{"meta":{"query_hash":"0dabd3b16e87","filters":{"venue":"Molecular BioSystems"},"cohort_total":123,"direct_labels_cover":0,"predictions_cover":123,"exported":123,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/0dabd3b16e87","api":"https://metacan.xera.ac/api/v1/cohort?venue=Molecular+BioSystems"},"results":[{"id":"W1848460039","doi":"10.1039/c5mb00259a","title":"Progress and challenges in predicting protein methylation sites","year":2015,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Methylation; DNA methylation; Computational biology; Data science; Biology; Protein expression; Computer science; Genetics; DNA","score_opus":0.06340135662885354,"score_gpt":0.3184550147876029,"score_spread":0.25505365815874936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1848460039","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004013989,0.99345106,0.00003089643,0.000051598625,0.00014049007,0.002083445,0.000026061476,0.00002986437,0.00017258723],"genre_scores_gemma":[0.008317609,0.9900443,0.00015472223,0.0000023567932,0.00030967852,0.00045727586,0.00055331667,0.00009472046,0.00006601184],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99763656,0.00046091966,0.0005818288,0.0007626489,0.0002671361,0.0002909194],"domain_scores_gemma":[0.99888754,0.000008257692,0.0004002354,0.0004949484,0.00010531,0.000103734616],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00071669003,0.000416388,0.0008217823,0.00022087524,0.00003433776,0.00004867654,0.00017605904,0.0007952855,0.0000012042035],"category_scores_gemma":[0.00007736041,0.0003912914,0.00016270761,0.00023122896,0.000058671758,0.000005357386,0.0001552384,0.00019232085,0.0000055476926],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014604528,0.000037180555,0.000034264845,0.015335987,0.00020577863,0.000015992744,0.000058558275,0.000011629939,0.009403803,0.000055224642,0.000038643833,0.9747883],"study_design_scores_gemma":[0.00037760433,0.00021104906,0.0000069683197,0.007024203,0.00017928059,0.0000894094,0.000037422426,0.0000971907,0.0028504399,0.000019348166,0.9885717,0.0005353855],"about_ca_topic_score_codex":0.000013026243,"about_ca_topic_score_gemma":0.000057731624,"teacher_disagreement_score":0.9885331,"about_ca_system_score_codex":0.00010234954,"about_ca_system_score_gemma":0.00020421624,"threshold_uncertainty_score":0.9998539},"labels":[],"label_agreement":null},{"id":"W1895666910","doi":"10.1039/c5mb00406c","title":"Pleiotropic drug-resistance attenuated genomic library improves elucidation of drug mechanisms","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Victoria University of Wellington; Victoria University; University of Victoria","keywords":"Saccharomyces cerevisiae; Drug; Drug resistance; Biology; Genome; Drug discovery; Computational biology; Mutant; Gene; Genetics; Drug action; Mechanism (biology); Bioinformatics; Pharmacology","score_opus":0.008288617733696395,"score_gpt":0.22341733304761313,"score_spread":0.21512871531391672,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1895666910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991004,0.0036926146,0.0023521527,0.0003604869,0.00027205006,0.0004260396,0.000057074147,0.000029083138,0.0018064964],"genre_scores_gemma":[0.99208134,0.00005903641,0.0015485728,0.0000965985,0.00012209389,0.00003313926,0.00031197825,0.00005556643,0.0056916582],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983145,0.00019702851,0.00035938076,0.00044643736,0.00035858175,0.0003240987],"domain_scores_gemma":[0.9989034,0.0000070235155,0.00015379992,0.00056995644,0.00016818213,0.00019763829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023867095,0.00020874578,0.00023123636,0.000097100194,0.000044899254,0.00004661814,0.0004132107,0.00012999083,0.000011790082],"category_scores_gemma":[0.00004715149,0.00019742773,0.00011642119,0.00020887097,0.00006856545,0.000008074914,0.00024876892,0.00009471962,0.000040432293],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109165165,0.000046159603,0.00025320586,0.000101352,0.00006332859,0.000009511485,0.0000639769,0.00003773466,0.99352086,0.0003659359,0.005280991,0.00014777647],"study_design_scores_gemma":[0.0006490593,0.000108812776,0.0002141916,0.00003721061,0.000014980582,0.0000057124244,0.00012864803,0.00015274041,0.9849601,0.00025135942,0.013255759,0.00022147213],"about_ca_topic_score_codex":0.000040937026,"about_ca_topic_score_gemma":0.000029497445,"teacher_disagreement_score":0.008560809,"about_ca_system_score_codex":0.000020921394,"about_ca_system_score_gemma":0.00020022447,"threshold_uncertainty_score":0.8050869},"labels":[],"label_agreement":null},{"id":"W1919610996","doi":"10.1039/c5mb00492f","title":"Discovery of urinary metabolomic biomarkers for early detection of acute kidney injury","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Acute Kidney Injury Research","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Population and Public Health; University of Ottawa","funders":"National Research Foundation of Korea; Royal Society of Chemistry; Royal Society","keywords":"Lipocalin; Acute kidney injury; Urinary system; Creatinine; Kidney; Internal medicine; Blood urea nitrogen; Endocrinology; Nephrotoxicity; Medicine; Cystatin C; Kidney disease; Osteopontin; Urine; Pharmacology; Urology","score_opus":0.0212618707006427,"score_gpt":0.31236271193045373,"score_spread":0.29110084122981106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1919610996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885063,0.00033715225,0.0069531286,0.00035817962,0.00043673257,0.0014187357,0.0014688586,0.000038315582,0.0004825555],"genre_scores_gemma":[0.9983511,0.000014810259,0.000757212,0.00008954877,0.00007455913,0.0001163339,0.00013975921,0.000050422,0.0004062337],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981619,0.00013865615,0.0005280643,0.0003126122,0.0005552194,0.00030354556],"domain_scores_gemma":[0.9984055,0.000024904712,0.00024302368,0.00057905255,0.0004010638,0.0003464599],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006687127,0.00018928046,0.0005648816,0.00036964926,0.00002542566,0.000015791955,0.00019192095,0.00017896674,0.000004100805],"category_scores_gemma":[0.0003771366,0.00016249999,0.00028830158,0.00044194038,0.00013691834,0.00014352058,0.000094513765,0.000117963835,0.000010019358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030357372,0.00016149426,0.001698777,0.00046637034,0.001215793,0.000033451197,0.00008923419,5.825282e-8,0.98780936,0.000052880765,0.00516306,0.00027380543],"study_design_scores_gemma":[0.0023760211,0.0030196598,0.0009186232,0.000159835,0.0005042388,0.00009306067,0.00008634609,0.00019316854,0.9896949,0.000036670725,0.0027739727,0.00014350207],"about_ca_topic_score_codex":0.00016796224,"about_ca_topic_score_gemma":3.171401e-7,"teacher_disagreement_score":0.009844779,"about_ca_system_score_codex":0.000102878665,"about_ca_system_score_gemma":0.0004511291,"threshold_uncertainty_score":0.6626557},"labels":[],"label_agreement":null},{"id":"W1960117778","doi":"10.1039/c5mb00278h","title":"RNAi therapeutics for brain cancer: current advancements in RNAi delivery strategies","year":2015,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Irish Research Council; Fonds de Recherche du Québec - Santé; Irish Cancer Society","keywords":"RNA interference; Gene silencing; Angiogenesis; Blood–brain barrier; Biology; Metastasis; Cancer; Cancer research; Central nervous system; Brain tumor; Medicine; Neuroscience; Gene; Pathology; RNA; Genetics","score_opus":0.08055800070982055,"score_gpt":0.413548992828223,"score_spread":0.33299099211840244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1960117778","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017401641,0.99294466,0.001238578,0.000030326251,0.001562776,0.0017945524,0.0005597513,0.000018519706,0.000110650544],"genre_scores_gemma":[0.0019128803,0.99460536,0.00007262371,0.00015248632,0.00044644726,0.00097410806,0.0014232221,0.000116972114,0.0002959141],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970878,0.00028002085,0.00086170505,0.0008878906,0.00029679027,0.0005857961],"domain_scores_gemma":[0.998416,0.00002144815,0.00044855417,0.0007182197,0.00026706158,0.00012873008],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042836316,0.0006866716,0.0012305384,0.00020730462,0.000053725475,0.00011812832,0.00069337524,0.00054019195,0.0000066741172],"category_scores_gemma":[0.000023089688,0.0006106179,0.0005744541,0.0002266644,0.000059568683,0.000011030723,0.00018192371,0.00026203564,0.00002156841],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007335661,0.00016767961,0.000019386092,0.010940319,0.0006702573,0.000025347057,0.000058511814,0.000051894956,0.010245129,0.000079949445,0.005965898,0.9717023],"study_design_scores_gemma":[0.0005445894,0.00027558353,6.480584e-7,0.004272481,0.00025664442,0.000011012488,0.00009828058,0.000023713752,0.001368444,0.000036351208,0.9924386,0.0006736372],"about_ca_topic_score_codex":0.00006712099,"about_ca_topic_score_gemma":0.00013195176,"teacher_disagreement_score":0.9864727,"about_ca_system_score_codex":0.00017434524,"about_ca_system_score_gemma":0.0010532605,"threshold_uncertainty_score":0.9996345},"labels":[],"label_agreement":null},{"id":"W1963944210","doi":"10.1039/c2mb05469h","title":"An upstream interacting context based framework for the computational inference of microRNA functions","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute","funders":"","keywords":"microRNA; Inference; In silico; Computational biology; Context (archaeology); Function (biology); Computer science; Biology; Bioinformatics; Artificial intelligence; Genetics; Gene","score_opus":0.016005965107537476,"score_gpt":0.29914163098613056,"score_spread":0.28313566587859307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963944210","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49658465,0.00075947365,0.50192857,0.00007456687,0.00024797008,0.0003042284,0.000071376264,0.000008602678,0.00002055837],"genre_scores_gemma":[0.99394596,0.0000014521258,0.0052435743,0.00015733195,0.00020565643,0.00006536306,0.00034653515,0.000024198393,0.000009930821],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991489,0.000101585385,0.0002498319,0.00018871059,0.00011862015,0.00019236199],"domain_scores_gemma":[0.99901277,0.0001416379,0.00019833291,0.00037938455,0.00019041209,0.000077468314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024589244,0.00012890132,0.00011666983,0.000037572052,0.00009988973,0.000027168096,0.0001761887,0.000118810174,0.000017163862],"category_scores_gemma":[0.00022780341,0.00010597817,0.00012946357,0.000083043014,0.00005810067,0.000007836168,0.000029575729,0.000059868333,0.000005154205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071297,0.00012483477,0.005539265,0.00005602198,0.000100080164,1.8321018e-7,0.00006786688,0.004178383,0.9871384,0.0012124593,0.00020728214,0.0013039638],"study_design_scores_gemma":[0.0006707507,0.00024513635,0.0049065794,0.0001465353,0.00011295838,0.000012043047,0.00059935974,0.014283059,0.9688814,0.00016794058,0.009665962,0.00030825732],"about_ca_topic_score_codex":0.000020956013,"about_ca_topic_score_gemma":0.000006137498,"teacher_disagreement_score":0.4973613,"about_ca_system_score_codex":0.000017930317,"about_ca_system_score_gemma":0.000067485125,"threshold_uncertainty_score":0.43216646},"labels":[],"label_agreement":null},{"id":"W1967096978","doi":"10.1039/c3mb70387h","title":"Conditional protein splicing of α-sarcin in live cells","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Toxin Mechanisms and Immunotoxins","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"RNA splicing; Protein splicing; Context (archaeology); Biology; Alternative splicing; SR protein; Exonic splicing enhancer; Cell biology; Computational biology; RNA; Messenger RNA; Biochemistry; Gene","score_opus":0.004565758219521848,"score_gpt":0.19414427431864126,"score_spread":0.1895785160991194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967096978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99474066,0.0004428129,0.003282957,0.000057109602,0.0002927045,0.00044705704,0.000031030053,0.000023795576,0.0006818614],"genre_scores_gemma":[0.9990809,0.0000025003296,0.00020255081,0.000064864646,0.000012998478,0.000037236805,0.000053142117,0.000016232474,0.0005296077],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988822,0.00026677948,0.00034286728,0.00022342746,0.000045537414,0.00023921588],"domain_scores_gemma":[0.99952,0.00003067339,0.00013705577,0.0002578256,0.000041030045,0.000013400778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034675316,0.00013295368,0.00027753357,0.00012751951,0.00003980523,0.0000069610546,0.00016915063,0.00019107739,0.00021372749],"category_scores_gemma":[0.00003048882,0.00012494161,0.000083077444,0.00010544156,0.00006323204,0.000029600595,0.000049995982,0.00015787971,0.0003416431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020413607,0.00006547701,0.00008736605,0.000050746694,0.000032284952,0.000004874923,0.00014674077,0.000020327037,0.9890385,0.010330151,0.0000632859,0.00013978858],"study_design_scores_gemma":[0.00083451066,0.00018939153,0.00028385033,0.00014868577,0.0000072433977,0.000012269733,0.00013270353,0.000042831223,0.99522364,0.00038650978,0.0026036229,0.00013473436],"about_ca_topic_score_codex":0.0003114977,"about_ca_topic_score_gemma":0.000022710206,"teacher_disagreement_score":0.009943641,"about_ca_system_score_codex":0.000024784253,"about_ca_system_score_gemma":0.000024528194,"threshold_uncertainty_score":0.5094971},"labels":[],"label_agreement":null},{"id":"W1967721813","doi":"10.1039/c4mb00290c","title":"Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Proteome; Computational biology; Human proteome project; Disease; Biology; Genetics; Bioinformatics; Medicine; Proteomics; Gene; Internal medicine","score_opus":0.014118793702757187,"score_gpt":0.28135243497865536,"score_spread":0.26723364127589816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967721813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966028,0.0004137397,0.0018774132,0.000057867812,0.000046184025,0.0006365426,0.00008755917,0.000014010129,0.00026390725],"genre_scores_gemma":[0.9988979,0.000013746972,0.000115627205,0.000084298874,0.00004297034,0.00025754407,0.00051226193,0.000027422635,0.000048220798],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983305,0.00026283725,0.00047647624,0.0004424158,0.00020213358,0.00028565736],"domain_scores_gemma":[0.99922013,0.000014693334,0.00008537313,0.0004631193,0.00008845337,0.00012823849],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023883145,0.00019263214,0.0003589895,0.00045794284,0.000038782884,0.000015206408,0.00022451935,0.00014740894,0.000015318219],"category_scores_gemma":[0.00017610454,0.00020098953,0.0001801954,0.0009760405,0.000057589106,0.0000040027103,0.00006133015,0.00010801944,0.000002006359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037701928,0.00009781654,0.08552509,0.00008793793,0.00017800096,0.000013385648,0.00009005256,0.005249016,0.90852726,0.000064719774,0.000010006562,0.00011900715],"study_design_scores_gemma":[0.00061035936,0.00018556154,0.0749492,0.00013040827,0.00019090097,7.3349935e-7,0.000066385124,0.013863033,0.9093046,0.000023943774,0.00035311768,0.00032175728],"about_ca_topic_score_codex":0.00072963507,"about_ca_topic_score_gemma":0.0018032044,"teacher_disagreement_score":0.01057589,"about_ca_system_score_codex":0.000041436546,"about_ca_system_score_gemma":0.00008681152,"threshold_uncertainty_score":0.8196115},"labels":[],"label_agreement":null},{"id":"W1970597486","doi":"10.1039/c0mb00298d","title":"The synthetic genetic interaction network reveals small molecules that target specific pathways in <i>Sacchromyces cerevisiae</i>","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Division of Biological Infrastructure; National Center for Research Resources; National Institute of General Medical Sciences; National Human Genome Research Institute; Canadian Institutes of Health Research; University of Illinois at Chicago; Alfred P. Sloan Foundation; National Cancer Institute; National Institutes of Health; National Science Foundation","keywords":"Saccharomyces cerevisiae; Biology; Synthetic lethality; Gene; Computational biology; Drug discovery; Genetics; DNA damage; Chemical library; DNA repair; Genetic screen; Mutant; DNA; Biochemistry; Small molecule","score_opus":0.020638955142664693,"score_gpt":0.1999720230209866,"score_spread":0.1793330678783219,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970597486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.907238,0.033488646,0.04195849,0.0001556156,0.0019833639,0.0015894353,0.000033818043,0.00006552452,0.013487098],"genre_scores_gemma":[0.9938922,0.001229414,0.004004014,0.0002524366,0.00031443214,0.00008842731,0.000055193224,0.00006383389,0.00010008396],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976534,0.00027557142,0.00067509816,0.0005162468,0.00020184468,0.0006778318],"domain_scores_gemma":[0.9985145,0.000030450376,0.0003285014,0.00092328683,0.00006927398,0.00013399869],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00065272476,0.0003727306,0.00032264195,0.00006016751,0.00019961051,0.00013509681,0.0006150296,0.0002818948,0.0000216949],"category_scores_gemma":[0.000023877341,0.00029347045,0.00021783811,0.00019967444,0.000112911046,0.000007801282,0.00022134016,0.00023130327,0.000051446128],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074757554,0.0004219205,0.015316368,0.0005128151,0.0006738226,0.00038604258,0.0016075501,0.005380121,0.9177147,0.008219018,0.016788619,0.032231454],"study_design_scores_gemma":[0.0038422267,0.0018630042,0.0113219,0.0017112842,0.00020881555,0.0011361492,0.0034054199,0.010478197,0.45603266,0.012726058,0.4927412,0.004533071],"about_ca_topic_score_codex":0.00004597916,"about_ca_topic_score_gemma":0.000086163695,"teacher_disagreement_score":0.47595257,"about_ca_system_score_codex":0.000041758896,"about_ca_system_score_gemma":0.00004680127,"threshold_uncertainty_score":0.9999517},"labels":[],"label_agreement":null},{"id":"W1972621583","doi":"10.1039/c2mb05354c","title":"Forced homodimerization of the c-Fos leucine zipper in designed bHLHZ-like hybrid proteins MaxbHLH-Fos and ArntbHLH-Fos","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Leucine zipper; bZIP domain; Zipper; Basic helix-loop-helix; Transcription factor; Basic helix-loop-helix leucine zipper transcription factors; Chemistry; DNA; Coiled coil; DNA-binding protein; Cell biology; Biochemistry; Biophysics; Biology; Gene","score_opus":0.007472463826022768,"score_gpt":0.20790814406864072,"score_spread":0.20043568024261796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972621583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97601104,0.0034524803,0.017993826,0.00014080353,0.00030299783,0.0017021787,0.000027796288,0.000017468927,0.0003513916],"genre_scores_gemma":[0.9981654,0.000064858505,0.00087797653,0.00016537239,0.00011904265,0.00021320915,0.00003822103,0.000056891546,0.00029899296],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979676,0.00041659252,0.00045846266,0.000413147,0.00029420306,0.00045001417],"domain_scores_gemma":[0.9988182,0.000014659583,0.00025039515,0.00071511336,0.0000804978,0.00012110833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061129115,0.0002962124,0.00033321048,0.00009438185,0.00009410628,0.000029506718,0.00030890456,0.0002222158,0.000014616087],"category_scores_gemma":[0.00012371442,0.00023253937,0.00014270432,0.00020886977,0.00008814056,0.000014361927,0.00016798309,0.00009009587,0.000005338061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007362666,0.00007124473,0.0018452962,0.0001159412,0.000052524003,0.0000043576506,0.00008956998,0.00002594449,0.99644756,0.0002675718,0.000080625294,0.00092571584],"study_design_scores_gemma":[0.0007139539,0.00019128148,0.0006620714,0.00013069814,0.00003573913,0.00006238848,0.00007925489,0.00006975911,0.9949237,0.00004308495,0.002795859,0.0002921753],"about_ca_topic_score_codex":0.000086355445,"about_ca_topic_score_gemma":0.000020402807,"teacher_disagreement_score":0.02215438,"about_ca_system_score_codex":0.000024432433,"about_ca_system_score_gemma":0.00006319494,"threshold_uncertainty_score":0.948268},"labels":[],"label_agreement":null},{"id":"W1975456224","doi":"10.1039/b501686j","title":"Electrophoretic and mass spectrometric strategies for profiling bacterial lipopolysaccharides","year":2005,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Chemistry; Haemophilus influenzae; Chromatography; Capillary electrophoresis; Mass spectrometry; Tandem mass spectrometry; Lipopolysaccharide; Heptose; Strain (injury); Bacteria; Hexose; Biochemistry; Mutant; Biology; Enzyme","score_opus":0.009176023808118253,"score_gpt":0.26207776097418195,"score_spread":0.2529017371660637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975456224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97423846,0.0029388156,0.021193968,0.00021675519,0.00010458838,0.00081989565,0.000026179832,0.000025710191,0.00043562948],"genre_scores_gemma":[0.9927198,0.00011837228,0.006128486,0.00006233251,0.00046249415,0.00012646535,0.00010711146,0.00003668473,0.00023820005],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986841,0.000066599,0.00024144411,0.000422744,0.00019498121,0.00039014634],"domain_scores_gemma":[0.99940985,0.000011256231,0.00006950821,0.0002774466,0.00011945272,0.00011246856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026658308,0.00018357237,0.00017541256,0.00017198251,0.000100738274,0.00017452856,0.00015932055,0.00015587243,0.00002331052],"category_scores_gemma":[0.00009665916,0.00017408571,0.0000898799,0.00020842842,0.000055642235,0.000008600836,0.00004950909,0.00008158912,0.000010313045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000111073496,0.000020809324,0.00007621218,0.00006137863,0.00004430222,0.0000028582747,0.000012679255,0.000018567247,0.9967051,0.0015554215,0.00012395231,0.0012676463],"study_design_scores_gemma":[0.0006995516,0.000496262,0.000025600788,0.0000122554575,0.000012741568,0.000027368016,0.00009008114,0.00093485956,0.9799464,0.00019667287,0.017342914,0.00021531963],"about_ca_topic_score_codex":0.00001382228,"about_ca_topic_score_gemma":0.000013263231,"teacher_disagreement_score":0.018481396,"about_ca_system_score_codex":0.000027528733,"about_ca_system_score_gemma":0.00011806798,"threshold_uncertainty_score":0.709901},"labels":[],"label_agreement":null},{"id":"W1976200636","doi":"10.1039/b717542f","title":"Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT)","year":2008,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Ontario Institute for Cancer Research; University of Toronto","funders":"","keywords":"Biology; Ovarian cancer; KEGG; Proteome; Western blot; Cell biology; Cell; Phenotype; Cancer cell; Metastasis; Cell adhesion; Extracellular matrix; Cell culture; Cancer research; Cancer; Gene expression; Gene; Transcriptome; Genetics","score_opus":0.013484925311642646,"score_gpt":0.2447419079938707,"score_spread":0.23125698268222805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976200636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9610347,0.00017841574,0.037236948,0.00004216754,0.00002227643,0.0009036787,0.0004055726,0.00015688715,0.000019357372],"genre_scores_gemma":[0.9941725,0.000017200404,0.0042045913,0.000007039457,0.00001269074,0.001209721,0.00018580805,0.000048179067,0.00014224277],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99845594,0.000029570192,0.00057582813,0.00043574086,0.00028994778,0.00021299078],"domain_scores_gemma":[0.9982564,0.000014276476,0.000795264,0.00052703934,0.0003545026,0.000052537034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117124444,0.00019430499,0.00024216558,0.00011069329,0.00018791364,0.0000138609485,0.00022577698,0.00027017723,0.000019722964],"category_scores_gemma":[0.00003980056,0.00019709283,0.000061591345,0.00040864098,0.0001476574,0.000074431555,0.00005065766,0.0001664596,0.000003855628],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009062301,0.00017251345,0.0006631508,0.000053905365,0.000039289273,0.000014656935,0.00004574336,0.000077895085,0.99839175,0.0004458918,0.000016800028,0.00006934861],"study_design_scores_gemma":[0.0003385881,0.000017079612,0.000060015762,0.0001872276,0.000050407496,0.000023526041,0.000062157415,0.00066269626,0.9982495,0.00008888547,0.000040460265,0.00021948043],"about_ca_topic_score_codex":0.00015173026,"about_ca_topic_score_gemma":0.000012403127,"teacher_disagreement_score":0.03313783,"about_ca_system_score_codex":0.00020024733,"about_ca_system_score_gemma":0.00012972545,"threshold_uncertainty_score":0.80372125},"labels":[],"label_agreement":null},{"id":"W1977150357","doi":"10.1039/b907925b","title":"Of proteins and DNA—proteomic role in the field of chromatin research","year":2009,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Chromatin; Computational biology; DNA; Biology; Proteomics; Field (mathematics); Cell biology; Evolutionary biology; Genetics; Gene","score_opus":0.017955173633224464,"score_gpt":0.3269788381197596,"score_spread":0.3090236644865351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977150357","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10533994,0.8921929,0.000038997532,0.000043387965,0.000029073995,0.0017993572,0.000044660832,0.0000023850175,0.00050929724],"genre_scores_gemma":[0.18763046,0.8115095,0.00036320268,0.000029209823,0.00007210717,0.0001850044,0.00012509097,0.000045075012,0.000040344967],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99774975,0.0006095564,0.0007048674,0.00038141283,0.0002862363,0.00026817116],"domain_scores_gemma":[0.9986827,0.000051808405,0.00035964668,0.00078318914,0.00008507811,0.00003758593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011849318,0.0002556415,0.0008009452,0.00017611502,0.000035776848,0.000024812269,0.00060182175,0.00045980775,0.000002158156],"category_scores_gemma":[0.00015256174,0.0001860333,0.00023031096,0.00028438025,0.00009050251,0.0000013481056,0.0001745209,0.000270267,0.0000013916595],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027517699,0.0002818767,0.00002233509,0.028268512,0.00025138786,0.00003498704,0.00026953057,0.0000055885857,0.7872617,0.0012122154,0.00036835187,0.18199596],"study_design_scores_gemma":[0.0011458417,0.003591066,0.00006655291,0.018812295,0.0003393485,0.00029100495,0.0005458641,0.00014223946,0.19631639,0.0006072425,0.7768794,0.0012627743],"about_ca_topic_score_codex":0.00010557091,"about_ca_topic_score_gemma":0.00004008112,"teacher_disagreement_score":0.776511,"about_ca_system_score_codex":0.00001923885,"about_ca_system_score_gemma":0.00019246066,"threshold_uncertainty_score":0.75862175},"labels":[],"label_agreement":null},{"id":"W1981768518","doi":"10.1039/c1mb05131h","title":"PNA-based artificial nucleases as antisense and anti-miRNA oligonucleotide agents","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Casa","funders":"","keywords":"microRNA; Oligonucleotide; Computational biology; Biology; DNA; Genetics; Gene","score_opus":0.01892214212528821,"score_gpt":0.25913453807879566,"score_spread":0.24021239595350746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981768518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961015,0.0003704299,0.0015574667,0.000073647054,0.00011664848,0.0002610876,0.000031770553,0.00010423807,0.0013831954],"genre_scores_gemma":[0.9960449,0.00007186673,0.0029500613,0.00060887664,0.00010208011,0.000008022511,0.000075100244,0.00005387701,0.0000852168],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983217,0.0001340743,0.00034976113,0.0006257436,0.00021048501,0.00035821018],"domain_scores_gemma":[0.9989769,0.0000059169292,0.00016600513,0.00056804594,0.000112540765,0.00017060646],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018954629,0.00030371003,0.00029744016,0.000119671706,0.000136734,0.000053063934,0.0001793226,0.00022470624,0.000009671697],"category_scores_gemma":[0.00007936192,0.00028094344,0.00018232237,0.00017693928,0.00018262402,0.0000057365482,0.00010426246,0.000088634195,0.000022598928],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006809528,0.00010880538,0.00105987,0.000029908218,0.00008828671,0.00014865752,0.000019631758,0.0000020783434,0.9967554,0.00015460211,0.00035103795,0.0012136206],"study_design_scores_gemma":[0.0002476787,0.00026513782,0.0006959375,0.000056248617,0.00007336182,0.00007904672,0.00006802788,0.00015584988,0.9938435,0.00008055823,0.0040549478,0.00037972943],"about_ca_topic_score_codex":0.00012620972,"about_ca_topic_score_gemma":0.000021816568,"teacher_disagreement_score":0.0037039097,"about_ca_system_score_codex":0.000013005261,"about_ca_system_score_gemma":0.000042532054,"threshold_uncertainty_score":0.9999643},"labels":[],"label_agreement":null},{"id":"W1982717186","doi":"10.1039/c3mb70135b","title":"High throughput strategies for probing the different organizational levels of protein interaction networks","year":2013,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Danish Agency for Science and Higher Education; Canadian Institutes of Health Research; Mokslo, Inovaciju ir Technologiju Agentura; Canada Research Chairs","keywords":"Protein–protein interaction; Protein Interaction Networks; Context (archaeology); Computer science; Computational biology; Systems biology; Interaction network; Throughput; Scale (ratio); Biology; Data science; Genetics; Gene; Telecommunications","score_opus":0.024609900786173772,"score_gpt":0.2709262275538411,"score_spread":0.24631632676766732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982717186","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004122976,0.8438407,0.15091428,0.000024721456,0.0005975928,0.0039567873,0.00014422285,0.000013807628,0.00009555808],"genre_scores_gemma":[0.20453872,0.7851018,0.0017918954,0.00011134485,0.0018836475,0.002236733,0.0034289046,0.0002980862,0.00060888147],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99815357,0.0001534535,0.00086687185,0.00036496468,0.00016389447,0.00029725506],"domain_scores_gemma":[0.9983101,0.000029152527,0.00083420944,0.000574791,0.00020210465,0.000049628583],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023915262,0.00044242377,0.00081369845,0.00005176424,0.0001098876,0.00014433995,0.00045331477,0.0005221313,0.000016685934],"category_scores_gemma":[0.000022943887,0.00027737019,0.00040763002,0.0001366822,0.00006998741,0.0000074441296,0.00018383248,0.00020956527,0.0000051772504],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008619297,0.0004114341,0.0000026294333,0.07248517,0.0061089015,0.0000057348993,0.00037392945,0.0047786823,0.067033544,0.06929242,0.0071908506,0.7722305],"study_design_scores_gemma":[0.0006677038,0.0005616232,9.3586453e-7,0.009085354,0.00074690674,0.00008092277,0.00032273558,0.0024207619,0.0064760656,0.00090040645,0.97752655,0.0012100555],"about_ca_topic_score_codex":0.000015815649,"about_ca_topic_score_gemma":0.000008830146,"teacher_disagreement_score":0.97033566,"about_ca_system_score_codex":0.000041354866,"about_ca_system_score_gemma":0.00020654102,"threshold_uncertainty_score":0.9999679},"labels":[],"label_agreement":null},{"id":"W1984248949","doi":"10.1039/c3mb25600f","title":"Exploring the multifunctionality of thioflavin- and deferiprone-based molecules as acetylcholinesterase inhibitors for potential application in Alzheimer's disease","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Cholinesterase and Neurodegenerative Diseases","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of British Columbia Hospital","funders":"Compute Canada","keywords":"Deferiprone; Acetylcholinesterase; Thioflavin; Disease; Chemistry; Pharmacology; Alzheimer's disease; Medicine; Biochemistry; Enzyme; Internal medicine","score_opus":0.04099823432556688,"score_gpt":0.280138095770606,"score_spread":0.23913986144503913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984248949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99268436,0.0014447047,0.0022375204,0.001150672,0.00011150296,0.0022931476,0.000044484306,0.00002602424,0.0000076038286],"genre_scores_gemma":[0.99750215,0.000021903059,0.0001407878,0.000514664,0.00011637098,0.0015260008,0.0001437029,0.000028640263,0.0000057659768],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987547,0.000108636996,0.00037242388,0.0003526678,0.00024129974,0.00017027733],"domain_scores_gemma":[0.9990957,0.000061303086,0.00011272514,0.00035354655,0.00021099563,0.00016575385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013826358,0.00018354293,0.00023533516,0.00010298595,0.00006622247,0.00003577998,0.000067518515,0.00003832373,0.0000041182425],"category_scores_gemma":[0.000092504095,0.00013447637,0.00013991431,0.00017966417,0.00007235369,0.00011924187,0.000030683972,0.00007633812,0.000005510406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005050822,0.0003405422,0.016644455,0.0003231849,0.00007334896,0.00002124579,0.00008418929,0.0005229566,0.978938,0.00014921126,0.000048738664,0.0023490868],"study_design_scores_gemma":[0.0045454013,0.00019628565,0.1435223,0.00038518515,0.0005169361,0.000021981881,0.00027122296,0.015364727,0.8343153,0.00007485183,0.00040226718,0.00038355],"about_ca_topic_score_codex":0.00027991855,"about_ca_topic_score_gemma":0.000009338814,"teacher_disagreement_score":0.14462267,"about_ca_system_score_codex":0.000019461224,"about_ca_system_score_gemma":0.00008041364,"threshold_uncertainty_score":0.54837877},"labels":[],"label_agreement":null},{"id":"W1986076932","doi":"10.1039/b615197n","title":"Introduction to monitoring and manipulating signaling networks","year":2006,"lang":"en","type":"editorial","venue":"Molecular BioSystems","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Computer science; Human–computer interaction","score_opus":0.004308852935897865,"score_gpt":0.22162621579130798,"score_spread":0.21731736285541012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986076932","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.18253362,0.013270264,0.02407674,0.00012966421,0.7788211,0.00088824675,0.000039790084,0.000104632345,0.00013590987],"genre_scores_gemma":[0.27895278,0.000059407026,0.00089713366,0.000009673339,0.7183454,0.00005019176,0.000878631,0.0001410005,0.0006658126],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99678457,0.0002111022,0.00060435943,0.0012708452,0.00057376456,0.0005553534],"domain_scores_gemma":[0.9983401,0.000025751451,0.00031499818,0.00084127137,0.00028055458,0.00019734047],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00056405994,0.000557999,0.00056621846,0.0001920813,0.00017661904,0.00018696046,0.000300845,0.001168214,0.000003699892],"category_scores_gemma":[0.0001630746,0.0006228614,0.00023383129,0.000309101,0.000036320882,0.0000038046755,0.00029461936,0.0003678634,0.000008876896],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022423697,0.000013001249,0.00028411625,0.000103198756,0.00023913446,0.000016262573,0.000006086277,0.0366484,0.4171145,0.0000018359231,0.5450981,0.00045289056],"study_design_scores_gemma":[0.0003273334,0.00019774283,0.000045126068,0.00023107878,0.0003062933,0.00001479636,0.000032491138,0.0013040215,0.10428999,0.0000034644374,0.89224625,0.0010014347],"about_ca_topic_score_codex":0.000117394025,"about_ca_topic_score_gemma":0.000024530838,"teacher_disagreement_score":0.3471481,"about_ca_system_score_codex":0.0000879693,"about_ca_system_score_gemma":0.00006886813,"threshold_uncertainty_score":0.9996223},"labels":[],"label_agreement":null},{"id":"W1987113119","doi":"10.1039/b900278m","title":"Domains in bacterial membranes and the action of antimicrobial agents","year":2009,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Membrane; Antimicrobial; Cationic polymerization; Antimicrobial peptides; Chemistry; Biological membrane; Biology; Biophysics; Biochemistry; Microbiology; Organic chemistry","score_opus":0.019524051787079066,"score_gpt":0.2977210965412482,"score_spread":0.2781970447541691,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987113119","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0774153,0.9198522,0.000008754066,0.000030357804,0.0008922691,0.0014943491,0.000091244285,0.0000089050745,0.00020660348],"genre_scores_gemma":[0.060207188,0.93878245,0.000019778618,0.00004733284,0.00040698654,0.000034800607,0.00037834706,0.00003982897,0.00008326252],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982844,0.00032129022,0.00059211534,0.0004309785,0.00014657898,0.00022464813],"domain_scores_gemma":[0.9990785,0.000013278981,0.00035566223,0.00047235432,0.00003436961,0.00004580769],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002987036,0.00035957198,0.0010676095,0.00011027882,0.000038854985,0.000036353576,0.00027624128,0.00049455895,0.0000072977264],"category_scores_gemma":[0.000031759315,0.00023202389,0.00038586883,0.00015363879,0.00013536587,0.0000029204455,0.00009610417,0.00016180237,0.000002061143],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000198752,0.000073757,0.000006473058,0.012011413,0.00025095805,0.000034136396,0.00004557523,8.8978686e-7,0.80190164,0.000059253467,0.00026641178,0.18515074],"study_design_scores_gemma":[0.001750809,0.00007390888,0.000007958246,0.0020821409,0.00052746123,0.00021952203,0.000010917045,4.8679055e-7,0.095629774,0.0000020382881,0.89934605,0.00034890216],"about_ca_topic_score_codex":0.000058075588,"about_ca_topic_score_gemma":0.000039597446,"teacher_disagreement_score":0.8990797,"about_ca_system_score_codex":0.00001618306,"about_ca_system_score_gemma":0.00010330301,"threshold_uncertainty_score":0.9461659},"labels":[],"label_agreement":null},{"id":"W1988350881","doi":"10.1039/c1mb05034f","title":"Characterization of non-8–17 sequences uncovers structurally diverse RNA-cleaving deoxyribozymes","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Francis Crick Institute","keywords":"Deoxyribozyme; RNA; DNA; Sequence motif; Ribozyme; Biology; Structural motif; Computational biology; Chemistry; Biochemistry; Genetics; Gene","score_opus":0.010791902138417462,"score_gpt":0.23709249895402876,"score_spread":0.2263005968156113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988350881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99190265,0.000069775306,0.0065272455,0.000014592432,0.00013088762,0.00020205052,0.000053787287,0.00003745261,0.0010615669],"genre_scores_gemma":[0.9962488,0.00006333137,0.0031106968,0.00009450459,0.00006649586,0.000004755441,0.00020618623,0.000023481967,0.00018177326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987687,0.00007203314,0.00034055972,0.00038665603,0.00020301406,0.00022903783],"domain_scores_gemma":[0.9990366,0.0000031751533,0.0003035934,0.00041600017,0.00017039069,0.00007025446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000150572,0.00021723885,0.0002518305,0.00009471159,0.00007025372,0.000019188248,0.00024607856,0.0001869416,0.0000075706857],"category_scores_gemma":[0.000031037096,0.00018850682,0.00017196887,0.00019097433,0.00012264166,0.00001115771,0.00010277084,0.00006477084,0.0000020808395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040025643,0.000021550124,0.0015599786,0.000033260152,0.00009851887,0.000014075464,0.000069662485,0.0000022251681,0.9971376,0.000045176956,0.000039336403,0.0009386071],"study_design_scores_gemma":[0.00016324641,0.00020222527,0.0015169684,0.00006350862,0.000049967945,0.000016625374,0.00016715429,0.000040276882,0.9971154,0.00002580759,0.00039914553,0.00023970485],"about_ca_topic_score_codex":0.000117649935,"about_ca_topic_score_gemma":0.00003516962,"teacher_disagreement_score":0.0043461327,"about_ca_system_score_codex":0.000018779245,"about_ca_system_score_gemma":0.000053242504,"threshold_uncertainty_score":0.7687085},"labels":[],"label_agreement":null},{"id":"W1989065363","doi":"10.1039/c1mb05122a","title":"Small delay, big waves: a minimal delayed negative feedback model captures <i>Escherichia coli</i> single cell SOS kinetics","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Christie (Canada)","funders":"","keywords":"SOS response; Escherichia coli; Biological system; Kinetics; Ordinary differential equation; Negative feedback; Noise (video); Biophysics; Positive feedback; Dynamics (music); Biology; Gene; Differential equation; Physics; Genetics; Computer science; Classical mechanics","score_opus":0.02280044562887158,"score_gpt":0.19917521494695994,"score_spread":0.17637476931808838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989065363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821094,0.0012479029,0.010850883,0.00008543422,0.0005091129,0.0006787423,0.0001730533,0.000071236456,0.004274236],"genre_scores_gemma":[0.9848511,0.00009687022,0.013303671,0.0006510264,0.00024300277,0.00006270859,0.00015333349,0.00012089419,0.0005173492],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973576,0.00015381131,0.0006092799,0.0009138911,0.00022126302,0.00074417586],"domain_scores_gemma":[0.99829924,0.000008440279,0.00030564374,0.00090149307,0.00024072311,0.00024448484],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015718368,0.0005661523,0.00045263924,0.00011324817,0.000104127466,0.00007272578,0.00066424644,0.0009702682,0.0000146790435],"category_scores_gemma":[0.000042647942,0.0005439821,0.00026888683,0.00025133046,0.00024634995,0.000003797901,0.00037179975,0.0002467795,0.00003132637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002748629,0.00037994713,0.000028856644,0.000058214828,0.00015308813,0.000048703452,0.00022515775,0.000114709284,0.9977953,0.00007504302,0.00051441515,0.00033169537],"study_design_scores_gemma":[0.0010687119,0.0017023805,0.000038726244,0.000028404178,0.00010331607,0.00004437141,0.00017341031,0.0011696994,0.9896538,0.00012421227,0.005193292,0.0006996248],"about_ca_topic_score_codex":0.00022428708,"about_ca_topic_score_gemma":0.00027986313,"teacher_disagreement_score":0.008141455,"about_ca_system_score_codex":0.000039105285,"about_ca_system_score_gemma":0.00013752088,"threshold_uncertainty_score":0.99970114},"labels":[],"label_agreement":null},{"id":"W1989851220","doi":"10.1039/c2mb25016k","title":"Positional requirements for the stimulation of mRNA nuclear export by ALREX-promoting elements","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research; School for Social Care Research","keywords":"Nuclear export signal; Messenger RNA; Cytoplasm; Cell biology; ENCODE; Stimulation; Biology; Nuclear gene; Mitochondrion; Gene; Computational biology; Cell nucleus; Genetics; Mitochondrial DNA; Neuroscience","score_opus":0.01846529828121174,"score_gpt":0.29610349445996875,"score_spread":0.277638196178757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989851220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923299,0.0011879455,0.005387832,0.00010519261,0.00012943578,0.00059911935,0.000056326047,0.000007018368,0.00019720609],"genre_scores_gemma":[0.99865836,0.000015555575,0.00048710112,0.00011272267,0.00014796054,0.000043289,0.00025922447,0.00002748646,0.00024830553],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988352,0.00006366579,0.00029598048,0.00018279254,0.0002930862,0.00032929663],"domain_scores_gemma":[0.99937326,0.000014299546,0.00014692928,0.0002686947,0.00011017424,0.00008662795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006046128,0.000112835514,0.00010969003,0.00002788693,0.00013004238,0.000021768552,0.0001855218,0.00007926233,0.00001830139],"category_scores_gemma":[0.00007506542,0.00008991204,0.000103859056,0.00006183442,0.000033690798,0.000008326494,0.00007693617,0.00004392329,0.000004690111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045352237,0.00006284376,0.004273043,0.000044251923,0.000109678855,3.6227988e-7,0.000030090232,0.000009323292,0.9926113,0.00011550722,0.0021275152,0.00057073054],"study_design_scores_gemma":[0.00073450257,0.00029078792,0.001549188,0.00004088336,0.000029845583,0.000007709044,0.00010426031,0.0020381124,0.9828553,0.000007876706,0.01219064,0.0001508868],"about_ca_topic_score_codex":0.000024973999,"about_ca_topic_score_gemma":0.0000010097872,"teacher_disagreement_score":0.010063125,"about_ca_system_score_codex":0.000020268963,"about_ca_system_score_gemma":0.000021389556,"threshold_uncertainty_score":0.36665067},"labels":[],"label_agreement":null},{"id":"W1991553913","doi":"10.1039/c3mb70190e","title":"Dynamics of the intrinsically disordered protein CP12 in its association with GAPDH in the green alga <i>Chlamydomonas reinhardtii</i> : a fuzzy complex","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Nationale de la Recherche; University of Windsor; Centre National de la Recherche Scientifique; Aix-Marseille Université","keywords":"Chlamydomonas reinhardtii; Biology; Glyceraldehyde 3-phosphate dehydrogenase; Computational biology; Dynamics (music); Cell biology; Biochemistry; Gene; Messenger RNA; Physics","score_opus":0.004275165567612711,"score_gpt":0.1951292497338983,"score_spread":0.1908540841662856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991553913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99334055,0.00023555655,0.00058261026,0.0024693739,0.000046300753,0.0021272535,0.000038389415,0.0000084255735,0.0011515626],"genre_scores_gemma":[0.9988305,0.000007901565,0.0002075994,0.0003353719,0.000042647953,0.00024844875,0.000103695755,0.000028283084,0.00019557092],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980388,0.00043339387,0.00042900446,0.00034710483,0.00041643978,0.0003352184],"domain_scores_gemma":[0.99886936,0.000018899893,0.00030430997,0.0006099731,0.0001592191,0.00003822034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041826,0.00022952506,0.00027308695,0.000060558057,0.000053276777,0.000044002692,0.00057028735,0.0002570368,0.0000039726233],"category_scores_gemma":[0.00012564828,0.00014035289,0.00010770181,0.00042859255,0.00006276811,0.000008593403,0.0001531112,0.00024031525,0.000004158309],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006688782,0.000097496544,0.018753052,0.0001099491,0.00006640112,0.000011065653,0.00016361654,0.00012676913,0.9780488,0.0018197049,0.00009537616,0.00064087304],"study_design_scores_gemma":[0.011642819,0.002230086,0.27294666,0.0011242807,0.00018437489,0.00020633651,0.0018265243,0.01797569,0.67536795,0.008054316,0.005713804,0.0027271851],"about_ca_topic_score_codex":0.0010758076,"about_ca_topic_score_gemma":0.004386261,"teacher_disagreement_score":0.30268088,"about_ca_system_score_codex":0.00008812918,"about_ca_system_score_gemma":0.00008887981,"threshold_uncertainty_score":0.57234246},"labels":[],"label_agreement":null},{"id":"W1991623589","doi":"10.1039/c1mb05075c","title":"Entropy and Mg2+ control ligand affinity and specificity in the malachite green binding RNA aptamer","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"National Center for Research Resources; University of California, San Francisco; National Institutes of Health; National Science Council","keywords":"Aptamer; Isothermal titration calorimetry; Riboswitch; Chemistry; Ligand (biochemistry); RNA; Titration; Metal ions in aqueous solution; Biophysics; Stereochemistry; Metal; Biochemistry; Biology; Non-coding RNA; Inorganic chemistry","score_opus":0.014605737967159341,"score_gpt":0.20579246608587937,"score_spread":0.19118672811872003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991623589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99478185,0.0018986595,0.0012832546,0.00016968748,0.00009120625,0.00051670073,0.000023503462,0.000009461496,0.0012257025],"genre_scores_gemma":[0.9990969,0.00014123943,0.00027060648,0.00025407484,0.00009215797,0.00004189394,0.000008615054,0.00002244772,0.00007208104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861777,0.00031965654,0.00024015644,0.00039644583,0.00015300127,0.0002729579],"domain_scores_gemma":[0.9994096,0.000019362918,0.00010116436,0.00036515985,0.00002601967,0.00007869511],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062684726,0.00020614392,0.0002177534,0.00006241087,0.000089426336,0.000053877782,0.00021259389,0.00017279458,0.0000075647094],"category_scores_gemma":[0.00004366898,0.00015353377,0.000063642074,0.00008316994,0.000087797875,0.0000051460997,0.00007632776,0.00010190798,0.000007132821],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008677177,0.000034957964,0.0040292926,0.00003115685,0.00004262894,0.000039738385,0.00026036613,2.5886968e-7,0.9933469,0.0008385556,0.000021119085,0.0012682213],"study_design_scores_gemma":[0.00092884095,0.0002690502,0.0034382807,0.00004502607,0.000035559482,0.00008983717,0.00035074123,0.000032604887,0.99181384,0.0002677247,0.0024504415,0.00027804423],"about_ca_topic_score_codex":0.00024438466,"about_ca_topic_score_gemma":0.00005651228,"teacher_disagreement_score":0.0043150596,"about_ca_system_score_codex":0.0000065080853,"about_ca_system_score_gemma":0.000014251742,"threshold_uncertainty_score":0.62609255},"labels":[],"label_agreement":null},{"id":"W1994325676","doi":"10.1039/c4mb00220b","title":"Renal protein reactivity and stability of antibiotic amphenicols: structure and affinity","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein purification and stability","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Royal Society of Chemistry; Royal Society","keywords":"Reactivity (psychology); Antibiotics; Chemistry; Protein stability; Microbiology; Biochemistry; Biology; Medicine; Pathology","score_opus":0.007858789646993275,"score_gpt":0.2212132570944749,"score_spread":0.21335446744748163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994325676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995896,0.0008130107,0.0022019793,0.000093825125,0.000032497264,0.0006628842,0.000059880138,0.000013626335,0.00022632591],"genre_scores_gemma":[0.99903744,0.000010306956,0.0008302526,0.00002830891,0.000031723925,0.000010652308,0.000029695662,0.000013447565,0.000008195263],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985468,0.00039131806,0.00026599874,0.00047643163,0.00015074357,0.00016871955],"domain_scores_gemma":[0.9990361,0.000014873683,0.00015661266,0.0005865916,0.00010120438,0.0001046257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000601274,0.00016539618,0.00024251177,0.000029052777,0.00005998252,0.000025843823,0.000114964016,0.00019122669,0.0000054741126],"category_scores_gemma":[0.00038088227,0.00015030731,0.000051573497,0.000078720346,0.00020506425,0.0000053118174,0.00011021091,0.00009459819,4.30626e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057312976,0.000047612684,0.0071749003,0.00020180244,0.000021591368,4.4484e-7,0.000027492622,4.293262e-7,0.9902001,0.00042516715,0.0000036598683,0.0018394775],"study_design_scores_gemma":[0.00039471113,0.00021724805,0.011776838,0.000028875329,0.000011983767,0.000010335319,0.000024540372,0.00006379756,0.9857432,0.00021277729,0.001355397,0.00016027899],"about_ca_topic_score_codex":0.00005917584,"about_ca_topic_score_gemma":0.000050699226,"teacher_disagreement_score":0.004601938,"about_ca_system_score_codex":0.0000102342865,"about_ca_system_score_gemma":0.00004114275,"threshold_uncertainty_score":0.6129354},"labels":[],"label_agreement":null},{"id":"W1995318935","doi":"10.1039/b813787k","title":"Systems biology evaluation of immune responses induced by human host defence peptide LL-37 in mononuclear cells","year":2009,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"","keywords":"Transcription factor; Biology; CD14; Peripheral blood mononuclear cell; Cell biology; Immune system; Molecular biology; Gene; Immunology; Genetics","score_opus":0.019339890807170357,"score_gpt":0.2696138224028816,"score_spread":0.25027393159571126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995318935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99230236,0.0056201797,0.00006788401,0.00007855418,0.00044556867,0.00069939165,0.00008650169,0.000044823842,0.00065474503],"genre_scores_gemma":[0.99942374,0.000035179677,0.000016380902,0.000053541953,0.000017710921,0.00001977396,0.00010683142,0.00002296878,0.00030386605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99716824,0.0011839526,0.0007311147,0.00041260483,0.00009153018,0.00041253318],"domain_scores_gemma":[0.99897325,0.000059874943,0.00033912307,0.00044096966,0.00016354155,0.000023228844],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012277263,0.0002621487,0.0005662487,0.00021018769,0.000119039556,0.00002789327,0.00030998702,0.00040787138,0.000046299923],"category_scores_gemma":[0.00007468387,0.0002522874,0.00014040736,0.00022410775,0.00014554395,0.000086035674,0.00005619913,0.00025336875,0.00007613552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000090455615,0.0001396462,0.0001623041,0.000034268425,0.00006512798,0.0000039632737,0.00021162846,0.000050636183,0.9979455,0.0007373732,0.0003464605,0.00021264011],"study_design_scores_gemma":[0.0012063967,0.00050952245,0.00149755,0.00023463025,0.000052998104,0.000022551134,0.0006312757,0.00004514934,0.99504066,0.00004941785,0.0004286403,0.00028122694],"about_ca_topic_score_codex":0.0021237188,"about_ca_topic_score_gemma":0.000028055852,"teacher_disagreement_score":0.0071213953,"about_ca_system_score_codex":0.0000979498,"about_ca_system_score_gemma":0.00007465306,"threshold_uncertainty_score":0.9999929},"labels":[],"label_agreement":null},{"id":"W1999971214","doi":"10.1039/b915986j","title":"An integrated global strategy for cell lysis, fractionation, enrichment and mass spectrometric analysis of phosphorylated peptides","year":2010,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Phosphoproteomics; Phosphopeptide; Fractionation; Phosphorylation; Chemistry; Phosphatase; Lysis; Fragmentation (computing); Chromatography; Protein phosphorylation; Biochemistry; Computational biology; Biology; Protein kinase A","score_opus":0.006126744908198627,"score_gpt":0.27387864855476074,"score_spread":0.2677519036465621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999971214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7454089,0.00019833221,0.2531572,0.000018273304,0.000015590607,0.00023299546,0.00030252425,0.0000703943,0.00059579295],"genre_scores_gemma":[0.96726155,0.000026886404,0.031992827,0.0000083333525,0.000016663686,0.0001373548,0.00049202103,0.0000140553,0.00005028761],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900985,0.000011780026,0.00033018473,0.00033125546,0.00015249383,0.00016445052],"domain_scores_gemma":[0.999005,0.00002620294,0.0002559486,0.00038716733,0.00024462718,0.00008101856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013969548,0.0001484704,0.0002594964,0.00018750221,0.00007307337,0.00004471536,0.00016444975,0.00015469166,0.00006844832],"category_scores_gemma":[0.000021971262,0.00014524972,0.00011835637,0.0012904418,0.000034158387,0.00005492076,0.000015118121,0.000114166425,7.932703e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012423879,0.00009754424,0.0029252423,0.00004337013,0.00022499045,7.151235e-7,0.000007624606,0.0003214221,0.9937698,0.0019944382,0.00001489695,0.0005875353],"study_design_scores_gemma":[0.0002356105,0.000049940136,0.00040659882,0.000005945512,0.00036888392,0.000001896884,0.00011855731,0.017232914,0.97938865,0.000962042,0.0010616872,0.00016724685],"about_ca_topic_score_codex":0.00017053298,"about_ca_topic_score_gemma":0.000026702133,"teacher_disagreement_score":0.22185268,"about_ca_system_score_codex":0.00006880033,"about_ca_system_score_gemma":0.000034139386,"threshold_uncertainty_score":0.5923112},"labels":[],"label_agreement":null},{"id":"W2000572998","doi":"10.1039/c4mb00334a","title":"Serum metabonomic analysis of apoE−/− mice reveals progression axes for atherosclerosis based on NMR spectroscopy","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of British Columbia","keywords":"Taurine; Valine; Choline; Lipid metabolism; Metabolomics; Carnosine; Internal medicine; Chemistry; Biochemistry; Nuclear magnetic resonance spectroscopy; Arteriosclerosis; Endocrinology; Medicine; Biology; Amino acid; Bioinformatics","score_opus":0.009107168915824767,"score_gpt":0.2642485008249194,"score_spread":0.25514133190909466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000572998","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96264184,0.0009017789,0.034398574,0.00019045081,0.0001871267,0.00070116884,0.00024497558,0.000020838663,0.0007132351],"genre_scores_gemma":[0.9933081,0.00007024548,0.005736639,0.000271952,0.00012217752,0.00013117575,0.00018897357,0.000048011967,0.00012270028],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980372,0.00019672257,0.0004920008,0.0006578149,0.00023342263,0.0003828345],"domain_scores_gemma":[0.99860066,0.00004727695,0.00037908516,0.00073675707,0.00014124146,0.00009496151],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007392248,0.0003123515,0.0007373738,0.00032569657,0.00010378477,0.000035464058,0.00030099752,0.0001795986,0.00001202463],"category_scores_gemma":[0.00017289486,0.000268927,0.0005818119,0.0004870202,0.000065513465,0.0000029570847,0.00007611886,0.00006438199,0.0000032219057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012304439,0.000109933615,0.0043904716,0.000089449364,0.0009719494,2.0723674e-7,0.000010476573,0.0004826542,0.9925154,0.0007904575,0.0003118187,0.00020415617],"study_design_scores_gemma":[0.0008703123,0.00080571277,0.0037050294,0.000046524085,0.0008275169,3.9587616e-7,0.000023203862,0.006160791,0.98083204,0.00004163615,0.00637898,0.0003078535],"about_ca_topic_score_codex":0.000018118182,"about_ca_topic_score_gemma":0.00002069405,"teacher_disagreement_score":0.030666275,"about_ca_system_score_codex":0.000024603263,"about_ca_system_score_gemma":0.000030222627,"threshold_uncertainty_score":0.9999763},"labels":[],"label_agreement":null},{"id":"W2002915767","doi":"10.1039/c1mb05080j","title":"Alterations in urinary metabolites due to unilateral ureteral obstruction in a rodent model","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Marine Biosciences; Dalhousie University","funders":"","keywords":"Taurine; Urinary system; Osmolyte; Metabolite; Chemistry; Carnitine; Internal medicine; Creatinine; Pathophysiology; Rodent; Endocrinology; Choline; Biochemistry; Biology; Medicine; Amino acid","score_opus":0.016774974851015412,"score_gpt":0.2378675932126341,"score_spread":0.22109261836161867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002915767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99267054,0.001181114,0.0041094543,0.0000722826,0.00021059274,0.00039928252,0.00002221755,0.000011776466,0.0013227602],"genre_scores_gemma":[0.9949956,0.000046824844,0.004335443,0.0001790897,0.000053641783,0.00011703562,0.000048447942,0.00002527415,0.00019865786],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859613,0.000101234706,0.00037628913,0.00045979943,0.00012695683,0.00033956152],"domain_scores_gemma":[0.9994385,0.0000024560522,0.00006187467,0.0003604398,0.000049482842,0.00008722806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002067684,0.00021026614,0.00028668807,0.00028014655,0.000041194115,0.000026995185,0.00017850632,0.000118949894,0.000008338208],"category_scores_gemma":[0.0000335438,0.00020775062,0.00009111552,0.0002862272,0.000022982873,0.000008098846,0.00014569596,0.00009577351,0.0000072330104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008906618,0.00012983734,0.006394846,0.000022031365,0.000038744536,0.00006809172,0.00043946263,0.00089085515,0.9890166,0.0027655824,0.000035845558,0.000109051194],"study_design_scores_gemma":[0.0017244746,0.0006713435,0.053675666,0.00008781461,0.000046070563,0.00019699901,0.00036441218,0.009224996,0.92933935,0.0013482161,0.0023332078,0.0009874651],"about_ca_topic_score_codex":0.00028729596,"about_ca_topic_score_gemma":0.00033809157,"teacher_disagreement_score":0.059677254,"about_ca_system_score_codex":0.000035096604,"about_ca_system_score_gemma":0.0000336988,"threshold_uncertainty_score":0.84718245},"labels":[],"label_agreement":null},{"id":"W2003480595","doi":"10.1039/c4mb00265b","title":"Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University; Canada Research Chairs; University of Toronto; SickKids Foundation; Hospital for Sick Children; Toronto Public Health","funders":"National Institute of General Medical Sciences","keywords":"microRNA; Dilated cardiomyopathy; Apoptosis; Computational biology; Biology; Cardiomyopathy; Bioinformatics; Cell biology; Gene; Cardiology; Medicine; Genetics; Heart failure","score_opus":0.006184597849502175,"score_gpt":0.22730419565829166,"score_spread":0.22111959780878948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003480595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98674756,0.0017580339,0.010276394,0.000040816107,0.00019166514,0.00080111803,0.000027736509,0.000011692322,0.00014499623],"genre_scores_gemma":[0.99950105,0.000009248598,0.000096315,0.0000102647855,0.00010873207,0.000051535535,0.00014316221,0.00002921582,0.000050469498],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99632525,0.0018219479,0.0007968813,0.0004125456,0.00036788062,0.00027550806],"domain_scores_gemma":[0.9980816,0.00006884907,0.0005653219,0.00095335545,0.00026505624,0.000065805325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002135521,0.00022299137,0.0005607238,0.00016992379,0.000046805977,0.000024629164,0.000299715,0.00022058806,0.000003085808],"category_scores_gemma":[0.00027818725,0.00018065225,0.00033888622,0.0010047455,0.00011055693,0.00000518275,0.00009353587,0.00006812317,0.0000018685108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004411438,0.000039272905,0.0129201785,0.00015897228,0.0005349913,0.0000015215962,0.000063898726,0.054938473,0.93040216,0.00042160595,0.00004105484,0.00003673255],"study_design_scores_gemma":[0.0016102986,0.00054659863,0.38543573,0.00048605382,0.0010709802,0.000015976902,0.00019292711,0.03187572,0.5765819,0.000111539935,0.0014484334,0.0006238456],"about_ca_topic_score_codex":0.00011096221,"about_ca_topic_score_gemma":0.000020707294,"teacher_disagreement_score":0.37251556,"about_ca_system_score_codex":0.00004006877,"about_ca_system_score_gemma":0.00006597392,"threshold_uncertainty_score":0.7366785},"labels":[],"label_agreement":null},{"id":"W2004102563","doi":"10.1039/c0mb00313a","title":"Simultaneous determination of urinary cortisol, cortisone and corticosterone in parachutists, depressed patients and healthy controls in view of biomedical and pharmacokinetic studies","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Stress Responses and Cortisol","field":"Neuroscience","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"World Anti-Doping Agency","keywords":"Cortisone; Chromatography; Chemistry; Pharmacokinetics; Corticosterone; Urine; Analyte; Glucocorticoid; Coefficient of variation; Endocrinology; Internal medicine; Detection limit; Solid phase extraction; Urinary system; Hormone; Medicine","score_opus":0.03267077926776586,"score_gpt":0.3029915944301293,"score_spread":0.27032081516236345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004102563","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875759,0.011407711,0.000118365955,0.000022843484,0.00007642365,0.0007491897,0.00003215991,0.000008293475,0.00000911501],"genre_scores_gemma":[0.9951635,0.004622601,0.000068524205,0.00008143013,0.0000031647094,0.000043306787,0.0000019427168,0.000012995605,0.0000025595073],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982142,0.00027086964,0.0006906723,0.00036479105,0.0002406148,0.00021889668],"domain_scores_gemma":[0.9991315,0.0002766335,0.00031104233,0.00013792668,0.000049209953,0.00009367308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000066097164,0.00015965744,0.00048843795,0.00019326514,0.000024363146,0.000008643153,0.0000835505,0.00006943936,0.000002391053],"category_scores_gemma":[0.00038004344,0.00014654048,0.000019655772,0.0002017481,0.00029869104,0.00005722503,0.00010763704,0.00008336177,2.6452298e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012844258,0.00063864037,0.08679602,0.0010280862,0.000014118076,0.0006053828,0.0009550148,0.0000014698669,0.8403601,0.000045302764,7.9503656e-7,0.06827063],"study_design_scores_gemma":[0.017897252,0.011502922,0.5682233,0.0019162451,0.00014179663,0.0004690858,0.0006448646,0.024486734,0.3737617,0.000110367335,0.00008335328,0.0007623549],"about_ca_topic_score_codex":0.00013295302,"about_ca_topic_score_gemma":0.00003603861,"teacher_disagreement_score":0.48142728,"about_ca_system_score_codex":0.0000190569,"about_ca_system_score_gemma":0.000017134527,"threshold_uncertainty_score":0.5975748},"labels":[],"label_agreement":null},{"id":"W2004985564","doi":"10.1039/c2mb00007e","title":"Synthetic antibodies as tools to probe RNA-binding protein function","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada); Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Immunoprecipitation; RNA-binding protein; Biology; RNA; Computational biology; RNA splicing; Antibody; Function (biology); Cell biology; Gene; Genetics","score_opus":0.01555096059803495,"score_gpt":0.26887748934994943,"score_spread":0.25332652875191447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004985564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98835015,0.0008304328,0.0068972376,0.00017993659,0.00023749059,0.0010126118,0.000011598043,0.00003613341,0.0024444228],"genre_scores_gemma":[0.9944048,0.000007793445,0.00044526608,0.00014766507,0.00027621895,0.00017028849,0.000054176286,0.000046316825,0.0044474998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99822694,0.0001466807,0.0002445686,0.00038903693,0.0003274758,0.0006652777],"domain_scores_gemma":[0.9990268,0.000006832283,0.00006960116,0.0004920549,0.00009295053,0.0003117722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005319465,0.00021538927,0.00019008508,0.00011349156,0.00014377887,0.00011058626,0.00021586679,0.00015838322,0.000023297813],"category_scores_gemma":[0.00027910966,0.00019534491,0.0001200823,0.00018231223,0.000033085355,0.000013772104,0.00016444281,0.0001064157,0.00036525444],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000073632655,0.000047441634,0.0006931317,0.00007409066,0.000064063344,0.000008345764,0.000032861706,0.0000048158436,0.996552,0.0006096251,0.00032670848,0.0015132852],"study_design_scores_gemma":[0.00021290201,0.0004003676,0.00018443681,0.00011444173,0.000013947053,0.000035293033,0.00014790468,0.000010788939,0.9836124,0.000013990545,0.014987332,0.00026616143],"about_ca_topic_score_codex":0.000053063108,"about_ca_topic_score_gemma":0.0000065776903,"teacher_disagreement_score":0.014660624,"about_ca_system_score_codex":0.000036673893,"about_ca_system_score_gemma":0.00005183414,"threshold_uncertainty_score":0.7965934},"labels":[],"label_agreement":null},{"id":"W2005000963","doi":"10.1039/b905382d","title":"Signaling network analysis of ubiquitin-mediated proteins suggests correlations between the 26S proteasome and tumor progression","year":2009,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; National Research Council Canada; Biotechnology Research Institute","funders":"","keywords":"Ubiquitin; Proteasome; Biology; Signaling proteins; Cell biology; Signal transduction; Computational biology; Genetics; Gene","score_opus":0.00984532558462609,"score_gpt":0.2525455337622432,"score_spread":0.24270020817761712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005000963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919754,0.0021995287,0.0034098,0.00026166023,0.00005112199,0.0016643896,0.00008922163,0.000035270943,0.00031358493],"genre_scores_gemma":[0.99832565,0.000014155167,0.0006780399,0.00015898485,0.00022948731,0.00012471956,0.0004075611,0.000024062256,0.000037338315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980256,0.00034543694,0.00049359316,0.00044432073,0.00031691577,0.00037411513],"domain_scores_gemma":[0.99879664,0.000042533844,0.00036570866,0.00050946546,0.0001538042,0.00013186749],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071664556,0.00025064274,0.00040190024,0.00012730132,0.00020270066,0.000054030006,0.00026199248,0.00018865384,0.000009351027],"category_scores_gemma":[0.00015974157,0.00018715921,0.00020497417,0.0007916911,0.00010844978,0.0000059935655,0.000092929986,0.00016506191,0.000003541912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047607595,0.000045141885,0.020622533,0.000053728516,0.00052174745,0.00001122217,0.00009144392,0.00081506645,0.97650933,0.00023712269,0.00007918287,0.0009658673],"study_design_scores_gemma":[0.0006890341,0.0010237913,0.025053365,0.0002833825,0.00081135525,0.00002136023,0.000084770814,0.002545078,0.96614945,0.0001660673,0.0026539916,0.0005183805],"about_ca_topic_score_codex":0.000022625509,"about_ca_topic_score_gemma":0.000009923401,"teacher_disagreement_score":0.010359914,"about_ca_system_score_codex":0.000016330725,"about_ca_system_score_gemma":0.00008521765,"threshold_uncertainty_score":0.7632131},"labels":[],"label_agreement":null},{"id":"W2011305479","doi":"10.1039/c2mb25348h","title":"Biochemical measurements on single erythroid progenitor cells shed light on the combinatorial regulation of red blood cell production","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Erythrocyte Function and Pathophysiology","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Downregulation and upregulation; Erythropoietin; Stem cell factor; Progenitor cell; Cell biology; Erythropoiesis; Biology; Bone marrow; Stem cell; Kinase; Molecular biology; Immunology; Biochemistry; Anemia; Endocrinology; Internal medicine; Medicine","score_opus":0.023574559690173275,"score_gpt":0.22707574805202754,"score_spread":0.20350118836185427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011305479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920306,0.00018858405,0.000016905062,0.0006847798,0.0038606927,0.0010692719,0.0000033076522,0.000051852327,0.0020939787],"genre_scores_gemma":[0.9984583,0.0000026845576,0.000058259266,0.00013080191,0.0010540333,0.000040746814,0.00003687902,0.000031031075,0.00018725728],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983791,0.00025251534,0.0003404403,0.00028615302,0.0004993008,0.00024246972],"domain_scores_gemma":[0.99897116,0.000021154028,0.0002148138,0.00050701975,0.00018547339,0.00010036603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037751347,0.00018405911,0.00027499913,0.000089632544,0.000068782385,0.000007948279,0.00007288472,0.00018910444,0.000035367368],"category_scores_gemma":[0.00012013031,0.00012815779,0.00013312668,0.00022466278,0.000046241486,0.000028596956,0.000018765133,0.00015268101,0.000065003085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046845205,0.0013784892,0.00033374774,0.00014591945,0.000076710094,0.0000013303522,0.000095771466,0.000003148443,0.9940753,0.00014108517,0.0032555126,0.000024540119],"study_design_scores_gemma":[0.0012333469,0.0011240899,0.0004007173,0.00015913461,0.00013162104,0.000015787342,0.000037830992,0.000008263159,0.9948623,0.000014388929,0.0018938758,0.000118618496],"about_ca_topic_score_codex":0.0000042044285,"about_ca_topic_score_gemma":1.3617267e-7,"teacher_disagreement_score":0.006427679,"about_ca_system_score_codex":0.0000757174,"about_ca_system_score_gemma":0.00003237358,"threshold_uncertainty_score":0.5226123},"labels":[],"label_agreement":null},{"id":"W2012513430","doi":"10.1039/b921912a","title":"A chemiluminescence-based method for identification of histone lysine methyltransferase inhibitors","year":2010,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"Canadian Institutes of Health Research; National Institutes of Health; Wellcome Trust","keywords":"Histone methyltransferase; Histone; EZH2; Methyltransferase; Epigenetics; Biochemistry; Biotinylation; Acetylation; Biology; Methylation; Chemistry; Molecular biology; DNA; Gene","score_opus":0.007062271365308719,"score_gpt":0.31000126661080485,"score_spread":0.3029389952454961,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012513430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.60889596,0.0005610345,0.3895231,0.000119448574,0.00034497769,0.00043579898,0.000050972478,0.000010770773,0.000057953624],"genre_scores_gemma":[0.98053616,0.000011444866,0.018629536,0.00004056272,0.00017290283,0.0001094158,0.00036477065,0.000038822207,0.000096377145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985768,0.000082443774,0.00053426623,0.00041377597,0.00019934769,0.0001933728],"domain_scores_gemma":[0.99877554,0.00002788403,0.00023062115,0.0005458714,0.0003363724,0.00008369045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008358522,0.00018017103,0.00023039311,0.00010375291,0.00005425561,0.000019529985,0.00019060167,0.00024673983,0.000005578518],"category_scores_gemma":[0.0002483008,0.00018246344,0.00021839153,0.00017807048,0.0000636127,0.0000029888693,0.000020077454,0.000079547804,0.0000016093951],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005041712,0.0000804167,0.00022317885,0.00013589313,0.000035384157,6.8206066e-7,0.000018972842,0.00012169504,0.99743134,0.00013811914,0.000057905338,0.0017060145],"study_design_scores_gemma":[0.000658269,0.00014853428,0.00009958691,0.000015301737,0.00005497908,0.0000016339893,0.000012781437,0.002063454,0.99066275,0.000064540065,0.006018874,0.00019927749],"about_ca_topic_score_codex":0.000049102357,"about_ca_topic_score_gemma":0.000030179057,"teacher_disagreement_score":0.3716402,"about_ca_system_score_codex":0.000011211354,"about_ca_system_score_gemma":0.00008898139,"threshold_uncertainty_score":0.7440643},"labels":[],"label_agreement":null},{"id":"W2013616784","doi":"10.1039/c3mb90018e","title":"Network Biology editorial 2013","year":2013,"lang":"en","type":"editorial","venue":"Molecular BioSystems","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Computer science; Biology; Data science; Computational biology","score_opus":0.0035640224472649595,"score_gpt":0.21738598123513259,"score_spread":0.21382195878786764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013616784","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00026411327,0.0069028432,0.0038645763,0.000086671054,0.9855181,0.00086028734,0.0003211295,0.000056483826,0.0021258092],"genre_scores_gemma":[0.0028348214,0.00046067382,0.0004946739,0.00018666023,0.9866267,0.00019450906,0.0071126935,0.00018216419,0.0019071361],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.996185,0.000248593,0.00094864314,0.0009681135,0.00058775814,0.0010618756],"domain_scores_gemma":[0.9970535,0.00006483657,0.00063224556,0.001429519,0.0005349776,0.0002849094],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007009806,0.00081228925,0.0008271884,0.00009319425,0.00017060804,0.00021069692,0.0010355327,0.004575161,0.00005688899],"category_scores_gemma":[0.00019659191,0.0007647989,0.00040647193,0.0001680419,0.00015103888,0.0000054895904,0.0005853871,0.00092106,0.00051478774],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004108354,0.000024726647,0.0000040522896,0.000118551616,0.0002838417,0.000004322723,0.000008712935,0.00009716053,0.021826137,0.00014811596,0.9771466,0.0002966716],"study_design_scores_gemma":[0.00068552565,0.00039148875,3.3640424e-7,0.00010683504,0.00008115453,0.000005314753,0.00000897908,0.000078376215,0.0007607195,0.00068735576,0.9963143,0.000879641],"about_ca_topic_score_codex":0.00030965012,"about_ca_topic_score_gemma":0.000052651965,"teacher_disagreement_score":0.021065418,"about_ca_system_score_codex":0.00006276097,"about_ca_system_score_gemma":0.00043054708,"threshold_uncertainty_score":0.9994803},"labels":[],"label_agreement":null},{"id":"W2015681476","doi":"10.1039/c1mb05099k","title":"Bromodomain-peptide displacement assays for interactome mapping and inhibitor discovery","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein Degradation and Inhibitors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research; Wellcome Trust","keywords":"Bromodomain; Interactome; Druggability; Histone; Acetylation; Computational biology; Biology; Histone code; Drug discovery; Epigenetics; Chromatin; Small molecule; BRD4; Chromatin immunoprecipitation; Biochemistry; Chemistry; Nucleosome; Gene; Gene expression; Promoter","score_opus":0.018498129069197483,"score_gpt":0.23069388286861384,"score_spread":0.21219575379941635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015681476","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92912555,0.0007134369,0.06717922,0.0000803563,0.000453076,0.0008163423,0.000056232617,0.000025101574,0.0015507052],"genre_scores_gemma":[0.99625236,0.000022482622,0.002024691,0.00023365254,0.00019404193,0.00014859442,0.00015279856,0.00003835904,0.0009330114],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876934,0.00007419667,0.00030727164,0.00043939977,0.0001383734,0.00027142148],"domain_scores_gemma":[0.9993561,0.000008666242,0.00012649722,0.00033917316,0.00006220009,0.00010735615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025078,0.00021128054,0.00018054954,0.00007556562,0.000082707505,0.000072757415,0.0001464343,0.00013121041,0.000008226109],"category_scores_gemma":[0.00007458292,0.00019534439,0.00012258615,0.00006962078,0.00006086248,0.000015486092,0.0001381264,0.00006095519,0.0000068589175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079085876,0.000052052063,0.0007198808,0.00008448551,0.00007395824,0.0000057502775,0.00009390578,4.8760626e-7,0.99613744,0.0008495198,0.0015727814,0.0003306656],"study_design_scores_gemma":[0.0008185035,0.00034230293,0.00032465637,0.00009772143,0.000017323702,0.000026924024,0.00021903907,0.00006594054,0.95782584,0.000094050774,0.039858576,0.00030911015],"about_ca_topic_score_codex":0.000032214924,"about_ca_topic_score_gemma":0.000011530821,"teacher_disagreement_score":0.06712684,"about_ca_system_score_codex":0.000026071935,"about_ca_system_score_gemma":0.00003304325,"threshold_uncertainty_score":0.7965913},"labels":[],"label_agreement":null},{"id":"W2015714531","doi":"10.1039/b907407d","title":"Systems-level approaches for identifying and analyzing genetic interaction networks in <i>Escherichia coli</i> and extensions to other prokaryotes","year":2009,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Escherichia coli; Computational biology; Biology; Computer science; Genetics; Evolutionary biology; Gene","score_opus":0.06542478450936108,"score_gpt":0.3002665201222121,"score_spread":0.23484173561285104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015714531","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015854166,0.905934,0.08941275,0.000015541407,0.00029642184,0.0026254882,0.00005828469,0.0000128099255,0.000059317914],"genre_scores_gemma":[0.03636042,0.95685476,0.00463513,0.00023033583,0.0005393481,0.0007082002,0.000346075,0.000163096,0.00016264],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977373,0.00017748418,0.000851475,0.00069148303,0.00010801667,0.000434237],"domain_scores_gemma":[0.99893045,0.00003415256,0.00037127134,0.00044579993,0.000048341495,0.00016999725],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00048182972,0.00050601375,0.0010383272,0.00020492006,0.00010469218,0.0002348923,0.00020264804,0.0005787864,4.668696e-7],"category_scores_gemma":[0.00003381506,0.00045836612,0.00020677377,0.00023586192,0.000036330563,0.000007429001,0.00016985723,0.00023093661,0.000001521657],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008148732,0.00011422182,0.000050529303,0.023086349,0.00085814856,0.00002547716,0.00020907175,0.0032830192,0.004819759,0.0004654216,0.0011245245,0.965882],"study_design_scores_gemma":[0.000851451,0.00046703164,0.00004587531,0.016474782,0.0008062536,0.00028045825,0.0002736784,0.024155268,0.00013725538,0.00004364288,0.95472133,0.0017429849],"about_ca_topic_score_codex":0.00004381844,"about_ca_topic_score_gemma":0.000054080552,"teacher_disagreement_score":0.964139,"about_ca_system_score_codex":0.000043186625,"about_ca_system_score_gemma":0.000065045526,"threshold_uncertainty_score":0.9997868},"labels":[],"label_agreement":null},{"id":"W2016589057","doi":"10.1039/c2mb25398d","title":"Effect of IR laser on myoblasts: a proteomic study","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Laser Applications in Dentistry and Medicine","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"Ente Cassa di Risparmio di Firenze; Fondazione Cassa di Risparmio di Pistoia e Pescia","keywords":"MyoD; C2C12; Myocyte; Cytoskeleton; Cell biology; Proteome; Cell; Biology; Cell growth; Cellular differentiation; Proteomics; MyoD Protein; Bioinformatics; Biochemistry; Myogenesis; Gene","score_opus":0.004320879035022228,"score_gpt":0.2723541841729331,"score_spread":0.2680333051379109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016589057","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926669,0.00004836046,0.00012390208,0.00024832544,0.00013967659,0.0048650536,0.0000044890294,0.000053999975,0.0018492939],"genre_scores_gemma":[0.9979134,0.0000011926301,0.000039100298,0.00015010801,0.000089133224,0.0009100892,0.000015257204,0.000023697483,0.0008580275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987536,0.00015433058,0.00031137397,0.00026896488,0.00034466604,0.00016705663],"domain_scores_gemma":[0.998962,0.000043912998,0.000100525,0.00066035555,0.00011656706,0.000116643554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035689448,0.000159995,0.00037395148,0.00010002848,0.000029626028,0.0000104035935,0.000115873125,0.00007290783,0.00012079775],"category_scores_gemma":[0.00012707467,0.0001093647,0.00008718803,0.00023024123,0.000044924785,0.000022791066,0.000032224954,0.00013334252,0.00038741896],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026260075,0.0007294945,0.015129847,0.00088663946,0.00024516918,0.00014504108,0.00018930413,0.000005389248,0.977086,0.00004382988,0.0031594275,0.0021172317],"study_design_scores_gemma":[0.003934923,0.006520143,0.0066343783,0.00041485723,0.0001910028,0.00008318818,0.00019606414,0.00009387411,0.9811279,0.000006595514,0.00067948963,0.000117553835],"about_ca_topic_score_codex":0.00009163774,"about_ca_topic_score_gemma":9.276131e-7,"teacher_disagreement_score":0.008495469,"about_ca_system_score_codex":0.000042516967,"about_ca_system_score_gemma":0.000025276713,"threshold_uncertainty_score":0.4979616},"labels":[],"label_agreement":null},{"id":"W2018903836","doi":"10.1039/c2mb05475b","title":"Simultaneous analysis of cardiolipin and lipid A from <i>Helicobacter</i> <i>pylori</i> by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"China Scholarship Council","keywords":"Cardiolipin; Bacterial outer membrane; Chemistry; Myristic acid; Helicobacter pylori; Biochemistry; Ex vivo; Bacteria; In vivo; Biology; In vitro; Microbiology; Fatty acid; Membrane; Palmitic acid; Phospholipid; Escherichia coli","score_opus":0.006114637119449795,"score_gpt":0.2285104518988457,"score_spread":0.2223958147793959,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018903836","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872751,0.003389259,0.007672686,0.00022455891,0.0002656526,0.00045568484,0.00051615754,0.00007250807,0.00012837112],"genre_scores_gemma":[0.9972268,0.00016446027,0.0011332047,0.00018467233,0.00015984166,0.000018526283,0.0009248201,0.000050130355,0.00013758613],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975266,0.00029077407,0.0008288028,0.00043156542,0.00045475902,0.0004674835],"domain_scores_gemma":[0.99825966,0.00015630214,0.00044486494,0.0005751363,0.000318456,0.0002455572],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003116286,0.00034585502,0.0012609985,0.00055417715,0.00005650918,0.000017330904,0.00012661776,0.00029459162,0.000050252267],"category_scores_gemma":[0.00018256245,0.00031444815,0.00030437,0.0016017532,0.00013398564,0.00009111769,0.00008004843,0.00019498158,0.000027000655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016895522,0.00015492168,0.21246968,0.000091483445,0.0060359826,0.000020429605,0.00022815577,0.000044527023,0.7804426,0.0000036297913,0.00025734847,0.00008225882],"study_design_scores_gemma":[0.0065288297,0.0012448782,0.12401874,0.000556806,0.024801541,0.00018642517,0.00050830975,0.004603584,0.83120155,0.000004645522,0.0053799837,0.0009646994],"about_ca_topic_score_codex":0.00016361946,"about_ca_topic_score_gemma":0.000007896761,"teacher_disagreement_score":0.088450946,"about_ca_system_score_codex":0.00011699123,"about_ca_system_score_gemma":0.000025885818,"threshold_uncertainty_score":0.99993074},"labels":[],"label_agreement":null},{"id":"W2023796415","doi":"10.1039/c4mb00097h","title":"Comparing systemic metabolic responses in mice to single or dual infection with <i>Plasmodium berghei</i> and <i>Heligmosomoides bakeri</i>","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Malaria Research and Control","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Ste. Anne's Hospital","funders":"Wellcome Trust","keywords":"Plasmodium berghei; Biology; Phenotype; Malaria; Parasite hosting; Virology; Immunology; Genetics; Gene","score_opus":0.015462544828967325,"score_gpt":0.2494756345625025,"score_spread":0.23401308973353516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023796415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933392,0.0009115118,0.0027583977,0.00089514325,0.000106571,0.0011526315,0.0000062001304,0.00008239301,0.00074798596],"genre_scores_gemma":[0.99862283,0.000023290873,0.0002618694,0.0004776102,0.000111001464,0.00015000558,0.000008409322,0.000041221523,0.00030373232],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978503,0.00046676473,0.00037062372,0.00043943213,0.00042233904,0.0004505644],"domain_scores_gemma":[0.99900854,0.0001240734,0.00008565861,0.00033513719,0.00012826754,0.00031830725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008010823,0.00024031407,0.0006224345,0.00032092776,0.00007092032,0.00010538709,0.000075595584,0.00010747666,0.000006215977],"category_scores_gemma":[0.000255998,0.0001760104,0.00005191435,0.00041597497,0.000045511944,0.000073481395,0.00006678384,0.00019508543,0.00003362908],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031129594,0.000110759196,0.028588403,0.00046105293,0.00009928919,0.00021669442,0.00013102562,0.0000683805,0.9661329,0.0006377627,0.0000793082,0.00036151364],"study_design_scores_gemma":[0.01940829,0.0064135347,0.06453541,0.0046518515,0.0004644756,0.006484869,0.0005402968,0.007304024,0.864349,0.000021016824,0.024529431,0.0012977693],"about_ca_topic_score_codex":0.0010581462,"about_ca_topic_score_gemma":0.0009174341,"teacher_disagreement_score":0.10178382,"about_ca_system_score_codex":0.00006976751,"about_ca_system_score_gemma":0.00010055952,"threshold_uncertainty_score":0.7177496},"labels":[],"label_agreement":null},{"id":"W2024240602","doi":"10.1039/c2mb25520k","title":"Synthesis of peptide-conjugated light-driven molecular motors and evaluation of their DNA-binding properties","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Supramolecular Chemistry and Complexes","field":"Chemistry","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; Astellas Foundation for Research on Metabolic Disorders; University of British Columbia","keywords":"Conjugated system; Molecular motor; DNA; Peptide; Molecular machine; Chemistry; Combinatorial chemistry; Nanotechnology; Biophysics; Materials science; Biochemistry; Biology; Polymer; Organic chemistry","score_opus":0.01838284136251615,"score_gpt":0.2161770320289822,"score_spread":0.19779419066646606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024240602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934272,0.0010394796,0.000035906003,0.0000682686,0.000039469687,0.0003941781,0.000026281654,0.000055504144,0.004913669],"genre_scores_gemma":[0.99950635,0.000008651236,0.00011643387,0.000010386806,0.00002295088,0.00020712739,0.000022466467,0.000048571852,0.000057081277],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978635,0.00016603865,0.00060817366,0.00042450777,0.00065087184,0.00028690867],"domain_scores_gemma":[0.99842304,0.00004772918,0.00036538948,0.000620791,0.0004341441,0.00010889848],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035026734,0.0003145579,0.0004927012,0.00009525594,0.000061975945,0.000054402728,0.0003176515,0.00021300568,0.00023027339],"category_scores_gemma":[0.0002234509,0.00027068457,0.00019038493,0.00018971057,0.0001255052,0.00009850942,0.000118395306,0.00011561108,0.000012456099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014690706,0.000071989816,0.00059925596,0.00078427506,0.00027032616,0.0000064345345,0.00025644279,0.00003726559,0.9972395,0.000059354417,0.000025170784,0.0006353482],"study_design_scores_gemma":[0.00041091305,0.000023713228,0.000045406097,0.0006376379,0.00018035878,0.000026282542,0.0010392454,0.0040923296,0.9931112,0.00008539393,0.000063472435,0.00028406933],"about_ca_topic_score_codex":0.0001331517,"about_ca_topic_score_gemma":0.000001807037,"teacher_disagreement_score":0.006079087,"about_ca_system_score_codex":0.00005782679,"about_ca_system_score_gemma":0.00007709012,"threshold_uncertainty_score":0.99997455},"labels":[],"label_agreement":null},{"id":"W2024629794","doi":"10.1039/c4mb00723a","title":"Insight into the key interactions of bromodomain inhibitors based on molecular docking, interaction fingerprinting, molecular dynamics and binding free energy calculation","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein Degradation and Inhibitors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Biotech (Canada); University of British Columbia","funders":"","keywords":"Bromodomain; Docking (animal); Molecular dynamics; Chemistry; Computational biology; Binding site; Computational chemistry; Biochemistry; Biology; Epigenetics; Medicine; Gene","score_opus":0.00844817812379396,"score_gpt":0.23793308332273175,"score_spread":0.2294849051989378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024629794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9247834,0.0005263945,0.07088465,0.0006774125,0.00064164284,0.00039595243,0.00001650914,0.000039711995,0.0020343408],"genre_scores_gemma":[0.99835116,0.000010382962,0.0006725298,0.00037746207,0.0001109444,0.000063887266,0.000266582,0.00006375851,0.00008328543],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976226,0.00043498538,0.00058735284,0.0005756609,0.0004966431,0.0002827595],"domain_scores_gemma":[0.99823105,0.000033473163,0.00043265134,0.00087266974,0.00025749652,0.0001726307],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004982296,0.00034679743,0.0002764605,0.0002992722,0.0001411483,0.00010676148,0.00034646134,0.00023758826,0.0000047218577],"category_scores_gemma":[0.00048052365,0.00030258397,0.00019931681,0.0003592977,0.00012957746,0.000024581901,0.00024856592,0.00021618544,0.0000040862196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000093752584,0.000094699826,0.0005145742,0.000045691966,0.00009448866,0.000021046579,0.00030380604,0.00511382,0.987509,0.0043034744,0.00028182956,0.0016237997],"study_design_scores_gemma":[0.0008688486,0.00031384168,0.000039903538,0.00020654025,0.000044177243,0.000026819562,0.00021902776,0.045358814,0.93956786,0.0001498662,0.012852641,0.00035167334],"about_ca_topic_score_codex":0.0004257809,"about_ca_topic_score_gemma":0.00016979223,"teacher_disagreement_score":0.073567785,"about_ca_system_score_codex":0.00018432461,"about_ca_system_score_gemma":0.00014468074,"threshold_uncertainty_score":0.9999426},"labels":[],"label_agreement":null},{"id":"W2027139914","doi":"10.1039/b607001a","title":"Progress towards the easier use of P450 enzymes","year":2006,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Pharmacogenetics and Drug Metabolism","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Merck Canada; Centre National de la Recherche Scientifique","keywords":"Cytochrome P450; Cofactor; Enzyme; Substrate (aquarium); Chemistry; Protein engineering; Biochemistry; Heme; Mutagenesis; Hydroxylation; Hemeprotein; Combinatorial chemistry; Biology; Gene; Mutation","score_opus":0.28224781355110473,"score_gpt":0.4799072877840047,"score_spread":0.19765947423289998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027139914","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022182985,0.9929718,0.000115907555,0.000085619664,0.0022816774,0.00216284,0.0007672404,0.0000695401,0.0013235873],"genre_scores_gemma":[0.0040717456,0.9932434,0.00008655282,0.0002861519,0.00052132696,0.00040969398,0.00021037598,0.00013824622,0.0010324921],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99458134,0.002367977,0.0012904507,0.0006080717,0.00047303046,0.0006791187],"domain_scores_gemma":[0.99755234,0.00026270733,0.00094573345,0.0008072743,0.00020533141,0.00022661993],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010602331,0.0007628241,0.0019450415,0.00024942073,0.000173212,0.00007650179,0.0010231279,0.0009882667,0.00015006041],"category_scores_gemma":[0.000049567927,0.0004962416,0.0010974702,0.00060624356,0.000533704,0.00005047577,0.00029705695,0.0010661198,0.0001039274],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017781336,0.00023869102,0.00001236216,0.00880614,0.001220726,0.00015008078,0.0000630255,0.000033260763,0.0005780161,0.0013801965,0.008645441,0.9788543],"study_design_scores_gemma":[0.00036518578,0.000033161567,0.0000040048485,0.0010409342,0.0029627602,0.00009029163,0.000007677896,0.00009977546,0.0056393216,0.000019262576,0.9892338,0.00050385075],"about_ca_topic_score_codex":0.00008429016,"about_ca_topic_score_gemma":0.0000047062053,"teacher_disagreement_score":0.9805883,"about_ca_system_score_codex":0.000069254056,"about_ca_system_score_gemma":0.00039730925,"threshold_uncertainty_score":0.99974895},"labels":[],"label_agreement":null},{"id":"W2028707451","doi":"10.1039/b919263h","title":"Beyond the bounds of orthology: functional inference from metagenomic context","year":2010,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metagenomics; Context (archaeology); Inference; Biology; Computational biology; Genome; Construct (python library); Functional genomics; Function (biology); Set (abstract data type); Genomics; Computer science; Evolutionary biology; Genetics; Gene; Artificial intelligence","score_opus":0.006815776979720863,"score_gpt":0.21523128108798148,"score_spread":0.20841550410826062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028707451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98599863,0.0011439224,0.009166893,0.00019965816,0.0010452952,0.0002238005,0.00009485159,0.000008913204,0.0021180313],"genre_scores_gemma":[0.9981845,0.000017973407,0.00037469136,0.0006602715,0.0002623567,0.00002077241,0.00025681022,0.000019201432,0.00020343719],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896824,0.00006387185,0.00037020908,0.00024486674,0.00014340828,0.00020938752],"domain_scores_gemma":[0.99894065,0.000028516959,0.00020831119,0.0006546075,0.000102942446,0.00006499428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031922973,0.00017140941,0.00020412896,0.0000316511,0.00009324494,0.00003912065,0.0003334845,0.00024929788,0.00007408692],"category_scores_gemma":[0.000046766978,0.00012571487,0.00015271961,0.00007397558,0.00020680769,0.0000034104012,0.0001508256,0.00020984595,0.00002919156],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029284189,0.000020319809,0.0008395816,0.000009137046,0.00014773686,0.000001997137,0.0000665212,0.000032251046,0.9922853,0.0037479606,0.0013273295,0.0014925962],"study_design_scores_gemma":[0.0014439085,0.0003114084,0.0062454697,0.000021903945,0.00015631804,0.00006276681,0.00048649867,0.0011541405,0.86255497,0.0034271087,0.12349238,0.00064313447],"about_ca_topic_score_codex":0.000116661206,"about_ca_topic_score_gemma":0.0002782746,"teacher_disagreement_score":0.12973033,"about_ca_system_score_codex":0.000005352446,"about_ca_system_score_gemma":0.00009704738,"threshold_uncertainty_score":0.5126504},"labels":[],"label_agreement":null},{"id":"W2028795514","doi":"10.1039/c5mb00030k","title":"Molecular effects of supraphysiological doses of doping agents on health","year":2015,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Hormonal and reproductive studies","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"World Anti-Doping Agency; Università degli Studi di Napoli Federico II","keywords":"Anabolic-Androgenic Steroids; Testosterone (patch); Hormone; Anabolism; Dihydrotestosterone; Adverse effect; Growth hormone; Population; Endocrinology; Medicine; Bioinformatics; Internal medicine; Pharmacology; Biology; Androgen","score_opus":0.07294993594958023,"score_gpt":0.39440193865964684,"score_spread":0.32145200271006663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028795514","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0052499576,0.99155736,0.000021433993,0.000061884646,0.00034944635,0.0021994838,0.00003170533,0.000028656796,0.0005000826],"genre_scores_gemma":[0.06272118,0.93679965,0.00005309128,0.00006041626,0.00012518714,0.000077112076,0.00008292993,0.000052093674,0.00002834865],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970437,0.00048427438,0.0009006825,0.0006177963,0.00063921855,0.0003142952],"domain_scores_gemma":[0.9981103,0.0000732571,0.0007341279,0.0006693502,0.00024067643,0.00017228209],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042538557,0.00046909775,0.0038940043,0.0002669435,0.000033008422,0.000003867845,0.00018383095,0.00025048896,0.000001933653],"category_scores_gemma":[0.0002458945,0.00028559298,0.0009090732,0.0004460303,0.00015543032,0.000009475249,0.00012951645,0.00028281508,0.000014885304],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013925818,0.001196717,0.000027033806,0.5553857,0.004918012,0.0008852737,0.00026882088,0.000005406628,0.017783789,0.0010518612,0.0013117847,0.41702634],"study_design_scores_gemma":[0.0017661498,0.008130791,0.00013691698,0.18586738,0.0024112046,0.00016118308,0.00014375453,0.0000023088335,0.023540784,0.00008460114,0.7768405,0.00091444387],"about_ca_topic_score_codex":0.000051741285,"about_ca_topic_score_gemma":3.2210406e-7,"teacher_disagreement_score":0.77552867,"about_ca_system_score_codex":0.00010854485,"about_ca_system_score_gemma":0.00029563005,"threshold_uncertainty_score":0.99995965},"labels":[],"label_agreement":null},{"id":"W2035442778","doi":"10.1039/c3mb70501c","title":"A global investigation of gene deletion strains that affect premature stop codon bypass in yeast, <i>Saccharomyces cerevisiae</i>","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; University of Regina; Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Saccharomyces cerevisiae; Yeast; Affect (linguistics); Gene; Biology; Genetics; Saccharomyces; Stop codon; Psychology; Communication","score_opus":0.009531350702257526,"score_gpt":0.22516836820740993,"score_spread":0.2156370175051524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035442778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98147386,0.0014857546,0.015589018,0.00011529247,0.00016655025,0.000601713,0.00006396716,0.000019951693,0.00048388686],"genre_scores_gemma":[0.9982372,0.00003732007,0.0012283594,0.00012983668,0.00011071224,0.000051336367,0.0001516255,0.000027189182,0.000026407317],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99821734,0.00046739052,0.0003225765,0.00044180124,0.0002881422,0.00026276353],"domain_scores_gemma":[0.99912286,0.000008216499,0.00024440457,0.00046274962,0.0000672661,0.000094506126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005787341,0.00023863431,0.00031040833,0.000060103313,0.00003569742,0.000033539203,0.0002576949,0.00032755441,0.000005906041],"category_scores_gemma":[0.000074284544,0.00022706063,0.0001367069,0.0001923448,0.000048773683,0.000007708071,0.00005276553,0.00006431515,0.000005442295],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003562328,0.000023214461,0.0034282783,0.000184814,0.000038742044,0.0000042985216,0.00003529775,0.0000660937,0.9948179,0.00045380308,0.00011046764,0.0008014304],"study_design_scores_gemma":[0.0005171032,0.00025799702,0.0028815342,0.00021292594,0.000024667203,0.00002941169,0.000052707688,0.000122964,0.9946038,0.00018606978,0.00087079016,0.00024002315],"about_ca_topic_score_codex":0.000080869824,"about_ca_topic_score_gemma":0.000080615086,"teacher_disagreement_score":0.016763348,"about_ca_system_score_codex":0.00003158427,"about_ca_system_score_gemma":0.000051511688,"threshold_uncertainty_score":0.9259264},"labels":[],"label_agreement":null},{"id":"W2035679045","doi":"10.1039/c4mb00320a","title":"A copper-responsive gene cluster is required for copper homeostasis and contributes to oxidative resistance in <i>Deinococcus radiodurans</i> R1","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Trace Elements in Health","field":"Nursing","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Deinococcus radiodurans; Copper; Gene; Oxidative phosphorylation; Homeostasis; Biology; Gene cluster; Cluster (spacecraft); Cell biology; Resistance (ecology); Genetics; Chemistry; Biochemistry; Ecology","score_opus":0.012096640304271112,"score_gpt":0.2814827154803802,"score_spread":0.2693860751761091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035679045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.955386,0.006799755,0.008777528,0.022052735,0.0010569529,0.0050183325,0.0006565034,0.000097955715,0.0001542618],"genre_scores_gemma":[0.98714423,0.000021809694,0.0044259294,0.007586479,0.00009754698,0.0004993971,0.000042942713,0.00007304794,0.00010860671],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.996583,0.00068215333,0.000744098,0.00085285393,0.00034606984,0.0007918109],"domain_scores_gemma":[0.9980876,0.0005445763,0.0002137483,0.000661051,0.00026398324,0.00022907784],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012226205,0.00037185056,0.00069470465,0.00033463252,0.00020096268,0.00012238057,0.00027652527,0.00021683057,0.00000393725],"category_scores_gemma":[0.0007052205,0.00037637955,0.000105184015,0.0005003267,0.00009700766,0.00011425218,0.000068280075,0.00016189982,0.000020003668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0063118413,0.0001756791,0.0038091345,0.0010377283,0.00020024256,0.000032486645,0.0057069142,0.000037501602,0.9215264,0.001023192,0.055525716,0.004613168],"study_design_scores_gemma":[0.007701733,0.000772054,0.0023336394,0.0008689919,0.00009876078,0.0000131191,0.0005935927,0.00030065927,0.7878182,0.00036933893,0.1984044,0.00072549324],"about_ca_topic_score_codex":0.0001719481,"about_ca_topic_score_gemma":0.0006815311,"teacher_disagreement_score":0.14287868,"about_ca_system_score_codex":0.00041171,"about_ca_system_score_gemma":0.000051444065,"threshold_uncertainty_score":0.9998688},"labels":[],"label_agreement":null},{"id":"W2036408874","doi":"10.1039/c3mb70231f","title":"Binding structures and energies of the human neonatal Fc receptor with human Fc and its mutants by molecular modeling and dynamics simulations","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute on Drug Abuse; University of Windsor; National Institutes of Health; University of Kentucky","keywords":"Neonatal Fc receptor; Mutant; Fragment crystallizable region; Homology modeling; Binding site; Plasma protein binding; Biophysics; Receptor; Molecular dynamics; Chemistry; Human proteins; Protein structure; Antibody; Biology; Immunoglobulin G; Biochemistry; Genetics; Gene; Enzyme; Computational chemistry","score_opus":0.011048280868550106,"score_gpt":0.266425648006049,"score_spread":0.2553773671374989,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036408874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961422,0.0025898528,0.00013046231,0.0003176669,0.000024334078,0.0005249618,0.0001662598,0.000014992704,0.00008926554],"genre_scores_gemma":[0.99938905,0.00003741894,0.0001366221,0.000043766824,0.000020770141,0.000010152178,0.000101104764,0.000027899341,0.00023321959],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99881,0.00007219491,0.00024458487,0.00028192572,0.00036226786,0.00022904995],"domain_scores_gemma":[0.9994489,0.000025108788,0.00008148925,0.00018761025,0.00012582903,0.00013108719],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000788739,0.00018877385,0.00027995085,0.00009589645,0.00025142136,0.00006222532,0.00009251079,0.000094309646,0.000020411702],"category_scores_gemma":[0.00002112655,0.00012069796,0.000038219052,0.00013410657,0.00014973799,0.00006479009,0.00013734013,0.00016060976,9.559964e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027586799,0.0000136313265,0.0056482838,0.0002980382,0.00011762543,0.000012435264,0.00019002952,0.00029406536,0.9912315,0.0019048917,0.000020023988,0.00024188538],"study_design_scores_gemma":[0.0033524344,0.0012978567,0.004329009,0.0013136598,0.00027054202,0.00044532298,0.0016826494,0.3398305,0.64554805,0.00070049166,0.00036342256,0.000866089],"about_ca_topic_score_codex":0.0005009531,"about_ca_topic_score_gemma":0.00006930786,"teacher_disagreement_score":0.34568346,"about_ca_system_score_codex":0.000022797154,"about_ca_system_score_gemma":0.000021317717,"threshold_uncertainty_score":0.49219197},"labels":[],"label_agreement":null},{"id":"W2038561646","doi":"10.1039/c3mb70402e","title":"Optimization of a genetically encoded biosensor for cyclin B1-cyclin dependent kinase 1","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Centers for Disease Control and Prevention","keywords":"Biosensor; Kinase; Cyclin-dependent kinase 1; Biology; Cell biology; Biochemistry; Cell cycle; Cell","score_opus":0.006007499991399431,"score_gpt":0.24378804949652422,"score_spread":0.23778054950512478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038561646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.62535626,0.00073573145,0.3716048,0.000106688,0.000050523326,0.0013463064,0.00002429624,0.000043481,0.0007319103],"genre_scores_gemma":[0.9597815,0.0000893801,0.038912352,0.00017730595,0.00009143856,0.00026915877,0.00028351846,0.00005699552,0.00033834667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99816954,0.00013289767,0.00060456165,0.00054798665,0.00023344831,0.00031158683],"domain_scores_gemma":[0.9984258,0.000019132747,0.00025454233,0.0007561594,0.00042512544,0.00011926648],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028005257,0.00024832375,0.0003345525,0.0001288354,0.000047648486,0.00005230122,0.00031626297,0.00026658806,0.00003807887],"category_scores_gemma":[0.00020459837,0.00024143285,0.000295228,0.00015692879,0.000077178585,0.0000059583704,0.00011769159,0.00006019461,0.000013914554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029259681,0.00011370987,0.0001634249,0.00007605599,0.00011945172,0.0000041667213,0.000010835149,0.0014092502,0.9963195,0.00004237699,0.0009786268,0.00073334115],"study_design_scores_gemma":[0.0005436514,0.00030460005,0.00003179907,0.000029807394,0.00008068316,0.000009611242,0.00003723461,0.009478969,0.9879568,0.00004271365,0.0012115984,0.0002725084],"about_ca_topic_score_codex":0.00011816104,"about_ca_topic_score_gemma":0.00002104129,"teacher_disagreement_score":0.33442524,"about_ca_system_score_codex":0.000020787567,"about_ca_system_score_gemma":0.000050882118,"threshold_uncertainty_score":0.9845346},"labels":[],"label_agreement":null},{"id":"W2043856061","doi":"10.1039/b801724g","title":"Linking the kinome and phosphorylome—a comprehensive review of approaches to find kinase targets","year":2008,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research; National Cancer Institute; Genome Canada","keywords":"Kinome; Kinase; Phosphorylation; Biology; Computational biology; Protein phosphorylation; Cell biology; Protein kinase A","score_opus":0.08146808433639019,"score_gpt":0.3015082796342897,"score_spread":0.22004019529789953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043856061","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000029563418,0.99560755,0.001530453,0.00008496637,0.000025603651,0.0018573771,0.00017883972,0.000056713532,0.0006289051],"genre_scores_gemma":[0.000083942396,0.9943893,0.003796241,0.00012887381,0.000067522466,0.0011460318,0.00020709599,0.00008187937,0.00009908905],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980369,0.000073980525,0.0008176711,0.00057127385,0.00024244213,0.00025773072],"domain_scores_gemma":[0.99798274,0.000088730485,0.00065462885,0.0010836297,0.000082175655,0.00010809192],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001259761,0.00046544013,0.0015062247,0.00006413326,0.00012400965,0.00002242219,0.0005623634,0.0002820317,0.00001564699],"category_scores_gemma":[0.000032955973,0.00033289503,0.00042251358,0.00033171364,0.0001001109,0.000017615352,0.0002904658,0.00039772558,0.000011877211],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000031480674,0.00006542574,0.0000014545692,0.4817858,0.00025904312,0.00004284423,0.00007283498,0.0000026086693,0.0042672497,0.001663461,0.00058819493,0.51124793],"study_design_scores_gemma":[0.000042110787,0.000011773975,7.7451894e-8,0.08239851,0.00016960605,0.00013064817,0.00000772173,0.0000039195916,0.004860024,0.000044805496,0.91200995,0.00032086894],"about_ca_topic_score_codex":0.00001464301,"about_ca_topic_score_gemma":2.6486472e-7,"teacher_disagreement_score":0.9114217,"about_ca_system_score_codex":0.00007168429,"about_ca_system_score_gemma":0.000087219916,"threshold_uncertainty_score":0.9999123},"labels":[],"label_agreement":null},{"id":"W2043928697","doi":"10.1039/c4mb00406j","title":"Systems biosynthesis of secondary metabolic pathways within the oral human microbiome member <i>Streptococcus mutans</i>","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Population Health Research Institute; McMaster University","funders":"Royal Society of Chemistry; Canadian Institutes of Health Research; Royal Society","keywords":"Streptococcus mutans; Microbiome; Biosynthesis; Metabolic pathway; Oral Microbiome; Microbiology; Biology; Human microbiome; Metabolic activity; Computational biology; Chemistry; Genetics; Bacteria; Gene; Physiology","score_opus":0.01912830468051874,"score_gpt":0.26487327851616893,"score_spread":0.2457449738356502,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043928697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98921716,0.0032342665,0.00016468675,0.00007097392,0.0013860429,0.00093953,0.00058762945,0.00010515237,0.0042945296],"genre_scores_gemma":[0.9985007,0.0000066043485,0.000036218506,0.000107833286,0.00015959976,0.00009295222,0.000115770024,0.0000709762,0.0009093576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99594164,0.0015807224,0.00093039335,0.00061891717,0.00034792384,0.0005804339],"domain_scores_gemma":[0.9977843,0.00012658737,0.00044228192,0.0012327308,0.00027514348,0.00013894656],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017252562,0.00040268883,0.00084474764,0.00021573404,0.00033752405,0.0001884965,0.00095652934,0.00041400277,0.00033830781],"category_scores_gemma":[0.0001232364,0.00028588073,0.00033206682,0.000595706,0.0004562394,0.00009977381,0.00023892432,0.0004526051,0.00048609835],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022222373,0.000072661125,0.0036305776,0.00030459138,0.00029579914,0.0000760633,0.00015102433,0.000012926082,0.9893714,0.0042989324,0.0015625582,0.00020122471],"study_design_scores_gemma":[0.00078562443,0.00012586272,0.0018008326,0.00018326218,0.00010397935,0.00032710034,0.0003228699,0.00005551864,0.9544518,0.00005149059,0.0413722,0.00041945223],"about_ca_topic_score_codex":0.001292715,"about_ca_topic_score_gemma":0.00034480882,"teacher_disagreement_score":0.03980964,"about_ca_system_score_codex":0.00003925932,"about_ca_system_score_gemma":0.00010202744,"threshold_uncertainty_score":0.99995935},"labels":[],"label_agreement":null},{"id":"W2047527111","doi":"10.1039/b924668c","title":"Host–virus interactions during hepatitis C virus infection: a complex and dynamic molecular biosystem","year":2010,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Hepatitis C virus research","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Steacie Institute for Molecular Sciences; University of Ottawa","funders":"","keywords":"Host (biology); Virology; Virus; Biology; Hepatitis C virus; Hepatitis a virus; Genetics","score_opus":0.03774662950711532,"score_gpt":0.3695214754838532,"score_spread":0.3317748459767379,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047527111","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02797797,0.96255827,0.00044483473,0.00010012737,0.0011396101,0.0046464824,0.0006799805,0.0003849457,0.0020677578],"genre_scores_gemma":[0.043032628,0.95420647,0.00023267296,0.00006668993,0.00025386896,0.0007644149,0.00058164855,0.00036525115,0.0004963639],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9940777,0.0009261458,0.0016038493,0.001387634,0.0010587262,0.0009459349],"domain_scores_gemma":[0.99644935,0.000120742625,0.0006453214,0.001679846,0.0003605946,0.0007441617],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00052920886,0.0011128698,0.0032141851,0.0014040252,0.0003340207,0.0003253638,0.000366853,0.0010088508,0.00030525573],"category_scores_gemma":[0.000296832,0.0010359094,0.0010417175,0.0011504153,0.00022596715,0.0001576467,0.00042907675,0.0020770577,0.0007057784],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061451836,0.0005213464,0.0008690772,0.1345646,0.0031635673,0.010197541,0.00015059831,8.526334e-7,0.40391767,0.00016110738,0.00041223114,0.44597995],"study_design_scores_gemma":[0.0007897988,0.00022800577,0.00022636844,0.021755451,0.0012551182,0.0043197367,0.000007121531,0.00018576469,0.0025703192,0.0000025384554,0.96766627,0.0009935035],"about_ca_topic_score_codex":0.0058488087,"about_ca_topic_score_gemma":0.003730638,"teacher_disagreement_score":0.96725404,"about_ca_system_score_codex":0.00080367026,"about_ca_system_score_gemma":0.0004986208,"threshold_uncertainty_score":0.9992091},"labels":[],"label_agreement":null},{"id":"W2048299923","doi":"10.1039/c4mb00410h","title":"Predicting protein–protein interactions between human and hepatitis C virus <i>via</i> an ensemble learning method","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Machine Learning in Bioinformatics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Hepatitis a virus; Ensemble learning; Hepatitis C virus; Computational biology; Virology; Computer science; Biology; Virus; Artificial intelligence; Chemistry","score_opus":0.007431449447555957,"score_gpt":0.2756071699961699,"score_spread":0.26817572054861394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048299923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7943755,0.00007253628,0.20271255,0.000047455367,0.0000618352,0.0004627018,0.000009768498,0.00008459792,0.0021731032],"genre_scores_gemma":[0.98617846,0.000004199059,0.012387197,0.00008404457,0.0003417637,0.000079800695,0.00037894046,0.00006741869,0.00047816703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977599,0.0006879479,0.0004781452,0.0004704778,0.00024254777,0.0003610044],"domain_scores_gemma":[0.99886954,0.00002195455,0.00030910192,0.00050955865,0.000101834215,0.00018801594],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008787833,0.00028986827,0.00029849328,0.00009905104,0.00036318868,0.00013294141,0.00023682375,0.00021948521,0.000008737464],"category_scores_gemma":[0.0002570886,0.0002985815,0.0000944164,0.00011516912,0.000055461638,0.000022472399,0.00020166233,0.0003880532,0.000011858295],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008053669,0.000021429663,0.021042595,0.00011872239,0.00006629221,0.000002452845,0.00012180535,0.00014209856,0.9740998,0.00023761543,0.000014810167,0.0041242866],"study_design_scores_gemma":[0.0005636671,0.0010607857,0.0015288744,0.00016567393,0.00005412735,0.00007147294,0.00006427491,0.01308042,0.9539601,0.0001296884,0.028770076,0.0005507979],"about_ca_topic_score_codex":0.0011390125,"about_ca_topic_score_gemma":0.0002654321,"teacher_disagreement_score":0.19180301,"about_ca_system_score_codex":0.000022032318,"about_ca_system_score_gemma":0.000019614929,"threshold_uncertainty_score":0.99994665},"labels":[],"label_agreement":null},{"id":"W2050585817","doi":"10.1039/b918205e","title":"<i>De</i>   <i>novo</i> helical peptides as target sequences for a specific, fluorogenic proteinlabelling strategy","year":2010,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Click Chemistry and Applications","field":"Chemistry","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Labelling; Computational biology; Peptide; Biology; Biochemistry; Chemistry","score_opus":0.011982525302983046,"score_gpt":0.258206096639866,"score_spread":0.24622357133688294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050585817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98609763,0.0006941112,0.0022364527,0.0003591127,0.000080431564,0.0005003218,0.00017250895,0.00020322338,0.009656228],"genre_scores_gemma":[0.9942756,0.000017451152,0.0031211933,0.000105632316,0.0005683092,0.0007677097,0.00015449454,0.000056992772,0.00093256164],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982187,0.000016551923,0.00042749583,0.00058073754,0.00025213757,0.00050438254],"domain_scores_gemma":[0.99874616,0.00007788182,0.00015651186,0.00065403205,0.00013385265,0.00023157857],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025187162,0.00028435362,0.0002718125,0.000023051842,0.00022107341,0.00020292879,0.00047156526,0.00031785222,0.00036442679],"category_scores_gemma":[0.000069294416,0.00028663373,0.00023085346,0.00015661014,0.00011178509,0.000058213132,0.000046923793,0.00037239213,0.00009024487],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020174102,0.000094610295,0.000085167965,0.00027183918,0.000041076048,0.000024969591,0.000039765848,0.000027634665,0.9943695,0.0043260218,0.0003543646,0.00034487335],"study_design_scores_gemma":[0.00034351178,0.000022237657,5.489676e-7,0.00005671718,0.000019686024,0.00019716799,0.00013962873,0.00028347495,0.87926066,0.0015819011,0.11778997,0.00030448785],"about_ca_topic_score_codex":0.000038659004,"about_ca_topic_score_gemma":0.000006404444,"teacher_disagreement_score":0.117435604,"about_ca_system_score_codex":0.00004217456,"about_ca_system_score_gemma":0.0001395621,"threshold_uncertainty_score":0.9999586},"labels":[],"label_agreement":null},{"id":"W2050761990","doi":"10.1039/c2mb25040c","title":"Genome-scale genetic manipulation methods for exploring bacterial molecular biology","year":2012,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genome; Gene; Computational biology; Bacteria; Bacterial genome size; Genetics; Escherichia coli; Microbial genetics","score_opus":0.07591542757599361,"score_gpt":0.35833537106992536,"score_spread":0.28241994349393174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050761990","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034865788,0.8840026,0.106892146,0.000015110682,0.0027207672,0.0024935405,0.00025325696,0.00006768857,0.00006830211],"genre_scores_gemma":[0.002309527,0.93243706,0.056058418,0.000041884734,0.0021308884,0.0019073011,0.0046384293,0.0003857498,0.000090723144],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9953664,0.0007853879,0.0012585747,0.0013927255,0.00013881137,0.0010580814],"domain_scores_gemma":[0.99737316,0.000032528846,0.00071047863,0.0014664205,0.00016281758,0.00025460953],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0006932736,0.0010134716,0.0018429415,0.0003338557,0.00013723515,0.000102266225,0.0008945767,0.0021679727,0.000030343503],"category_scores_gemma":[0.00007106411,0.000950208,0.0011193712,0.00030486623,0.00013558337,0.0000061807764,0.00053006684,0.00029003998,0.00003978252],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001902845,0.00004270034,0.0000016133329,0.0024213179,0.00034124716,0.0000032923272,0.0000063700713,0.0000015915766,0.67527723,0.00011974499,0.000007414145,0.32175842],"study_design_scores_gemma":[0.00037226352,0.00039899332,0.0000031748268,0.00038094583,0.0009336707,0.00011471982,0.0000060999178,0.000006353903,0.08650156,0.000057048142,0.91023815,0.000987039],"about_ca_topic_score_codex":0.00001515611,"about_ca_topic_score_gemma":0.000005899706,"teacher_disagreement_score":0.9102307,"about_ca_system_score_codex":0.000092210175,"about_ca_system_score_gemma":0.00019416353,"threshold_uncertainty_score":0.9992948},"labels":[],"label_agreement":null},{"id":"W2053391922","doi":"10.1039/b921106c","title":"Signal sequence as a determinant in expressing disulfide-stabilized single chain antibody variable fragments (sc-dsFv) against human VEGF","year":2010,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Defence Medical Centre","funders":"National Health Research Institutes; Genomics Research Center, Academia Sinica; National Science Council","keywords":"Phagemid; Phage display; Fusion protein; Peptide sequence; Biology; Molecular biology; Bacteriophage; Recombinant DNA; Biochemistry; Peptide; Gene","score_opus":0.024325596055543377,"score_gpt":0.3405825451078295,"score_spread":0.31625694905228613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053391922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99197733,0.00036442542,0.0003191637,0.00024660767,0.00028238675,0.00090489193,0.00002838429,0.00006897945,0.005807835],"genre_scores_gemma":[0.9970173,0.00001347695,0.0012271289,0.00030839106,0.00019130489,0.00006587218,0.00016998748,0.00006394601,0.00094259344],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99668604,0.00023087683,0.00068334234,0.0006983611,0.0008639954,0.00083738496],"domain_scores_gemma":[0.9986031,0.000081876184,0.00016577244,0.0006140998,0.00015143042,0.0003837397],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007422797,0.00037508988,0.000645966,0.00030401867,0.00022424423,0.0001289516,0.00034639266,0.0002674738,0.00020575844],"category_scores_gemma":[0.00016099802,0.00031371386,0.00017865119,0.00045545673,0.00021173924,0.00011569699,0.0002048715,0.0006992339,0.000081407634],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000171438,0.00041601504,0.009701813,0.00034543333,0.000042332984,0.0023476155,0.00027272358,0.0000075728235,0.9851282,0.00029801764,0.000020207844,0.0012486012],"study_design_scores_gemma":[0.0029550893,0.000716462,0.001961245,0.0015822788,0.000037636317,0.00048526382,0.0002421062,0.004424731,0.97966987,0.00027891333,0.007003449,0.00064295036],"about_ca_topic_score_codex":0.0013112567,"about_ca_topic_score_gemma":0.000081012186,"teacher_disagreement_score":0.007740568,"about_ca_system_score_codex":0.00011955681,"about_ca_system_score_gemma":0.00021737578,"threshold_uncertainty_score":0.9999315},"labels":[],"label_agreement":null},{"id":"W2054328264","doi":"10.1039/b814377c","title":"High throughput methods of assessing protein stability and aggregation","year":2008,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"Wellcome Trust","keywords":"Protein aggregation; Denaturation (fissile materials); Protein stability; Protein crystallization; Chemistry; Crystallization; Biophysics; Dynamic light scattering; Drug discovery; Chromatography; Biochemistry; Nanotechnology; Materials science; Biology; Organic chemistry; Nanoparticle","score_opus":0.046124193080817145,"score_gpt":0.3535256206516471,"score_spread":0.30740142757082994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054328264","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004794974,0.97524524,0.017937675,0.0000040228833,0.0006423024,0.00109122,0.00003480383,0.000052359454,0.00019743307],"genre_scores_gemma":[0.006646368,0.95186526,0.041024312,0.0000075168346,0.00018465647,0.00011658607,0.000069536516,0.00006173268,0.000024052471],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99693847,0.0012952621,0.0007458003,0.00053621776,0.00028933983,0.00019488689],"domain_scores_gemma":[0.9984733,0.00008048027,0.0007505108,0.0005326302,0.00010918035,0.000053937503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008059427,0.00032091216,0.001290663,0.00009972605,0.00009074876,0.00007898677,0.00016819286,0.00035698476,0.00004138367],"category_scores_gemma":[0.0001585655,0.00024293229,0.00020467896,0.0002642047,0.00012246263,0.00013263791,0.000083994535,0.00016061272,0.0000071638174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000037416955,0.000023878849,0.0000015800906,0.028236616,0.00005662224,0.000016401638,0.00008316974,6.128384e-7,0.4897881,0.00078955357,0.000026182048,0.48097354],"study_design_scores_gemma":[0.00021699962,0.00012044223,0.000002739524,0.013291284,0.00034987158,0.00023128926,0.000036566533,0.000010110214,0.70581436,0.00032034438,0.2789976,0.0006083943],"about_ca_topic_score_codex":0.00015922723,"about_ca_topic_score_gemma":0.0000034707282,"teacher_disagreement_score":0.48036516,"about_ca_system_score_codex":0.00008109419,"about_ca_system_score_gemma":0.00015656193,"threshold_uncertainty_score":0.99064916},"labels":[],"label_agreement":null},{"id":"W2055226297","doi":"10.1039/c2mb25102g","title":"More than just tails: intrinsic disorder in histone proteins","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Russian Academy of Sciences; Alberta Innovates","keywords":"Intrinsically disordered proteins; Histone; Biology; Computational biology; Nucleic acid; Non-histone protein; DNA; Cell biology; Genetics; Biochemistry","score_opus":0.006312572356138476,"score_gpt":0.2514933971748138,"score_spread":0.2451808248186753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055226297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98620164,0.006922867,0.004550884,0.00020329097,0.00036457911,0.0007638237,0.000021971278,0.000029312343,0.0009416108],"genre_scores_gemma":[0.99807835,0.000036742447,0.00064943027,0.00022453554,0.00034045175,0.0001372943,0.00015902006,0.00005196638,0.00032220723],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984458,0.000110381385,0.00031220305,0.0003770319,0.00021396556,0.0005406295],"domain_scores_gemma":[0.9990807,0.0000034165216,0.00010778643,0.00060654257,0.00005085423,0.00015069729],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023776115,0.00026953497,0.00025180503,0.00010534666,0.000057382298,0.000025276897,0.00026245508,0.00029558424,0.000010285477],"category_scores_gemma":[0.000063771244,0.00025118428,0.000119923185,0.00021148578,0.000078590856,0.000009061445,0.0001595517,0.00015558724,0.000023398921],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054568332,0.00012946506,0.025241703,0.000105766514,0.000052779935,0.000022966067,0.00020211012,0.000033688902,0.97126925,0.00078166026,0.00020682412,0.001899234],"study_design_scores_gemma":[0.00283347,0.0005113026,0.025544116,0.0001797617,0.00007569453,0.00025548987,0.0009988255,0.00021798557,0.8592384,0.00013860657,0.10829762,0.0017087237],"about_ca_topic_score_codex":0.0002415603,"about_ca_topic_score_gemma":0.00017300207,"teacher_disagreement_score":0.112030834,"about_ca_system_score_codex":0.0000535644,"about_ca_system_score_gemma":0.000054224685,"threshold_uncertainty_score":0.99999404},"labels":[],"label_agreement":null},{"id":"W2062364627","doi":"10.1039/c4mb00700j","title":"An integrated metabolomics approach for the research of new cerebrospinal fluid biomarkers of multiple sclerosis","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Multiple Sclerosis Research Studies","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Excellence in Mining Innovation","funders":"Ministero della Salute; Fondazione Italiana Sclerosi Multipla","keywords":"Multiple sclerosis; Metabolomics; Lipidomics; Cerebrospinal fluid; Disease; Biomarker discovery; Myelin; Medicine; Bioinformatics; Computational biology; Chemistry; Proteomics; Biology; Internal medicine; Immunology; Biochemistry; Central nervous system","score_opus":0.242831453175347,"score_gpt":0.3798221349857693,"score_spread":0.1369906818104223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062364627","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9174444,0.007739038,0.06754398,0.00070952426,0.00024777817,0.0055128084,0.00025857822,0.00006740632,0.00047645206],"genre_scores_gemma":[0.98045456,0.00013635283,0.01887431,0.000021591994,0.00010465469,0.00018346863,0.000088959474,0.00004987562,0.000086232794],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9966921,0.0004683502,0.0006190354,0.00044633567,0.0012451952,0.0005289521],"domain_scores_gemma":[0.99632514,0.0003030799,0.00017139089,0.0009953517,0.0018188804,0.00038613292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003582529,0.00022201776,0.000666811,0.0003401975,0.0001194566,0.000035094745,0.0005262358,0.00015597006,0.0000058773753],"category_scores_gemma":[0.0027378255,0.00014190949,0.00024441475,0.0010318344,0.00048581138,0.00006490998,0.00015628099,0.00024304847,0.0000029493847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014066964,0.0003450581,0.005081209,0.0004329121,0.0007900538,0.0000014087556,0.00071244396,0.00013597458,0.9815256,0.00011323606,0.005293574,0.0041618333],"study_design_scores_gemma":[0.00743405,0.0022797917,0.010192152,0.0003994742,0.00022523606,0.000010927094,0.011094921,0.07671676,0.8862059,0.000016537126,0.005166711,0.00025754166],"about_ca_topic_score_codex":0.0034717564,"about_ca_topic_score_gemma":0.00004845296,"teacher_disagreement_score":0.095319696,"about_ca_system_score_codex":0.00012976106,"about_ca_system_score_gemma":0.00054333336,"threshold_uncertainty_score":0.5786901},"labels":[],"label_agreement":null},{"id":"W2064274220","doi":"10.1039/c0mb00329h","title":"Receptor domains of two-component signal transduction systems","year":2011,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Histidine kinase; Signal transduction; Two-component regulatory system; Biology; Component (thermodynamics); Cell biology; Computational biology; Receptor; Kinase; Function (biology); Biochemistry; Histidine; Gene; Amino acid","score_opus":0.019460715369891288,"score_gpt":0.26098136752957596,"score_spread":0.24152065215968466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064274220","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034594731,0.9915225,0.0011777476,0.0000059928025,0.0017873053,0.0013775405,0.00033609,0.00003742506,0.00029595208],"genre_scores_gemma":[0.016327586,0.9812437,0.00030919985,0.000007759534,0.0006092102,0.00016845552,0.0010222631,0.00013996448,0.00017184939],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968261,0.00045644917,0.0011622584,0.0008724478,0.00022476388,0.00045796475],"domain_scores_gemma":[0.9978954,0.000008047639,0.00078801846,0.001030096,0.00014264393,0.0001357876],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00037910123,0.0006625666,0.0016263424,0.00024764746,0.00005807007,0.000036785423,0.00068187265,0.0013560441,0.00004886297],"category_scores_gemma":[0.0000122804,0.0005699916,0.0008187023,0.00027393503,0.00017134064,0.000002210001,0.00016805455,0.00027077683,0.000047255286],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033606913,0.00014658803,0.0000014852421,0.008875451,0.00079144194,0.000011444126,0.000013927368,0.0000034675534,0.9059965,0.0008866826,0.00031766985,0.08292175],"study_design_scores_gemma":[0.00033926696,0.00040510384,1.4184268e-7,0.0023081026,0.00042775783,0.00015870064,0.000014605805,0.00000227816,0.09182797,0.0000057839884,0.9039529,0.00055738864],"about_ca_topic_score_codex":0.00011160227,"about_ca_topic_score_gemma":0.0000059573977,"teacher_disagreement_score":0.9036352,"about_ca_system_score_codex":0.000047093028,"about_ca_system_score_gemma":0.00020055614,"threshold_uncertainty_score":0.9999404},"labels":[],"label_agreement":null},{"id":"W2068400392","doi":"10.1039/b606798k","title":"Proteomics technology in systems biology","year":2006,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Proteomics; Systems biology; Data science; Biology; Genomics; Computer science; Engineering ethics; Computational biology; Engineering; Genome","score_opus":0.017462099065166117,"score_gpt":0.3222850980917487,"score_spread":0.3048229990265826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068400392","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000037835216,0.9834327,0.010640139,0.00002137479,0.00009157972,0.0019665137,0.00025866713,0.00042636038,0.0031248364],"genre_scores_gemma":[0.00044020658,0.98627645,0.0051312214,0.000004365255,0.00014456836,0.0067653162,0.0006263783,0.00017293675,0.00043855136],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972213,0.00006719192,0.0012012925,0.00086137454,0.000117169424,0.00053166033],"domain_scores_gemma":[0.9978998,0.00003239086,0.0007168546,0.0012331929,0.000057699694,0.000060113496],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001765496,0.0006066482,0.0018524462,0.00054555776,0.000058220154,0.000049185684,0.00083382137,0.001748108,0.000010441451],"category_scores_gemma":[0.000028558961,0.00055932853,0.0003252935,0.00079377095,0.00010257166,0.00002209761,0.0002091769,0.00079698896,0.000058060094],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009003641,0.00052756787,0.00009692023,0.1672435,0.0004704821,0.00048063794,0.000013505399,0.000058402664,0.10172362,0.25634822,0.00066807284,0.47236007],"study_design_scores_gemma":[0.000117078285,0.000012799805,4.701476e-9,0.008242349,0.00008279141,0.00014331263,0.0000065383365,0.00003606695,0.003554854,0.001278009,0.9859633,0.00056290155],"about_ca_topic_score_codex":0.00016978117,"about_ca_topic_score_gemma":0.0000057940265,"teacher_disagreement_score":0.98529524,"about_ca_system_score_codex":0.00041256056,"about_ca_system_score_gemma":0.00015845185,"threshold_uncertainty_score":0.9996858},"labels":[],"label_agreement":null},{"id":"W2069098510","doi":"10.1039/c1mb05235g","title":"An omics perspective of protein disorder","year":2011,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Proteome; Omics; Computational biology; Perspective (graphical); Biology; Genome; Data science; Computer science; Bioinformatics; Genetics; Artificial intelligence; Gene","score_opus":0.01351256468507297,"score_gpt":0.27290324756855816,"score_spread":0.2593906828834852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069098510","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00021272551,0.99231964,0.003547513,0.0000029219777,0.00019397505,0.001410914,0.00017026193,0.000015153378,0.00212689],"genre_scores_gemma":[0.004583814,0.9932295,0.0007593937,0.00002066233,0.00023479147,0.0001458176,0.0006677581,0.00012888377,0.00022936377],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99803734,0.0001984682,0.0007609637,0.00052775734,0.00013945588,0.0003360239],"domain_scores_gemma":[0.9979022,0.0000038217318,0.0006367545,0.0011537235,0.00017004005,0.00013342685],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028689043,0.0004959195,0.0010818595,0.00011754539,0.00004748915,0.000031773347,0.0006440326,0.00077339,0.000012123574],"category_scores_gemma":[0.000020664194,0.00042272577,0.000582989,0.000166421,0.00010357795,0.0000036065514,0.00016472574,0.00022160642,0.000022155416],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000091328235,0.0007320118,0.0000067509245,0.033595156,0.0028418263,0.00003230715,0.00052039436,0.000019761294,0.024238113,0.035467755,0.0005820145,0.9018726],"study_design_scores_gemma":[0.00021121299,0.00044716118,1.6389828e-7,0.0018043929,0.00027253342,0.000043685,0.0001413454,0.000028348575,0.001435342,0.00017098656,0.99483097,0.0006138729],"about_ca_topic_score_codex":0.000100140795,"about_ca_topic_score_gemma":0.000020748794,"teacher_disagreement_score":0.9942489,"about_ca_system_score_codex":0.000040899915,"about_ca_system_score_gemma":0.00026163363,"threshold_uncertainty_score":0.99982244},"labels":[],"label_agreement":null},{"id":"W2073827739","doi":"10.1039/b708867a","title":"Cap-independent regulation of gene expression in apoptosis","year":2007,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Internal ribosome entry site; Translation (biology); Cell biology; Biology; Programmed cell death; Protein biosynthesis; Cellular stress response; Apoptosis; Gene expression; Proteome; Integrated stress response; Untranslated region; Eukaryotic translation; Mechanism (biology); Messenger RNA; Gene; Genetics; Fight-or-flight response","score_opus":0.025884450981937566,"score_gpt":0.29126454237699784,"score_spread":0.26538009139506025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073827739","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014553465,0.9894859,0.007034308,0.0000024842905,0.00033742376,0.0011702008,0.000043755772,0.000011482046,0.00045905315],"genre_scores_gemma":[0.0148806665,0.9818437,0.0019745196,0.0000138469995,0.00020560368,0.00017082387,0.0005097717,0.00011934466,0.00028169501],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99714416,0.00043694145,0.0009926949,0.0006816865,0.00040073588,0.00034380142],"domain_scores_gemma":[0.9982953,0.00001919655,0.0006229297,0.0008904591,0.00007855502,0.0000935244],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008123073,0.0004503717,0.001112507,0.0003161582,0.000031930944,0.000020163812,0.00042278107,0.0010205664,0.000020251724],"category_scores_gemma":[0.00006306499,0.0003983265,0.00051869027,0.0002662496,0.000031908,0.0000028711415,0.00012160208,0.0001492204,0.000016658774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001527477,0.000046583078,0.000002971858,0.0037053733,0.00006732725,0.000008215876,0.000009609716,0.0000040558307,0.8871078,0.000029255854,0.000047450038,0.10895607],"study_design_scores_gemma":[0.00015091944,0.00007663175,0.0000012077281,0.004064922,0.0000753425,0.000023369901,0.000009642536,8.996334e-7,0.7147293,0.000009021013,0.28055447,0.0003043019],"about_ca_topic_score_codex":0.000034599583,"about_ca_topic_score_gemma":0.000009742789,"teacher_disagreement_score":0.280507,"about_ca_system_score_codex":0.000055832857,"about_ca_system_score_gemma":0.00013263799,"threshold_uncertainty_score":0.9998469},"labels":[],"label_agreement":null},{"id":"W2077107387","doi":"10.1039/c4mb00561a","title":"Mathematical modeling of the <i>apo</i> and <i>holo</i> transcriptional regulation in <i>Escherichia coli</i>","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Biotech (Canada); University of British Columbia","funders":"","keywords":"Escherichia coli; Escherichia coli Proteins; Computational biology; Chemistry; Biology; Biochemistry; Gene","score_opus":0.013974987152425924,"score_gpt":0.2147017694667125,"score_spread":0.20072678231428656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077107387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943203,0.0007897505,0.003321149,0.00040716425,0.00012667904,0.00027272414,0.000014745131,0.0000074220898,0.0007400925],"genre_scores_gemma":[0.9987959,0.000019069756,0.00088103925,0.00013537957,0.000037866346,0.000014476055,0.000018315955,0.000016883188,0.000081014776],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990264,0.00009500591,0.0003086766,0.00024729324,0.00016173843,0.00016084395],"domain_scores_gemma":[0.999482,0.000002823991,0.00007578662,0.0003096349,0.00007411121,0.000055679913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002885142,0.00012753575,0.00017185269,0.000034605022,0.00002318508,0.00001484722,0.00017518784,0.0002557793,0.0000031389616],"category_scores_gemma":[0.000039660164,0.000099389,0.000062701976,0.00014173053,0.00009399861,0.0000025830047,0.0000929212,0.000083319035,0.000002390724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004797111,0.000038553535,0.00015322033,0.00003180693,0.000013407122,9.246538e-7,0.00003159212,0.00055256084,0.9976327,0.0013879694,0.000048168047,0.00006116525],"study_design_scores_gemma":[0.0011232849,0.00025028444,0.00024840073,0.00007485213,0.000024153705,0.00003979227,0.00009073832,0.013155967,0.9774627,0.0015390384,0.0057585374,0.00023224893],"about_ca_topic_score_codex":0.000019985107,"about_ca_topic_score_gemma":0.000019643821,"teacher_disagreement_score":0.020169958,"about_ca_system_score_codex":0.000010912188,"about_ca_system_score_gemma":0.00006108808,"threshold_uncertainty_score":0.40529656},"labels":[],"label_agreement":null},{"id":"W2079372780","doi":"10.1039/b719826d","title":"Accurate measurements of protein interactions in cells <i>via</i> improved spatial image cross-correlation spectroscopy","year":2008,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; University of Virginia","keywords":"Fluorescence correlation spectroscopy; Measure (data warehouse); Spatial correlation; Biological system; Colocalization; Microscopy; Spectroscopy; Physics; Correlation; Fluorescence; Pixel; Spatial analysis; Computer science; Optics; Mathematics; Statistics; Biology; Data mining; Geometry","score_opus":0.013008187493548947,"score_gpt":0.2929469685399158,"score_spread":0.2799387810463669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079372780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6190868,0.00015234234,0.3795413,0.000011797099,0.00016028722,0.0007499033,0.00001988555,0.000027339629,0.00025037595],"genre_scores_gemma":[0.97828585,0.000014610636,0.02126979,0.000030508563,0.00005944763,0.000107171654,0.0000787703,0.000043986278,0.00010987956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983813,0.00011327437,0.0005323172,0.0004596408,0.0002043214,0.0003091162],"domain_scores_gemma":[0.9989522,0.0000041763674,0.00029385785,0.0004894506,0.00019944603,0.000060873972],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019897823,0.00023927557,0.00024700243,0.00011400942,0.000069508664,0.000021591422,0.00024376351,0.0001395901,0.0000090467665],"category_scores_gemma":[0.00006283866,0.00025372577,0.00011947309,0.00018668064,0.00014599408,0.000020702382,0.00009640138,0.00016463359,0.0000101179685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096641714,0.00010919085,0.0041281455,0.00004341208,0.000021059972,0.000011593811,0.000034347097,0.00007402691,0.9953709,0.0000018483597,0.000038358547,0.00007045814],"study_design_scores_gemma":[0.0005732129,0.00020016592,0.00061751384,0.00008011628,0.000006293463,0.000021341031,0.0000074261843,0.00044742785,0.9975906,0.000017269993,0.00020594,0.00023267008],"about_ca_topic_score_codex":0.00034909628,"about_ca_topic_score_gemma":0.00009089072,"teacher_disagreement_score":0.35919905,"about_ca_system_score_codex":0.0000742554,"about_ca_system_score_gemma":0.00008028949,"threshold_uncertainty_score":0.9999915},"labels":[],"label_agreement":null},{"id":"W2080094927","doi":"10.1039/c4mb00526k","title":"Investigating the functional implications of reinforcing feedback loops in transcriptional regulatory networks","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Occupational Cancer Research Centre; Canadian Sugar Institute; University of Toronto","funders":"","keywords":"Network motif; Gene regulatory network; Computational biology; microRNA; Biology; Systems biology; Transcription factor; Positive feedback; Epigenetics; Regulation of gene expression; Computer science; Gene; Biological network; Genetics; Gene expression","score_opus":0.0092181487460618,"score_gpt":0.20571205866214992,"score_spread":0.19649390991608812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080094927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9473173,0.0012887906,0.050032813,0.0003367835,0.00013808503,0.00022415469,0.0000047820427,0.000011953607,0.0006453599],"genre_scores_gemma":[0.99888426,0.000012535654,0.00028221303,0.00023735361,0.00025135075,0.000043503547,0.00014360808,0.000027400049,0.00011778151],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99842876,0.00023744268,0.0004982192,0.0003477866,0.00022821508,0.00025959272],"domain_scores_gemma":[0.9989213,0.000024143006,0.00020939324,0.00064259634,0.00012587108,0.000076717726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007188133,0.00017596595,0.00021339682,0.00008238626,0.0001094549,0.000021557304,0.000261627,0.0001756121,0.000010141104],"category_scores_gemma":[0.00006181667,0.00015160505,0.00019675358,0.0003779778,0.0001476623,0.000004627803,0.00006168545,0.00012146064,0.0000030680683],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000080836835,0.000016249565,0.019259196,0.00002621882,0.00008266494,2.2865554e-7,0.000022303606,0.14043958,0.8352038,0.00387051,0.0004424547,0.00062866486],"study_design_scores_gemma":[0.0024776352,0.000379458,0.53447324,0.00033304712,0.00027026498,0.000113656606,0.00035069344,0.10468316,0.3357829,0.0013132079,0.018578438,0.0012442982],"about_ca_topic_score_codex":0.000032084787,"about_ca_topic_score_gemma":0.000086418644,"teacher_disagreement_score":0.515214,"about_ca_system_score_codex":0.000027392525,"about_ca_system_score_gemma":0.000069895155,"threshold_uncertainty_score":0.6182275},"labels":[],"label_agreement":null},{"id":"W2081215964","doi":"10.1039/c3mb70493a","title":"Electrochemical detection of the Fc-STAT3 phosphorylation and STAT3–Fc-STAT3 dimerization and inhibition","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Chemical Synthesis and Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dairy Farmers of Ontario; The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto","keywords":"STAT protein; STAT3; Chemistry; Ferrocene; Electrochemistry; Redox; Activator (genetics); Phosphorylation; Biophysics; Biochemistry; Cell biology; Combinatorial chemistry; Biology; Receptor; Electrode; Inorganic chemistry","score_opus":0.0019610444377032837,"score_gpt":0.17085657811517105,"score_spread":0.16889553367746776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081215964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886681,0.0012114431,0.009590478,0.00013809683,0.000032354532,0.00026507117,0.0000131475335,0.000009822053,0.000071482],"genre_scores_gemma":[0.99943805,0.00016132068,0.00010794505,0.000062233965,0.000042612875,0.000030198486,0.00009504063,0.000019010306,0.000043570788],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900955,0.000080694976,0.0002651708,0.00031529824,0.00016525554,0.00016402398],"domain_scores_gemma":[0.99944556,0.000012797116,0.00015635468,0.00022274897,0.00009792419,0.00006459499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010672592,0.0001475177,0.0001634373,0.00003446281,0.00007524745,0.000041533207,0.000060779985,0.00015851726,0.00000961373],"category_scores_gemma":[0.00009161039,0.0001162388,0.000083942985,0.00016185036,0.00008744553,0.000009009033,0.00007031234,0.000069247246,0.0000027731378],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018734527,0.000021992537,0.0007024839,0.00004636972,0.000043960074,2.0163534e-7,0.000022578359,0.0000032460384,0.9968276,0.000021252346,0.000025589541,0.002266001],"study_design_scores_gemma":[0.00022449053,0.00009246196,0.0010101327,0.000031575233,0.000046464364,0.0000062948184,0.000051015122,0.00082904205,0.9967112,0.00007613695,0.00078117254,0.00014003387],"about_ca_topic_score_codex":0.00011030931,"about_ca_topic_score_gemma":0.000020909374,"teacher_disagreement_score":0.010769962,"about_ca_system_score_codex":0.00001733064,"about_ca_system_score_gemma":0.00001464814,"threshold_uncertainty_score":0.47400808},"labels":[],"label_agreement":null},{"id":"W2083498261","doi":"10.1039/c4mb00027g","title":"The intrinsic disorder status of the human hepatitis C virus proteome","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Hepatitis C virus research","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Proteome; Hepatitis a virus; Human proteome project; Hepatitis C virus; Biology; Virology; Virus; Computational biology; Proteomics; Bioinformatics; Genetics; Gene","score_opus":0.01092025791855009,"score_gpt":0.2824338248765707,"score_spread":0.2715135669580206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083498261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907596,0.0006292751,0.00037494404,0.00079356437,0.00019382821,0.0015741413,0.000021584961,0.000036442736,0.0056165955],"genre_scores_gemma":[0.9988488,0.00014077307,0.000038271683,0.00013439512,0.00009962791,0.00013393704,0.000008508177,0.000040845214,0.0005548189],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975767,0.0004770483,0.0004004133,0.0002395804,0.0007933325,0.0005128978],"domain_scores_gemma":[0.99841607,0.00006872198,0.00013871686,0.0010170515,0.00020164618,0.00015777728],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000561274,0.00015336325,0.00028241443,0.00007186265,0.00026225112,0.000046183337,0.0003200782,0.000094668096,0.000036471152],"category_scores_gemma":[0.000604702,0.000084133906,0.0001555524,0.00036088383,0.00023521385,0.000025566052,0.00017114566,0.00026971925,0.00006438789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028333543,0.000103397746,0.2561421,0.0002885099,0.00013693416,0.000020901258,0.00019973158,0.0000032865369,0.7213298,0.005025611,0.00054975215,0.01617164],"study_design_scores_gemma":[0.0020507164,0.00074495137,0.16982813,0.0004629452,0.00007920255,0.000024211167,0.000067348905,0.0006396008,0.4315304,0.00038725612,0.3938665,0.00031873447],"about_ca_topic_score_codex":0.009364171,"about_ca_topic_score_gemma":0.0028417818,"teacher_disagreement_score":0.39331678,"about_ca_system_score_codex":0.00009916934,"about_ca_system_score_gemma":0.00012531597,"threshold_uncertainty_score":0.99723256},"labels":[],"label_agreement":null},{"id":"W2084881641","doi":"10.1039/c2mb25118c","title":"Combining redox-proteomics and epigenomics to explain the involvement of oxidative stress in psychiatric disorders","year":2012,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Tryptophan and brain disorders","field":"Neuroscience","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto; Centre for Addiction and Mental Health","funders":"","keywords":"Oxidative stress; Epigenetics; Epigenomics; Schizophrenia (object-oriented programming); Proteomics; DNA methylation; Bipolar disorder; Bioinformatics; DNA damage; Psychiatry; Biology; Neuroscience; Computational biology; Medicine; DNA; Genetics; Biochemistry; Gene; Cognition","score_opus":0.036569112776316866,"score_gpt":0.28745458452933315,"score_spread":0.2508854717530163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084881641","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013830543,0.9810932,0.00043350089,0.00009795785,0.0004760691,0.0036128548,0.00014235669,0.000024708592,0.00028876675],"genre_scores_gemma":[0.05041213,0.94856936,0.00033233993,0.00015172349,0.00004730123,0.00035147122,0.000023420665,0.00008920249,0.000023024038],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970026,0.00077801896,0.00081770733,0.0006232029,0.00031721356,0.0004612302],"domain_scores_gemma":[0.99848455,0.0002183533,0.0005290143,0.00062653463,0.0000168021,0.00012476895],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005277106,0.00044927446,0.0010082083,0.00039848068,0.00010046986,0.000060751143,0.0006963289,0.00021564159,0.000003942896],"category_scores_gemma":[0.00014320473,0.0003303669,0.00022690414,0.0009455411,0.00012478286,0.00005411825,0.00029816767,0.00033562857,0.000014023376],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011662868,0.0015901986,0.0005022348,0.06272981,0.00035597215,0.000052510473,0.0109053515,0.00014684355,0.05682235,0.027957333,0.00022506318,0.8385957],"study_design_scores_gemma":[0.0029069977,0.0009513654,0.000060064627,0.021367026,0.00068659894,0.00005220858,0.005179121,0.00011922294,0.046837885,0.0009735384,0.917137,0.0037289618],"about_ca_topic_score_codex":0.00012865537,"about_ca_topic_score_gemma":0.0001721102,"teacher_disagreement_score":0.91691196,"about_ca_system_score_codex":0.000090397494,"about_ca_system_score_gemma":0.00010119982,"threshold_uncertainty_score":0.9999148},"labels":[],"label_agreement":null},{"id":"W2088585163","doi":"10.1039/b905580k","title":"Phosphoproteomics—finally fulfilling the promise?","year":2009,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia; Royal Society of Chemistry; Royal Society","keywords":"Phosphoproteomics; Phosphopeptide; Protein phosphorylation; Phosphorylation; Signal transduction; Computational biology; Posttranslational modification; Biology; Proteomics; Phosphoserine; Proteome; Biochemistry; Serine; Chemistry; Cell biology; Protein kinase A","score_opus":0.022182640875363636,"score_gpt":0.30419717468413954,"score_spread":0.2820145338087759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088585163","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000131747365,0.9822534,0.009451048,0.00007340333,0.00005170849,0.0018184832,0.00010194539,0.00031678108,0.0059201033],"genre_scores_gemma":[0.00005779307,0.9888923,0.007315875,0.00006158217,0.0002542938,0.001966857,0.00020102852,0.00014651612,0.0011037164],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975922,0.000055575198,0.00087640085,0.00072916015,0.00029820265,0.0004484616],"domain_scores_gemma":[0.99739695,0.00005013969,0.00074870244,0.0016181137,0.0000783568,0.00010771782],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027262996,0.0006373162,0.0012212233,0.00006462803,0.0002404739,0.00014950478,0.0012107568,0.0005916621,0.00007319598],"category_scores_gemma":[0.000036030906,0.00043753875,0.00078824785,0.00032262166,0.00006568927,0.00003075005,0.0001489554,0.00080507365,0.0001050784],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000046596774,0.000065948916,2.1802268e-7,0.012507532,0.00019158053,0.000053063093,0.00001924215,0.0000041296953,0.007586065,0.004928508,0.00047471374,0.97416437],"study_design_scores_gemma":[0.00007550133,0.000012399759,5.332132e-9,0.0073927934,0.00028684226,0.00013050891,0.000006174192,0.000021197893,0.0138074085,0.00068768376,0.97706383,0.00051565055],"about_ca_topic_score_codex":0.000020013422,"about_ca_topic_score_gemma":0.0000012932427,"teacher_disagreement_score":0.97658914,"about_ca_system_score_codex":0.00020926338,"about_ca_system_score_gemma":0.00019531114,"threshold_uncertainty_score":0.99980766},"labels":[],"label_agreement":null},{"id":"W2090006012","doi":"10.1039/c0mb00326c","title":"Microarray-based target identification using drug hypersensitive fission yeast expressing ORFeome","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Computational biology; Biology; Gene; Etoposide; Small molecule; Microarray analysis techniques; Identification (biology); Genetics; Gene expression","score_opus":0.048517525568907184,"score_gpt":0.2448029321831274,"score_spread":0.19628540661422023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090006012","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819595,0.00030870512,0.00024162875,0.00010745543,0.00014717005,0.00029087358,0.0002449504,0.0000713297,0.00039193121],"genre_scores_gemma":[0.9990709,0.0000041677085,0.0005853177,0.000065718516,0.00007721612,0.000011036941,0.00010098393,0.0000022686054,0.00008240897],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984805,0.0003019052,0.0002298066,0.00035407866,0.00031430193,0.00031940272],"domain_scores_gemma":[0.9995206,0.000041910876,0.0001245901,0.00009132655,0.00011850409,0.000103076054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039292726,0.00015763349,0.0001817958,0.000033187087,0.00034763632,0.00007898239,0.00019382437,0.00006979367,0.000059955222],"category_scores_gemma":[0.00007359519,0.0000683069,0.00009457395,0.0002723023,0.00007136347,0.00009390937,0.00007346725,0.00010888293,0.000063371976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002272117,0.00004149854,0.0003180858,0.000015532725,0.000015795975,0.000046329347,0.00021090508,0.0000060011985,0.9986998,0.0000069848925,0.0002065736,0.00040980073],"study_design_scores_gemma":[0.000091093774,0.000027505237,0.0029566267,0.00011111126,0.000010062952,0.000010642217,0.00079796143,0.0011091518,0.993217,0.000019879806,0.0014598409,0.00018914198],"about_ca_topic_score_codex":0.00067550706,"about_ca_topic_score_gemma":0.00004528394,"teacher_disagreement_score":0.005482789,"about_ca_system_score_codex":0.000050767783,"about_ca_system_score_gemma":0.00001396865,"threshold_uncertainty_score":0.27854747},"labels":[],"label_agreement":null},{"id":"W2090543305","doi":"10.1039/c3mb70219g","title":"Chemical and biosynthetic evolution of the antimycin-type depsipeptides","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Depsipeptide; Polyketide; Nonribosomal peptide; Biology; Gene cluster; Chemistry; Computational biology; Biochemistry; Enzyme; Stereochemistry; Gene; Biosynthesis","score_opus":0.004968254770856829,"score_gpt":0.19679601550959963,"score_spread":0.1918277607387428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090543305","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954873,0.001561519,0.000010246853,0.0018669618,0.00016915843,0.00054688135,0.0000035103,0.000022401162,0.00033203643],"genre_scores_gemma":[0.99940276,0.000015726922,0.00023003225,0.00012056846,0.000055249515,8.9000787e-7,0.00000194656,0.000013946212,0.00015886406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99918395,0.000051499926,0.00022127571,0.0002183865,0.00016800899,0.00015686065],"domain_scores_gemma":[0.99934536,0.000017091164,0.00008565036,0.00033860593,0.0001506115,0.0000626672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011043119,0.00011980273,0.00022574412,0.000048818965,0.000037741014,0.000016185853,0.00009510478,0.000107593754,0.000047984733],"category_scores_gemma":[0.00018626322,0.0000676178,0.00008251306,0.0002458854,0.0001253867,0.000030077821,0.00006817714,0.00009745577,0.000027787511],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013540024,0.000030442616,0.0017627197,0.00016239242,0.00003209785,0.0000019038672,0.000015486703,1.0582021e-7,0.9965259,0.00017359691,0.00059213355,0.0006897126],"study_design_scores_gemma":[0.00019120413,0.00004640175,0.0038647323,0.00024912704,0.000061314815,0.000120094206,0.000043041586,0.0000624439,0.99456,0.00004433892,0.0006707501,0.00008651885],"about_ca_topic_score_codex":0.000262477,"about_ca_topic_score_gemma":0.0000018412743,"teacher_disagreement_score":0.0039154915,"about_ca_system_score_codex":0.00003530857,"about_ca_system_score_gemma":0.000034238856,"threshold_uncertainty_score":0.2757374},"labels":[],"label_agreement":null},{"id":"W2091226991","doi":"10.1039/c4mb00088a","title":"Uncovering allosteric pathways in caspase-1 using Markov transient analysis and multiscale community detection","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"Engineering and Physical Sciences Research Council","keywords":"Allosteric regulation; Markov chain; Computational biology; Allosteric enzyme; Signaling proteins; Chemistry; Computer science; Signal transduction; Biology; Receptor; Biochemistry; Machine learning","score_opus":0.007227546870557943,"score_gpt":0.2150414656889972,"score_spread":0.20781391881843927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091226991","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8676648,0.00024865058,0.13169998,0.0000057642046,0.00007306951,0.00018258062,0.000015003899,0.000010564477,0.00009955481],"genre_scores_gemma":[0.9987826,0.000011319317,0.0010095082,0.000068717396,0.000033072047,0.00001161408,0.000057639743,0.000019528497,0.0000060263974],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987999,0.00037131194,0.00023513842,0.00027148335,0.00011167084,0.00021046145],"domain_scores_gemma":[0.99940705,0.000009809586,0.00007841941,0.00040092642,0.0000328086,0.00007097678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036390751,0.00016975775,0.00023026478,0.0001415509,0.00010279313,0.000035820558,0.00011524626,0.0001698149,0.0000010213904],"category_scores_gemma":[0.000035194913,0.00017169213,0.00010461132,0.0002981221,0.00003343842,0.000004430668,0.00009066224,0.00013843569,4.1631e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028818464,0.00001961857,0.0036593105,0.000053553205,0.000096791075,0.000006659359,0.00008350128,0.0017972962,0.99172246,0.000003569824,3.9344278e-7,0.0025280204],"study_design_scores_gemma":[0.0010214543,0.0003121873,0.017387303,0.000050851213,0.00021847381,0.000080333826,0.00020760752,0.05193956,0.92786545,0.00005910064,0.00035801908,0.00049968995],"about_ca_topic_score_codex":0.0013310008,"about_ca_topic_score_gemma":0.0031990006,"teacher_disagreement_score":0.13111773,"about_ca_system_score_codex":0.000032376873,"about_ca_system_score_gemma":0.000012583773,"threshold_uncertainty_score":0.7001402},"labels":[],"label_agreement":null},{"id":"W2093854727","doi":"10.1039/b820820b","title":"The complex biology of autocrine motility factor/phosphoglucose isomerase (AMF/PGI) and its receptor, the gp78/AMFR E3 ubiquitin ligase","year":2009,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Ubiquitin ligase; Biology; Glucose-6-phosphate isomerase; Motility; Autocrine signalling; Cell biology; Receptor; Endoplasmic reticulum; Ubiquitin; Enzyme; Biochemistry; Gene","score_opus":0.04863072479358889,"score_gpt":0.33560753082956657,"score_spread":0.2869768060359777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093854727","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011543675,0.9836799,0.000024782372,0.00042660354,0.00046978839,0.0025152138,0.00037476805,0.0000851921,0.0008800872],"genre_scores_gemma":[0.029962266,0.9682577,0.0000411487,0.00034082803,0.0001914581,0.00014881633,0.00034579757,0.00006374636,0.0006482403],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963947,0.0008382804,0.0012441458,0.00063562236,0.0003607543,0.0005265208],"domain_scores_gemma":[0.9970898,0.0005725515,0.0007008194,0.0011327822,0.0002308376,0.0002732124],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007349515,0.0006386498,0.0023864522,0.00014347248,0.00022123904,0.000052802116,0.00037354458,0.0004026582,0.00020100371],"category_scores_gemma":[0.0007955248,0.000332025,0.00061743386,0.0004577786,0.00026750073,0.000025554753,0.00014374197,0.00049117435,0.00008375593],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012763421,0.00050919526,0.000115256735,0.026293669,0.0017453776,0.000081722086,0.00013763279,3.5748968e-7,0.028929839,0.0031193113,0.00523125,0.9337087],"study_design_scores_gemma":[0.00071579067,0.0004708126,0.00006147315,0.0047552474,0.0007876864,0.00010094476,0.000043770375,0.000069302776,0.0066083074,0.0000240221,0.9860858,0.00027684847],"about_ca_topic_score_codex":0.00008594987,"about_ca_topic_score_gemma":0.0000036816052,"teacher_disagreement_score":0.9808546,"about_ca_system_score_codex":0.00011145589,"about_ca_system_score_gemma":0.00027030546,"threshold_uncertainty_score":0.99991316},"labels":[],"label_agreement":null},{"id":"W2094928744","doi":"10.1039/c1mb05071k","title":"Secretome profiling with antibody microarrays","year":2011,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Advanced Biosensing Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Deutscher Akademischer Austauschdienst; Canadian Institute for Theoretical Astrophysics","keywords":"Proteome; Computational biology; Proteomics; DNA microarray; Biology; Antibody microarray; Profiling (computer programming); Biomarker discovery; Protein Array Analysis; Biomarker; Protein microarray; Human proteome project; Human genome; Genome; Bioinformatics; Antibody; Gene expression; Computer science; Gene; Genetics","score_opus":0.023826968226906022,"score_gpt":0.32727284590102773,"score_spread":0.30344587767412173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094928744","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017651948,0.97206664,0.024463722,0.0000049570485,0.00009176343,0.0015674055,0.00012687659,0.000117458956,0.0013846626],"genre_scores_gemma":[0.0007875543,0.9809279,0.014870537,0.000041462798,0.000227871,0.00023849389,0.002388133,0.00020273743,0.0003153442],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99789405,0.000116880154,0.00050390064,0.0009165316,0.00014459643,0.00042403454],"domain_scores_gemma":[0.9980812,0.000005900325,0.00043312923,0.0012280345,0.00012061407,0.00013113838],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015700361,0.00061276817,0.0009268055,0.00012001717,0.00010649492,0.000047490204,0.00048283322,0.00060584216,0.000004587859],"category_scores_gemma":[0.000014253063,0.00046710728,0.00039793612,0.00029636387,0.00011306211,0.0000025467295,0.00018098892,0.00025336095,0.000037598442],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003502381,0.00021549077,0.000012088051,0.015952518,0.0010420529,0.00015218818,0.000021074002,0.0000013546754,0.78900826,0.0030331546,0.0006562543,0.18987055],"study_design_scores_gemma":[0.00010072677,0.0001861464,1.2488184e-7,0.002901438,0.00026026194,0.0003391772,0.000007947554,0.0000011470968,0.032691605,0.00001454273,0.9628449,0.0006519661],"about_ca_topic_score_codex":0.000012109891,"about_ca_topic_score_gemma":0.000004062648,"teacher_disagreement_score":0.96218866,"about_ca_system_score_codex":0.000037144273,"about_ca_system_score_gemma":0.00020547358,"threshold_uncertainty_score":0.9997781},"labels":[],"label_agreement":null},{"id":"W2095212340","doi":"10.1039/c1mb05105a","title":"Metabolic footprinting of the anaerobic bacterium <i>Fusobacterium</i> <i>varium</i> using 1H NMR spectroscopy","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biochemistry; Valine; Glutamine; Amino acid; Glycine; Isoleucine; Biology; Leucine; Chemistry","score_opus":0.017468628477204907,"score_gpt":0.2329709809064857,"score_spread":0.21550235242928079,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095212340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995092,0.0011008078,0.0014922599,0.00004182839,0.00063500006,0.00048571383,0.000027025373,0.000021777942,0.0011035992],"genre_scores_gemma":[0.99563044,0.000056792163,0.0035966216,0.0003670371,0.0001693612,0.000010985599,0.000020545422,0.00006448553,0.000083735824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979222,0.00025085348,0.00057207665,0.0005238607,0.00018891638,0.0005421294],"domain_scores_gemma":[0.99831444,0.0000042233655,0.00040800642,0.0010028082,0.00014876627,0.000121755365],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003591228,0.00031968625,0.00039954524,0.00007156958,0.00014105874,0.0000313186,0.00056260196,0.00024280674,0.000021417656],"category_scores_gemma":[0.000033542427,0.00025758296,0.0003164933,0.0002975147,0.00013273957,0.0000063761145,0.00032485795,0.0001735012,0.0000074345776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033842163,0.00007165462,0.008657198,0.00009952707,0.00009152322,0.000004357558,0.00011593271,0.0000038608296,0.99055797,0.00026473834,0.00006815774,0.000031216747],"study_design_scores_gemma":[0.00038052624,0.00011729947,0.0132594695,0.00007000875,0.00007248936,0.00008304386,0.00006439249,0.000013733711,0.98026115,0.000013732337,0.0053899186,0.00027422066],"about_ca_topic_score_codex":0.0006565964,"about_ca_topic_score_gemma":0.00007516055,"teacher_disagreement_score":0.010296826,"about_ca_system_score_codex":0.00002639572,"about_ca_system_score_gemma":0.00018453042,"threshold_uncertainty_score":0.99998766},"labels":[],"label_agreement":null},{"id":"W2098898655","doi":"10.1039/c3mb25516f","title":"Large-scale investigation of oxygen response mutants in <i>Saccharomyces cerevisiae</i>","year":2013,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Hemoglobin structure and function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mutant; Gene; Biology; Saccharomyces cerevisiae; Genetics; Genetic screen; Plasmid; Gene knockdown; Phenotype; Molecular biology","score_opus":0.004754680810105013,"score_gpt":0.2098946834421989,"score_spread":0.20514000263209387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098898655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99739665,0.00068331027,0.0007476795,0.00018077955,0.00017271237,0.00043679343,0.00002547366,0.00001296393,0.00034364656],"genre_scores_gemma":[0.9990346,0.000019995236,0.00033176327,0.0002625642,0.00007183589,0.000044218334,0.00008445329,0.000023844988,0.00012673814],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99858683,0.0002578899,0.0003803406,0.00034177362,0.00018036668,0.00025281438],"domain_scores_gemma":[0.9992513,0.000010570478,0.00013942133,0.00040397694,0.00010840511,0.00008633416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039410678,0.00016647762,0.00021439088,0.000094990006,0.000030343217,0.000023728417,0.0001656718,0.00022013679,0.000036551603],"category_scores_gemma":[0.00007260121,0.00015581785,0.00008579979,0.00023681585,0.000043466753,0.000009124284,0.000066731096,0.00007384746,0.000031839194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000868492,0.00001570333,0.0090153515,0.000053052296,0.000020870102,0.000003922398,0.00014813713,0.000012002064,0.9897056,0.000016133452,0.00074979186,0.00017257135],"study_design_scores_gemma":[0.0006215544,0.00018005769,0.017753366,0.000063843705,0.000009854795,0.00002191995,0.0003264022,0.0001013004,0.97621506,0.000088975474,0.0044232854,0.00019440382],"about_ca_topic_score_codex":0.000083717474,"about_ca_topic_score_gemma":0.000031169136,"teacher_disagreement_score":0.013490578,"about_ca_system_score_codex":0.00001966674,"about_ca_system_score_gemma":0.00006065035,"threshold_uncertainty_score":0.63540673},"labels":[],"label_agreement":null},{"id":"W2099424814","doi":"10.1039/c0mb00159g","title":"Targeted proteomics by selected reaction monitoring mass spectrometry: applications to systems biology and biomarker discovery","year":2010,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Proteomics; Proteome; Biomarker discovery; Mass spectrometry; Computational biology; Biomarker; Quantitative proteomics; Profiling (computer programming); Posttranslational modification; Selected reaction monitoring; Chemistry; Biology; Nanotechnology; Bioinformatics; Computer science; Tandem mass spectrometry; Chromatography; Biochemistry; Materials science","score_opus":0.014657579021806429,"score_gpt":0.3126181750545183,"score_spread":0.29796059603271186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099424814","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004522997,0.7771448,0.21678212,0.000019538566,0.00015390075,0.003749061,0.0010294496,0.00038635137,0.00028245954],"genre_scores_gemma":[0.0023811527,0.9482379,0.029391572,0.0000060508364,0.0004978452,0.016406508,0.0022209473,0.00029430623,0.0005637399],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972339,0.00008229187,0.00087821024,0.0011087637,0.00018898204,0.0005078399],"domain_scores_gemma":[0.9977473,0.00006530367,0.0006978059,0.0011133553,0.00014527736,0.00023098187],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020302268,0.0006704414,0.0012754592,0.00029486438,0.0001981249,0.00023122047,0.0005096029,0.0011055089,0.00000390362],"category_scores_gemma":[0.0000527127,0.0006347646,0.00020586642,0.00102521,0.00006362948,0.00008797083,0.00014382502,0.0008038608,0.00002296585],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000003614352,0.000032976444,0.000010635607,0.00440046,0.00012578997,0.0000020294265,0.0000029713406,1.7797991e-7,0.97491986,0.0006102742,0.00005872529,0.019832507],"study_design_scores_gemma":[0.00009960912,0.000022830905,2.2629641e-7,0.002037507,0.00022579911,0.00007475375,0.000014336044,0.000015104839,0.1248694,0.00008171398,0.87185776,0.0007009391],"about_ca_topic_score_codex":0.00008806605,"about_ca_topic_score_gemma":9.755578e-7,"teacher_disagreement_score":0.87179905,"about_ca_system_score_codex":0.00034625593,"about_ca_system_score_gemma":0.000119508644,"threshold_uncertainty_score":0.99961036},"labels":[],"label_agreement":null},{"id":"W2100084025","doi":"10.1039/c5mb00415b","title":"Correlations of microRNA:microRNA expression patterns reveal insights into microRNA clusters and global microRNA expression patterns","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Hospital Edmonton; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"microRNA; Biology; Computational biology; Gene expression; Regulation of gene expression; Gene silencing; Gene; Messenger RNA; Gene expression profiling; Genetics","score_opus":0.009814313642319454,"score_gpt":0.24346852988855514,"score_spread":0.23365421624623567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100084025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9724711,0.0059813396,0.019314934,0.00017168988,0.0006608295,0.000902892,0.00029850515,0.000050911127,0.00014775712],"genre_scores_gemma":[0.99672294,0.000100657955,0.0015216765,0.00019210781,0.00025633155,0.000050213792,0.00096011494,0.0000908227,0.00010513306],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99642265,0.000474143,0.0009815447,0.001081108,0.0004974942,0.00054306525],"domain_scores_gemma":[0.99725395,0.000019756784,0.0006987853,0.0011069498,0.00039537819,0.0005251762],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032207966,0.0006074812,0.0005644261,0.00017070264,0.00017600272,0.00010080382,0.0005389912,0.00061103987,0.000010914288],"category_scores_gemma":[0.000103386046,0.0005895868,0.00027677626,0.00025303318,0.00017167746,0.000036701073,0.0006219556,0.00020247375,0.000018838284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021298393,0.00015036433,0.021601602,0.00032622713,0.00010305639,0.0000365293,0.00042721618,0.00009256887,0.97407055,0.0000154683,0.0026852025,0.0002782334],"study_design_scores_gemma":[0.0021815803,0.000249041,0.0059953607,0.0007800595,0.00009628015,0.00012519988,0.00048180742,0.00013192599,0.98379564,0.00006605884,0.0054281643,0.0006688495],"about_ca_topic_score_codex":0.00027689978,"about_ca_topic_score_gemma":0.000098202545,"teacher_disagreement_score":0.0242518,"about_ca_system_score_codex":0.00018206009,"about_ca_system_score_gemma":0.00020190855,"threshold_uncertainty_score":0.99965554},"labels":[],"label_agreement":null},{"id":"W2103107517","doi":"10.1039/b912993f","title":"A miniaturized screen for inhibitors of Jumonji histonedemethylases","year":2009,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research; National Institutes of Health; Wellcome Trust","keywords":"High-throughput screening; Demethylation; Biochemistry; Computational biology; Enzyme; Chemistry; Combinatorial chemistry; Biology; Gene; DNA methylation; Gene expression","score_opus":0.008677130551507919,"score_gpt":0.261774529026684,"score_spread":0.2530973984751761,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103107517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9791936,0.007490603,0.011371977,0.00017148574,0.00021878618,0.000614196,0.00006269904,0.000015929207,0.0008607177],"genre_scores_gemma":[0.9943889,0.00006801572,0.0047408557,0.00009711702,0.0002135565,0.000023015018,0.00020062788,0.00002389251,0.00024402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880177,0.0000754353,0.00038826553,0.00033599066,0.00017817755,0.00022036862],"domain_scores_gemma":[0.9991458,0.000015152268,0.00020342029,0.00038189025,0.00017244871,0.0000813113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002981837,0.00017425155,0.00024763838,0.00008382005,0.00004742905,0.000014978497,0.00016289321,0.00019792606,0.000002828198],"category_scores_gemma":[0.00015337806,0.00016911395,0.00022712692,0.000116396564,0.000039240036,0.0000023033651,0.000027940687,0.000039203907,0.0000018176884],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000087282955,0.00006124742,0.0001363666,0.00003396676,0.000037450904,0.0000014982373,0.000018837645,0.00002246085,0.9967818,0.00017045614,0.0008330807,0.0018154995],"study_design_scores_gemma":[0.00074752973,0.0008088751,0.00028332946,0.000030310688,0.000031717642,0.0000015219553,0.000016413089,0.000048153663,0.96871954,0.00018690586,0.02893215,0.00019354437],"about_ca_topic_score_codex":0.000018549148,"about_ca_topic_score_gemma":0.000006547431,"teacher_disagreement_score":0.02809907,"about_ca_system_score_codex":0.000013213071,"about_ca_system_score_gemma":0.00005106098,"threshold_uncertainty_score":0.6896267},"labels":[],"label_agreement":null},{"id":"W2106973564","doi":"10.1039/c2mb25265a","title":"qPCA: a scalable assay to measure the perturbation of protein–protein interactions in living cells","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; PROTEO","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research","keywords":"Computational biology; Measure (data warehouse); Scalability; Biology; Chemistry; Cell biology; Computer science; Data mining; Database","score_opus":0.009613304608533711,"score_gpt":0.22100403716742759,"score_spread":0.21139073255889387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106973564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9644123,0.0013226738,0.029442707,0.0003007387,0.0003181339,0.001299057,0.000013948306,0.000010019077,0.0028804757],"genre_scores_gemma":[0.9981002,0.000003161711,0.000639778,0.00014263597,0.0001562601,0.00012820224,0.000013418181,0.000021079184,0.0007952287],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988302,0.00017715644,0.00035324026,0.00016515862,0.00016900388,0.00030521647],"domain_scores_gemma":[0.9992604,0.000013988678,0.0001403438,0.00041227823,0.00008528223,0.00008770413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091148383,0.00014812825,0.00015703439,0.00006714869,0.00005983848,0.00003141332,0.00020944138,0.00010911592,0.000012074548],"category_scores_gemma":[0.000098128236,0.00011440666,0.00009075488,0.00019754953,0.000026653228,0.000008908798,0.000120843826,0.00012519362,0.000022926315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015125137,0.00005674017,0.00028665308,0.00004949793,0.000031495958,3.6714545e-7,0.00031611387,0.00016339804,0.9975541,0.00031206151,0.00033490057,0.0008795002],"study_design_scores_gemma":[0.00020833006,0.000105038314,0.00032524773,0.00035980454,0.000015263533,0.0000107864025,0.0003700598,0.0009040326,0.98032635,0.000040703344,0.017082699,0.00025168047],"about_ca_topic_score_codex":0.00008395875,"about_ca_topic_score_gemma":0.00007316375,"teacher_disagreement_score":0.03368799,"about_ca_system_score_codex":0.00003385256,"about_ca_system_score_gemma":0.000039868155,"threshold_uncertainty_score":0.46653682},"labels":[],"label_agreement":null},{"id":"W2110153587","doi":"10.1039/c0mb00080a","title":"Probing aromatic, hydrophobic, and steric effects on the self-assembly of an amyloid-β fragment peptide","year":2010,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Supramolecular Self-Assembly in Materials","field":"Materials Science","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Cornell Center for Materials Research; University of Rochester; Ryerson University; Medical Center, University of Rochester; National Science Foundation","keywords":"Chemistry; Steric effects; Peptide; Side chain; Amyloid (mycology); Stereochemistry; Amino acid; Aromatic amino acids; Aromaticity; Kinetics; Crystallography; Biochemistry; Molecule; Organic chemistry","score_opus":0.005427669341748126,"score_gpt":0.21970519007581094,"score_spread":0.2142775207340628,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110153587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963732,0.000100066696,0.00010595981,0.00016470344,0.0012611317,0.0014399335,0.00001067896,0.00019806689,0.00034628488],"genre_scores_gemma":[0.9968905,0.0000037758552,0.0024157658,0.00027012615,0.00012318128,0.00020214963,0.0000062194053,0.00007689382,0.000011426057],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9966672,0.00084566517,0.0006298837,0.00064763386,0.00070060714,0.0005089925],"domain_scores_gemma":[0.99781096,0.00025409515,0.00041791282,0.0012569329,0.00007805459,0.00018202105],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016342181,0.0004072799,0.00054595945,0.00013508496,0.00019321385,0.00034082483,0.0006828666,0.00020202884,0.000039452014],"category_scores_gemma":[0.00012407987,0.0002898343,0.000103171915,0.00022335634,0.00008644653,0.00015322161,0.00020245751,0.00019783093,0.00013635958],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024362842,0.00013210678,0.000046355683,0.0003408843,0.000038865313,0.00007670318,0.00047969658,0.0000068266754,0.99807197,0.0006270085,0.000034238503,0.00012100377],"study_design_scores_gemma":[0.00045779505,0.00045861598,0.00036151212,0.00020188087,0.00006111411,0.00008850545,0.0001447257,0.0004208498,0.9971393,0.00015675655,0.0001752399,0.00033373],"about_ca_topic_score_codex":0.0001192026,"about_ca_topic_score_gemma":0.00001849029,"teacher_disagreement_score":0.002309806,"about_ca_system_score_codex":0.000049897062,"about_ca_system_score_gemma":0.00007306159,"threshold_uncertainty_score":0.99995536},"labels":[],"label_agreement":null},{"id":"W2116136769","doi":"10.1039/c3mb90008h","title":"Focus on chemical biology in Asia","year":2013,"lang":"en","type":"editorial","venue":"Molecular BioSystems","topic":"Biotechnology and Related Fields","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Focus (optics); Biology; Computational biology; Data science; Computer science; Physics","score_opus":0.004025741651653748,"score_gpt":0.2453363255344119,"score_spread":0.24131058388275814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116136769","genre_codex":"editorial","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011538967,0.004732247,0.000077089484,0.010442777,0.95644,0.0013425021,0.000050922405,0.000279339,0.015096193],"genre_scores_gemma":[0.5506565,0.00059250434,0.0001388054,0.00033641755,0.44556883,0.0001874364,0.00082040037,0.00015132489,0.0015477765],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99818224,0.00009445347,0.0004431766,0.0006033974,0.0002700898,0.00040663223],"domain_scores_gemma":[0.99892193,0.00010042265,0.00014000396,0.0006518692,0.00008494255,0.000100823294],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00018229062,0.00035389073,0.00078726484,0.00036743516,0.000020796884,0.000011045009,0.0002461525,0.025355259,0.000062755185],"category_scores_gemma":[0.00038535986,0.00027723,0.00017928348,0.0002466519,0.00013067294,0.000009002396,0.00007708696,0.006805105,0.0005348274],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009551234,0.00013541947,0.000018327331,0.00019497208,0.00020365226,0.0005420515,0.000014552324,1.26418e-7,0.14224474,0.0019609712,0.85342884,0.0011608487],"study_design_scores_gemma":[0.0015254305,0.0004883247,0.0000040827877,0.0009163266,0.000092331604,0.00004611647,0.000012522342,0.00001615877,0.10747601,0.00024153336,0.8888539,0.00032722723],"about_ca_topic_score_codex":0.0001957526,"about_ca_topic_score_gemma":0.0000050394297,"teacher_disagreement_score":0.5391175,"about_ca_system_score_codex":0.00013439512,"about_ca_system_score_gemma":0.00016032047,"threshold_uncertainty_score":0.999968},"labels":[],"label_agreement":null},{"id":"W2123551980","doi":"10.1039/c5mb00470e","title":"Potential of serum metabolites for diagnosing post-stroke cognitive impairment","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China; University of Lethbridge","keywords":"Stroke (engine); Kynurenine; Metabolite; Cognition; Medicine; Pathological; Metabolomics; Internal medicine; Omics; Kynurenine pathway; Cognitive impairment; Biomarker; Oxidative stress; Inflammation; Bioinformatics; Psychiatry; Biology; Biochemistry; Tryptophan","score_opus":0.010069155661038023,"score_gpt":0.2517316053704467,"score_spread":0.24166244970940867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123551980","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.980853,0.009831424,0.0065475493,0.00014535074,0.0005254172,0.00073178473,0.0010278549,0.000012929006,0.00032464098],"genre_scores_gemma":[0.9977382,0.00010951522,0.0012341575,0.00015743144,0.00021832528,0.000095842865,0.0001527196,0.00003522724,0.00025861783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986133,0.00009237207,0.00034694094,0.0003845688,0.00022677585,0.0003360543],"domain_scores_gemma":[0.99885213,0.00001913253,0.00019287602,0.00026231832,0.00053684297,0.00013668688],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000403793,0.00022176835,0.0003673808,0.000106180305,0.000058542708,0.000027978076,0.00016157715,0.00012616105,0.0000052387677],"category_scores_gemma":[0.00030073535,0.00020257308,0.0002720381,0.000098860015,0.000069757174,0.00000420241,0.00014551985,0.00004846356,0.000003551328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014909316,0.00010951395,0.0013894977,0.00007001275,0.0004044324,0.000005994812,0.00005311303,0.000016522992,0.9967617,0.0003252648,0.0002656814,0.00044921532],"study_design_scores_gemma":[0.0016666086,0.0009542426,0.00088650815,0.00002781135,0.00016833954,0.000018341414,0.00077812216,0.000063198415,0.9906426,0.00006364271,0.0044868644,0.00024369531],"about_ca_topic_score_codex":0.000035327983,"about_ca_topic_score_gemma":0.0000100277375,"teacher_disagreement_score":0.016885113,"about_ca_system_score_codex":0.000014990916,"about_ca_system_score_gemma":0.000091640046,"threshold_uncertainty_score":0.82606906},"labels":[],"label_agreement":null},{"id":"W2124455757","doi":"10.1039/c5mb00488h","title":"Computational modeling of cytokine signaling in microglia","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Neuroinflammation and Neurodegeneration Mechanisms","field":"Neuroscience","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research","keywords":"Neuroinflammation; Microglia; Neuroscience; Cytokine; Cell biology; Signal transduction; Immunology; Biology; Computational biology; Chemistry; Inflammation","score_opus":0.05174865919545801,"score_gpt":0.2659218737185384,"score_spread":0.2141732145230804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124455757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95094794,0.000025871515,0.04796525,0.00013933325,0.00021982826,0.00021322831,0.000010396819,0.00004806728,0.0004300641],"genre_scores_gemma":[0.9984714,0.0000010538109,0.001130453,0.000310919,0.00002435043,0.000007636729,0.0000055507608,0.000017599667,0.000031080504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99857605,0.0002164501,0.0004103473,0.00027405002,0.00037959882,0.00014352208],"domain_scores_gemma":[0.99954444,0.00003222786,0.00010798884,0.00015383276,0.00008236845,0.00007913361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026124658,0.00010597525,0.0001573812,0.00018763439,0.000026465808,0.00003064556,0.00014671616,0.000042249572,0.0000072857806],"category_scores_gemma":[0.00018091263,0.00010968683,0.000044914075,0.0003142885,0.00001719115,0.000077717224,0.000036070196,0.000077718425,0.000029303828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009388812,0.00001915789,0.0000132198675,0.0000106820435,6.269147e-7,0.00003266296,0.00008043201,0.29528847,0.69969237,0.004827765,0.000009197305,0.000016016202],"study_design_scores_gemma":[0.00034132524,0.000025937477,4.257769e-7,0.000016182212,0.0000012979175,0.000019365365,0.00002161327,0.37968564,0.61920893,0.0005794449,0.000037240727,0.00006260225],"about_ca_topic_score_codex":0.000015114923,"about_ca_topic_score_gemma":0.0000024174603,"teacher_disagreement_score":0.08439716,"about_ca_system_score_codex":0.000029091574,"about_ca_system_score_gemma":0.0000668761,"threshold_uncertainty_score":0.44728988},"labels":[],"label_agreement":null},{"id":"W2127526666","doi":"10.1039/c0mb00235f","title":"Identification of an FHL1protein complex containing ACTN1, ACTN4, and PDLIM1 using affinity purifications and MS-based protein–protein interaction analysis","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Cardiomyopathy and Myosin Studies","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Heart and Stroke Foundation; Ontario Institute for Cancer Research; University of Toronto","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Ontario Genomics Institute; Genome Canada","keywords":"HEK 293 cells; LIM domain; Biology; Immunoprecipitation; Cell biology; Affinity chromatography; Protein–protein interaction; Computational biology; Chemistry; Biochemistry; Receptor; Transcription factor; Gene; Zinc finger","score_opus":0.06277262468024837,"score_gpt":0.3059447153641763,"score_spread":0.24317209068392792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127526666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98191786,0.00029625688,0.016117124,0.000084303356,0.0000342343,0.0012923066,0.00003253531,0.00004822814,0.00017713806],"genre_scores_gemma":[0.99707466,0.0000036354752,0.0026657374,0.000022537108,0.000029828692,0.000111650974,0.000055889377,0.000019839135,0.000016220092],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985021,0.00021620154,0.0005005978,0.0003834053,0.00022965703,0.00016807664],"domain_scores_gemma":[0.99876213,0.000017098404,0.00038067182,0.00044808254,0.00025594473,0.00013607336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055741833,0.00018081846,0.0005005991,0.00036287733,0.00015862909,0.000042857006,0.000061567625,0.000100837766,0.000011117192],"category_scores_gemma":[0.00015396773,0.00017475573,0.00013592654,0.00048229107,0.00012942462,0.00012878877,0.000038996477,0.00011447192,0.0000010993989],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020651828,0.00014253886,0.0018776822,0.00024765937,0.00048299512,0.000014342182,0.0006801983,0.0000105407935,0.9955243,0.0002248385,7.7696313e-7,0.00058761635],"study_design_scores_gemma":[0.0009785162,0.00041474015,0.024787094,0.00026366237,0.0013671403,0.00004207421,0.00198909,0.008575315,0.9612316,0.000037656515,0.0000832222,0.00022990699],"about_ca_topic_score_codex":0.0007333653,"about_ca_topic_score_gemma":0.000066799934,"teacher_disagreement_score":0.034292713,"about_ca_system_score_codex":0.000053886088,"about_ca_system_score_gemma":0.00005521087,"threshold_uncertainty_score":0.7126332},"labels":[],"label_agreement":null},{"id":"W2131207076","doi":"10.1039/c4mb00739e","title":"Exploring the mode of action of dithranol therapy for psoriasis: a metabolomic analysis using HaCaT cells","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Alberta Hospital Edmonton; University of Alberta","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Dithranol; Psoriasis; HaCaT; Metabolomics; Keratinocyte; Metabolite; Immune system; Mode of action; Pharmacology; Medicine; Chemistry; Biology; Immunology; Bioinformatics; Cell culture; Biochemistry; Genetics","score_opus":0.10831163576755261,"score_gpt":0.31633887077118283,"score_spread":0.20802723500363024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131207076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96069384,0.0036648957,0.03460483,0.000032005693,0.00043947925,0.0004530863,0.000066837514,0.0000059965364,0.00003905628],"genre_scores_gemma":[0.9973172,0.00078375795,0.0015881385,0.000020157138,0.00012561421,0.00008752392,0.000028533468,0.000024488052,0.000024586885],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877983,0.00012084297,0.00039135458,0.00030024943,0.0002056057,0.00020210218],"domain_scores_gemma":[0.99886197,0.00001646938,0.00031358743,0.0005057012,0.000250962,0.000051303887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003796269,0.00017756716,0.00046319276,0.000170486,0.00005483143,0.000013589092,0.0002300132,0.000074696196,0.0000010676016],"category_scores_gemma":[0.000056373465,0.00012820348,0.00039629027,0.00044403,0.00006167123,0.000006600347,0.000065727974,0.000043762077,3.2736872e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017383457,0.00005016718,0.00017144365,0.000036060737,0.0017714109,2.5904924e-7,0.0001558908,0.0020547078,0.9950089,0.00016106434,0.000040872157,0.00037540146],"study_design_scores_gemma":[0.0006981421,0.00018577489,0.000073316165,0.000008102995,0.0005043254,0.0000014752683,0.00061108154,0.0015008193,0.99411714,0.000039897943,0.0021251051,0.0001347898],"about_ca_topic_score_codex":0.0001943856,"about_ca_topic_score_gemma":0.000028513716,"teacher_disagreement_score":0.036623385,"about_ca_system_score_codex":0.000016264998,"about_ca_system_score_gemma":0.00005648597,"threshold_uncertainty_score":0.5227986},"labels":[],"label_agreement":null},{"id":"W2131525103","doi":"10.1039/c3mb70599d","title":"High-content screening of yeast mutant libraries by shotgun lipidomics","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Danmarks Frie Forskningsfond; Lundbeckfonden; Natur og Univers, Det Frie Forskningsråd","keywords":"Lipidomics; Yeast; Shotgun; Mutant; Orbitrap; Saccharomyces cerevisiae; Metabolomics; Computational biology; High-throughput screening; Biology; Genetic screen; Lipid metabolism; Biochemistry; Chemistry; Mass spectrometry; Gene; Bioinformatics; Chromatography","score_opus":0.009989268225396057,"score_gpt":0.1977230524215808,"score_spread":0.18773378419618475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131525103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9517523,0.0031347917,0.04315779,0.00023855854,0.00045631372,0.0002517358,0.00012333972,0.00002233156,0.0008628506],"genre_scores_gemma":[0.9958148,0.0001564879,0.003060934,0.00029398233,0.00021537366,0.000020318092,0.00015550705,0.00004278462,0.00023980919],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99849844,0.000118303324,0.00042335753,0.00042393533,0.00021756395,0.00031839375],"domain_scores_gemma":[0.9990467,0.000011776552,0.00022387995,0.00051706174,0.00010081729,0.00009978797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003073983,0.0002485622,0.00042783425,0.00007588299,0.00007503777,0.00004325779,0.00029398306,0.00015906975,0.000008981541],"category_scores_gemma":[0.00012372523,0.00022428644,0.00017841473,0.0001422202,0.00010792414,0.0000050139993,0.0002110996,0.00008189695,0.00000507643],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055075172,0.00004450236,0.0004003434,0.000047390087,0.00020149062,0.0000015269658,0.000022039832,0.000017901062,0.9927774,0.004386818,0.001364512,0.00068099727],"study_design_scores_gemma":[0.00069406594,0.00027567105,0.00016699028,0.00003000635,0.000040529427,0.0000076032948,0.00011070074,0.00010470821,0.9596786,0.00009134563,0.03854328,0.00025649852],"about_ca_topic_score_codex":0.00009239257,"about_ca_topic_score_gemma":0.000009039904,"teacher_disagreement_score":0.044062514,"about_ca_system_score_codex":0.000007677014,"about_ca_system_score_gemma":0.000023974852,"threshold_uncertainty_score":0.9146136},"labels":[],"label_agreement":null},{"id":"W2136903085","doi":"10.1039/c4mb00123k","title":"Informative Bayesian Model Selection: a method for identifying interactions in genome-wide data","year":2014,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Selection (genetic algorithm); Bayesian probability; Computational biology; Genome; Key (lock); Genome-wide association study; Computer science; Biology; Machine learning; Artificial intelligence; Genetics; Gene; Single-nucleotide polymorphism; Genotype","score_opus":0.04108746734389481,"score_gpt":0.34930174491366084,"score_spread":0.30821427756976605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136903085","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.059984677,0.00012342125,0.93799174,0.00033039844,0.00015659974,0.0004330577,0.00006730283,0.00001572064,0.00089709513],"genre_scores_gemma":[0.9012293,0.000012061203,0.09689647,0.000541436,0.00011853643,0.00012807322,0.00077683496,0.000025466274,0.00027180032],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99839616,0.00026542408,0.00047256466,0.00045166328,0.000092693546,0.00032149785],"domain_scores_gemma":[0.9989638,0.00007067482,0.00020458738,0.00057110406,0.00011826431,0.000071593255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012240041,0.00016945037,0.00025825627,0.00012410023,0.000114137285,0.000039075578,0.00036773,0.00013824484,0.0000047079743],"category_scores_gemma":[0.0006071188,0.00017563775,0.00009333664,0.00016435114,0.000019670664,0.0000128514375,0.00019978514,0.00010818288,0.0000071930594],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096116855,0.00014642734,0.01887137,0.00022181358,0.00042241137,0.0000016593511,0.000557185,0.076420546,0.8924267,0.0012373287,0.0065805824,0.00301783],"study_design_scores_gemma":[0.00078594184,0.00011863044,0.00247328,0.000030902153,0.000042734267,0.000023048562,0.0002559429,0.9521337,0.0130031295,0.00070870435,0.030077135,0.00034683096],"about_ca_topic_score_codex":0.000095252784,"about_ca_topic_score_gemma":0.0005959434,"teacher_disagreement_score":0.8794236,"about_ca_system_score_codex":0.000046992867,"about_ca_system_score_gemma":0.00007451123,"threshold_uncertainty_score":0.71623},"labels":[],"label_agreement":null},{"id":"W2140566350","doi":"10.1039/c2mb25107h","title":"A novel calcineurin-independent activity of cyclosporin A in <b> <i>Saccharomyces cerevisiae</i> </b>","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Signaling Pathways in Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto; University of New Brunswick","funders":"Canadian Institutes of Health Research","keywords":"Calcineurin; Saccharomyces cerevisiae; Computational biology; Biology; Chemistry; Biochemistry; Yeast; Medicine; Transplantation; Internal medicine","score_opus":0.013718078430799308,"score_gpt":0.25600334158592564,"score_spread":0.24228526315512633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140566350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99376816,0.002637063,0.0022488204,0.000042797245,0.00030595178,0.00039870493,0.00006244561,0.000018361154,0.0005177094],"genre_scores_gemma":[0.99924636,0.000019105526,0.0003025347,0.00007161968,0.00018082935,0.00005201795,0.00002983235,0.000045124532,0.000052600375],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99835074,0.00012548693,0.0003634424,0.00039401092,0.00031813412,0.0004481636],"domain_scores_gemma":[0.9988984,0.000012809262,0.00019831544,0.0006380332,0.000063195395,0.00018925502],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004447674,0.0002498928,0.0003124166,0.000081682185,0.000024417053,0.000013386431,0.00030718246,0.00019858622,0.000012039873],"category_scores_gemma":[0.000103652725,0.00025048765,0.00018341522,0.0002106328,0.00005130581,0.000007974089,0.0001742241,0.00011899666,0.000010785387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000083557126,0.00042187012,0.031178873,0.00014616603,0.000043386943,0.0000133591175,0.000046740788,0.000046476453,0.96761936,0.000109066095,0.00007257111,0.0002185926],"study_design_scores_gemma":[0.00084465713,0.00009669357,0.0057245637,0.00008522415,0.000024730281,0.00004670117,0.000040801326,0.000023688264,0.9915383,0.0000045767533,0.0013037991,0.0002662733],"about_ca_topic_score_codex":0.00016889842,"about_ca_topic_score_gemma":0.000019219497,"teacher_disagreement_score":0.02545431,"about_ca_system_score_codex":0.0000352301,"about_ca_system_score_gemma":0.000072190385,"threshold_uncertainty_score":0.99999475},"labels":[],"label_agreement":null},{"id":"W2141676859","doi":"10.1039/c2mb90047e","title":"Simplifying the author and reader experience","year":2012,"lang":"en","type":"editorial","venue":"Molecular BioSystems","topic":"Academic Writing and Publishing","field":"Arts and Humanities","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Computer science; Data science; Epistemology; Cognitive science; Psychology; Philosophy","score_opus":0.03209280645605834,"score_gpt":0.2730011963643969,"score_spread":0.24090838990833857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141676859","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002246734,0.01155632,0.00007205735,0.00070350326,0.96310085,0.0003376796,0.00016468634,0.0001682525,0.021649899],"genre_scores_gemma":[0.22442427,0.000028400793,0.000008584778,0.0001481517,0.76907647,0.000060581147,0.00009818446,0.0000621634,0.006093167],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979667,0.00019433144,0.0003705338,0.00036872263,0.00065374636,0.00044595735],"domain_scores_gemma":[0.9987137,0.00037551954,0.00025527002,0.00039188933,0.00015176661,0.000111900794],"candidate_categories":["scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.00091963616,0.00030253292,0.00031879905,0.00007169027,0.0006074473,0.001198507,0.0004890329,0.0005544948,0.00010906874],"category_scores_gemma":[0.00057943194,0.00020204582,0.000094464835,0.00003579054,0.00025770403,0.00023180095,0.00016849379,0.0010477488,0.00003813236],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000002417162,0.0000048708257,0.000006964131,0.00017190845,0.000030687657,0.000006334852,0.03192651,1.0924231e-7,0.00018200134,0.008436082,0.95897156,0.0002605751],"study_design_scores_gemma":[0.000077452336,0.000012007412,5.734877e-7,0.0002649813,0.000047962825,0.000005455885,0.008498992,0.00001090748,0.000054655462,0.00007294646,0.99066895,0.00028512152],"about_ca_topic_score_codex":0.00079848134,"about_ca_topic_score_gemma":0.000041494433,"teacher_disagreement_score":0.22217755,"about_ca_system_score_codex":0.00003769644,"about_ca_system_score_gemma":0.000059208567,"threshold_uncertainty_score":0.99983835},"labels":[],"label_agreement":null},{"id":"W2141702186","doi":"10.1039/c4mb00566j","title":"A transcriptomic analysis for identifying the unintended effects of introducing a heterologous glyphosate-tolerant EPSP synthase into <i>Escherichia coli</i>","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Weed Control and Herbicide Applications","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"National Natural Science Foundation of China","keywords":"Heterologous; Escherichia coli; Transcriptome; Biology; Glyphosate; ATP synthase; Computational biology; Microbiology; Genetics; Biotechnology; Gene; Gene expression","score_opus":0.018119827165475878,"score_gpt":0.23756173880130488,"score_spread":0.219441911635829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141702186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9863419,0.0014073558,0.009087761,0.0018932852,0.00015847296,0.0010024714,0.00002546054,0.000053321757,0.000030002544],"genre_scores_gemma":[0.9989512,0.0000019526967,0.00018244529,0.00036614254,0.00009972399,0.00032475338,0.000051525592,0.0000028788359,0.000019384146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99853766,0.00020002059,0.0003907041,0.00036903744,0.0002212617,0.00028129618],"domain_scores_gemma":[0.99915135,0.00017754959,0.00018899291,0.00019528471,0.00016666861,0.00012017102],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005159938,0.0001794272,0.00042820355,0.000036958852,0.00016761539,0.000075862714,0.00040171485,0.00009934348,0.0000043724094],"category_scores_gemma":[0.00008733737,0.000069417365,0.00036813892,0.0007795287,0.000087494875,0.000046633875,0.000038056616,0.00009531263,0.0000056581216],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007454331,0.000056383742,0.00012368834,0.00005392341,0.0003617413,0.0000039532306,0.0004262618,0.00013465111,0.997326,0.0004902017,0.00005456962,0.000894079],"study_design_scores_gemma":[0.0022498786,0.0011401644,0.011394074,0.00015602427,0.0025495705,0.000013397778,0.00232465,0.02042022,0.9514039,0.0023724919,0.005250825,0.0007248166],"about_ca_topic_score_codex":0.0054926816,"about_ca_topic_score_gemma":0.0016562225,"teacher_disagreement_score":0.045922115,"about_ca_system_score_codex":0.000037687063,"about_ca_system_score_gemma":0.00001652708,"threshold_uncertainty_score":0.8303328},"labels":[],"label_agreement":null},{"id":"W2141933676","doi":"10.1039/c2mb25151e","title":"Large scale phosphoproteome analysis of LNCaP human prostate cancer cells","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency","funders":"National Institutes of Health; National Cancer Institute; National Institute for Health and Care Research; Canadian Institutes of Health Research; Cedars-Sinai Medical Center","keywords":"LNCaP; Phosphorylation; Androgen receptor; Prostate cancer; Biology; Proteomics; Kinase; Signal transduction; Phosphoprotein; Phosphoproteomics; Protein kinase B; Cancer cell; Protein phosphorylation; Cancer research; Cancer; Chemistry; Cell biology; Biochemistry; Protein kinase A; Genetics","score_opus":0.006685658010769681,"score_gpt":0.2744052578980515,"score_spread":0.2677195998872818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141933676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98810565,0.0010027696,0.007963875,0.000029846286,0.000029853767,0.00034088115,0.00046394,0.00010814977,0.001955009],"genre_scores_gemma":[0.99627453,0.00003615852,0.0023659065,0.000030569532,0.00004609716,0.00048309154,0.000081109974,0.000034893885,0.0006476211],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988045,0.000015104707,0.00035949817,0.00025398098,0.00019992412,0.000366986],"domain_scores_gemma":[0.9989411,0.0000064208843,0.00026314115,0.0005946024,0.00008117409,0.000113551745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001565323,0.00016734313,0.0003380956,0.0001031939,0.00009065153,0.000015423208,0.00021654708,0.00012193537,0.00037361306],"category_scores_gemma":[0.0000030237538,0.00016340127,0.00021480476,0.0005482633,0.00003752363,0.00005569134,0.00007854605,0.000116707066,0.000009866215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000042442184,0.00010581203,0.0054799314,0.00012182645,0.00023203826,8.162366e-7,0.00028176786,0.000052937903,0.9928589,0.0007493901,0.000056077628,0.000056262572],"study_design_scores_gemma":[0.00015300044,0.0000065957925,0.000065845976,0.000042671836,0.00028014224,6.597701e-7,0.00015429096,0.00022490116,0.9933227,0.000057183403,0.005500333,0.00019171997],"about_ca_topic_score_codex":0.00020781803,"about_ca_topic_score_gemma":0.000024772178,"teacher_disagreement_score":0.008168877,"about_ca_system_score_codex":0.00006950401,"about_ca_system_score_gemma":0.000013949478,"threshold_uncertainty_score":0.66633105},"labels":[],"label_agreement":null},{"id":"W2142618329","doi":"10.1039/b600186f","title":"Conformational chemistry of surface-attached calmodulin detected by acoustic shear wave propagation","year":2006,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Acoustic Wave Resonator Technologies","field":"Engineering","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Calmodulin; Chemistry; Monolayer; Peptide; Slip (aerodynamics); Ion; Molecule; Biotinylation; Calcium; Biophysics; Avidin; Chemical physics; Analytical Chemistry (journal); Biochemistry; Chromatography; Organic chemistry; Physics","score_opus":0.004271141024264732,"score_gpt":0.17944118540421644,"score_spread":0.1751700443799517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142618329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8926383,0.0007943517,0.10466624,0.000018665758,0.00007726673,0.00029803978,0.00011438752,0.0005445788,0.000848155],"genre_scores_gemma":[0.9988808,0.0000033934527,0.00084550993,0.0000022569964,0.000020980278,0.000016255233,0.00014057524,0.000036284415,0.000053947402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988754,0.000016933445,0.00040944747,0.00015132283,0.0003168727,0.00023005765],"domain_scores_gemma":[0.9994911,0.00002405768,0.00008994255,0.0002568296,0.000103560364,0.000034493725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009934413,0.00018402115,0.00021939179,0.000043122316,0.000027531994,0.000019491723,0.00013704672,0.00024082574,0.000021638178],"category_scores_gemma":[0.00005380743,0.00018722453,0.00005678349,0.00021080252,0.00006266639,0.000050167928,0.000026770691,0.0001403089,0.000012865844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000027044118,0.0000143142115,0.000072441915,0.00039434867,0.000023445431,0.000008432969,0.000009675047,0.055304565,0.9435583,0.00003306374,0.00049107114,0.00008763957],"study_design_scores_gemma":[0.00020470134,0.000010971075,0.00015673281,0.000042151547,0.000014809077,0.000019085022,0.00004583814,0.2696494,0.7295336,0.000024651514,0.00014768665,0.00015037316],"about_ca_topic_score_codex":0.00003274856,"about_ca_topic_score_gemma":0.0000011341078,"teacher_disagreement_score":0.21434483,"about_ca_system_score_codex":0.00012688352,"about_ca_system_score_gemma":0.000023167873,"threshold_uncertainty_score":0.76347953},"labels":[],"label_agreement":null},{"id":"W2145457496","doi":"10.1039/c0mb00061b","title":"Coevolution of PDZ domain–ligand interactions analyzed by high-throughput phage display and deep sequencing","year":2010,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"PDZ domain; Computational biology; Biology; Phage display; Cooperativity; Peptide library; Peptide; Binding site; Evolutionary biology; Peptide sequence; Genetics; Gene; Biochemistry","score_opus":0.0025671966740937356,"score_gpt":0.21933178909180173,"score_spread":0.21676459241770799,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145457496","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9581799,0.0010015124,0.03980308,0.000052714513,0.00030084475,0.00024801827,0.00008703147,0.000013937862,0.00031299546],"genre_scores_gemma":[0.9971299,0.000036632813,0.0023130835,0.00006223829,0.000102144375,0.000017813394,0.00023963102,0.000024433666,0.00007413028],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893147,0.00006344105,0.00029184925,0.00036325312,0.00014117999,0.00020883848],"domain_scores_gemma":[0.9992905,0.0000087370445,0.00017385113,0.0003490706,0.000087942724,0.000089894114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015742987,0.00018593678,0.00021894589,0.000053346062,0.00008762223,0.000030561594,0.0001394973,0.0001996002,0.0000059015274],"category_scores_gemma":[0.000045248977,0.00017283436,0.000084065134,0.000111521265,0.00011772796,0.000008566119,0.00008864447,0.00015243511,0.000001960478],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028711822,0.00001683816,0.0004124041,0.000045456916,0.00008173067,0.000008366837,0.000046007597,0.000011704287,0.99819756,0.0007903644,0.00009912508,0.00026174454],"study_design_scores_gemma":[0.00060866034,0.00011290588,0.00027185358,0.000024524797,0.0000442684,0.00014076056,0.00009142968,0.00055911567,0.99408215,0.00030590163,0.0035290925,0.00022930925],"about_ca_topic_score_codex":0.0002280517,"about_ca_topic_score_gemma":0.00023267894,"teacher_disagreement_score":0.038950026,"about_ca_system_score_codex":0.000019974239,"about_ca_system_score_gemma":0.00003672522,"threshold_uncertainty_score":0.70479804},"labels":[],"label_agreement":null},{"id":"W2152575451","doi":"10.1039/c5mb00654f","title":"Comparative proteomic profiling of Hodgkin lymphoma cell lines","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Excellence in Mining Innovation","funders":"","keywords":"Biology; Blot; Flow cytometry; Proteomics; Pathogenesis; Cell culture; Lymphoma; Cell; Gene expression profiling; Cytoskeleton; Computational biology; Cell biology; Molecular biology; Gene expression; Genetics; Gene; Immunology","score_opus":0.03649296891045664,"score_gpt":0.29031746377187406,"score_spread":0.25382449486141745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152575451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909637,0.0027774663,0.00010315676,0.00013115203,0.00015879341,0.0012670096,0.000016276388,0.000044046777,0.004538376],"genre_scores_gemma":[0.99720955,0.000007890054,0.0023387005,0.00005838552,0.000070236325,0.00013655396,0.000041266903,0.000019046103,0.000118391865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988272,0.000081698076,0.00033584508,0.000249315,0.00031833243,0.0001875717],"domain_scores_gemma":[0.9990989,0.000015736252,0.00016211647,0.00032648497,0.000221255,0.00017549169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016248423,0.00017772094,0.0004961392,0.00008926385,0.000021444517,0.0000142937915,0.000075080476,0.000084383595,0.0000039605043],"category_scores_gemma":[0.0000243239,0.00013355124,0.00012490603,0.00017381662,0.000041563893,0.000026945345,0.00003621096,0.000028823022,0.000069530906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025850983,0.0013770447,0.050797414,0.00048447726,0.00032156543,0.00034798274,0.00082940457,0.00003737586,0.9438943,0.00033177083,0.0007929613,0.00052717596],"study_design_scores_gemma":[0.004092315,0.0006335933,0.0019705216,0.00020260001,0.00013049813,0.000045872515,0.00031857644,0.000415251,0.9913506,0.000015813866,0.0006998973,0.00012448554],"about_ca_topic_score_codex":0.00017614066,"about_ca_topic_score_gemma":0.0000026489945,"teacher_disagreement_score":0.048826892,"about_ca_system_score_codex":0.00014773096,"about_ca_system_score_gemma":0.00023953037,"threshold_uncertainty_score":0.54460615},"labels":[],"label_agreement":null},{"id":"W2154411047","doi":"10.1039/c1mb05094j","title":"Implementing an OR–NOT (ORN) logic gate with components of the SOS regulatory network of <i>Escherichia coli</i>","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministerio de Ciencia e Innovación; Petroleum Technology Research Centre","keywords":"Repressor lexA; Synthetic biology; Escherichia coli; Plasmid; Biology; Computational biology; SOS response; Computer science; Genetics; DNA; Gene","score_opus":0.020155575243022736,"score_gpt":0.2231818589156459,"score_spread":0.20302628367262315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154411047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972921,0.00055679696,0.0011361637,0.000014073747,0.000118440956,0.00042905795,0.000017177741,0.000013688203,0.00042249358],"genre_scores_gemma":[0.9981413,0.000013163492,0.0013472608,0.00016052443,0.00010372877,0.00002061742,0.000053210442,0.00005269651,0.00010751433],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976805,0.00039413318,0.00059109007,0.00046368467,0.00036974187,0.00050086237],"domain_scores_gemma":[0.99783677,0.0000063839684,0.00062712235,0.0012063615,0.00021334861,0.000110024994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062560703,0.00028165488,0.00042716626,0.000034070024,0.00012666208,0.000011619569,0.0005761741,0.00017101079,0.000024196199],"category_scores_gemma":[0.000012339055,0.00018926938,0.00023542996,0.00038836282,0.00019405485,0.000005434761,0.00027763768,0.00008909717,0.0000015400842],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028027373,0.00009452498,0.014152588,0.00009183228,0.000544096,0.0000069179755,0.00007368349,0.0012700091,0.983015,0.00027538373,0.000119742224,0.00007593799],"study_design_scores_gemma":[0.000711893,0.0005049876,0.017374255,0.00011665684,0.0002570756,0.000020293159,0.00015403156,0.0005226676,0.97819835,0.00003583976,0.0017687287,0.00033519827],"about_ca_topic_score_codex":0.00013288777,"about_ca_topic_score_gemma":0.00022654256,"teacher_disagreement_score":0.0048166374,"about_ca_system_score_codex":0.000016872202,"about_ca_system_score_gemma":0.00010356432,"threshold_uncertainty_score":0.7718181},"labels":[],"label_agreement":null},{"id":"W2155244175","doi":"10.1039/b715242f","title":"Poly- <i>N</i> -acetylglucosamine and poly(glycerol phosphate) teichoic acid identification from staphylococcal biofilm extracts using excitation sculptured TOCSYNMR","year":2007,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Teichoic acid; Biofilm; Glycerol; Staphylococcus epidermidis; Microbiology; Chromatography; Phosphate; Bacteria; Chemistry; Biology; Biochemistry; Staphylococcus aureus","score_opus":0.01349143473562885,"score_gpt":0.2733024993221721,"score_spread":0.25981106458654324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155244175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91045964,0.017699149,0.06932585,0.0002156032,0.0005376077,0.0013146938,0.00010821463,0.00015113605,0.00018812387],"genre_scores_gemma":[0.99410456,0.00005909684,0.0045818244,0.00042365948,0.0002998547,0.000022860519,0.00027479543,0.000102609105,0.00013075428],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967384,0.00012089312,0.00097289274,0.00084332156,0.00066035084,0.0006641636],"domain_scores_gemma":[0.9980411,0.00008507625,0.00048078794,0.00072574505,0.00028567412,0.00038163306],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00068861595,0.00045645333,0.00060230604,0.0003296122,0.00019852175,0.00012746628,0.00018665964,0.0003977982,0.00003441464],"category_scores_gemma":[0.00021507371,0.0004542203,0.00020194276,0.0006661858,0.0001854313,0.00021873802,0.0000676607,0.00030382173,0.000042407133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005206235,0.00012858062,0.0041120853,0.00017651283,0.00014599452,0.00020905651,0.0002879022,0.000001924476,0.99081546,0.0001007691,0.00007691775,0.003424161],"study_design_scores_gemma":[0.0020963217,0.00013583986,0.036021758,0.00043592718,0.00022522017,0.00007010978,0.0005097213,0.00045196913,0.9583803,0.000043025455,0.0011698718,0.0004599393],"about_ca_topic_score_codex":0.00082476257,"about_ca_topic_score_gemma":0.00013398925,"teacher_disagreement_score":0.08364493,"about_ca_system_score_codex":0.00027323532,"about_ca_system_score_gemma":0.00011641181,"threshold_uncertainty_score":0.99979097},"labels":[],"label_agreement":null},{"id":"W2157686762","doi":"10.1039/c4mb00448e","title":"The yeast galactose network as a quantitative model for cellular memory","year":2014,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Human Frontier Science Program","keywords":"Galactose; Yeast; Computer science; Computational biology; Cellular metabolism; Biology; Cognitive science; Biochemistry; Metabolism; Psychology","score_opus":0.0190734078135089,"score_gpt":0.2883542499706485,"score_spread":0.2692808421571396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157686762","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001147484,0.9404263,0.056420535,0.000022815708,0.0012516278,0.0015033927,0.00007521246,0.000034320066,0.00015105029],"genre_scores_gemma":[0.0017557975,0.9911929,0.0010238386,0.000048903923,0.0017494723,0.00044938686,0.00065466156,0.00017868895,0.002946372],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977255,0.00025262244,0.0006044591,0.00073288847,0.0001746283,0.0005099044],"domain_scores_gemma":[0.9983947,0.000018655583,0.00038321334,0.0009507084,0.00014438076,0.00010832943],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00085642596,0.00053486595,0.00093587564,0.000054102304,0.00021552692,0.00009441656,0.00048346602,0.0005275029,0.0000012016585],"category_scores_gemma":[0.00022503105,0.0003748643,0.00077861024,0.00017215815,0.000073989875,0.000002008213,0.000114234856,0.00020463334,0.00003928493],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001635627,0.00012074236,2.03982e-7,0.026519462,0.0024961152,0.000013625386,0.00008495056,0.0063174516,0.61505693,0.005817447,0.03413649,0.30927303],"study_design_scores_gemma":[0.00016349634,0.00013659522,8.577131e-9,0.0012659151,0.00037442025,0.00003826705,0.000007723023,0.0016009099,0.006693779,0.0000401499,0.9892064,0.0004723803],"about_ca_topic_score_codex":0.000010628352,"about_ca_topic_score_gemma":0.000007682567,"teacher_disagreement_score":0.95506984,"about_ca_system_score_codex":0.000029615721,"about_ca_system_score_gemma":0.00019164896,"threshold_uncertainty_score":0.9998703},"labels":[],"label_agreement":null},{"id":"W2158221911","doi":"10.1039/c3mb70147f","title":"Extolling the benefits of molecular therapeutic lipidation","year":2013,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dairy Farmers of Ontario; University of Toronto","funders":"","keywords":"Lipid-anchored protein; Cytosol; Peptide; Small molecule; Chemistry; Biochemistry; Membrane; Membrane permeability; Protein targeting; Membrane protein; Cell biology; Biology; Enzyme; Autophagy","score_opus":0.038675260157931365,"score_gpt":0.29678848611859426,"score_spread":0.2581132259606629,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158221911","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0057148878,0.99063957,0.0014554595,0.00002141658,0.0004587205,0.0012391702,0.000055685556,0.000015134039,0.00039995954],"genre_scores_gemma":[0.026082337,0.9724146,0.00006859128,0.000104718485,0.00025693275,0.00025467965,0.00044948995,0.000103537706,0.00026508994],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974515,0.00040433017,0.00083412876,0.00062564237,0.00032622012,0.00035819993],"domain_scores_gemma":[0.9978092,0.00002683954,0.0006424844,0.0012242758,0.0002216572,0.00007558064],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032843492,0.0005425339,0.0009742094,0.0001305052,0.000073622665,0.00007881663,0.0008701472,0.0005917392,0.000024850036],"category_scores_gemma":[0.000044971996,0.0003648878,0.00079947617,0.00026314758,0.00008866125,0.0000047520475,0.00020413271,0.00022525578,0.00010510324],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010030402,0.00007219092,0.000003699479,0.005569442,0.0011797064,0.000008347703,0.00004089805,0.00008171767,0.22008014,0.0005715571,0.00063766126,0.7717446],"study_design_scores_gemma":[0.00016866406,0.00027548792,0.0000011097428,0.004081564,0.0007005362,0.00008299186,0.000055773908,0.000021732072,0.11260601,0.000022604036,0.88134164,0.0006419001],"about_ca_topic_score_codex":0.00004139199,"about_ca_topic_score_gemma":0.0000037657599,"teacher_disagreement_score":0.880704,"about_ca_system_score_codex":0.000024427865,"about_ca_system_score_gemma":0.00016296933,"threshold_uncertainty_score":0.9998803},"labels":[],"label_agreement":null},{"id":"W2164584673","doi":"10.1039/c2mb05440j","title":"Global analysis of protein phosphorylation networks in insulin signaling by sequential enrichment of phosphoproteins and phosphopeptides","year":2012,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"Canadian Institutes of Health Research","keywords":"Phosphorylation; Phosphopeptide; Proteome; Chemistry; Protein phosphorylation; Biochemistry; Phosphoprotein; Cell fractionation; Chromatography; Protein kinase A; Enzyme","score_opus":0.00612682625556974,"score_gpt":0.24436801974556047,"score_spread":0.23824119348999073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164584673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9475744,0.0067124376,0.044928137,0.00001005594,0.0000090865915,0.000477874,0.00007419171,0.000020687898,0.00019317072],"genre_scores_gemma":[0.9953007,0.000064895525,0.0042947265,0.0000064327255,0.000009996742,0.00022177715,0.000077353274,0.000013612483,0.000010471753],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987096,0.000030113955,0.000593031,0.00024277913,0.00017948948,0.0002449947],"domain_scores_gemma":[0.9992771,0.000012844879,0.00033073683,0.00027271328,0.000045335593,0.00006126063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028863968,0.0001572133,0.0003780534,0.00007755422,0.0000200905,0.000009768488,0.00012522224,0.00015873474,0.00003456392],"category_scores_gemma":[0.000013842484,0.00016808395,0.00009269876,0.00092277565,0.000047204358,0.00006494129,0.000062794694,0.00009747851,2.2593841e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036976762,0.0001984567,0.07549862,0.00010106865,0.0001266919,0.0000012839885,0.00007865254,0.003642023,0.918071,0.0011759418,0.0000020830598,0.0010672319],"study_design_scores_gemma":[0.00034010483,0.000017117916,0.0009448508,0.00014522207,0.00009502429,8.061248e-7,0.00007876841,0.006991222,0.991019,0.00013023426,0.00007325348,0.00016440575],"about_ca_topic_score_codex":0.001410671,"about_ca_topic_score_gemma":0.000054372405,"teacher_disagreement_score":0.07455377,"about_ca_system_score_codex":0.00012787142,"about_ca_system_score_gemma":0.000018601164,"threshold_uncertainty_score":0.6854264},"labels":[],"label_agreement":null},{"id":"W2168557659","doi":"10.1039/c1mb05195d","title":"Strigolactones as small molecule communicators","year":2011,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Plant Parasitism and Resistance","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Strigolactone; Biology; Function (biology); Endogeny; Botany; Allelopathy; Parasitic plant; Host (biology); Symbiosis; Arbuscular mycorrhizal fungi; Chemical communication; Ecology; Evolutionary biology; Genetics; Bacteria; Biochemistry; Gene; Arabidopsis; Germination; Mutant","score_opus":0.049587383839343885,"score_gpt":0.26336427393650663,"score_spread":0.21377689009716275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168557659","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019041024,0.98843426,0.0000020706811,0.000012608181,0.00025626147,0.00072690507,0.0003608709,0.00012816572,0.00817477],"genre_scores_gemma":[0.0032363893,0.9949258,0.00001946912,0.00005611492,0.00011557659,0.000081465354,0.00075897656,0.0000070336846,0.0007992072],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99757284,0.00054261845,0.00062372163,0.00057133386,0.00021107394,0.00047838528],"domain_scores_gemma":[0.99882895,0.00012759535,0.0004430514,0.00034734435,0.000042448803,0.00021061554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024307906,0.0005453024,0.001324854,0.000036844238,0.00018311334,0.00010938027,0.001349432,0.0005819286,0.00013999766],"category_scores_gemma":[0.000019951565,0.00019520077,0.0006706869,0.00045499826,0.000074245836,0.000033203083,0.00022036464,0.00035945783,0.0007627607],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015029791,0.00022971496,0.000010805672,0.0061476263,0.0004658826,0.00073061336,0.000031862422,3.9530036e-8,0.014124674,0.0030906748,0.0011221991,0.97403085],"study_design_scores_gemma":[0.00004018026,0.00007789739,0.0000067026976,0.004172938,0.00018626911,0.00017991243,0.000017814318,2.9129674e-7,0.00031724575,0.000018294602,0.9944513,0.0005311775],"about_ca_topic_score_codex":0.0006578878,"about_ca_topic_score_gemma":0.00034541503,"teacher_disagreement_score":0.99332905,"about_ca_system_score_codex":0.00004310092,"about_ca_system_score_gemma":0.000043105385,"threshold_uncertainty_score":0.9804},"labels":[],"label_agreement":null},{"id":"W2178290447","doi":"10.1039/c5mb00640f","title":"Molecular recognition features (MoRFs) in three domains of life","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Hospital Edmonton; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Three-domain system; Context (archaeology); Intrinsically disordered proteins; Biology; Archaea; Protein Data Bank (RCSB PDB); Computational biology; Chemistry; Biochemistry; Genetics; Bacteria","score_opus":0.010705639397842212,"score_gpt":0.22922400708501292,"score_spread":0.2185183676871707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2178290447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.985109,0.003691231,0.008113095,0.0001006982,0.00023598771,0.0004553811,0.000048132417,0.000018009025,0.002228487],"genre_scores_gemma":[0.99798214,0.000020156851,0.0013058925,0.00026522903,0.00009936654,0.000038242655,0.00022775933,0.00003862792,0.000022592783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998492,0.00013689834,0.00038328217,0.00040170903,0.0002970433,0.00028907252],"domain_scores_gemma":[0.9989551,0.000005324582,0.00016574354,0.00052952196,0.00016408437,0.00018022703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031934946,0.00022869575,0.00029555007,0.00012374474,0.000020533846,0.000021747614,0.00026658725,0.00031679278,0.000003048313],"category_scores_gemma":[0.00021894813,0.00022202867,0.00013551927,0.00023635464,0.00007066233,0.0000051119514,0.00011984734,0.00012577466,0.00000826912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001457672,0.00005011576,0.0022063593,0.00006687988,0.00006994572,0.00005551338,0.00004199979,0.00029473254,0.995289,0.00061158434,0.00022913245,0.00093894446],"study_design_scores_gemma":[0.00216078,0.00047224044,0.0015034827,0.00009586911,0.000035004865,0.00007336552,0.00016263843,0.00021187401,0.98963755,0.003563021,0.0015713571,0.0005127842],"about_ca_topic_score_codex":0.00019664443,"about_ca_topic_score_gemma":0.00029487137,"teacher_disagreement_score":0.012873153,"about_ca_system_score_codex":0.000028875138,"about_ca_system_score_gemma":0.00016237477,"threshold_uncertainty_score":0.90540665},"labels":[],"label_agreement":null},{"id":"W2181064420","doi":"10.1039/c5mb00572h","title":"Serum metabolomics uncovering specific metabolite signatures of intra- and extrahepatic cholangiocarcinoma","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Burnaby Hospital; Simon Fraser University","funders":"Division of Electrical, Communications and Cyber Systems","keywords":"Metabolomics; Metabolite; Metabolome; Biology; Computational biology; Cancer research; Internal medicine; Medicine; Bioinformatics","score_opus":0.014166810698234297,"score_gpt":0.24372928296517618,"score_spread":0.22956247226694187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2181064420","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93124425,0.047548395,0.019292114,0.00006575021,0.00042706254,0.0005768086,0.00008665044,0.000026047353,0.0007329351],"genre_scores_gemma":[0.9976338,0.00048596793,0.0013202252,0.00009705982,0.00015989963,0.00003159977,0.000083517596,0.00007220447,0.00011572977],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978256,0.00024209046,0.0004225722,0.0005902561,0.00048095154,0.00043850683],"domain_scores_gemma":[0.9985959,0.000011103249,0.00016284108,0.00069193396,0.0002495101,0.00028871285],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006143036,0.0003028706,0.00041467772,0.0001807206,0.000046529338,0.00006222868,0.0003283343,0.0003123179,0.0000074566788],"category_scores_gemma":[0.00012459491,0.000299843,0.00016451534,0.00030067336,0.000111019595,0.000009575446,0.0002644942,0.00020958213,0.000007307489],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010516487,0.000035103752,0.00018610104,0.0000805512,0.0001904827,0.00003477306,0.00007478237,0.00044351295,0.996682,0.0007416626,0.0002400292,0.0011858741],"study_design_scores_gemma":[0.0011556352,0.0002775674,0.0002976074,0.000037826823,0.00005739413,0.0000671617,0.0001509169,0.00032721195,0.97716004,0.00014799272,0.019995786,0.00032483923],"about_ca_topic_score_codex":0.000079163525,"about_ca_topic_score_gemma":0.000015218713,"teacher_disagreement_score":0.06638955,"about_ca_system_score_codex":0.00004083505,"about_ca_system_score_gemma":0.00015198317,"threshold_uncertainty_score":0.99994534},"labels":[],"label_agreement":null},{"id":"W2210851404","doi":"10.1039/c5mb00872g","title":"Coupling calcium dynamics and mitochondrial bioenergetic: an <i>in silico</i> study to simulate cardiomyocyte dysfunction","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Cardiac electrophysiology and arrhythmias","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Bioenergetics; Coupling (piping); In silico; Intracellular; Calcium; Mitochondrion; Dynamics (music); Biophysics; Calcium in biology; Biology; Cell biology; Chemistry; Biochemistry; Physics; Materials science","score_opus":0.015327472309936634,"score_gpt":0.27855859883237327,"score_spread":0.26323112652243663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2210851404","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99564004,0.00035806262,0.001564295,0.00018885336,0.00091826735,0.0011361002,0.000007772809,0.000071761795,0.00011485418],"genre_scores_gemma":[0.9991005,0.0000029441348,0.000107230844,0.00016576276,0.00041948305,0.000038904185,0.000043949745,0.000037724156,0.00008347661],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99843794,0.00014227109,0.0003052868,0.00050834,0.00027273962,0.00033340006],"domain_scores_gemma":[0.9990363,0.00001899076,0.00005101716,0.00043000415,0.00012421844,0.00033945497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030929517,0.00021844765,0.0005174131,0.00019499304,0.00005245557,0.000030662206,0.00005653191,0.00012495359,0.0000011227886],"category_scores_gemma":[0.00007190248,0.00020165283,0.00008992797,0.0003323258,0.00003356636,0.000050824743,0.00006125409,0.00018311896,0.00001630316],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019214755,0.00043227922,0.01165953,0.00007700572,0.00024965845,0.0022488062,0.00091804244,0.048581075,0.9331397,0.00013942037,0.00012875015,0.0005042548],"study_design_scores_gemma":[0.04148061,0.029762316,0.022696324,0.00067737425,0.0017817027,0.0025949478,0.012680584,0.69426686,0.18838958,0.0001459833,0.0022761445,0.003247557],"about_ca_topic_score_codex":0.00043136362,"about_ca_topic_score_gemma":0.00015213483,"teacher_disagreement_score":0.74475014,"about_ca_system_score_codex":0.00018469147,"about_ca_system_score_gemma":0.00008160703,"threshold_uncertainty_score":0.82231635},"labels":[],"label_agreement":null},{"id":"W2260187137","doi":"10.1039/c5mb00791g","title":"<i>In vitro</i> and <i>in vivo</i> biological characterization of the anti-proliferative potential of a cyclic trinuclear organotin( <scp>iv</scp> ) complex","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Organometallic Compounds Synthesis and Characterization","field":"Chemistry","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"Fundação para a Ciência e a Tecnologia","keywords":"In vivo; Cell cycle; Cytotoxicity; In vitro; Apoptosis; Cell growth; Cell culture; Cancer research; Chemistry; Cell cycle checkpoint; Biological activity; Biology; Biochemistry; Genetics","score_opus":0.008486463161573359,"score_gpt":0.19319415521771985,"score_spread":0.18470769205614648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2260187137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988642,0.00003945707,0.00020102733,0.0002049632,0.000078583136,0.00021474162,0.00018184463,0.000016229424,0.0001989859],"genre_scores_gemma":[0.99967045,0.000045266876,0.000019013056,0.000055853652,0.000049382033,0.000011556828,0.000020026006,0.000025479516,0.000102964805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984958,0.00015801372,0.0005898094,0.00032602675,0.00021411547,0.00021623915],"domain_scores_gemma":[0.9991375,0.0000657704,0.00038958527,0.00030748278,0.000057143683,0.00004249946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016751984,0.00019263996,0.00045288005,0.00009014138,0.00003464976,0.000021716993,0.00022637458,0.00016023076,0.000095301955],"category_scores_gemma":[0.000096311116,0.00012198951,0.000100897436,0.0002783499,0.00012615678,0.0000821243,0.000122034886,0.00007454338,0.0000027365716],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027731636,0.00012848638,0.00562344,0.000104161365,0.000024124736,0.0000063840184,0.00012198209,5.713791e-7,0.9937139,0.000062132516,0.0000029327216,0.00018415303],"study_design_scores_gemma":[0.00071961805,0.000019787965,0.020683067,0.00015273102,0.000013615216,0.000014492007,0.00006176413,0.00012692851,0.97760826,0.000014258231,0.0005110508,0.00007443861],"about_ca_topic_score_codex":0.000014651172,"about_ca_topic_score_gemma":0.0000018538243,"teacher_disagreement_score":0.016105652,"about_ca_system_score_codex":0.000036212346,"about_ca_system_score_gemma":0.00002571865,"threshold_uncertainty_score":0.4974588},"labels":[],"label_agreement":null},{"id":"W2281688700","doi":"10.1039/c6mb00038j","title":"Selectivity profile of afatinib for EGFR-mutated non-small-cell lung cancer","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Lung Cancer Treatments and Mutations","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Government of Northwest Territories","funders":"","keywords":"Afatinib; Lung cancer; Cancer research; Epidermal growth factor receptor; Biology; Oncology; Internal medicine; Computational biology; Genetics; Medicine; Erlotinib; Cancer","score_opus":0.009134115434847162,"score_gpt":0.30610422288215444,"score_spread":0.2969701074473073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2281688700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9764075,0.0009281666,0.016584989,0.0005576789,0.00025867592,0.0025583268,0.00028235075,0.0000518927,0.0023703882],"genre_scores_gemma":[0.9958188,0.000016788239,0.0009650606,0.00006724716,0.0000715219,0.00072915806,0.00004066622,0.000037768717,0.0022530048],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990681,0.00003178646,0.00024513074,0.0002706965,0.00015293629,0.00023134326],"domain_scores_gemma":[0.99920225,0.000043493084,0.00014820864,0.00025108218,0.00026183395,0.00009311748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010018178,0.00014659292,0.000299945,0.00007555095,0.00004605322,0.000007690644,0.000059092396,0.00008121578,0.000054277247],"category_scores_gemma":[0.000028579243,0.00009396149,0.00012757802,0.00018051089,0.000025095245,0.00003060543,0.000014943853,0.000034855155,0.000007116424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009797598,0.00018819269,0.012690958,0.000808536,0.00037063126,0.000013458247,0.00021964443,0.000003997873,0.98231214,0.00006550228,0.0015664856,0.0016624989],"study_design_scores_gemma":[0.004901218,0.00036119935,0.0023629614,0.000617222,0.00052311784,0.000009233043,0.00005189906,0.0006181307,0.9889934,0.0000097929205,0.0014015462,0.00015028042],"about_ca_topic_score_codex":0.00034023286,"about_ca_topic_score_gemma":0.000039968505,"teacher_disagreement_score":0.019411253,"about_ca_system_score_codex":0.00020075178,"about_ca_system_score_gemma":0.0003302375,"threshold_uncertainty_score":0.38316384},"labels":[],"label_agreement":null},{"id":"W2288810364","doi":"10.1039/c5mb00706b","title":"An updated evolutionary study of <i>Flaviviridae</i> NS3 helicase and NS5 RNA-dependent RNA polymerase reveals novel invariable motifs as potential pharmacological targets","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"International Game Technology (Canada)","funders":"","keywords":"Flaviviridae; Helicase; Biology; RNA polymerase; NS3; Virology; Genetics; RNA; Polymerase; Computational biology; Evolutionary biology; Hepatitis C virus; Virus; Gene","score_opus":0.008073544216707702,"score_gpt":0.26745975290625673,"score_spread":0.25938620868954904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2288810364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921954,0.00272493,0.001902203,0.0005484687,0.0002800049,0.0018193149,0.0002672473,0.000090212,0.00017220054],"genre_scores_gemma":[0.99846137,0.00003841126,0.00007522281,0.0006964653,0.00022325267,0.00010745093,0.00008074962,0.00004735349,0.00026974131],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99717414,0.00031716042,0.0006819164,0.0007468518,0.0006060858,0.0004738186],"domain_scores_gemma":[0.9982601,0.000029487539,0.0002642837,0.00061457074,0.0002401515,0.0005914005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038098122,0.00034111936,0.0006507837,0.0001466036,0.00012197115,0.000036643374,0.00022697939,0.00016690057,0.0003814874],"category_scores_gemma":[0.00006431987,0.00023845956,0.00015111477,0.00020806506,0.000084043626,0.00013085084,0.00013673976,0.00014277326,0.00003037155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017681607,0.003306259,0.001601947,0.00006401008,0.00046710912,0.0013701911,0.000045646055,0.000016749758,0.9897752,0.00014792044,0.00083436363,0.000602473],"study_design_scores_gemma":[0.063947454,0.016902067,0.013630222,0.00062960474,0.0044015115,0.0016037389,0.001808837,0.005775123,0.8883675,0.0001462475,0.0011180704,0.001669681],"about_ca_topic_score_codex":0.00064189546,"about_ca_topic_score_gemma":0.0000061847954,"teacher_disagreement_score":0.10140772,"about_ca_system_score_codex":0.000076968245,"about_ca_system_score_gemma":0.00013438998,"threshold_uncertainty_score":0.9724099},"labels":[],"label_agreement":null},{"id":"W2300466696","doi":"10.1039/c5mb00827a","title":"Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Hepatitis C virus research","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Hepatocellular carcinoma; Biology; Hepatitis C virus; Virus; Virology; Chromosome; Genetics; Gene","score_opus":0.015154663735347906,"score_gpt":0.2854037003596633,"score_spread":0.2702490366243154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2300466696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99416494,0.003615508,0.0002892279,0.000055278662,0.00006811233,0.001064972,0.00029728882,0.000013942576,0.0004307512],"genre_scores_gemma":[0.99858516,0.0010927795,0.000021162616,0.000012858221,0.000032835298,0.00014905877,0.000047899684,0.000030520958,0.000027696673],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99620736,0.0013190394,0.0012440268,0.00037170673,0.0005016416,0.00035623906],"domain_scores_gemma":[0.997887,0.00026592647,0.00049913296,0.00086491695,0.0003747237,0.000108308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011365098,0.0002137824,0.0013632695,0.0011183975,0.00002349296,0.0000067236774,0.00021883864,0.0002490753,0.00006394039],"category_scores_gemma":[0.0005497173,0.00014023673,0.00031917146,0.0025983024,0.00025533457,0.00006111608,0.000096668795,0.00015188572,0.00001077801],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040635372,0.00012332034,0.5504931,0.00015520786,0.00035489874,0.00003350545,0.000076089105,0.000007905378,0.4474478,0.0011251891,0.0000070923284,0.00013519924],"study_design_scores_gemma":[0.0015690217,0.00023792792,0.5013172,0.0009102408,0.00064636883,0.000029111607,0.00007874234,0.0024995615,0.4917091,0.00013129368,0.0006654717,0.0002059471],"about_ca_topic_score_codex":0.245849,"about_ca_topic_score_gemma":0.005769163,"teacher_disagreement_score":0.24007984,"about_ca_system_score_codex":0.00016635712,"about_ca_system_score_gemma":0.00016701025,"threshold_uncertainty_score":0.759173},"labels":[],"label_agreement":null},{"id":"W2311273768","doi":"10.1039/c5mb00850f","title":"Host genetics is associated with the gut microbial community membership rather than the structure","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto Public Health","funders":"National Natural Science Foundation of China; Royal Society of Chemistry; Royal Society","keywords":"Host (biology); Biology; Evolutionary biology; Microbial genetics; Computational biology; Microbial population biology; Genetics; Gene; Bacteria","score_opus":0.010612842986972132,"score_gpt":0.22638868333844323,"score_spread":0.2157758403514711,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2311273768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936544,0.00080861046,0.00024945586,0.003989297,0.00017318434,0.0005397312,0.0002611039,0.000019980687,0.00030424225],"genre_scores_gemma":[0.9960864,0.0000344587,0.000025801599,0.0025775973,0.00015986212,0.000009984193,0.00007456678,0.000056397388,0.00097493164],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979807,0.0008548598,0.00022581434,0.00030568423,0.00019316775,0.00043978242],"domain_scores_gemma":[0.9984186,0.000044744702,0.00019519468,0.0010985944,0.00015696358,0.00008587532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004865467,0.00028510846,0.00020945825,0.000024724211,0.00048504706,0.00007429363,0.00070528546,0.0002817598,0.00004833568],"category_scores_gemma":[0.00004673105,0.00012558034,0.00012804785,0.00015085563,0.0002629632,0.000002837156,0.00017381825,0.00027070203,0.000016959912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042849224,0.00003155659,0.0012885854,0.000016123427,0.00018450186,0.0000041369863,0.000357556,0.0000012799138,0.9908905,0.00003659746,0.0070701484,0.00007616639],"study_design_scores_gemma":[0.0011286276,0.0003680199,0.0062327334,0.00010534566,0.000083167295,0.00008750568,0.00043320644,0.000003334308,0.94790596,0.000023357694,0.04325585,0.0003729118],"about_ca_topic_score_codex":0.00015034882,"about_ca_topic_score_gemma":0.0016961235,"teacher_disagreement_score":0.042984556,"about_ca_system_score_codex":0.00004289589,"about_ca_system_score_gemma":0.00012937447,"threshold_uncertainty_score":0.51210177},"labels":[],"label_agreement":null},{"id":"W2430397844","doi":"10.1039/c6mb00237d","title":"Systems level analysis of the <i>Chlamydomonas reinhardtii</i> metabolic network reveals variability in evolutionary co-conservation","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biological and Environmental Research; Office of Science; Royal Society of Chemistry; National Institute of General Medical Sciences; Medical Research Council; Royal Society; U.S. Department of Energy; Gordon and Betty Moore Foundation; Life Sciences Research Foundation; New York University Abu Dhabi; York University","keywords":"Chlamydomonas reinhardtii; Biology; Metabolic network; Phylogenetic tree; Computational biology; Gene; Chlamydomonas; Gene regulatory network; Evolutionary biology; Robustness (evolution); Systems biology; Phylogenetics; Organism; In silico; Genetics","score_opus":0.009621159048174075,"score_gpt":0.2219121350399055,"score_spread":0.21229097599173144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2430397844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9827222,0.0027245716,0.012750849,0.0002464455,0.0007327697,0.0005024569,0.00017004894,0.00001741256,0.00013322702],"genre_scores_gemma":[0.9988707,0.00010181533,0.00018496175,0.00006940435,0.00025563804,0.000045436063,0.00006933936,0.000019989498,0.00038273906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977756,0.00063602306,0.0005975776,0.0004761354,0.00023498414,0.0002796569],"domain_scores_gemma":[0.99862176,0.000019596584,0.00025864207,0.0008804674,0.00017081335,0.000048709193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015589367,0.00019770136,0.0004253167,0.00013138965,0.00005383854,0.000013147286,0.00028136032,0.00021151247,0.0000051438983],"category_scores_gemma":[0.00033179397,0.00012780003,0.0002670235,0.0010280557,0.00008021354,0.000006644678,0.00007676428,0.00007170043,0.0000030520112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028505527,0.000035573506,0.032767694,0.000044268803,0.00037518344,7.6941205e-7,0.000008483859,0.0026844498,0.96199507,0.0008997013,0.001021307,0.00013902507],"study_design_scores_gemma":[0.0007742614,0.000056761506,0.17255342,0.00023014126,0.00059125235,0.000025988096,0.000017456092,0.00077779643,0.78745866,0.00006591284,0.036970682,0.0004776671],"about_ca_topic_score_codex":0.00030179127,"about_ca_topic_score_gemma":0.00004761598,"teacher_disagreement_score":0.17453638,"about_ca_system_score_codex":0.000038461683,"about_ca_system_score_gemma":0.00006487096,"threshold_uncertainty_score":0.5211534},"labels":[],"label_agreement":null},{"id":"W2442594711","doi":"10.1039/c6mb00240d","title":"Molecular and genetic inflammation networks in major human diseases","year":2016,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vertex Pharmaceuticals (Canada)","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Institute on Aging","keywords":"Inflammation; Computational biology; Biology; Genetic data; Bioinformatics; Medicine; Immunology","score_opus":0.0074786894030556515,"score_gpt":0.24954728213440358,"score_spread":0.24206859273134793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2442594711","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0026614617,0.990442,0.0050097536,0.000017152746,0.00024099431,0.0012649896,0.00007520031,0.000022833334,0.00026564408],"genre_scores_gemma":[0.025637427,0.9724683,0.00011533325,0.00005749521,0.0005045169,0.00024525303,0.0007263436,0.00013841383,0.00010688194],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972118,0.00027982623,0.0010497055,0.0007062504,0.00020579404,0.0005465865],"domain_scores_gemma":[0.99838185,0.000017195636,0.00049191166,0.0008471355,0.00005279537,0.00020907975],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020387712,0.0006521159,0.0010911474,0.00021988836,0.00008453024,0.00011979105,0.0004162097,0.00083431555,0.0000083109235],"category_scores_gemma":[0.000026446094,0.0005326052,0.00038592346,0.00019771927,0.00010585409,0.000005733868,0.00033754462,0.00022793071,0.00002043187],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020966976,0.000061317405,0.000084288185,0.011721802,0.00067906425,0.00034250534,0.000022315415,0.00014334529,0.012285924,0.0009990424,0.00063759094,0.97300184],"study_design_scores_gemma":[0.0010833741,0.00022177624,0.000023237297,0.010222054,0.0005042183,0.00023867548,0.000011121394,0.00027630044,0.0005425802,0.00018005581,0.985142,0.0015546337],"about_ca_topic_score_codex":0.00001409605,"about_ca_topic_score_gemma":0.00002252446,"teacher_disagreement_score":0.9845044,"about_ca_system_score_codex":0.00006041818,"about_ca_system_score_gemma":0.00011080247,"threshold_uncertainty_score":0.9997125},"labels":[],"label_agreement":null},{"id":"W2461695554","doi":"10.1039/c6mb00239k","title":"Mastitomics, the integrated omics of bovine milk in an experimental model of <i>Streptococcus uberis</i> mastitis: 1. High abundance proteins, acute phase proteins and peptidomics","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of California, San Diego; Biotechnology and Biological Sciences Research Council; University of Glasgow; Zoetis; Scottish Government; Rural and Environment Science and Analytical Services Division; Wellcome Trust; McGill University; Wellcome","keywords":"Streptococcus uberis; Lactoferrin; Mastitis; Serum amyloid A; Acute-phase protein; Proteomics; Haptoglobin; Biology; Biomarker; Peptide; Microbiology; Immunology; Andrology; Biochemistry; Bacteria; Streptococcus; Inflammation; Medicine","score_opus":0.01625143707704013,"score_gpt":0.242606737785758,"score_spread":0.22635530070871787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2461695554","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957166,0.0003596016,0.000977709,0.00035731072,0.000090663736,0.0013533144,0.00108638,0.000028198108,0.000030272706],"genre_scores_gemma":[0.9987734,0.000071794806,0.00076155865,0.00006044413,0.000052799103,0.00015334897,0.00006506224,0.0000043703276,0.00005723419],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99832475,0.00020140088,0.0005809171,0.00039023734,0.00023606178,0.0002666201],"domain_scores_gemma":[0.9992771,0.000043221757,0.00028841608,0.00020328692,0.00009769385,0.00009028359],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033694264,0.0002286447,0.00038655486,0.000026298281,0.00007076873,0.000033105123,0.00040932375,0.00014520306,0.000026806545],"category_scores_gemma":[0.000041670308,0.000085205254,0.00008240079,0.00020639379,0.00028487822,0.00015043584,0.0001355806,0.00010665517,0.000001702723],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026531442,0.0002813829,0.0004067988,0.000037147096,0.000022810973,0.000009161833,0.0001640641,0.000023044619,0.9946964,0.0015874035,0.000030006862,0.0024765045],"study_design_scores_gemma":[0.0014095473,0.001043901,0.00019567167,0.00029390273,0.000017072854,0.000009644387,0.00045913883,0.0020541106,0.99373287,0.00025840127,0.00028528325,0.00024046667],"about_ca_topic_score_codex":0.00074889424,"about_ca_topic_score_gemma":0.00092086615,"teacher_disagreement_score":0.0030568377,"about_ca_system_score_codex":0.000044578454,"about_ca_system_score_gemma":0.000033234133,"threshold_uncertainty_score":0.34745696},"labels":[],"label_agreement":null},{"id":"W2471042400","doi":"10.1039/c6mb00290k","title":"Mastitomics, the integrated omics of bovine milk in an experimental model of <i>Streptococcus uberis</i> mastitis: 2. Label-free relative quantitative proteomics","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Scottish Government; Rural and Environment Science and Analytical Services Division; Moredun Foundation; Wellcome Trust; Wellcome","keywords":"Streptococcus uberis; Mastitis; Proteomics; Streptococcus; Biology; Omics; Microbiology; Streptococcaceae; Computational biology; Bacteria; Bioinformatics; Genetics","score_opus":0.035640391761680795,"score_gpt":0.25794943341204984,"score_spread":0.22230904165036905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2471042400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952803,0.0003517455,0.0017564863,0.00036780257,0.00011789941,0.00085438567,0.0010343549,0.000025813453,0.00021120251],"genre_scores_gemma":[0.99763113,0.000027301581,0.0020550685,0.00005262298,0.000026408863,0.00007925002,0.000049060454,0.0000038034184,0.00007535818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981633,0.00035537264,0.00062239164,0.00034802302,0.00026187618,0.00024905952],"domain_scores_gemma":[0.99903893,0.00014750908,0.00033619435,0.00024481022,0.0001633074,0.00006925568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045563318,0.00021108284,0.00036667907,0.000029687342,0.000059747214,0.000019397088,0.00062726566,0.00015564759,0.00003494615],"category_scores_gemma":[0.00019912224,0.00007551061,0.00009994357,0.000301072,0.00028872248,0.00018544673,0.00018010678,0.00012456957,0.000003981724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018804359,0.00018925034,0.0010355995,0.000021220154,0.000022675767,0.0000048762695,0.00045328718,0.000062543346,0.98171186,0.015752492,0.00006486521,0.000493275],"study_design_scores_gemma":[0.0009524327,0.0013089927,0.00036617296,0.00034526637,0.000015126773,0.0000036409467,0.002136695,0.004503241,0.9880231,0.0019284863,0.00014721768,0.0002696031],"about_ca_topic_score_codex":0.0006149658,"about_ca_topic_score_gemma":0.0014841032,"teacher_disagreement_score":0.013824006,"about_ca_system_score_codex":0.00006288004,"about_ca_system_score_gemma":0.000036873927,"threshold_uncertainty_score":0.30792332},"labels":[],"label_agreement":null},{"id":"W2473094839","doi":"10.1039/c6mb00069j","title":"Autophagy-related intrinsically disordered proteins in intra-nuclear compartments","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Autophagy; Cell biology; Biology; Programmed cell death; Computational biology; Nuclear protein; Intrinsically disordered proteins; Transcription factor; Genetics; Biophysics; Gene; Apoptosis","score_opus":0.006129941851930765,"score_gpt":0.23773160902111223,"score_spread":0.23160166716918146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2473094839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941408,0.0006626111,0.0002456732,0.0014021656,0.00018894495,0.0012883272,0.0000144027745,0.00017966895,0.0018773844],"genre_scores_gemma":[0.99886745,0.000034330416,0.000121072495,0.00041114696,0.000043649557,0.00006790811,0.00001630024,0.000054046784,0.00038407606],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99831074,0.00013220754,0.00046819172,0.00038579665,0.0003324823,0.00037058358],"domain_scores_gemma":[0.9991142,0.000019612813,0.00010413607,0.00049833464,0.000053369615,0.00021035082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015877678,0.00022454365,0.00041687264,0.00016509625,0.00004238757,0.00002048344,0.00015455404,0.00016337467,0.000312529],"category_scores_gemma":[0.00005618483,0.00015196082,0.00014205788,0.00029259222,0.00008257317,0.00006034444,0.000049205046,0.00013088335,0.0004792746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036743973,0.000805218,0.0044086166,0.00011512979,0.00030484376,0.0011323096,0.00024876505,0.0000016459625,0.9784172,0.005237078,0.0003022022,0.008659545],"study_design_scores_gemma":[0.046778664,0.002880229,0.14894645,0.004260993,0.00031947624,0.00041789172,0.00028017434,0.0010439145,0.7464253,0.0038506854,0.042973313,0.0018229135],"about_ca_topic_score_codex":0.000038179238,"about_ca_topic_score_gemma":0.000006251097,"teacher_disagreement_score":0.23199192,"about_ca_system_score_codex":0.00012998373,"about_ca_system_score_gemma":0.000076298464,"threshold_uncertainty_score":0.61967826},"labels":[],"label_agreement":null},{"id":"W2475257508","doi":"10.1039/c6mb00289g","title":"Mastitomics, the integrated omics of bovine milk in an experimental model of <i>Streptococcus uberis</i> mastitis: 3. Untargeted metabolomics","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; University of Glasgow; Zoetis; Scottish Government; Rural and Environment Science and Analytical Services Division; Wellcome Trust; Wellcome","keywords":"Streptococcus uberis; Metabolomics; Metabolite; Mastitis; Biology; Metabolome; Udder; Biochemistry; Microbiology; Streptococcus; Bacteria; Bioinformatics; Genetics","score_opus":0.02135745875960163,"score_gpt":0.23122515050477346,"score_spread":0.20986769174517184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2475257508","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99730307,0.0005695829,0.00043060444,0.00023026367,0.00018265253,0.00044008074,0.0007056009,0.000027946819,0.00011017041],"genre_scores_gemma":[0.9993585,0.000048812428,0.00028876495,0.000092402646,0.000043924512,0.000035290574,0.00007821309,0.000003359605,0.00005074075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982954,0.00025628664,0.00062532246,0.00032352834,0.00023773748,0.00026172088],"domain_scores_gemma":[0.9992836,0.000076968456,0.00025207485,0.00020232388,0.00010795683,0.00007705029],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039929434,0.00020174272,0.0003833038,0.000028773356,0.00004725663,0.000018821826,0.00052452873,0.00014743763,0.00007577346],"category_scores_gemma":[0.00006165479,0.000069531176,0.00013087722,0.00028938692,0.00019405156,0.0001119889,0.00012012758,0.00009271907,0.0000038947633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000098795805,0.00014588839,0.0019453276,0.000014952392,0.000018128903,0.0000038179664,0.00012238816,0.00010980848,0.9942103,0.00203649,0.000068070374,0.0012260368],"study_design_scores_gemma":[0.00049166376,0.0003139219,0.00066913053,0.00011174643,0.000015175803,0.0000037374693,0.0008723117,0.0028038297,0.99351,0.00022167277,0.00077818154,0.00020860365],"about_ca_topic_score_codex":0.00071866775,"about_ca_topic_score_gemma":0.0011986909,"teacher_disagreement_score":0.0026940212,"about_ca_system_score_codex":0.000043347638,"about_ca_system_score_gemma":0.000029675111,"threshold_uncertainty_score":0.28353992},"labels":[],"label_agreement":null},{"id":"W2507059477","doi":"10.1039/c6mb00386a","title":"ICN: a normalization method for gene expression data considering the over-expression of informative genes","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Government of Northwest Territories","funders":"","keywords":"Normalization (sociology); Gene; Gene expression; Expression (computer science); Gene expression profiling; Biology; Computational biology; Microarray analysis techniques; Genetics; Microarray; DNA microarray; Bioinformatics; Computer science","score_opus":0.028898136946282193,"score_gpt":0.31032051598940685,"score_spread":0.28142237904312467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2507059477","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13491799,0.001415509,0.8621103,0.00023389183,0.0002610426,0.0006855677,0.00020366516,0.000018068256,0.00015396651],"genre_scores_gemma":[0.9858594,0.00017535259,0.013028061,0.00015214809,0.0001439458,0.00013860909,0.00033128157,0.000029861016,0.000141349],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985578,0.00019625975,0.0004164399,0.00039794788,0.0002359782,0.00019555778],"domain_scores_gemma":[0.9981667,0.00004506394,0.00037301157,0.0011706903,0.00018415021,0.000060376013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000527375,0.00017254484,0.00017838422,0.00006160728,0.00011687063,0.000026220085,0.00051091483,0.00015673424,0.000011241775],"category_scores_gemma":[0.0001652611,0.000098821234,0.000087016546,0.000109135224,0.00005510946,0.000021441703,0.00033871006,0.00003363223,0.0000020052507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008849548,0.000018773306,0.0002535346,0.00006304757,0.000024844541,2.96498e-7,0.00007212724,0.00004889326,0.99351925,0.000102947306,0.0028766165,0.0029311592],"study_design_scores_gemma":[0.0007071878,0.00007780304,0.00009766671,0.0001501856,0.00001865733,0.0000072299854,0.00014761573,0.00057344453,0.94539344,0.0000359446,0.05263999,0.0001508408],"about_ca_topic_score_codex":0.000012915133,"about_ca_topic_score_gemma":0.0000051461257,"teacher_disagreement_score":0.8509414,"about_ca_system_score_codex":0.000015254666,"about_ca_system_score_gemma":0.00008201194,"threshold_uncertainty_score":0.4029813},"labels":[],"label_agreement":null},{"id":"W2524137177","doi":"10.1039/c6mb00506c","title":"Molecular dynamics studies on the DNA-binding process of ERG","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kensington Health","funders":"Deutscher Akademischer Austauschdienst; British Heart Foundation","keywords":"DNA; Computational biology; Erg; Transcription factor; DNA binding site; DNA sequencing; Biology; Molecular dynamics; Genetics; Chemistry; Gene; Biochemistry; Promoter; Gene expression; Computational chemistry","score_opus":0.008038647519345883,"score_gpt":0.2548582040827169,"score_spread":0.24681955656337104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2524137177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99304914,0.00084446475,0.0037454793,0.0006601247,0.00029419916,0.00045483335,0.00007023769,0.000020703954,0.00086078484],"genre_scores_gemma":[0.9992463,0.000043417745,0.000076777455,0.00023101269,0.00007151747,0.000062434134,0.00002664826,0.00004461271,0.00019728042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99841976,0.00014129648,0.00037972635,0.00043393453,0.00032109357,0.0003042049],"domain_scores_gemma":[0.99870795,0.000032816606,0.00025343217,0.00073453534,0.00020747275,0.00006377746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033235154,0.00027177506,0.0002795696,0.00006621033,0.0000855356,0.000017325701,0.00043807598,0.00018811905,0.0000035556088],"category_scores_gemma":[0.00031321985,0.00015091943,0.00017550567,0.00017319962,0.00018166019,0.0000037618133,0.00013788616,0.00007895381,0.000009839226],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004605374,0.000022302504,0.00025785633,0.00008503917,0.00023718292,0.000018231764,0.00006441134,0.000055051398,0.9884263,0.0102739185,0.000057670073,0.00045596223],"study_design_scores_gemma":[0.00034180205,0.000267398,0.00001856176,0.00019131755,0.0000324407,0.000022683133,0.00032233653,0.00010280551,0.9972627,0.0008522705,0.00034525627,0.0002404039],"about_ca_topic_score_codex":0.0000036652602,"about_ca_topic_score_gemma":0.000014775577,"teacher_disagreement_score":0.0094216475,"about_ca_system_score_codex":0.000057998906,"about_ca_system_score_gemma":0.00009078979,"threshold_uncertainty_score":0.61543155},"labels":[],"label_agreement":null},{"id":"W2548181354","doi":"10.1039/c6mb00441e","title":"Probing oligomerization of amyloid beta peptide <i>in silico</i>","year":2016,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; National Institute for Nanotechnology; Alberta Hospital Edmonton; University of Alberta","funders":"Western Canada Research Grid; Compute Canada","keywords":"In silico; Amyloid (mycology); Peptide; BETA (programming language); Computational biology; Amyloid beta; Chemistry; Biochemistry; Bioinformatics; Biology; Computer science; Gene; Botany","score_opus":0.013697800938606234,"score_gpt":0.26912651426237283,"score_spread":0.2554287133237666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2548181354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99457824,0.0020381287,0.00029368853,0.00035400369,0.000038113107,0.0007050712,0.000024912428,0.000031010102,0.0019368349],"genre_scores_gemma":[0.9996416,0.000048163038,0.00007283267,0.000034680248,0.000026513002,0.000046677957,0.000027100443,0.000023828292,0.00007863353],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884623,0.000074398195,0.00026567382,0.0002269748,0.00033160398,0.00025509088],"domain_scores_gemma":[0.9993644,0.000020599726,0.00007571043,0.00030207395,0.00007926431,0.00015799851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012089716,0.000118110904,0.00025362422,0.00015174157,0.000018530945,0.000006928507,0.0000646318,0.000046394296,0.000026018914],"category_scores_gemma":[0.00003313337,0.00007727852,0.00007857061,0.00024108292,0.000047258276,0.00005019596,0.000029412346,0.00003856426,0.0000630256],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011063792,0.00026513176,0.043640334,0.00017846367,0.0006830167,0.00018326532,0.00003440862,0.0000011234386,0.95389307,0.000237255,0.000028720699,0.0007446007],"study_design_scores_gemma":[0.0033818143,0.0006654774,0.012552197,0.0012355057,0.00015773685,0.00003866661,0.000051676096,0.000045199806,0.98138964,0.000041972045,0.0002789682,0.00016112796],"about_ca_topic_score_codex":0.00009384859,"about_ca_topic_score_gemma":0.000007862542,"teacher_disagreement_score":0.031088136,"about_ca_system_score_codex":0.000070891205,"about_ca_system_score_gemma":0.00010213703,"threshold_uncertainty_score":0.31513265},"labels":[],"label_agreement":null},{"id":"W2556739841","doi":"10.1039/c6mb00639f","title":"Advancement of mass spectrometry-based proteomics technologies to explore triple negative breast cancer","year":2016,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatoon Medical Imaging; University of Saskatchewan","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Triple-negative breast cancer; Proteomics; Mass spectrometry; Breast cancer; Computational biology; Chemistry; Cancer; Computer science; Biology; Medicine; Chromatography; Internal medicine; Biochemistry","score_opus":0.029824587627287364,"score_gpt":0.3305014516303182,"score_spread":0.30067686400303084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2556739841","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000022622593,0.6749308,0.31890848,0.00034712502,0.00005869658,0.002861349,0.002247772,0.00040679835,0.0002163358],"genre_scores_gemma":[0.00034907606,0.87417287,0.114206225,0.000013518372,0.00007394707,0.010716137,0.000082923245,0.00014876162,0.0002365191],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99745077,0.00003689334,0.00092184334,0.0008015734,0.0003364898,0.00045241954],"domain_scores_gemma":[0.9973927,0.000047033747,0.00097071234,0.001312696,0.00018021776,0.00009659639],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000117404175,0.00062498427,0.0015551173,0.00031673218,0.00006920751,0.000027963382,0.0008838912,0.0004981567,0.00009605058],"category_scores_gemma":[0.000053494434,0.0004787347,0.00048216103,0.00071979826,0.00009822679,0.000038558686,0.00018441318,0.00031411,0.000026097554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000374219,0.00011884722,0.000002308603,0.025688957,0.00032750607,0.000018044908,0.00001790234,0.00001018881,0.5292786,0.001912213,0.00011751329,0.44247052],"study_design_scores_gemma":[0.00025062205,0.00003558817,1.5988904e-8,0.022060253,0.00014185953,0.00001141135,0.00004824894,0.000007717034,0.59426045,0.00041285667,0.38218808,0.00058291614],"about_ca_topic_score_codex":0.000026656593,"about_ca_topic_score_gemma":0.000001643839,"teacher_disagreement_score":0.44188762,"about_ca_system_score_codex":0.00068685296,"about_ca_system_score_gemma":0.00027101583,"threshold_uncertainty_score":0.9997664},"labels":[],"label_agreement":null},{"id":"W2567755524","doi":"10.1039/c6mb00795c","title":"The DNA target determines the dimerization partner selected by bHLHZ-like hybrid proteins AhRJun and ArntFos","year":2017,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Celiac Association; College of Family Physicians of Canada; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"DNA; Computational biology; Chemistry; Biology; Cell biology; Genetics; Evolutionary biology; Biochemistry","score_opus":0.003459194337441274,"score_gpt":0.20388696816492846,"score_spread":0.2004277738274872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2567755524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936176,0.0017297111,0.0026931134,0.0006616062,0.00026802707,0.0006806441,0.000056775414,0.000016223088,0.0002763212],"genre_scores_gemma":[0.9982257,0.00018635779,0.00013731096,0.00013761927,0.00012022232,0.00010969827,0.00018899837,0.000041047624,0.0008530747],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882233,0.000112773996,0.0002413611,0.00036105968,0.00015923279,0.00030325336],"domain_scores_gemma":[0.9985901,0.0000104999735,0.00026145513,0.0009488509,0.00011566737,0.00007343116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024139727,0.00021849133,0.00014833189,0.000013371967,0.0009471678,0.00039223925,0.0005300889,0.00010629698,0.0000017359322],"category_scores_gemma":[0.00011828074,0.00013844718,0.00006793882,0.000040967952,0.00019277389,0.0000056166487,0.00021793488,0.00007668204,0.000003843265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014383601,0.000016368054,0.0009442317,0.000019900108,0.00007098909,0.0000045272245,0.000020780159,0.0000095961905,0.9961963,0.0000655066,0.0021017545,0.00053565984],"study_design_scores_gemma":[0.00050501106,0.0001721837,0.0012786767,0.000024410523,0.000038582464,0.00007581538,0.000049382754,0.0049563977,0.8789487,0.000096719734,0.11348867,0.00036548046],"about_ca_topic_score_codex":0.000044061788,"about_ca_topic_score_gemma":0.00005747893,"teacher_disagreement_score":0.117247626,"about_ca_system_score_codex":0.00001051907,"about_ca_system_score_gemma":0.000049760045,"threshold_uncertainty_score":0.72849447},"labels":[],"label_agreement":null},{"id":"W2608663758","doi":"10.1039/c7mb00095b","title":"Characterization of the structure, dynamics and allosteric pathways of human NPP1 in its free form and substrate-bound complex from molecular modeling","year":2017,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre in Green Chemistry and Catalysis; Université Laval; PROTEO","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère de l'Économie, de la Science et de l'Innovation - Québec","keywords":"Allosteric regulation; Characterization (materials science); Dynamics (music); Molecular dynamics; Substrate (aquarium); Biological system; Substrate specificity; Chemistry; Computational biology; Biophysics; Biology; Nanotechnology; Computational chemistry; Materials science; Biochemistry; Psychology; Ecology; Enzyme","score_opus":0.02137213287756655,"score_gpt":0.24197549016594813,"score_spread":0.2206033572883816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2608663758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99699885,0.0004510029,0.0016408896,0.000058285445,0.000059070193,0.00029495914,0.00041499588,0.000002639925,0.000079304344],"genre_scores_gemma":[0.99953717,0.000056949466,0.00006079505,0.00002268421,0.000019319463,0.000007863869,0.00026450667,0.000019683897,0.000011047477],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991166,0.000049986924,0.00030656028,0.00027316026,0.00012799997,0.00012570401],"domain_scores_gemma":[0.9988334,0.0000017327732,0.00029371455,0.0007467418,0.00008915901,0.00003522987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008592702,0.00013975038,0.00019970644,0.000035172437,0.000115215844,0.00005732827,0.00034423845,0.0001344297,0.0000024424023],"category_scores_gemma":[0.000019436166,0.000119239136,0.0000477449,0.000037698952,0.00008498288,0.000010425373,0.00020400868,0.000056692297,7.543543e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000130594735,0.00001535051,0.0033402813,0.00006220027,0.000032020365,0.0000013823006,0.000052455078,0.000043661825,0.995214,0.0010386136,6.8665713e-7,0.00018630637],"study_design_scores_gemma":[0.00056964316,0.000060027553,0.032216586,0.00007027296,0.000023155426,0.0000042725424,0.00005949937,0.016545143,0.949837,0.0004579809,0.000009667998,0.00014674013],"about_ca_topic_score_codex":0.00029908412,"about_ca_topic_score_gemma":0.00048513254,"teacher_disagreement_score":0.04537697,"about_ca_system_score_codex":0.000014175512,"about_ca_system_score_gemma":0.00002922632,"threshold_uncertainty_score":0.48624307},"labels":[],"label_agreement":null},{"id":"W2734055568","doi":"10.1039/c7mb00360a","title":"Structural switch from a multistranded G-quadruplex to single strands as a consequence of point mutation in the promoter of the human <i>GRIN1</i> gene","year":2017,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Innovation Cluster (Canada)","funders":"University of Delhi","keywords":"Point mutation; Genetics; Gene; Mutation; Biology; G-quadruplex; Molecular biology; DNA","score_opus":0.013683746858947729,"score_gpt":0.2659795790999474,"score_spread":0.25229583224099966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2734055568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984247,0.00010240849,0.0001214803,0.0002901143,0.000085394735,0.00044209155,0.00008785241,0.000003714146,0.00044225194],"genre_scores_gemma":[0.9995445,0.0000015059803,0.00016989216,0.00010923837,0.00004954149,0.000018700171,0.000056943685,0.000015836386,0.000033850458],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988318,0.00009263246,0.000355544,0.000300422,0.00024417852,0.00017544309],"domain_scores_gemma":[0.9985852,0.000008826752,0.00029243223,0.00098809,0.00008251823,0.000042896685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018786624,0.00016313788,0.00020659762,0.000017743798,0.00011208113,0.000046319044,0.0007428956,0.00013957196,0.000008265412],"category_scores_gemma":[0.000099431796,0.00010855628,0.0001304183,0.00005298666,0.00016749493,0.000005228965,0.00011613274,0.000087679524,0.0000010790621],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050073544,0.000040918017,0.0013685888,0.000045494082,0.000038469763,0.000035464593,0.00030077854,0.00001568083,0.9979284,0.000017816437,0.000016713564,0.00014164839],"study_design_scores_gemma":[0.00083715573,0.00015229845,0.0068907263,0.000087482644,0.000022726712,0.000074842865,0.00019352123,0.000029318504,0.9913989,0.000120977886,0.000059416216,0.00013263611],"about_ca_topic_score_codex":0.0009196585,"about_ca_topic_score_gemma":0.00018803797,"teacher_disagreement_score":0.006529456,"about_ca_system_score_codex":0.000013832371,"about_ca_system_score_gemma":0.000047471407,"threshold_uncertainty_score":0.4426797},"labels":[],"label_agreement":null},{"id":"W2766575289","doi":"10.1039/c7mb00498b","title":"The nucleosomal surface is the main target of histone ADP-ribosylation in response to DNA damage","year":2017,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"PARP inhibition in cancer therapy","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institute of Environmental Health Sciences; Canadian Institutes of Health Research","keywords":"Histone; ADP-ribosylation; DNA damage; DNA repair; Nucleosome; DNA; Biology; Poly ADP ribose polymerase; Cell biology; NAD+ kinase; Biochemistry; Chemistry; Enzyme; Polymerase","score_opus":0.01509955947989242,"score_gpt":0.3346707639556706,"score_spread":0.31957120447577814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2766575289","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9698715,0.00051988824,0.00034224347,0.026865054,0.00031738193,0.0008696422,0.00004581389,0.000019774203,0.0011487093],"genre_scores_gemma":[0.9980145,0.000012079865,0.00025129694,0.00069705123,0.000061237755,0.00003195554,0.0000052463492,0.000030376548,0.0008962478],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983301,0.00038599115,0.00037862163,0.00024155252,0.0004228038,0.0002408947],"domain_scores_gemma":[0.9980969,0.00012408913,0.00025435357,0.0013432263,0.000101026795,0.0000804461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015857435,0.00014146304,0.00024771894,0.00006254432,0.0002813733,0.00006958557,0.00036827681,0.00008951233,0.000039869636],"category_scores_gemma":[0.0003016943,0.00009259928,0.0001000084,0.00015019641,0.00016068043,0.00006099599,0.00007013968,0.00014599456,0.000044481618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013016793,0.000035194433,0.0021165197,0.00003268278,0.000034356985,0.000051553132,0.00090524,0.000046737397,0.9931176,0.00031846183,0.0019340576,0.00010596762],"study_design_scores_gemma":[0.0026655872,0.00035212268,0.06312244,0.00047813388,0.000027390268,0.000036508132,0.0005900073,0.0008211916,0.8500302,0.00017635225,0.081483155,0.00021691613],"about_ca_topic_score_codex":0.00030642594,"about_ca_topic_score_gemma":0.00007248761,"teacher_disagreement_score":0.14308736,"about_ca_system_score_codex":0.000196779,"about_ca_system_score_gemma":0.00011537277,"threshold_uncertainty_score":0.37760893},"labels":[],"label_agreement":null}]}