375003,0.00020579675,0.0003014268,0.00018255188],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006933612,0.000013890652,0.00046915907,0.00003052802,0.000004741582,0.000046370224,0.000008683567,0.000059070608,0.9978502,0.000046217072,0.0000296389,0.0013722264],"study_design_scores_gemma":[0.000017136714,0.0003321388,0.08831995,0.000009126881,0.00003670022,0.0007172334,0.00010419177,0.0023340099,0.90392613,0.00022311998,0.0039651324,0.000015096613],"about_ca_topic_score_codex":0.00044678999,"about_ca_topic_score_gemma":0.0005718717,"teacher_disagreement_score":0.00075997395,"about_ca_system_score_codex":0.00018908156,"about_ca_system_score_gemma":0.0001408256,"threshold_uncertainty_score":0.002542317},"labels":[],"label_agreement":null},{"id":"W4389060492","doi":"10.1016/j.mcpro.2023.100687","title":"Detection of Pancreatic Ductal Adenocarcinoma-Associated Proteins in Serum","year":2023,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Environmental Health Sciences; National Cancer Institute; National Institutes of Health; Rolfe Pancreatic Cancer Foundation","keywords":"Glycoprotein; Pancreatic cancer; Pancreatic ductal adenocarcinoma; Cancer; Stage (stratigraphy); Biology; Medicine; Cancer research; Oncology; Internal medicine; Bioinformatics; Molecular biology","score_opus":0.018811848165509636,"score_gpt":0.2743161383966384,"score_spread":0.25550429023112875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389060492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615616,0.0010064509,0.0020794538,0.000034947625,0.000008901591,0.00001720966,0.00021230683,0.000029350707,0.00045518743],"genre_scores_gemma":[0.9956145,0.00049814244,0.0032647317,0.00005710412,0.000006293358,0.000011961844,0.0003288093,0.0000039144456,0.00021443769],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997718,0.000059752114,0.000020829786,0.00005788436,0.00006490442,0.000024738694],"domain_scores_gemma":[0.9998473,0.000034472032,0.000046194622,0.000012631557,0.00003465094,0.000024656076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030656444,0.00033022134,0.00020079498,0.00066024956,0.00016031222,0.0003031537,0.00010361968,0.00025919653,0.00030918288],"category_scores_gemma":[0.0004905561,0.000102571204,0.00017014814,0.0005089534,0.00018540173,0.00013789425,0.00021036432,0.00024018307,0.00011922941],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036976952,0.000048331985,0.05423576,0.00008517636,0.00005090951,0.00017699822,0.00006438438,0.00009205572,0.9366231,0.0000548419,0.000059707207,0.008138942],"study_design_scores_gemma":[0.000031311134,0.00083277625,0.42812204,0.00002644433,0.00013044279,0.003576942,0.00021831632,0.003981617,0.5610746,0.0002067553,0.0017797383,0.000018969784],"about_ca_topic_score_codex":0.0003754311,"about_ca_topic_score_gemma":0.00033515517,"teacher_disagreement_score":0.00066024956,"about_ca_system_score_codex":0.00012603647,"about_ca_system_score_gemma":0.000116566014,"threshold_uncertainty_score":0.0016212463},"labels":[],"label_agreement":null},{"id":"W4390581546","doi":"10.1016/j.mcpro.2024.100713","title":"Full Mass Range ΦSDM Orbitrap Mass Spectrometry for DIA Proteome Analysis","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada)","funders":"HORIZON EUROPE Framework Programme; Horizon 2020 Framework Programme; Max-Planck-Gesellschaft; European Commission","keywords":"Orbitrap; Mass spectrometry; Proteome; Chemistry; Chromatography; Isobaric labeling; Range (aeronautics); Ion-mobility spectrometry–mass spectrometry; Protein mass spectrometry; Tandem mass spectrometry; Analytical Chemistry (journal); Selected reaction monitoring; Materials science; Biochemistry","score_opus":0.008604917105087522,"score_gpt":0.2531621095111289,"score_spread":0.24455719240604137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390581546","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.058190923,0.0072853616,0.91093624,0.00077986927,0.00041423662,0.0003342645,0.003967353,0.011977764,0.0061139744],"genre_scores_gemma":[0.08783458,0.0030096062,0.89633685,0.0005342727,0.00010636773,0.00046439687,0.0047279303,0.0014933895,0.0054925163],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927706,0.000147034,0.00005385135,0.000154444,0.00032377127,0.000043841625],"domain_scores_gemma":[0.9994466,0.00016365545,0.000078548655,0.00012380086,0.00014824797,0.000039269216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001706606,0.0009506222,0.00059182313,0.0011984,0.0006243325,0.00083404494,0.0011695655,0.0007481242,0.00667837],"category_scores_gemma":[0.0017008252,0.0004376866,0.0005395709,0.0011261507,0.0003343637,0.0011895683,0.0010025626,0.00163923,0.004811115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033589185,0.00008803522,0.00080258684,0.0005901762,0.00008133654,0.00017632646,0.000075325224,0.0004959352,0.89641035,0.0029896973,0.0065159528,0.0914384],"study_design_scores_gemma":[0.00007417565,0.00026618352,0.0039953184,0.00006810351,0.00005742793,0.0017314452,0.000044728073,0.02928185,0.89276725,0.0030735293,0.06855334,0.00008664233],"about_ca_topic_score_codex":0.00032297274,"about_ca_topic_score_gemma":0.0007399702,"teacher_disagreement_score":0.00667837,"about_ca_system_score_codex":0.00044909256,"about_ca_system_score_gemma":0.00079097884,"threshold_uncertainty_score":0.02234137},"labels":[],"label_agreement":null},{"id":"W4390661659","doi":"10.1016/j.mcpro.2024.100714","title":"Ion Mobility–Based Enrichment-Free N-Terminomics Analysis Reveals Novel Legumain Substrates in Murine Spleen","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Bone and Joint Health Institute; University of Calgary","funders":"National Health and Medical Research Council; Australian Research Council; University of Melbourne; Medical Research Council; Australian Government","keywords":"Proteolysis; Endopeptidase; Cleavage (geology); In vitro; Chemistry; Protease; Biochemistry; Proteome; Fractionation; Cell biology; Biology; Computational biology; Biophysics; Enzyme; Chromatography","score_opus":0.009870547376866382,"score_gpt":0.254155499332868,"score_spread":0.24428495195600164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390661659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98455286,0.0010090269,0.01251158,0.0000899139,0.000014185287,0.000027650789,0.0006678658,0.00011626051,0.0010106516],"genre_scores_gemma":[0.97173214,0.0009931877,0.02243565,0.0001577039,0.000017575925,0.0000512791,0.0019866282,0.00009995927,0.0025258109],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999348,0.000005464335,0.0000041160556,0.000023929844,0.000017193877,0.00001449334],"domain_scores_gemma":[0.9998957,0.000017963384,0.000032906955,0.000008560755,0.000018473536,0.000026388481],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000145022,0.00034702543,0.00011707821,0.00043690295,0.00012458468,0.0002276679,0.00015812968,0.00029735683,0.0005526925],"category_scores_gemma":[0.00013681725,0.00010093869,0.0001962863,0.00014015191,0.00016553389,0.00018907362,0.00019608073,0.0003612689,0.00029667126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019567413,0.0000021517471,0.00017312844,0.000006880714,0.0000016366835,0.000013557673,0.0000064497435,0.000009441467,0.99938726,0.000010585303,0.0000075887915,0.0003616902],"study_design_scores_gemma":[0.000005221646,0.00009909799,0.022867868,0.000010222902,0.000016007412,0.0004131681,0.00003543808,0.00129211,0.97386134,0.00010411263,0.0012877206,0.00000759845],"about_ca_topic_score_codex":0.0003031508,"about_ca_topic_score_gemma":0.0005082999,"teacher_disagreement_score":0.0005526925,"about_ca_system_score_codex":0.00013541512,"about_ca_system_score_gemma":0.00009811587,"threshold_uncertainty_score":0.0018489361},"labels":[],"label_agreement":null},{"id":"W4392231465","doi":"10.1016/j.mcpro.2024.100744","title":"Global Interactome Mapping Reveals Pro-tumorigenic Interactions of NF-κB in Breast Cancer","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Central European Institute of Technology; Ministerstvo Zdravotnictví Ceské Republiky; Ministerstvo Školství, Mládeže a Tělovýchovy; European Commission; National Cancer Research Institute","keywords":"Interactome; Stable isotope labeling by amino acids in cell culture; Breast cancer; Protein–protein interaction; Computational biology; Cancer; Cancer research; Interaction network; NF-κB; Chemistry; Biology; Cell biology; Proteomics; Signal transduction; Biochemistry; Gene; Genetics","score_opus":0.007918516912742937,"score_gpt":0.26628405521750004,"score_spread":0.2583655383047571,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392231465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933415,0.00074630766,0.0036378761,0.000036874648,0.0000028778416,0.0000060528478,0.0015072775,0.00017941721,0.00054181524],"genre_scores_gemma":[0.99122214,0.00040772825,0.0036440892,0.000014254137,0.0000041236326,0.000017916396,0.004111278,0.000034790122,0.0005436827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998969,0.00001037305,0.000005013401,0.000045789086,0.000021649705,0.000020289293],"domain_scores_gemma":[0.999905,0.000020113293,0.000028700257,0.000014560791,0.000011904498,0.000019687115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013382787,0.00029016472,0.00029067334,0.0013672796,0.00025132525,0.00035786696,0.00014067824,0.00019063095,0.0011951614],"category_scores_gemma":[0.00020208705,0.000114369795,0.00042284778,0.0010796259,0.00013983701,0.00029863187,0.00032962748,0.00018242035,0.00027913004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007852596,0.000109610744,0.07681146,0.0002933151,0.0003234891,0.00040365264,0.00016031315,0.0065868758,0.88620776,0.00076277135,0.0009189768,0.02663658],"study_design_scores_gemma":[0.000024743798,0.00020681426,0.7772048,0.000023384704,0.00030258927,0.001550383,0.00031727552,0.07712062,0.13467045,0.0019628205,0.006572757,0.000043348973],"about_ca_topic_score_codex":0.0010981179,"about_ca_topic_score_gemma":0.0015539705,"teacher_disagreement_score":0.0013672796,"about_ca_system_score_codex":0.00022513949,"about_ca_system_score_gemma":0.00015658097,"threshold_uncertainty_score":0.00399822},"labels":[],"label_agreement":null},{"id":"W4393229829","doi":"10.1016/j.mcpro.2024.100755","title":"Protein Interaction Map of APOBEC3 Enzyme Family Reveals Deamination-Independent Role in Cellular Function","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; Canadian Institutes of Health Research; National Institutes of Health; University of Saskatchewan; Houston Advanced Research Center","keywords":"Deamination; Function (biology); Chemistry; Enzyme; Biochemistry; Computational biology; Biology; Cell biology; Genetics","score_opus":0.008085828479402826,"score_gpt":0.2221720447063006,"score_spread":0.21408621622689777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393229829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866257,0.003349693,0.0047626332,0.00012637836,0.0000087370945,0.000012428378,0.0017576034,0.00020354353,0.0031534024],"genre_scores_gemma":[0.9884509,0.00097533886,0.0044686706,0.000058593425,0.000009110147,0.000016178172,0.0027792847,0.00001512165,0.0032268353],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99995303,0.0000027920146,0.0000018644147,0.00001849836,0.0000129573,0.000010751366],"domain_scores_gemma":[0.9999459,0.000008000004,0.000015230223,0.0000023523849,0.000012773416,0.000015805603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043405755,0.00018268563,0.000117669944,0.0006644856,0.00020370085,0.00014550917,0.00011117321,0.00020310002,0.0021541046],"category_scores_gemma":[0.00007275596,0.000057922614,0.00019976456,0.00061377045,0.00006525652,0.00016349729,0.00009412552,0.00015634837,0.00066516805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001977246,0.00003519634,0.013371082,0.000112664165,0.000024993431,0.00049346394,0.000063378604,0.00035514528,0.97359633,0.0003767784,0.00080056244,0.0105727175],"study_design_scores_gemma":[0.000020640426,0.00024717848,0.65255725,0.000029922492,0.000111201414,0.0041541206,0.00031775035,0.030240366,0.28369656,0.0013603345,0.027237883,0.000026779766],"about_ca_topic_score_codex":0.0029321203,"about_ca_topic_score_gemma":0.002244982,"teacher_disagreement_score":0.0029321203,"about_ca_system_score_codex":0.00027114814,"about_ca_system_score_gemma":0.00012369192,"threshold_uncertainty_score":0.0072062016},"labels":[],"label_agreement":null},{"id":"W4393408839","doi":"10.1016/j.mcpro.2024.100758","title":"Proteomics Impact on Cell Biology to Resolve Cell Structure and Function","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Electron Microscopy Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"University of Alberta; McGill University; University of Washington","keywords":"Proteomics; Compendium; Computational biology; Function (biology); Cell function; Cell biology; Computer science; Cell; Nanotechnology; Biology; Materials science; Biochemistry","score_opus":0.0034605038948592602,"score_gpt":0.27399367833082516,"score_spread":0.2705331744359659,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393408839","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.030586833,0.5635673,0.036352374,0.23561363,0.012603092,0.0000754986,0.0017283616,0.0012000125,0.118272975],"genre_scores_gemma":[0.27525824,0.5815938,0.036096163,0.061751444,0.012746534,0.000115432085,0.0011858199,0.00043274407,0.030819798],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99810326,0.0004910263,0.00008075804,0.0003294722,0.000814023,0.00018149482],"domain_scores_gemma":[0.99550843,0.0014075737,0.00017853527,0.00028839137,0.001989168,0.00062795763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0075205215,0.00090139656,0.0008471451,0.0016952085,0.00091866,0.003981268,0.0008238845,0.0026002305,0.008543111],"category_scores_gemma":[0.0056258594,0.0003200495,0.00056885614,0.0018651836,0.0024062549,0.004470438,0.0021201598,0.0030966157,0.0052588214],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005709537,0.00025061064,0.004985561,0.0022559918,0.00015476292,0.0007695191,0.000406808,0.0017820928,0.091365285,0.34148696,0.12827379,0.42769766],"study_design_scores_gemma":[0.000029343078,0.00023456906,0.0062282667,0.0007487767,0.0000896147,0.0009212786,0.00035235562,0.0014267246,0.024567582,0.073086254,0.8922551,0.000060103903],"about_ca_topic_score_codex":0.0020731832,"about_ca_topic_score_gemma":0.0009800568,"teacher_disagreement_score":0.008543111,"about_ca_system_score_codex":0.0026294384,"about_ca_system_score_gemma":0.0029534285,"threshold_uncertainty_score":0.03977281},"labels":[],"label_agreement":null},{"id":"W4394693188","doi":"10.1016/j.mcpro.2024.100763","title":"The Landscape and Perspectives of the Human Gut Metaproteomics","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metaproteomics; Metagenomics; Computational biology; Proteome; Microbiome; Human proteome project; Human microbiome; Human Microbiome Project; Biology; Proteomics; Bioinformatics","score_opus":0.007817686838470483,"score_gpt":0.23448663772410233,"score_spread":0.22666895088563185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394693188","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1848823,0.6639855,0.05458236,0.07641697,0.00060714973,0.000055282166,0.00096723664,0.00026481313,0.018238436],"genre_scores_gemma":[0.69026744,0.2378447,0.058396164,0.00978529,0.0014712822,0.00010519259,0.0006508515,0.00011828801,0.0013608291],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9978921,0.0010667659,0.00008740191,0.0004701391,0.00034481633,0.00013878873],"domain_scores_gemma":[0.99658453,0.0016575764,0.0003723447,0.00034665706,0.00064663,0.00039221704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008170951,0.00048957585,0.0008104908,0.0029815317,0.0007640466,0.004782071,0.00095810054,0.0010492351,0.001107656],"category_scores_gemma":[0.0040315664,0.00025105104,0.0005224979,0.002231064,0.0031497497,0.0049671563,0.001895098,0.0019773317,0.00021066541],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007228488,0.00015992632,0.09208422,0.0043315766,0.0008637414,0.0010991818,0.005581528,0.00425278,0.049698003,0.14673804,0.009334659,0.6851335],"study_design_scores_gemma":[0.000034933095,0.00068060687,0.2315092,0.002954665,0.0006329791,0.005360121,0.00893925,0.009186576,0.017066712,0.3620764,0.3612343,0.00032424447],"about_ca_topic_score_codex":0.0011075923,"about_ca_topic_score_gemma":0.0014458748,"teacher_disagreement_score":0.008170951,"about_ca_system_score_codex":0.0015955984,"about_ca_system_score_gemma":0.00136197,"threshold_uncertainty_score":0.043212593},"labels":[],"label_agreement":null},{"id":"W4394787042","doi":"10.1016/j.mcpro.2024.100767","title":"Replisome Proximal Protein Associations and Dynamic Proteomic Changes at Stalled Replication Forks","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto; Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada","keywords":"Replisome; Pre-replication complex; Control of chromosome duplication; Biology; Origin recognition complex; DNA replication; DNA re-replication; Eukaryotic DNA replication; Helicase; Genetics; Cell biology; Chromatin; Genome instability; DNA repair; Replication factor C; DNA replication factor CDT1; Computational biology; DNA damage; DNA; Gene","score_opus":0.005928285103690113,"score_gpt":0.23296523058644092,"score_spread":0.2270369454827508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394787042","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950015,0.0015463653,0.0020154368,0.000049838556,0.000009927677,0.0000072318016,0.00048488606,0.00003510164,0.00084959826],"genre_scores_gemma":[0.99414563,0.00085572066,0.0014132492,0.00004641871,0.00000745656,0.000016228172,0.0007419048,0.00001606527,0.0027572731],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991584,0.0000063696334,0.0000035679907,0.000032749263,0.000020370817,0.000021022028],"domain_scores_gemma":[0.9999162,0.000008648003,0.000025245889,0.0000062811782,0.000015631354,0.000028013064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009044868,0.00027157608,0.00020434258,0.0004219625,0.00025500666,0.0003070201,0.0001747445,0.00024186958,0.0014356949],"category_scores_gemma":[0.0001144012,0.00018395692,0.00016990917,0.00025028505,0.00020121451,0.00024860504,0.00031623003,0.00028496914,0.0004802984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010310944,0.000005894419,0.000922187,0.000027867878,0.000009279557,0.000055665558,0.00002542988,0.000025596892,0.99822336,0.000030361045,0.000017263012,0.0005540778],"study_design_scores_gemma":[0.000009033883,0.00015323288,0.15988524,0.000012868079,0.000048360358,0.0006724395,0.00023788099,0.0011471716,0.8349327,0.00015702458,0.0027278394,0.000016228287],"about_ca_topic_score_codex":0.0007441417,"about_ca_topic_score_gemma":0.0011178113,"teacher_disagreement_score":0.0014356949,"about_ca_system_score_codex":0.0001930743,"about_ca_system_score_gemma":0.00011759131,"threshold_uncertainty_score":0.0048028827},"labels":[],"label_agreement":null},{"id":"W4399264501","doi":"10.1016/j.mcpro.2024.100793","title":"Galectin-3-Binding Protein Inhibits Extracellular Heparan 6-O-Endosulfatase Sulf-2","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; Office of the Director; University of Toronto; Chinese Academy of Sciences; Ministerstvo Školství, Mládeže a Tělovýchovy; Georgetown University; European Commission; National Cancer Research Institute","keywords":"Spheroid; Chemistry; Extracellular; Matrigel; Chondroitin sulfate; Cell culture; In vitro; Plasma protein binding; Heparan sulfate; Cell biology; Biochemistry; Biophysics; Cell; Glycosaminoglycan; Biology","score_opus":0.010680867251010246,"score_gpt":0.2574307729038823,"score_spread":0.24674990565287203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399264501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927955,0.0011982544,0.00334414,0.0001843336,0.000035750585,0.000035315446,0.00038310565,0.0000947659,0.0019288203],"genre_scores_gemma":[0.9934227,0.0004948835,0.002094261,0.00014993924,0.000011930355,0.00003131382,0.0011262299,0.000025522251,0.002643195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997782,0.000057538324,0.000015695443,0.000024065253,0.000065587556,0.000058961654],"domain_scores_gemma":[0.99992263,0.00001906981,0.0000158307,0.000011716992,0.000012448574,0.00001834515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013332996,0.00037965085,0.00025576953,0.00018279749,0.00012579621,0.00026471165,0.00023112954,0.00023988006,0.0009805537],"category_scores_gemma":[0.00012883906,0.00010666357,0.00036947726,0.00016317287,0.000167963,0.00011304245,0.00021674793,0.0004996572,0.00032532695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003666677,0.000030517549,0.00009838445,0.000015487327,0.000005898576,0.000011993911,0.000005004572,0.00003934746,0.99926084,0.00003707497,0.00004545372,0.00041317169],"study_design_scores_gemma":[0.000010984421,0.0001516341,0.0036204043,0.0000028169059,0.000010325838,0.00010380691,0.00001025205,0.0013340001,0.9930326,0.000023090532,0.0016976424,0.0000023578837],"about_ca_topic_score_codex":0.0015435301,"about_ca_topic_score_gemma":0.0017477907,"teacher_disagreement_score":0.0015435301,"about_ca_system_score_codex":0.00044598512,"about_ca_system_score_gemma":0.00024121301,"threshold_uncertainty_score":0.003280282},"labels":[],"label_agreement":null},{"id":"W4399555742","doi":"10.1016/j.mcpro.2024.100798","title":"Rescoring Peptide Spectrum Matches: Boosting Proteomics Performance by Integrating Peptide Property Predictors Into Peptide Identification","year":2024,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Roots Exchange; European Research Council; Horizon 2020 Framework Programme; H2020 Marie Skłodowska-Curie Actions; FP7 Coordination of Research Activities; Bundesministerium für Bildung und Forschung; European Commission","keywords":"Peptide; Boosting (machine learning); Proteomics; Computer science; Identification (biology); Computational biology; Chemistry; Artificial intelligence; Biology; Biochemistry; Gene","score_opus":0.015678492756053188,"score_gpt":0.2722396232600725,"score_spread":0.2565611305040193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399555742","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010076762,0.88936794,0.09453195,0.00043794105,0.00035701905,0.000092681454,0.00034167114,0.0010609844,0.0037330757],"genre_scores_gemma":[0.048714127,0.85277265,0.091772616,0.0007426266,0.00044701813,0.00018438058,0.0012644544,0.00022818088,0.0038738383],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99932945,0.00008876486,0.00003844118,0.00015932423,0.0003393446,0.00004461769],"domain_scores_gemma":[0.9992111,0.00042153164,0.00010171738,0.00004945509,0.00018577868,0.000030389234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016015589,0.001424492,0.001742802,0.0023480677,0.00019990459,0.0011576776,0.0013680323,0.00094785524,0.0012075636],"category_scores_gemma":[0.0017865305,0.00047919856,0.0008885894,0.0023563886,0.00049593457,0.0012618918,0.0007768987,0.0015473355,0.0015251248],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013491602,0.00009082797,0.00062751625,0.007413064,0.00027376454,0.00018880234,0.00003879331,0.0038968478,0.0486088,0.00327702,0.0046864967,0.9307631],"study_design_scores_gemma":[0.00014363366,0.0013989109,0.0069147595,0.0027942418,0.001191572,0.0063652014,0.00012843158,0.06353008,0.2810113,0.018044762,0.6181044,0.00037266684],"about_ca_topic_score_codex":0.0005885207,"about_ca_topic_score_gemma":0.0006822662,"teacher_disagreement_score":0.0023480677,"about_ca_system_score_codex":0.00048049024,"about_ca_system_score_gemma":0.0007863917,"threshold_uncertainty_score":0.008469999},"labels":[],"label_agreement":null},{"id":"W4399708580","doi":"10.1016/j.mcpro.2024.100801","title":"Profiling Proteins and Phosphorylation Sites During T Cell Activation Using an Integrated Thermal Shift Assay","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Biosensing Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Columbia College","funders":"National Institute of General Medical Sciences; National Cancer Institute; Ludwig Center at Harvard; National Institutes of Health; Harvard Medical School; Glenn Foundation for Medical Research","keywords":"Phosphorylation; Protein phosphorylation; Cell biology; Biology; Effector; Signal transduction; Proteomics; Chemistry; Biochemistry; Protein kinase A; Gene","score_opus":0.010714105409424954,"score_gpt":0.2474803726920007,"score_spread":0.23676626728257577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399708580","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8890955,0.002306879,0.104717135,0.00015615288,0.00009251478,0.000117265045,0.0012173435,0.00049281685,0.0018042976],"genre_scores_gemma":[0.879538,0.0026567052,0.11197808,0.00026672063,0.00007701446,0.00030807636,0.0016546679,0.000117078096,0.0034035658],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995535,0.00006003978,0.000025756235,0.00014154168,0.00016338492,0.000055838696],"domain_scores_gemma":[0.9995572,0.00011335628,0.0001337226,0.000035403642,0.00009168707,0.00006871853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047635805,0.0005545372,0.00040702274,0.0008162635,0.00034001126,0.00056891877,0.0004001504,0.00044778854,0.0012169726],"category_scores_gemma":[0.000615052,0.00034289522,0.0004562315,0.0006777831,0.00039227636,0.0004655105,0.0003689644,0.0011383069,0.00051854807],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006329984,0.000011808425,0.00029782837,0.000023953933,0.000011891648,0.000010183015,0.000014182007,0.000086586915,0.9984274,0.000037196303,0.00002203724,0.0009935995],"study_design_scores_gemma":[0.000008664579,0.00025375182,0.013789737,0.000007108566,0.000053634256,0.00026909742,0.00004115149,0.005125018,0.97939837,0.00013294103,0.0008942031,0.00002635552],"about_ca_topic_score_codex":0.00040525803,"about_ca_topic_score_gemma":0.0009201848,"teacher_disagreement_score":0.0012169726,"about_ca_system_score_codex":0.00026899093,"about_ca_system_score_gemma":0.00022392305,"threshold_uncertainty_score":0.004071176},"labels":[],"label_agreement":null},{"id":"W4399708581","doi":"10.1016/j.mcpro.2024.100802","title":"Chemo-Phosphoproteomic Profiling with ATR Inhibitors Berzosertib and Gartisertib Uncovers New Biomarkers and DNA Damage Response Regulators","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Hôtel-Dieu de Québec","funders":"Merck KGaA; Medical Research Council; Fonds de Recherche du Québec - Santé; Institute for Digital Research and Education, University of California, Los Angeles; Medical Research Council Canada; Fondation CHU de Québec","keywords":"DNA damage; Biology; DNA repair; RAD51; Phosphorylation; Proteomics; DNA; Computational biology; DNA Damage Repair; DNA replication; Cell biology; Molecular biology; Genetics; Gene","score_opus":0.0035272579743928084,"score_gpt":0.19660767238362606,"score_spread":0.19308041440923324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399708581","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98451036,0.0032706244,0.00676353,0.00021392773,0.000038573977,0.00009383785,0.0031018427,0.00022925042,0.0017781018],"genre_scores_gemma":[0.9611914,0.0041775443,0.019052466,0.00039313265,0.00003000885,0.00022599124,0.007883809,0.00011175211,0.0069339154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998273,0.000012820629,0.00000946503,0.000044662145,0.00005946307,0.000046341607],"domain_scores_gemma":[0.9999279,0.000010160234,0.000022194892,0.00000590391,0.000014593516,0.000019373136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019932904,0.00050636893,0.0005409603,0.0005288581,0.00022833158,0.00041504405,0.00024131146,0.00036895243,0.0016882425],"category_scores_gemma":[0.00017719332,0.00020856546,0.0004581148,0.0005030514,0.00019035941,0.0002996292,0.00022337526,0.00054602453,0.00055890594],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021472432,0.000025356809,0.00042555697,0.000049924303,0.000017708508,0.000027370874,0.000007961551,0.00009797149,0.9971079,0.000022355973,0.00007268136,0.001930442],"study_design_scores_gemma":[0.000024638372,0.0004512895,0.028074468,0.000007739304,0.00005865567,0.00038639898,0.0000385001,0.0019990178,0.96651644,0.00008578978,0.0023450917,0.000011928662],"about_ca_topic_score_codex":0.000477049,"about_ca_topic_score_gemma":0.0010564015,"teacher_disagreement_score":0.0016882425,"about_ca_system_score_codex":0.00026440542,"about_ca_system_score_gemma":0.00022982685,"threshold_uncertainty_score":0.005647719},"labels":[],"label_agreement":null},{"id":"W4401833773","doi":"10.1016/j.mcpro.2024.100832","title":"LC-SRM Combined With Machine Learning Enables Fast Identification and Quantification of Bacterial Pathogens in Urinary Tract Infections","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Université Laval","funders":"Génome Québec","keywords":"Gold standard (test); Urine; Urinary system; Microbiological culture; Medicine; Microbiology; Bacteria; Chromatography; Computational biology; Biology; Chemistry; Internal medicine","score_opus":0.008816396566081288,"score_gpt":0.22414356439205718,"score_spread":0.21532716782597588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401833773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.50863904,0.006631559,0.47447494,0.00070885767,0.00018847319,0.00021443039,0.00093657244,0.004905801,0.0033003967],"genre_scores_gemma":[0.572723,0.002182448,0.4211139,0.0004963045,0.000108738546,0.0001910331,0.0005887618,0.00025189822,0.0023439382],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99797577,0.0005998473,0.00010747636,0.00047371545,0.0007120639,0.00013125861],"domain_scores_gemma":[0.999119,0.00037498964,0.00014417019,0.000114299204,0.00019925449,0.000048381637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020340397,0.0008903714,0.000847284,0.0013599707,0.00037394444,0.00082000124,0.00050118525,0.0009958165,0.0007737258],"category_scores_gemma":[0.0017442361,0.00045595807,0.0005405832,0.0007694484,0.0005097453,0.00071172393,0.00072690996,0.00079366745,0.0009368646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011044276,0.00009087113,0.0016056598,0.00014298926,0.000040459876,0.00006891874,0.000028889679,0.0013067354,0.9535465,0.0002111391,0.0003099326,0.04253745],"study_design_scores_gemma":[0.000018236693,0.00038019227,0.009095063,0.000033349468,0.00005717909,0.0007045531,0.000026469503,0.06740636,0.91882956,0.0006426476,0.0027285083,0.00007788683],"about_ca_topic_score_codex":0.00065897906,"about_ca_topic_score_gemma":0.0010974052,"teacher_disagreement_score":0.0020340397,"about_ca_system_score_codex":0.00038087106,"about_ca_system_score_gemma":0.0006971456,"threshold_uncertainty_score":0.010757148},"labels":[],"label_agreement":null},{"id":"W4402512232","doi":"10.1016/j.mcpro.2024.100840","title":"metaExpertPro: A Computational Workflow for Metaproteomics Spectral Library Construction and Data-Independent Acquisition Mass Spectrometry Data Analysis","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Turun Yliopisto; National Natural Science Foundation of China; Westlake University; University of Ottawa","keywords":"Metaproteomics; Workflow; Mass spectrometry; Computer science; Data mining; Computational biology; Information retrieval; Chemistry; Proteomics; Chromatography; Database; Biology","score_opus":0.01830352981102481,"score_gpt":0.2810021132251137,"score_spread":0.2626985834140889,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402512232","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013837467,0.0004164117,0.75491214,0.00029000576,0.00014025095,0.0004938543,0.009955677,0.21792673,0.0020274534],"genre_scores_gemma":[0.06508104,0.0005248174,0.88337475,0.0005860235,0.0000667161,0.0017761235,0.026522497,0.019721169,0.0023468207],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9987357,0.00017723949,0.00015354021,0.0004317429,0.00035614206,0.00014565258],"domain_scores_gemma":[0.99794143,0.00083791395,0.00018144878,0.00041815906,0.0003880491,0.00023298197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0042706225,0.0038272953,0.0022101842,0.0026075891,0.001292839,0.0034890037,0.0046338467,0.0013441414,0.009808066],"category_scores_gemma":[0.004911645,0.0020599666,0.0030504758,0.0018003029,0.0009814258,0.0025360773,0.0038540727,0.0038642224,0.005137961],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0055730427,0.0011995004,0.019672614,0.0061492226,0.00486238,0.0026168746,0.0024639054,0.095585465,0.17090759,0.02541314,0.21051204,0.45504427],"study_design_scores_gemma":[0.0008323363,0.00030179543,0.0054897075,0.00026077102,0.0003687825,0.00082903483,0.00043351453,0.7859093,0.09046487,0.029259471,0.08537395,0.00047644187],"about_ca_topic_score_codex":0.0040384457,"about_ca_topic_score_gemma":0.0065949312,"teacher_disagreement_score":0.009808066,"about_ca_system_score_codex":0.0011797807,"about_ca_system_score_gemma":0.004372272,"threshold_uncertainty_score":0.032811224},"labels":[],"label_agreement":null},{"id":"W4402735200","doi":"10.1016/j.mcpro.2024.100849","title":"NovoBoard: A Comprehensive Framework for Evaluating the False Discovery Rate and Accuracy of De Novo Peptide Sequencing","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; Bioinformatics Solutions (Canada)","funders":"","keywords":"False discovery rate; Computational biology; Computer science; Biology; Genetics; Gene","score_opus":0.032257456790014925,"score_gpt":0.3017138534780841,"score_spread":0.2694563966880692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402735200","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007303716,0.0019902391,0.98016286,0.00017335954,0.00010025304,0.00029227053,0.0017583407,0.0075437543,0.00067518506],"genre_scores_gemma":[0.08909867,0.0011062421,0.9021205,0.00029081167,0.0001246008,0.00084985927,0.0046087443,0.0011982239,0.00060229114],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.97258085,0.01156428,0.0028034467,0.003347408,0.008927047,0.0007769723],"domain_scores_gemma":[0.9270106,0.047143262,0.0092342375,0.0062402952,0.009310364,0.0010612543],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.051717024,0.004616134,0.003495404,0.010682595,0.0013218411,0.0043277834,0.005215144,0.0030299083,0.0016424655],"category_scores_gemma":[0.088895835,0.0013399828,0.0029982603,0.003557259,0.0018783289,0.0037565415,0.0038432209,0.0033894966,0.0009032368],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002175742,0.000644234,0.035824835,0.002891663,0.0037937907,0.0007414155,0.00039146832,0.42611918,0.0390325,0.03306771,0.022158265,0.4331592],"study_design_scores_gemma":[0.00016848947,0.00074280164,0.0065944814,0.00026962414,0.00048894197,0.000807551,0.00007952066,0.9136936,0.030971998,0.030931363,0.014898661,0.00035297094],"about_ca_topic_score_codex":0.0052549713,"about_ca_topic_score_gemma":0.005602968,"teacher_disagreement_score":0.94828296,"about_ca_system_score_codex":0.0026608368,"about_ca_system_score_gemma":0.0047661257,"threshold_uncertainty_score":0.27350903},"labels":[],"label_agreement":null},{"id":"W4403267409","doi":"10.1016/j.mcpro.2024.100855","title":"Retinal Proteome Profiling of Inherited Retinal Degeneration Across Three Different Mouse Models Suggests Common Drug Targets in Retinitis Pigmentosa","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Eye Institute; Terveyden Tutkimuksen Toimikunta; National Institutes of Health; Business Finland; De Blindas Vänner; University of California, Irvine; University of Ottawa; Sigrid Juséliuksen Säätiö; Silmä- ja kudospankkisäätiö; Emil Aaltosen Säätiö; Research to Prevent Blindness; Päivikki ja Sakari Sohlbergin Säätiö; Canadian Institute for Advanced Research; Academy of Finland","keywords":"Retinitis pigmentosa; Retinal degeneration; Retinal; Proteome; Gene therapy of the human retina; Drug; Biology; Profiling (computer programming); Computational biology; Ophthalmology; Genetics; Medicine; Pharmacology; Computer science","score_opus":0.010952055593744462,"score_gpt":0.24425127619325684,"score_spread":0.23329922059951239,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403267409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9780488,0.002191568,0.012571286,0.00024367216,0.000073586016,0.0000828652,0.0051473617,0.00034075807,0.0013001557],"genre_scores_gemma":[0.96272856,0.0032812993,0.02250608,0.0004515775,0.000022275191,0.00040217012,0.0065022786,0.0001947233,0.0039111427],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995981,0.000039424755,0.000058657617,0.00013904591,0.00011551014,0.000049333845],"domain_scores_gemma":[0.9996495,0.000028951023,0.00015286941,0.00004319206,0.000059217884,0.00006617538],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003697727,0.00043545372,0.00031606815,0.00093053235,0.0003083819,0.00050660764,0.00025219683,0.0005466674,0.00065268495],"category_scores_gemma":[0.00022286853,0.00020784466,0.0006727422,0.00045456522,0.00028357876,0.0003179553,0.00037177154,0.0009285352,0.00026925263],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015637255,0.000026671867,0.0009098941,0.000043812768,0.000019839532,0.00005894163,0.000028434299,0.000040054834,0.99748284,0.000062131636,0.00006219441,0.0011088955],"study_design_scores_gemma":[0.000040003473,0.0007591662,0.084350705,0.00005212454,0.00019285812,0.0014620451,0.00020008835,0.0015010484,0.9063872,0.00023612463,0.0047805146,0.000038140653],"about_ca_topic_score_codex":0.00089575467,"about_ca_topic_score_gemma":0.0011645983,"teacher_disagreement_score":0.00093053235,"about_ca_system_score_codex":0.00031723466,"about_ca_system_score_gemma":0.00020248146,"threshold_uncertainty_score":0.002301693},"labels":[],"label_agreement":null},{"id":"W4403274154","doi":"10.1016/j.mcpro.2024.100853","title":"Hydrogen/Deuterium Exchange Mass Spectrometry: Fundamentals, Limitations, and Opportunities","year":2024,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mass spectrometry; Hydrogen–deuterium exchange; Deuterium; Chemistry; Hydrogen; Chromatography; Physics; Nuclear physics; Organic chemistry","score_opus":0.07401943343148676,"score_gpt":0.2934976335172748,"score_spread":0.21947820008578806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403274154","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007031764,0.99392915,0.0018283279,0.00073150126,0.00044464547,0.00000668065,0.000047779,0.000031475836,0.002277374],"genre_scores_gemma":[0.0042325365,0.9911074,0.0020860573,0.00037447756,0.000273347,0.00001351165,0.00007051615,0.000008226795,0.0018340321],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.999673,0.000050256156,0.000021564665,0.000062617495,0.0001513797,0.000041154748],"domain_scores_gemma":[0.9995772,0.00020480689,0.000050412815,0.00003099337,0.000108798464,0.000027805048],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017128289,0.000794205,0.0008019609,0.0014686008,0.0002605059,0.0011396544,0.0011251871,0.0011037119,0.0024510208],"category_scores_gemma":[0.00069781626,0.0004264627,0.0003608746,0.0016272932,0.0008483241,0.0015303341,0.000881216,0.0020606194,0.0021276616],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008701427,0.000052639745,0.00036431363,0.009177362,0.00012134277,0.00019478334,0.000048692444,0.00040240248,0.01921835,0.011877845,0.02357299,0.93488216],"study_design_scores_gemma":[0.000013446808,0.00010400064,0.0009502177,0.0010262928,0.000079705234,0.00093692925,0.000060365765,0.00047519902,0.014609172,0.0056614643,0.9760468,0.000036338115],"about_ca_topic_score_codex":0.00079106435,"about_ca_topic_score_gemma":0.0016619801,"teacher_disagreement_score":0.0024510208,"about_ca_system_score_codex":0.00063220254,"about_ca_system_score_gemma":0.00083925476,"threshold_uncertainty_score":0.009058416},"labels":[],"label_agreement":null},{"id":"W4406748501","doi":"10.1016/j.mcpro.2025.100913","title":"A Primer on Proteomic Characterization of Intercellular Communication in a Virus Microenvironment","year":2025,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; International Microbiome Centre, University of Calgary; National Institutes of Health; Stand Up To Cancer; Paul G. Allen Frontiers Group; National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Primer (cosmetics); Intracellular; Cell biology; Proteomics; Computational biology; Biology; Chemistry; Biochemistry; Gene","score_opus":0.009840877641993366,"score_gpt":0.2628536330072018,"score_spread":0.25301275536520845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406748501","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019945952,0.8875782,0.05781935,0.017494295,0.016077818,0.00019141249,0.0010598737,0.00047451464,0.017309966],"genre_scores_gemma":[0.0106581235,0.8437626,0.05836217,0.024952574,0.017158253,0.00045547335,0.001920475,0.00038408913,0.042346306],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993179,0.00018149365,0.00007806414,0.00012535075,0.0002523046,0.000044942026],"domain_scores_gemma":[0.9991804,0.00039675983,0.00008630492,0.000042769447,0.00021790825,0.00007592581],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012271601,0.0014711743,0.0010535085,0.0026655444,0.0005731668,0.001848675,0.00092729926,0.002506331,0.0061959373],"category_scores_gemma":[0.0015374105,0.0007147163,0.000853826,0.0019293432,0.0012389229,0.0037658142,0.001418522,0.004631243,0.006842974],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026580202,0.00023371447,0.0010365277,0.009750521,0.00020487355,0.00201545,0.00072645274,0.001206785,0.18874162,0.06952165,0.3751348,0.35116184],"study_design_scores_gemma":[0.000006458683,0.00012207823,0.0005861851,0.00069175515,0.000023392591,0.0019530823,0.00007337436,0.00029184786,0.010306861,0.008968251,0.9769399,0.000036891743],"about_ca_topic_score_codex":0.0003727873,"about_ca_topic_score_gemma":0.0006049437,"teacher_disagreement_score":0.0061959373,"about_ca_system_score_codex":0.0006625534,"about_ca_system_score_gemma":0.0005938001,"threshold_uncertainty_score":0.020727456},"labels":[],"label_agreement":null},{"id":"W4408108012","doi":"10.1016/j.mcpro.2025.100937","title":"PEPSeek-Mediated Identification of Novel Epitopes From Viral and Bacterial Pathogens and the Impact on Host Cell Immunopeptidomes","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"H2020 Marie Skłodowska-Curie Actions; Blood Cancer UK; International Max Planck Research School for Advanced Methods in Process and Systems Engineering; Innovative Medicines Initiative; Universiteit Utrecht; European Commission; Department of Health and Social Care; Georg-August-Universität Göttingen; National Institute for Health and Care Research; NIHR BioResource; Horizon 2020 Framework Programme; Cancer Research UK; International Max Planck Research School for Environmental, Cellular and Molecular Microbiology; Francis Crick Institute; HORIZON EUROPE Framework Programme; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Wellcome Trust; European Research Council; Center for Ocean Leadership; European Federation of Pharmaceutical Industries and Associations; NHS Blood and Transplant","keywords":"Epitope; Identification (biology); Host (biology); Virology; Computational biology; Biology; Microbiology; Antigen; Immunology; Genetics","score_opus":0.003008112812014577,"score_gpt":0.20520549207521557,"score_spread":0.202197379263201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408108012","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.73805606,0.0015371032,0.24165761,0.0003385159,0.00014803445,0.00016657237,0.0051029436,0.010513174,0.0024799183],"genre_scores_gemma":[0.6931238,0.0011191017,0.2884599,0.00025997285,0.000050080045,0.00035206508,0.007800606,0.0032944528,0.0055399467],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996835,0.000043541015,0.000025559315,0.00010605232,0.000103578735,0.00003792109],"domain_scores_gemma":[0.9994128,0.000280466,0.000079828045,0.000074816286,0.00007299638,0.00007915737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00087731564,0.00087108754,0.0007624276,0.0005082003,0.00033478026,0.0010748488,0.0004592779,0.000443225,0.002779061],"category_scores_gemma":[0.0009038635,0.00033565637,0.00049302354,0.000336318,0.00034671093,0.0010591702,0.0006500785,0.0011004768,0.0010212536],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008615156,0.00006168399,0.0018798658,0.0002141315,0.00005011823,0.00016813276,0.000085375934,0.0010075273,0.982511,0.0003638908,0.0006063722,0.012190374],"study_design_scores_gemma":[0.000034550416,0.00009682357,0.003850004,0.000008561996,0.0000147499895,0.00034192065,0.000026860997,0.014675591,0.97693515,0.00026417372,0.0037230935,0.000028454378],"about_ca_topic_score_codex":0.00026315852,"about_ca_topic_score_gemma":0.0003569875,"teacher_disagreement_score":0.002779061,"about_ca_system_score_codex":0.00031870094,"about_ca_system_score_gemma":0.0002784448,"threshold_uncertainty_score":0.009296894},"labels":[],"label_agreement":null},{"id":"W4409577468","doi":"10.1016/j.mcpro.2025.100974","title":"SysQuan: Repurposing SILAC Mice for the Cost-Effective Absolute Quantitation of the Human Proteome","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CancerCare Manitoba; Université de Montréal; Cegep de Saint Hyacinthe; University of Manitoba; Research Manitoba; Jewish General Hospital","funders":"Warren Y. Soper Charitable Trust; Fondation De Famille Alvin Segal; Terry Fox Research Institute; McGill University; Génome Québec; University of Manitoba; Genome Canada","keywords":"Stable isotope labeling by amino acids in cell culture; Repurposing; Proteome; Computational biology; Quantitative proteomics; Chemistry; Proteomics; Computer science; Biology; Biochemistry","score_opus":0.01164708280959296,"score_gpt":0.2938726226010188,"score_spread":0.28222553979142584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409577468","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.044345982,0.0031252515,0.8717137,0.0015032507,0.0009789361,0.0024716633,0.01268827,0.05636476,0.0068081035],"genre_scores_gemma":[0.10872056,0.0040806113,0.80982417,0.0025051772,0.00027687277,0.013538403,0.023776036,0.0138932625,0.023384972],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969074,0.00061601895,0.0002962447,0.00071010675,0.0012204541,0.00024972204],"domain_scores_gemma":[0.99773335,0.00054626813,0.0004184528,0.00064371974,0.0003965744,0.0002616292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0055138976,0.0026512824,0.0015346396,0.003813588,0.001373191,0.002662656,0.0036146494,0.0023014247,0.018298527],"category_scores_gemma":[0.0025565384,0.0024161153,0.0016743842,0.0009305781,0.0015962002,0.002286353,0.0027198843,0.0062062107,0.008927946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013710757,0.0002554448,0.00081219524,0.0010114398,0.00020447084,0.00030241808,0.0003796935,0.0008103206,0.9238603,0.0067361193,0.019218965,0.045037474],"study_design_scores_gemma":[0.0003182983,0.00044935505,0.0018119753,0.00021569771,0.000102877275,0.0007737659,0.000037685048,0.0093183685,0.87654644,0.0017585362,0.10856234,0.00010468658],"about_ca_topic_score_codex":0.0008343398,"about_ca_topic_score_gemma":0.001953744,"teacher_disagreement_score":0.018298527,"about_ca_system_score_codex":0.0009706133,"about_ca_system_score_gemma":0.0016328892,"threshold_uncertainty_score":0.061214685},"labels":[],"label_agreement":null},{"id":"W4410221222","doi":"10.1016/j.mcpro.2025.100988","title":"Temporal Wheat Proteome Remodeling by Deoxynivalenol Reveals Novel Detoxification Signatures and Strategies Across Cultivars","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canada Research Chairs; Ontario Ministry of Agriculture, Food and Rural Affairs; Ministry of Agriculture, Food and Rural Affairs; Canada Foundation for Innovation; Grain Farmers of Ontario","keywords":"Proteome; Detoxification (alternative medicine); Computational biology; Cultivar; Biology; Biotechnology; Botany; Bioinformatics; Medicine","score_opus":0.008833313485646045,"score_gpt":0.23000258500680457,"score_spread":0.22116927152115853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410221222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945161,0.0010108455,0.001659168,0.000117891694,0.000027536444,0.000021902899,0.0016042279,0.00005397496,0.0009883776],"genre_scores_gemma":[0.9922564,0.000691588,0.0013967771,0.0002904643,0.000010479199,0.000049978258,0.0029693104,0.000043446715,0.0022915674],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998299,0.000011014075,0.000013244397,0.00008487224,0.000026949652,0.00003398921],"domain_scores_gemma":[0.9998988,0.0000115935245,0.00003171433,0.000014467409,0.000022866992,0.000020537993],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001558884,0.00022881539,0.00033405842,0.00020381623,0.00024308008,0.0006587659,0.00016652189,0.0003330285,0.0007675805],"category_scores_gemma":[0.00015285838,0.00021966791,0.00037533,0.00027862936,0.00023667564,0.00046542354,0.00042971122,0.0006450757,0.0002909775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016120667,0.000015899937,0.0018772004,0.00003342069,0.000009986956,0.000030810403,0.00009893501,0.000028281333,0.9963342,0.00005006486,0.00007008066,0.0012899133],"study_design_scores_gemma":[0.00003285985,0.0006742118,0.60125214,0.00003537947,0.000098964956,0.0005928765,0.0009949263,0.0019653249,0.38588053,0.00041545735,0.008012685,0.00004472973],"about_ca_topic_score_codex":0.0010719708,"about_ca_topic_score_gemma":0.0018770216,"teacher_disagreement_score":0.0010719708,"about_ca_system_score_codex":0.00030807126,"about_ca_system_score_gemma":0.00015790263,"threshold_uncertainty_score":0.0025678277},"labels":[],"label_agreement":null},{"id":"W4410774925","doi":"10.1016/j.mcpro.2025.101000","title":"A Method for Comparing Proteins Measured in Serum and Plasma by Olink Proximity Extension Assay","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Pennsylvania Department of Health; National Institute of Child Health and Human Development; Alex's Lemonade Stand Foundation for Childhood Cancer","keywords":"Extension (predicate logic); Blood proteins; Computational biology; Chemistry; Computer science; Biology; Biochemistry","score_opus":0.013071070263484095,"score_gpt":0.2764976852488539,"score_spread":0.2634266149853698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410774925","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.054120485,0.004556549,0.9269772,0.0003973021,0.0006188968,0.0011053111,0.0021080845,0.005764185,0.004352017],"genre_scores_gemma":[0.0840399,0.003631127,0.896157,0.00050409517,0.00013632311,0.004781181,0.0033173636,0.00070710207,0.0067258896],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9823439,0.005173148,0.001581567,0.0049378294,0.005319408,0.00064408715],"domain_scores_gemma":[0.9874027,0.005248188,0.0030057295,0.0016097042,0.0022407838,0.0004927756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007697945,0.0033877043,0.0014335124,0.0066429563,0.0017164709,0.0026044461,0.0019111725,0.002146703,0.0034496887],"category_scores_gemma":[0.018294206,0.0015780681,0.0019398541,0.004074065,0.0020907351,0.0023872298,0.003117337,0.0040615723,0.0046005077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008051038,0.00026970223,0.0049442444,0.0010788039,0.00025685146,0.00026253064,0.0006345109,0.0010170785,0.9332972,0.0029300412,0.0017361243,0.05276776],"study_design_scores_gemma":[0.00010208629,0.00090960064,0.010568033,0.00028222057,0.00030528943,0.0011876454,0.00027470978,0.013510006,0.9342361,0.0029391993,0.035440005,0.00024509276],"about_ca_topic_score_codex":0.0007962377,"about_ca_topic_score_gemma":0.0013097398,"teacher_disagreement_score":0.007697945,"about_ca_system_score_codex":0.0010665196,"about_ca_system_score_gemma":0.0018941838,"threshold_uncertainty_score":0.040711105},"labels":[],"label_agreement":null},{"id":"W4411475011","doi":"10.1016/j.mcpro.2025.101017","title":"Driving Therapeutic Innovation in Neurodegenerative Disease With Hydrogen Deuterium eXchange Mass Spectrometry","year":2025,"lang":"en","type":"review","venue":"Molecular & Cellular Proteomics","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"Alzheimer’s Research UK; University of Oxford","keywords":"Hydrogen–deuterium exchange; Mass spectrometry; Chemistry; Deuterium; Chromatography; Physics; Nuclear physics","score_opus":0.028203651950603516,"score_gpt":0.2789904981827122,"score_spread":0.2507868462321087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411475011","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022699585,0.99668056,0.0005961002,0.00037579346,0.00033839286,0.000012128337,0.000018394161,0.000016240734,0.0017353022],"genre_scores_gemma":[0.0012756645,0.9966911,0.00062809244,0.00031206128,0.00016009141,0.000013857776,0.000032295662,0.0000031351758,0.000883557],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99973434,0.00005036019,0.00002659425,0.00004154096,0.00011223496,0.000034899025],"domain_scores_gemma":[0.9997533,0.000114813934,0.00003149468,0.000008651626,0.00006444661,0.000027268776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010246851,0.0009424481,0.0010969124,0.0018541993,0.00024445134,0.0010467381,0.0009159899,0.0015379691,0.0023597742],"category_scores_gemma":[0.0006822353,0.00030575765,0.0004910673,0.0014424456,0.000535225,0.0013773455,0.0009050731,0.0017712193,0.0022921087],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007752004,0.00009054536,0.0001747256,0.017303659,0.00014466072,0.00029825437,0.000075966964,0.0005359931,0.007174966,0.012959602,0.029937234,0.93122685],"study_design_scores_gemma":[0.000021878315,0.00014689604,0.0004695738,0.0017564447,0.00007662727,0.00084720115,0.00005050698,0.0002068246,0.002013362,0.0036912144,0.990695,0.000024449822],"about_ca_topic_score_codex":0.00065873575,"about_ca_topic_score_gemma":0.0011863229,"teacher_disagreement_score":0.0023597742,"about_ca_system_score_codex":0.0006909855,"about_ca_system_score_gemma":0.0008568509,"threshold_uncertainty_score":0.007894218},"labels":[],"label_agreement":null},{"id":"W4411674098","doi":"10.1016/j.mcpro.2025.101024","title":"A Roadmap for Improving Reliability and Data Sharing in Crosslinking Mass Spectrometry","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"H2020 European Research Council; Deutsche Forschungsgemeinschaft","keywords":"Mass spectrometry; Reliability (semiconductor); Chemistry; Computer science; Chromatography; Physics","score_opus":0.01529237879549221,"score_gpt":0.28357252345415,"score_spread":0.2682801446586578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411674098","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":"reproducibility","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":"reproducibility","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013293501,0.026647683,0.75348455,0.17703083,0.004765039,0.0015879844,0.0017624099,0.012343886,0.009084138],"genre_scores_gemma":[0.044382215,0.010362195,0.9190274,0.0117379585,0.0026697475,0.0018987784,0.0055780136,0.0023834943,0.001960278],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.85647184,0.08487328,0.010673234,0.012352673,0.028685637,0.0069433246],"domain_scores_gemma":[0.45066297,0.19739822,0.016281873,0.14747925,0.16161138,0.026566327],"candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.36869556,0.0043558422,0.0050819363,0.008544225,0.0038935055,0.019574326,0.020864263,0.012370453,0.01371541],"category_scores_gemma":[0.35102102,0.0029743665,0.00568975,0.007848734,0.010939588,0.05151323,0.026148248,0.016614838,0.009074603],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015891832,0.0010529787,0.014068444,0.0051246383,0.0010630048,0.0007120694,0.003991143,0.019472774,0.019712416,0.23092306,0.12118168,0.5811085],"study_design_scores_gemma":[0.0005245429,0.0013490603,0.006038897,0.005766889,0.0004739262,0.00087973016,0.0029975846,0.036824413,0.014209158,0.48025575,0.45001277,0.0006673374],"about_ca_topic_score_codex":0.006773985,"about_ca_topic_score_gemma":0.0028839358,"teacher_disagreement_score":0.63130444,"about_ca_system_score_codex":0.007102506,"about_ca_system_score_gemma":0.033018634,"threshold_uncertainty_score":0.7785108},"labels":[],"label_agreement":null},{"id":"W4412021200","doi":"10.1016/j.mcpro.2025.101027","title":"EGFR Phosphorylates and Associates with EFNB1 to Regulate Cell Adhesion to Fibronectin","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Axon Guidance and Neuronal Signaling","field":"Neuroscience","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec; Royal University Hospital; Université Laval; Centre hospitalier de l'Université Laval","funders":"Fonds de Recherche du Québec - Santé; Centre Hospitalier Universitaire de Québec; Mitacs; Fonds de recherche du Québec – Nature et technologies; Université Laval","keywords":"Fibronectin; Phosphorylation; Cell adhesion; Adhesion; Cell biology; Chemistry; Fibronectins; Cell; Computational biology; Biology; Biochemistry","score_opus":0.006378990752231931,"score_gpt":0.21950848793017447,"score_spread":0.21312949717794255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412021200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993764,0.002290775,0.0016138494,0.00009891666,0.000018153063,0.000011424517,0.00020077203,0.000036883685,0.0019652604],"genre_scores_gemma":[0.99418676,0.0007646629,0.00071789295,0.000050566516,0.000009228822,0.000015846676,0.00046188838,0.000011494176,0.0037816197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998851,0.000008929291,0.00000521497,0.00002937103,0.000031661042,0.000039633713],"domain_scores_gemma":[0.9999578,0.0000050512754,0.000013564611,0.0000031981278,0.000005792056,0.00001448041],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000063969106,0.0002474522,0.00013733526,0.00018079573,0.00022170095,0.00022223702,0.00015259888,0.00016353517,0.0013968545],"category_scores_gemma":[0.00008827598,0.00014740703,0.00020541056,0.00011366147,0.00010463365,0.0001764227,0.0002355862,0.00030028235,0.0005583272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043891232,0.000009810742,0.00030856507,0.000017041906,0.0000026190448,0.000050067698,0.000010779915,0.000028671588,0.9989405,0.000055440294,0.00003424893,0.0004983014],"study_design_scores_gemma":[0.000017385913,0.00007522854,0.07641295,0.000009987213,0.00001391746,0.00071145623,0.00005832675,0.0023441378,0.9164596,0.00011467942,0.0037733428,0.0000089754585],"about_ca_topic_score_codex":0.0011559448,"about_ca_topic_score_gemma":0.0017444171,"teacher_disagreement_score":0.0013968545,"about_ca_system_score_codex":0.00040637626,"about_ca_system_score_gemma":0.00012701178,"threshold_uncertainty_score":0.004673004},"labels":[],"label_agreement":null},{"id":"W4412056519","doi":"10.1016/j.mcpro.2026.101562","title":"Expanding the Global Map of Protein Post Translational Modifications with Immunoaffinity Enrichment and nDIA Analysis on the Orbitrap Astral Mass Spectrometer","year":2025,"lang":"en","type":"preprint","venue":"Molecular & Cellular Proteomics","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada)","funders":"","keywords":"Orbitrap; Mass spectrometry; Chemistry; Chromatography","score_opus":0.009996596327650329,"score_gpt":0.24144102338188714,"score_spread":0.23144442705423682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412056519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78635174,0.004298664,0.19374436,0.0006184243,0.00012679862,0.00023874441,0.0046166824,0.0026648107,0.007339718],"genre_scores_gemma":[0.6252742,0.003225595,0.35528713,0.0008183704,0.00006513458,0.00039570843,0.008623505,0.0006048023,0.0057055154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99961036,0.00004522273,0.000030728603,0.00012058382,0.00014232386,0.000050818762],"domain_scores_gemma":[0.9996604,0.00006446959,0.00006786926,0.000055385564,0.00011768141,0.000034054858],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005352066,0.0007334698,0.00045270193,0.0011352007,0.00047649,0.00062306726,0.00043245626,0.00044645666,0.0021028446],"category_scores_gemma":[0.0005523536,0.00025044737,0.00049052434,0.00088001613,0.00027965053,0.00051149965,0.0006012291,0.0009881444,0.0009490394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006792763,0.00001726538,0.0011070037,0.00008879429,0.00002404669,0.00006782652,0.00002765219,0.000080461985,0.9911107,0.00015617715,0.00018121567,0.0070709586],"study_design_scores_gemma":[0.000016879156,0.00020994584,0.02755297,0.00003444231,0.000090459995,0.0011864605,0.000090182206,0.007479285,0.95215356,0.00038011713,0.010773657,0.000031996417],"about_ca_topic_score_codex":0.0008518691,"about_ca_topic_score_gemma":0.0018004143,"teacher_disagreement_score":0.0021028446,"about_ca_system_score_codex":0.0003525769,"about_ca_system_score_gemma":0.00051185256,"threshold_uncertainty_score":0.007034719},"labels":[],"label_agreement":null},{"id":"W4413159407","doi":"10.1016/j.mcpro.2025.101050","title":"A Novel Hybrid High-Speed Mass Spectrometer Allows Rapid Translation From Biomarker Candidates to Targeted Clinical Tests Using 15N-Labeled Proteins","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada)","funders":"Leibniz-Gemeinschaft; Bayerisches Staatsministerium für Wissenschaft und Kunst; Horizon 2020 Framework Programme; International Max Planck Research School for Environmental, Cellular and Molecular Microbiology; International Max Planck Research School for Advanced Methods in Process and Systems Engineering; Max-Planck-Gesellschaft; European Commission","keywords":"Mass spectrometry; Translation (biology); Biomarker; Computational biology; Proteomics; Computer science; Chemistry; Biology; Chromatography; Genetics; Gene; Messenger RNA","score_opus":0.024278283634885323,"score_gpt":0.2974750790488634,"score_spread":0.27319679541397807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413159407","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.44133738,0.0046432107,0.53632456,0.0008954756,0.0005868776,0.00057348766,0.0017302177,0.006090889,0.007817844],"genre_scores_gemma":[0.3895907,0.001329384,0.59939075,0.0011993336,0.0002744709,0.000413775,0.0016385576,0.00022498917,0.0059380066],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988348,0.00018657732,0.000061597246,0.00034642403,0.00052246824,0.000048201324],"domain_scores_gemma":[0.9991934,0.0002693251,0.00018053185,0.00008287759,0.00018788713,0.0000860397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018254685,0.00075315835,0.00055953435,0.0009993855,0.0003241326,0.0008978097,0.0007307356,0.0012636905,0.0015749467],"category_scores_gemma":[0.0012021145,0.00038285795,0.00042695954,0.0004620791,0.00050807564,0.0010007317,0.00088614,0.00056896487,0.00088552217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034641055,0.00006922498,0.0019385016,0.00014173449,0.00008229228,0.00006069426,0.000026855405,0.0006568798,0.96055967,0.0010469056,0.001024732,0.034046073],"study_design_scores_gemma":[0.00021262585,0.0023870277,0.010119545,0.00004342805,0.00017843899,0.0032943478,0.0000779401,0.062869884,0.89160615,0.001808173,0.027243072,0.0001592898],"about_ca_topic_score_codex":0.00021906682,"about_ca_topic_score_gemma":0.0004406317,"teacher_disagreement_score":0.0018254685,"about_ca_system_score_codex":0.00033597604,"about_ca_system_score_gemma":0.0004960352,"threshold_uncertainty_score":0.009654105},"labels":[],"label_agreement":null},{"id":"W4414919583","doi":"10.1016/j.mcpro.2025.101083","title":"Whole Blood Proteome Dynamics Defines Predictive Diagnostic and Prognostic Signatures of Cryptococcal Infection","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thermo Fisher Scientific (Canada); University of Guelph","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Canada Foundation for Innovation","keywords":"Cryptococcus neoformans; Proteome; Immune system; Cryptococcosis; Proteomics; Cryptococcus; Pathogen; Virulence","score_opus":0.00417082832102181,"score_gpt":0.2248279275538393,"score_spread":0.22065709923281748,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414919583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912998,0.002106306,0.0044251336,0.00011587256,0.000028921902,0.000026546357,0.0011384913,0.0000862897,0.0007726293],"genre_scores_gemma":[0.9943083,0.0010774242,0.0032057916,0.00010027987,0.00002767484,0.00002305023,0.00085509743,0.000013885107,0.00038863596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998227,0.000022742553,0.000010366129,0.00006642366,0.00004067629,0.000037128306],"domain_scores_gemma":[0.9998084,0.000032133587,0.000071020855,0.000014850337,0.000033999604,0.000039693914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003728454,0.00041028453,0.00037871444,0.0007247764,0.00017187152,0.00078132213,0.00013603296,0.00054457906,0.0005996847],"category_scores_gemma":[0.0004916354,0.0001580189,0.00017310667,0.0004949864,0.00024793585,0.00036168212,0.00030742842,0.0005279573,0.00023297743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015112063,0.00011686293,0.086837776,0.0001736836,0.00008549303,0.0003404913,0.00015026635,0.0007127094,0.89153415,0.00020880128,0.0006415317,0.017687064],"study_design_scores_gemma":[0.00002712253,0.00076841674,0.7297207,0.00007237706,0.00020494426,0.0022671917,0.0003878552,0.017554909,0.2442685,0.0009461012,0.0037220682,0.000059698858],"about_ca_topic_score_codex":0.0004910736,"about_ca_topic_score_gemma":0.00046139577,"teacher_disagreement_score":0.00078132213,"about_ca_system_score_codex":0.0002349496,"about_ca_system_score_gemma":0.00019229166,"threshold_uncertainty_score":0.0020061135},"labels":[],"label_agreement":null},{"id":"W4415087165","doi":"10.1016/j.mcpro.2025.101091","title":"Interaction Proteomics of Polycystins 1 and 2 Reveal a Novel Role for the BLOC-1/BORC Lysosomal Positioning Complex","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Genetic and Kidney Cyst Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto Metropolitan University","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Toronto Metropolitan University","keywords":"Endoplasmic reticulum; Cilium; Autosomal dominant polycystic kidney disease; PKD1; Polycystic kidney disease; Mutant; Biogenesis; Biotinylation; Proteomics; Organelle","score_opus":0.00841646836665194,"score_gpt":0.243890234363948,"score_spread":0.23547376599729605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415087165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98991966,0.0035305503,0.0037676787,0.00023866081,0.000035130834,0.00002060007,0.00096170494,0.0001123173,0.0014136512],"genre_scores_gemma":[0.98214495,0.0015066118,0.0072380947,0.00027216782,0.000018162567,0.00003615411,0.0032962123,0.0000692816,0.0054183532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998678,0.000007172669,0.000007683404,0.0000515226,0.000035394994,0.000030418429],"domain_scores_gemma":[0.9999267,0.000006676868,0.000018254752,0.0000065834415,0.000012482839,0.000029307872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000102604376,0.00039574283,0.00023964161,0.00032777173,0.0003411145,0.00054194365,0.000238511,0.0005168149,0.0010352614],"category_scores_gemma":[0.000112518705,0.00020379428,0.00034344074,0.00021321562,0.00015773844,0.00031728065,0.00040305327,0.00048403288,0.0005716071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053060743,0.000006197749,0.000547142,0.000028042361,0.000009935336,0.00006142962,0.000014687787,0.000024243309,0.9985459,0.000062025,0.00007237557,0.0005749725],"study_design_scores_gemma":[0.000023861618,0.00010803935,0.101181984,0.00002034426,0.00006470444,0.002253677,0.00010702901,0.0043011317,0.8807445,0.00018661136,0.010985283,0.000022914668],"about_ca_topic_score_codex":0.0015358126,"about_ca_topic_score_gemma":0.0036535559,"teacher_disagreement_score":0.0015358126,"about_ca_system_score_codex":0.0006563916,"about_ca_system_score_gemma":0.00028195826,"threshold_uncertainty_score":0.0047625303},"labels":[],"label_agreement":null},{"id":"W4415225267","doi":"10.1016/j.mcpro.2025.101088","title":"Sequencing of Polyclonal Antibodies by Integrating Intact Mass, Middle–Down, and De Novo Bottom–Up Mass Spectrometry","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Blackberry (Canada); Bioinformatics Solutions (Canada)","funders":"National Key Research and Development Program of China","keywords":"Polyclonal antibodies; Monoclonal antibody; Antibody; Germline; Recombinant DNA; DNA sequencing; HEK 293 cells; Cell culture; Mass spectrometry","score_opus":0.013138256405643782,"score_gpt":0.2699143827818882,"score_spread":0.2567761263762444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415225267","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19792515,0.0036811137,0.7746346,0.0004906504,0.000386114,0.0009970787,0.0062406403,0.0065265233,0.009118068],"genre_scores_gemma":[0.20181642,0.0026629316,0.7711625,0.0010333996,0.00014321633,0.000723609,0.012632819,0.0020764542,0.007748605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978415,0.00026501366,0.00022937078,0.00066868606,0.00081766857,0.00017778591],"domain_scores_gemma":[0.9980844,0.0004334763,0.00024506374,0.000279354,0.0008103459,0.00014727985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024357848,0.0013771101,0.0009178188,0.0018252947,0.0006662155,0.0015160209,0.0008994606,0.00072919123,0.0022143521],"category_scores_gemma":[0.003985644,0.0006923843,0.00084888603,0.0008748927,0.0005935367,0.0007916108,0.0010806662,0.0016921432,0.0024922015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015044365,0.000058377107,0.00094785495,0.00024488938,0.00007773351,0.00012399835,0.0001685924,0.00060633704,0.9685476,0.00090784614,0.0011672154,0.026999094],"study_design_scores_gemma":[0.000029025403,0.00021073288,0.0039604977,0.000068635185,0.0000949785,0.00034219844,0.00006939577,0.012050711,0.9521968,0.0012021114,0.029711803,0.000063044485],"about_ca_topic_score_codex":0.0017764245,"about_ca_topic_score_gemma":0.003469658,"teacher_disagreement_score":0.0024357848,"about_ca_system_score_codex":0.00067928334,"about_ca_system_score_gemma":0.0013600949,"threshold_uncertainty_score":0.012881815},"labels":[],"label_agreement":null},{"id":"W4415687435","doi":"10.1016/j.mcpro.2025.101438","title":"Integrated Glycosylation Analysis of Immunoglobulin Isotypes Reveals Expanded Humoral Remodeling in Elderly Tuberculosis Infection","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Ministry of Science and Technology, Taiwan; National Science and Technology Council","keywords":"Fucosylation; Glycosylation; Isotype; Antibody; Immune system; Glycan; Immunoglobulin G","score_opus":0.0141266743697884,"score_gpt":0.2977933662138574,"score_spread":0.283666691844069,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415687435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99915636,0.00020793879,0.00038242733,0.00000888725,0.0000014833033,0.0000028793577,0.00010566385,0.000007781461,0.00012664241],"genre_scores_gemma":[0.99888283,0.00016775087,0.00059057714,0.000023987017,0.000003187444,0.000004111447,0.00017398906,0.0000034059942,0.00015018116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992573,0.000013647583,0.000007228475,0.000018661722,0.000015822025,0.000018845898],"domain_scores_gemma":[0.9999281,0.0000075652592,0.000032627373,0.000006144989,0.00001063066,0.000014866174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015285752,0.00022661104,0.00014541333,0.00038555733,0.00014287925,0.00018972646,0.00008567226,0.00024233933,0.0004041475],"category_scores_gemma":[0.00014886928,0.00010587861,0.00015880071,0.00022849972,0.00013927146,0.00010088356,0.00020856148,0.0001848785,0.00007542875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044330183,0.000020451136,0.062646374,0.00003677622,0.000036336118,0.00019867656,0.00009519868,0.000066645734,0.93193895,0.000027243319,0.000043962973,0.0044461032],"study_design_scores_gemma":[0.000011185889,0.00045385296,0.85329914,0.000011400747,0.00008136577,0.0019748525,0.0002060456,0.0012400701,0.14201097,0.00010216821,0.00059904426,0.0000098275905],"about_ca_topic_score_codex":0.0008361011,"about_ca_topic_score_gemma":0.0009704511,"teacher_disagreement_score":0.0008361011,"about_ca_system_score_codex":0.0001000806,"about_ca_system_score_gemma":0.00006213499,"threshold_uncertainty_score":0.0016624331},"labels":[],"label_agreement":null},{"id":"W4417177416","doi":"10.1016/j.mcpro.2025.101480","title":"Enhanced Identifications and Quantification Through Retention Time Down-Sampling in Fast-Cycling Diagonal-PASEF Methods","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bruker (Canada)","funders":"","keywords":"Analyte; Mass spectrometry; Workflow; Retention time; Quantitative proteomics; Peptide; Diagonal; Quadrupole","score_opus":0.021897963487771167,"score_gpt":0.3368192160174262,"score_spread":0.314921252529655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417177416","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19547369,0.0021787335,0.79397327,0.00031282162,0.00014636431,0.00019593984,0.000735147,0.0047509875,0.002233091],"genre_scores_gemma":[0.2491388,0.0011140036,0.7441605,0.00036782425,0.000045188666,0.00045287464,0.0011384268,0.0009978114,0.0025845654],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987159,0.00021287675,0.00008371188,0.00037181054,0.00049823755,0.000117534466],"domain_scores_gemma":[0.99858737,0.00059321994,0.00017898141,0.00017936298,0.00039581992,0.000065271335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025286793,0.001282237,0.00062094827,0.0010171003,0.0004937212,0.0010346348,0.0012588786,0.0009180261,0.0021719506],"category_scores_gemma":[0.0037402161,0.00052412454,0.00056328863,0.0006448114,0.00088105066,0.0016594739,0.001488393,0.0014166659,0.0011613988],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036612217,0.000085122265,0.0014471847,0.0004601688,0.00006553338,0.00016129475,0.00027498303,0.0035593782,0.91899323,0.0029716142,0.0011664047,0.07044894],"study_design_scores_gemma":[0.000019567533,0.0001588309,0.0018655123,0.00003574805,0.00003228335,0.00033484184,0.000077617195,0.053581886,0.9339629,0.0016501654,0.008200736,0.00007983503],"about_ca_topic_score_codex":0.0007283273,"about_ca_topic_score_gemma":0.0016423264,"teacher_disagreement_score":0.0025286793,"about_ca_system_score_codex":0.00054939545,"about_ca_system_score_gemma":0.000813622,"threshold_uncertainty_score":0.0133731365},"labels":[],"label_agreement":null},{"id":"W4417259059","doi":"10.1016/j.mcpro.2025.101479","title":"Exploring How Workflow Variations in Denaturation-Based Assays Impact Global Protein–Protein Interaction Predictions","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Paul G. Allen Frontiers Group; National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; CHDI Foundation; Paul G. Allen Family Foundation; Simons Foundation; National Institutes of Health; National Science Foundation; Stand Up To Cancer; Convergence","keywords":"Workflow; Denaturation (fissile materials); Sample (material); Quantitative proteomics; Quality (philosophy); Value (mathematics)","score_opus":0.014752915728434467,"score_gpt":0.24077520999591573,"score_spread":0.22602229426748127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417259059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9454913,0.0008792769,0.04370904,0.00027574375,0.00008627328,0.0001273204,0.005241402,0.002945446,0.0012442708],"genre_scores_gemma":[0.93398994,0.00053326465,0.046625752,0.00022688172,0.00002403981,0.00022635763,0.017385516,0.000601812,0.00038645277],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9953506,0.0012850148,0.00044543613,0.0016298989,0.0009722277,0.00031677904],"domain_scores_gemma":[0.992747,0.0040510464,0.0006226861,0.0016293302,0.00071985705,0.00023004436],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0077179093,0.0012399672,0.0008315017,0.00086446403,0.0005777139,0.0018779078,0.0008908165,0.00065914774,0.0005989681],"category_scores_gemma":[0.014302894,0.0004458876,0.0010655721,0.0011557196,0.00058091193,0.0014974168,0.0009850777,0.0012181572,0.00047630403],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003743531,0.000791464,0.21963622,0.0015081589,0.0019732942,0.00039874142,0.00050900783,0.16091913,0.5136899,0.0022391123,0.0041008056,0.09049071],"study_design_scores_gemma":[0.00013820687,0.0010718066,0.16608486,0.00009430132,0.00057816657,0.00033771276,0.00034398524,0.49817824,0.31987783,0.0051490823,0.007928319,0.0002176376],"about_ca_topic_score_codex":0.003390083,"about_ca_topic_score_gemma":0.0040775957,"teacher_disagreement_score":0.0077179093,"about_ca_system_score_codex":0.0008415832,"about_ca_system_score_gemma":0.0010655868,"threshold_uncertainty_score":0.040816665},"labels":[],"label_agreement":null},{"id":"W4417516068","doi":"10.1016/j.mcpro.2025.101496","title":"Comparative Evaluation of Solid-phase and Membrane Mimetic Strategies in Membrane Proteome Coverage and Disease-State Analysis","year":2025,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; University of Regina; University of British Columbia","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Canada Foundation for Innovation; University of British Columbia; Heart and Stroke Foundation of Canada","keywords":"Proteome; Membrane protein; Transmembrane protein; Membrane; Integral membrane protein; Context (archaeology)","score_opus":0.01566034394873992,"score_gpt":0.3376926914578806,"score_spread":0.32203234750914067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417516068","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94060713,0.006963975,0.048728388,0.00022627773,0.0000956154,0.00022513217,0.0011929816,0.00042602269,0.0015345266],"genre_scores_gemma":[0.8476398,0.009283719,0.13745,0.0002763063,0.000051683794,0.0005605568,0.002856094,0.00027714422,0.0016048715],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890506,0.00026133633,0.00010110295,0.00024636398,0.00038484394,0.00010123697],"domain_scores_gemma":[0.99917597,0.0002877792,0.00014612982,0.00007582186,0.00023172452,0.000082580285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020429583,0.00079133955,0.0005090015,0.0008667405,0.00029310974,0.0009043864,0.0004124901,0.00056408945,0.0004435312],"category_scores_gemma":[0.0018686481,0.00024047383,0.0004136409,0.00053991994,0.00037645103,0.00061785337,0.000715796,0.0005791967,0.00028067784],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023224854,0.000056022946,0.0008831648,0.00027070486,0.0000593582,0.000038691924,0.000051538256,0.00046388505,0.9918263,0.00011187542,0.00007522839,0.005930965],"study_design_scores_gemma":[0.00001163717,0.00043717725,0.005621565,0.00003173052,0.0000985211,0.00020993476,0.000071026276,0.0046559833,0.9866894,0.00012457026,0.0020259588,0.000022467158],"about_ca_topic_score_codex":0.00036885132,"about_ca_topic_score_gemma":0.0006461507,"teacher_disagreement_score":0.0020429583,"about_ca_system_score_codex":0.00035948638,"about_ca_system_score_gemma":0.00040481283,"threshold_uncertainty_score":0.010804355},"labels":[],"label_agreement":null},{"id":"W46515726","doi":"10.1074/mcp.m111.012245","title":"Expression of PTRF in PC-3 Cells Modulates Cholesterol Dynamics and the Actin Cytoskeleton Impacting Secretion Pathways","year":2011,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Caveolin-1 and cellular processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Caveolae; Cell biology; Biology; Cytoskeleton; Secretion; Proteome; Stable isotope labeling by amino acids in cell culture; Golgi apparatus; Membrane protein; Chemistry; Proteomics; Cell; Biochemistry; Signal transduction; Endoplasmic reticulum","score_opus":0.008386663752831707,"score_gpt":0.19473537466020888,"score_spread":0.18634871090737717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W46515726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99478626,0.0009882677,0.0020991426,0.00014949823,0.000029571347,0.000024658706,0.000889874,0.00007319775,0.0009595556],"genre_scores_gemma":[0.9935452,0.00091504253,0.0022575886,0.000076096556,0.000010489659,0.0000481535,0.0011265427,0.000029724086,0.0019910566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99981505,0.000020279722,0.000019185443,0.000035975318,0.000051204282,0.000058306836],"domain_scores_gemma":[0.99991715,0.000013901649,0.000021449254,0.000017513234,0.000013591472,0.000016421813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011033213,0.00030067368,0.0003290815,0.00015718666,0.00022506372,0.0003772272,0.0002179636,0.00029651605,0.00064948865],"category_scores_gemma":[0.00011304245,0.00013889892,0.00035921676,0.00024519456,0.00023110617,0.00019050612,0.00017099992,0.0007769091,0.00022984788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008208125,0.000014910106,0.00007721902,0.000012797455,0.000002826915,0.000022834523,0.000007658476,0.000031722888,0.999342,0.000032490447,0.00001911467,0.0003543108],"study_design_scores_gemma":[0.000013232513,0.00011592473,0.0038449382,0.0000030269005,0.0000126425175,0.0001092897,0.00001575349,0.0006673127,0.99411255,0.00002339524,0.0010779452,0.0000038248945],"about_ca_topic_score_codex":0.0033236882,"about_ca_topic_score_gemma":0.0032986905,"teacher_disagreement_score":0.0033236882,"about_ca_system_score_codex":0.00043323814,"about_ca_system_score_gemma":0.00030608225,"threshold_uncertainty_score":0.006608665},"labels":[],"label_agreement":null}]}