{"meta":{"query_hash":"b926328eed30","filters":{"venue":"Nature Protocols"},"cohort_total":232,"direct_labels_cover":0,"predictions_cover":232,"exported":232,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/b926328eed30","api":"https://metacan.xera.ac/api/v1/cohort?venue=Nature+Protocols"},"results":[{"id":"W1193205310","doi":"10.1038/nprot.2015.090","title":"One-step 18F labeling of biomolecules using organotrifluoroborates","year":2015,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Radiopharmaceutical Chemistry and Applications","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Institutes of Health","keywords":"Chemistry; Biomolecule; Moiety; Combinatorial chemistry; Click chemistry; Positron emission tomography; Radiochemistry; Aqueous solution; Isotopic labeling; Pet imaging; Organic chemistry; Biochemistry; Nuclear medicine","score_opus":0.13578953995360216,"score_gpt":0.4476309667864214,"score_spread":0.31184142683281924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1193205310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.69166994,0.0035680837,0.009719213,0.007762947,0.00016024307,0.26294905,0.00014046958,0.00068345125,0.023346644],"genre_scores_gemma":[0.89572966,0.0000027253996,0.08859679,0.0005506651,0.0003277367,0.014558085,0.000027903616,0.00003681786,0.00016963886],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991737,0.000018108374,0.0002231798,0.00018210962,0.00024977457,0.00015309907],"domain_scores_gemma":[0.9991066,0.000030548617,0.000088744724,0.0002462517,0.0003420549,0.00018580265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016359283,0.0001016027,0.00022031376,0.000035055928,0.00003349816,0.000012410663,0.00010704496,0.00020381919,0.00003069671],"category_scores_gemma":[0.00025009963,0.000091016336,0.000045471952,0.0003977926,0.00006978867,0.00004386914,0.000029601637,0.00040552596,0.000010339697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014884159,0.0002204226,0.0010292162,0.0002781197,0.00003337207,0.000006650189,0.000028815732,0.0000125811475,0.9962093,0.00065595465,0.000352241,0.0010244471],"study_design_scores_gemma":[0.0013462878,0.00007114925,0.000060970484,0.00026388318,0.00005778349,0.000027893733,0.000028910252,0.00068263826,0.9841892,0.0002708978,0.012905987,0.000094409406],"about_ca_topic_score_codex":0.0000034608304,"about_ca_topic_score_gemma":1.6216103e-7,"teacher_disagreement_score":0.24839094,"about_ca_system_score_codex":0.00004854712,"about_ca_system_score_gemma":0.00019830943,"threshold_uncertainty_score":0.37115386},"labels":[],"label_agreement":null},{"id":"W1566831845","doi":"10.1038/nprot.2015.052","title":"NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data","year":2015,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1015,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Computer science; Visualization; Data visualization; Data mining; Visual analytics; Metadata; Graph drawing; Context (archaeology); Web application; Information retrieval; Bioinformatics; Biology; World Wide Web","score_opus":0.07714031460892924,"score_gpt":0.38767589301108807,"score_spread":0.31053557840215884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1566831845","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00077286165,0.004268358,0.9600426,0.00017084743,0.00007663051,0.032816578,0.0015906864,0.000016385615,0.00024504817],"genre_scores_gemma":[0.44114143,0.000019112971,0.5030744,0.002123724,0.0011157242,0.036484983,0.01571848,0.00007916868,0.0002429803],"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9987397,0.00007215699,0.00038981444,0.00037287344,0.00018685918,0.00023855043],"domain_scores_gemma":[0.99861693,0.0000643737,0.00024983956,0.0007288434,0.00019749734,0.00014253454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092831114,0.0001742011,0.000594244,0.000053636086,0.000055026994,0.00004006734,0.00034496057,0.0003693123,0.00001480797],"category_scores_gemma":[0.00010679077,0.0001296783,0.00020383623,0.00021838483,0.000069192414,0.00000651593,0.00019718803,0.00015469405,3.6088758e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0057904073,0.00087907584,0.005014527,0.00073110824,0.18442015,0.00000752362,0.00012231687,0.17375222,0.044330776,0.002609508,0.5707511,0.011591325],"study_design_scores_gemma":[0.0042403424,0.0017201266,0.00031641344,0.00003115033,0.09123041,0.000004218784,0.000042313117,0.5545475,0.03241027,0.0015463532,0.31290728,0.0010036158],"about_ca_topic_score_codex":0.0000042197235,"about_ca_topic_score_gemma":0.000035131932,"teacher_disagreement_score":0.45696822,"about_ca_system_score_codex":0.000005620962,"about_ca_system_score_gemma":0.000104449326,"threshold_uncertainty_score":0.5288127},"labels":[],"label_agreement":null},{"id":"W1968069908","doi":"10.1038/nprot.2013.157","title":"Structural and functional analysis of single neurons to correlate synaptic connectivity with grooming behavior","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Neuroscience; Neuron; Biology; Stimulation; Nerve net","score_opus":0.0364594422713973,"score_gpt":0.3211005407352893,"score_spread":0.284641098463892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968069908","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9770462,0.0000026914151,0.000023897974,0.0001331714,0.000042346353,0.022594042,0.00001775535,0.000029968045,0.0001099254],"genre_scores_gemma":[0.9754561,1.3465572e-7,0.00007189733,0.0004274229,0.000016130827,0.023953795,0.0000029132905,0.000009573689,0.0000620348],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987696,0.00021541498,0.00014930936,0.00045490416,0.00015780352,0.0002529758],"domain_scores_gemma":[0.99903786,0.0004541752,0.00008466149,0.0002306043,0.00010041742,0.00009228877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083038205,0.00013576093,0.00027394333,0.0002444836,0.00015873708,0.000029782132,0.00014760075,0.0001786531,0.00017231879],"category_scores_gemma":[0.0003690597,0.000096878786,0.00005340213,0.0007435763,0.00027058128,0.00018148491,0.000106750296,0.0006279746,0.000010814756],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023138648,0.00007072175,0.024362126,0.000012458765,0.000046661098,0.000007101874,0.00003232585,0.00008531602,0.9743381,0.00045929887,0.000038813374,0.0003156844],"study_design_scores_gemma":[0.00040204424,0.0010847189,0.73693955,0.0000148518875,0.00009731345,0.000043150627,0.0000065992404,0.0006565128,0.26044542,0.00014443853,0.000032754517,0.00013266287],"about_ca_topic_score_codex":0.00001730476,"about_ca_topic_score_gemma":0.00001805327,"teacher_disagreement_score":0.7138927,"about_ca_system_score_codex":0.000015272746,"about_ca_system_score_gemma":0.000029446303,"threshold_uncertainty_score":0.3950602},"labels":[],"label_agreement":null},{"id":"W1968414172","doi":"10.1038/nprot.2012.084","title":"High-throughput fluorescence-based isolation of live C. elegans larvae","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of General Medical Sciences; National Human Genome Research Institute","keywords":"Caenorhabditis elegans; Cell sorting; Biology; Genetic screen; Population; Selection (genetic algorithm); High-throughput screening; Computational biology; Sorting; Mutant; Identification (biology); Genetics; Computer science; Gene; Cell; Artificial intelligence","score_opus":0.010974415724104975,"score_gpt":0.2812882202175233,"score_spread":0.27031380449341835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968414172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86783105,0.0013299567,0.06041343,0.0006916382,0.00080464454,0.06787597,0.00013322206,0.000101178885,0.00081888906],"genre_scores_gemma":[0.97271925,0.000007161637,0.020757508,0.0003738091,0.0005782184,0.0052760444,0.000107671025,0.00003129284,0.00014904386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886173,0.000078956014,0.00024124874,0.00026562143,0.00022793708,0.00032449767],"domain_scores_gemma":[0.99912184,0.000012807857,0.0001614211,0.00042214102,0.00018635922,0.00009542099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025516175,0.00018557784,0.00018687347,0.000041316143,0.00006320627,0.000018684274,0.00024440093,0.000540727,0.000053418014],"category_scores_gemma":[0.00010072709,0.00017246517,0.000095685005,0.00008643076,0.000079462814,0.000009681615,0.00006563085,0.00028232907,0.00002130917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013452357,0.000312324,0.023975985,0.00014548475,0.000042627053,6.566543e-7,0.00033557264,0.00023486192,0.97046137,0.0004597654,0.00307252,0.00082428975],"study_design_scores_gemma":[0.0007864349,0.00036657153,0.009679241,0.00004737458,0.000022416496,0.0000024851456,0.00002338821,0.0001469253,0.96621025,0.00014851785,0.022329543,0.00023685608],"about_ca_topic_score_codex":0.000025176565,"about_ca_topic_score_gemma":0.000016545622,"teacher_disagreement_score":0.10488818,"about_ca_system_score_codex":0.000017669734,"about_ca_system_score_gemma":0.00009535357,"threshold_uncertainty_score":0.70329255},"labels":[],"label_agreement":null},{"id":"W1968615839","doi":"10.1038/nprot.2007.59","title":"Sequencing complete mitochondrial and plastid genomes","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"","keywords":"Genome; Biology; Heteroplasmy; Computational biology; Mitochondrial DNA; Genomics; DNA sequencing; Genetics; Evolutionary biology; Gene","score_opus":0.01708691119831738,"score_gpt":0.29178546929705923,"score_spread":0.27469855809874183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968615839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.959541,0.0029321376,0.0009795193,0.0001395745,0.00032705587,0.030063296,0.00005853945,0.000013493795,0.0059453803],"genre_scores_gemma":[0.9828945,0.00003462977,0.009854932,0.00050749147,0.0011193706,0.0052920575,0.000021642243,0.000027137643,0.0002482393],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991963,0.000016404865,0.00015515085,0.0002944065,0.00009511928,0.00024264368],"domain_scores_gemma":[0.99959886,0.000020081561,0.000057613248,0.00018473914,0.00006677174,0.00007191243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014761978,0.00014028953,0.00012938239,0.0000306094,0.00010638594,0.00002532622,0.00011858678,0.00024299284,0.00000432319],"category_scores_gemma":[0.00004998798,0.00012412696,0.00004389375,0.000046324076,0.000066791,5.7172554e-7,0.00012428022,0.00017496888,0.0000028187956],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014351336,0.000009957082,0.004881566,0.00001846319,0.00003809024,0.0000037970028,0.000041786865,0.0000053072977,0.9914162,0.00017115023,0.00088848075,0.0023816803],"study_design_scores_gemma":[0.0014068227,0.0004942737,0.030196637,0.000029886925,0.0000139386475,0.00004455009,0.00006967244,0.000011525854,0.2777314,0.00035189957,0.6892821,0.00036728467],"about_ca_topic_score_codex":0.000004102066,"about_ca_topic_score_gemma":0.00003298812,"teacher_disagreement_score":0.7136848,"about_ca_system_score_codex":0.000013942797,"about_ca_system_score_gemma":0.000041786607,"threshold_uncertainty_score":0.5061751},"labels":[],"label_agreement":null},{"id":"W1971431550","doi":"10.1038/nprot.2006.304","title":"High-throughput and sensitive assay to measure yeast cell growth: a bench protocol for testing genotoxic agents","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Génome Québec; Genome Canada","keywords":"Yeast; Saccharomyces cerevisiae; High-throughput screening; Population; Intracellular; Computational biology; Biology; Assay sensitivity; Cell; Chemistry; Cell biology; Biochemistry; Medicine","score_opus":0.028811545326462542,"score_gpt":0.33734585878224177,"score_spread":0.30853431345577925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971431550","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.021728393,0.0000217371,0.0027746109,0.00028386776,0.000039535775,0.9727274,0.00018472613,0.00003418891,0.0022055102],"genre_scores_gemma":[0.12970157,1.7292145e-7,0.017660327,0.00032021865,0.000613453,0.85067326,0.000054487075,0.00004937191,0.0009271591],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99808085,0.00011426023,0.0002612845,0.0006746414,0.0003702848,0.00049869966],"domain_scores_gemma":[0.9987153,0.00004012034,0.00009538018,0.00030153306,0.0006817083,0.00016599351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047584792,0.00027537884,0.00021219366,0.00007056416,0.00018083054,0.00009833914,0.00022779872,0.0004913461,0.0000068135714],"category_scores_gemma":[0.00037888356,0.00024049466,0.00007387082,0.00023153929,0.000056917364,0.000005970028,0.00022954134,0.0003402058,0.000011213729],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047240529,0.00016371862,0.0015123521,0.00031214688,0.000018699197,0.000007131914,0.000017553975,0.00004522546,0.985059,0.00008212802,0.0106095625,0.0017000547],"study_design_scores_gemma":[0.002139443,0.0009954924,0.0034761778,0.000107158696,0.000007761523,0.000014800233,0.000008677186,0.000090078815,0.9328735,0.00034924468,0.059607055,0.00033061957],"about_ca_topic_score_codex":0.000046664652,"about_ca_topic_score_gemma":0.000043604716,"teacher_disagreement_score":0.12205418,"about_ca_system_score_codex":0.000031841904,"about_ca_system_score_gemma":0.00016640483,"threshold_uncertainty_score":0.9807087},"labels":[],"label_agreement":null},{"id":"W1971557848","doi":"10.1038/nprot.2007.294","title":"Detergent resistance as a tool in membrane research","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":272,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Lipid raft; Raft; Membrane; Computational biology; Chemistry; Biology; Biophysics; Cell biology; Computer science; Biochemistry; Polymer","score_opus":0.02434389924782985,"score_gpt":0.40229462951671763,"score_spread":0.37795073026888776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971557848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9497743,0.00015430467,0.000029405213,0.0002308913,0.00014470915,0.03907071,0.000008141996,0.000020286787,0.010567199],"genre_scores_gemma":[0.97324187,0.00000864998,0.0009992553,0.0004166988,0.00059607544,0.020029012,0.000027829976,0.000029671495,0.004650945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982292,0.00009524822,0.00027352877,0.00046086818,0.0004236308,0.0005175134],"domain_scores_gemma":[0.99916625,0.00002648907,0.000047735346,0.00050451653,0.0001816343,0.00007339271],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013549245,0.00015553871,0.00015040755,0.00012854792,0.00007651389,0.00003147522,0.0003364854,0.0006020603,0.000059604463],"category_scores_gemma":[0.00029798193,0.00013304764,0.000071286224,0.00033695315,0.000072977404,0.000005219059,0.000111388865,0.00078119774,0.000022428685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080487813,0.00007584601,0.0022935092,0.00007094723,0.000006898494,0.000048644637,0.000037494723,6.1768964e-7,0.9926658,0.00052816106,0.0012721273,0.002195042],"study_design_scores_gemma":[0.0006402566,0.00013418721,0.0040644235,0.00005255518,0.0000019616245,0.000010393894,0.000017154738,1.5182627e-7,0.71059144,0.00016591344,0.28419167,0.00012991882],"about_ca_topic_score_codex":0.000010281789,"about_ca_topic_score_gemma":0.00063543394,"teacher_disagreement_score":0.28291953,"about_ca_system_score_codex":0.000040050447,"about_ca_system_score_gemma":0.00013870459,"threshold_uncertainty_score":0.54255253},"labels":[],"label_agreement":null},{"id":"W1972254777","doi":"10.1038/nprot.2007.14","title":"Quick and easy yeast transformation using the LiAc/SS carrier DNA/PEG method","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":475,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Transformation (genetics); Yeast; Saccharomyces cerevisiae; PEG ratio; DNA; Lithium (medication); Chemistry; Cell biology; Materials science; Computer science; Computational biology; Biophysics; Biochemistry; Biology; Gene","score_opus":0.021536211458645475,"score_gpt":0.38975852415061935,"score_spread":0.36822231269197386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972254777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.76201725,0.0028855691,0.09243547,0.0013333787,0.000491445,0.12677245,0.00020300028,0.00006160372,0.013799846],"genre_scores_gemma":[0.97952545,0.000025837373,0.0092746075,0.0007179341,0.00081701827,0.00812253,0.00004985134,0.00004822878,0.0014185756],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897546,0.00009227992,0.00017027481,0.00023217453,0.00024718992,0.0002826419],"domain_scores_gemma":[0.99946296,0.00001633694,0.0000461286,0.00024189272,0.0001344714,0.00009819225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008272793,0.00012873778,0.000099054596,0.000039044593,0.00014959234,0.00005466079,0.00018676449,0.00036335067,0.000011654518],"category_scores_gemma":[0.00006248842,0.000087518536,0.000057471876,0.00013293586,0.00006631604,0.000005522402,0.00007266516,0.000375954,0.0000021999772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023038537,0.000023081948,0.0005821598,0.00006451305,0.000024293606,0.0000025429238,0.00013258308,0.000024543338,0.9866304,0.00023758321,0.0002449928,0.011802964],"study_design_scores_gemma":[0.00048784848,0.00014942708,0.001452489,0.000027911196,0.000008180301,0.00003576104,0.00008469794,0.0003167248,0.7810967,0.00011377625,0.21609305,0.00013342648],"about_ca_topic_score_codex":0.000012747677,"about_ca_topic_score_gemma":0.00004373682,"teacher_disagreement_score":0.21750818,"about_ca_system_score_codex":0.000013979181,"about_ca_system_score_gemma":0.00007911122,"threshold_uncertainty_score":0.35689023},"labels":[],"label_agreement":null},{"id":"W1974013663","doi":"10.1038/nprot.2007.262","title":"Frontal affinity chromatography—mass spectrometry","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada; University of Calgary","funders":"","keywords":"Mass spectrometry; Surface plasmon resonance; Chemistry; Analytical Chemistry (journal); Chromatography; Tandem mass spectrometry; Drug discovery; Materials science; Nanotechnology; Nanoparticle","score_opus":0.020146621176208374,"score_gpt":0.3813870834607667,"score_spread":0.36124046228455836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974013663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57456964,0.0011908212,0.0012964426,0.0030508644,0.0003134601,0.14051268,0.000067840934,0.00045200723,0.27854624],"genre_scores_gemma":[0.9465058,0.000015384012,0.03007166,0.0017390593,0.0016991951,0.014720984,0.00006186019,0.00005771071,0.005128335],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99795973,0.000032729797,0.00027998883,0.00033699875,0.0007961982,0.00059437094],"domain_scores_gemma":[0.9989963,0.00011712122,0.000066098975,0.00032793474,0.00014866433,0.0003438713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063711044,0.00020858874,0.00034008228,0.00031013685,0.00012605655,0.000033403612,0.00020777903,0.0004306778,0.00075526733],"category_scores_gemma":[0.00013336897,0.00015437051,0.00024113347,0.00061986793,0.00012584076,0.000075584074,0.000065551336,0.0015579737,0.00018150154],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0073115723,0.0013280197,0.58820564,0.0011322865,0.00042144285,0.0018079402,0.00015332419,1.812174e-7,0.33916697,0.014825833,0.030051125,0.015595662],"study_design_scores_gemma":[0.0024168924,0.0011216059,0.52065676,0.0002703027,0.000025118787,0.00030190445,0.000049838127,0.000012175331,0.1863385,0.0019495592,0.2865416,0.0003157186],"about_ca_topic_score_codex":0.000032382046,"about_ca_topic_score_gemma":0.000026192536,"teacher_disagreement_score":0.37193617,"about_ca_system_score_codex":0.000073420815,"about_ca_system_score_gemma":0.0001118447,"threshold_uncertainty_score":0.8269648},"labels":[],"label_agreement":null},{"id":"W1974802525","doi":"10.1038/nprot.2010.194","title":"A practical guide to the synthesis and use of membrane-permeant acetoxymethyl esters of caged inositol polyphosphates","year":2011,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Photochromic and Fluorescence Chemistry","field":"Materials Science","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Inositol; Intracellular; Second messenger system; Endoplasmic reticulum; Chemistry; Membrane; Biophysics; Extracellular; Inositol phosphate; Inositol trisphosphate; In vivo; Cell biology; Biochemistry; Biology; Receptor","score_opus":0.04175687604764942,"score_gpt":0.3328336107424366,"score_spread":0.2910767346947872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974802525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95087403,0.00005132006,0.00020888992,0.0006515269,0.000080016594,0.047495157,0.00009687372,0.00004541299,0.00049678853],"genre_scores_gemma":[0.94548184,0.0000033322297,0.027916119,0.00025936143,0.000035729776,0.026220597,6.6160663e-7,0.000016770677,0.00006561342],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987259,0.00010018561,0.00035418186,0.00028762594,0.00030023506,0.0002318989],"domain_scores_gemma":[0.99867785,0.00040460308,0.00021528307,0.00046667652,0.00012656118,0.00010901646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005519115,0.00015768303,0.0003021005,0.000034444576,0.000062523424,0.000036951846,0.00035706576,0.00023412854,0.00014053698],"category_scores_gemma":[0.0016568244,0.00009926393,0.00005425674,0.00013791032,0.00024733192,0.00021407749,0.00015200114,0.0002779837,0.000006550726],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041350396,0.00009084667,0.0011928966,0.00018128938,0.000013406962,0.000007701596,0.00080193736,5.5683074e-7,0.9952,0.000133906,0.0017955373,0.00016845802],"study_design_scores_gemma":[0.00021087943,0.000070517526,0.0017764469,0.00028767667,0.000026064705,0.000022871085,0.00013851337,0.000019743926,0.9956704,0.000023112678,0.001637377,0.000116403375],"about_ca_topic_score_codex":0.00018181338,"about_ca_topic_score_gemma":0.000009787776,"teacher_disagreement_score":0.027707228,"about_ca_system_score_codex":0.000021513657,"about_ca_system_score_gemma":0.00012732118,"threshold_uncertainty_score":0.40478656},"labels":[],"label_agreement":null},{"id":"W1979973356","doi":"10.1038/nprot.2007.521","title":"Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances","year":2008,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":6078,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Antimicrobial; Minimum inhibitory concentration; Agar; Agar dilution; Bacteria; Dilution; Bacterial growth; Agar plate; Microbiology; Minimum bactericidal concentration; Serial dilution; Chromatography; Nutrient agar; Chemistry; Microtiter plate; Agar Dilution Method; Food science; Biology; Medicine","score_opus":0.02222632366661649,"score_gpt":0.31428466306230624,"score_spread":0.29205833939568976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979973356","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97608566,0.00070620363,0.0007954688,0.00041899073,0.00025407303,0.02129995,0.00004793577,0.00004037417,0.00035132674],"genre_scores_gemma":[0.9920152,0.00002470963,0.004307765,0.0004729526,0.000094441406,0.0026532551,0.000016905822,0.000012395952,0.0004023701],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990792,0.00017123089,0.00026017765,0.00023271886,0.000035502486,0.00022115461],"domain_scores_gemma":[0.99942994,0.00014014478,0.00016340202,0.00016163982,0.000087791996,0.000017054814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025217314,0.00015324217,0.00025812944,0.00004109728,0.0002448776,0.000013870028,0.00014716088,0.00032880605,0.000034898334],"category_scores_gemma":[0.000079466874,0.00010643635,0.000064189284,0.0001125781,0.00045562565,0.00013033282,0.00006083673,0.00039723725,0.00000832527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038693583,0.000052298536,0.0011985338,0.000041542306,0.000029613095,0.0000017723803,0.000646635,0.0000020398813,0.98609304,0.00024364462,0.0063300887,0.004973874],"study_design_scores_gemma":[0.000709558,0.00017837541,0.004217468,0.000114033675,0.000013058502,0.00009164281,0.000060643873,0.0000025218396,0.9647351,0.00002773077,0.029718004,0.00013188393],"about_ca_topic_score_codex":0.000026271182,"about_ca_topic_score_gemma":0.000020046582,"teacher_disagreement_score":0.023387915,"about_ca_system_score_codex":0.000019275476,"about_ca_system_score_gemma":0.00006035507,"threshold_uncertainty_score":0.43403485},"labels":[],"label_agreement":null},{"id":"W1982370151","doi":"10.1038/nprot.2009.179","title":"Protocol for solid-phase microextraction method development","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Analytical chemistry methods development","field":"Chemistry","cited_by":337,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Solid-phase microextraction; Sample preparation; Computer science; Protocol (science); Sample (material); Chromatography; Process engineering; Extraction (chemistry); Biochemical engineering; Chemistry; Gas chromatography–mass spectrometry; Mass spectrometry; Medicine","score_opus":0.051978683504798305,"score_gpt":0.510629054238198,"score_spread":0.45865037073339976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982370151","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008925943,6.165012e-7,0.23368604,0.00020764033,0.000056220513,0.7554291,0.000017582448,0.00025203504,0.010261494],"genre_scores_gemma":[0.000082758284,7.465702e-9,0.453342,0.00009976837,0.0002687592,0.5439728,0.000021642905,0.00003824354,0.0021740363],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974938,0.000031254698,0.00070131326,0.0007333172,0.00046100726,0.0005792843],"domain_scores_gemma":[0.9980899,0.00034230622,0.0003338396,0.00057301845,0.00038487645,0.00027604608],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011190161,0.00041320347,0.0004049807,0.00006302003,0.00023741655,0.00011519461,0.00052245473,0.0011545117,0.00195345],"category_scores_gemma":[0.0010057116,0.0003606137,0.00016977038,0.0001678491,0.000058271067,0.00013410166,0.00011148736,0.002006558,0.000037787562],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067120075,0.0005819605,0.000089455425,0.0012378925,0.00006624112,0.0000063518737,0.000055919274,6.0693833e-7,0.9307297,0.00035680018,0.0019491,0.06425478],"study_design_scores_gemma":[0.002360116,0.000019195759,0.00001273779,0.000078351084,0.000008100222,0.000018938994,0.0000071054656,0.00014406514,0.5191204,0.0005575999,0.47742143,0.0002519248],"about_ca_topic_score_codex":0.0000010746511,"about_ca_topic_score_gemma":0.0000051033194,"teacher_disagreement_score":0.47547233,"about_ca_system_score_codex":0.00018163098,"about_ca_system_score_gemma":0.00054704165,"threshold_uncertainty_score":0.9998846},"labels":[],"label_agreement":null},{"id":"W1983114104","doi":"10.1038/nprot.2006.485","title":"Single-strand conformation polymorphism (SSCP) for the analysis of genetic variation","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":273,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Single-strand conformation polymorphism; Amplicon; Point mutation; Genetics; Biology; Computational biology; DNA sequencing; genomic DNA; Sequence analysis; Polymerase chain reaction; DNA; Mutation; Gene; Molecular biology","score_opus":0.010867609444872785,"score_gpt":0.28555102636860263,"score_spread":0.27468341692372983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983114104","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22244594,0.0032739697,0.5438116,0.0010823222,0.0013821854,0.21712619,0.0011793524,0.000211644,0.0094867665],"genre_scores_gemma":[0.9807488,0.0000015852687,0.0005371047,0.00008386703,0.000044486365,0.018229494,0.00017333751,0.0000046559726,0.00017667384],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99946505,0.000037928843,0.00025302975,0.0000912826,0.000029913224,0.00012279557],"domain_scores_gemma":[0.9990697,0.00042671614,0.00016862259,0.00015979036,0.00017044916,0.0000047380863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015682807,0.00007564398,0.0001546324,0.00013180966,0.00013796349,0.000012179465,0.000083057785,0.00030066233,0.000092171016],"category_scores_gemma":[0.0001209957,0.00005252787,0.00011194337,0.00028072865,0.000057186728,0.000045640303,0.000007734086,0.0001460947,0.0000089355735],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012409363,0.001625127,0.057485618,0.00022487152,0.0050262194,0.0000015271152,0.00091229356,0.01266441,0.7800666,0.09282023,0.01585834,0.032073822],"study_design_scores_gemma":[0.0031470135,0.00036507266,0.7739286,0.000037118603,0.0018888172,0.000013915132,0.00002647299,0.0017149892,0.11522187,0.0020489967,0.101388276,0.00021889122],"about_ca_topic_score_codex":0.00008472549,"about_ca_topic_score_gemma":0.000037415113,"teacher_disagreement_score":0.75830287,"about_ca_system_score_codex":0.000019363228,"about_ca_system_score_gemma":0.0000282723,"threshold_uncertainty_score":0.23189832},"labels":[],"label_agreement":null},{"id":"W1983580270","doi":"10.1038/nprot.2007.356","title":"Using the β-lactamase protein-fragment complementation assay to probe dynamic protein–protein interactions","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"Canadian Institutes of Health Research","keywords":"Protein-fragment complementation assay; Complementation; Enzyme; Protein–protein interaction; Target protein; Bimolecular fluorescence complementation; Biochemistry; Computational biology; Protein engineering; Chemistry; Green fluorescent protein; BETA (programming language); Biology; Molecular biology; Gene; Computer science","score_opus":0.020762781518662392,"score_gpt":0.380388610915692,"score_spread":0.3596258293970296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983580270","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3893175,0.00040464167,0.1466525,0.0063149636,0.00032432194,0.45335197,0.00007471027,0.00013597691,0.0034233776],"genre_scores_gemma":[0.9077221,9.10267e-7,0.02099902,0.00061915244,0.00026453938,0.06799929,0.000062698135,0.000043637596,0.0022886472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984063,0.00013426336,0.0003508227,0.00042748378,0.0002858769,0.00039526058],"domain_scores_gemma":[0.9991033,0.000011029075,0.00018165294,0.00039511124,0.00021269098,0.000096190925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007342284,0.0002494933,0.00015696854,0.00007407952,0.00040336134,0.00006816118,0.00026436,0.00033660044,0.000028058977],"category_scores_gemma":[0.00013047791,0.00017127757,0.00010241758,0.0002432536,0.00007522423,0.000008673865,0.00020178064,0.0006877746,0.000013532254],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028241923,0.00014579088,0.00009819211,0.0000716057,0.00009068128,0.0000039707465,0.00010866127,0.000016462205,0.9953347,0.0003701074,0.0004089415,0.0030684904],"study_design_scores_gemma":[0.00076275755,0.0003951197,0.00044667607,0.0003274006,0.000018292856,0.000013938138,0.00022831828,0.00007393387,0.88103193,0.00021883668,0.116195835,0.0002869667],"about_ca_topic_score_codex":0.000020153402,"about_ca_topic_score_gemma":0.00018801118,"teacher_disagreement_score":0.5184046,"about_ca_system_score_codex":0.00010448402,"about_ca_system_score_gemma":0.00007703894,"threshold_uncertainty_score":0.6984497},"labels":[],"label_agreement":null},{"id":"W1984214088","doi":"10.1038/nprot.2014.054","title":"Engineering and characterizing monomeric fluorescent proteins for live-cell imaging applications","year":2014,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Protein engineering; Directed evolution; Folding (DSP implementation); Fluorescence; Synthetic biology; Molecular engineering; Protein folding; Fluorescent protein; Biophysics; Computational biology; Chemistry; Nanotechnology; Green fluorescent protein; Biology; Materials science; Biochemistry; Physics","score_opus":0.003743108314221275,"score_gpt":0.2727682231291808,"score_spread":0.26902511481495955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984214088","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0055339714,0.00033952657,0.900123,0.00017005915,0.00002488374,0.093566395,0.000026782996,0.000121508456,0.0000938622],"genre_scores_gemma":[0.11393485,0.000018569432,0.48438886,0.00040302475,0.00039996675,0.40061098,0.00009120314,0.000070891714,0.00008164817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992072,0.000012647423,0.00014162624,0.00036082085,0.00005528961,0.00022240676],"domain_scores_gemma":[0.99949867,0.000011232678,0.00007981426,0.00027992553,0.00007125733,0.00005909434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013223593,0.0001546571,0.00012230533,0.000038601105,0.00007982194,0.000039981394,0.0001625897,0.00015930485,0.0000013821614],"category_scores_gemma":[0.000059652233,0.00015449469,0.00004221881,0.00005161891,0.00003297589,0.000008241198,0.00008544472,0.00019470716,0.0000018654421],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027936227,0.000028737257,0.00093776063,0.00014608544,0.000003470794,1.0317016e-7,0.000010749521,0.0000032509226,0.98984426,0.00012611023,0.00012067516,0.008750865],"study_design_scores_gemma":[0.00024590225,0.00008665594,0.00035653618,0.000050072063,0.000003534169,0.0000029938576,0.0000026326795,0.00052897277,0.78745466,0.00005347331,0.21105815,0.00015641823],"about_ca_topic_score_codex":9.3004843e-7,"about_ca_topic_score_gemma":4.137392e-7,"teacher_disagreement_score":0.41573414,"about_ca_system_score_codex":0.00001595687,"about_ca_system_score_gemma":0.00001955404,"threshold_uncertainty_score":0.6300111},"labels":[],"label_agreement":null},{"id":"W1984473506","doi":"10.1038/nprot.2007.266","title":"Detection of protein–protein interactions using a simple survival protein-fragment complementation assay based on the enzyme dihydrofolate reductase","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"","keywords":"Dihydrofolate reductase; Protein-fragment complementation assay; Complementation; Biology; Fusion protein; Enzyme; Function (biology); Computational biology; Gene; Protein–protein interaction; Biochemistry; Cell biology; Phenotype; Recombinant DNA","score_opus":0.01919898157514386,"score_gpt":0.321916312659719,"score_spread":0.3027173310845751,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984473506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7016053,0.000032072145,0.19735886,0.00028499504,0.00012846147,0.09962605,0.00008096742,0.000028581924,0.0008546718],"genre_scores_gemma":[0.9821653,1.2732791e-7,0.002558994,0.00017071218,0.0002203403,0.014691761,0.00009711579,0.000024392843,0.00007127969],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855274,0.0001524856,0.0004620337,0.00025589598,0.00028691636,0.00028990745],"domain_scores_gemma":[0.9989316,0.000027988666,0.00037586354,0.00043663642,0.0001634636,0.0000644501],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012776189,0.00020439159,0.00016010916,0.00007484735,0.00020669708,0.00004482578,0.00020260093,0.00025387207,0.00003637979],"category_scores_gemma":[0.000098627075,0.00015591702,0.000114199334,0.00018131088,0.00005812197,0.000010750812,0.00007160549,0.00047754656,0.0000031177044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055829453,0.000119595774,0.000026768172,0.00007170094,0.00003792656,8.725863e-7,0.00003528773,0.00042286713,0.99438334,0.00034474835,0.000051398925,0.0039472175],"study_design_scores_gemma":[0.0007820561,0.00045880195,0.000086006585,0.00016094248,0.000011343764,0.0000026338657,0.0000689189,0.007915773,0.97790927,0.00052854826,0.011891942,0.00018377652],"about_ca_topic_score_codex":0.00003449764,"about_ca_topic_score_gemma":0.00009245894,"teacher_disagreement_score":0.28055993,"about_ca_system_score_codex":0.000068795445,"about_ca_system_score_gemma":0.00008038386,"threshold_uncertainty_score":0.63581115},"labels":[],"label_agreement":null},{"id":"W1986532957","doi":"10.1038/nprot.2014.119","title":"Activation and measurement of free whisking in the lightly anesthetized rodent","year":2014,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neural dynamics and brain function","field":"Neuroscience","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of Neurological Disorders and Stroke; Canadian Institutes of Health Research","keywords":"Whisking in animals; Neuroscience; Rhythm; Neurochemical; Central pattern generator; Biology; Sensory system; Medicine; Internal medicine","score_opus":0.03173388504699768,"score_gpt":0.28919537185507843,"score_spread":0.25746148680808073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986532957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8729572,0.000017791372,0.0010512737,0.008892719,0.00016856004,0.111865215,0.0000033701247,0.000067001645,0.0049768584],"genre_scores_gemma":[0.9879364,7.150268e-7,0.0000621329,0.0007918309,0.000035953617,0.011153956,3.0504472e-7,0.00000554751,0.000013179188],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989272,0.00019413725,0.00014010251,0.00019037143,0.00045059744,0.00009763156],"domain_scores_gemma":[0.99949414,0.00011309877,0.00010332887,0.00022913166,0.0000461156,0.000014173581],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007480846,0.00007375934,0.00009295122,0.00005454635,0.000055842942,0.00003956606,0.00020607063,0.000087275635,0.0000023428495],"category_scores_gemma":[0.00079569605,0.000045318142,0.000021893713,0.00018209266,0.000025905814,0.00009284017,0.000033424338,0.000281706,6.191542e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011770887,0.000083902305,0.0010647958,0.00005649438,8.6462774e-7,0.0000010373479,0.00016444392,0.000021126394,0.9772728,0.013040702,0.00016477128,0.008011327],"study_design_scores_gemma":[0.0019481324,0.00039982883,0.03666647,0.00029920734,0.000004668678,0.000016928338,0.000018904984,0.0033990955,0.91930485,0.01454864,0.023225127,0.0001681625],"about_ca_topic_score_codex":0.00000831874,"about_ca_topic_score_gemma":0.000020276217,"teacher_disagreement_score":0.11497916,"about_ca_system_score_codex":0.000022697019,"about_ca_system_score_gemma":0.000011200147,"threshold_uncertainty_score":0.18480203},"labels":[],"label_agreement":null},{"id":"W1987946978","doi":"10.1038/nprot.2012.111","title":"Protein labeling with the labeling precursor [18F]SiFA-SH for positron emission tomography","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Medical Imaging Techniques and Applications","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Maleimide; Reagent; Succinimide; Chemistry; Thiol; Combinatorial chemistry; Biochemistry; Organic chemistry","score_opus":0.0197251043769966,"score_gpt":0.3606907501641336,"score_spread":0.340965645787137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987946978","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06021931,0.0014603655,0.044175796,0.082006425,0.00009194931,0.8069999,0.000054733882,0.0014025207,0.003588995],"genre_scores_gemma":[0.21797968,0.0000022503834,0.23170578,0.002338336,0.00071630254,0.54593074,0.00004453946,0.00006669272,0.0012156871],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99873453,0.000036642377,0.00020270821,0.0002527337,0.00036207784,0.00041132257],"domain_scores_gemma":[0.99892485,0.00008389376,0.00012490591,0.00043929263,0.00020894951,0.00021808446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064698484,0.00018412463,0.00022536848,0.000062642954,0.00022765434,0.000038565842,0.00020217926,0.0002282718,0.00002278315],"category_scores_gemma":[0.0001593486,0.00009821957,0.00009436588,0.00032544232,0.000074742165,0.000096789474,0.000044698107,0.0008770056,0.0000043014243],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014306876,0.001294525,0.011420505,0.0017398619,0.00017003823,0.000004367384,0.0005436123,9.0219163e-7,0.84295547,0.01143805,0.102704935,0.026297038],"study_design_scores_gemma":[0.0018520496,0.0005844391,0.00039417794,0.0020535195,0.00013181359,0.0000373049,0.000040946365,0.00029790876,0.36520994,0.00072978996,0.6284098,0.00025831393],"about_ca_topic_score_codex":0.000004276734,"about_ca_topic_score_gemma":8.0654723e-7,"teacher_disagreement_score":0.52570486,"about_ca_system_score_codex":0.000034993154,"about_ca_system_score_gemma":0.0000694506,"threshold_uncertainty_score":0.40052778},"labels":[],"label_agreement":null},{"id":"W1988579368","doi":"10.1038/nprot.2006.46","title":"The Dimensional Change Card Sort (DCCS): a method of assessing executive function in children","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Child and Animal Learning Development","field":"Psychology","cited_by":1536,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Card sorting; sort; Autism; Psychology; Executive functions; Developmental psychology; Audiology; Cognition; Neuroscience; Computer science; Medicine; Information retrieval","score_opus":0.0204604965889699,"score_gpt":0.3714756713197455,"score_spread":0.3510151747307756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988579368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5183913,0.002858406,0.0019482492,0.0040008673,0.0017665637,0.38185644,0.000102031576,0.0004479745,0.088628165],"genre_scores_gemma":[0.94452137,6.5109253e-7,0.00415061,0.00042148345,0.0006006947,0.049154278,0.000041270287,0.00003279084,0.001076837],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99869275,0.00024056622,0.00026385664,0.00030262856,0.00025536798,0.00024485542],"domain_scores_gemma":[0.9993847,0.0001658483,0.00016766583,0.00018471855,0.00007347072,0.000023572538],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071133464,0.00013866113,0.00019728096,0.00008367347,0.00012705295,0.000032621312,0.00013388676,0.0002622265,0.0000484041],"category_scores_gemma":[0.000044915887,0.00009419558,0.000074076845,0.0002470049,0.0000411208,0.00006844567,0.000050886392,0.0007290028,0.000013050383],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010681418,0.0006175988,0.8518859,0.000037941667,0.00019450365,0.000015936654,0.0011858477,0.000026397041,0.0031490717,0.036240164,0.012025798,0.093552686],"study_design_scores_gemma":[0.00080430694,0.00009065988,0.96987414,0.00011378773,0.000009125437,0.000017277687,0.000048695212,0.00000945861,0.0005375778,0.0012461712,0.02713289,0.00011592007],"about_ca_topic_score_codex":0.00019126589,"about_ca_topic_score_gemma":0.000038308917,"teacher_disagreement_score":0.4261301,"about_ca_system_score_codex":0.000048051115,"about_ca_system_score_gemma":0.000047423462,"threshold_uncertainty_score":0.38411844},"labels":[],"label_agreement":null},{"id":"W1989578357","doi":"10.1038/nprot.2012.064","title":"Whole plant cell wall characterization using solution-state 2D NMR","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":708,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Cell wall; Lignin; Characterization (materials science); Plant cell; Chemistry; Computational biology; Biochemical engineering; Nanotechnology; Materials science; Biochemistry; Biology; Organic chemistry","score_opus":0.02616370290679302,"score_gpt":0.2541640960959039,"score_spread":0.2280003931891109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989578357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9759805,0.000120794975,0.000039834064,0.00041551696,0.00018229613,0.022000672,0.0005442515,0.00010501516,0.00061107497],"genre_scores_gemma":[0.9915775,0.000009880517,0.00022765006,0.00084092584,0.0007623456,0.0048112045,0.0006973486,0.0000025782304,0.0010705806],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989248,0.0000576668,0.00018486466,0.00019133039,0.00020542255,0.00043594948],"domain_scores_gemma":[0.9995761,0.00005013117,0.0001397841,0.00005555248,0.000040085728,0.00013832856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002472026,0.00015192488,0.00014409811,0.000012394031,0.00019095682,0.0000828929,0.00019164763,0.0002532737,0.0002199061],"category_scores_gemma":[0.000011007071,0.0000598332,0.00006431397,0.00017320317,0.000015281817,0.00030647792,0.000049036287,0.00031739185,0.00010140033],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033263237,0.00009077354,0.0072487597,0.000016863769,0.0000037704842,0.0000015705577,0.000058645022,0.0000017818711,0.98720133,0.000032104883,0.0004906576,0.0048204698],"study_design_scores_gemma":[0.00023493197,0.00012442606,0.10105812,0.000106869884,0.000012470642,0.000021821219,0.000013539637,0.0010273388,0.17825101,0.00009463377,0.7186427,0.00041211827],"about_ca_topic_score_codex":0.000095712094,"about_ca_topic_score_gemma":0.000035668498,"teacher_disagreement_score":0.8089503,"about_ca_system_score_codex":0.00003017277,"about_ca_system_score_gemma":0.000009548008,"threshold_uncertainty_score":0.24399272},"labels":[],"label_agreement":null},{"id":"W1990675342","doi":"10.1038/nprot.2007.203","title":"Use of luminescent bacteria for rapid screening and characterization of short cationic antimicrobial peptides synthesized on cellulose using peptide array technology","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Peptide; Antimicrobial; Combinatorial chemistry; Antimicrobial peptides; Bacteria; Cellulose; High-throughput screening; Luminescence; Biology; Chemistry; Biochemistry; Microbiology; Materials science","score_opus":0.02942664617116186,"score_gpt":0.2882189491454035,"score_spread":0.25879230297424166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990675342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9739943,0.000027312271,0.006559971,0.00009140042,0.00011703688,0.018993538,0.00015328462,0.00004434423,0.000018827923],"genre_scores_gemma":[0.98886836,0.000009611634,0.009519744,0.000064317814,0.000052052008,0.0011200117,0.00015731747,0.000033984797,0.00017460181],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869436,0.00006193333,0.0005363884,0.0003333829,0.00004374011,0.00033016724],"domain_scores_gemma":[0.99887687,0.00020165987,0.0004094893,0.00024993072,0.00024317706,0.000018873332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035442918,0.00023941185,0.0005018233,0.00033631633,0.00013287386,0.000022564882,0.00015158764,0.00069494743,0.000021778242],"category_scores_gemma":[0.0001543485,0.00021949668,0.00011520735,0.00019396949,0.00034413178,0.00020045173,0.000052176794,0.0003613428,0.0000011534418],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014439041,0.00017982909,0.003409628,0.00026674703,0.00010009439,7.957934e-7,0.00009063389,0.0000019422603,0.98949844,0.0003377528,0.00007420066,0.004596036],"study_design_scores_gemma":[0.0008064433,0.00027910827,0.0072093494,0.00073450187,0.000049129194,0.000027615462,0.00003841391,0.000008031853,0.9861792,0.000011898192,0.00445482,0.00020153806],"about_ca_topic_score_codex":0.0000186429,"about_ca_topic_score_gemma":0.000007877898,"teacher_disagreement_score":0.017873526,"about_ca_system_score_codex":0.000031045434,"about_ca_system_score_gemma":0.00005456185,"threshold_uncertainty_score":0.8950815},"labels":[],"label_agreement":null},{"id":"W1992362863","doi":"10.1038/nprot.2012.066","title":"Convergent synthesis of aminomethylene peptidomimetics","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Chemical Synthesis and Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Peptidomimetic; Aziridine; Peptide; Peptide bond; Combinatorial chemistry; Amide; Conjugate; Chemistry; Peptide synthesis; Convergent synthesis; Cysteine; Solid-phase synthesis; Stereochemistry; Amino acid; Biochemistry; Organic chemistry; Ring (chemistry); Mathematics","score_opus":0.010443934291408613,"score_gpt":0.2984638020349405,"score_spread":0.2880198677435319,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992362863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9622965,0.0026082473,0.0008861173,0.0003371096,0.00014918613,0.02387213,0.00010248607,0.00003248982,0.009715768],"genre_scores_gemma":[0.98828375,0.000022673938,0.0017958026,0.00009644844,0.00029503266,0.00923298,0.000014511235,0.000016557287,0.00024222022],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991444,0.000049310085,0.00022425737,0.0001818263,0.00016940049,0.00023082687],"domain_scores_gemma":[0.999314,0.00003962335,0.0001219209,0.00033472263,0.00008038697,0.00010930705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027201333,0.0001295963,0.00022231953,0.000034492736,0.000026310887,0.000006919685,0.00019236196,0.00033384637,0.00014490276],"category_scores_gemma":[0.0004161395,0.00010478468,0.0002001794,0.000115496354,0.00005671678,0.0000030625047,0.000087955676,0.0001371467,0.000011359755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006205561,0.000200718,0.017036261,0.00006296695,0.00009773077,1.6199243e-7,0.000008746467,9.90787e-7,0.9751567,0.00014967841,0.0013347067,0.005889239],"study_design_scores_gemma":[0.00015076535,0.00003583574,0.0023601314,0.000026409973,0.000039164865,0.0000014408096,0.000011126674,0.0000040437076,0.9075636,0.000021220685,0.089664325,0.00012188217],"about_ca_topic_score_codex":0.0000031041811,"about_ca_topic_score_gemma":8.861054e-7,"teacher_disagreement_score":0.08832961,"about_ca_system_score_codex":0.00001052655,"about_ca_system_score_gemma":0.000019145888,"threshold_uncertainty_score":0.42729953},"labels":[],"label_agreement":null},{"id":"W1992577725","doi":"10.1038/nprot.2006.101","title":"Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":540,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children; Canada Research Chairs","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Isotopic labeling; Valine; Isoleucine; Nuclear magnetic resonance spectroscopy; Chemistry; Leucine; Isotope; Macromolecule; Deuterium; Stable isotope labeling by amino acids in cell culture; Mass spectrometry; Biochemistry; Alanine; Amino acid; Chromatography; Proteomics; Stereochemistry; Organic chemistry","score_opus":0.008210618176446902,"score_gpt":0.2870842680478667,"score_spread":0.27887364987141977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992577725","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5624059,0.0005436779,0.088687025,0.0006849939,0.00053825945,0.3455988,0.00012219475,0.00022632495,0.0011928573],"genre_scores_gemma":[0.886725,3.9179827e-7,0.0062642368,0.0000654318,0.00029308704,0.10651764,0.0000142447725,0.00002086476,0.00009910404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986591,0.000080881764,0.00030398127,0.00032472107,0.000365331,0.0002659954],"domain_scores_gemma":[0.9991581,0.00006931741,0.00022007118,0.00034619216,0.00018525071,0.000021070548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003790897,0.00017559271,0.0002107971,0.000039341503,0.00023716227,0.00013962369,0.0002967397,0.00021654928,0.000054984543],"category_scores_gemma":[0.000041567204,0.00011147822,0.000053960364,0.00018485395,0.000057150326,0.00020219258,0.00004112966,0.00030211426,0.00000412543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000220165,0.0001963874,0.000085478794,0.0000722629,0.00001148503,8.012963e-7,0.000077432065,0.00017565528,0.98385704,0.010807716,0.004340947,0.00015460544],"study_design_scores_gemma":[0.0013482696,0.0011521962,0.0003312073,0.000041757412,0.000033609595,0.0000016399092,0.0001451349,0.00006656462,0.97737604,0.014018656,0.0053360686,0.00014888078],"about_ca_topic_score_codex":0.0003949844,"about_ca_topic_score_gemma":0.0002819556,"teacher_disagreement_score":0.3243191,"about_ca_system_score_codex":0.000038825612,"about_ca_system_score_gemma":0.00007534881,"threshold_uncertainty_score":0.45459497},"labels":[],"label_agreement":null},{"id":"W1992791744","doi":"10.1038/nprot.2013.100","title":"In situ and real-time monitoring of mechanochemical milling reactions using synchrotron X-ray diffraction","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"X-ray Diffraction in Crystallography","field":"Materials Science","cited_by":161,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre in Green Chemistry and Catalysis","funders":"Engineering and Physical Sciences Research Council","keywords":"Mechanochemistry; Synchrotron; Materials science; Rietveld refinement; Powder diffraction; Diffraction; X-ray crystallography; Crystal structure; Grinding; Crystallography; Chemical engineering; Nanotechnology; Chemistry; Optics; Composite material; Physics","score_opus":0.016453773674517384,"score_gpt":0.31684399925069534,"score_spread":0.30039022557617795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992791744","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97827584,0.000019844822,0.00021734548,0.00007491522,0.00020020649,0.020874301,0.000003885286,0.0000751077,0.00025855424],"genre_scores_gemma":[0.9530819,0.000008623986,0.02661009,0.000014327232,0.00020370359,0.020015685,0.000001839723,0.000025331285,0.000038468148],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99843246,0.00010145101,0.00044715515,0.00038821407,0.0003385521,0.00029219428],"domain_scores_gemma":[0.9989815,0.00017357658,0.0003024277,0.00028388633,0.00017195789,0.00008668385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003654391,0.00018257265,0.00028121565,0.0002598711,0.00010010874,0.00008602532,0.00015361384,0.00042428033,0.0001761029],"category_scores_gemma":[0.00015939001,0.00017371475,0.00005929859,0.00034576526,0.000077788995,0.00082379003,0.000063932945,0.00051795854,0.000018729947],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040247563,0.00008857379,0.003034317,0.00012511545,0.000005891029,0.0000016777127,0.00007385618,0.00007862435,0.99637645,0.000038621696,0.00004827339,0.0000883245],"study_design_scores_gemma":[0.000536496,0.000074890275,0.023330385,0.0005027608,0.0000134744805,0.000020165116,0.0001431537,0.00058503944,0.973051,0.0011196563,0.0003949001,0.00022807154],"about_ca_topic_score_codex":0.0003792809,"about_ca_topic_score_gemma":0.0000023299929,"teacher_disagreement_score":0.026392745,"about_ca_system_score_codex":0.00014152328,"about_ca_system_score_gemma":0.000036210058,"threshold_uncertainty_score":0.7083882},"labels":[],"label_agreement":null},{"id":"W1993903060","doi":"10.1038/nprot.2014.105","title":"Generation of a transgenic ORFeome library in Drosophila","year":2014,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"ORFS; Biology; Open reading frame; RNA interference; Drosophila melanogaster; Genetics; Integrase; Computational biology; Transgene; Genomic library; Gene; Genetic screen; Plasmid; Schneider 2 cells; Function (biology); Mutant; RNA; Peptide sequence","score_opus":0.012574502015497018,"score_gpt":0.32630708432824923,"score_spread":0.3137325823127522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993903060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9591843,0.0006179931,0.0077948384,0.00037647027,0.00012083367,0.029078718,0.000017458431,0.00003289688,0.0027764854],"genre_scores_gemma":[0.99091893,0.000007427625,0.0015514551,0.000120735094,0.0002794264,0.0069375252,0.000042980493,0.000016132833,0.00012539231],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99948967,0.000026576387,0.00014544181,0.00016391215,0.00007021466,0.000104216735],"domain_scores_gemma":[0.99973667,0.000004035798,0.000027571587,0.0001887578,0.00001533958,0.000027643302],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009024941,0.00008024016,0.00009595141,0.000041619172,0.000009955299,0.000008183993,0.00010999298,0.00024264031,0.000012298708],"category_scores_gemma":[0.000027075941,0.000075830845,0.000045523462,0.000087869004,0.000013603007,0.0000032642383,0.0000221699,0.00013432463,0.0000011511045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003452392,0.000030426587,0.0017318679,0.00005596419,0.000005555873,2.6628257e-7,0.000019656645,0.00045040957,0.9951835,0.00030454763,0.0006436988,0.0015395809],"study_design_scores_gemma":[0.00055638043,0.0001761777,0.003446889,0.000027207087,0.0000021277544,0.0000018200177,0.0000016019894,0.0004912339,0.94922537,0.00012767957,0.045848105,0.00009543406],"about_ca_topic_score_codex":7.90311e-7,"about_ca_topic_score_gemma":0.000007103584,"teacher_disagreement_score":0.045958158,"about_ca_system_score_codex":0.0000022588908,"about_ca_system_score_gemma":0.00002281994,"threshold_uncertainty_score":0.30922922},"labels":[],"label_agreement":null},{"id":"W1994941758","doi":"10.1038/nprot.2013.088","title":"Chromatin tandem affinity purification sequencing","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; Canadian Institutes of Health Research; Ottawa Hospital Research Institute","keywords":"Chromatin; Chromatin immunoprecipitation; ChIP-sequencing; Tandem affinity purification; Computational biology; DNA; DNA sequencing; Biology; Immunoprecipitation; Genome; ChIP-on-chip; ChIA-PET; Tandem; Molecular biology; Genetics; Affinity chromatography; Chromatin remodeling; Gene; Gene expression; Biochemistry; Promoter; Materials science","score_opus":0.010489170058358515,"score_gpt":0.27146621067497967,"score_spread":0.26097704061662114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994941758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95590615,0.000101846934,0.0009842013,0.00028251775,0.00007046205,0.036699224,0.0000109513185,0.000043020184,0.0059016366],"genre_scores_gemma":[0.950965,0.000005084302,0.008329126,0.0003655948,0.00022173232,0.03952889,0.000095521544,0.000024339584,0.00046474376],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916905,0.000039198647,0.0001952017,0.00027541348,0.00012155926,0.00019960216],"domain_scores_gemma":[0.99928117,0.0000066667894,0.00011869648,0.00039250273,0.00013475561,0.00006623855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015463265,0.00013696449,0.000108190856,0.000024271347,0.00008757751,0.000074936215,0.00024181936,0.00041022146,0.00007020764],"category_scores_gemma":[0.00009407909,0.00012460511,0.000059908118,0.00007434847,0.000030373905,0.000005863293,0.00007216837,0.00024462913,0.000068089386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005958783,0.000032206826,0.0015943116,0.00003656895,0.000016217844,5.3577e-7,0.000027280172,0.000035942467,0.9921067,0.000429437,0.0035554245,0.0021594388],"study_design_scores_gemma":[0.0012246697,0.00042505385,0.0315799,0.00009283714,0.000013729911,0.000038656966,0.000119364144,0.0025735626,0.89162755,0.0039908676,0.06763536,0.0006784626],"about_ca_topic_score_codex":0.000011762997,"about_ca_topic_score_gemma":0.000013629482,"teacher_disagreement_score":0.10047914,"about_ca_system_score_codex":0.000042913933,"about_ca_system_score_gemma":0.000102850274,"threshold_uncertainty_score":0.5081249},"labels":[],"label_agreement":null},{"id":"W1995252203","doi":"10.1038/nprot.2007.146","title":"A protocol for conducting 7-day daily renewal tests with Lemna gibba","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Environmental Toxicology and Ecotoxicology","field":"Environmental Science","cited_by":101,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"U.S. Environmental Protection Agency","keywords":"Lemna gibba; Lemna; Toxicant; Toxicity; Macrophyte; Aquatic toxicology; Pesticide; Aquatic plant; Biology; Toxicology; Environmental science; Botany; Ecology; Chemistry","score_opus":0.044777678610373926,"score_gpt":0.37439168377306825,"score_spread":0.32961400516269435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995252203","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010757984,0.0000010784222,0.0009519861,0.00027327222,0.000054632,0.9543265,0.000008617925,0.00012348659,0.03350244],"genre_scores_gemma":[0.033706885,2.8556583e-8,0.015111211,0.0011799216,0.00016866265,0.9470766,0.000006361953,0.00004540287,0.0027048802],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99772936,0.00009212959,0.00038066722,0.00068558473,0.0003227011,0.000789572],"domain_scores_gemma":[0.99883604,0.0003083765,0.00025093215,0.00039755774,0.000012021249,0.00019504386],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0015269843,0.0003158944,0.00028726103,0.00005927018,0.0004246872,0.000040308445,0.0004186478,0.00071901415,0.001660182],"category_scores_gemma":[0.00018749603,0.0002428083,0.00007846125,0.00030943766,0.0004327214,0.00027599928,0.00019178347,0.0007841979,0.00015499277],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005752428,0.0023762349,0.43438435,0.00036977878,0.000118380915,0.00019816383,0.000790043,0.0004281407,0.48929054,0.0011429827,0.038581878,0.026567066],"study_design_scores_gemma":[0.007251428,0.0030864081,0.030134825,0.00012632478,0.000020058696,0.00014139326,0.00010148708,0.000053657455,0.35025004,0.0023140912,0.60574055,0.0007797741],"about_ca_topic_score_codex":0.000008623248,"about_ca_topic_score_gemma":0.00051641534,"teacher_disagreement_score":0.56715864,"about_ca_system_score_codex":0.0002790968,"about_ca_system_score_gemma":0.000027803786,"threshold_uncertainty_score":0.99925244},"labels":[],"label_agreement":null},{"id":"W1995618392","doi":"10.1038/nprot.2009.229","title":"Defining transcribed regions using RNA-seq","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Cancer Research UK","keywords":"Computational biology; RNA-Seq; Biology; RNA; Genetics; Transcriptome; Gene; Gene expression","score_opus":0.015483478818025346,"score_gpt":0.3548824693718156,"score_spread":0.33939899055379025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995618392","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.28220576,0.0033604917,0.27966756,0.004592718,0.0030814887,0.37629274,0.00037620493,0.0006396325,0.049783435],"genre_scores_gemma":[0.9286966,0.000013639123,0.024162553,0.0010461336,0.0007620305,0.044113763,0.00013581508,0.00014810819,0.00092141604],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855727,0.000066784334,0.00019063077,0.00046839158,0.000303664,0.0004132363],"domain_scores_gemma":[0.9989819,0.0000107219685,0.0000691738,0.0006056045,0.00018371288,0.00014889441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029021822,0.0001929891,0.0001520646,0.00008511806,0.00015646627,0.00006142979,0.00037218278,0.00096163433,0.000082538805],"category_scores_gemma":[0.0002071849,0.00018968932,0.0001481606,0.0001858032,0.0000791339,0.0000053768426,0.00009905056,0.0014056001,0.000018788205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012604603,0.0000412718,0.000013439205,0.000025528447,0.000033165892,0.000010136644,0.000018371136,0.000031601983,0.9928797,0.004065955,0.0009954982,0.0017593002],"study_design_scores_gemma":[0.00081840897,0.00015325502,0.00002294001,0.000039836923,0.000011401045,0.000061438215,0.000009821473,0.00016712677,0.83365625,0.00054084556,0.16429424,0.00022445858],"about_ca_topic_score_codex":0.00002177785,"about_ca_topic_score_gemma":0.00011272907,"teacher_disagreement_score":0.6464908,"about_ca_system_score_codex":0.000022166603,"about_ca_system_score_gemma":0.0003108075,"threshold_uncertainty_score":0.7735306},"labels":[],"label_agreement":null},{"id":"W2000106654","doi":"10.1038/nprot.2007.321","title":"The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2442,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"","keywords":"Fluorescence; Nucleic acid; Fluorescence spectroscopy; Chemistry; Ligand (biochemistry); Biophysics; Peptide; Chromatography; Analytical Chemistry (journal); Biochemistry; Biology; Receptor; Optics","score_opus":0.029890962352730168,"score_gpt":0.34799787171188173,"score_spread":0.3181069093591516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000106654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8488761,0.000048477053,0.10084876,0.00024339677,0.000041646057,0.049742024,0.000028830556,0.000035091245,0.00013568006],"genre_scores_gemma":[0.95449907,0.0000016259263,0.016541637,0.00011002036,0.00010012946,0.028528888,0.000024476438,0.000018830828,0.0001753016],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901426,0.00006138844,0.00023672088,0.00032031193,0.000128383,0.00023893209],"domain_scores_gemma":[0.9990269,0.00003074001,0.00012858985,0.00058189646,0.00015542292,0.00007645413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035707347,0.00014195853,0.00012182084,0.000037961094,0.00018706403,0.000040021474,0.00027099845,0.00029833557,0.0000054126094],"category_scores_gemma":[0.00025311118,0.00009990436,0.00010144441,0.00015065078,0.00009509424,0.0000045833485,0.00017395876,0.00035647477,0.0000012707922],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022095411,0.000045755267,0.0007238418,0.000016012324,0.000025070212,4.5561598e-7,0.000011674122,6.581275e-7,0.9858924,0.0001454637,0.00043706052,0.012480636],"study_design_scores_gemma":[0.00012247007,0.00020934657,0.0019501995,0.000035814024,0.0000054011284,0.0000037218654,0.0000054471625,0.0000047794833,0.8185069,0.00010219897,0.17895956,0.0000941596],"about_ca_topic_score_codex":0.0000123727405,"about_ca_topic_score_gemma":0.00008242736,"teacher_disagreement_score":0.17852251,"about_ca_system_score_codex":0.000018468625,"about_ca_system_score_gemma":0.00004275837,"threshold_uncertainty_score":0.40739816},"labels":[],"label_agreement":null},{"id":"W2000693939","doi":"10.1038/nprot.2009.118","title":"Isotope labeling methods for studies of excited protein states by relaxation dispersion NMR spectroscopy","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Nuclear magnetic resonance spectroscopy; Spectroscopy; Excited state; Chemistry; Relaxation (psychology); Protein dynamics; Isotopic labeling; Millisecond; Structural biology; Conformational isomerism; Molecule; Nuclear magnetic resonance; Chemical physics; Analytical Chemistry (journal); Biological system; Molecular dynamics; Computational chemistry; Physics; Biochemistry; Atomic physics; Stereochemistry; Chromatography; Biology","score_opus":0.012664861948186265,"score_gpt":0.39353602188348524,"score_spread":0.38087115993529896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000693939","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23358603,0.013790587,0.5089077,0.0017007415,0.00014710469,0.24116789,0.0002271635,0.000106389954,0.0003664201],"genre_scores_gemma":[0.14863144,0.00017967178,0.7836987,0.0007996309,0.00035091463,0.06484682,0.0007112288,0.000059216032,0.0007223965],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998985,0.00009010554,0.00026887734,0.0003305318,0.00011527864,0.00021018875],"domain_scores_gemma":[0.99916977,0.000024462277,0.00022712993,0.00027165923,0.0002708781,0.000036078214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038191435,0.00017984395,0.00024078904,0.000040511277,0.000083013976,0.00001761366,0.00017331862,0.00037958001,0.0000018158981],"category_scores_gemma":[0.0004434534,0.0001445426,0.00009003377,0.00012449022,0.000047780446,0.000008310487,0.000041977,0.00021039032,2.6648866e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000466549,0.000046104677,0.00005090637,0.00012111903,0.000044533794,1.7269448e-7,0.00004391489,0.000018680701,0.98324907,0.0004636299,0.001266924,0.014228413],"study_design_scores_gemma":[0.0008342573,0.0015089706,0.00004684157,0.00011558659,0.000014304164,0.0000012915409,0.000034327702,0.0003384279,0.96181697,0.0098901335,0.025228176,0.00017072265],"about_ca_topic_score_codex":0.0000019251945,"about_ca_topic_score_gemma":0.0000021584046,"teacher_disagreement_score":0.274791,"about_ca_system_score_codex":0.00002478012,"about_ca_system_score_gemma":0.000038235125,"threshold_uncertainty_score":0.5894276},"labels":[],"label_agreement":null},{"id":"W2002192590","doi":"10.1038/nprot.2006.430","title":"Preparation of ready-to-use, storable and reconstituted type I collagen from rat tail tendon for tissue engineering applications","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Collagen: Extraction and Characterization","field":"Materials Science","cited_by":579,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Acetic acid; Tissue engineering; Extracellular matrix; Type I collagen; Matrix (chemical analysis); Chemistry; In vivo; Biomedical engineering; Tendon; In vitro; Chromatography; Biochemistry; Anatomy; Biology; Biotechnology","score_opus":0.015876751229138737,"score_gpt":0.3207665191945391,"score_spread":0.30488976796540035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002192590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6228975,0.00012470783,0.108736895,0.0004125435,0.0007568729,0.26468986,0.00094116386,0.00044791,0.0009925327],"genre_scores_gemma":[0.82495564,0.0000031779555,0.04183171,0.00011181503,0.00038320388,0.12990196,0.0005586291,0.000035984045,0.0022178998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992868,0.000019350684,0.00023250689,0.00023858724,0.00011299678,0.00010980694],"domain_scores_gemma":[0.99930596,0.00007680645,0.00013515797,0.0001822536,0.00025866838,0.00004114515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012605393,0.000096433985,0.00014399752,0.00006485593,0.000081979706,0.00010514671,0.00007855767,0.00016845875,0.00006769694],"category_scores_gemma":[0.00009530867,0.00009597874,0.000013412095,0.00022877072,0.000014723109,0.0002672628,0.000017588216,0.000052164298,0.00001549237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015825812,0.00003858946,0.0001742089,0.000051404626,0.0000026237074,2.1588926e-7,0.000030536732,0.00027958947,0.99598265,0.0009585519,0.0018475222,0.00047587324],"study_design_scores_gemma":[0.0002574297,0.00006881404,0.0013450312,0.000035610894,0.000008237403,0.0000014526934,0.0000041128683,0.00031703676,0.64246696,0.00008296459,0.3553248,0.00008751703],"about_ca_topic_score_codex":0.00006146506,"about_ca_topic_score_gemma":0.00008469307,"teacher_disagreement_score":0.35351565,"about_ca_system_score_codex":0.0000423421,"about_ca_system_score_gemma":0.00006421069,"threshold_uncertainty_score":0.39138997},"labels":[],"label_agreement":null},{"id":"W2002778633","doi":"10.1038/nprot.2010.83","title":"Detecting interactions with membrane proteins using a membrane two-hybrid assay in yeast","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Yeast; Computational biology; Saccharomyces cerevisiae; Protein–protein interaction; Two-hybrid screening; Ubiquitin; Membrane protein; Biology; Function (biology); Identification (biology); Membrane; Chemistry; Cell biology; Biochemistry; Bioinformatics; Gene","score_opus":0.015086849332224442,"score_gpt":0.3436006030691446,"score_spread":0.32851375373692016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002778633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96860504,0.000029168466,0.00059144595,0.00011972983,0.00009789281,0.028514951,0.000024028192,0.000021651635,0.0019961065],"genre_scores_gemma":[0.97223157,0.0000010766471,0.0071408385,0.00007716009,0.00039820853,0.019751685,0.000022154429,0.000041296786,0.00033604045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859196,0.000102819045,0.00020600481,0.00043939066,0.0002800802,0.0003797205],"domain_scores_gemma":[0.9991891,0.00001846082,0.000084423154,0.00041070968,0.00018008509,0.00011724695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004370026,0.00019788364,0.00016670852,0.00012212801,0.00011128062,0.00007657292,0.00028094155,0.00022295155,0.000064282955],"category_scores_gemma":[0.00023270355,0.00016012846,0.00006016882,0.00024955746,0.00007310766,0.0000098801165,0.00013676788,0.0014182654,0.000008782381],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003678913,0.00010878819,0.0023342406,0.000069950496,0.000023118426,0.000019966044,0.000019747837,0.00018195847,0.99496293,0.000018369723,0.000016299557,0.0018767302],"study_design_scores_gemma":[0.0011397796,0.0002047328,0.00032064127,0.00011060312,0.0000053029407,0.00017232592,0.000017318394,0.0010938116,0.98121923,0.000019084984,0.01547987,0.0002172846],"about_ca_topic_score_codex":0.0000754693,"about_ca_topic_score_gemma":0.0017294001,"teacher_disagreement_score":0.015463571,"about_ca_system_score_codex":0.000021409101,"about_ca_system_score_gemma":0.00022177669,"threshold_uncertainty_score":0.6529849},"labels":[],"label_agreement":null},{"id":"W2004326614","doi":"10.1038/nprot.2006.5","title":"The comet assay: a method to measure DNA damage in individual cells","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Carcinogens and Genotoxicity Assessment","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1818,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"","keywords":"DNA damage; Comet assay; Biology; DNA; DNA repair; Gel electrophoresis; Population; Molecular biology; Computational biology; Genetics; Medicine","score_opus":0.014980186989158635,"score_gpt":0.33957194411037844,"score_spread":0.3245917571212198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004326614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49120688,0.0015879277,0.041625556,0.00911597,0.00067043037,0.42842793,0.00089907995,0.00014303299,0.026323196],"genre_scores_gemma":[0.86051685,0.000002961875,0.02630565,0.0025699155,0.0007697127,0.1076219,0.00014897397,0.000066090885,0.001997934],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842834,0.00028339765,0.00023366319,0.0003722868,0.00034294534,0.00033935098],"domain_scores_gemma":[0.99926704,0.000046584286,0.00007125892,0.00044553992,0.0001009319,0.00006863278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014849281,0.00017948064,0.00016593604,0.00006137462,0.00012254136,0.000108955835,0.00040541802,0.00039641908,0.000009908004],"category_scores_gemma":[0.00006385192,0.00013184159,0.00009613794,0.00025957817,0.000029409064,0.0000027946292,0.00020395165,0.00042006306,0.000007609622],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014042828,0.00012250329,0.0021105825,0.000017878838,0.000027942522,0.000008554468,0.000026155352,0.000120616496,0.9683375,0.00050234864,0.023513544,0.005071957],"study_design_scores_gemma":[0.0005735011,0.0001721684,0.016401203,0.000019684006,0.00000665118,0.0000040291625,0.000024502431,0.000014360349,0.592602,0.00023279131,0.38978308,0.00016600676],"about_ca_topic_score_codex":0.000046567435,"about_ca_topic_score_gemma":0.0010425027,"teacher_disagreement_score":0.3757355,"about_ca_system_score_codex":0.00003296182,"about_ca_system_score_gemma":0.00010388464,"threshold_uncertainty_score":0.53763443},"labels":[],"label_agreement":null},{"id":"W2005191482","doi":"10.1038/nprot.2007.154","title":"Synthesis of oligo-RNAs with photocaged adenosine 2′-hydroxyls","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Photochromic and Fluorescence Chemistry","field":"Materials Science","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Chemistry; Adenosine; Computational biology; Biochemistry; RNA; Nucleic acid; Biology; Cell biology; Gene","score_opus":0.007779403846510785,"score_gpt":0.2827950578642441,"score_spread":0.2750156540177333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005191482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.882922,0.000108037086,0.0012947895,0.00011135107,0.00010398076,0.09227296,0.00008246913,0.00025569866,0.02284871],"genre_scores_gemma":[0.96327287,8.5199923e-7,0.0048272707,0.00012980387,0.00014012943,0.031387303,0.000002890368,0.000028899969,0.00020997407],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982712,0.00003132098,0.00037564564,0.0003883493,0.0005045881,0.00042885292],"domain_scores_gemma":[0.9987517,0.00017172172,0.00026278046,0.00052290433,0.00015148292,0.00013939138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007967853,0.0002260417,0.00036649802,0.000063424624,0.000082063794,0.00003582094,0.0005517792,0.00038798183,0.00047795047],"category_scores_gemma":[0.0002256148,0.00016531574,0.00006808387,0.00027014187,0.00024441903,0.00014230714,0.00006817412,0.00046166044,0.00004537354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006239381,0.00013238993,0.0007597392,0.0002293924,0.000010282464,0.000034190252,0.00007960066,0.000002540481,0.9970018,0.000106868654,0.0006433445,0.0003758954],"study_design_scores_gemma":[0.0005859067,0.00010601062,0.0011421537,0.00054555805,0.00001559915,0.000035371777,0.00004059476,0.000008828398,0.99481976,0.00011958119,0.002364945,0.00021571934],"about_ca_topic_score_codex":0.000023064262,"about_ca_topic_score_gemma":0.000008860312,"teacher_disagreement_score":0.08035087,"about_ca_system_score_codex":0.00006760156,"about_ca_system_score_gemma":0.00012275451,"threshold_uncertainty_score":0.674138},"labels":[],"label_agreement":null},{"id":"W2005487278","doi":"10.1038/nprot.2013.007","title":"Investigating electron-transfer processes using a biomimetic hybrid bilayer membrane system","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Electrochemical Analysis and Applications","field":"Chemistry","cited_by":71,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biomolecule; Electron transfer; Redox; Bilayer; Membrane; Nicotinamide adenine dinucleotide; Chemistry; Electrochemistry; Raman spectroscopy; X-ray photoelectron spectroscopy; Lipid bilayer; Biological membrane; Materials science; Nanotechnology; Photochemistry; Electrode; Chemical engineering; Inorganic chemistry; Physical chemistry; Organic chemistry; NAD+ kinase; Biochemistry","score_opus":0.013334564146682437,"score_gpt":0.28558544150283754,"score_spread":0.2722508773561551,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005487278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9640355,0.0003081441,0.0009782936,0.0003899929,0.0000072224757,0.029725224,0.000017534196,0.0004430179,0.004095032],"genre_scores_gemma":[0.8898216,0.000001271381,0.00167755,0.00015489239,0.00018860944,0.10790447,0.000028810158,0.00004028494,0.00018250804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983157,0.000018946572,0.00040163842,0.00047951986,0.00032790506,0.00045632612],"domain_scores_gemma":[0.99900824,0.0000808691,0.000102920894,0.00038243583,0.000266482,0.00015903218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010051177,0.0002643054,0.00032497602,0.000063629464,0.00019241248,0.0001635719,0.00036740582,0.0002813667,0.00019566687],"category_scores_gemma":[0.000102644095,0.00020893493,0.000115979004,0.0006170662,0.000061164195,0.00015733473,0.00003636809,0.0007574939,0.000072562434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004016424,0.00006498947,0.00028615617,0.0016040172,0.000055425728,7.530953e-7,0.00001922346,0.000011013924,0.99717957,0.00046061637,0.000119725984,0.00019449677],"study_design_scores_gemma":[0.00029721527,0.000013319637,0.0000045765146,0.0004739295,0.000058049656,0.000027363763,0.000020402891,0.0027343237,0.992611,0.00054692395,0.0029487696,0.00026416322],"about_ca_topic_score_codex":0.000047889876,"about_ca_topic_score_gemma":0.0000036565134,"teacher_disagreement_score":0.07817925,"about_ca_system_score_codex":0.00012335398,"about_ca_system_score_gemma":0.00017151491,"threshold_uncertainty_score":0.85201186},"labels":[],"label_agreement":null},{"id":"W2005966732","doi":"10.1038/nprot.2011.451","title":"Single-mRNA counting using fluorescent in situ hybridization in budding yeast","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"In situ hybridization; Biology; Fluorescence; In situ; Population; Fluorescence in situ hybridization; RNA; Single-cell analysis; Fluorescence microscope; Yeast; Fluorescent labelling; Molecular biology; DNA; Hybridization probe; Budding; Messenger RNA; Cell biology; Cell; Genetics; Chemistry; Gene; Chromosome; Optics","score_opus":0.02775167130117115,"score_gpt":0.3319568170572388,"score_spread":0.3042051457560676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005966732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9828994,0.00039855565,0.0012230685,0.00006958785,0.0001616127,0.013980798,0.0000028275924,0.000013654128,0.0012504467],"genre_scores_gemma":[0.99366415,0.0000035728704,0.0010725299,0.00014025085,0.00029167844,0.0047494266,0.000031324897,0.00001653124,0.000030565046],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915886,0.000060486982,0.00019449757,0.00020998759,0.00013744704,0.00023874785],"domain_scores_gemma":[0.9996303,0.0000032436565,0.00009799909,0.0001729768,0.000049951304,0.000045542514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027203932,0.000102214886,0.00009038642,0.00009331038,0.000033048687,0.000027282833,0.00010122719,0.00024195021,0.00000632468],"category_scores_gemma":[0.00009653996,0.00010107725,0.000027073114,0.00020753892,0.000013993506,0.000013749959,0.00005049667,0.00021110046,0.0000022430468],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004711227,0.000100887846,0.045749363,0.000027389115,0.000001925174,5.006914e-7,0.000053831413,0.00007805369,0.9513278,0.000050657836,0.00018515601,0.0023773457],"study_design_scores_gemma":[0.0006001958,0.000025569505,0.018877298,0.00018130011,0.0000019576914,0.0000043859313,0.00006137478,0.00020274473,0.9472507,0.000012777666,0.032638628,0.00014305342],"about_ca_topic_score_codex":0.000005945769,"about_ca_topic_score_gemma":0.000023932454,"teacher_disagreement_score":0.032453474,"about_ca_system_score_codex":0.000082853585,"about_ca_system_score_gemma":0.000048666458,"threshold_uncertainty_score":0.41218105},"labels":[],"label_agreement":null},{"id":"W2006474870","doi":"10.1038/nprot.2012.109","title":"One-step 18F-labeling of peptides for positron emission tomography imaging using the SiFA methodology","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Radiopharmaceutical Chemistry and Applications","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Positron emission tomography; Pet imaging; Radiochemistry; Nuclide; Positron; Molecular imaging; Chemistry; Combinatorial chemistry; Nuclear medicine; Medicine; Physics; In vivo; Biology","score_opus":0.15278860765729385,"score_gpt":0.48453313012449706,"score_spread":0.3317445224672032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006474870","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.39173487,0.009201043,0.1598243,0.013240189,0.00033454323,0.41926005,0.000111513815,0.00040213965,0.005891357],"genre_scores_gemma":[0.73558235,0.0000025519141,0.22851047,0.0007100558,0.0005979402,0.034486867,0.000014228284,0.000026923479,0.0000686153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999063,0.00006975038,0.00024980676,0.00017067874,0.00016438655,0.00028234514],"domain_scores_gemma":[0.9989129,0.00041352955,0.00013254308,0.0002701562,0.0001474548,0.0001234162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007529374,0.00011793354,0.00024241238,0.00004173877,0.00014024928,0.000009866221,0.00013277319,0.00015325753,0.00001531499],"category_scores_gemma":[0.00031008766,0.00008282765,0.0001414899,0.00021878861,0.00009198661,0.00007075521,0.000034405555,0.0005360709,5.264937e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002679631,0.00016227293,0.007875437,0.00046500165,0.000043664382,2.8767835e-7,0.00007403601,0.0000033301424,0.9853408,0.00070174644,0.00020387559,0.0048616207],"study_design_scores_gemma":[0.0009366546,0.000041321546,0.00074376666,0.00031571105,0.00018500138,0.000040361418,0.000069221416,0.0009851902,0.97660035,0.0005200159,0.019462999,0.00009939944],"about_ca_topic_score_codex":0.0000026130972,"about_ca_topic_score_gemma":6.74211e-8,"teacher_disagreement_score":0.3847732,"about_ca_system_score_codex":0.00003032481,"about_ca_system_score_gemma":0.00003934358,"threshold_uncertainty_score":0.33776137},"labels":[],"label_agreement":null},{"id":"W2008177395","doi":"10.1038/nprot.2013.105","title":"Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Synthetic biology; Biology; Computational biology; Gene; Function (biology); Escherichia coli; Functional genomics; Plasmid; Gene expression; Regulation of gene expression; Metabolic engineering; Transfer RNA; Genetics; Genomics; RNA; Genome","score_opus":0.011080395181415641,"score_gpt":0.28463927002891637,"score_spread":0.27355887484750074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008177395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86277974,0.00032080524,0.093013614,0.00007985721,0.000029502631,0.043742273,0.0000040093423,0.000010441639,0.000019785233],"genre_scores_gemma":[0.9259978,0.0000053283534,0.044178985,0.00018644289,0.000041378433,0.029483937,0.0000027374242,0.00002067857,0.0000827176],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929947,0.00005865011,0.0001679245,0.0002359837,0.000077544486,0.00016044923],"domain_scores_gemma":[0.9995245,0.000024993911,0.000041733067,0.00026416275,0.00006563015,0.00007903357],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013760902,0.00012056766,0.00014881157,0.000044398435,0.000015765383,0.000020099984,0.00009946438,0.00027311887,0.0000074377417],"category_scores_gemma":[0.000108344444,0.00010677283,0.00002670732,0.00006188927,0.000022222488,0.0000036694876,0.00005534858,0.00014075739,0.0000015599319],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010650959,0.000029956296,0.00092209503,0.000040510073,0.000007695829,8.52299e-7,0.000026596494,0.0022472306,0.9952217,0.0000059862828,0.00033139362,0.0010594868],"study_design_scores_gemma":[0.0006578438,0.00019462749,0.013544223,0.00009429735,0.0000038081628,0.0000023232503,0.000004649298,0.0004641715,0.9815586,0.000029289118,0.003319429,0.00012672863],"about_ca_topic_score_codex":0.0000071125783,"about_ca_topic_score_gemma":0.0000036838294,"teacher_disagreement_score":0.06321808,"about_ca_system_score_codex":0.0000071398417,"about_ca_system_score_gemma":0.000025739666,"threshold_uncertainty_score":0.43540698},"labels":[],"label_agreement":null},{"id":"W2008235196","doi":"10.1038/nprot.2009.200","title":"A simple slot blot for the detection of virtually all subtypes of the influenza A viral hemagglutinins using universal antibodies targeting the fusion peptide","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Ottawa; Health Canada","funders":"","keywords":"Virology; Hemagglutinin (influenza); Epitope; Fusion protein; Antibody; Peptide; Western blot; Virus; Biology; Dot blot; Influenza A virus; Peptide vaccine; Molecular biology; Recombinant DNA; Immunology; Biochemistry","score_opus":0.05853630539572375,"score_gpt":0.40561177476392474,"score_spread":0.347075469368201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008235196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8553863,0.0014110726,0.0006722659,0.0013814984,0.00008212785,0.14027111,0.000064695676,0.000075893746,0.00065503205],"genre_scores_gemma":[0.99419713,0.000012463919,0.000637366,0.0011134804,0.00019262143,0.0037778053,0.000001685144,0.000021366832,0.00004606756],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982033,0.00015365882,0.0004164397,0.00022655302,0.0006330407,0.00036701266],"domain_scores_gemma":[0.9979712,0.0005323336,0.00036961184,0.00043715906,0.00065238564,0.000037330585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009977178,0.00020341671,0.0003487301,0.000087988425,0.00049768394,0.000023156666,0.00036954464,0.0001987583,0.0000064670057],"category_scores_gemma":[0.0020925791,0.00009399958,0.00024092369,0.00035323622,0.00032371798,0.00010642116,0.00019319665,0.0007762851,6.8431535e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035414598,0.00015923574,0.0065087616,0.0003168901,0.0002261089,0.0000020227299,0.0019729123,0.00030623435,0.9816796,0.0010875975,0.00040963918,0.0037895232],"study_design_scores_gemma":[0.0049011083,0.0023708243,0.07694637,0.00085958315,0.00032489953,0.000016519285,0.0017387383,0.0062848763,0.83626294,0.0010970602,0.06892411,0.0002729743],"about_ca_topic_score_codex":0.00010096496,"about_ca_topic_score_gemma":0.000057437952,"teacher_disagreement_score":0.14541668,"about_ca_system_score_codex":0.00009217729,"about_ca_system_score_gemma":0.00019982281,"threshold_uncertainty_score":0.38331917},"labels":[],"label_agreement":null},{"id":"W2010560388","doi":"10.1038/nprot.2007.160","title":"Peptide arrays on cellulose support: SPOT synthesis, a time and cost efficient method for synthesis of large numbers of peptides in a parallel and addressable fashion","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Chemical Synthesis and Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":279,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Peptide; Cellulose; Combinatorial chemistry; Cleavage (geology); Amino acid; Chemistry; Membrane; Peptide synthesis; Biochemistry; Materials science","score_opus":0.00903648897586372,"score_gpt":0.315293399113369,"score_spread":0.3062569101375053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010560388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96094984,0.00020936076,0.006150739,0.00016773008,0.000011631701,0.029962119,0.000355937,0.000013024382,0.002179643],"genre_scores_gemma":[0.97830874,0.000016101356,0.012483965,0.00006491008,0.000039952673,0.008863258,0.000026812566,0.000024101197,0.00017217919],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866235,0.00007440747,0.00038903483,0.00040991325,0.00017469225,0.00028958268],"domain_scores_gemma":[0.9988785,0.00048306354,0.00022322845,0.00024142365,0.000083366285,0.00009042558],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012378064,0.00019116807,0.00044276862,0.000090115915,0.000033200326,0.000012060693,0.00013253759,0.00038193088,0.000030063145],"category_scores_gemma":[0.0009003158,0.00015979593,0.0001468449,0.00012492505,0.00007005816,0.0000035061344,0.00006521312,0.0001505535,8.426714e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010504937,0.00044869908,0.002569215,0.0003694224,0.00007356615,0.0000025365553,0.000046797955,0.00006279647,0.9889553,0.0001687358,0.0004938226,0.0057585794],"study_design_scores_gemma":[0.0006872578,0.00016159362,0.0009989509,0.00026007678,0.000057774792,0.0000029841776,0.0000658951,0.0005674446,0.992231,0.00003359254,0.004750201,0.00018320268],"about_ca_topic_score_codex":0.000014961587,"about_ca_topic_score_gemma":0.000055763965,"teacher_disagreement_score":0.021098861,"about_ca_system_score_codex":0.00001667287,"about_ca_system_score_gemma":0.00002949394,"threshold_uncertainty_score":0.6516289},"labels":[],"label_agreement":null},{"id":"W2010756475","doi":"10.1038/nprot.2014.184","title":"Production and analysis of immunomodulatory excretory-secretory products from the mouse gastrointestinal nematode Heligmosomoides polygyrus bakeri","year":2014,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Heligmosomoides polygyrus; Excretory system; Nematode; Biology; Microbiology; Ecology; Anatomy","score_opus":0.01131356002215461,"score_gpt":0.29035803920888964,"score_spread":0.27904447918673503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010756475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98155355,0.0016659593,0.00020302943,0.0006371618,0.00021305917,0.015142316,0.00014341895,0.000093829956,0.00034768577],"genre_scores_gemma":[0.99094063,0.000007160262,0.0005794102,0.00016883739,0.00012880497,0.007134884,0.00022271124,0.000020364643,0.0007972127],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985254,0.00030634797,0.00036921122,0.0004644289,0.00007618108,0.0002584629],"domain_scores_gemma":[0.99851257,0.00023046693,0.00032221718,0.0006706725,0.00023928407,0.000024813146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038955215,0.0002216129,0.00042060725,0.00015478057,0.0002494091,0.000032172742,0.00026741662,0.00023561229,0.00022565742],"category_scores_gemma":[0.0008604359,0.00015702791,0.00013598437,0.00036820828,0.00028629287,0.0001500719,0.000083543215,0.00080848875,0.000035244713],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035465608,0.00012710993,0.083601564,0.000035889672,0.00073304307,6.662395e-7,0.00028478284,0.00002727842,0.91065896,0.00068538875,0.0027171285,0.0007735479],"study_design_scores_gemma":[0.00072802533,0.00038440572,0.5482385,0.00030937255,0.00070400024,0.00010930077,0.0002462425,0.00008699483,0.39928094,0.00018167232,0.04937079,0.00035975466],"about_ca_topic_score_codex":0.00022582583,"about_ca_topic_score_gemma":0.00010342915,"teacher_disagreement_score":0.511378,"about_ca_system_score_codex":0.000032358963,"about_ca_system_score_gemma":0.00005755974,"threshold_uncertainty_score":0.6403412},"labels":[],"label_agreement":null},{"id":"W2012124466","doi":"10.1038/nprot.2008.8","title":"Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography","year":2008,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Institute of Population and Public Health","funders":"","keywords":"Chromatin immunoprecipitation; Histone; Chromatin; ChIP-on-chip; Nucleosome; Immunoprecipitation; Epigenetics; Biology; Histone code; ChIA-PET; Histone methylation; Molecular biology; ChIP-sequencing; Genetics; Computational biology; Chemistry; Cell biology; DNA; Gene; DNA methylation; Gene expression; Promoter","score_opus":0.011012711663735526,"score_gpt":0.2684862351618524,"score_spread":0.25747352349811686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012124466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9847459,0.0012382095,0.004211509,0.00000843443,0.000020645282,0.009072518,0.00055983313,0.000010648458,0.00013228643],"genre_scores_gemma":[0.9873153,0.00019317205,0.009616255,0.000011263116,0.000020038107,0.0018793303,0.0008931243,0.00003721365,0.0000343165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99803084,0.00012247488,0.0009013082,0.00040464,0.00032205452,0.00021870162],"domain_scores_gemma":[0.9976447,0.000034687888,0.0011221925,0.00067368476,0.00046624636,0.000058454905],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017990777,0.00025975524,0.0006165342,0.0003529773,0.00012126196,0.000008005925,0.00037153697,0.00043951737,0.00004136653],"category_scores_gemma":[0.000047255242,0.0002652934,0.00036311412,0.001111001,0.0002798503,0.00001001048,0.00011555779,0.00015322781,9.071911e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086591084,0.00026334217,0.00546247,0.00012518645,0.0008813639,4.798399e-7,0.00046394957,0.0034138935,0.98900616,0.000036014226,0.0001307551,0.00012978012],"study_design_scores_gemma":[0.00078776083,0.00037770125,0.030088637,0.00007753491,0.00020049208,0.0000066204366,0.00004705999,0.021295318,0.9465435,0.00005748705,0.00025398444,0.00026391025],"about_ca_topic_score_codex":0.000041212283,"about_ca_topic_score_gemma":0.000018625942,"teacher_disagreement_score":0.04246268,"about_ca_system_score_codex":0.00005801515,"about_ca_system_score_gemma":0.00009205593,"threshold_uncertainty_score":0.9999799},"labels":[],"label_agreement":null},{"id":"W2012672431","doi":"10.1038/nprot.2009.35","title":"Monitoring detergent-mediated solubilization and reconstitution of lipid membranes by isothermal titration calorimetry","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Isothermal titration calorimetry; Micelle; Titration; Membrane; Biological membrane; Amphiphile; Solubilization; Chemistry; Liposome; Biomolecule; Lipid bilayer; Calorimetry; Chromatography; Biophysics; Biochemistry; Organic chemistry; Biology; Thermodynamics; Aqueous solution","score_opus":0.008637423210151797,"score_gpt":0.29143882134710875,"score_spread":0.2828013981369569,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012672431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9878601,0.00032978598,0.00037509357,0.00007077813,0.00022015229,0.010732785,0.0000251485,0.000023424376,0.00036275413],"genre_scores_gemma":[0.9977413,0.000035947938,0.00039153034,0.000069499765,0.00039640922,0.0011773822,0.00011266681,0.000008196603,0.000067080226],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993443,0.000031702595,0.00018008334,0.00021401276,0.00011157426,0.0001183351],"domain_scores_gemma":[0.9996335,0.000005386457,0.00009494537,0.00014042403,0.000084417494,0.000041322277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008757662,0.00011503576,0.00011551359,0.000034627174,0.00004769575,0.000015945621,0.00007181824,0.00036940307,0.000008495343],"category_scores_gemma":[0.0000622871,0.00010096463,0.000036160938,0.000081430306,0.00003808291,0.000012986714,0.000012688485,0.00013499691,7.216075e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010170551,0.00003732055,0.005819335,0.00004736752,0.0000076249107,2.610778e-7,0.00001498458,0.0000020866266,0.9881833,0.000017633058,0.00013006479,0.005638299],"study_design_scores_gemma":[0.00052933686,0.00024122339,0.004888992,0.000042168034,0.000011801608,0.0000058847772,0.0000065947684,0.000010235474,0.98804766,0.000008979555,0.0060971277,0.00011000611],"about_ca_topic_score_codex":0.0000030923666,"about_ca_topic_score_gemma":0.0000021579608,"teacher_disagreement_score":0.009881209,"about_ca_system_score_codex":0.0000078702105,"about_ca_system_score_gemma":0.000037544025,"threshold_uncertainty_score":0.4117218},"labels":[],"label_agreement":null},{"id":"W2013117207","doi":"10.1038/nprot.2008.93","title":"An optimized method for measurement of gamma-H2AX in blood mononuclear and cultured cells","year":2008,"lang":"en","type":"article","venue":"Nature Protocols","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Flow cytometry; Molecular biology; Cell cycle; Histone; Peripheral blood mononuclear cell; Lysis buffer; Biology; Staining; Lysis; DNA; Cytometry; Cell; Cell culture; Cell biology; Chemistry; Biochemistry; In vitro; Genetics","score_opus":0.018885427636871354,"score_gpt":0.3176287120283324,"score_spread":0.2987432843914611,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013117207","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48975667,0.0015907878,0.101242386,0.0002725275,0.0002113497,0.40518385,0.00018050933,0.00013973298,0.0014221726],"genre_scores_gemma":[0.14774331,0.000030513953,0.78703517,0.00020725119,0.00012464335,0.064605184,0.000028632956,0.000055433666,0.00016985029],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988757,0.00011470686,0.00023312506,0.0003804258,0.00020250572,0.00019354204],"domain_scores_gemma":[0.99927783,0.000008710906,0.00011019089,0.0003301107,0.00020029258,0.00007288037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005899714,0.00015685969,0.00023987943,0.000043337455,0.000038989634,0.000009646517,0.00018310192,0.00044785577,0.0000048398715],"category_scores_gemma":[0.000097355805,0.00013757257,0.00008041934,0.000068177345,0.000031323572,0.000005427011,0.000047419842,0.00016734225,3.188284e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060007133,0.00022720595,0.00007485326,0.0000785716,0.00003938919,0.0000031317643,0.00009165457,0.00008618399,0.9978304,0.000056114117,0.00032570117,0.000586724],"study_design_scores_gemma":[0.0035388959,0.0008693459,0.000105589614,0.00003947208,0.000018046087,0.000014486794,0.00001776114,0.000331113,0.98765415,0.00015883855,0.0070931055,0.00015918269],"about_ca_topic_score_codex":0.000007435101,"about_ca_topic_score_gemma":0.000011076862,"teacher_disagreement_score":0.6857928,"about_ca_system_score_codex":0.000011491348,"about_ca_system_score_gemma":0.00006728225,"threshold_uncertainty_score":0.5610047},"labels":[],"label_agreement":null},{"id":"W2013379899","doi":"10.1038/nprot.2014.093","title":"Antibiotic resistance–mediated isolation of scaffold-specific natural product producers","year":2014,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Antibiotics; Drug discovery; Antibiotic resistance; Scaffold; Isolation (microbiology); Antibacterial activity; Computational biology; Biology; Identification (biology); Biotechnology; Bacteria; Microbiology; Computer science; Bioinformatics; Genetics; Database","score_opus":0.011909219504352291,"score_gpt":0.2761246751790102,"score_spread":0.2642154556746579,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013379899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.584099,0.00710353,0.000094575276,0.03167641,0.0020873689,0.35951075,0.00009364749,0.0009089821,0.014425746],"genre_scores_gemma":[0.9907126,0.000017101935,0.0053477846,0.0003637954,0.0009347357,0.00048797458,0.00007010577,0.00004438103,0.0020215434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976911,0.0001251969,0.00053016894,0.0007503223,0.0005208915,0.00038232104],"domain_scores_gemma":[0.99804056,0.00008796998,0.00033284543,0.0008026342,0.0006273289,0.00010864096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007465953,0.00030269756,0.0005844949,0.0002234285,0.00009977567,0.000035991157,0.00023167272,0.00035583344,0.00007455289],"category_scores_gemma":[0.0013514564,0.0002135203,0.00015781312,0.00077938364,0.00015187576,0.0001667856,0.00004924159,0.0008588219,0.00003732022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013888008,0.00023230199,0.001647653,0.0010617619,0.00005491551,0.000004233643,0.00006297715,5.503393e-7,0.9633408,0.0005535228,0.023757469,0.007895021],"study_design_scores_gemma":[0.0013230366,0.00024958578,0.014298876,0.0009596498,0.0000438161,0.000018283286,0.000008653379,0.000030996714,0.77348006,0.00008596769,0.20922813,0.00027295717],"about_ca_topic_score_codex":0.000004156288,"about_ca_topic_score_gemma":0.000009270716,"teacher_disagreement_score":0.4066136,"about_ca_system_score_codex":0.00008942358,"about_ca_system_score_gemma":0.0001081094,"threshold_uncertainty_score":0.8707105},"labels":[],"label_agreement":null},{"id":"W2014794373","doi":"10.1038/nprot.2012.147","title":"Fluorescence resonance energy transfer microscopy as demonstrated by measuring the activation of the serine/threonine kinase Akt","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; National Cancer Institute; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Förster resonance energy transfer; Photobleaching; Microscopy; Fluorescence-lifetime imaging microscopy; Fluorescence microscope; Fluorescence; Materials science; Chemistry; Biophysics; Optics; Biology; Physics","score_opus":0.005518325933008227,"score_gpt":0.272873464490296,"score_spread":0.26735513855728776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014794373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8139289,0.0025539089,0.04788994,0.003600344,0.00020138524,0.13032417,0.00013990026,0.00023585385,0.0011256038],"genre_scores_gemma":[0.9543038,0.000043871998,0.0062147584,0.00070090895,0.000075513955,0.038230337,0.000028364742,0.000045015404,0.00035741949],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987204,0.00010764511,0.00027150297,0.00037893796,0.00023777732,0.0002837431],"domain_scores_gemma":[0.99891555,0.00001656623,0.000107053704,0.00064899476,0.00026625878,0.000045596968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014085522,0.00023079394,0.00015837514,0.00002097764,0.00015575014,0.00003834833,0.00067143067,0.00040784577,0.000018527766],"category_scores_gemma":[0.00012816033,0.00014333404,0.0000901409,0.00025287637,0.00022657495,0.000021473175,0.00010553035,0.00044350183,0.0000018237063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001233786,0.000054208947,0.00071559194,0.000027441947,0.000010794334,2.4976413e-7,0.000015054022,0.000004710292,0.9922691,0.00019713244,0.0025640216,0.004018341],"study_design_scores_gemma":[0.0003176086,0.00015154613,0.0008214918,0.00020094632,0.0000044393555,0.000005568899,0.000010679472,0.00002159114,0.9659113,0.00025816797,0.032133788,0.00016283334],"about_ca_topic_score_codex":0.00010230952,"about_ca_topic_score_gemma":0.00002047578,"teacher_disagreement_score":0.14037493,"about_ca_system_score_codex":0.00002897369,"about_ca_system_score_gemma":0.00011068988,"threshold_uncertainty_score":0.58449924},"labels":[],"label_agreement":null},{"id":"W2015115839","doi":"10.1038/nprot.2009.150","title":"A protocol for islet isolation from mouse pancreas","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":341,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Islet; Pancreas; Collagenase; Isolation (microbiology); Biology; Computational biology; Diabetes mellitus; Bioinformatics; Endocrinology; Biochemistry; Enzyme","score_opus":0.030210522004018324,"score_gpt":0.377546688036134,"score_spread":0.3473361660321157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015115839","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002668258,0.0000052106266,0.0014777636,0.0014294698,0.000023257446,0.986598,0.000034210272,0.00023083609,0.0075329854],"genre_scores_gemma":[0.0049767485,5.772951e-8,0.014403324,0.004509755,0.000606913,0.9733694,0.000076841396,0.000020453626,0.0020365152],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99887246,0.00003303698,0.0002717992,0.00031635154,0.00026148531,0.0002448935],"domain_scores_gemma":[0.9990737,0.00010698789,0.00012263726,0.00035326186,0.00020371791,0.00013968989],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016814085,0.00018713358,0.00033058526,0.00007971247,0.00007550326,0.00004295584,0.00008077256,0.0004062384,0.00029095716],"category_scores_gemma":[0.00053924526,0.0001416365,0.0001308199,0.0001534483,0.000018967065,0.000114627765,0.000009090421,0.00037584626,0.000045931934],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.020442786,0.002387163,0.020586297,0.00090534973,0.00022495212,0.000015994092,0.00029194815,0.0000060332545,0.6181925,0.0061786203,0.2836908,0.047077555],"study_design_scores_gemma":[0.016807355,0.0022669823,0.013273142,0.00056825427,0.000064361004,0.000006374323,0.000015613548,0.0010560692,0.19793692,0.0064813695,0.76122534,0.00029822034],"about_ca_topic_score_codex":0.0000069292046,"about_ca_topic_score_gemma":6.8072137e-7,"teacher_disagreement_score":0.47753453,"about_ca_system_score_codex":0.0000617437,"about_ca_system_score_gemma":0.00010817028,"threshold_uncertainty_score":0.5775768},"labels":[],"label_agreement":null},{"id":"W2015830307","doi":"10.1038/nprot.2010.178","title":"Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry","year":2011,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":110,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Proteases; Protease; Proteome; Peptide; Peptide library; Tandem mass spectrometry; Biology; Biochemistry; Chemistry; Proteomics; Peptide sequence; Mass spectrometry; Enzyme; Chromatography","score_opus":0.010441102659512699,"score_gpt":0.24725006291760188,"score_spread":0.23680896025808917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015830307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9385561,0.00005385942,0.008140381,0.00008765046,0.000005868784,0.05067828,0.00038400642,0.00008321143,0.002010668],"genre_scores_gemma":[0.8959922,0.000023229648,0.041209016,0.00002698389,0.000051313138,0.0622423,0.000037460304,0.000038525635,0.00037896054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990836,0.000020395577,0.00028891081,0.00028222302,0.00016953336,0.00015536937],"domain_scores_gemma":[0.9989652,0.00002920829,0.00049543916,0.00036282907,0.00010240079,0.00004490839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000654327,0.00019058937,0.00027070215,0.000045009398,0.000099298144,0.000027354148,0.00021776825,0.00027534357,0.0000682264],"category_scores_gemma":[0.000047957918,0.00014495906,0.000048267397,0.00017045156,0.0002839795,0.00024648907,0.00013734253,0.00043158449,3.1739503e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015413067,0.00007315885,0.005854664,0.00023701617,0.000021111522,2.3031137e-7,0.000370189,1.6510711e-8,0.9921325,0.0007347265,0.000012173566,0.0004100721],"study_design_scores_gemma":[0.00031812687,0.00007357361,0.007997833,0.00026935723,0.000012807267,0.0000028028812,0.000067326095,0.000007864549,0.9840706,0.0063615483,0.0006675765,0.00015060006],"about_ca_topic_score_codex":0.000009781225,"about_ca_topic_score_gemma":7.7123224e-7,"teacher_disagreement_score":0.042563863,"about_ca_system_score_codex":0.000023618642,"about_ca_system_score_gemma":0.00005103343,"threshold_uncertainty_score":0.5911259},"labels":[],"label_agreement":null},{"id":"W2017583213","doi":"10.1038/nprot.2007.98","title":"Uptake and release protocol for assessing membrane binding and permeation by way of isothermal titration calorimetry","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"thermodynamics and calorimetric analyses","field":"Chemistry","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Isothermal titration calorimetry; Membrane; Permeation; Chemistry; Titration; Biological membrane; Biomolecule; Calorimetry; Lipid bilayer; Aqueous solution; Biophysics; Chromatography; Biochemistry; Thermodynamics; Organic chemistry; Biology","score_opus":0.01821471856673561,"score_gpt":0.3531441982364899,"score_spread":0.3349294796697543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017583213","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29513547,0.000081103724,0.018904412,0.00005893715,0.000027826163,0.67911977,0.00010918896,0.000102644255,0.006460626],"genre_scores_gemma":[0.49513778,7.460655e-7,0.0025133088,0.000028522443,0.00013170263,0.5017818,0.00003845408,0.00003367981,0.00033397914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893206,0.000012888967,0.00034150423,0.00028129804,0.00022891424,0.00020335334],"domain_scores_gemma":[0.99925023,0.00013763907,0.0002605489,0.00014931033,0.00012802292,0.000074216034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044729968,0.00016429415,0.00021998699,0.00011089353,0.00011907125,0.00007969274,0.0000857037,0.0004057731,0.0000452521],"category_scores_gemma":[0.0001660733,0.00014236105,0.000054334454,0.00020649433,0.000054720203,0.00019586149,0.000022770202,0.0003044907,3.2684991e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036723187,0.00010582728,0.0028386416,0.0010417667,0.000035708075,0.0000012874211,0.000054250424,0.0000012737772,0.9608844,0.00079146447,0.00010566543,0.033772513],"study_design_scores_gemma":[0.0038578839,0.0001346932,0.0024530226,0.00041211807,0.000057735622,0.000009632903,0.00017464088,0.004332043,0.9718658,0.00033706153,0.016000267,0.00036512833],"about_ca_topic_score_codex":0.0000147007095,"about_ca_topic_score_gemma":0.0000047245358,"teacher_disagreement_score":0.20000231,"about_ca_system_score_codex":0.000050464296,"about_ca_system_score_gemma":0.00003789223,"threshold_uncertainty_score":0.58053154},"labels":[],"label_agreement":null},{"id":"W2017838720","doi":"10.1038/nprot.2009.181","title":"Protocol for the development of automated high-throughput SPME–GC methods for the analysis of volatile and semivolatile constituents in wine samples","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Analytical Chemistry and Chromatography","field":"Chemistry","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Wine; Solid-phase microextraction; Sample preparation; Chromatography; Throughput; Gas chromatography; Analyte; Protocol (science); Extraction (chemistry); Sample (material); Gas chromatography–mass spectrometry; Chemistry; Computer science; Mass spectrometry; Food science","score_opus":0.034175235976771315,"score_gpt":0.4271510044247014,"score_spread":0.3929757684479301,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017838720","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018247869,0.000029934497,0.045202088,0.00022155262,0.000030732794,0.9352384,0.00037285188,0.0001396895,0.00051687035],"genre_scores_gemma":[0.09428175,1.1691772e-7,0.10967351,0.000020473992,0.000040234852,0.795893,0.000030222945,0.000014961737,0.000045699464],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998516,0.00002479409,0.0006875426,0.00031801077,0.00021222563,0.00024138596],"domain_scores_gemma":[0.9969237,0.001908269,0.00040060724,0.0004652548,0.0002486638,0.000053513868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007861929,0.00022476116,0.00051843835,0.00007944999,0.00015762464,0.000029131374,0.0004178384,0.00043156545,0.00023073073],"category_scores_gemma":[0.00051066896,0.0001289157,0.00021634072,0.00061485445,0.0003004434,0.000056005894,0.000072842886,0.00047806263,9.9374795e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017703176,0.00085253967,0.045049638,0.0067688394,0.0043773097,6.477139e-7,0.0009090258,0.00017498151,0.91246927,0.0022363947,0.0014659297,0.023925114],"study_design_scores_gemma":[0.002530452,0.000029532504,0.0055887685,0.00022860689,0.00047157472,0.0000011412603,0.00010271779,0.0435379,0.89462864,0.001003682,0.051647443,0.0002295134],"about_ca_topic_score_codex":0.000016193588,"about_ca_topic_score_gemma":0.00007341156,"teacher_disagreement_score":0.13934538,"about_ca_system_score_codex":0.000017978191,"about_ca_system_score_gemma":0.00016676729,"threshold_uncertainty_score":0.52570295},"labels":[],"label_agreement":null},{"id":"W2017892687","doi":"10.1038/nprot.2006.443","title":"Fabrication of cells containing gel modules to assemble modular tissue-engineered constructs","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":63,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Modular design; Fabrication; Tissue engineering; Nanotechnology; Materials science; Biomedical engineering; Computer science; Engineering","score_opus":0.010851836829291918,"score_gpt":0.3030803111495211,"score_spread":0.2922284743202292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017892687","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6257862,0.0005200377,0.17340474,0.00045459755,0.0007248591,0.16748366,0.00011620257,0.0016375628,0.029872173],"genre_scores_gemma":[0.94982266,0.0000010547541,0.032019507,0.000021934296,0.00016702611,0.017773863,0.00001281276,0.00004283086,0.00013829207],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984761,0.00003479172,0.00034417608,0.00023581469,0.0005392576,0.00036987787],"domain_scores_gemma":[0.99907297,0.000129257,0.00004838401,0.00037247475,0.00025256947,0.0001243357],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037221255,0.0001703046,0.00025870444,0.00020742131,0.000034708883,0.00004484007,0.00035683482,0.0003578839,0.000038208087],"category_scores_gemma":[0.00030680507,0.00016935614,0.000041171228,0.000504597,0.000045006716,0.0000839085,0.0000712361,0.00057224167,0.000044012366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019646322,0.000033895925,0.00035353005,0.00037297665,0.000020510102,0.0000051165807,0.00003206377,0.0153222075,0.9651252,0.0025622544,0.0035056826,0.012646912],"study_design_scores_gemma":[0.0004263331,0.00008598829,0.0044166013,0.00020037903,0.0000042649963,0.0000023726652,0.000008398891,0.010883009,0.95581025,0.0010755918,0.026890397,0.00019642059],"about_ca_topic_score_codex":0.000030619052,"about_ca_topic_score_gemma":0.0000034815232,"teacher_disagreement_score":0.3240365,"about_ca_system_score_codex":0.000096505,"about_ca_system_score_gemma":0.000035629288,"threshold_uncertainty_score":0.6906143},"labels":[],"label_agreement":null},{"id":"W2019365078","doi":"10.1038/nprot.2012.038","title":"A simple and rapid nonviral approach to efficiently transfect primary tissue–derived cells using polyethylenimine","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Polyethylenimine; Transfection; Stromal cell; Cell culture; Chemistry; Cationic polymerization; Molecular biology; Cell biology; Biophysics; Biology; Genetics; Cancer research","score_opus":0.016704606032107848,"score_gpt":0.3002913838120187,"score_spread":0.28358677777991087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019365078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96495575,0.0009279506,0.005708037,0.000032940643,0.00008583267,0.026616903,0.000042837193,0.000019474104,0.0016103013],"genre_scores_gemma":[0.98563874,0.000008735811,0.0048848507,0.000948044,0.0004201424,0.00784428,0.00006890026,0.000031703712,0.00015459224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988123,0.000069753885,0.0001795843,0.000372723,0.00015436787,0.0004112795],"domain_scores_gemma":[0.9994195,0.00000816488,0.00004503307,0.00029283122,0.0000573883,0.00017706976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021386927,0.00022012265,0.00020755912,0.000059718954,0.00008285289,0.000038664944,0.00018799429,0.00038557086,0.000012846422],"category_scores_gemma":[0.000019004507,0.0001928047,0.0000698429,0.00010929488,0.00004797646,0.000011072824,0.00010620786,0.00024272157,0.000008479995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002617417,0.00016392593,0.00045645837,0.000081345206,0.00002677616,7.9046845e-7,0.00013978584,0.000030764528,0.99328166,0.000006881436,0.0008728416,0.0046770056],"study_design_scores_gemma":[0.0006212985,0.00055620406,0.0016081075,0.000025256131,0.000017885106,0.000019167785,0.000027971828,0.000045594545,0.96023846,0.0000034667892,0.036574736,0.00026188442],"about_ca_topic_score_codex":0.00000968877,"about_ca_topic_score_gemma":0.0000015501516,"teacher_disagreement_score":0.035701893,"about_ca_system_score_codex":0.000017603134,"about_ca_system_score_gemma":0.000043331456,"threshold_uncertainty_score":0.78623474},"labels":[],"label_agreement":null},{"id":"W2023535481","doi":"10.1038/nprot.2011.335","title":"Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry","year":2011,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3236,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Chromatography; Metabolome; Mass spectrometry; Metabolomics; Biomarker discovery; Gas chromatography; Gas chromatography–mass spectrometry; Chemistry; Sample preparation; Liquid chromatography–mass spectrometry; Proteomics; Biochemistry","score_opus":0.013795648924210228,"score_gpt":0.28590592240973023,"score_spread":0.27211027348552,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023535481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9669595,0.0028018728,0.0028526972,0.000037409864,0.00005392252,0.02693601,0.00016727347,0.00002363126,0.0001676803],"genre_scores_gemma":[0.8396689,0.00019889578,0.14663847,0.00012591296,0.00014092824,0.01315218,0.000013997582,0.000048925143,0.000011736124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842936,0.00003356918,0.0003375005,0.0005832808,0.00016715836,0.00044913602],"domain_scores_gemma":[0.9991514,0.00001575331,0.0001993518,0.0002996371,0.00018833391,0.00014552985],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003567367,0.00030636947,0.0005102115,0.00033902633,0.00015183476,0.000029657313,0.00018650913,0.0003462083,0.000008458322],"category_scores_gemma":[0.0001306066,0.00026735562,0.00015219972,0.00047323285,0.00009273469,0.000011398643,0.00017137009,0.00018488166,2.3135219e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069429877,0.000116962896,0.021176519,0.0005399821,0.00028268073,9.0597086e-7,0.00012842656,5.635622e-7,0.97475016,0.002180832,0.00006677401,0.00006189092],"study_design_scores_gemma":[0.0015215331,0.0010497607,0.0080759125,0.00008479432,0.000093936826,0.000021323567,0.00016569874,0.00012990003,0.98515224,0.00060965907,0.0027509853,0.0003442253],"about_ca_topic_score_codex":0.000004801368,"about_ca_topic_score_gemma":0.000026716827,"teacher_disagreement_score":0.14378577,"about_ca_system_score_codex":0.000004572296,"about_ca_system_score_gemma":0.000062760024,"threshold_uncertainty_score":0.9999779},"labels":[],"label_agreement":null},{"id":"W2025250895","doi":"10.1038/nprot.2012.071","title":"Sensitive detection of chromatin coassociations using enhanced chromosome conformation capture on chip","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Chromatin; Biology; DNA microarray; Computational biology; Chromatin immunoprecipitation; Chromosome conformation capture; ChIP-sequencing; Chromosome; Molecular biology; DNA; Genetics; Chromatin remodeling; Gene; Gene expression","score_opus":0.008594917364314331,"score_gpt":0.2815786809383578,"score_spread":0.27298376357404347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025250895","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9826076,0.000039950926,0.004576237,0.000017968756,0.00010742097,0.011461226,0.000069970396,0.00001334621,0.0011062701],"genre_scores_gemma":[0.99592876,0.0000027445906,0.0010793403,0.00012465815,0.000222405,0.002455435,0.00012673726,0.000017645387,0.000042268897],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923515,0.000054516688,0.00022376959,0.00013462937,0.00015195494,0.00019997115],"domain_scores_gemma":[0.9992826,0.000012692097,0.0002951745,0.00019954785,0.00015898318,0.000051011946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018795962,0.00013592317,0.00014555662,0.000043495515,0.00008910287,0.0000109874245,0.000079191435,0.00044895336,0.0000039078436],"category_scores_gemma":[0.00010013471,0.00013000183,0.000073749696,0.00009389035,0.000027885922,0.000010679621,0.000035684796,0.00022500903,0.000004432246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004367239,0.00006726058,0.00014932973,0.000046856338,0.00003303759,8.5028e-8,0.00022149217,0.00019632107,0.9986158,0.00014096452,0.000030948457,0.00045423812],"study_design_scores_gemma":[0.00048484042,0.00015670802,0.0034759294,0.000053768064,0.000013439672,0.000007334854,0.00009344634,0.0010549859,0.99366194,0.00003603787,0.0008155883,0.00014601013],"about_ca_topic_score_codex":0.000007162604,"about_ca_topic_score_gemma":0.000014964767,"teacher_disagreement_score":0.013321156,"about_ca_system_score_codex":0.00006508372,"about_ca_system_score_gemma":0.00005270376,"threshold_uncertainty_score":0.53013206},"labels":[],"label_agreement":null},{"id":"W2025701648","doi":"10.1038/nprot.2011.319","title":"Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst","year":2011,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1386,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Metabolomics; Computer science; Database normalization; Univariate; Normalization (sociology); Upload; Biological data; Protocol (science); Data set; Statistical inference; Inference; Data mining; Computational biology; Bioinformatics; Multivariate statistics; Artificial intelligence; Biology; Machine learning; World Wide Web; Pattern recognition (psychology); Statistics; Medicine","score_opus":0.11173108797610885,"score_gpt":0.33669275248066216,"score_spread":0.2249616645045533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025701648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97969913,0.0031373661,0.006177965,0.00002325139,0.00009827205,0.008764973,0.0017631487,0.000019450992,0.00031642587],"genre_scores_gemma":[0.985515,0.00013882322,0.011354581,0.000110294015,0.000110210116,0.0023640199,0.00038150433,0.0000141362625,0.000011406403],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872094,0.00010882579,0.00028911702,0.00056015624,0.00012248303,0.0001984533],"domain_scores_gemma":[0.9987996,0.00003105847,0.00020143868,0.00078800484,0.000113763774,0.00006608401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002930454,0.00020276972,0.00037250394,0.000077720506,0.00007594925,0.000016930526,0.00042285616,0.00033149333,0.000072518626],"category_scores_gemma":[0.00026315352,0.00015215302,0.00007558019,0.00013837339,0.000110956,0.000008717282,0.0004440266,0.00024059479,0.0000012368687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022154932,0.00014351743,0.101248674,0.000029353121,0.0002972931,0.0000018390373,0.000013349672,0.0000018476389,0.8962971,0.00038408002,0.00013356034,0.0012278487],"study_design_scores_gemma":[0.003008197,0.00065753533,0.13848619,0.000081913866,0.0004074773,0.0000052180735,0.00014581915,0.0010836123,0.81203586,0.00088980474,0.042486276,0.00071207696],"about_ca_topic_score_codex":0.0000897587,"about_ca_topic_score_gemma":0.00007213769,"teacher_disagreement_score":0.08426121,"about_ca_system_score_codex":0.0000050282283,"about_ca_system_score_gemma":0.00009438246,"threshold_uncertainty_score":0.620462},"labels":[],"label_agreement":null},{"id":"W2029789663","doi":"10.1038/nprot.2009.69","title":"Multichannel wholemount fluorescent and fluorescent/chromogenic in situ hybridization in Xenopus embryos","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Alberta Heritage Foundation for Medical Research","keywords":"Chromogenic; In situ hybridization; Chromogenic in situ hybridization; Biology; Xenopus; Gene expression; Fluorescence in situ hybridization; In situ; Computational biology; Immunofluorescence; Gene; Molecular biology; Genetics; Chromosome; Chemistry","score_opus":0.009016398500443307,"score_gpt":0.32090854979610284,"score_spread":0.3118921512956595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029789663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9610182,0.0009795434,0.000029553345,0.0002764348,0.00003429233,0.037397265,0.000010410731,0.00001611021,0.00023818553],"genre_scores_gemma":[0.99120206,0.000032869706,0.00034395923,0.00024129111,0.00011629106,0.007871641,0.00006247666,0.000020915559,0.00010848741],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840295,0.00012666704,0.00026879812,0.0005125299,0.00026212807,0.00042690444],"domain_scores_gemma":[0.9994022,0.000013938786,0.00004280094,0.00032925876,0.00009803138,0.000113718066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030714023,0.00019827248,0.00019561443,0.0001753774,0.000048567057,0.00005610928,0.00018619014,0.0003963408,0.000006534263],"category_scores_gemma":[0.00024110332,0.00019347107,0.000049300455,0.0002898621,0.000047274305,0.000011442808,0.00011926956,0.0005396081,0.000009518528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003680513,0.00025670914,0.006317448,0.00008261517,0.00000718754,0.000055388075,0.00006679037,0.000020443964,0.97725636,0.000033891112,0.00024005835,0.015295082],"study_design_scores_gemma":[0.0031796216,0.00071945804,0.07869088,0.00020374867,0.0000041644284,0.000041758925,0.000023840403,0.0006102908,0.90990245,0.00014976572,0.0061287214,0.00034531456],"about_ca_topic_score_codex":0.000015957374,"about_ca_topic_score_gemma":0.0003819391,"teacher_disagreement_score":0.07237343,"about_ca_system_score_codex":0.00007763344,"about_ca_system_score_gemma":0.000103683284,"threshold_uncertainty_score":0.7889522},"labels":[],"label_agreement":null},{"id":"W2031295600","doi":"10.1038/nprot.2010.10","title":"In vivo single-cell excitability probing of neuronal ensembles in the intact and awake developing Xenopus brain","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neuroscience and Neural Engineering","field":"Neuroscience","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Neuroscience; Xenopus; Calcium imaging; Biology; Sensory system; Neuroplasticity; Population; Electrophysiology; Neuron; Biological neural network; Premovement neuronal activity; Chemistry; Medicine; Calcium","score_opus":0.029496249152977834,"score_gpt":0.3071976623063583,"score_spread":0.2777014131533805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031295600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.979334,0.0000036838533,0.000014136585,0.0012679104,0.00012993923,0.018850109,0.0000034167103,0.000024506333,0.00037229073],"genre_scores_gemma":[0.99180126,8.057161e-7,0.0002461378,0.0015757196,0.000034048517,0.006307884,9.391362e-8,0.000013241312,0.000020788553],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984632,0.00015123011,0.00030199342,0.00045532815,0.00031001217,0.0003182401],"domain_scores_gemma":[0.99888813,0.00070735504,0.00009163165,0.00025659238,0.000018459756,0.000037838923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005920458,0.00016506793,0.00018206821,0.00015742212,0.00006838467,0.000071524395,0.00044836337,0.00015107746,0.000006002345],"category_scores_gemma":[0.0013960201,0.000119808814,0.000030084944,0.00067014305,0.00014043182,0.00037071324,0.000105479834,0.0012462023,6.7029725e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019860268,0.00008316569,0.0013799078,0.00011127998,1.0626885e-7,0.000029085271,0.00034103822,0.000010691886,0.9962015,0.0014504372,0.000016028258,0.00035687652],"study_design_scores_gemma":[0.000403949,0.00010140885,0.006969734,0.00007693286,5.7894454e-7,0.000042291667,0.000017176484,0.00023439611,0.9876028,0.000764238,0.0036504122,0.00013612202],"about_ca_topic_score_codex":0.0000088517,"about_ca_topic_score_gemma":0.00005471089,"teacher_disagreement_score":0.012542224,"about_ca_system_score_codex":0.00002021949,"about_ca_system_score_gemma":0.00006244241,"threshold_uncertainty_score":0.5414198},"labels":[],"label_agreement":null},{"id":"W2031743844","doi":"10.1038/nprot.2010.71","title":"Microtiter susceptibility testing of microbes growing on peg lids: a miniaturized biofilm model for high-throughput screening","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":285,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Microtiter plate; Biofilm; PEG ratio; High-throughput screening; Sonication; Microbiology; Chemistry; Throughput; Antimicrobial; Chromatography; Biology; Bacteria; Biochemistry; Computer science","score_opus":0.020288039696289367,"score_gpt":0.3012764629289494,"score_spread":0.28098842323266005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031743844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97644466,0.000022858378,0.0009122482,0.00018061146,0.00017557728,0.022000233,0.00015204339,0.00003150459,0.00008028197],"genre_scores_gemma":[0.73271334,9.896153e-7,0.26237923,0.0004667215,0.00051302847,0.0036573035,0.00011666624,0.000045397213,0.000107284075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842167,0.000044242654,0.00039201067,0.00061923964,0.00013612553,0.00038672352],"domain_scores_gemma":[0.99875826,0.00006818283,0.00023856101,0.00053899095,0.0003188127,0.00007721646],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034544244,0.00028636836,0.00032936977,0.00005960414,0.00015912698,0.000046430487,0.0002564152,0.00085492356,0.000005141848],"category_scores_gemma":[0.0005985722,0.00025031448,0.0001853582,0.00011479258,0.00012440512,0.000015247711,0.00013149298,0.0005536674,0.0000011865885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007204174,0.000105964056,0.0006336957,0.0001268182,0.00003300376,0.0000010389663,0.000038353264,0.000021323696,0.9952952,0.000094555624,0.0006359178,0.0022936855],"study_design_scores_gemma":[0.0015498983,0.00046342748,0.0007438675,0.00015842485,0.000015161903,0.0000133918475,0.000007854105,0.00063391554,0.99047077,0.000058120604,0.005586348,0.00029881805],"about_ca_topic_score_codex":0.000019989217,"about_ca_topic_score_gemma":0.00003388563,"teacher_disagreement_score":0.26146698,"about_ca_system_score_codex":0.000009030173,"about_ca_system_score_gemma":0.000107769774,"threshold_uncertainty_score":0.99999493},"labels":[],"label_agreement":null},{"id":"W2034401114","doi":"10.1038/nprot.2012.110","title":"Synthesis of [18F]SiFB: a prosthetic group for direct protein radiolabeling for application in positron emission tomography","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Positron emission tomography; Pet imaging; Chemistry; Computational biology; Nuclear medicine; Medicine; Biology","score_opus":0.010813310070958673,"score_gpt":0.3222991756421649,"score_spread":0.3114858655712063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034401114","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2707006,0.00059271033,0.014901178,0.0018707435,0.000020796577,0.7104115,0.0001720176,0.00022865107,0.0011018047],"genre_scores_gemma":[0.6345941,3.909387e-7,0.007780685,0.00007914374,0.00009362384,0.35733113,0.000041960295,0.000019591536,0.000059379614],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885,0.000048950937,0.00036056986,0.00025071856,0.00020830065,0.0002814557],"domain_scores_gemma":[0.99914914,0.00012021565,0.00019608278,0.00024293398,0.00018332568,0.00010831279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068169046,0.0001535313,0.00038272096,0.0002837052,0.000057075515,0.000010237721,0.000075916316,0.00025798893,0.0000063608854],"category_scores_gemma":[0.00042558313,0.000121940466,0.00022929245,0.0005000482,0.00002737721,0.00009970018,0.000012669718,0.00022443068,9.2271847e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014467124,0.0009347593,0.0127235,0.0022186441,0.000052763047,4.3571993e-7,0.000120571036,0.0000011843226,0.9667372,0.00057613186,0.00027435424,0.0149137275],"study_design_scores_gemma":[0.0026464635,0.0004169817,0.002498629,0.0052290685,0.00010409325,0.000006311493,0.00003901444,0.0007934361,0.9783855,0.00034114756,0.009336024,0.00020332963],"about_ca_topic_score_codex":0.000006609101,"about_ca_topic_score_gemma":0.0000032963578,"teacher_disagreement_score":0.36389348,"about_ca_system_score_codex":0.00006478341,"about_ca_system_score_gemma":0.000035662342,"threshold_uncertainty_score":0.4972588},"labels":[],"label_agreement":null},{"id":"W2036184150","doi":"10.1038/nprot.2006.402","title":"A peroxidase-coupled continuous absorbance plate-reader assay for flavin monoamine oxidases, copper-containing amine oxidases and related enzymes","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Amine oxidase; Chemistry; Amine gas treating; Vanillic acid; Peroxidase; Monoamine oxidase; Substrate (aquarium); Hydrogen peroxide; Absorbance; Biochemistry; Redox; Combinatorial chemistry; Chromatography; Enzyme; Organic chemistry; Biology","score_opus":0.0068645767159884324,"score_gpt":0.25597177227858675,"score_spread":0.2491071955625983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036184150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9402345,0.0074768737,0.001825413,0.0003816477,0.00031133872,0.04872078,0.00035489627,0.00014694664,0.00054764136],"genre_scores_gemma":[0.96104544,0.00002581881,0.0022535631,0.00045259856,0.000726934,0.03022376,0.0008740288,0.00008351694,0.0043143323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981425,0.00008356836,0.00045750334,0.0006856986,0.0001571959,0.00047357436],"domain_scores_gemma":[0.9989988,0.00007253297,0.00023191475,0.00037904806,0.00022025933,0.00009743512],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00041804637,0.0003809462,0.00042885836,0.000084923806,0.00018076155,0.000076113174,0.00018162237,0.00083054835,0.000031090025],"category_scores_gemma":[0.0003850177,0.00034351923,0.00013835366,0.00014284214,0.00010184886,0.000021376465,0.00007402508,0.00036624892,0.0000062275144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001088922,0.00015302247,0.0011639011,0.000099018136,0.000060675677,0.00000788357,0.000025048337,0.000025865267,0.9691498,0.0005090804,0.026550429,0.0011663174],"study_design_scores_gemma":[0.0052769994,0.00083503156,0.007314777,0.00017982959,0.00006783562,0.00006397769,0.00004232806,0.00023485393,0.7706376,0.00023903493,0.2145136,0.0005941907],"about_ca_topic_score_codex":0.00009198139,"about_ca_topic_score_gemma":0.00008998232,"teacher_disagreement_score":0.1985123,"about_ca_system_score_codex":0.000022283935,"about_ca_system_score_gemma":0.00006322751,"threshold_uncertainty_score":0.99990165},"labels":[],"label_agreement":null},{"id":"W2038172553","doi":"10.1038/nprot.2008.40","title":"Cardiac tissue engineering using perfusion bioreactor systems","year":2008,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Tissue Engineering and Regenerative Medicine","field":"Medicine","cited_by":272,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Biomedical Imaging and Bioengineering; National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"Tissue engineering; Bioreactor; Biomedical engineering; Cell culture; Perfusion; Scaffold; Materials science; Biochemical engineering; Chemistry; Cell biology; Biology; Medicine; Cardiology; Engineering","score_opus":0.027303362495022188,"score_gpt":0.32341973921528133,"score_spread":0.29611637672025914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038172553","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80564207,0.027279522,0.010292116,0.0005167469,0.0034359233,0.15108006,0.00003695042,0.0010783589,0.0006382483],"genre_scores_gemma":[0.95759785,0.00003368318,0.010614014,0.00003876691,0.004335391,0.020860882,0.00004028778,0.00012175855,0.006357391],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988018,0.000025679878,0.00022880362,0.00026968695,0.00039037748,0.00028365062],"domain_scores_gemma":[0.9992763,0.000030207755,0.00005254571,0.00030870305,0.00013585815,0.00019641162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015273338,0.00023239084,0.0004634418,0.00016418053,0.000094768235,0.00001210551,0.00007422108,0.00037146444,0.000022448192],"category_scores_gemma":[0.00014151903,0.00016986622,0.000077304736,0.0002804765,0.00003930541,0.000053595868,0.000026592952,0.00076575746,0.000018139357],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004408045,0.00006460013,0.003239592,0.0004840534,0.00005090572,0.00023616079,0.00023123535,0.0008677376,0.9923867,0.00028230602,0.001601591,0.00051104586],"study_design_scores_gemma":[0.0018049577,0.0005599447,0.008069946,0.001982926,0.00007681087,0.0010634538,0.000036066987,0.0081746075,0.26253942,5.7588335e-7,0.71526814,0.00042317025],"about_ca_topic_score_codex":0.000026010779,"about_ca_topic_score_gemma":9.6357795e-8,"teacher_disagreement_score":0.72984725,"about_ca_system_score_codex":0.00011965674,"about_ca_system_score_gemma":0.00008773934,"threshold_uncertainty_score":0.6926943},"labels":[],"label_agreement":null},{"id":"W2038591876","doi":"10.1038/nprot.2007.13","title":"High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2955,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Transformation (genetics); Transformation efficiency; Yeast; Saccharomyces cerevisiae; PEG ratio; Yield (engineering); DNA; Lithium (medication); Computational biology; Chemistry; Combinatorial chemistry; Biology; Biochemistry; Materials science; Gene; Agrobacterium","score_opus":0.010319084552111574,"score_gpt":0.3798412857771429,"score_spread":0.3695222012250313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038591876","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.081882134,0.0002919158,0.89051205,0.0001391409,0.0003327321,0.025737282,0.000026674828,0.00003194026,0.0010461408],"genre_scores_gemma":[0.98034453,0.0000031164686,0.014297953,0.00026788542,0.00055776583,0.00425625,0.0000291227,0.000029974242,0.00021340027],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912816,0.0000352109,0.0001956311,0.00020584781,0.0001772463,0.00025792368],"domain_scores_gemma":[0.99952376,0.000011219911,0.000047973022,0.00027999879,0.0000795903,0.00005744441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059353985,0.00014020778,0.00010243111,0.00003693205,0.00010904831,0.00003139278,0.0002011786,0.00032442887,0.000010796326],"category_scores_gemma":[0.000046186855,0.000101741316,0.00007965923,0.00015108155,0.00002670846,0.0000044647195,0.000032721182,0.0002897821,0.0000017092566],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007050154,0.000028503971,0.0000720126,0.000046674173,0.000021237447,0.0000022599975,0.00021941056,0.0022740385,0.98859733,0.00048465238,0.0002542085,0.007929156],"study_design_scores_gemma":[0.00040126342,0.00008671406,0.0006528438,0.000024616387,0.000013153244,0.000023257155,0.000082719685,0.0007210002,0.8993797,0.000047874557,0.09841193,0.0001549839],"about_ca_topic_score_codex":0.0000094073785,"about_ca_topic_score_gemma":0.000018973427,"teacher_disagreement_score":0.8984624,"about_ca_system_score_codex":0.00001717807,"about_ca_system_score_gemma":0.00004177776,"threshold_uncertainty_score":0.41488904},"labels":[],"label_agreement":null},{"id":"W2038649573","doi":"10.1038/nprot.2009.34","title":"Optimization of immunoprecipitation–western blot analysis in detecting GW182-associated components of GW/P bodies","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Immunoprecipitation; Biology; RNA; Polyclonal antibodies; Messenger RNA; Western blot; Molecular biology; RNA-binding protein; Gel electrophoresis; Cell biology; Biochemistry; Genetics; Antibody; Gene","score_opus":0.014150946218371716,"score_gpt":0.3356092070174567,"score_spread":0.321458260799085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038649573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99067223,0.0001128102,0.0012460187,0.00003765652,0.0000065802383,0.0077876206,0.000009281376,0.000005392767,0.00012237958],"genre_scores_gemma":[0.9968451,0.0000075622597,0.0014555316,0.000028249337,0.00001277475,0.0014511979,0.00009717006,0.0000059607105,0.00009644969],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910367,0.00009606514,0.0002916749,0.000165525,0.0001910448,0.0001520418],"domain_scores_gemma":[0.9993527,0.00002037025,0.0002004362,0.00017685191,0.00022399091,0.000025633759],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032265403,0.00008534032,0.00021599937,0.0001759243,0.00002923271,0.00001158312,0.00014912532,0.00021955026,0.0000038158787],"category_scores_gemma":[0.00033707664,0.000080339596,0.000088663175,0.00035239413,0.000023507717,0.000006343834,0.000033685275,0.00017165462,1.914192e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023447786,0.0001478429,0.08179464,0.000028917222,0.0001505025,7.519238e-7,0.00007464018,0.017307952,0.8991615,0.0000046740593,0.000007744529,0.001086359],"study_design_scores_gemma":[0.0015741978,0.0007116998,0.3736772,0.00017020888,0.000044926095,6.539724e-7,0.00004621333,0.008266109,0.61525,0.000047485308,0.00005123255,0.00016006212],"about_ca_topic_score_codex":0.000043479064,"about_ca_topic_score_gemma":0.00011778661,"teacher_disagreement_score":0.29188257,"about_ca_system_score_codex":0.00001816504,"about_ca_system_score_gemma":0.000026948539,"threshold_uncertainty_score":0.32761535},"labels":[],"label_agreement":null},{"id":"W2039231543","doi":"10.1038/nprot.2006.273","title":"Tissue subcellular fractionation and protein extraction for use in mass-spectrometry-based proteomics","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":346,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research; National Science Council","keywords":"Fractionation; Proteome; Differential centrifugation; Proteomics; Cell fractionation; Golgi apparatus; Mass spectrometry; Chemistry; Chromatography; Sample preparation; Endoplasmic reticulum; Centrifugation; Protein subcellular localization prediction; Tandem mass spectrometry; Extraction (chemistry); Protein purification; Cytosol; Biochemistry; Membrane; Enzyme","score_opus":0.013123542833288298,"score_gpt":0.32579790949899473,"score_spread":0.3126743666657064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039231543","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04185538,0.0000337331,0.8626705,0.00037524384,0.000008317478,0.09421336,0.000080125654,0.00022468451,0.0005386959],"genre_scores_gemma":[0.10760717,6.955409e-7,0.5661593,0.000024492932,0.000110536916,0.32544652,0.0001245348,0.000031539264,0.0004951972],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988929,0.000012767514,0.00029981975,0.00040486426,0.00016925384,0.00022041517],"domain_scores_gemma":[0.9992658,0.000077324476,0.00022151388,0.00027177695,0.0001268975,0.00003669807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016962283,0.00018084711,0.00016251447,0.0001335881,0.00011385636,0.000095831696,0.000110419845,0.0005292034,0.000036929712],"category_scores_gemma":[0.00008876444,0.00019145396,0.000041668398,0.00022075845,0.000031645715,0.00028945922,0.000013478373,0.00063592853,0.0000017029731],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001565142,0.0001330198,0.0013475167,0.00018305567,0.0000024429028,0.0000015853873,0.0000019329912,0.00008477247,0.9881278,0.009051038,0.000078796984,0.00083147903],"study_design_scores_gemma":[0.0008814901,0.000040312843,0.00026191727,0.00009952747,0.0000042852225,0.0000031036802,0.0000027644908,0.0017588317,0.9270076,0.028749878,0.040983815,0.00020645886],"about_ca_topic_score_codex":0.000047214064,"about_ca_topic_score_gemma":0.00003430393,"teacher_disagreement_score":0.29651117,"about_ca_system_score_codex":0.00020471762,"about_ca_system_score_gemma":0.00005044585,"threshold_uncertainty_score":0.7807266},"labels":[],"label_agreement":null},{"id":"W2039763889","doi":"10.1038/nprot.2010.102","title":"Chromosome orientation fluorescence in situ hybridization to study sister chromatid segregation in vivo","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Sister chromatids; Chromatid; Biology; Sister chromatid exchange; Genetics; Molecular biology; Fluorescence in situ hybridization; Cell division; Cell biology; Chromosome; DNA; Cell; Gene","score_opus":0.005315148000593736,"score_gpt":0.2863727358190029,"score_spread":0.28105758781840917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039763889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96918315,0.000003639423,0.00015362937,0.00007216481,0.00007555906,0.030240292,0.000008555636,0.000010057286,0.00025293525],"genre_scores_gemma":[0.9756031,7.458455e-7,0.0031665077,0.0001351366,0.0000915244,0.020856032,0.000065893626,0.000020496973,0.000060531802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989165,0.000056208155,0.00028774637,0.00038631324,0.00016790257,0.00018530931],"domain_scores_gemma":[0.99942267,0.0000073974193,0.00009403916,0.00033378767,0.00008993771,0.00005216502],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028001663,0.00014691037,0.00013065046,0.00010651209,0.000039051436,0.000050016257,0.0002029266,0.00025954892,0.000016481352],"category_scores_gemma":[0.00013260689,0.00014833329,0.000028010198,0.00027506863,0.000015359337,0.0000114912,0.00008285461,0.00030729623,0.000006530016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000600825,0.00026411813,0.034120355,0.000025242387,0.0000048128422,0.000004346444,0.00027709847,0.00017562477,0.9639264,0.00008950321,0.00007258507,0.0009798273],"study_design_scores_gemma":[0.0021682621,0.00059903547,0.17552482,0.00006507436,0.000005228549,0.00000947907,0.00013063618,0.0008996757,0.81814396,0.000285641,0.0018191782,0.00034903042],"about_ca_topic_score_codex":0.000013903078,"about_ca_topic_score_gemma":0.001627041,"teacher_disagreement_score":0.14578246,"about_ca_system_score_codex":0.000038683313,"about_ca_system_score_gemma":0.00006147256,"threshold_uncertainty_score":0.6048856},"labels":[],"label_agreement":null},{"id":"W2040111212","doi":"10.1038/nprot.2015.021","title":"Efficient generation of functional CFTR-expressing airway epithelial cells from human pluripotent stem cells","year":2015,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neonatal Respiratory Health Research","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Induced pluripotent stem cell; Cystic fibrosis; Cell biology; Progenitor cell; Stem cell; Regeneration (biology); Biology; Cellular differentiation; Cystic fibrosis transmembrane conductance regulator; Directed differentiation; Transmembrane protein; Immunology; Embryonic stem cell; Genetics","score_opus":0.1160358285085847,"score_gpt":0.39220484705025366,"score_spread":0.276169018541669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040111212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8292304,0.0014812092,0.0030920014,0.00068060774,0.0009914379,0.16255067,0.00031363862,0.00016634246,0.0014936376],"genre_scores_gemma":[0.9425446,0.0000026448745,0.0034944764,0.000998382,0.0030097128,0.047705427,0.00009896202,0.00010339719,0.0020424193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965344,0.00022530585,0.00060227385,0.00050969166,0.0017229571,0.00040534974],"domain_scores_gemma":[0.99785036,0.00009775424,0.00025828148,0.0005348022,0.000766117,0.0004926654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009508835,0.00022826677,0.0004087425,0.0001913564,0.00014138775,0.000039713144,0.00018595194,0.00048478146,0.00016789291],"category_scores_gemma":[0.00009484844,0.00018645464,0.000120154575,0.0002422186,0.00010680161,0.000060544357,0.00011350203,0.0011175286,0.00010449862],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096951,0.00036579013,0.00009974535,0.00037665953,0.000026974902,0.000031007923,0.00014479147,0.0013566632,0.9818259,0.000108690765,0.0033345064,0.0113597745],"study_design_scores_gemma":[0.0036933902,0.00072950235,0.0004011553,0.00030551833,0.000019379273,0.0000032262838,0.00003145317,0.0032028877,0.9040395,0.000047394355,0.08737744,0.00014917363],"about_ca_topic_score_codex":0.000053949454,"about_ca_topic_score_gemma":0.000010079974,"teacher_disagreement_score":0.114845246,"about_ca_system_score_codex":0.00037910708,"about_ca_system_score_gemma":0.00087548303,"threshold_uncertainty_score":0.7603399},"labels":[],"label_agreement":null},{"id":"W2040368665","doi":"10.1038/nprot.2007.459","title":"Detecting protein–protein interactions by far western blotting","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":336,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Kidney Foundation of Canada","keywords":"Blot; Immunoprecipitation; Membrane protein; Förster resonance energy transfer; Lysis; Biology; Protein–protein interaction; Cell biology; Biochemistry; Membrane; Molecular biology; Chemistry; Fluorescence; Gene","score_opus":0.007835246386365244,"score_gpt":0.3184240833271773,"score_spread":0.3105888369408121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040368665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.81610864,0.0030281288,0.011865308,0.0013715443,0.00041514402,0.14656475,0.000038641923,0.00030228673,0.020305546],"genre_scores_gemma":[0.973186,0.0000036684912,0.0020181339,0.00037660505,0.0004438866,0.01836973,0.000021092674,0.00004226709,0.00553861],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988178,0.000043647364,0.00026037224,0.0003704434,0.00015019401,0.00035753066],"domain_scores_gemma":[0.99940723,0.000011932521,0.00014435324,0.00024856543,0.00011346762,0.00007445549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037559666,0.00019693379,0.000141744,0.00004407355,0.00024523717,0.00004175711,0.00018419341,0.0005824715,0.000009520978],"category_scores_gemma":[0.00018929319,0.00016531783,0.00009145016,0.00012973808,0.00005578316,0.0000055377136,0.0001369552,0.0008833501,0.000015495842],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099268575,0.000063389154,0.00120986,0.000049317303,0.00006461872,0.0000041122435,0.000048157843,5.9133964e-7,0.98631406,0.000023519868,0.0006695831,0.011453544],"study_design_scores_gemma":[0.00036773906,0.0001514832,0.0002496755,0.00012670431,0.000005329819,0.000013816661,0.000042226555,0.00000205214,0.6965802,0.000021302254,0.30227512,0.0001643901],"about_ca_topic_score_codex":0.000009297185,"about_ca_topic_score_gemma":0.00006410876,"teacher_disagreement_score":0.30160552,"about_ca_system_score_codex":0.00002263563,"about_ca_system_score_gemma":0.000025613095,"threshold_uncertainty_score":0.6741466},"labels":[],"label_agreement":null},{"id":"W2040612204","doi":"10.1038/nprot.2013.163","title":"Identification and quantification of aminophospholipid molecular species on the surface of apoptotic and activated cells","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"British Heart Foundation; Wellcome Trust","keywords":"Phosphatidylserine; Flow cytometry; Annexin; Apoptosis; Chemistry; Cell biology; Membrane; Tandem mass spectrometry; Chromatography; Mass spectrometry; Biology; Biochemistry; Molecular biology; Phospholipid","score_opus":0.010253736321337184,"score_gpt":0.2673233350940863,"score_spread":0.2570695987727491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040612204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9859273,0.00004271178,0.000041852756,0.00017095995,0.00003451504,0.013679568,0.000012973386,0.0000037695363,0.00008636996],"genre_scores_gemma":[0.99749213,0.000012657612,0.00012403325,0.00005361994,0.000024641462,0.0020669792,0.000016455495,0.00000972948,0.00019976254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993505,0.000049083083,0.00018380175,0.00020689567,0.00012486632,0.000084845815],"domain_scores_gemma":[0.9993267,0.000020689558,0.00016932194,0.00030924287,0.00014837134,0.000025641259],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011710263,0.00010232859,0.00011700742,0.000019988407,0.000032626136,0.000022472808,0.00011405542,0.00019648073,0.0000141480195],"category_scores_gemma":[0.000054827135,0.00006839353,0.000030318313,0.000077504585,0.0001190265,0.000006007624,0.000035915342,0.00013114049,0.0000012549714],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041833737,0.000034222918,0.0004306153,0.00007751609,0.000013425559,6.317021e-8,0.000027445785,0.000006402712,0.9983056,0.00047263358,0.00015768362,0.0004325301],"study_design_scores_gemma":[0.00020281703,0.000121051395,0.019219184,0.000030508461,0.00001242391,0.0000012464126,0.00003616424,0.0000062086706,0.9794941,0.000054211025,0.00075080956,0.00007129242],"about_ca_topic_score_codex":0.000008278808,"about_ca_topic_score_gemma":8.561739e-7,"teacher_disagreement_score":0.018811544,"about_ca_system_score_codex":0.0000032259225,"about_ca_system_score_gemma":0.000016504848,"threshold_uncertainty_score":0.2789007},"labels":[],"label_agreement":null},{"id":"W2041686750","doi":"10.1038/nprot.2011.382","title":"Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates","year":2011,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":327,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Proteome; Isotopic labeling; Chemistry; Biochemistry; Protease; Peptide; Isobaric labeling; Stable isotope labeling by amino acids in cell culture; Amine gas treating; Amino acid; Label-free quantification; Lysine; Quantitative proteomics; Proteomics; Enzyme","score_opus":0.03292652992043294,"score_gpt":0.33340022787527973,"score_spread":0.3004736979548468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041686750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9610947,0.001276972,0.0006907642,0.00011845066,0.000015943522,0.036022224,0.00003144206,0.00010850884,0.00064103125],"genre_scores_gemma":[0.9314566,0.00002290078,0.021337016,0.00003413626,0.000031889875,0.04683723,0.00000748722,0.00001984224,0.0002528691],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906135,0.000017541279,0.00030766104,0.0002874551,0.00013579922,0.0001901858],"domain_scores_gemma":[0.9993096,0.00005980177,0.00025112904,0.0002751901,0.00006237843,0.000041916534],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019306321,0.0001727036,0.00023089824,0.000031877098,0.00014743976,0.000033438224,0.00024297003,0.00019758011,0.000019145384],"category_scores_gemma":[0.000049596303,0.00012147837,0.000042706804,0.000086480955,0.00018461571,0.00013995652,0.00012010925,0.00063675817,5.172024e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036190895,0.00011806388,0.028675735,0.0016167407,0.000052793945,0.000005823074,0.0008774122,1.0968632e-7,0.95037943,0.0072643775,0.000027529997,0.010620085],"study_design_scores_gemma":[0.0015947922,0.000032905053,0.0013213049,0.0005860607,0.000030999392,0.000056357618,0.00011258215,0.00019745124,0.97979116,0.015574895,0.00046320833,0.00023826187],"about_ca_topic_score_codex":0.000026369595,"about_ca_topic_score_gemma":0.000003924342,"teacher_disagreement_score":0.029638035,"about_ca_system_score_codex":0.000014957473,"about_ca_system_score_gemma":0.000016003665,"threshold_uncertainty_score":0.4953744},"labels":[],"label_agreement":null},{"id":"W2042894082","doi":"10.1038/nprot.2013.001","title":"Incorporation of a viral DNA-packaging motor channel in lipid bilayers for real-time, single-molecule sensing of chemicals and double-stranded DNA","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Nanopore and Nanochannel Transport Studies","field":"Engineering","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Biomedical Imaging and Bioengineering","keywords":"Nanopore; Nanopore sequencing; DNA; Lipid bilayer; Biosensor; Biophysics; Membrane; Rolling circle replication; Nanotechnology; Nanobiotechnology; Chemistry; Macromolecule; Bacteriophage; Analyte; Ion channel; Computational biology; Biology; DNA sequencing; Biochemistry; Materials science; Polymerase; Escherichia coli; Gene; Receptor","score_opus":0.012796409409612367,"score_gpt":0.24902510665362643,"score_spread":0.23622869724401407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042894082","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.929073,0.00010070685,0.0011058443,0.00011389959,0.00007348629,0.068713054,0.000053935586,0.00013786955,0.0006282268],"genre_scores_gemma":[0.98515224,0.00001032552,0.0029874744,0.000014267787,0.00007805272,0.011668042,0.000026736898,0.000039622737,0.000023228857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888784,0.000012092609,0.0004699092,0.00021770406,0.00015873765,0.00025371663],"domain_scores_gemma":[0.9994505,0.000058928068,0.00013630066,0.00015188013,0.0001514412,0.000050929117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018118661,0.00021078676,0.0004536555,0.00019201224,0.000031165397,0.000015333544,0.00008175125,0.00028724704,0.0000039421707],"category_scores_gemma":[0.00002337496,0.00019582217,0.000077926015,0.00024273315,0.000057004523,0.0001782957,0.000018185441,0.00019138456,5.83054e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002353323,0.000048147704,0.0002003409,0.0008914714,0.000038608716,0.0000012609655,0.00036776296,0.000112794354,0.99741364,0.00002438657,0.00012381213,0.0005424305],"study_design_scores_gemma":[0.0024829397,0.00018007803,0.00039639822,0.0005009934,0.000018063884,0.0000017518629,0.000041570984,0.0032627839,0.9922689,0.0005567378,0.00008645561,0.00020331894],"about_ca_topic_score_codex":0.000036696736,"about_ca_topic_score_gemma":0.0000210483,"teacher_disagreement_score":0.057045013,"about_ca_system_score_codex":0.00003586016,"about_ca_system_score_gemma":0.000019260347,"threshold_uncertainty_score":0.7985396},"labels":[],"label_agreement":null},{"id":"W2044822742","doi":"10.1038/nprot.2006.328","title":"Primary culture of ovarian surface epithelial cells and ascites-derived ovarian cancer cells from patients","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Ascites; Ovarian cancer; Epithelial ovarian cancer; Ascitic fluid; Cancer research; Cell culture; Biology; Pathology; Cancer; Medicine; Internal medicine","score_opus":0.004161575374466615,"score_gpt":0.2594053451538742,"score_spread":0.2552437697794076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044822742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9465538,0.00066661346,0.0045971787,0.00020293011,0.000114037386,0.043189056,0.0024481849,0.000061021405,0.0021671802],"genre_scores_gemma":[0.95120656,0.00007997216,0.030063743,0.0007502021,0.00033688516,0.015810162,0.0012461075,0.000050094757,0.00045626823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887556,0.00006960553,0.0002522959,0.0004668937,0.00013150719,0.00020412753],"domain_scores_gemma":[0.99920255,0.000008658503,0.00018959967,0.0003850202,0.00015639437,0.000057785914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008627938,0.00021177178,0.00022063394,0.000020176562,0.00007507387,0.000021857173,0.00023808153,0.0007295236,0.000022229939],"category_scores_gemma":[0.000008721092,0.00018011719,0.000084646395,0.00009093804,0.000105697916,0.0000043783994,0.0001353695,0.00027315225,0.0000017507554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099580095,0.00013972368,0.0028414973,0.000029258326,0.000032464515,7.277209e-7,0.00001482049,0.000011092656,0.99131066,0.00013584633,0.004613658,0.0007706541],"study_design_scores_gemma":[0.00085199455,0.00014767301,0.010504672,0.000029899957,0.000018548242,5.081571e-7,0.0000023538514,0.0000064791384,0.8998524,0.00045496834,0.08793816,0.0001923307],"about_ca_topic_score_codex":0.00025347582,"about_ca_topic_score_gemma":0.000040584382,"teacher_disagreement_score":0.09145826,"about_ca_system_score_codex":0.000015403795,"about_ca_system_score_gemma":0.000063444946,"threshold_uncertainty_score":0.7344966},"labels":[],"label_agreement":null},{"id":"W2045949302","doi":"10.1038/nprot.2009.97","title":"Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4605,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; Ontario Institute for Cancer Research; University of California, Santa Cruz","keywords":"Ensembl; Bioconductor; Computer science; Identifier; Computational biology; R package; Genomics; Data mining; Data integration; Genome; Data science; Biology; Gene; Genetics; Programming language","score_opus":0.025747011649413513,"score_gpt":0.3351561014281086,"score_spread":0.3094090897786951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045949302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4446024,0.0032574607,0.16086867,0.025494859,0.00061416393,0.3627046,0.001236545,0.000080138096,0.0011411294],"genre_scores_gemma":[0.9723658,0.00000789751,0.00070325873,0.0008651299,0.00017799414,0.02519609,0.00037294044,0.000010197531,0.00030070895],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946076,0.000034453376,0.000117973985,0.00019096295,0.00009835379,0.000097472104],"domain_scores_gemma":[0.9993019,0.000013736339,0.00013243756,0.00045025614,0.00008218323,0.0000194698],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021253654,0.000086795124,0.000066347995,0.000022965143,0.0001049334,0.000033794382,0.00028178337,0.00013188043,0.000005921614],"category_scores_gemma":[0.00003778017,0.00004183931,0.00004647685,0.00008582064,0.00005327906,0.0000048229545,0.000021078358,0.00011434438,0.0000010167363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014224097,0.00001699158,0.000028630575,0.0000116663,0.000016726639,6.049315e-8,0.000049053942,0.000002366124,0.957191,0.00018991024,0.03549945,0.0068519157],"study_design_scores_gemma":[0.00035469563,0.00013943746,0.0038908334,0.000023730248,0.00000705416,0.0000017078609,0.00017047428,0.000018097662,0.6786815,0.00007668651,0.31657737,0.00005838797],"about_ca_topic_score_codex":0.0000012712701,"about_ca_topic_score_gemma":0.0000080035525,"teacher_disagreement_score":0.52776337,"about_ca_system_score_codex":0.000008752427,"about_ca_system_score_gemma":0.000053973126,"threshold_uncertainty_score":0.17061575},"labels":[],"label_agreement":null},{"id":"W2047098628","doi":"10.1038/nprot.2008.55","title":"Production of neurons, astrocytes and oligodendrocytes from mammalian CNS stem cells","year":2008,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neurogenesis and neuroplasticity mechanisms","field":"Neuroscience","cited_by":156,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Neurosphere; Neural stem cell; Cell biology; Stem cell; Biology; Cell culture; Epidermal growth factor; Neuroscience; Adult stem cell; Endothelial stem cell; In vitro; Biochemistry; Genetics","score_opus":0.03528432032146049,"score_gpt":0.27172191121777095,"score_spread":0.23643759089631045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047098628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9789049,0.000038668713,0.000051403043,0.00008136205,0.00033554924,0.02035679,0.00004510483,0.00010109329,0.000085145606],"genre_scores_gemma":[0.9918578,0.000032086726,0.00044218195,0.00030612698,0.00015631533,0.006677436,8.8119276e-7,0.00004027309,0.00048687938],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980288,0.00020141747,0.00031130773,0.0007285469,0.00044726132,0.00028265052],"domain_scores_gemma":[0.9990355,0.00021148783,0.00021387832,0.0003707226,0.000053153333,0.000115308205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007553802,0.00024085131,0.00029262833,0.00010515832,0.00019457503,0.000033434386,0.0002816224,0.0001744502,0.000023765799],"category_scores_gemma":[0.0001550191,0.00021227979,0.000068401314,0.00025224927,0.00014308734,0.0001973894,0.000121905236,0.00046830167,0.000027425533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015311792,0.000114992836,0.00054697774,0.000052832547,0.0000025291083,0.00006027615,0.00007308813,0.000011918605,0.99788904,0.00041011587,0.0001590983,0.00052600063],"study_design_scores_gemma":[0.00041308044,0.00032713258,0.0014805559,0.000053544525,0.000010038736,0.00011647491,0.000008555224,0.000043167056,0.99351746,0.00003809766,0.0038264403,0.00016544008],"about_ca_topic_score_codex":0.000005325285,"about_ca_topic_score_gemma":0.000002201581,"teacher_disagreement_score":0.013679353,"about_ca_system_score_codex":0.000012260152,"about_ca_system_score_gemma":0.00004604686,"threshold_uncertainty_score":0.86565185},"labels":[],"label_agreement":null},{"id":"W2047772836","doi":"10.1038/nprot.2009.210","title":"Production of compartmented cultures of rat sympathetic neurons","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Nerve injury and regeneration","field":"Neuroscience","cited_by":59,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Axon; Neurotrophic factors; Axoplasmic transport; Cell bodies; Cell biology; Cell culture; Neurotrophin; Biology; Anatomy; Chemistry; Neuroscience; Central nervous system; Biochemistry; Receptor","score_opus":0.02795416103965529,"score_gpt":0.35398158522597567,"score_spread":0.32602742418632036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047772836","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89232856,0.00006964992,0.00007011897,0.003058995,0.0007290872,0.10172117,0.000014049517,0.00012413113,0.0018842398],"genre_scores_gemma":[0.9942787,0.0000016196251,0.00016574934,0.00026033723,0.0000841738,0.004711416,0.0000029251632,0.000005043069,0.0004899922],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906033,0.0001299903,0.0002295508,0.00022945029,0.00024438897,0.000106276406],"domain_scores_gemma":[0.9994577,0.00001938107,0.00018338721,0.0002287046,0.000084173495,0.000026607173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009911712,0.00009495809,0.00015188193,0.000057632296,0.00006286144,0.000010969121,0.00014866135,0.0001136466,0.0000089238265],"category_scores_gemma":[0.00020435962,0.00006787087,0.000060030055,0.00026750748,0.000072232426,0.0001151799,0.000012027612,0.00023697883,0.0000026362616],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007983322,0.00027726928,0.00007687233,0.000039079092,0.0000011531582,0.0000011390217,0.000077671335,0.000111809575,0.9899922,0.0062169526,0.0022275974,0.0008984389],"study_design_scores_gemma":[0.00025367623,0.0004351699,0.0006769589,0.00007172126,0.0000056316785,0.0000091067495,0.0000033585432,0.00003912972,0.9895085,0.0009615293,0.007972324,0.000062879844],"about_ca_topic_score_codex":3.9271887e-7,"about_ca_topic_score_gemma":7.1980327e-7,"teacher_disagreement_score":0.101950176,"about_ca_system_score_codex":0.000009799953,"about_ca_system_score_gemma":0.000022785598,"threshold_uncertainty_score":0.27676937},"labels":[],"label_agreement":null},{"id":"W2048439051","doi":"10.1038/nprot.2011.329","title":"In vivo solid-phase microextraction for monitoring intravenous concentrations of drugs and metabolites","year":2011,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Analytical chemistry methods development","field":"Chemistry","cited_by":79,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Solid-phase microextraction; Chromatography; Sorbent; Extraction (chemistry); Analyte; Aptamer; In vivo; Sample preparation; Biomedical engineering; Solid phase extraction; Materials science; Mass spectrometry; Chemistry; Gas chromatography–mass spectrometry; Medicine; Adsorption","score_opus":0.03771066680056388,"score_gpt":0.40280358873695526,"score_spread":0.36509292193639137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048439051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6790146,0.0022621034,0.090480804,0.00066476176,0.0005898558,0.18354733,0.0007156972,0.00043975256,0.042285077],"genre_scores_gemma":[0.75345594,0.0000122091,0.19406708,0.000033451135,0.00023168576,0.051594805,0.00000764085,0.000030109308,0.0005670667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908906,0.000014594024,0.0003398608,0.00023112597,0.00012347761,0.00020186108],"domain_scores_gemma":[0.99936545,0.00014354892,0.00014267731,0.000153446,0.00012292815,0.000071942864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022884145,0.00013262546,0.00023878734,0.00003463069,0.0000373386,0.000014675415,0.00011274985,0.00028809084,0.00018543535],"category_scores_gemma":[0.00026346085,0.00012830526,0.000046071873,0.00009140604,0.00005810722,0.0001078793,0.000025955958,0.00034807622,4.3598243e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021189595,0.0002704271,0.0015844237,0.00048148897,0.000035488716,0.000002672091,0.00073973,2.2510426e-7,0.9938017,0.00078971905,0.000026963688,0.002055227],"study_design_scores_gemma":[0.0012497504,0.000024002258,0.00011477174,0.00013491859,0.000022838181,0.000004638459,0.00018104292,0.000047949452,0.9906801,0.0021276933,0.0052879257,0.00012437878],"about_ca_topic_score_codex":0.000008498833,"about_ca_topic_score_gemma":8.792721e-7,"teacher_disagreement_score":0.13195252,"about_ca_system_score_codex":0.00006084967,"about_ca_system_score_gemma":0.00007306716,"threshold_uncertainty_score":0.5232136},"labels":[],"label_agreement":null},{"id":"W2049989995","doi":"10.1038/nprot.2014.090","title":"Bayesian deconvolution and quantification of metabolites in complex 1D NMR spectra using BATMAN","year":2014,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":196,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Biotechnology and Biological Sciences Research Council; Natural Environment Research Council; Sight Research UK","keywords":"Deconvolution; NMR spectra database; Biological system; Metabolomics; Computer science; Spectral line; Metabolite; Bayesian probability; Estimator; Chemistry; Algorithm; Artificial intelligence; Mathematics; Physics; Statistics; Chromatography; Biology","score_opus":0.022719699385307615,"score_gpt":0.326788800233332,"score_spread":0.3040691008480244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049989995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9399534,0.0022017932,0.031106878,0.00027950047,0.00007025172,0.024573378,0.000030965068,0.000017093489,0.0017667414],"genre_scores_gemma":[0.98657674,0.000040900264,0.011399113,0.00006275194,0.00009935922,0.001754334,0.000033179444,0.000011142612,0.000022479226],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991792,0.00007740404,0.00022741577,0.00027271255,0.000088311666,0.00015496161],"domain_scores_gemma":[0.9995303,0.000013438193,0.00013099563,0.00022212861,0.00007076111,0.000032347085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035392263,0.00011700323,0.00022199356,0.00009125204,0.000044942753,0.000015654374,0.00009552214,0.00018541297,0.00000845693],"category_scores_gemma":[0.00015959096,0.00010644885,0.000042043175,0.00013734095,0.0000637963,0.00000492381,0.000053134005,0.00013246735,4.121165e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054659406,0.000051043397,0.016632779,0.00006104886,0.000022877752,1.2617446e-7,0.000016094977,0.000016820823,0.9720836,0.009905469,0.00007150993,0.0010839154],"study_design_scores_gemma":[0.0012105617,0.0002601252,0.14691722,0.00004209933,0.000027450202,0.000007144896,0.00003907929,0.0036980854,0.79502976,0.0032918681,0.049205236,0.0002713899],"about_ca_topic_score_codex":0.00002022421,"about_ca_topic_score_gemma":0.00006746533,"teacher_disagreement_score":0.17705393,"about_ca_system_score_codex":0.000009382827,"about_ca_system_score_gemma":0.000019984998,"threshold_uncertainty_score":0.43408582},"labels":[],"label_agreement":null},{"id":"W2050938473","doi":"10.1038/nprot.2006.224","title":"BrdU assay for neurogenesis in rodents","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neurogenesis and neuroplasticity mechanisms","field":"Neuroscience","cited_by":345,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Neurogenesis; Bromodeoxyuridine; Proliferation Marker; Cell biology; Biology; Cell division; Cell growth; Endogeny; Deoxyuridine; Molecular biology; Cell; Neuroscience; Immunology; DNA; Genetics; Biochemistry","score_opus":0.0296971783391801,"score_gpt":0.3266320571587147,"score_spread":0.29693487881953456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050938473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.75058967,0.00003753842,0.0032291776,0.0008387395,0.0009687635,0.24049008,0.00017923517,0.00051319017,0.00315359],"genre_scores_gemma":[0.88878125,0.0000014590412,0.00044664,0.0021630346,0.00021667524,0.10777975,0.0000029109724,0.00007172587,0.0005365774],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977526,0.00022305083,0.00035102668,0.00075211533,0.00043247218,0.00048872014],"domain_scores_gemma":[0.99891824,0.00049878744,0.00012853941,0.00033503186,0.000048423193,0.00007097999],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026267304,0.0002449767,0.00025444207,0.00017758018,0.00012857716,0.00010482657,0.00045504677,0.00024966613,0.00002270131],"category_scores_gemma":[0.0007397203,0.00022466533,0.00012586378,0.00047458144,0.00003589098,0.00014723423,0.00008339962,0.00038844836,0.00003743832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015404163,0.0002880499,0.0011836148,0.0000520198,7.5745544e-7,0.00006950979,0.0000039900037,0.00008180857,0.9853403,0.011271517,0.000896361,0.0006580401],"study_design_scores_gemma":[0.0011081233,0.00016335238,0.0023819436,0.000031710428,0.0000046000323,0.00002801374,6.0918666e-7,0.0005186774,0.96266454,0.0014450229,0.03144833,0.00020506505],"about_ca_topic_score_codex":0.0000070708847,"about_ca_topic_score_gemma":0.000024279474,"teacher_disagreement_score":0.13819155,"about_ca_system_score_codex":0.000031883985,"about_ca_system_score_gemma":0.00004397482,"threshold_uncertainty_score":0.9161586},"labels":[],"label_agreement":null},{"id":"W2051392340","doi":"10.1038/nprot.2010.70","title":"Immobilization of growth factors on solid supports for the modulation of stem cell fate","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Deutsche Forschungsgemeinschaft","keywords":"Stem cell; Extracellular matrix; Leukemia inhibitory factor; Biophysics; Ethylene glycol; Chemistry; Adhesion; Cell adhesion; Growth factor; Biomolecule; Matrix (chemical analysis); Materials science; Cell growth; In vivo; Cell; Biochemistry; Cell biology; Biology; Chromatography; Organic chemistry; Embryonic stem cell","score_opus":0.017191849343780624,"score_gpt":0.32755497840432374,"score_spread":0.3103631290605431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051392340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.869084,0.000014283019,0.013853427,0.00009261819,0.00039763065,0.115236044,0.000053397605,0.00013369406,0.0011349225],"genre_scores_gemma":[0.98294866,9.876147e-7,0.00046174746,0.0000050303333,0.000049888415,0.016457083,0.000010276441,0.000021978643,0.000044322314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914914,0.000016909855,0.00022870587,0.00011093637,0.00034124416,0.00015303545],"domain_scores_gemma":[0.9991086,0.00035063602,0.0000754683,0.00024170961,0.00018551743,0.000038033504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041639415,0.00008897504,0.00012526005,0.00007722144,0.000029347344,0.00001142437,0.00021764533,0.00027898667,0.000029058026],"category_scores_gemma":[0.00015729161,0.00005841582,0.000056025907,0.00017340659,0.00004703562,0.000045563742,0.000025142575,0.000494375,0.0000013175963],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009175625,0.00012467505,0.009342119,0.001971735,0.00003905324,3.3389307e-7,0.00036113482,0.0056106895,0.96471137,0.0024115904,0.00089326495,0.014442306],"study_design_scores_gemma":[0.00028641245,0.000108676184,0.017826803,0.000060872902,0.0000040146915,1.6712791e-7,0.00001131912,0.03694531,0.94238657,0.00049472624,0.0018078976,0.00006724511],"about_ca_topic_score_codex":0.0000031368302,"about_ca_topic_score_gemma":0.0000027713438,"teacher_disagreement_score":0.1138647,"about_ca_system_score_codex":0.000016303291,"about_ca_system_score_gemma":0.000025292517,"threshold_uncertainty_score":0.2382128},"labels":[],"label_agreement":null},{"id":"W2053933168","doi":"10.1038/nprot.2006.445","title":"Mutation screening using fluorescence multiplex denaturing gradient gel electrophoresis (FMD): detecting mutations in the BRCA1 gene","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Coalition for Research in Women's Health; University of Toronto","funders":"","keywords":"Temperature gradient gel electrophoresis; Amplicon; Multiplex; Molecular biology; Multiplex polymerase chain reaction; Biology; Gel electrophoresis; Gene; Mutation; DNA; Genetics; DNA sequencing; Polymerase chain reaction","score_opus":0.015692964011167283,"score_gpt":0.31109529008973175,"score_spread":0.2954023260785645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053933168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9509043,0.0007412574,0.022389902,0.00018333353,0.00008483179,0.025478793,0.000013848339,0.000035526267,0.0001682107],"genre_scores_gemma":[0.9404713,0.000002994125,0.039581712,0.00016443942,0.00040066673,0.019249152,0.000074301366,0.00003676907,0.000018650915],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982987,0.0001682129,0.0003429239,0.00048276482,0.0003127029,0.00039467364],"domain_scores_gemma":[0.99918646,0.000054352724,0.00018028117,0.00038082316,0.00016617935,0.00003192235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043147057,0.00021337897,0.00013283217,0.00014425053,0.0003156536,0.00010490928,0.00035706902,0.00034836034,0.0000033667352],"category_scores_gemma":[0.0002358192,0.0001869735,0.00009302193,0.000500905,0.000069083566,0.000015623305,0.00006689508,0.00057374313,0.0000011625009],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000100340534,0.000075053555,0.0046745096,0.000038866612,0.000025659376,0.000023068287,0.00024483076,0.030633472,0.95743924,0.00008948748,0.00011316371,0.0065423325],"study_design_scores_gemma":[0.0010617207,0.00010477671,0.026835855,0.00009416717,0.000023895718,0.00013340256,0.000190253,0.01015924,0.95880914,0.00047304883,0.0017898512,0.00032466423],"about_ca_topic_score_codex":0.00020339226,"about_ca_topic_score_gemma":0.00051082904,"teacher_disagreement_score":0.022161344,"about_ca_system_score_codex":0.00016420899,"about_ca_system_score_gemma":0.0001507754,"threshold_uncertainty_score":0.76245576},"labels":[],"label_agreement":null},{"id":"W2057646266","doi":"10.1038/nprot.2007.58","title":"Purification of mitochondrial and plastid DNA","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"Canadian Institute for Advanced Research","keywords":"Plastid; Mitochondrial DNA; Computational biology; DNA; Biology; Mitochondrion; Genetics; Evolutionary biology; Cell biology; Chloroplast; Gene","score_opus":0.009929307452668429,"score_gpt":0.29757915982859107,"score_spread":0.28764985237592267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057646266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8210134,0.00071235455,0.048630554,0.00052290555,0.0024998328,0.1022328,0.000082588645,0.00008107594,0.024224482],"genre_scores_gemma":[0.8953376,0.000036318157,0.063570455,0.001472187,0.0057079233,0.028657634,0.00036929827,0.000089678564,0.0047589256],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993509,0.00003144256,0.00017832026,0.0002244177,0.00009112388,0.00012376804],"domain_scores_gemma":[0.9995516,0.00001729618,0.00009029363,0.0001979552,0.00008981856,0.00005306427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016347699,0.00008590207,0.00009977808,0.00004380818,0.000032173215,0.000007257925,0.0000821834,0.00043995093,0.000023231089],"category_scores_gemma":[0.00019282987,0.000076529286,0.000037522328,0.00006534755,0.00005732425,0.0000023267505,0.00003194103,0.00016215116,0.0000040251502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061855925,0.00003310754,0.0011000768,0.000018955003,0.000008627202,0.0000010477703,0.000015991509,6.062928e-7,0.9916013,0.0006179469,0.0038973184,0.002086452],"study_design_scores_gemma":[0.0007093327,0.00030467403,0.002878647,0.000011667286,0.000004105008,0.000016055543,0.000008765988,0.0000013907045,0.7506536,0.00006588863,0.24527009,0.000075748736],"about_ca_topic_score_codex":0.0000013511218,"about_ca_topic_score_gemma":0.000011687338,"teacher_disagreement_score":0.24137276,"about_ca_system_score_codex":0.0000037045174,"about_ca_system_score_gemma":0.000029628924,"threshold_uncertainty_score":0.33933043},"labels":[],"label_agreement":null},{"id":"W2057684979","doi":"10.1038/nprot.2007.16","title":"Microtiter plate transformation using the LiAc/SS carrier DNA/PEG method","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Microtiter plate; Transformation (genetics); Yeast; PEG ratio; Throughput; DNA; Protocol (science); Computational biology; Chemistry; Molecular biology; Computer science; Chromatography; Biology; Biochemistry; Gene; Medicine; Telecommunications","score_opus":0.022337804661405405,"score_gpt":0.399210644962104,"score_spread":0.3768728403006986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057684979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6445672,0.0015998957,0.18158878,0.0016281017,0.00076411915,0.15744188,0.0002184718,0.000070969836,0.012120605],"genre_scores_gemma":[0.92884755,0.000029120862,0.037583847,0.0027437918,0.0021591224,0.023766927,0.00019156028,0.000131181,0.0045468844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988387,0.00009412239,0.00021099021,0.00024757592,0.00026162434,0.00034695768],"domain_scores_gemma":[0.9993629,0.000020032838,0.00005532394,0.00031110286,0.00016660514,0.00008403529],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089104957,0.00014748308,0.00010529095,0.000047988706,0.00015396682,0.00005972532,0.00028787935,0.00044935546,0.000027017963],"category_scores_gemma":[0.000045927798,0.00009837086,0.000100003635,0.00015935638,0.000051793366,0.000005732911,0.00007191375,0.00047725532,0.000006800184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024068917,0.000023099223,0.00026627415,0.000045265257,0.000027917116,0.0000034524937,0.00012772514,0.000055994344,0.99327785,0.000078162244,0.00058181834,0.00527176],"study_design_scores_gemma":[0.00037081286,0.00009476693,0.0003525161,0.000022442699,0.000006007129,0.000024463547,0.000029414985,0.00017822835,0.76442826,0.00007593229,0.23430507,0.00011209488],"about_ca_topic_score_codex":0.000009250789,"about_ca_topic_score_gemma":0.000032849763,"teacher_disagreement_score":0.2842804,"about_ca_system_score_codex":0.00002018715,"about_ca_system_score_gemma":0.00008348389,"threshold_uncertainty_score":0.4011447},"labels":[],"label_agreement":null},{"id":"W2058242681","doi":"10.1038/nprot.2006.200","title":"Non-SELEX: selection of aptamers without intermediate amplification of candidate oligonucleotides","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":173,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Systematic evolution of ligands by exponential enrichment; Aptamer; Oligonucleotide; Computational biology; Biology; Selection (genetic algorithm); SELEX Aptamer Technique; DNA; Genomic library; DNA sequencing; Genetics; RNA; Base sequence; Computer science; Gene","score_opus":0.005032136114562603,"score_gpt":0.3003755846766836,"score_spread":0.295343448562121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058242681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9828673,0.000028426772,0.0036563182,0.00004003793,0.000026596774,0.012463353,0.00003114846,0.00004093253,0.0008458993],"genre_scores_gemma":[0.9900386,0.000008990052,0.0078079132,0.00003307997,0.00010231374,0.001787345,0.00008859641,0.000014101845,0.00011911078],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921054,0.000027040142,0.00027924674,0.00023287458,0.00012475268,0.00012557345],"domain_scores_gemma":[0.99920434,0.0000044086746,0.00030994116,0.00021652433,0.00024267597,0.00002210882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014383979,0.000120865916,0.00018724702,0.000077104305,0.00002903076,0.0000075209764,0.00011820164,0.00026371246,0.000001223948],"category_scores_gemma":[0.000033784225,0.00010128015,0.00008902271,0.00017888626,0.00010499525,0.0000047074877,0.000029926068,0.00014186514,3.9162495e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015482864,0.00006240945,0.0184989,0.000051893956,0.0000270025,1.3834281e-7,0.000004481103,0.000006094341,0.97887194,0.000055394186,0.0004489037,0.0018180142],"study_design_scores_gemma":[0.0002644567,0.00022547587,0.013554336,0.000065791755,0.00001873942,0.0000026020566,0.0000075086027,0.000071706345,0.9824098,0.00014796067,0.00312382,0.00010780627],"about_ca_topic_score_codex":0.000048389033,"about_ca_topic_score_gemma":0.00008808378,"teacher_disagreement_score":0.010676008,"about_ca_system_score_codex":0.000013353123,"about_ca_system_score_gemma":0.0000376617,"threshold_uncertainty_score":0.41300848},"labels":[],"label_agreement":null},{"id":"W2060481943","doi":"10.1038/nprot.2007.427","title":"Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":220,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Saccharomyces cerevisiae; Mutant; Gene; Genetics; Computational biology; Genome; DNA microarray; Gene expression","score_opus":0.01084029872755406,"score_gpt":0.34510790438604644,"score_spread":0.3342676056584924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060481943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9820389,0.0010612016,0.0005339512,0.00008298407,0.000021229356,0.015367281,0.00005499572,0.000009589755,0.0008298798],"genre_scores_gemma":[0.99451685,0.000056734985,0.0010118661,0.00013064402,0.00011426367,0.0037545098,0.00018672833,0.000018448125,0.00020993757],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983301,0.00009250811,0.00040614826,0.00042646786,0.00037422602,0.0003705454],"domain_scores_gemma":[0.9991148,0.00002660711,0.00013265877,0.00038394766,0.00023722432,0.00010474016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006926906,0.0001808913,0.00031287136,0.00033996275,0.000042588294,0.000024977298,0.0003650256,0.0004952001,0.000060953214],"category_scores_gemma":[0.00019894175,0.0001514644,0.00018615444,0.00092865684,0.000060004353,0.0000044211706,0.00012450955,0.00035060852,0.0000048136194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003685479,0.000109587505,0.05853469,0.00005832165,0.00026845097,0.000008569073,0.00004229538,0.0002494047,0.9390333,0.00001811239,0.000061875486,0.0012468181],"study_design_scores_gemma":[0.0005856113,0.00017789539,0.2245017,0.000026171323,0.00005609343,0.000001983677,0.000027774613,0.00006346149,0.76686984,0.00004506636,0.0074808444,0.0001635442],"about_ca_topic_score_codex":0.000018181061,"about_ca_topic_score_gemma":0.0002556815,"teacher_disagreement_score":0.17216347,"about_ca_system_score_codex":0.000027840293,"about_ca_system_score_gemma":0.00007616716,"threshold_uncertainty_score":0.6176539},"labels":[],"label_agreement":null},{"id":"W2060528855","doi":"10.1038/nprot.2006.422","title":"Isolation of skin-derived precursors (SKPs) and differentiation and enrichment of their Schwann cell progeny","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Nerve injury and regeneration","field":"Neuroscience","cited_by":222,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; SickKids Foundation; University of Toronto","funders":"","keywords":"Cell biology; Schwann cell; Biology; Neuregulin; Stem cell; Cellular differentiation; Genetics; Signal transduction; Gene","score_opus":0.011271190644410806,"score_gpt":0.26871495629230696,"score_spread":0.25744376564789617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060528855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97234476,0.00009950404,0.0005998267,0.000053946333,0.000036444566,0.026456866,0.000018489904,0.000017903389,0.00037224524],"genre_scores_gemma":[0.9924187,0.000004478536,0.00058629183,0.000019368066,0.000048606096,0.006821881,0.000007143068,0.000008081967,0.00008545412],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991498,0.00010781648,0.00023428365,0.00023278376,0.00017889764,0.00009642587],"domain_scores_gemma":[0.99948674,0.000049416976,0.00025414795,0.00012188262,0.000065670596,0.000022143593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011141753,0.00010774992,0.00013947173,0.00006882707,0.00006908918,0.000025768646,0.00006707975,0.00016558809,0.0000048638703],"category_scores_gemma":[0.000030419704,0.000079656056,0.000028672364,0.00013126533,0.00007236569,0.00015661564,0.00003316556,0.00014708868,2.8354268e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000084085674,0.00014169763,0.0035012227,0.00017654448,0.0000018844196,1.965919e-7,0.00014171019,0.000013519723,0.99212646,0.0027214764,0.000023760445,0.0010674305],"study_design_scores_gemma":[0.00054049754,0.00019847856,0.022177814,0.000053425225,0.0000067283845,0.0000014590742,0.000008048746,0.00060976954,0.97465575,0.0014868561,0.00018326963,0.00007789802],"about_ca_topic_score_codex":0.000004440727,"about_ca_topic_score_gemma":0.0000042224174,"teacher_disagreement_score":0.020073922,"about_ca_system_score_codex":0.000010048655,"about_ca_system_score_gemma":0.000018774057,"threshold_uncertainty_score":0.32482797},"labels":[],"label_agreement":null},{"id":"W2060756795","doi":"10.1038/nprot.2007.15","title":"Large-scale high-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":417,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Transformation (genetics); Yeast; Saccharomyces cerevisiae; Transformation efficiency; Plasmid; Genomic library; PEG ratio; DNA; Protoplast; Computational biology; Molecular biology; Chemistry; Biology; Cell biology; Computer science; Biochemistry; Gene; Base sequence; Agrobacterium","score_opus":0.015763736650399516,"score_gpt":0.37128720667836557,"score_spread":0.355523470027966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060756795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5369569,0.0007897449,0.3764215,0.0007628105,0.0005684894,0.077682994,0.00030097773,0.000058063404,0.0064585134],"genre_scores_gemma":[0.98093474,0.000008787918,0.008767819,0.00051676,0.0007964001,0.007667055,0.000088914494,0.000046189398,0.001173317],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984577,0.00011824326,0.00024234032,0.0003103885,0.00040213097,0.00046925567],"domain_scores_gemma":[0.9992157,0.000017181826,0.00006614378,0.0003825752,0.00020851885,0.000109868335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012393793,0.0001664924,0.00012908077,0.00005562549,0.00023604832,0.000057616682,0.0003678445,0.0004648215,0.000034242625],"category_scores_gemma":[0.00006290583,0.00011395479,0.0001060906,0.00026545208,0.000058882793,0.0000067248307,0.00009622059,0.0005089683,0.000007660113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002120021,0.00009257029,0.00024766722,0.000054420954,0.00002126948,0.0000032059295,0.00032803274,0.00017631764,0.99464846,0.0003329044,0.0004521564,0.0034309882],"study_design_scores_gemma":[0.00061996083,0.00017368744,0.00070842885,0.00002555068,0.000009326615,0.000018042443,0.00019577512,0.0008776985,0.8299538,0.000102085156,0.16715237,0.00016326958],"about_ca_topic_score_codex":0.000011336528,"about_ca_topic_score_gemma":0.000069720234,"teacher_disagreement_score":0.44397786,"about_ca_system_score_codex":0.000025925776,"about_ca_system_score_gemma":0.00012062621,"threshold_uncertainty_score":0.46469414},"labels":[],"label_agreement":null},{"id":"W2061720107","doi":"10.1038/nprot.2006.108","title":"NMR: prediction of protein flexibility","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Institute for Nanotechnology; Athabasca University; University of Alberta","funders":"","keywords":"Flexibility (engineering); Random coil; Protocol (science); Chemical shift; Computer science; Biological system; Data mining; Chemistry; Nuclear magnetic resonance; Physics; Mathematics; Statistics; Protein secondary structure; Biochemistry; Biology","score_opus":0.006851904992918828,"score_gpt":0.2792271620513668,"score_spread":0.27237525705844795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061720107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8166565,0.000716803,0.011800422,0.00016011922,0.00012448577,0.15287113,0.00038508297,0.00010956767,0.017175931],"genre_scores_gemma":[0.9693968,5.958553e-7,0.0036574064,0.000053798594,0.00034349028,0.025782738,0.00015564713,0.000015494968,0.0005940056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912727,0.00004183963,0.00022868575,0.0002826589,0.00016637222,0.00015315441],"domain_scores_gemma":[0.99931276,0.0000028619193,0.00011511577,0.00040527483,0.00013491996,0.000029096209],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001665189,0.00012382104,0.00012653315,0.000027166157,0.000037823567,0.0000106383395,0.00016330631,0.00050113886,0.000010730858],"category_scores_gemma":[0.00006636647,0.000106136424,0.00008134479,0.00009332372,0.000066605375,0.000003866008,0.000060647377,0.00022783144,0.0000014658292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024216737,0.00009110785,0.006212514,0.00012060222,0.000014818231,8.7797275e-7,0.0000035146313,0.00005328725,0.9866473,0.0037020638,0.0009250707,0.0019866668],"study_design_scores_gemma":[0.0007085019,0.00037880588,0.01275888,0.000046072804,0.0000062242693,0.0000065325307,0.0000022708052,0.0000694902,0.90658617,0.010140181,0.06916667,0.00013018012],"about_ca_topic_score_codex":0.000018562012,"about_ca_topic_score_gemma":0.000022565326,"teacher_disagreement_score":0.15274036,"about_ca_system_score_codex":0.00001308212,"about_ca_system_score_gemma":0.00006864418,"threshold_uncertainty_score":0.43281177},"labels":[],"label_agreement":null},{"id":"W2062400828","doi":"10.1038/nprot.2010.127","title":"Synthesis of peptide macrocycles using unprotected amino aldehydes","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Chemical Synthesis and Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Aziridine; Peptide; Combinatorial chemistry; Nucleophile; Chemistry; Aldehyde; Dimer; Reagent; Ring (chemistry); Peptide synthesis; Isocyanide; Stereochemistry; Organic chemistry; Biochemistry; Catalysis","score_opus":0.008396949399112046,"score_gpt":0.2961711555763482,"score_spread":0.28777420617723615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062400828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99108255,0.000060498027,0.00015158612,0.00007297446,0.000021007367,0.007872097,0.000024345443,0.000024244606,0.0006907114],"genre_scores_gemma":[0.9858436,0.0000028949598,0.0066475435,0.00005324352,0.00021596157,0.007126113,0.0000071103286,0.000029674577,0.0000738756],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990453,0.000036900845,0.00023699773,0.0003119338,0.00017144153,0.00019738641],"domain_scores_gemma":[0.99922127,0.000034420646,0.00015287472,0.00039778807,0.00012427523,0.00006940334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015835017,0.00015968483,0.00023548132,0.000042867865,0.000057210218,0.000021917867,0.00027394132,0.00051856425,0.00007520174],"category_scores_gemma":[0.00057246245,0.0001309563,0.00019252437,0.00013835535,0.000099667384,0.0000034452153,0.00009409902,0.0003454478,0.0000033613412],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005910382,0.00007390558,0.002568246,0.000056910623,0.000058781974,9.710672e-7,0.000003621267,0.0000035029339,0.99161136,0.000057351383,0.00014291139,0.005363337],"study_design_scores_gemma":[0.00015495795,0.00002657177,0.0011113452,0.00006131956,0.000032988497,0.000006144174,0.000007757049,0.00007272767,0.9777325,0.00010447927,0.02052869,0.0001605648],"about_ca_topic_score_codex":0.00002935454,"about_ca_topic_score_gemma":0.000044895703,"teacher_disagreement_score":0.02038578,"about_ca_system_score_codex":0.000006656651,"about_ca_system_score_gemma":0.00003974488,"threshold_uncertainty_score":0.53402424},"labels":[],"label_agreement":null},{"id":"W2063588291","doi":"10.1038/nprot.2015.012","title":"Synthesis and use of an asymmetric transfer hydrogenation catalyst based on iron(II) for the synthesis of enantioenriched alcohols and amines","year":2015,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Asymmetric Hydrogenation and Catalysis","field":"Chemistry","cited_by":65,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Transfer hydrogenation; Enantiopure drug; Catalysis; Ruthenium; Chemistry; Organic chemistry; Imine; Alcohol; Noyori asymmetric hydrogenation; Enantiomeric excess; Amine gas treating; Enantioselective synthesis; Combinatorial chemistry","score_opus":0.029344019536187607,"score_gpt":0.2940671100361507,"score_spread":0.2647230904999631,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063588291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9310657,0.00081056973,0.0035671417,0.0014039233,0.000059434187,0.059380148,0.0012890338,0.00017455756,0.0022494858],"genre_scores_gemma":[0.966292,0.000007830541,0.0007771194,0.00008075187,0.000040250074,0.032654423,0.000040479074,0.000031794185,0.00007534811],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983958,0.00006789607,0.00043394283,0.00037510923,0.0005402829,0.00018699071],"domain_scores_gemma":[0.99694055,0.0018887516,0.00021017948,0.00048781748,0.0003411776,0.00013151042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006525023,0.00023088168,0.000416316,0.00039941297,0.000116930285,0.000044877615,0.0002462386,0.00038433517,0.000016317088],"category_scores_gemma":[0.0034294464,0.0001589339,0.00013390952,0.00083142705,0.0001049553,0.00020898212,0.000032592452,0.00019949245,4.530547e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004481858,0.0037959462,0.016694888,0.004571246,0.0013112108,0.000009770975,0.0013436828,0.00151606,0.22548798,0.0031260625,0.001267459,0.73639387],"study_design_scores_gemma":[0.0011926612,0.00012939818,0.0006321518,0.00011020746,0.0002969882,0.0000036942508,0.000107019245,0.019797752,0.9728688,0.00003735475,0.004620781,0.00020316298],"about_ca_topic_score_codex":0.000041056843,"about_ca_topic_score_gemma":0.000016067988,"teacher_disagreement_score":0.74738085,"about_ca_system_score_codex":0.000043216154,"about_ca_system_score_gemma":0.000059892984,"threshold_uncertainty_score":0.6481136},"labels":[],"label_agreement":null},{"id":"W2064037605","doi":"10.1038/nprot.2009.201","title":"EOS lentiviral vector selection system for human induced pluripotent stem cells","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation","funders":"Canadian Institutes of Health Research","keywords":"Induced pluripotent stem cell; Reprogramming; Viral vector; Biology; Embryonic stem cell; Stem cell; Cell biology; Computational biology; Cell; Genetics; Gene; Recombinant DNA","score_opus":0.021568781704898274,"score_gpt":0.3288731821088641,"score_spread":0.30730440040396584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064037605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7257419,0.00025297157,0.0036003324,0.00046438377,0.00048062863,0.2657982,0.00011240419,0.00027481306,0.003274336],"genre_scores_gemma":[0.95246774,0.0000010456624,0.00035035933,0.00011434393,0.0005990954,0.04463918,0.000059332644,0.000037899354,0.0017309743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99802405,0.00013140262,0.00031360748,0.00063102075,0.00037723998,0.0005226659],"domain_scores_gemma":[0.999034,0.000011272563,0.00014916845,0.0003953579,0.00028278114,0.00012740606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035410374,0.00026646504,0.00024982885,0.00009827787,0.00023317433,0.00009331759,0.0003808471,0.0007357519,0.000005094432],"category_scores_gemma":[0.000017557557,0.00024463906,0.00019502561,0.00017388584,0.00002235862,0.000009777919,0.00006877945,0.0004770095,0.000018393694],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032538577,0.00013634925,0.000119732045,0.00022928105,0.00004131236,0.0000033269607,0.000010198121,0.000012901393,0.9937223,0.0004631881,0.0020921582,0.0028438368],"study_design_scores_gemma":[0.0014916298,0.0017284644,0.0004200258,0.00010882717,0.000012843469,0.000012673196,0.000023031345,0.00009605703,0.96365905,0.0000452997,0.03213279,0.00026933954],"about_ca_topic_score_codex":0.0000060389293,"about_ca_topic_score_gemma":0.000011788762,"teacher_disagreement_score":0.22672585,"about_ca_system_score_codex":0.0001270977,"about_ca_system_score_gemma":0.000112239395,"threshold_uncertainty_score":0.9976091},"labels":[],"label_agreement":null},{"id":"W2064664633","doi":"10.1038/nprot.2008.173","title":"One-way PCR-based mapping of a replication initiation point (RIP)","year":2008,"lang":"en","type":"article","venue":"Nature Protocols","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; Sudbury Regional Hospital; Northeast Cancer Centre; University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Biology; Agarose gel electrophoresis; Computational biology; DNA replication; Primer extension; DNA; Primer (cosmetics); Molecular biology; Polymerase chain reaction; Genetics; Chemistry; Gene; Base sequence","score_opus":0.03035080966532194,"score_gpt":0.3045184858127243,"score_spread":0.27416767614740234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064664633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7962123,0.00027007112,0.044523563,0.0010405289,0.00014377471,0.14794181,0.000059409333,0.00018927861,0.009619264],"genre_scores_gemma":[0.94685245,0.0000028209981,0.013455598,0.00053406466,0.00011841766,0.038768236,0.00013091725,0.000021332848,0.00011617903],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999017,0.000060636165,0.0002362109,0.00035460206,0.00019460812,0.00013693089],"domain_scores_gemma":[0.998878,0.00000945944,0.00019722206,0.0006682359,0.00020631099,0.00004077748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026524963,0.00010506795,0.00012788876,0.000059129787,0.00005225382,0.0000063744737,0.0001652712,0.00038575893,0.000014690566],"category_scores_gemma":[0.00028112147,0.00011075748,0.00008235029,0.00013169528,0.000034152155,0.000005162801,0.000044118307,0.00017893387,0.0000057045268],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109083274,0.00011403272,0.00080373354,0.00007478228,0.0000149947855,0.0000012702274,0.000031584168,0.000012119878,0.9963193,0.00041338668,0.00053288933,0.0015728408],"study_design_scores_gemma":[0.00071192015,0.00028159108,0.003795787,0.000074818876,0.0000041564476,0.00000785252,0.0000061611067,0.000107347485,0.97955906,0.0003577396,0.014971896,0.000121648896],"about_ca_topic_score_codex":0.0000026619905,"about_ca_topic_score_gemma":0.0000022088407,"teacher_disagreement_score":0.15064013,"about_ca_system_score_codex":0.000021665328,"about_ca_system_score_gemma":0.00010563954,"threshold_uncertainty_score":0.4516559},"labels":[],"label_agreement":null},{"id":"W2065269485","doi":"10.1038/nprot.2014.041","title":"Preparation of the planarian Schmidtea mediterranea for high-resolution histology and transmission electron microscopy","year":2014,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Planarian Biology and Electrostimulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Mennonite University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Howard Hughes Medical Institute","keywords":"Planarian; Biology; Ultrastructure; Fixative; Flatworm; Troubleshooting; Stem cell biology; Protocol (science); Evolutionary biology; Regeneration (biology); Zoology; Cell biology; Computer science; Anatomy; Pathology; Embryo; Cryopreservation","score_opus":0.005875149340485818,"score_gpt":0.31522403994543097,"score_spread":0.30934889060494514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065269485","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7868066,0.0011198671,0.11792459,0.012474024,0.0004867954,0.08052251,0.00010108939,0.00005094195,0.0005136079],"genre_scores_gemma":[0.99320364,0.000004154065,0.0010178649,0.0005269344,0.00017057337,0.0046789334,0.00027269314,0.000008779081,0.000116428324],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929047,0.000111955625,0.00015579676,0.00022978586,0.000057399193,0.0001545774],"domain_scores_gemma":[0.9996046,0.000026535043,0.000116849005,0.0001686067,0.000057674115,0.000025735062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002333824,0.00009958152,0.00012091333,0.000025391011,0.00011940478,0.000005963867,0.00011373467,0.0005747455,0.0000021613073],"category_scores_gemma":[0.00010703721,0.00007154675,0.000038884704,0.00004277867,0.00007191576,0.000004506895,0.000015097279,0.00016574727,2.6274208e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015530342,0.000025681908,0.00089188636,0.00004955515,0.000017432687,3.336031e-8,0.000023428953,0.000040643652,0.9898676,0.0015210302,0.0045650653,0.0014445852],"study_design_scores_gemma":[0.0010679741,0.0010700463,0.0047595617,0.00002927007,0.00001783541,0.000009106446,6.5311593e-7,0.0006564161,0.84089607,0.0016575255,0.14974178,0.00009372817],"about_ca_topic_score_codex":0.000005012497,"about_ca_topic_score_gemma":0.000030922525,"teacher_disagreement_score":0.20639707,"about_ca_system_score_codex":0.000011804153,"about_ca_system_score_gemma":0.00004577864,"threshold_uncertainty_score":0.4432964},"labels":[],"label_agreement":null},{"id":"W2065790323","doi":"10.1038/nprot.2007.4","title":"In vivo models of proliferative vitreoretinopathy","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Retinal and Macular Surgery","field":"Medicine","cited_by":127,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Eye Institute; National Institutes of Health","keywords":"Proliferative vitreoretinopathy; In vivo; Computational biology; Biology; Cell biology; Genetics; Retinal detachment; Retinal; Botany","score_opus":0.01626871833232017,"score_gpt":0.344742433906889,"score_spread":0.32847371557456884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065790323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5572717,0.00038092557,0.0023941388,0.0018657682,0.00017855265,0.2987879,0.00002283727,0.0001167421,0.13898146],"genre_scores_gemma":[0.97062373,0.000002179406,0.0025262176,0.00094306126,0.00015889195,0.024847556,0.0000029507455,0.000019767944,0.00087564497],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989031,0.000032813303,0.00032149913,0.00019617556,0.0003194889,0.00022694586],"domain_scores_gemma":[0.9993965,0.000060358787,0.000097367614,0.0001906288,0.00017062755,0.000084538406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006990216,0.00012172519,0.00032504453,0.00016801819,0.000014329781,0.000004505567,0.000065567714,0.00027708686,0.000067795096],"category_scores_gemma":[0.00013893427,0.000089534195,0.00009374311,0.00029807433,0.000054021384,0.00009021514,0.000027039181,0.0005576003,0.0000037371126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.021045325,0.0033285718,0.18966083,0.0035172657,0.00017621272,0.0030876985,0.0036375078,0.000062102255,0.667623,0.079904184,0.011865376,0.016091958],"study_design_scores_gemma":[0.002388417,0.0005318539,0.007680349,0.00091590604,0.00001771213,0.000112873095,0.00006601048,0.00028290928,0.95484984,0.007934993,0.025024185,0.00019493021],"about_ca_topic_score_codex":0.000009175788,"about_ca_topic_score_gemma":0.0000070146452,"teacher_disagreement_score":0.41335204,"about_ca_system_score_codex":0.000037628313,"about_ca_system_score_gemma":0.00009419893,"threshold_uncertainty_score":0.36510986},"labels":[],"label_agreement":null},{"id":"W2068674866","doi":"10.1038/nprot.2012.039","title":"Genome-wide copy number analysis of single cells","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":434,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Cancer Institute","keywords":"Copy-number variation; Genome; Single cell sequencing; Biology; DNA sequencing; Computational biology; Genomics; Copy number analysis; Sorting; Genetics; DNA; Phenotype; Gene; Computer science; Exome sequencing; Algorithm","score_opus":0.009892517596263738,"score_gpt":0.2766138917601147,"score_spread":0.26672137416385094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068674866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98055995,0.00017219679,0.00066233875,0.000036565907,0.00007614173,0.009749801,0.00010023941,0.000011462765,0.0086312955],"genre_scores_gemma":[0.99188673,0.0000028664488,0.001520858,0.00016068254,0.00016834683,0.005161251,0.00013311382,0.00001212281,0.00095404685],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928075,0.000041094023,0.00019992901,0.00015153314,0.00011185771,0.00021481395],"domain_scores_gemma":[0.99940336,0.0000118083635,0.00011850308,0.00029852122,0.00010301841,0.00006479806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015135476,0.00010960341,0.00017987887,0.000051183815,0.00004008018,0.000014004774,0.00015170815,0.00026662793,0.00026944323],"category_scores_gemma":[0.000027846974,0.00009801325,0.00015425246,0.00023037558,0.00003272211,0.000005448285,0.0000679991,0.00010540985,0.000018130051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005111349,0.00022945767,0.3587965,0.000038613307,0.0005084777,3.0671652e-7,0.00013352037,0.00008279352,0.6391594,0.00031382198,0.0006283756,0.000057616802],"study_design_scores_gemma":[0.00023886406,0.00007826629,0.067366906,0.000005789508,0.00015495915,0.0000018226979,0.00004464399,0.0000028052855,0.7811234,0.000027546506,0.15080857,0.00014640366],"about_ca_topic_score_codex":0.0000067553315,"about_ca_topic_score_gemma":0.0000078157,"teacher_disagreement_score":0.29142958,"about_ca_system_score_codex":0.00001541558,"about_ca_system_score_gemma":0.000030401075,"threshold_uncertainty_score":0.39968646},"labels":[],"label_agreement":null},{"id":"W2070405344","doi":"10.1038/nprot.2006.263","title":"Flow cytometry and FISH to measure the average length of telomeres (flow FISH)","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":445,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Cancer Institute; National Institutes of Health","keywords":"Telomere; Flow cytometry; Peptide nucleic acid; Fish <Actinopterygii>; Biology; Pipette; Nucleic acid; Fluorescence in situ hybridization; Cytometry; Computational biology; DNA; Molecular biology; Genetics; Chromosome; Chemistry; Gene","score_opus":0.014175046273622092,"score_gpt":0.29257687349269135,"score_spread":0.27840182721906925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070405344","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5025424,0.0022332415,0.0014762217,0.034680672,0.0007550961,0.4252727,0.00092797424,0.00083254656,0.031279154],"genre_scores_gemma":[0.9644686,0.0000138062105,0.004504524,0.005199486,0.0007442982,0.023208117,0.000039779785,0.000064842316,0.0017565554],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99776185,0.00010073986,0.00043449123,0.000474115,0.0008012524,0.00042756222],"domain_scores_gemma":[0.9984929,0.00019005784,0.00013975531,0.00067169336,0.00031776718,0.00018785815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005011574,0.000312225,0.0005420879,0.00023927115,0.00015556914,0.000059349382,0.00030144578,0.00045324463,0.00013036905],"category_scores_gemma":[0.0004907511,0.00020530382,0.0001355749,0.0008127214,0.00014751464,0.000112914306,0.00009887555,0.0009814712,0.000012983894],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004803097,0.0018273673,0.18646355,0.0035295405,0.00047280602,0.00039233983,0.0022859836,0.00025424204,0.07450674,0.001110779,0.39919236,0.3251612],"study_design_scores_gemma":[0.004999529,0.0010376113,0.4113331,0.0015022043,0.00012163853,0.0002179107,0.0001554357,0.0007231488,0.09499147,0.00042425992,0.48379043,0.00070326164],"about_ca_topic_score_codex":0.000058502512,"about_ca_topic_score_gemma":0.0001847348,"teacher_disagreement_score":0.4619262,"about_ca_system_score_codex":0.00005588024,"about_ca_system_score_gemma":0.00012725929,"threshold_uncertainty_score":0.8372047},"labels":[],"label_agreement":null},{"id":"W2071035686","doi":"10.1038/nprot.2010.148","title":"Quantitation of human mammary epithelial stem cells with in vivo regenerative properties using a subrenal capsule xenotransplantation assay","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Cancer Research UK","keywords":"Xenotransplantation; Stem cell; Clonogenic assay; Biology; Regenerative medicine; Cell biology; In vivo; Mesenchymal stem cell; Mammary gland; Tissue engineering; Renal capsule; Transplantation; Medicine; Kidney; Cancer; Internal medicine; Endocrinology","score_opus":0.035075267360489604,"score_gpt":0.32661528051128336,"score_spread":0.29154001315079375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071035686","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96257824,0.00006900955,0.00093157456,0.00007177158,0.0000741088,0.03588809,0.00004561593,0.000022320924,0.0003192892],"genre_scores_gemma":[0.9783764,0.0000028497243,0.01089598,0.00006008771,0.00012221835,0.010297278,0.0000110421015,0.000023311146,0.00021086588],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989309,0.000073880285,0.00027955492,0.00023458728,0.00031945034,0.00016164068],"domain_scores_gemma":[0.99934846,0.000013423917,0.00016526,0.00019361636,0.0002259559,0.0000532982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033558518,0.00014710744,0.00029296312,0.0001441491,0.000058689744,0.000022241667,0.000073421455,0.00021348828,0.000028520124],"category_scores_gemma":[0.000007939762,0.00010320039,0.000050009086,0.00022655659,0.00006226296,0.00016020176,0.000009679255,0.0005743844,8.1146067e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071628636,0.00014793129,0.0010738485,0.00063597114,0.000029817184,0.00002330262,0.0011180928,0.000029048466,0.9942836,0.0005979422,0.000023221892,0.0013209409],"study_design_scores_gemma":[0.0024184687,0.00049293175,0.0006734582,0.00071726996,0.000051898416,0.000028157765,0.0000955016,0.0002487919,0.9946935,0.000024519446,0.00043097735,0.00012449254],"about_ca_topic_score_codex":0.0002264241,"about_ca_topic_score_gemma":0.001015299,"teacher_disagreement_score":0.02559081,"about_ca_system_score_codex":0.00004759663,"about_ca_system_score_gemma":0.00025510663,"threshold_uncertainty_score":0.42083898},"labels":[],"label_agreement":null},{"id":"W2071099979","doi":"10.1038/nprot.2007.17","title":"Frozen competent yeast cells that can be transformed with high efficiency using the LiAc/SS carrier DNA/PEG method","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":390,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Yeast; PEG ratio; Transformation (genetics); DNA; Molecular biology; Biology; Chemistry; Biochemistry; Gene","score_opus":0.02276099571247803,"score_gpt":0.34392193650591607,"score_spread":0.32116094079343804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071099979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8808972,0.0004781232,0.021819381,0.0011021991,0.00040787164,0.09144345,0.00041042367,0.000050041806,0.0033912885],"genre_scores_gemma":[0.9832971,0.000008631909,0.0070335343,0.00068272516,0.00039872993,0.0070936256,0.000060354636,0.00006077856,0.0013645045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980022,0.0001320569,0.00020899027,0.0004674508,0.0005991004,0.00059025374],"domain_scores_gemma":[0.99899083,0.000030770967,0.000081661216,0.0005077801,0.0002042826,0.00018464519],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075337884,0.0002591438,0.00020883606,0.000050363124,0.00026435292,0.00008656183,0.0005154779,0.0004268173,0.000033125303],"category_scores_gemma":[0.000024621118,0.00015596717,0.00011114753,0.00023856058,0.00015110245,0.0000037728994,0.00010745509,0.0006317939,0.0000016268308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052576605,0.00008750702,0.00073557877,0.000061613675,0.00006089889,0.000013626503,0.00014198894,0.00023784844,0.99635106,0.0000626441,0.00037774924,0.0013437056],"study_design_scores_gemma":[0.000977593,0.000444155,0.00074200745,0.000049473347,0.00002053393,0.000028567576,0.00012904826,0.0000941329,0.9496032,0.000026739162,0.04764541,0.0002391341],"about_ca_topic_score_codex":0.00011983078,"about_ca_topic_score_gemma":0.00036277823,"teacher_disagreement_score":0.10239989,"about_ca_system_score_codex":0.000040904208,"about_ca_system_score_gemma":0.00026458275,"threshold_uncertainty_score":0.63601565},"labels":[],"label_agreement":null},{"id":"W2071855640","doi":"10.1038/nprot.2012.097","title":"Primary culture and immortalization of human fallopian tube secretory epithelial cells","year":2012,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Fallopian tube; Cell culture; Immortalised cell line; Cell biology; Epithelium; Biology; In vitro; Primary culture; Immunology; Anatomy; Genetics","score_opus":0.014076210538741358,"score_gpt":0.32342903659787997,"score_spread":0.3093528260591386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071855640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.59311926,0.006193549,0.00014142864,0.0010804938,0.00074350013,0.34169495,0.0003146479,0.0002691726,0.056442976],"genre_scores_gemma":[0.96596396,0.000031546504,0.001079758,0.00066911936,0.0006256951,0.03066828,0.00010265718,0.00002980357,0.0008292008],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991753,0.000030891948,0.00019734,0.00017795787,0.00023527886,0.0001832216],"domain_scores_gemma":[0.9994511,0.0000117898,0.00010609307,0.00021250307,0.000086837725,0.00013166822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012773761,0.00014428751,0.00027427648,0.0000495326,0.00005194583,0.0000111602485,0.00004604271,0.00030016204,0.00009350798],"category_scores_gemma":[0.000011602501,0.00010496334,0.00006566062,0.00009643009,0.00004757037,0.00010548778,0.000028204819,0.00026124433,0.0000041537155],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041107298,0.0018979051,0.6594595,0.0024599659,0.00038693435,0.000027888314,0.0023084767,0.0000010461478,0.30230206,0.0140344715,0.009454552,0.007256157],"study_design_scores_gemma":[0.004641942,0.0009633108,0.5226077,0.0006399948,0.00021367866,0.000027662814,0.00004330936,0.0000029979376,0.3072766,0.00019699727,0.163154,0.00023182001],"about_ca_topic_score_codex":0.000013245466,"about_ca_topic_score_gemma":0.000004026853,"teacher_disagreement_score":0.37284464,"about_ca_system_score_codex":0.000076151126,"about_ca_system_score_gemma":0.000051160154,"threshold_uncertainty_score":0.4280281},"labels":[],"label_agreement":null},{"id":"W2073059592","doi":"10.1038/nprot.2007.398","title":"A protocol for the in vitro selection of specific oligonucleotide probes for high-resolution DNA typing","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Jewish General Hospital","funders":"","keywords":"Oligonucleotide; Computational biology; Multiplex; Nucleic acid; Biology; Multiplex ligation-dependent probe amplification; Hybridization probe; Typing; Multiplex polymerase chain reaction; DNA sequencing; DNA; Genetics; Polymerase chain reaction; Gene","score_opus":0.01760412802882714,"score_gpt":0.3495308183400088,"score_spread":0.33192669031118166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073059592","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0046939044,0.000015324122,0.1012043,0.00014909465,0.000020422407,0.8938085,0.000019430841,0.000035015266,0.000054014854],"genre_scores_gemma":[0.26434273,7.471011e-7,0.040296994,0.000064563734,0.00023773649,0.6949677,0.000023869441,0.00001658981,0.000049081656],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906456,0.000026060257,0.00029928508,0.00028335175,0.00009000038,0.00023670986],"domain_scores_gemma":[0.9992934,0.00004974783,0.00019623486,0.00020035941,0.00023919946,0.000021073893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069936056,0.0001352492,0.00015750839,0.00007676699,0.000091839494,0.000015566739,0.0001422656,0.00032450052,4.255439e-7],"category_scores_gemma":[0.0001439242,0.00009254073,0.000111523404,0.00020152787,0.000055549517,0.000005215318,0.000029542683,0.00016535597,1.0594652e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00286357,0.00009088466,0.00010056734,0.00011828584,0.00002082269,1.14350385e-7,0.000005906699,0.000011755994,0.98336387,0.00030678464,0.0006218835,0.012495557],"study_design_scores_gemma":[0.0009448048,0.0003585142,0.00043376966,0.00007468562,0.000007499743,0.000002323631,0.000010509284,0.0001841007,0.90056443,0.00046709395,0.096844316,0.00010798185],"about_ca_topic_score_codex":0.0000045418064,"about_ca_topic_score_gemma":0.00005919157,"teacher_disagreement_score":0.25964883,"about_ca_system_score_codex":0.00003501212,"about_ca_system_score_gemma":0.00003838206,"threshold_uncertainty_score":0.37737015},"labels":[],"label_agreement":null},{"id":"W2086227232","doi":"10.1038/nprot.2009.180","title":"Automated solid-phase microextraction and thin-film microextraction for high-throughput analysis of biological fluids and ligand–receptor binding studies","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Analytical chemistry methods development","field":"Chemistry","cited_by":101,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Solid-phase microextraction; Analyte; Chromatography; Sample preparation; Extraction (chemistry); Mass spectrometry; Solid phase extraction; Chemistry; Gas chromatography–mass spectrometry","score_opus":0.04216052818935425,"score_gpt":0.43602036691309204,"score_spread":0.3938598387237378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086227232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9867369,0.00021984929,0.002814382,0.00024951133,0.00010580517,0.009281572,0.00023757538,0.0002636763,0.000090713176],"genre_scores_gemma":[0.85493857,0.0000851396,0.12488425,0.000071176895,0.00025259613,0.019072039,0.00030982343,0.000040885447,0.00034553854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982642,0.00003529887,0.0005769862,0.00061026006,0.00020995153,0.00030330534],"domain_scores_gemma":[0.99827075,0.00064973644,0.00035731093,0.00026053673,0.00033872516,0.00012291888],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006798274,0.00030693493,0.0007074578,0.00015916626,0.00017979082,0.00006284483,0.00014666261,0.000938062,0.00010413741],"category_scores_gemma":[0.0012597442,0.00024675985,0.00013695304,0.0004140305,0.00024297227,0.00016050338,0.00010039479,0.00085555454,0.0000017400541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035576848,0.00021033939,0.002027774,0.0004983395,0.0012959709,0.000002208588,0.00013768606,0.0000021950327,0.9935759,0.00010658433,0.00035889295,0.0014283722],"study_design_scores_gemma":[0.0014670315,0.000084550804,0.0007100633,0.00010393317,0.00053191534,0.000012596033,0.00016770982,0.0024287382,0.9887816,0.00016611992,0.005263062,0.00028269252],"about_ca_topic_score_codex":0.0000052679798,"about_ca_topic_score_gemma":0.000006102066,"teacher_disagreement_score":0.13179836,"about_ca_system_score_codex":0.00008487966,"about_ca_system_score_gemma":0.000053530406,"threshold_uncertainty_score":0.99999845},"labels":[],"label_agreement":null},{"id":"W2086959309","doi":"10.1038/nprot.2007.151","title":"Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":211,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto; University of New Brunswick","funders":"","keywords":"Peptide; Computational biology; Phage display; Peptide library; Fusion protein; Cloning (programming); Peptide sequence; Biology; Chemistry; Computer science; Biochemistry; Gene; Recombinant DNA; Programming language","score_opus":0.0714665355827465,"score_gpt":0.3908065595552885,"score_spread":0.31934002397254196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086959309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.737637,0.0012320423,0.011209735,0.0027189667,0.00042489736,0.22563194,0.0014963206,0.0004864279,0.019162718],"genre_scores_gemma":[0.46355528,0.000080495076,0.3118301,0.0030021933,0.01026775,0.17768855,0.0048609828,0.00029682965,0.028417818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997567,0.000057309313,0.00049772306,0.0005627651,0.0006968185,0.0006183645],"domain_scores_gemma":[0.99835116,0.00054544373,0.00016315117,0.0003205424,0.00035290828,0.00026678634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064335985,0.00029907486,0.00045129572,0.00019678041,0.00028956015,0.00015787999,0.00024244397,0.00046798482,0.00047836968],"category_scores_gemma":[0.00044455013,0.00023664809,0.00026396324,0.00025817298,0.00015139232,0.0003479733,0.00010963468,0.0010490615,0.00012517282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.04665074,0.002060348,0.08042728,0.005589384,0.0010254324,0.00076246634,0.001759366,0.0000026662124,0.51888067,0.010746974,0.12607443,0.20602025],"study_design_scores_gemma":[0.0034890494,0.0006493329,0.121380776,0.0014085411,0.00007777067,0.000047814476,0.00029797023,0.00018279525,0.65695024,0.025130678,0.1898889,0.0004961608],"about_ca_topic_score_codex":0.00010719998,"about_ca_topic_score_gemma":0.000088603134,"teacher_disagreement_score":0.30062038,"about_ca_system_score_codex":0.00007531616,"about_ca_system_score_gemma":0.000115419614,"threshold_uncertainty_score":0.9650229},"labels":[],"label_agreement":null},{"id":"W2087759495","doi":"10.1038/nprot.2013.002","title":"The mouse excisional wound splinting model, including applications for stem cell transplantation","year":2013,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Wound Healing and Treatments","field":"Medicine","cited_by":441,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Natural Science Foundation of China; University of Alberta","keywords":"Wound healing; Stem cell; Granulation tissue; Matrigel; Transplantation; Medicine; Regeneration (biology); Angiogenesis; Wound closure; Progenitor cell; Surgery; Biomedical engineering; Biology; Cell biology; Cancer research","score_opus":0.04735381737145444,"score_gpt":0.38220059866850736,"score_spread":0.3348467812970529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087759495","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14559066,0.00038760298,0.0969689,0.004365821,0.00008246368,0.74585646,0.00010881577,0.00036334374,0.0062759086],"genre_scores_gemma":[0.44918245,0.000009039305,0.014424055,0.00029332767,0.00018356394,0.5322309,0.000085315936,0.000028326825,0.0035629957],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99912703,0.000015038387,0.00022279135,0.00020643139,0.00022178955,0.00020691585],"domain_scores_gemma":[0.99921274,0.00020958159,0.000088780216,0.00021349506,0.0001990433,0.00007633868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000210047,0.000114069626,0.00013113358,0.0000380836,0.00051084487,0.00007473696,0.000091967806,0.0001985914,0.000006013127],"category_scores_gemma":[0.0000100535535,0.00007172314,0.000071968134,0.00008412147,0.000022368022,0.00007812863,0.000011897881,0.00033337538,0.000030921467],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007456118,0.00623825,0.02983045,0.015697412,0.001115805,0.00002844366,0.007373707,0.0055973316,0.19731687,0.09796117,0.039717227,0.59166723],"study_design_scores_gemma":[0.042350933,0.0024483574,0.012462334,0.002245314,0.0010567644,0.0002048642,0.0011940983,0.19243105,0.24087687,0.09933835,0.40339103,0.0020000245],"about_ca_topic_score_codex":0.000008076954,"about_ca_topic_score_gemma":0.0000043285395,"teacher_disagreement_score":0.5896672,"about_ca_system_score_codex":0.000072920484,"about_ca_system_score_gemma":0.00008202773,"threshold_uncertainty_score":0.39290574},"labels":[],"label_agreement":null},{"id":"W2088088087","doi":"10.1038/nprot.2007.21","title":"Synthesis of 3,3′-bis(sulfonato)-4,4′-bis(chloroacetamido)azobenzene and cysteine cross-linking for photo-control of protein conformation and activity","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Click Chemistry and Applications","field":"Chemistry","cited_by":63,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Trent University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Azobenzene; Linker; Cysteine; Intramolecular force; Chemistry; In vitro; Combinatorial chemistry; Thiol; Disulfide bond; Stereochemistry; Biochemistry; Molecule; Organic chemistry; Enzyme; Computer science","score_opus":0.010716350015347032,"score_gpt":0.31858619685556716,"score_spread":0.3078698468402201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088088087","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96384156,0.00014804082,0.002332492,0.00009284842,0.0000068039612,0.029888656,0.00037157914,0.00005218462,0.0032658582],"genre_scores_gemma":[0.95212233,0.0000029847486,0.0008631919,0.000020768148,0.00008109505,0.04671616,0.000015553753,0.000021012313,0.00015692502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986938,0.000010189472,0.0005056441,0.00030277524,0.00024266039,0.00024492654],"domain_scores_gemma":[0.9982824,0.00043814222,0.00058341876,0.00034411883,0.00026516357,0.00008677253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006284544,0.0002143324,0.0004080223,0.000047788177,0.0001255685,0.00003173133,0.00017689132,0.0005647486,0.000027628033],"category_scores_gemma":[0.00041354963,0.00020334002,0.0000906267,0.000120210105,0.00013344144,0.00019208706,0.000053326105,0.00039824593,2.0613565e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011631682,0.00014562185,0.0014789215,0.002977261,0.000052876992,4.5738346e-7,0.000057793564,0.0000040632917,0.9825228,0.0013629615,0.000008007647,0.010226055],"study_design_scores_gemma":[0.0023402849,0.00005761768,0.0006270473,0.00050299807,0.000038493647,0.0000090770645,0.00003434642,0.00040174767,0.98745525,0.0003333448,0.008014095,0.00018571207],"about_ca_topic_score_codex":0.000010153968,"about_ca_topic_score_gemma":0.00000972841,"teacher_disagreement_score":0.016827503,"about_ca_system_score_codex":0.000036570076,"about_ca_system_score_gemma":0.00006750741,"threshold_uncertainty_score":0.8291966},"labels":[],"label_agreement":null},{"id":"W2089083615","doi":"10.1038/nprot.2010.78","title":"Gene function analysis in complex data sets using ErmineJ","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Michael Smith Health Research BC; University of British Columbia","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Computational biology; Function (biology); Biology; Computer science; Bioinformatics; Genetics","score_opus":0.03465628421779254,"score_gpt":0.35061117046426454,"score_spread":0.315954886246472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089083615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92352194,0.00021477739,0.020423792,0.00024117304,0.00039282328,0.05213062,0.00042344216,0.000040498788,0.002610942],"genre_scores_gemma":[0.9725604,0.000002266695,0.021601116,0.0005609175,0.00037742124,0.0024554494,0.002365961,0.000016666298,0.000059813698],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99916154,0.000022221171,0.00022760782,0.0002910305,0.000105037434,0.00019256205],"domain_scores_gemma":[0.99893934,0.00000496714,0.00010241891,0.00084670563,0.000053961812,0.000052586787],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032451394,0.00012279529,0.00015622964,0.00008628575,0.000050588977,0.000041401447,0.00038114836,0.0004754825,0.000043724896],"category_scores_gemma":[0.00003120946,0.000110975016,0.000057589503,0.0002893412,0.000031595406,0.0000075996763,0.00025321936,0.0004553884,0.0000036197744],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022737689,0.00011577135,0.023615738,0.000048635753,0.00032460547,0.000004066397,0.000023219818,0.0007941644,0.948096,0.00010728057,0.0057158004,0.020927357],"study_design_scores_gemma":[0.0029392191,0.0002934745,0.08743381,0.000032022977,0.00037158368,0.000048613332,0.000029966575,0.24576677,0.03865109,0.00079420157,0.62263453,0.0010047083],"about_ca_topic_score_codex":0.00001519225,"about_ca_topic_score_gemma":0.00051371043,"teacher_disagreement_score":0.90944487,"about_ca_system_score_codex":0.0000072013754,"about_ca_system_score_gemma":0.000054026237,"threshold_uncertainty_score":0.452543},"labels":[],"label_agreement":null},{"id":"W2090334686","doi":"10.1038/nprot.2010.103","title":"Intravital imaging of embryonic and tumor neovasculature using viral nanoparticles","year":2010,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":141,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute of Biomedical Imaging and Bioengineering; National Cancer Institute; National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research","keywords":"Nanoparticle; Angiogenesis; Cowpea mosaic virus; Intravital microscopy; Embryonic stem cell; Biocompatibility; Chemistry; Vascular network; Molecular imaging; Nanotechnology; Biomedical engineering; Biophysics; In vivo; Materials science; Biology; Biochemistry; Medicine; Anatomy; Cancer research; RNA","score_opus":0.008983767775341291,"score_gpt":0.32950195296881424,"score_spread":0.32051818519347297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090334686","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887822,0.0004823925,0.000014466931,0.00010171015,0.00004620677,0.010496689,0.000011759498,0.000010489773,0.00005406401],"genre_scores_gemma":[0.99544257,0.0000021731223,0.0015187234,0.0001621293,0.00021235873,0.0025943867,0.00000917352,0.00002782763,0.00003065705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990207,0.000058563735,0.00014656722,0.0003056284,0.00019903737,0.00026950787],"domain_scores_gemma":[0.99933964,0.0000090378135,0.00007134234,0.00037474136,0.000121376914,0.0000838775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031191434,0.00014541349,0.0001490272,0.00005058311,0.00006957221,0.000039150542,0.00020941465,0.0002199671,0.000016947315],"category_scores_gemma":[0.000096827935,0.00012712635,0.00007356585,0.000098640005,0.00016875389,0.000008349428,0.00012785388,0.0005901754,0.0000011918157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006696664,0.00004314052,0.0044458816,0.000045261302,0.000027099097,0.0000052088994,0.000017302818,0.0000066950706,0.99134946,0.000072139315,0.00007977713,0.0032383837],"study_design_scores_gemma":[0.0008440532,0.00045028992,0.0017785844,0.00002792321,0.0000080384725,0.00005767807,0.00001128169,0.0001974144,0.9934345,0.000210657,0.0028305394,0.0001490721],"about_ca_topic_score_codex":0.0000050850276,"about_ca_topic_score_gemma":0.000046211906,"teacher_disagreement_score":0.007902302,"about_ca_system_score_codex":0.000006676311,"about_ca_system_score_gemma":0.00012432827,"threshold_uncertainty_score":0.5184062},"labels":[],"label_agreement":null},{"id":"W2091655993","doi":"10.1038/nprot.2011.407","title":"Measuring and interpreting point spread functions to determine confocal microscope resolution and ensure quality control","year":2011,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":306,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"McGill University","keywords":"Microscope; Confocal; Optics; Lens (geology); Confocal microscopy; Point spread function; 4Pi microscope; Laser; Materials science; Optical microscope; Resolution (logic); Laser scanning; Microscopy; Image quality; Computer science; Sample (material); Confocal laser scanning microscope; Fluorescence microscope; Artificial intelligence; Fluorescence; Physics; Scanning electron microscope; Chemistry; Chromatography; Image (mathematics); Multiphoton fluorescence microscope","score_opus":0.0319930650342615,"score_gpt":0.3323045245922448,"score_spread":0.30031145955798333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091655993","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43836516,0.001239115,0.4658448,0.000398102,0.00017832949,0.09125884,0.00022383929,0.0002457238,0.0022460832],"genre_scores_gemma":[0.9273443,0.0000056790086,0.05734265,0.00062310806,0.00007519684,0.014493529,0.000013308861,0.000026225613,0.000075986565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893475,0.00009236565,0.00023134498,0.0004271265,0.00008568314,0.00022871878],"domain_scores_gemma":[0.9993754,0.000018283583,0.00009055996,0.0002730171,0.00013591797,0.00010683416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038688642,0.00017353629,0.00017830465,0.000043648084,0.00010409341,0.00003199793,0.000114066,0.0003450128,0.0000051514226],"category_scores_gemma":[0.00043307632,0.0001615266,0.000034779983,0.000052022875,0.00011303867,0.000011411282,0.00015141664,0.00031747663,0.0000018676205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006452655,0.000026964977,0.008248309,0.000045300887,0.00001334616,0.0000016033288,0.00010454766,4.0554644e-7,0.9864093,0.00004322745,0.0002852405,0.004176511],"study_design_scores_gemma":[0.00067705114,0.0005590549,0.007971271,0.00022595521,0.000009859325,0.000028893737,0.000040687213,0.000019126388,0.9805613,0.000104674626,0.009571849,0.00023023502],"about_ca_topic_score_codex":0.000024179282,"about_ca_topic_score_gemma":0.000053145028,"teacher_disagreement_score":0.48897916,"about_ca_system_score_codex":0.000021444477,"about_ca_system_score_gemma":0.00002749187,"threshold_uncertainty_score":0.65868634},"labels":[],"label_agreement":null},{"id":"W2091836677","doi":"10.1038/nprot.2007.415","title":"Imaging activation of adult-generated granule cells in spatial memory","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neurogenesis and neuroplasticity mechanisms","field":"Neuroscience","cited_by":67,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Subgranular zone; Neuroscience; Morris water navigation task; Bromodeoxyuridine; Hippocampus; Neurogenesis; Biological neural network; Immunohistochemistry; Immediate early gene; Biology; Cell biology; Gene expression; Neural stem cell; Stem cell; Immunology; Subventricular zone; Gene","score_opus":0.017958146066443043,"score_gpt":0.2961492137169767,"score_spread":0.2781910676505337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091836677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9588966,0.0000018616274,0.0035435907,0.00007136855,0.0002803861,0.036271777,0.000015569496,0.000084393105,0.00083450467],"genre_scores_gemma":[0.9946267,8.4998675e-7,0.00024082801,0.0009592578,0.00008677777,0.0040158294,0.000001301228,0.000027691603,0.000040754105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983842,0.0001311183,0.00035631604,0.00041503448,0.00040998092,0.00030338636],"domain_scores_gemma":[0.9992103,0.00021921712,0.00018682894,0.00022321046,0.00009744982,0.000062994426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002505249,0.00016239943,0.00018786662,0.00022133955,0.000061141785,0.000026116888,0.00024007677,0.00014197557,0.000027362426],"category_scores_gemma":[0.00047936078,0.00014935421,0.000052229007,0.00051853864,0.00004237716,0.00015131645,0.000053322707,0.00048094662,0.0000100965735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030432083,0.00015291531,0.00018574944,0.000047564186,4.511551e-7,0.00004470076,0.000042866173,0.000044071287,0.9957236,0.00058887334,0.00004604497,0.002818811],"study_design_scores_gemma":[0.0008724707,0.00008757264,0.0011811707,0.000072127565,0.0000021329008,0.00000767198,0.0000069484763,0.0006305735,0.996608,0.00008188385,0.0003171556,0.00013228037],"about_ca_topic_score_codex":0.000025508934,"about_ca_topic_score_gemma":0.000025251567,"teacher_disagreement_score":0.03573016,"about_ca_system_score_codex":0.000030259294,"about_ca_system_score_gemma":0.00004354395,"threshold_uncertainty_score":0.6090488},"labels":[],"label_agreement":null},{"id":"W2093569791","doi":"10.1038/nprot.2006.67","title":"Photoconductive stimulation of neurons cultured on silicon wafers","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neuroscience and Neural Engineering","field":"Neuroscience","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute on Drug Abuse","keywords":"Wafer; Photoconductivity; Materials science; Silicon; Optoelectronics; Depolarization; Subthreshold conduction; Microscopy; Stimulation; Substrate (aquarium); Electrophysiology; Biological neural network; Biasing; Transistor; Nanotechnology; Biological system; Biophysics; Optics; Neuroscience; Voltage; Physics; Biology","score_opus":0.0316094101446148,"score_gpt":0.33183624362193653,"score_spread":0.3002268334773217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093569791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89583427,0.00000465496,0.00006414334,0.00028609685,0.00031650197,0.09525999,0.000033020817,0.00026385082,0.007937476],"genre_scores_gemma":[0.9800427,3.2483888e-7,0.000060121005,0.0005062738,0.000083417064,0.018914705,0.000001425805,0.000019400986,0.00037161805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985932,0.00006482512,0.00022864103,0.0004522923,0.00040941942,0.00025160614],"domain_scores_gemma":[0.99937856,0.0001420564,0.00012459654,0.0002658371,0.000041166935,0.000047760117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007214108,0.0001774516,0.00017292355,0.00012555737,0.00009456323,0.000035745186,0.00027354635,0.00015564446,0.000016855443],"category_scores_gemma":[0.0003657374,0.00014206757,0.000079658545,0.00050742814,0.00009860566,0.00026929,0.00003332592,0.00052551355,0.000013629179],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000812294,0.00010003567,0.00009072406,0.00002224962,4.4226573e-7,0.000009157978,0.000020205955,0.002595941,0.9916968,0.004860852,0.00023668694,0.00028572782],"study_design_scores_gemma":[0.00052794936,0.00030116344,0.002084364,0.000046116544,0.0000025033582,0.00000729337,0.0000026840876,0.0015413654,0.99030936,0.0006397204,0.004399238,0.00013823056],"about_ca_topic_score_codex":0.0000057818725,"about_ca_topic_score_gemma":0.0000010992637,"teacher_disagreement_score":0.084208444,"about_ca_system_score_codex":0.000029920915,"about_ca_system_score_gemma":0.000024462312,"threshold_uncertainty_score":0.57933474},"labels":[],"label_agreement":null},{"id":"W2101629470","doi":"10.1038/nprot.2006.288","title":"Silver staining of proteins in polyacrylamide gels","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":572,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"","keywords":"Silver stain; Staining; Polyacrylamide; Stain; Electrophoresis; Chromatography; Polyacrylamide gel electrophoresis; Mass spectrometry; Chemistry; Fixation (population genetics); Molecular biology; Biology; Biochemistry","score_opus":0.008249985199709202,"score_gpt":0.3112988602053018,"score_spread":0.3030488750055926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101629470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47421542,0.0004203763,0.030949803,0.0010950923,0.000023968028,0.30269745,0.00027871208,0.001120115,0.18919906],"genre_scores_gemma":[0.7030859,9.3409415e-7,0.06643692,0.000040389743,0.0000882579,0.2295619,0.000016905731,0.000028240385,0.00074058096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990365,0.000008175697,0.0003259324,0.00024113439,0.00016839911,0.00021985978],"domain_scores_gemma":[0.99933326,0.00003005133,0.00017953399,0.00036274467,0.000068830544,0.00002556776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000112912094,0.00013264298,0.00018360995,0.00006017993,0.00003707028,0.00001359537,0.00024090619,0.00034035376,0.00009781158],"category_scores_gemma":[0.000038239832,0.00012742712,0.00005550874,0.0002097652,0.000044821005,0.00007986314,0.000060841812,0.0006347308,0.0000024910357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056460354,0.00016816599,0.008582104,0.00020712557,0.0000037418724,0.000004236789,0.000026675163,0.00006122721,0.95633334,0.031282667,0.00017811435,0.0030961328],"study_design_scores_gemma":[0.00044466753,0.000018434323,0.0004547237,0.00021252301,0.0000018510989,0.0000020803016,0.0000129019845,0.000063655905,0.93536067,0.03553092,0.02775217,0.00014538202],"about_ca_topic_score_codex":0.00008255258,"about_ca_topic_score_gemma":0.000029692259,"teacher_disagreement_score":0.22887047,"about_ca_system_score_codex":0.000074184085,"about_ca_system_score_gemma":0.00005153304,"threshold_uncertainty_score":0.5196327},"labels":[],"label_agreement":null},{"id":"W2117730418","doi":"10.1038/nprot.2006.283","title":"High-throughput screening of small molecules for bioactivity and target identification in Caenorhabditis elegans","year":2006,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Ontario Innovation Trust","keywords":"Caenorhabditis elegans; Biology; Mutant; High-throughput screening; Small molecule; Phenotypic screening; Agar plate; Model organism; Phenotype; Chemical genetics; Identification (biology); Computational biology; Caenorhabditis; Genetic screen; Genetics; Bacteria; Gene; Botany","score_opus":0.009099879848013536,"score_gpt":0.2672043744126486,"score_spread":0.2581044945646351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117730418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6593377,0.0005114242,0.31070757,0.00030477028,0.00007714581,0.028791687,0.00017796876,0.000018853598,0.000072908275],"genre_scores_gemma":[0.9316383,0.000007954538,0.058864545,0.00007011033,0.00016830355,0.008923533,0.00020139065,0.000025472427,0.00010037647],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901575,0.00004826699,0.00026379072,0.00036813895,0.00010362908,0.00020045307],"domain_scores_gemma":[0.9994175,0.000016368453,0.0001571615,0.00025782437,0.00012089053,0.00003029649],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002489921,0.00014798637,0.0001834909,0.00006035094,0.000053218275,0.000031147687,0.00014595802,0.00035395785,0.0000020841735],"category_scores_gemma":[0.00007255925,0.00015421805,0.000054115535,0.00007837451,0.00007647566,0.0000066850553,0.000055602486,0.0001594829,2.9849e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012671654,0.0001633721,0.013392106,0.00020379352,0.000023686545,0.0000014167808,0.00007287447,0.0009552916,0.98163456,0.0011286044,0.00046031715,0.0018372632],"study_design_scores_gemma":[0.0010029499,0.00020806355,0.04102145,0.00003862427,0.000012116088,0.0000040957684,0.000017685516,0.00047837524,0.9480601,0.002712891,0.006243234,0.00020039044],"about_ca_topic_score_codex":0.00024864817,"about_ca_topic_score_gemma":0.00052435516,"teacher_disagreement_score":0.27230063,"about_ca_system_score_codex":0.000010837785,"about_ca_system_score_gemma":0.000038233233,"threshold_uncertainty_score":0.62888294},"labels":[],"label_agreement":null},{"id":"W2137531873","doi":"10.1038/nprot.2007.324","title":"Integration of biological networks and gene expression data using Cytoscape","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2574,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Computational biology; Biological network; Gene regulatory network; Gene ontology; Functional genomics; Gene expression profiling; Computer science; Interaction network; Systems biology; Genomics; Context (archaeology); Bioinformatics; Gene expression; Biology; Gene; Data mining; Genome; Genetics","score_opus":0.04112985887454766,"score_gpt":0.3468823061421621,"score_spread":0.3057524472676144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137531873","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.35511503,0.0015018936,0.6207961,0.000026881999,0.00013601517,0.021759512,0.00005148321,0.000016661243,0.0005964018],"genre_scores_gemma":[0.9549238,0.000036397207,0.043699373,0.00016640124,0.0003699725,0.0004362353,0.0003434422,0.000010576879,0.000013797427],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929744,0.000022457096,0.00023820472,0.00021467035,0.00007105913,0.00015619663],"domain_scores_gemma":[0.99934304,0.000012850355,0.00013609746,0.00040318095,0.000055533175,0.000049270813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052014395,0.00010407603,0.000118199845,0.000023495077,0.00004640014,0.00001599746,0.00022874233,0.00054247427,0.0000035157311],"category_scores_gemma":[0.00004824726,0.00007639305,0.0000240508,0.000058976355,0.000057576486,0.0000063307107,0.00030354905,0.00022233359,1.9789599e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018603544,0.000024210378,0.0009845647,0.000014492274,0.000010415342,6.844033e-7,0.000010383189,0.00008053433,0.9857939,0.00009592656,0.0004225318,0.012376318],"study_design_scores_gemma":[0.0008796302,0.00035564665,0.0027183476,0.00014248886,0.000011941745,0.000036481524,0.000044402033,0.017584298,0.95907223,0.00026725675,0.018614238,0.00027305144],"about_ca_topic_score_codex":0.0000019028253,"about_ca_topic_score_gemma":0.000006926744,"teacher_disagreement_score":0.59980875,"about_ca_system_score_codex":0.000004850922,"about_ca_system_score_gemma":0.000019475612,"threshold_uncertainty_score":0.41840586},"labels":[],"label_agreement":null},{"id":"W2152507443","doi":"10.1038/nprot.2007.56","title":"A simple, robust and semi-automated parasite egg isolation protocol","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McMaster University","keywords":"Parasite hosting; Feces; Centrifugation; Digital polymerase chain reaction; Isolation (microbiology); Biology; Chromatography; Protocol (science); Computer science; Microbiology; Chemistry; Polymerase chain reaction; Pathology; Genetics; Medicine","score_opus":0.02175926195478218,"score_gpt":0.3189683710704382,"score_spread":0.297209109115656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152507443","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10970378,0.000009435895,0.0001880941,0.00080891495,0.000028943094,0.88336694,0.000017266975,0.00082871225,0.0050479006],"genre_scores_gemma":[0.30559516,8.6242414e-7,0.00015120883,0.0005750396,0.0002160381,0.6930287,0.00005294398,0.0000018560738,0.00037821065],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990336,0.000031456777,0.00023476587,0.00025917904,0.0002070784,0.00023395538],"domain_scores_gemma":[0.999594,0.0000655005,0.00013899189,0.00004742258,0.000095216245,0.000058910315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003025101,0.00014849578,0.00015138304,0.000019829644,0.00024523516,0.000118579665,0.00011179554,0.00018656818,0.000105594794],"category_scores_gemma":[0.00003292761,0.000058104222,0.000035118468,0.00036784288,0.000033279655,0.0001779665,0.00008564698,0.000183547,0.000014287501],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008175823,0.00036849754,0.6316634,0.00041886512,0.00007974673,0.000026769774,0.00017754624,0.000013688794,0.27878806,0.0024357897,0.0146342525,0.07057585],"study_design_scores_gemma":[0.0004977425,0.0001610617,0.7666852,0.0000578703,0.0000067009482,0.0000035103005,0.00005824129,0.0006167647,0.0026749477,0.000370376,0.22864302,0.00022459982],"about_ca_topic_score_codex":0.000005413292,"about_ca_topic_score_gemma":0.00007257745,"teacher_disagreement_score":0.27611312,"about_ca_system_score_codex":0.000012698209,"about_ca_system_score_gemma":0.0000023585294,"threshold_uncertainty_score":0.23694213},"labels":[],"label_agreement":null},{"id":"W2158442971","doi":"10.1038/nprot.2008.183","title":"Electrical stimulation systems for cardiac tissue engineering","year":2009,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Tissue Engineering and Regenerative Medicine","field":"Medicine","cited_by":536,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Heart, Lung, and Blood Institute; Natural Sciences and Engineering Research Council of Canada; National Institute of Biomedical Imaging and Bioengineering; University of Toronto; Arthritis Foundation","keywords":"Tissue engineering; Pulsatile flow; Biomedical engineering; Stimulation; Cell culture; Cell; Substrate (aquarium); Functional electrical stimulation; Cell biology; Materials science; Nanotechnology; Biophysics; Computer science; Chemistry; Neuroscience; Biology; Medicine; Cardiology; Biochemistry","score_opus":0.012468918852750064,"score_gpt":0.3396462018993281,"score_spread":0.327177283046578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158442971","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.019509668,0.04885668,0.34502795,0.0041059623,0.002588462,0.57694787,0.000045846886,0.001871816,0.0010457474],"genre_scores_gemma":[0.89482737,0.000011399094,0.0150637785,0.00012701337,0.00497858,0.0773458,0.00010625334,0.00006625394,0.0074735302],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99911714,0.0000131072575,0.00019026418,0.00020822497,0.00023211635,0.00023916567],"domain_scores_gemma":[0.9994652,0.00005715527,0.000036018653,0.00018161442,0.00013738217,0.00012259644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001828112,0.00015799636,0.00034862003,0.00011583706,0.000039448543,0.00001833903,0.000050078434,0.00029689842,0.0000038975822],"category_scores_gemma":[0.00025990992,0.000119388445,0.00006625293,0.00021664765,0.0000070541,0.0000353983,0.0000037526258,0.00044869608,0.0000048044644],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070790027,0.00041204874,0.0019569797,0.0016043619,0.00025982517,0.00006891452,0.00026658905,0.032487035,0.81131846,0.04179479,0.0446348,0.064488314],"study_design_scores_gemma":[0.0028037573,0.0026412008,0.012777025,0.0006873932,0.00009023061,0.00004965982,0.000004614514,0.05650936,0.056872584,0.000029718569,0.8672388,0.00029563042],"about_ca_topic_score_codex":0.0000012160843,"about_ca_topic_score_gemma":2.5198212e-8,"teacher_disagreement_score":0.87531775,"about_ca_system_score_codex":0.00008282403,"about_ca_system_score_gemma":0.0000384111,"threshold_uncertainty_score":0.48685196},"labels":[],"label_agreement":null},{"id":"W2181192066","doi":"10.1038/nprot.2015.115","title":"Precision-engineering the Pseudomonas aeruginosa genome with two-step allelic exchange","year":2015,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":609,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; University of Calgary","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Pseudomonas aeruginosa; Genome; Computational biology; Biology; Genetics; Allele; Genome engineering; Genome editing; Gene; Bacteria","score_opus":0.013161378423003266,"score_gpt":0.27128355480912936,"score_spread":0.2581221763861261,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2181192066","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89117974,0.0027897141,0.002030724,0.0018807832,0.00058408757,0.096295364,0.00006274847,0.00016960855,0.0050072228],"genre_scores_gemma":[0.95943975,0.000036327263,0.013176027,0.0012456514,0.002407536,0.02260713,0.0001369477,0.000103816754,0.00084680825],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989505,0.000048746544,0.00015196146,0.00033056896,0.00022382321,0.0002944294],"domain_scores_gemma":[0.99915004,0.000012579387,0.00007656868,0.00047955877,0.00015458891,0.00012666083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002468712,0.00020821774,0.0001553072,0.000028945822,0.000086416585,0.00005893136,0.00026361397,0.0002920126,0.000007504482],"category_scores_gemma":[0.00007673281,0.00012670142,0.000060109276,0.00011666738,0.00004960849,0.0000069303837,0.00014535422,0.00033899932,0.0000131021225],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045802057,0.000045086734,0.0002662759,0.000028910663,0.00005800972,0.000019259374,0.00010339059,0.00017194403,0.9920976,0.00007265228,0.0040965397,0.0025823116],"study_design_scores_gemma":[0.0015055212,0.0004969954,0.0010468893,0.00005408525,0.000010322161,0.0001735565,0.000024073603,0.000104923514,0.117894724,0.000005886996,0.8783803,0.000302747],"about_ca_topic_score_codex":0.000010880481,"about_ca_topic_score_gemma":0.000025376043,"teacher_disagreement_score":0.87428373,"about_ca_system_score_codex":0.000018690773,"about_ca_system_score_gemma":0.00009075225,"threshold_uncertainty_score":0.5166734},"labels":[],"label_agreement":null},{"id":"W2198493885","doi":"10.1038/nprot.2015.107","title":"The isolation and culture of endothelial colony-forming cells from human and rat lungs","year":2015,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Children's Hospital of Eastern Ontario; University of Ottawa; Women and Children’s Health Research Institute; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Vasculogenesis; Progenitor cell; Cell biology; Matrigel; Biology; Endothelial stem cell; CD31; Haematopoiesis; Cell sorting; Stem cell; Immunology; Angiogenesis; Flow cytometry; Cancer research; In vitro","score_opus":0.015844062366081546,"score_gpt":0.3415594570877934,"score_spread":0.32571539472171185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2198493885","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96832365,0.0016463844,0.000042707758,0.000109180444,0.00005418862,0.028286515,0.000058452053,0.000008694464,0.0014702237],"genre_scores_gemma":[0.9932888,0.000016357119,0.00038536976,0.00004590285,0.00017274926,0.00482086,0.00002353832,0.0000111847285,0.0012352212],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993859,0.00005896239,0.00010924184,0.00017427966,0.00014644235,0.0001251585],"domain_scores_gemma":[0.9995613,0.000023476943,0.000047850128,0.00016375609,0.00013279168,0.00007080603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021164941,0.000082272,0.0000869363,0.000013919085,0.00010170552,0.00004615358,0.00009389951,0.0002516549,0.0000019915133],"category_scores_gemma":[0.00010466778,0.000055386517,0.000022974169,0.00004071753,0.00009287356,0.0000055697756,0.00012820831,0.0002208824,9.851252e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020014675,0.0000120070345,0.0014640989,0.000023211627,0.000014107657,9.058128e-7,0.00017916363,2.1437458e-7,0.9928231,0.000046213947,0.0020437322,0.0031930958],"study_design_scores_gemma":[0.0008061871,0.00042852477,0.00038403654,0.000021778951,0.0000054476395,0.00000445182,0.000055091383,0.00003744332,0.80239683,0.00045008867,0.19533548,0.00007464399],"about_ca_topic_score_codex":0.000023311915,"about_ca_topic_score_gemma":0.00011310303,"teacher_disagreement_score":0.19329174,"about_ca_system_score_codex":0.00000814661,"about_ca_system_score_gemma":0.00004803137,"threshold_uncertainty_score":0.22585966},"labels":[],"label_agreement":null},{"id":"W2246559112","doi":"10.1038/nprot.2015.124","title":"Next-generation diagnostics and disease-gene discovery with the Exomiser","year":2015,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":466,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"National Institutes of Health","keywords":"Exome; Sanger sequencing; Computational biology; Exome sequencing; Computer science; Suite; DNA sequencing; Genetics; Biology; Gene; Bioinformatics; Mutation","score_opus":0.026641123014379882,"score_gpt":0.28003151998974857,"score_spread":0.2533903969753687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2246559112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9541719,0.006848396,0.00076300674,0.0025246867,0.000113301605,0.035088193,0.00015096912,0.000018771347,0.0003208032],"genre_scores_gemma":[0.97809494,0.00007412521,0.00031256987,0.0014015984,0.00062678603,0.01879681,0.0002221692,0.000022507795,0.00044847035],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993766,0.00003827722,0.000075768454,0.00024417602,0.00013215767,0.0001330352],"domain_scores_gemma":[0.9993697,0.0000100552315,0.000046655798,0.00028205093,0.00010253038,0.00018899865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009252883,0.00012484484,0.00007346074,0.0000121627345,0.000085046726,0.0001498816,0.000126058,0.00011731276,0.000001418872],"category_scores_gemma":[0.0001621107,0.00007194922,0.0000309414,0.000042368032,0.0000663812,0.000009700381,0.00007842723,0.0001130474,0.0000017467772],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004235006,0.00078866084,0.047424834,0.0002178871,0.00036439757,0.00019225525,0.00029992053,0.0010078081,0.6073498,0.0032418347,0.3275354,0.007342178],"study_design_scores_gemma":[0.0040406766,0.0011896243,0.019866658,0.00008170625,0.00015797003,0.00006983246,0.00017612484,0.0003134058,0.13137108,0.0010097728,0.84081,0.00091311557],"about_ca_topic_score_codex":0.000002321974,"about_ca_topic_score_gemma":0.000016951066,"teacher_disagreement_score":0.51327467,"about_ca_system_score_codex":0.0000071925538,"about_ca_system_score_gemma":0.00020079203,"threshold_uncertainty_score":0.2934004},"labels":[],"label_agreement":null},{"id":"W2259465684","doi":"10.1038/nprot.2016.023","title":"In vitro assay to determine SUMOylation sites on protein substrates","year":2016,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"SUMO protein; Lysine; Computational biology; In vitro; Recombinant DNA; Posttranslational modification; Peptide; Biochemistry; Chemistry; Proteomics; Ubiquitin; Mass spectrometry; Function (biology); Biology; Molecular biology; Cell biology; Chromatography; Enzyme; Gene; Amino acid","score_opus":0.01810598357230491,"score_gpt":0.3040795329602339,"score_spread":0.28597354938792896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2259465684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9390894,0.000038143167,0.00020803555,0.0013863868,0.000030397181,0.057292406,0.00005189348,0.000027805152,0.0018755469],"genre_scores_gemma":[0.9219185,5.9119185e-7,0.0015446765,0.0006313354,0.00025984866,0.07452649,0.000025825724,0.000021951999,0.0010707469],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894655,0.00009906232,0.0001775915,0.00036932805,0.00015317637,0.0002542859],"domain_scores_gemma":[0.9994798,0.000025049538,0.00006042147,0.00028403095,0.00006939657,0.00008132989],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032888856,0.00016379134,0.00012700498,0.000075388336,0.000033121683,0.000025609133,0.00018160247,0.0003688365,0.0000499302],"category_scores_gemma":[0.00028117668,0.00011223692,0.000048937804,0.000114674935,0.000021144213,0.0000072700714,0.000051336672,0.00017935853,0.0000661479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005941852,0.00007090429,0.00082064926,0.000023972752,0.0000045512984,0.000005606096,0.000011480952,8.233474e-7,0.98856425,0.00013005969,0.00054768205,0.009225861],"study_design_scores_gemma":[0.0006950415,0.00046497892,0.0010744251,0.000121433324,9.830562e-7,0.0000027991634,0.0000018100692,0.0000028214558,0.949181,0.00040999116,0.0478681,0.00017659577],"about_ca_topic_score_codex":0.0000028231054,"about_ca_topic_score_gemma":0.00002505315,"teacher_disagreement_score":0.047320418,"about_ca_system_score_codex":0.000025266438,"about_ca_system_score_gemma":0.000045132932,"threshold_uncertainty_score":0.45768887},"labels":[],"label_agreement":null},{"id":"W2269299589","doi":"10.1038/nprot.2016.029","title":"Procedures for the reconstruction, primary culture and experimental use of rainbow trout gill epithelia","year":2016,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Physiological and biochemical adaptations","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University; University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; National Centre for the Replacement, Refinement and Reduction of Animals in Research; Natural Environment Research Council; Sight Research UK","keywords":"Rainbow trout; Epithelium; Biology; Gill; Cell biology; Cell culture; Bioaccumulation; Anatomy; Fish <Actinopterygii>; Fishery; Ecology","score_opus":0.020235554546061227,"score_gpt":0.2798342758828345,"score_spread":0.25959872133677325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2269299589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8284874,0.00041461192,0.0008454542,0.004755648,0.00012078996,0.16315277,0.00038817,0.00013441974,0.0017007531],"genre_scores_gemma":[0.94580495,0.000007887014,0.0071552363,0.000645407,0.00006743161,0.04513688,0.0000034157329,0.00000675337,0.0011720305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944806,0.000017206932,0.000120292054,0.00019305134,0.00010972992,0.00011167301],"domain_scores_gemma":[0.9996425,0.00012757335,0.000070349226,0.000104109,0.000016465005,0.00003902527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053798954,0.00008724616,0.00009489443,0.0000052267173,0.000096452815,0.000012449465,0.000119670556,0.0001307827,0.00011603099],"category_scores_gemma":[0.00016109746,0.000034191715,0.00004820089,0.00005936656,0.00029992772,0.00014220012,0.00007190248,0.00009289125,0.0000039266815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001650356,0.000055665267,0.0014486999,0.000014969278,0.0000067215965,6.285418e-8,0.00004649502,9.978621e-7,0.9855072,0.00020260033,0.0035538957,0.008997679],"study_design_scores_gemma":[0.0009184328,0.0003024276,0.05694635,0.00010616513,0.000009462843,0.000011111826,0.00003732768,0.000019894245,0.8528365,0.0067757447,0.08187009,0.0001664889],"about_ca_topic_score_codex":0.000004363971,"about_ca_topic_score_gemma":0.0000026263344,"teacher_disagreement_score":0.13267067,"about_ca_system_score_codex":0.00002907557,"about_ca_system_score_gemma":0.000007351082,"threshold_uncertainty_score":0.13942976},"labels":[],"label_agreement":null},{"id":"W2339164385","doi":"10.1038/nprot.2016.050","title":"Quantification of cancer cell extravasation in vivo","year":2016,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research","keywords":"Extravasation; Invadopodia; Cancer cell; Metastasis; Cancer; In vivo; Cell; Chorioallantoic membrane; Cancer research; Biology; Angiogenesis; Cell biology; Pathology; Medicine","score_opus":0.008716125271749593,"score_gpt":0.3141243810902711,"score_spread":0.3054082558185215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2339164385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91576624,0.0043637613,0.0021043022,0.001114288,0.00031259938,0.063366644,0.00009045669,0.000025009764,0.0128567275],"genre_scores_gemma":[0.98283005,0.00019777821,0.00009345752,0.0000464351,0.00006675211,0.015548969,0.000004028469,0.000007112106,0.0012054311],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99955577,0.00002117448,0.00012359198,0.00014696711,0.00007371203,0.0000787607],"domain_scores_gemma":[0.99971086,0.0000041517856,0.000079581405,0.00013172699,0.000056426983,0.000017230665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007506102,0.000055096825,0.000059437887,0.000017644405,0.000009301529,0.0000026866485,0.00007972882,0.0002748381,0.000041232146],"category_scores_gemma":[0.000014206197,0.00003388013,0.000029471821,0.000054226137,0.000024159006,0.0000031130623,0.0000110193005,0.00006539734,0.0000014882238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010176962,0.000026405261,0.0042410214,0.00003533899,0.000005764348,1.8164114e-7,0.000009314707,0.000018286408,0.9874396,0.000094174655,0.0008295244,0.0071986346],"study_design_scores_gemma":[0.000512494,0.00006513086,0.0026322005,0.000106295076,0.000002196637,3.0415478e-7,0.0000039196475,0.000004010894,0.9528081,0.000067139124,0.043741737,0.00005646731],"about_ca_topic_score_codex":0.00004699086,"about_ca_topic_score_gemma":0.00013579642,"teacher_disagreement_score":0.06706383,"about_ca_system_score_codex":0.000022181483,"about_ca_system_score_gemma":0.00005583745,"threshold_uncertainty_score":0.21198031},"labels":[],"label_agreement":null},{"id":"W2409887094","doi":"10.1038/nprot.2016.070","title":"A method for detergent-free isolation of membrane proteins in their local lipid environment","year":2016,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":389,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Wellcome Trust","keywords":"Membrane protein; Biochemistry; Membrane; Circular dichroism; Ultracentrifuge; Protein purification; Chemistry; Peripheral membrane protein; Nanodisc; Integral membrane protein; Chromatography; Biology","score_opus":0.010682774772978913,"score_gpt":0.29576990319605845,"score_spread":0.28508712842307954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409887094","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1868544,0.00012302838,0.5977121,0.0013443013,0.00023282859,0.21291006,0.00045855544,0.000036934423,0.0003277805],"genre_scores_gemma":[0.80204076,0.000011508251,0.070961565,0.00019820865,0.00053360144,0.12573977,0.00005439194,0.000049473103,0.00041070388],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989716,0.000071934155,0.00027074397,0.00034236314,0.00013017656,0.00021322597],"domain_scores_gemma":[0.9992718,0.000024787736,0.00012450093,0.00048390598,0.000046717953,0.00004829921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027068472,0.0001669901,0.00020025822,0.000049392256,0.000023210054,0.0000053361773,0.00027580763,0.00044327523,0.000034608558],"category_scores_gemma":[0.000076306016,0.000102717524,0.000120341625,0.000050946972,0.000047306366,0.0000063962543,0.000098330405,0.00012159437,0.0000011532803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005126123,0.00007948336,0.00061507686,0.000089389156,0.000015561327,3.2235377e-7,0.00002174182,0.0000074208906,0.96222556,0.000072917384,0.00010832235,0.036251605],"study_design_scores_gemma":[0.0022288978,0.00050990115,0.00077428034,0.00007090368,0.0000099187755,0.0000040827704,0.0000073227493,0.00002164492,0.93774635,0.00020268926,0.05828149,0.00014253713],"about_ca_topic_score_codex":0.0000042623483,"about_ca_topic_score_gemma":0.000033519384,"teacher_disagreement_score":0.6151864,"about_ca_system_score_codex":0.000024195502,"about_ca_system_score_gemma":0.000052176038,"threshold_uncertainty_score":0.4188699},"labels":[],"label_agreement":null},{"id":"W2430232674","doi":"10.1038/nprot.2016.071","title":"Electrochemical detection of nucleic acids, proteins, small molecules and cells using a DNA-nanostructure-based universal biosensing platform","year":2016,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":389,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kellogg's (Canada)","funders":"","keywords":"Biosensor; Nucleic acid; DNA; Nanostructure; Nanotechnology; Computational biology; Small molecule; DNA nanotechnology; Chemistry; Biophysics; Biology; Biochemistry; Materials science","score_opus":0.008101621633010524,"score_gpt":0.25664303684430145,"score_spread":0.24854141521129092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2430232674","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9459139,0.00006610052,0.04449542,0.000074679985,0.000018252562,0.009327201,0.000020514313,0.000057059675,0.000026882257],"genre_scores_gemma":[0.9544568,0.0000068949475,0.045020282,0.00009157038,0.00008040728,0.0002933822,0.000010091722,0.000026552316,0.000014034241],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989276,0.000042650645,0.00021836882,0.000417398,0.00014320303,0.00025078317],"domain_scores_gemma":[0.99926823,0.000014119177,0.00020164257,0.0002835959,0.00016408114,0.00006830716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000106758154,0.00022309378,0.00021797366,0.00009922666,0.00007587454,0.000018524466,0.000116907664,0.0006056385,5.071167e-7],"category_scores_gemma":[0.00008469402,0.00015620184,0.00010471992,0.00015743583,0.00017304963,0.000007979218,0.00006736006,0.00019742726,1.6983047e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004352565,0.000027846785,0.00007605493,0.00004474767,0.00003229371,0.0000024307667,0.0000033205138,7.3821326e-7,0.9947489,0.00001567818,0.000005269947,0.0046074577],"study_design_scores_gemma":[0.00070121227,0.00037858303,0.000052333347,0.0001801567,0.000029970599,0.000021381098,0.0000064656087,0.00013022844,0.9966201,0.0001572614,0.0014919932,0.00023027834],"about_ca_topic_score_codex":0.0000035411201,"about_ca_topic_score_gemma":0.000016105636,"teacher_disagreement_score":0.009033819,"about_ca_system_score_codex":0.000043230415,"about_ca_system_score_gemma":0.000078020756,"threshold_uncertainty_score":0.6369726},"labels":[],"label_agreement":null},{"id":"W2522420690","doi":"10.1038/nprot.2016.125","title":"Photo-induced iodination of aryl halides under very mild conditions","year":2016,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Radical Photochemical Reactions","field":"Chemistry","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre in Green Chemistry and Catalysis","funders":"","keywords":"Aryl; Halogenation; Chemistry; Catalysis; Transition metal; Organic chemistry; Iodide; Combinatorial chemistry; Heteroatom; Alkyl","score_opus":0.028328508844486403,"score_gpt":0.3464821464513892,"score_spread":0.3181536376069028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2522420690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86643356,0.000047673137,0.0003592482,0.0032110838,0.00016562361,0.05446977,0.0005417426,0.00050978427,0.0742615],"genre_scores_gemma":[0.9318404,0.0000013454619,0.00017181505,0.00019072539,0.00012792072,0.06673562,0.000029406037,0.000026364416,0.0008764062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986877,0.000010877658,0.0003366678,0.0003155672,0.0004052035,0.00024400064],"domain_scores_gemma":[0.99861795,0.00041622893,0.00019318343,0.00044611577,0.00019174298,0.00013478407],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010099903,0.00017788725,0.00022742235,0.00007245039,0.00007652085,0.000021342204,0.00027500791,0.00063550216,0.0021336544],"category_scores_gemma":[0.0007071131,0.00012807726,0.00014654783,0.00019031749,0.00013002302,0.00019088137,0.000043663826,0.0005558281,0.000059003316],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005813081,0.00018478946,0.00028153043,0.00009325527,0.000037584367,0.0000017097162,0.000009937932,5.2685664e-7,0.9915322,0.003143015,0.0040473235,0.00061001774],"study_design_scores_gemma":[0.0010307604,0.000027188536,0.0008409723,0.00046512857,0.000016578648,0.0000057760285,0.000012696696,0.000007630138,0.9732506,0.012835034,0.011338908,0.00016870687],"about_ca_topic_score_codex":0.000017442144,"about_ca_topic_score_gemma":0.0000049241307,"teacher_disagreement_score":0.0733851,"about_ca_system_score_codex":0.00018493118,"about_ca_system_score_gemma":0.00010762143,"threshold_uncertainty_score":0.9987785},"labels":[],"label_agreement":null},{"id":"W2589116452","doi":"10.1038/nprot.2016.186","title":"Detecting natural adaptation of the Streptococcus thermophilus CRISPR-Cas systems in research and classroom settings","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"CRISPR; Streptococcus thermophilus; Adaptation (eye); Computational biology; Biology; Synthetic biology; Systems biology; Computer science; Microbiology; Genetics; Bacteria; Neuroscience; Gene","score_opus":0.03816342516754459,"score_gpt":0.4176131860353687,"score_spread":0.3794497608678241,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2589116452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9685898,0.0014854311,0.00032307726,0.00025797662,0.00017776752,0.028768605,0.0000100525895,0.000008306399,0.00037900792],"genre_scores_gemma":[0.99192566,0.0000055386477,0.00015044064,0.000011487768,0.00014259007,0.0076431446,0.0000021760102,0.000014905559,0.00010406298],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907637,0.00007496773,0.00017987256,0.00025484228,0.0002064386,0.00020750804],"domain_scores_gemma":[0.999138,0.00002998783,0.00012176184,0.00052447326,0.00015723423,0.000028567356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006192194,0.00010223085,0.00011601294,0.0000439881,0.0002044478,0.00008067159,0.0003503096,0.0002710157,6.53811e-7],"category_scores_gemma":[0.00054263236,0.00007474051,0.00003549537,0.00006571917,0.00009429763,0.0000061354294,0.0002287249,0.00058282865,2.9107585e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012547227,0.000035867102,0.0387806,0.00033145605,0.000025065612,0.0000032278028,0.00031822984,0.00050448923,0.9455474,0.00016915113,0.00015726541,0.014001799],"study_design_scores_gemma":[0.0011725011,0.0002749865,0.15923631,0.0005172139,0.000005562154,0.00001553883,0.0005706246,0.003578291,0.825879,0.00021198032,0.008329402,0.00020863548],"about_ca_topic_score_codex":0.00007581047,"about_ca_topic_score_gemma":0.00026564335,"teacher_disagreement_score":0.12045571,"about_ca_system_score_codex":0.000016742808,"about_ca_system_score_gemma":0.000043853597,"threshold_uncertainty_score":0.30478296},"labels":[],"label_agreement":null},{"id":"W2591752194","doi":"10.1038/nprot.2017.001","title":"Decerebrate mouse model for studies of the spinal cord circuits","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neuroscience of respiration and sleep","field":"Neuroscience","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Neurological Disorders and Stroke; Lundbeckfonden","keywords":"Decerebration; Spinal cord; Neuroscience; Decerebrate State; Medicine; Anesthesia; Biology; Central nervous system; Electric stimulation","score_opus":0.19025203205545735,"score_gpt":0.4493164607861604,"score_spread":0.259064428730703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2591752194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.556275,0.00008699488,0.007031191,0.009488378,0.0017346821,0.4200224,0.00020500565,0.00024097358,0.0049153795],"genre_scores_gemma":[0.9602787,0.0000022475494,0.00019056605,0.0020493625,0.000048041325,0.035364766,4.76783e-8,0.00001218788,0.002054101],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988466,0.00004756392,0.00018980779,0.00034073566,0.0003675249,0.00020776202],"domain_scores_gemma":[0.99868715,0.00005250181,0.00034560016,0.0007167688,0.00015288363,0.00004510398],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002477887,0.000118916585,0.00016721123,0.000035065274,0.0008337499,0.00014700672,0.001158816,0.00010365098,0.0000017373529],"category_scores_gemma":[0.0041887085,0.000073713905,0.00010304268,0.000076732824,0.00040182364,0.00028729177,0.00018052565,0.00028009366,0.0000029037176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021920484,0.00007324592,0.00029663194,0.000118384785,0.0000027608596,0.0000010827866,0.000058034635,0.00011381798,0.959016,0.028768705,0.0007306298,0.01060146],"study_design_scores_gemma":[0.0006430344,0.000339139,0.00030124668,0.000077293684,0.000004168288,0.0000022773413,0.000006379687,0.008555052,0.98114395,0.0039540967,0.0048691,0.0001042563],"about_ca_topic_score_codex":4.7422253e-7,"about_ca_topic_score_gemma":0.000006849096,"teacher_disagreement_score":0.40400368,"about_ca_system_score_codex":0.000023076895,"about_ca_system_score_gemma":0.000087696055,"threshold_uncertainty_score":0.6412614},"labels":[],"label_agreement":null},{"id":"W2592890495","doi":"10.1038/nprot.2017.006","title":"Simple multiplexed PCR-based barcoding of DNA for ultrasensitive mutation detection by next-generation sequencing","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":137,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Cancer Institute","keywords":"Computational biology; Amplicon; Biology; DNA sequencing; DNA; DNA barcoding; Polymerase chain reaction; DNA microarray; Genetics; Gene; Evolutionary biology","score_opus":0.04159425656903945,"score_gpt":0.3265408074719733,"score_spread":0.28494655090293386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592890495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8895283,0.00008876322,0.06760304,0.000113029906,0.00017984559,0.041885648,0.00046785182,0.000016518103,0.00011700817],"genre_scores_gemma":[0.9837265,0.0000024372289,0.0020493807,0.0001587354,0.00032137928,0.013245425,0.00046362905,0.000019448089,0.000013075045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993268,0.000023449134,0.00017206905,0.00025272896,0.00008797686,0.00013694564],"domain_scores_gemma":[0.9991307,0.000041097668,0.00025826078,0.0002803088,0.00025086768,0.00003874382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017424088,0.000110974965,0.00011628879,0.000026306674,0.0002413876,0.00008018913,0.0001098414,0.00026718155,0.0000017873504],"category_scores_gemma":[0.0008667165,0.00011582684,0.00007615048,0.000021787606,0.000039863153,0.000010423429,0.000021109332,0.00009780635,3.3486523e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017664011,0.000021581107,0.0001996044,0.00004771049,0.000014630813,5.123973e-7,0.000015903897,0.00039740436,0.991839,0.00002494882,0.00039715934,0.0068648867],"study_design_scores_gemma":[0.0012752784,0.00033258303,0.0002466693,0.000024038036,0.00001322216,0.0000013362235,0.000020014768,0.01040029,0.983636,0.00007781659,0.0038418313,0.00013090546],"about_ca_topic_score_codex":0.000051449184,"about_ca_topic_score_gemma":0.00025408558,"teacher_disagreement_score":0.09419819,"about_ca_system_score_codex":0.00005149688,"about_ca_system_score_gemma":0.00010012066,"threshold_uncertainty_score":0.47232816},"labels":[],"label_agreement":null},{"id":"W2593449485","doi":"10.1038/nprot.2017.002","title":"Engineering a humanized bone organ model in mice to study bone metastases","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Mesenchymal stem cell research","field":"Medicine","cited_by":124,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Humanized mouse; Bone metastasis; Cancer cell; Tissue engineering; Metastasis; In vivo; Cancer; Cancer research; Stem cell; Haematopoiesis; Extracellular matrix; Medicine; Biology; Pathology; Biomedical engineering; Cell biology; Internal medicine; Biotechnology","score_opus":0.057978865246185694,"score_gpt":0.4207831458887368,"score_spread":0.3628042806425511,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2593449485","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67486763,0.00011544374,0.00026006153,0.0011300831,0.000044956043,0.3207826,0.000014129214,0.00012354401,0.0026615555],"genre_scores_gemma":[0.87125057,7.109218e-7,0.0064970083,0.00014365606,0.0001293167,0.120493,0.0000038085552,0.000051861964,0.0014300386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977558,0.000066341316,0.00036936978,0.0005069467,0.00080465403,0.0004968459],"domain_scores_gemma":[0.9983035,0.00007074881,0.00010092811,0.0010171465,0.00021012622,0.00029755663],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012739982,0.0002397627,0.0005947009,0.00031102714,0.00016601945,0.00014280708,0.00042782156,0.00022594356,0.00015986456],"category_scores_gemma":[0.0022186046,0.00019958163,0.000070517184,0.00025087697,0.000023776573,0.00013915377,0.00035771925,0.0012116,0.00008396785],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005696268,0.006517394,0.026245156,0.0018958792,0.00035172194,0.00452936,0.00287806,0.00059826125,0.9282586,0.00093587086,0.004288641,0.017804807],"study_design_scores_gemma":[0.08768321,0.011601888,0.18544035,0.005691754,0.00042124517,0.00037690863,0.00092412415,0.049030624,0.61470073,0.0005711978,0.040489532,0.003068445],"about_ca_topic_score_codex":0.00008164415,"about_ca_topic_score_gemma":0.00011172305,"teacher_disagreement_score":0.31355786,"about_ca_system_score_codex":0.00014359067,"about_ca_system_score_gemma":0.0001439962,"threshold_uncertainty_score":0.81387025},"labels":[],"label_agreement":null},{"id":"W2608476429","doi":"10.1038/nprot.2017.025","title":"Tissue-engineered 3D human lymphatic microvascular network for in vitro studies of lymphangiogenesis","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Lymphatic System and Diseases","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Lymphatic system; Lymphatic Endothelium; Lymphangiogenesis; Cell biology; Extracellular matrix; Tissue engineering; Biology; Connective tissue; Human skin; Pathology; Immunology; Medicine; Cancer","score_opus":0.043767343727272,"score_gpt":0.401318174778987,"score_spread":0.35755083105171503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2608476429","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48684323,0.03715171,0.0008043554,0.0008398842,0.0007020941,0.47191608,0.00012214805,0.0002250803,0.001395417],"genre_scores_gemma":[0.8627073,0.000010050973,0.0060383524,0.00016873643,0.0005883405,0.1299865,0.000033186483,0.00004556644,0.0004219534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985085,0.000049319293,0.00047224198,0.00031798848,0.00030445115,0.00034750393],"domain_scores_gemma":[0.9983048,0.00013873827,0.0002974036,0.0008702696,0.00028309395,0.000105695726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004900494,0.00023308632,0.000839803,0.0001183831,0.00020034086,0.000035879533,0.00028532677,0.00026629472,0.000011155847],"category_scores_gemma":[0.0008046122,0.00018455362,0.00024881575,0.000116537354,0.000100174715,0.00009386528,0.00007413592,0.000018341758,0.00000409074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004742967,0.0019515333,0.10159486,0.029682385,0.0034459087,0.00022581097,0.0011895207,0.00010431766,0.7962783,0.0014594023,0.016100813,0.043224175],"study_design_scores_gemma":[0.025860874,0.0006981117,0.06834226,0.006397716,0.00084109046,0.00005080134,0.00020485108,0.00012526572,0.88108814,0.0014989983,0.014261439,0.00063046574],"about_ca_topic_score_codex":0.000027528931,"about_ca_topic_score_gemma":0.000009685801,"teacher_disagreement_score":0.3758641,"about_ca_system_score_codex":0.00013165855,"about_ca_system_score_gemma":0.00015022435,"threshold_uncertainty_score":0.75258785},"labels":[],"label_agreement":null},{"id":"W2613925306","doi":"10.1038/nprot.2017.029","title":"Single-cell template strand sequencing by Strand-seq enables the characterization of individual homologs","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Biology; Sequencing by hybridization; Genetics; DNA nanoball sequencing; DNA; Single molecule real time sequencing; Genome; Genomic library; DNA sequencing; Homologous recombination; Computational biology; Gene; DNA sequencer; Base sequence","score_opus":0.018897116291010985,"score_gpt":0.2809410640258254,"score_spread":0.26204394773481443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2613925306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97951734,0.00020147675,0.00038286124,0.00031868322,0.00011415208,0.017702278,0.00068473286,0.000008089878,0.0010703988],"genre_scores_gemma":[0.99588144,0.000040398507,0.0001697015,0.00022602548,0.00019806501,0.002914857,0.0002912419,0.000019699592,0.00025858096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920756,0.00003149077,0.00019556594,0.00023524583,0.00014990396,0.00018026076],"domain_scores_gemma":[0.9990538,0.00001935286,0.0002963889,0.00049151736,0.000095911484,0.000043074207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022804027,0.00013681476,0.00014156794,0.000017170309,0.00022485568,0.00015567592,0.0004941635,0.0003398688,0.000010556856],"category_scores_gemma":[0.00009985194,0.00009459724,0.0000618955,0.000024872135,0.000118297976,0.000008793951,0.00011659171,0.00021794162,9.90982e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009373153,0.00005257195,0.0012733283,0.000055574543,0.000027303233,0.0000015945087,0.0000671123,0.000004663235,0.99473125,0.00003829988,0.00096953276,0.0026850672],"study_design_scores_gemma":[0.0009189534,0.00029173394,0.002645365,0.000043711345,0.00001988883,0.000005531775,0.000018971146,0.0000048071824,0.93989766,0.00012674993,0.055889674,0.00013695731],"about_ca_topic_score_codex":0.000017242302,"about_ca_topic_score_gemma":0.000024434876,"teacher_disagreement_score":0.05492014,"about_ca_system_score_codex":0.000015164953,"about_ca_system_score_gemma":0.00012298887,"threshold_uncertainty_score":0.38575637},"labels":[],"label_agreement":null},{"id":"W2617661037","doi":"10.1038/nprot.2017.035","title":"Solid-phase synthesis, cyclization, and site-specific functionalization of aziridine-containing tetrapeptides","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Synthesis and Catalytic Reactions","field":"Chemistry","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Aziridine; Surface modification; Solid-phase synthesis; Combinatorial chemistry; Computational biology; Chemistry; Stereochemistry; Biology; Biochemistry; Peptide; Organic chemistry","score_opus":0.02946921479155347,"score_gpt":0.3799700813485722,"score_spread":0.35050086655701873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2617661037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78836626,0.0014749499,0.005338969,0.0017268287,0.0004714521,0.050775617,0.0005758661,0.0005987253,0.15067133],"genre_scores_gemma":[0.9824389,0.000030986987,0.00032745715,0.000025776097,0.00026253634,0.016385492,0.00004145511,0.000027918748,0.00045942573],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989288,0.000014494745,0.00032311588,0.00030919389,0.0002673039,0.00015712551],"domain_scores_gemma":[0.9984645,0.00021476709,0.00043017993,0.00060397905,0.00021641495,0.00007014509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021317154,0.00016543797,0.00025105572,0.0000655659,0.00047633052,0.00017599603,0.00022366682,0.00030919653,0.000620855],"category_scores_gemma":[0.0009608602,0.00014937478,0.000078046505,0.000054190074,0.000121885634,0.00024509753,0.000052960804,0.00024047597,0.000009099298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046613347,0.0005064457,0.040392213,0.0005560033,0.00011696869,0.000006007907,0.00024587713,0.00003227588,0.91225624,0.0072025284,0.0036564788,0.034562822],"study_design_scores_gemma":[0.0013404179,0.000050429262,0.008274722,0.0006905378,0.000057964342,0.000023058228,0.00014118558,0.00031612522,0.8650793,0.0009914261,0.12272324,0.00031162353],"about_ca_topic_score_codex":0.0000097052825,"about_ca_topic_score_gemma":0.000010364933,"teacher_disagreement_score":0.1940727,"about_ca_system_score_codex":0.00003708486,"about_ca_system_score_gemma":0.000048797498,"threshold_uncertainty_score":0.6797927},"labels":[],"label_agreement":null},{"id":"W2751258666","doi":"10.1038/nprot.2017.089","title":"Use of a neonatal rat system as a bioincubator to generate adult-like mature cardiomyocytes from human and mouse pluripotent stem cells","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nexen (Canada)","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Heart, Lung, and Blood Institute","keywords":"Induced pluripotent stem cell; Embryonic stem cell; Biology; Cell biology; Stem cell; Progenitor cell; Directed differentiation; Myocyte; Cellular differentiation; Cell type; In vivo; Cell; Neuroscience; Gene; Genetics","score_opus":0.019694936486169573,"score_gpt":0.3001359543269539,"score_spread":0.28044101784078435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2751258666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9591097,0.00043869624,0.00013838171,0.00014890614,0.00016250396,0.039219018,0.0006532332,0.000035633482,0.000093910494],"genre_scores_gemma":[0.97060907,0.000025792042,0.0024930134,0.00022946336,0.0004233615,0.022385087,0.000119310775,0.000087524975,0.003627388],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99762183,0.00016524295,0.00038610355,0.00085300725,0.00052600424,0.00044780775],"domain_scores_gemma":[0.99733984,0.00002023965,0.00030627023,0.0015509683,0.0004624158,0.00032027598],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024807904,0.00037017686,0.00046803005,0.0001011322,0.0003492719,0.00037705785,0.00078540616,0.0007848968,0.0000068108657],"category_scores_gemma":[0.00007461181,0.0003144721,0.00017304173,0.000069032554,0.00013835552,0.000026754808,0.0008429602,0.00047871086,0.000020729165],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005979734,0.000044607503,0.0012349657,0.00035709955,0.00015780097,0.000062120045,0.00005483789,0.000018225672,0.9929421,0.00007079673,0.0032453027,0.0012141457],"study_design_scores_gemma":[0.0011624494,0.00038383258,0.00057411887,0.0002798998,0.000025549003,0.000022555916,0.00005404124,0.000045733912,0.94861746,0.000005803399,0.04849727,0.00033130636],"about_ca_topic_score_codex":0.0003085331,"about_ca_topic_score_gemma":0.000091323825,"teacher_disagreement_score":0.045251966,"about_ca_system_score_codex":0.000049824997,"about_ca_system_score_gemma":0.0001260246,"threshold_uncertainty_score":0.99993074},"labels":[],"label_agreement":null},{"id":"W2752406059","doi":"10.1038/nprot.2017.079","title":"Multiparametric characterization of rare HIV-infected cells using an RNA-flow FISH technique","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":64,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute","keywords":"In situ hybridization; RNA; Messenger RNA; Biology; Flow cytometry; Group-specific antigen; Virology; Molecular biology; Translation (biology); Viral replication; Antibody; Staining; Virus; Viral protein; Gene; Immunology; Biochemistry","score_opus":0.02695583191318295,"score_gpt":0.3414314037994079,"score_spread":0.31447557188622494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2752406059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7817007,0.00006174724,0.003896129,0.0001662361,0.00025342937,0.21047083,0.0020177336,0.00022111606,0.0012121004],"genre_scores_gemma":[0.95688236,0.0000037909824,0.0022705258,0.000034387805,0.000041644787,0.03954075,0.0006753325,0.000024145456,0.0005270969],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892586,0.00019637919,0.00021839268,0.00028757236,0.00006670517,0.00030505864],"domain_scores_gemma":[0.9988174,0.00004292161,0.00029398387,0.00058640365,0.0002188279,0.000040468196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021126607,0.00016762024,0.00027521208,0.00019559184,0.00034271926,0.00005686898,0.00039993794,0.0006994216,0.00021935944],"category_scores_gemma":[0.00021414069,0.00013713414,0.00007418529,0.00014218439,0.00013979504,0.00025232628,0.00010211092,0.0006117671,0.000080131365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021766688,0.00043375703,0.0053769476,0.00006567176,0.00006252646,0.000014204418,0.00004245129,0.0000017310022,0.98636067,0.000011912015,0.00017107892,0.007241392],"study_design_scores_gemma":[0.00170134,0.00031704348,0.032946404,0.00012910774,0.00001411123,0.00001950132,0.0000026879347,0.000045478188,0.9537272,0.000014802763,0.010951204,0.00013112128],"about_ca_topic_score_codex":0.00003170893,"about_ca_topic_score_gemma":0.000009091847,"teacher_disagreement_score":0.17518166,"about_ca_system_score_codex":0.00005471501,"about_ca_system_score_gemma":0.000103178834,"threshold_uncertainty_score":0.5592168},"labels":[],"label_agreement":null},{"id":"W2752490028","doi":"10.1038/nprot.2017.081","title":"Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Atomic and Subatomic Physics Research","field":"Physics and Astronomy","cited_by":183,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre","funders":"National Institute of Biomedical Imaging and Bioengineering","keywords":"Biophysics; Vesicle; Dynamic light scattering; Molecular imaging; Nanoparticle; Chemistry; In vivo; Nanotechnology; Materials science; Biochemistry; Biology; Membrane","score_opus":0.029516051905512142,"score_gpt":0.41565054434517507,"score_spread":0.3861344924396629,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2752490028","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8690643,0.000025117755,0.012788979,0.000110893954,0.000083343824,0.11614692,0.0008153747,0.0000177446,0.00094736635],"genre_scores_gemma":[0.9613267,8.036296e-7,0.0009753136,0.000024848134,0.00018778178,0.037075173,0.0000565804,0.000018295723,0.0003345022],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99918765,0.000020996817,0.00017818499,0.00025352582,0.00013676914,0.00022287427],"domain_scores_gemma":[0.9989796,0.000197837,0.00021932315,0.00035316581,0.00018289633,0.00006717678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001518118,0.00013024411,0.0002152701,0.000026443522,0.00032933892,0.00019754037,0.00025011113,0.00011795622,0.00002207505],"category_scores_gemma":[0.00008988825,0.00011109559,0.00010770757,0.000023892064,0.0001070919,0.00029243884,0.000046761466,0.0001461877,0.0000015309042],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046948222,0.00048246706,0.20851617,0.0005673773,0.0008173558,8.916486e-7,0.0012305703,0.000015603358,0.35924822,0.30583254,0.023748398,0.09484559],"study_design_scores_gemma":[0.0061794193,0.000304104,0.014424627,0.00012378201,0.000056989807,0.0000017752016,0.00010436226,0.00427089,0.75188214,0.18298423,0.039288215,0.0003794803],"about_ca_topic_score_codex":0.00005341655,"about_ca_topic_score_gemma":0.0000041739613,"teacher_disagreement_score":0.3926339,"about_ca_system_score_codex":0.00001803414,"about_ca_system_score_gemma":0.00013683246,"threshold_uncertainty_score":0.45303467},"labels":[],"label_agreement":null},{"id":"W2765094222","doi":"10.1038/nprot.2017.105","title":"Identification of cross talk between SUMOylation and ubiquitylation using a sequential peptide immunopurification approach","year":2017,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"SUMO protein; Tandem affinity purification; Ubiquitin; Immunoprecipitation; SUMO enzymes; Biochemistry; Chemistry; Lysine; Proteome; Tandem mass spectrometry; Proteomics; Biology; Cell biology; Computational biology; Affinity chromatography; Mass spectrometry; Amino acid; Gene; Chromatography","score_opus":0.043603053940044774,"score_gpt":0.3773831240224463,"score_spread":0.3337800700824015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765094222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9713438,0.00009446709,0.010984655,0.000025459736,0.000034327448,0.01684068,0.00005590017,0.000012626529,0.0006080861],"genre_scores_gemma":[0.9924451,0.0000041290577,0.0025563606,0.000008266539,0.00027625563,0.004348495,0.00022832138,0.00001767606,0.00011538228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989511,0.00007692036,0.00032710246,0.0003294293,0.0001791419,0.00013634858],"domain_scores_gemma":[0.99855345,0.0000066689895,0.0006033326,0.00055615214,0.0002413122,0.000039066887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061321346,0.00012672463,0.00014018502,0.000046358986,0.0003371788,0.00019973084,0.00025231982,0.0004335172,0.0000027311576],"category_scores_gemma":[0.00018357257,0.00012914829,0.000055906334,0.00003961317,0.0001521247,0.00004062574,0.00011426932,0.00019240461,9.092343e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008698562,0.000029644369,0.04146127,0.00014147196,0.00002279847,1.4154513e-7,0.00005163879,0.000024582683,0.95530117,0.0002817126,0.0000068704544,0.0025917436],"study_design_scores_gemma":[0.0005249837,0.00006851143,0.11599807,0.000038457885,0.000016845739,0.0000052676387,0.000010502239,0.0004763314,0.8812077,0.0003771311,0.0011409555,0.00013526392],"about_ca_topic_score_codex":0.000023361403,"about_ca_topic_score_gemma":0.0000028584634,"teacher_disagreement_score":0.0745368,"about_ca_system_score_codex":0.000017650551,"about_ca_system_score_gemma":0.00005581533,"threshold_uncertainty_score":0.52665144},"labels":[],"label_agreement":null},{"id":"W2780737922","doi":"10.1038/s41596-021-00588-0","title":"Generic acquisition protocol for quantitative MRI of the spinal cord","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Neuroimaging Techniques and Applications","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Philips (Canada); McGill University; Centre Hospitalier Universitaire de Sherbrooke; International Collaboration On Repair Discoveries; University of British Columbia; Université de Montréal; Université de Sherbrooke; Centre Hospitalier Universitaire Sainte-Justine; Polytechnique Montréal; Montreal Neurological Institute and Hospital; Mila - Quebec Artificial Intelligence Institute","funders":"National Institute of Neurological Disorders and Stroke; Staatssekretariat für Bildung, Forschung und Innovation; Economic and Social Research Council; Engineering and Physical Sciences Research Council; Natural Sciences and Engineering Research Council of Canada; National Institute of Biomedical Imaging and Bioengineering; Canadian Institutes of Health Research; CRIS Cancer Foundation; Regione Puglia; University College London Hospitals NHS Foundation Trust; Ministero dell’Istruzione, dell’Università e della Ricerca; Ministero della Salute; Concordia University; Agentura Pro Zdravotnický Výzkum České Republiky; National Institutes of Health; Rosetrees Trust; European Commission; Multiple Sclerosis Society; Bundesministerium für Bildung und Forschung; National Imaging Facility; National Institute for Health and Care Research; University of Pennsylvania; SpinalCure Australia; University of Minnesota; National Science Foundation; Compute Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Polytechnique Montréal; Wellcome Trust; Institut de Valorisation des Données; AstraZeneca; National Center for Advancing Translational Sciences; Craig H. Neilsen Foundation; McGill University; Canada First Research Excellence Fund; Max-Planck-Gesellschaft","keywords":"Protocol (science); Magnetic resonance imaging; Computer science; Diffusion MRI; Medicine; Spinal cord; Neuroimaging; Medical physics; Nuclear medicine; Radiology; Pathology","score_opus":0.14861896995219095,"score_gpt":0.51340233755156,"score_spread":0.364783367599369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2780737922","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015587622,0.000008530147,0.04181874,0.0031929035,0.000012326285,0.9541259,0.000020986468,0.00006727872,0.0005974711],"genre_scores_gemma":[0.0030012268,2.0282489e-7,0.11970275,0.00087843434,0.000058667592,0.876139,0.000005484393,0.000015597541,0.00019865621],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927425,0.000027178736,0.00019152078,0.00022372796,0.0001668129,0.00011648026],"domain_scores_gemma":[0.9989818,0.00002738567,0.00015522457,0.00039891282,0.000405418,0.00003130962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008222414,0.00009300987,0.0001603677,0.00002415319,0.00007765172,0.000008912241,0.000112988135,0.000108025604,0.00001714621],"category_scores_gemma":[0.00011523107,0.00006249284,0.000114626506,0.0003016126,0.000060350143,0.00003814953,0.00005191398,0.00029317147,0.0000011781901],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008820774,0.0015993287,0.0044536954,0.0039466647,0.0000731443,0.000019071133,0.00006458973,0.000017816263,0.7083971,0.20780075,0.035174526,0.029632539],"study_design_scores_gemma":[0.0018000606,0.0013892516,0.007415569,0.000917482,0.000023600964,0.00005411696,0.000013316655,0.00018955313,0.5932174,0.013307397,0.3815684,0.00010387998],"about_ca_topic_score_codex":4.7572607e-7,"about_ca_topic_score_gemma":4.998781e-7,"teacher_disagreement_score":0.34639385,"about_ca_system_score_codex":0.000029307865,"about_ca_system_score_gemma":0.00013725566,"threshold_uncertainty_score":0.2548384},"labels":[],"label_agreement":null},{"id":"W2782124702","doi":"10.1038/nprot.2017.135","title":"High-throughput in situ X-ray screening of and data collection from protein crystals at room temperature and under cryogenic conditions","year":2018,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Argonne National Laboratory; Office of Science; National Institutes of Health; Technische Universität Kaiserslautern; University of Toronto; Deutsche Forschungsgemeinschaft; U.S. Department of Energy","keywords":"Protein crystallization; In situ; Crystallization; Materials science; Membrane; Nanotechnology; Chemical engineering; Chemistry","score_opus":0.023981787845452397,"score_gpt":0.31972106176153653,"score_spread":0.2957392739160841,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2782124702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9722756,0.00018170902,0.0005258518,0.00026791403,0.000114288145,0.026072348,0.00035683863,0.000049965074,0.00015548397],"genre_scores_gemma":[0.9808127,0.0000023258813,0.01118686,0.00016196826,0.00028508095,0.00712023,0.00018480071,0.000018400577,0.00022759158],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985469,0.00013235117,0.0002915424,0.0005821009,0.00024713998,0.00019997313],"domain_scores_gemma":[0.999068,0.00008125071,0.00017216436,0.00049342087,0.00012585292,0.000059283833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033302585,0.00017685896,0.000270275,0.00009925084,0.00024051957,0.00009867787,0.0002039546,0.00044658437,0.00025220463],"category_scores_gemma":[0.000140297,0.00014757908,0.000017765216,0.0002902487,0.00017882917,0.0004658158,0.00026609754,0.00034508144,0.0000043562804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027977425,0.000024837263,0.00081801804,0.000051858566,0.000013316837,0.0000019708782,0.00013595176,0.0000085885895,0.9956233,0.0004187718,0.0025252108,0.000098405784],"study_design_scores_gemma":[0.002017789,0.0003605793,0.045441415,0.0004134713,0.000029648863,0.000014017169,0.000088345805,0.00010062508,0.94208306,0.005852151,0.003330914,0.00026799156],"about_ca_topic_score_codex":0.00021512997,"about_ca_topic_score_gemma":0.0016243847,"teacher_disagreement_score":0.053540245,"about_ca_system_score_codex":0.000046004112,"about_ca_system_score_gemma":0.00005781293,"threshold_uncertainty_score":0.60181004},"labels":[],"label_agreement":null},{"id":"W2887353628","doi":"10.1038/s41596-018-0015-8","title":"Microfabrication of AngioChip, a biodegradable polymer scaffold with microfluidic vasculature","year":2018,"lang":"en","type":"article","venue":"Nature Protocols","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":81,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Heart and Stroke Foundation; University Health Network; University of Toronto","funders":"","keywords":"Scaffold; Tissue engineering; Microfabrication; Biomedical engineering; Vascular network; Self-healing hydrogels; In vivo; Microfluidics; Materials science; Nanotechnology; Anatomy; Pathology; Biology; Medicine; Fabrication","score_opus":0.01006123911070179,"score_gpt":0.28558685107055526,"score_spread":0.2755256119598535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2887353628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.58407205,0.042671937,0.028459134,0.0027444344,0.0009747945,0.2855677,0.00019256418,0.0033155056,0.052001838],"genre_scores_gemma":[0.9703486,0.00002850032,0.008574814,0.00013524634,0.00039630313,0.019802583,0.000019483468,0.000091944654,0.0006025491],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986074,0.000035954024,0.00021992496,0.00026156587,0.0004951847,0.00037999562],"domain_scores_gemma":[0.9990306,0.000051524818,0.000050073057,0.00050438655,0.00024608997,0.00011733474],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003102087,0.00018199554,0.00021558133,0.00019491531,0.000058125916,0.0000384324,0.00040762543,0.0004512667,0.000113889284],"category_scores_gemma":[0.00006948994,0.00013661552,0.00007107169,0.0008646399,0.0002460317,0.00009463601,0.000060624796,0.00058150676,0.000053922915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000110497785,0.00008026427,0.0032428193,0.0004911099,0.00013195524,0.0000037642562,0.00012003665,0.0000014599262,0.9544017,0.00053503393,0.02850362,0.012377749],"study_design_scores_gemma":[0.0005165429,0.00016017935,0.0023471257,0.00033309788,0.000010703203,0.000011456041,0.0000059767017,0.00015718958,0.9272471,0.00008897111,0.068951316,0.00017034587],"about_ca_topic_score_codex":0.00001659923,"about_ca_topic_score_gemma":0.000003239319,"teacher_disagreement_score":0.38627648,"about_ca_system_score_codex":0.000054309177,"about_ca_system_score_gemma":0.00007140688,"threshold_uncertainty_score":0.5571019},"labels":[],"label_agreement":null},{"id":"W2887556920","doi":"10.1038/s41596-018-0019-4","title":"Pig lung transplant survival model","year":2018,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Transplantation: Methods and Outcomes","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; Toronto Rehabilitation Institute; Vale (Canada); University of Toronto; University Health Network","funders":"","keywords":"Medicine; Lung transplantation; Lung; Transplantation; Organ transplantation; Surgery; Intensive care medicine; Internal medicine","score_opus":0.0399097039479354,"score_gpt":0.4279149146766206,"score_spread":0.38800521072868516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2887556920","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.060728844,0.00040995397,0.42945626,0.008821837,0.001422037,0.38063994,0.00037642344,0.0012786946,0.11686602],"genre_scores_gemma":[0.77245784,0.0000144005235,0.160334,0.0036738366,0.0015962643,0.05769688,0.000076504046,0.00008469828,0.0040655793],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987998,0.00005989494,0.00023054998,0.00027809068,0.00036533826,0.00026633273],"domain_scores_gemma":[0.9993154,0.00007060888,0.00004871743,0.00028329753,0.00014781133,0.00013419801],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036818656,0.0001717024,0.00030602506,0.000076069846,0.00009216303,0.000021984228,0.00012273296,0.0003517074,0.00014051919],"category_scores_gemma":[0.00003604128,0.000125085,0.00011642343,0.0001615831,0.000069935944,0.00007843256,0.000007974374,0.0005808782,0.00003113524],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016306978,0.0013829248,0.69333386,0.006384027,0.0008691795,0.0006420205,0.008307859,0.00008841381,0.12366828,0.09323743,0.0150332935,0.04074572],"study_design_scores_gemma":[0.034021404,0.0030589546,0.47857997,0.004796102,0.0012316732,0.000740197,0.00013971598,0.05147947,0.28021687,0.011538993,0.13191786,0.0022787815],"about_ca_topic_score_codex":0.0000058391947,"about_ca_topic_score_gemma":0.000020561312,"teacher_disagreement_score":0.711729,"about_ca_system_score_codex":0.000030495277,"about_ca_system_score_gemma":0.00012292693,"threshold_uncertainty_score":0.5100818},"labels":[],"label_agreement":null},{"id":"W2890115677","doi":"10.1038/s41596-018-0022-9","title":"A three-dimensional engineered heterogeneous tumor model for assessing cellular environment and response","year":2018,"lang":"en","type":"article","venue":"Nature Protocols","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University Health Network; University of Toronto","funders":"","keywords":"Scaffold; TRACER; Confocal microscopy; Extracellular matrix; Cell culture; Flow cytometry; Biomedical engineering; Chemistry; Materials science; Biophysics; Cell biology; Biology; Biochemistry; Molecular biology","score_opus":0.024399068754929892,"score_gpt":0.3154580802126633,"score_spread":0.2910590114577334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2890115677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5157422,0.0003200074,0.41588593,0.00026122833,0.0001266027,0.06712549,0.000045657544,0.00041003004,0.00008284554],"genre_scores_gemma":[0.8721655,4.655303e-7,0.08033142,0.00009382593,0.00021020109,0.047065545,0.0000057450743,0.00007055635,0.000056733184],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9986772,0.000030013289,0.00019896613,0.00029166654,0.00040313503,0.0003990011],"domain_scores_gemma":[0.99922246,0.00024904805,0.00002484218,0.0002827137,0.000053255037,0.00016770966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007540275,0.00018032647,0.00017059705,0.000098738965,0.000103699254,0.0000775286,0.00018965133,0.0002640054,0.000037953327],"category_scores_gemma":[0.00030022478,0.0001632949,0.000049749542,0.000081011094,0.000121461635,0.000070477305,0.00010932316,0.00049014535,0.000017441042],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011392906,0.00011344597,0.00021570749,0.00063208234,0.00010320018,0.00005448331,0.00016058238,0.030033048,0.9515278,0.00018043375,0.003624351,0.0122155985],"study_design_scores_gemma":[0.0005992588,0.00011434015,0.00022364156,0.00010424305,0.0000049543473,0.00001266203,9.299745e-7,0.88558704,0.10391973,0.000765412,0.008489934,0.00017787883],"about_ca_topic_score_codex":6.687685e-7,"about_ca_topic_score_gemma":0.0000011118677,"teacher_disagreement_score":0.855554,"about_ca_system_score_codex":0.000108335786,"about_ca_system_score_gemma":0.000055094424,"threshold_uncertainty_score":0.6658973},"labels":[],"label_agreement":null},{"id":"W2891006829","doi":"10.1038/s41596-018-0033-6","title":"Preparation of asymmetric phospholipid vesicles for use as cell membrane models","year":2018,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":166,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"","keywords":"Vesicle; Phospholipid; Liposome; Chemistry; Lipid bilayer; POPC; Phosphatidylcholine; Sphingomyelin; Biophysics; Membrane; Chromatography; Bilayer; Lipid bilayer phase behavior; Biochemistry; Biology","score_opus":0.01891173485626842,"score_gpt":0.34201224618201154,"score_spread":0.32310051132574313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2891006829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.924219,0.00011078356,0.0019612054,0.00004316657,0.00030534656,0.06934526,0.00012872227,0.000036191108,0.0038503297],"genre_scores_gemma":[0.9725033,0.000006056434,0.005819637,0.00026571885,0.00069481134,0.019681375,0.00010584604,0.000030616982,0.000892647],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895364,0.0000320065,0.0002474926,0.00037102328,0.00018056408,0.00021527195],"domain_scores_gemma":[0.99894184,0.000020936903,0.00016460336,0.00042315753,0.00038524764,0.00006419679],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015042504,0.00017247323,0.00018942931,0.00006916312,0.00006719126,0.000032331674,0.00022135112,0.00049430993,0.000014758139],"category_scores_gemma":[0.000103199745,0.00014490765,0.00012715583,0.00018280541,0.00007329752,0.000019417248,0.000054873828,0.00013476446,0.0000043764644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009243316,0.00010354059,0.00012443648,0.000116097144,0.000018170456,2.565706e-7,0.000039742812,0.000012998292,0.99446297,0.0002845395,0.001807704,0.002105208],"study_design_scores_gemma":[0.0011144901,0.0011975814,0.00010918438,0.000022249997,0.00002974236,0.000004638147,0.0000061768947,0.00010179842,0.9394213,0.00022370511,0.05760522,0.00016392769],"about_ca_topic_score_codex":0.000012092725,"about_ca_topic_score_gemma":0.000009323347,"teacher_disagreement_score":0.055797514,"about_ca_system_score_codex":0.000009588446,"about_ca_system_score_gemma":0.00011036269,"threshold_uncertainty_score":0.5909162},"labels":[],"label_agreement":null},{"id":"W2900884817","doi":"10.1038/s41596-018-0082-x","title":"Single-pot, solid-phase-enhanced sample preparation for proteomics experiments","year":2018,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":2013,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Victoria; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Chaotropic agent; Sample preparation; Chromatography; Proteomics; Lysis; Protein purification; Reagent; Chemistry; Computer science; Materials science; Nanotechnology; Biochemistry","score_opus":0.03518943859435803,"score_gpt":0.4472757441547395,"score_spread":0.41208630556038145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900884817","genre_codex":"methods","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.015941458,0.000014996371,0.8548861,0.00013444205,0.000036036072,0.12182332,0.00024305329,0.0005314752,0.006389117],"genre_scores_gemma":[0.13161694,5.699185e-7,0.3870028,0.00013630584,0.0004956319,0.4801132,0.00012108057,0.000043779848,0.00046969528],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864775,0.000008729192,0.00034680837,0.0004929476,0.00017559326,0.00032819188],"domain_scores_gemma":[0.99867254,0.00006179125,0.00026825702,0.0005898138,0.0003257524,0.0000818631],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108237655,0.00022497623,0.0002120002,0.000037024773,0.00027467147,0.00007818499,0.0003348797,0.00048062624,0.00016037856],"category_scores_gemma":[0.00019839377,0.00021971803,0.0000921383,0.00012439761,0.00009651911,0.00017433643,0.00006817395,0.00032552646,0.000012130035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005383704,0.00033160465,0.000007774389,0.000085270935,0.000014016689,1.06174596e-7,0.00012358304,0.0000021244582,0.99081886,0.0024923368,0.0012082319,0.004377731],"study_design_scores_gemma":[0.0012418699,0.00037272167,4.0856796e-7,0.00008934286,0.0000064509895,0.0000013829651,0.000013068569,0.00048240586,0.8445006,0.01815705,0.13491164,0.00022306653],"about_ca_topic_score_codex":0.0000027974809,"about_ca_topic_score_gemma":0.0000041700687,"teacher_disagreement_score":0.46788332,"about_ca_system_score_codex":0.00014921432,"about_ca_system_score_gemma":0.00006498852,"threshold_uncertainty_score":0.8959841},"labels":[],"label_agreement":null},{"id":"W2909529273","doi":"10.1038/s41596-018-0099-1","title":"Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute","keywords":"Barcode; Computational biology; Computer science; Multiplexing; Software; DNA sequencing; Throughput; Pipeline (software); Biology; Data mining; Genetics; Gene","score_opus":0.048170575095178324,"score_gpt":0.3727368397069289,"score_spread":0.3245662646117506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909529273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9581897,0.00015650813,0.0066147144,0.000054925622,0.00033817862,0.03411006,0.00004906599,0.000028061224,0.0004587682],"genre_scores_gemma":[0.9288144,0.0000013179738,0.04942737,0.0008405087,0.0003576087,0.01981639,0.000038780167,0.000053446165,0.00065016415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864334,0.000090851296,0.00024240871,0.0005368963,0.00020465572,0.0002818633],"domain_scores_gemma":[0.9991218,0.000019711948,0.00009782859,0.0005606864,0.00009342091,0.000106564585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009570922,0.00021983504,0.0001933872,0.000059215694,0.00008117055,0.00007262945,0.0003071664,0.00034037846,0.00023622664],"category_scores_gemma":[0.00006985086,0.00020548294,0.00010628685,0.00006530054,0.000013622044,0.000010474497,0.00014463793,0.00024137045,0.00013076975],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017410332,0.000031422336,0.0019636636,0.00001559441,0.000043138378,0.0000029823623,0.00008823997,0.000107008935,0.99679595,0.000020864301,0.00017008663,0.00058693974],"study_design_scores_gemma":[0.00047991614,0.00013901677,0.00042705316,0.00016457424,0.000008418671,0.0000069034895,0.000082735045,0.00023390753,0.97343767,0.000064036925,0.024694428,0.00026132652],"about_ca_topic_score_codex":0.00014221453,"about_ca_topic_score_gemma":0.00004254519,"teacher_disagreement_score":0.042812657,"about_ca_system_score_codex":0.00006421105,"about_ca_system_score_gemma":0.0000778368,"threshold_uncertainty_score":0.8379351},"labels":[],"label_agreement":null},{"id":"W2910111050","doi":"10.1038/s41596-018-0103-9","title":"Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2143,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Ontario Genomics; Hospital for Sick Children; University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Cancer Institute; National Human Genome Research Institute","keywords":"Computational biology; Troubleshooting; Visualization; Protocol (science); Biology; Genomics; Genome; Functional genomics; Genome browser; Bioinformatics; Gene; Computer science; Data mining; Genetics","score_opus":0.014215787930258184,"score_gpt":0.31440175457576247,"score_spread":0.3001859666455043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2910111050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89531326,0.001956856,0.047103204,0.00012346804,0.00016046167,0.053474262,0.0004124872,0.000020541846,0.0014354686],"genre_scores_gemma":[0.99149835,0.00008291652,0.0060218354,0.00031983238,0.00009286385,0.000988746,0.00082808826,0.000016943068,0.0001503956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991095,0.000032137377,0.00026789127,0.00031241978,0.00013081357,0.00014723053],"domain_scores_gemma":[0.9991226,0.000010537323,0.00020011103,0.00054146186,0.0000714279,0.00005384498],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003185702,0.00013378052,0.0002139945,0.00007640905,0.000039737613,0.000037527403,0.00019518156,0.00031042393,0.000011744851],"category_scores_gemma":[0.000018761284,0.00011790762,0.000037130572,0.00019279517,0.00003591436,0.000011720451,0.00037593616,0.000119013224,7.193541e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000344833,0.0001826342,0.17277569,0.00067893625,0.0011483054,0.0000010915389,0.00021506139,0.00033312358,0.80685467,0.0025723786,0.0013554823,0.013537808],"study_design_scores_gemma":[0.008603241,0.0021087115,0.040708743,0.00038390374,0.001222692,0.00004394767,0.0005421771,0.22157608,0.51294875,0.0012271258,0.20847405,0.0021605638],"about_ca_topic_score_codex":0.000006352258,"about_ca_topic_score_gemma":0.000008143657,"teacher_disagreement_score":0.29390588,"about_ca_system_score_codex":0.000008888919,"about_ca_system_score_gemma":0.000056130837,"threshold_uncertainty_score":0.48081332},"labels":[],"label_agreement":null},{"id":"W2914552035","doi":"10.1038/s41596-018-0122-6","title":"Design, execution, and analysis of CRISPR–Cas9-based deletions and genetic interaction networks in the fungal pathogen Candida albicans","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Banting Research Foundation; Natural Sciences and Engineering Research Council of Canada; Burroughs Wellcome Fund","keywords":"CRISPR; Candida albicans; Biology; Cas9; Genome editing; Computational biology; Gene; Plasmid; Genetics; Genome; Model organism","score_opus":0.015920883856954737,"score_gpt":0.33201621289535405,"score_spread":0.3160953290383993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914552035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9144626,0.00057770085,0.030126259,0.0005331098,0.00002824549,0.054024212,0.000024387686,0.000017368093,0.00020610854],"genre_scores_gemma":[0.9913028,0.000013923101,0.0009269235,0.00044783496,0.000024018307,0.0072198855,0.000023895154,0.0000069834723,0.000033749777],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989336,0.000192775,0.00025622093,0.00025901617,0.00020887548,0.00014949219],"domain_scores_gemma":[0.9991989,0.00022684879,0.0000980786,0.00029676218,0.0001299077,0.00004946264],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004336297,0.00011286578,0.00030321843,0.00016470694,0.000048892507,0.00002133317,0.000064399705,0.00020750103,0.000060816394],"category_scores_gemma":[0.00010503187,0.0000757443,0.00007092707,0.0005992127,0.00006819572,0.000048062666,0.000013763567,0.00045796004,7.245762e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008979464,0.00013987473,0.9886483,0.00014248487,0.00012026048,0.000016155624,0.0002612754,0.00094296905,0.00675831,0.000062785184,0.00016436704,0.0018452866],"study_design_scores_gemma":[0.00088473177,0.00033120892,0.9721279,0.00015212575,0.00033273586,0.000009382515,0.00017514428,0.024755944,0.00047643462,0.000036058973,0.0006326759,0.0000856318],"about_ca_topic_score_codex":0.000069529095,"about_ca_topic_score_gemma":0.00043689794,"teacher_disagreement_score":0.07684018,"about_ca_system_score_codex":0.000043272055,"about_ca_system_score_gemma":0.0000808477,"threshold_uncertainty_score":0.30887628},"labels":[],"label_agreement":null},{"id":"W2924273050","doi":"10.1038/s41596-019-0129-7","title":"Bioluminescence resonance energy transfer–based imaging of protein–protein interactions in living cells","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"bioluminescence and chemiluminescence research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":121,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"Bioluminescence; Förster resonance energy transfer; Energy transfer; Protein–protein interaction; Biophysics; Cell biology; Biology; Chemistry; Physics; Biochemistry; Fluorescence","score_opus":0.007915558356889648,"score_gpt":0.2936134606851503,"score_spread":0.28569790232826064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2924273050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95844555,0.00094707304,0.0015459968,0.0003895265,0.00010143926,0.036979258,0.000043371398,0.000039375383,0.0015084117],"genre_scores_gemma":[0.9781479,0.000008283074,0.00053462945,0.00012724038,0.00010831778,0.019909814,0.000024897665,0.000032627686,0.0011062926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99814016,0.00009994123,0.0003893798,0.000600168,0.00030951662,0.00046082528],"domain_scores_gemma":[0.99898976,0.000026736145,0.00008854681,0.0005793832,0.0002324464,0.00008310424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031142405,0.0002464165,0.00026123488,0.00014583897,0.000041741278,0.000030742183,0.00051401596,0.000279339,0.00006501998],"category_scores_gemma":[0.00011124975,0.00023370888,0.00013192843,0.0004371495,0.00012789264,0.000027327154,0.00009861638,0.00050882547,0.00000858342],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020077344,0.00021363204,0.029093696,0.0002670471,0.0000055588357,0.0000036986744,0.000015926278,0.000002942479,0.96695334,0.00008883488,0.00009197076,0.003062591],"study_design_scores_gemma":[0.00059249235,0.00014597873,0.0016606983,0.0015764206,0.000002048016,0.0000031767456,0.00003485849,0.0002551271,0.9788308,0.000015815835,0.016616939,0.0002656455],"about_ca_topic_score_codex":0.00010833707,"about_ca_topic_score_gemma":0.000114239294,"teacher_disagreement_score":0.027432997,"about_ca_system_score_codex":0.000037713304,"about_ca_system_score_gemma":0.0002354881,"threshold_uncertainty_score":0.95303714},"labels":[],"label_agreement":null},{"id":"W2938571768","doi":"10.1038/s41596-019-0157-3","title":"Author Correction: Design, execution, and analysis of CRISPR–Cas9-based deletions and genetic interaction networks in the fungal pathogen Candida albicans","year":2019,"lang":"en","type":"erratum","venue":"Nature Protocols","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"CRISPR; Candida albicans; Genome editing; Computational biology; Locus (genetics); Cas9; Genetics; Biology; Sentence; Computer science; Genome; Gene; Artificial intelligence","score_opus":0.02417847305317495,"score_gpt":0.35144949995929053,"score_spread":0.3272710269061156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2938571768","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02313362,0.020435136,0.28257588,0.0069235624,0.015544315,0.6421567,0.0011157024,0.00029843635,0.007816627],"genre_scores_gemma":[0.896793,0.00027948403,0.0018022464,0.001718555,0.0012029302,0.07316323,0.0014458589,0.00009872359,0.02349593],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9975854,0.00048062595,0.00057518,0.00060552085,0.00047740852,0.00027584963],"domain_scores_gemma":[0.99815154,0.00039614504,0.0003675603,0.0006137308,0.00037475032,0.00009624894],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007531946,0.00032763678,0.0008528908,0.0004731839,0.00012835885,0.000060033475,0.0001448805,0.0012277202,0.00008798395],"category_scores_gemma":[0.00041774946,0.00023352102,0.00021861617,0.0011431184,0.00015554854,0.000061936735,0.000031390733,0.0024779816,0.0000010086052],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041103642,0.00068202964,0.37053,0.0018306263,0.0012869444,0.00015589356,0.0008508868,0.0019062408,0.00060600205,0.00004745317,0.60967755,0.008316002],"study_design_scores_gemma":[0.0013283617,0.0010126391,0.8363915,0.0017098676,0.0028955743,0.00006292658,0.00037927504,0.06361174,0.000068333764,0.000029682025,0.09209798,0.0004121014],"about_ca_topic_score_codex":0.00017287211,"about_ca_topic_score_gemma":0.0017598708,"teacher_disagreement_score":0.87365943,"about_ca_system_score_codex":0.00016521683,"about_ca_system_score_gemma":0.00048078285,"threshold_uncertainty_score":0.99982333},"labels":[],"label_agreement":null},{"id":"W2941622870","doi":"10.1038/s41596-019-0162-6","title":"Real-time microscopy and physical perturbation of bacterial pili using maleimide-conjugated molecules","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Nature; National Institute of General Medical Sciences; Canada Research Chairs","keywords":"Pilus; Maleimide; Pilin; Cysteine; Biophysics; Förster resonance energy transfer; Chemistry; Biochemistry; Biology; Fluorescence; Escherichia coli; Gene; Polymer chemistry","score_opus":0.007071719328633781,"score_gpt":0.2828948478523218,"score_spread":0.275823128523688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2941622870","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98946786,0.000020057605,0.000005053229,0.00002040467,0.000072817566,0.010041631,0.0000305842,0.000010683066,0.0003309229],"genre_scores_gemma":[0.9942766,0.000010869623,0.004352954,0.00005644961,0.0003651036,0.00051865034,0.00016178362,0.000032502347,0.0002250868],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992127,0.000056784473,0.00016801931,0.0003035676,0.000092272174,0.0001666836],"domain_scores_gemma":[0.9994881,0.000009625835,0.00012854602,0.00022506215,0.00010349018,0.000045132027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006788602,0.00015428923,0.00021770461,0.000027936181,0.00004141982,0.000026537135,0.00007722354,0.0003460546,0.00002146363],"category_scores_gemma":[0.000034979046,0.00013625681,0.000062202846,0.00005575521,0.00007180638,0.000008273154,0.00007705934,0.0001278881,0.0000049682667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053922564,0.000042865762,0.0005192728,0.000053358734,0.000022248898,8.913218e-7,0.00003911625,0.0000025192921,0.99846554,0.000037254737,0.000083507606,0.00019419416],"study_design_scores_gemma":[0.0007977623,0.0003707203,0.0012998022,0.00007041789,0.00001045852,0.000017577893,0.0000062766676,0.00028774323,0.99464816,0.000014239981,0.002313403,0.00016344688],"about_ca_topic_score_codex":0.000012363881,"about_ca_topic_score_gemma":7.944581e-7,"teacher_disagreement_score":0.00952298,"about_ca_system_score_codex":0.00000887942,"about_ca_system_score_gemma":0.000059768972,"threshold_uncertainty_score":0.5556392},"labels":[],"label_agreement":null},{"id":"W2948670875","doi":"10.1038/s41596-019-0169-z","title":"Derivation and maintenance of mouse haploid embryonic stem cells","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Cancer Research UK; Wellcome Trust","keywords":"Ploidy; Biology; Embryonic stem cell; Genetics; Stem cell; Gene; Genome; Chromosome; Developmental biology; Mutagenesis; Cell biology; Mutation","score_opus":0.008612147676888492,"score_gpt":0.279098127381604,"score_spread":0.2704859797047155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2948670875","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9625078,0.00023656069,0.00016410899,0.00013029843,0.000045816065,0.036064483,0.000020678446,0.000010606328,0.0008196834],"genre_scores_gemma":[0.9721126,0.000040413037,0.0006686242,0.00015454531,0.000056369707,0.01022508,0.000019878005,0.000028812843,0.016693681],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991208,0.00004988431,0.00014087738,0.0002946743,0.00019413947,0.00019963192],"domain_scores_gemma":[0.9993621,0.000011083504,0.00009112795,0.0003454656,0.00014008797,0.000050144597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019343902,0.00010769422,0.0001356262,0.000038353406,0.000022064543,0.000017143328,0.00019072762,0.00030451218,0.000012383439],"category_scores_gemma":[0.000019101011,0.000092297865,0.000042716238,0.000076854805,0.000043737444,0.000005184938,0.0001341204,0.00023585156,0.000019133986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015672023,0.000032268817,0.0024934043,0.00023522106,0.000015729463,7.538325e-7,0.000007815829,0.000013118444,0.99454,0.00010063817,0.0015609837,0.0008433472],"study_design_scores_gemma":[0.0007907079,0.00026677464,0.0006249341,0.000055791283,0.000001910074,0.0000038657604,0.000013218739,0.00006614231,0.95045453,0.000018806175,0.04760297,0.00010032264],"about_ca_topic_score_codex":0.0000021330277,"about_ca_topic_score_gemma":0.0000033225954,"teacher_disagreement_score":0.046041988,"about_ca_system_score_codex":0.000012639706,"about_ca_system_score_gemma":0.00005902468,"threshold_uncertainty_score":0.3763798},"labels":[],"label_agreement":null},{"id":"W2970087737","doi":"10.1038/s41596-019-0202-2","title":"Preparation of cfMeDIP-seq libraries for methylome profiling of plasma cell-free DNA","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":199,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Princess Margaret Cancer Centre; University Health Network","funders":"Canadian Institutes of Health Research","keywords":"Methylated DNA immunoprecipitation; DNA methylation; Cell-free fetal DNA; Liquid biopsy; Bisulfite sequencing; Computational biology; DNA; Epigenomics; Biology; Molecular biology; Gene; Genetics; Cancer; Gene expression; Fetus; Prenatal diagnosis","score_opus":0.008605158081982917,"score_gpt":0.3098528502122353,"score_spread":0.3012476921302524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2970087737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8698755,0.00093593326,0.002255134,0.0001503205,0.0003130739,0.11961541,0.0005604423,0.000017471584,0.006276696],"genre_scores_gemma":[0.93072987,0.000021223283,0.030918749,0.00011888968,0.0002807413,0.037153818,0.00024234915,0.00003781805,0.0004965432],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992529,0.00001720959,0.00025675722,0.00022727222,0.000116000876,0.00012984725],"domain_scores_gemma":[0.99909276,0.000065293556,0.00021571277,0.00042196843,0.00017252167,0.000031764415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015722039,0.00010726648,0.00018909771,0.000035532285,0.000018302877,0.000013888522,0.00025170925,0.00033214648,0.000006913464],"category_scores_gemma":[0.00021786497,0.00009928644,0.00009433902,0.00006271513,0.000037185433,0.000007313468,0.00011548444,0.00009842463,8.0828625e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008046675,0.00007398303,0.0007370434,0.00054798817,0.000029562592,1.04383446e-7,0.0000558945,0.00018478147,0.99079716,0.004078786,0.0023694944,0.0003205115],"study_design_scores_gemma":[0.0013429549,0.000861907,0.000060694892,0.000040841453,0.000012360011,5.747288e-7,0.00002409411,0.00017685443,0.95980555,0.002777439,0.034792144,0.00010458898],"about_ca_topic_score_codex":0.000002430277,"about_ca_topic_score_gemma":0.000005885533,"teacher_disagreement_score":0.082461596,"about_ca_system_score_codex":0.000008985773,"about_ca_system_score_gemma":0.00022831783,"threshold_uncertainty_score":0.40487835},"labels":[],"label_agreement":null},{"id":"W2975652314","doi":"10.1038/s41596-019-0213-z","title":"Generation of blood vessel organoids from human pluripotent stem cells","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Angiogenesis and VEGF in Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":312,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Matrigel; Organoid; Induced pluripotent stem cell; Cell biology; Mural cell; Mesoderm; Biology; Vasculogenesis; Stem cell; Anatomy; Blood vessel; Endothelial stem cell; Embryonic stem cell; Angiogenesis; Progenitor cell; In vitro; Cancer research; Endocrinology","score_opus":0.019054601311104293,"score_gpt":0.29362458794426427,"score_spread":0.27456998663315996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2975652314","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9818483,0.00075923576,0.0001277655,0.000030759165,0.0001322802,0.01656346,0.00006190142,0.000009720771,0.00046656388],"genre_scores_gemma":[0.9902279,0.000013214479,0.0005394701,0.00020781627,0.0005789035,0.007141952,0.00010987524,0.000026612257,0.0011542712],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991382,0.00003713189,0.00020933193,0.00031866244,0.00016190352,0.00013476981],"domain_scores_gemma":[0.99930704,0.000003874819,0.00013363939,0.00039210354,0.00012394247,0.00003942081],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000093525,0.00013167765,0.0001577157,0.000021886235,0.0000369554,0.000016930839,0.00019139536,0.00041451774,0.000118773765],"category_scores_gemma":[0.000003297261,0.000113708,0.000099933444,0.000058413174,0.000021956857,0.0000033934336,0.00006710634,0.00012571288,0.000014965312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031842577,0.000082530394,0.0034617577,0.000038470764,0.00007049404,6.207012e-7,0.000016032767,0.000025203237,0.9930653,0.000115990784,0.0025735283,0.00051824335],"study_design_scores_gemma":[0.000714547,0.00027728363,0.0009823783,0.00003417848,0.00002349872,7.224469e-7,0.000008132007,0.000014037559,0.9461051,0.000022284412,0.051683087,0.00013471367],"about_ca_topic_score_codex":0.00001226636,"about_ca_topic_score_gemma":0.000007403145,"teacher_disagreement_score":0.049109556,"about_ca_system_score_codex":0.000008346942,"about_ca_system_score_gemma":0.000057130947,"threshold_uncertainty_score":0.46368778},"labels":[],"label_agreement":null},{"id":"W2981015241","doi":"10.1038/s41596-019-0221-z","title":"Magnetically guided virus stamping for the targeted infection of single cells or groups of cells","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Transduction (biophysics); Virus; Cell biology; Transgene; Biology; Cell culture; Cell; Virology; Nanotechnology; Biophysics; Materials science; Genetics; Gene","score_opus":0.011639307553013983,"score_gpt":0.3290087527624785,"score_spread":0.31736944520946453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981015241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7790233,0.0008627832,0.08573034,0.00010356672,0.00073112943,0.13252294,0.00015591015,0.000039673207,0.0008303407],"genre_scores_gemma":[0.98472303,0.000021698752,0.0055347043,0.0000880665,0.00015006364,0.008996767,0.00001973326,0.000030088151,0.00043585122],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992522,0.000021739708,0.000252861,0.00019371272,0.00011923243,0.00016027296],"domain_scores_gemma":[0.9993279,0.00005028205,0.000109466826,0.0003167448,0.00016761107,0.000028023636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019235573,0.00011863747,0.0001589524,0.000029908664,0.000022803453,0.000010271529,0.00015509431,0.0002706178,0.00004312387],"category_scores_gemma":[0.00008130294,0.000082060214,0.00010376652,0.000094794785,0.000032142307,0.0000024932272,0.00005776428,0.00012318457,0.0000016428228],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023730079,0.00006630225,0.00017403148,0.00030085447,0.00003062068,1.205873e-7,0.000022663484,0.0011637013,0.99599683,0.00003520349,0.00095289946,0.0010194774],"study_design_scores_gemma":[0.00069670763,0.000913184,0.00051980047,0.000050814346,0.000015948113,0.0000013916275,0.000007684216,0.00029890487,0.9511527,0.000026996224,0.046213835,0.00010205715],"about_ca_topic_score_codex":0.000011799012,"about_ca_topic_score_gemma":0.000020600395,"teacher_disagreement_score":0.20569971,"about_ca_system_score_codex":0.0000075621742,"about_ca_system_score_gemma":0.000042581058,"threshold_uncertainty_score":0.33463183},"labels":[],"label_agreement":null},{"id":"W2991632990","doi":"10.1038/s41596-019-0259-y","title":"Small-scale approach for precrystallization screening in GPCR X-ray crystallography","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Receptor Mechanisms and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; U.S. Department of Health and Human Services","keywords":"Sf9; G protein-coupled receptor; Absorbance; Computational biology; Receptor; Drug discovery; Chromatography; Biology; Chemistry; Spodoptera; Cell biology; Biophysics; Biochemistry; Recombinant DNA","score_opus":0.014813577834405603,"score_gpt":0.2714282231843341,"score_spread":0.2566146453499285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2991632990","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14389625,0.0002720519,0.72087896,0.000041615865,0.00010792062,0.13214684,0.000031167183,0.000045384055,0.0025798446],"genre_scores_gemma":[0.7085326,0.0000056257986,0.19033384,0.0002927036,0.00028490942,0.09919365,0.00054123974,0.00006758694,0.0007478631],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889207,0.000050566643,0.00021438871,0.00044929283,0.00012755538,0.00026615273],"domain_scores_gemma":[0.9994846,0.000010718731,0.000094095594,0.00026143363,0.000098554534,0.000050619918],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036338938,0.00016498096,0.0001755366,0.00008624665,0.00004554399,0.000045959423,0.00021523618,0.000541121,0.000027026406],"category_scores_gemma":[0.0000332831,0.0001518967,0.00012873541,0.00016625044,0.000014500274,0.00000670866,0.000055543613,0.00019954378,6.2128026e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002817532,0.0000940062,0.00935102,0.00017442355,0.000024257664,2.214146e-7,0.000040623792,0.002462348,0.98553073,0.00024512218,0.00017772762,0.0016177599],"study_design_scores_gemma":[0.005433836,0.0012510059,0.0027349107,0.00028399314,0.000020076019,0.000005860334,0.00022869658,0.008740377,0.7580037,0.0007177423,0.22165816,0.0009216317],"about_ca_topic_score_codex":0.0000028859276,"about_ca_topic_score_gemma":0.000008917199,"teacher_disagreement_score":0.56463635,"about_ca_system_score_codex":0.000007643498,"about_ca_system_score_gemma":0.00003409304,"threshold_uncertainty_score":0.6194168},"labels":[],"label_agreement":null},{"id":"W2995125854","doi":"10.1038/s41596-019-0255-2","title":"Solid-state nanopore fabrication by automated controlled breakdown","year":2019,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Nanopore and Nanochannel Transport Studies","field":"Engineering","cited_by":199,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Ontario Centres of Excellence","keywords":"Nanopore; Fabrication; Nanotechnology; Nanopore sequencing; Biophysics; Materials science; Chemistry; Biology; Medicine; Biochemistry","score_opus":0.004077887118898272,"score_gpt":0.2760572644590171,"score_spread":0.27197937734011884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995125854","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1113249,0.0065428247,0.0028626397,0.0016063603,0.0030244652,0.77794904,0.00092623907,0.021964975,0.07379855],"genre_scores_gemma":[0.90234476,0.000043752432,0.00019203273,0.0002135111,0.0000965289,0.09502656,0.00014113748,0.00007722362,0.0018644609],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99864537,0.000021648711,0.00038537028,0.00028180418,0.00028301962,0.0003828009],"domain_scores_gemma":[0.99933356,0.00004131573,0.00008135094,0.0003099417,0.00015923362,0.00007461741],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017008124,0.0002908833,0.00053078623,0.00010131476,0.00008275541,0.000037717396,0.00021640056,0.00032818943,0.000102510836],"category_scores_gemma":[0.000019728559,0.0002386852,0.000126493,0.00031367387,0.000024138519,0.00015467411,0.00001787853,0.0004636828,0.00018857265],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022676636,0.00063005777,0.01401635,0.002993454,0.0018197413,0.00006578312,0.0016721163,0.007986831,0.42932177,0.00067225524,0.5293934,0.009160617],"study_design_scores_gemma":[0.020848792,0.0004067512,0.0037219634,0.0006414711,0.00008995315,0.0000178169,0.0000538303,0.03192056,0.34027284,0.0006346789,0.5999328,0.0014585376],"about_ca_topic_score_codex":0.000006549804,"about_ca_topic_score_gemma":0.000008393864,"teacher_disagreement_score":0.7910199,"about_ca_system_score_codex":0.00005775712,"about_ca_system_score_gemma":0.000020456715,"threshold_uncertainty_score":0.97333},"labels":[],"label_agreement":null},{"id":"W2998761415","doi":"10.1038/s41596-019-0257-0","title":"A comprehensive guide to dynamic analysis of microbial gene expression using the 3D-printed PFIbox and a fluorescent reporter library","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Reporter gene; Gene expression; Fluorophore; Fluorescence; Computational biology; Biology; Gene; Chemistry; Molecular biology; Nanotechnology; Materials science; Genetics; Physics; Optics","score_opus":0.010683411519021553,"score_gpt":0.32706479838996405,"score_spread":0.31638138687094247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998761415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91768175,0.00046834385,0.034403566,0.0010211791,0.000013359645,0.046116043,0.00005295461,0.00007231457,0.00017051665],"genre_scores_gemma":[0.8734487,0.000028895765,0.11306086,0.005004315,0.00014741912,0.00783628,0.00029044936,0.000057411686,0.00012563703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988601,0.00009145163,0.0003401441,0.00043320627,0.00013800709,0.00013707367],"domain_scores_gemma":[0.99908787,0.000010238919,0.00019368915,0.00048970483,0.00013931973,0.00007919266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007712191,0.00015572863,0.00028702785,0.000095569296,0.000046920726,0.000040596286,0.00024725692,0.00021597557,0.000018071069],"category_scores_gemma":[0.00007356111,0.00011248529,0.00017319722,0.0004710608,0.000055124026,0.0000069808398,0.00046930896,0.00017933494,3.083102e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020582508,0.000028339698,0.0013581254,0.000038958326,0.00029839604,0.000009419703,0.00006583611,0.000064795844,0.9935505,4.7332776e-7,0.003961235,0.0004180873],"study_design_scores_gemma":[0.0001944064,0.00010415647,0.00086768577,0.000040150906,0.00021376829,0.00000688016,0.000020080208,0.0017674959,0.95915085,0.000002427546,0.037508093,0.00012399387],"about_ca_topic_score_codex":0.000008387875,"about_ca_topic_score_gemma":0.0000059670538,"teacher_disagreement_score":0.07865729,"about_ca_system_score_codex":0.000009264976,"about_ca_system_score_gemma":0.000043913977,"threshold_uncertainty_score":0.4587017},"labels":[],"label_agreement":null},{"id":"W2998937323","doi":"10.1038/s41596-019-0249-0","title":"Activation and expansion of human T cells using artificial antigen-presenting cell scaffolds","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CAR-T cell therapy research","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; U.S. Food and Drug Administration; National Institutes of Health; Government of Canada; U.S. Department of Health and Human Services","keywords":"Cell biology; Antigen-presenting cell; T cell; Antigen; Chimeric antigen receptor; Chemistry; Cell; Cell culture; Cell therapy; Ex vivo; Biology; Molecular biology; In vitro; Stem cell; Immunology; Biochemistry; Immune system","score_opus":0.07538587506011594,"score_gpt":0.40112151878599217,"score_spread":0.3257356437258762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998937323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9548348,0.000022117832,0.00013957721,0.00023514604,0.000018722643,0.043433946,0.0000029292532,0.00003854292,0.0012742161],"genre_scores_gemma":[0.9957104,0.0000020606121,0.0013132474,0.00018228481,0.00037906007,0.0022774478,0.000008387181,0.000033567085,0.000093580114],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861944,0.00006346525,0.00027785433,0.0003053981,0.00051014486,0.00022371176],"domain_scores_gemma":[0.99929106,0.000046071647,0.00013755678,0.00020979768,0.00018037473,0.00013515142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025412117,0.00013406533,0.00028237604,0.000108593566,0.00010195908,0.000036427064,0.0000929395,0.0002954103,0.00023703283],"category_scores_gemma":[0.000058343256,0.0001215872,0.000071858216,0.00033734855,0.00006272853,0.00010486177,0.000095046795,0.0004381273,0.000003111838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040960574,0.000083076215,0.0030746055,0.0005391128,0.000014774949,0.000008955675,0.00039398053,0.000005942581,0.99165666,0.00007532006,0.00010817875,0.0036297701],"study_design_scores_gemma":[0.0009816214,0.0003390095,0.001503966,0.0002095877,0.000011616116,0.0000027599776,0.000095050906,0.001178967,0.99359226,0.00010845942,0.0018766127,0.00010009568],"about_ca_topic_score_codex":0.000017624858,"about_ca_topic_score_gemma":8.976095e-7,"teacher_disagreement_score":0.041156497,"about_ca_system_score_codex":0.00003508909,"about_ca_system_score_gemma":0.00009393815,"threshold_uncertainty_score":0.49581823},"labels":[],"label_agreement":null},{"id":"W2999175750","doi":"10.1038/s41596-019-0264-1","title":"Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1822,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Profiling (computer programming); Computer science; Microbiome; Protocol (science); Data mining; Data science; Metagenomics; Computational biology; Web application; Human Microbiome Project; Bioinformatics; Human microbiome; World Wide Web; Biology; Medicine","score_opus":0.3441482971478156,"score_gpt":0.45423903599730675,"score_spread":0.11009073884949117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2999175750","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.095598616,0.026193893,0.46496674,0.010756979,0.00021049465,0.27508828,0.1268837,0.00014684728,0.00015442666],"genre_scores_gemma":[0.61361533,0.00006691879,0.3199546,0.018917417,0.0005337416,0.014353493,0.03214718,0.00015877173,0.00025255594],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.998758,0.00006355,0.00032651148,0.00058458134,0.00008191082,0.00018545499],"domain_scores_gemma":[0.9989319,0.00004018356,0.00019014746,0.0004763175,0.0002594511,0.0001020296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014264762,0.00017431738,0.0006835677,0.000095583,0.000078719626,0.000028276376,0.0002580796,0.00026075105,0.000057787354],"category_scores_gemma":[0.00006640549,0.00014494588,0.00023985223,0.00035052,0.00010335748,0.000005773858,0.00023748052,0.00014588989,9.0621023e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019701051,0.000044427212,0.00008753193,0.00023824436,0.026587913,5.70436e-7,0.000013668263,0.000045544504,0.957576,0.00012176619,0.015066381,0.00002095011],"study_design_scores_gemma":[0.0021551598,0.0006654929,0.0015881096,0.000008539228,0.17146881,0.000018617098,0.0000760262,0.0031398935,0.20826305,0.000038453592,0.6119229,0.0006548981],"about_ca_topic_score_codex":0.000012534931,"about_ca_topic_score_gemma":0.000018585608,"teacher_disagreement_score":0.74931294,"about_ca_system_score_codex":0.000005783309,"about_ca_system_score_gemma":0.000105945706,"threshold_uncertainty_score":0.59107214},"labels":[],"label_agreement":null},{"id":"W3000155195","doi":"10.1038/s41596-019-0238-3","title":"Manipulating gene translation in plants by CRISPR–Cas9-mediated genome editing of upstream open reading frames","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Genetics","funders":"","keywords":"CRISPR; Biology; Cas9; Genome editing; Transgene; Gene; Translation (biology); Mutant; Open reading frame; Guide RNA; Genetics; Computational biology; Upstream open reading frame; Messenger RNA","score_opus":0.020891704606806435,"score_gpt":0.35319325547725083,"score_spread":0.3323015508704444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3000155195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88334405,0.0024934553,0.029681077,0.00089844345,0.00015912179,0.07990897,0.0004379361,0.00008524846,0.0029917243],"genre_scores_gemma":[0.9902652,0.0000122744,0.004656163,0.00020075345,0.00023097236,0.004248741,0.0003443351,0.00002963295,0.000011931987],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990023,0.00003490676,0.00030994546,0.00031427172,0.00013081537,0.00020779092],"domain_scores_gemma":[0.9996112,0.000022608181,0.000105662715,0.00015476845,0.00003489552,0.00007084914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016624389,0.00015025582,0.00020473117,0.00003409682,0.000030688894,0.000031262633,0.00028479044,0.00033146408,0.0000128984775],"category_scores_gemma":[0.00014486643,0.0001537944,0.000041382857,0.00012513647,0.000013653765,0.000008715143,0.000094860006,0.00029399546,0.0000014355558],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009461833,0.0000264244,0.0047456785,0.000101918675,0.00001914571,0.0000035081962,0.00022754645,0.0008477646,0.99116915,0.000004309101,0.0002656315,0.002494299],"study_design_scores_gemma":[0.0011027671,0.00020407916,0.0021273715,0.00010541823,0.000005870582,0.0000044413428,0.00011048751,0.0016445069,0.9843786,0.00001666243,0.010090111,0.00020969762],"about_ca_topic_score_codex":0.000017856206,"about_ca_topic_score_gemma":0.000011079899,"teacher_disagreement_score":0.10692117,"about_ca_system_score_codex":0.000009780932,"about_ca_system_score_gemma":0.00002721142,"threshold_uncertainty_score":0.6271554},"labels":[],"label_agreement":null},{"id":"W3002281051","doi":"10.1038/s41596-019-0278-8","title":"Isolation of satellite cells and transplantation into mice for lineage tracing in muscle","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"Canadian Institutes of Health Research; National Institutes of Health; Government of Canada; U.S. Department of Health and Human Services","keywords":"Stem cell; Transplantation; Context (archaeology); Biology; Ex vivo; Cell biology; Cellular differentiation; In vivo; Immunology; Medicine; Internal medicine; Genetics","score_opus":0.009672812252498771,"score_gpt":0.2918673367424947,"score_spread":0.28219452448999593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3002281051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.961478,0.00045108644,0.011889318,0.00033453267,0.000024432135,0.025594981,0.000029626739,0.000008591258,0.00018943011],"genre_scores_gemma":[0.9915574,0.000044489014,0.0034754567,0.00036238052,0.000053604257,0.0044239894,0.00007211727,0.00000665904,0.0000039008273],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995855,0.000026386879,0.00012402206,0.00016590433,0.00002932255,0.000068844216],"domain_scores_gemma":[0.9998328,0.000016491857,0.000049530285,0.00004998163,0.00002819497,0.000022985807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000070764756,0.000061414605,0.000082657854,0.000015932786,0.000018261566,0.0000037258976,0.000045114604,0.0002130878,0.0000015254429],"category_scores_gemma":[0.000029392346,0.000060155202,0.00002765406,0.000046761903,0.000020252102,0.000004525295,0.000007762671,0.0000934058,2.3191646e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068426697,0.000021731206,0.0006125633,0.00039360928,0.0000046474074,1.9547807e-7,0.00039457539,0.000060642506,0.9938478,0.000034982764,0.000023771445,0.0039212233],"study_design_scores_gemma":[0.0013125774,0.00039905662,0.009183794,0.000038196555,0.0000064959713,2.8198843e-7,0.000052229658,0.00045241902,0.9841419,0.00019191505,0.0041298266,0.00009133092],"about_ca_topic_score_codex":0.0000048708234,"about_ca_topic_score_gemma":0.000032281867,"teacher_disagreement_score":0.030079402,"about_ca_system_score_codex":0.0000016589632,"about_ca_system_score_gemma":0.000015414395,"threshold_uncertainty_score":0.24530579},"labels":[],"label_agreement":null},{"id":"W3014602217","doi":"10.1038/s41596-020-0301-0","title":"Full-length sequencing of circular DNA viruses and extrachromosomal circular DNA using CIDER-Seq","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":87,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Fonds De La Recherche Scientifique - FNRS; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Extrachromosomal DNA; DNA sequencing; Rolling circle replication; DNA; Sequencing by ligation; Biology; Computational biology; Genome; In vitro recombination; Multiple displacement amplification; Sequence analysis; DNA nanoball sequencing; Genetics; Polymerase chain reaction; Plasmid; Molecular cloning; DNA extraction; DNA polymerase; Complementary DNA; Gene; Genomic library; Base sequence","score_opus":0.04034942459925112,"score_gpt":0.30564247902916836,"score_spread":0.26529305442991724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014602217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98060685,0.000079678684,0.0007452727,0.00021782142,0.00006003969,0.017620835,0.00003343364,0.000057280657,0.00057879946],"genre_scores_gemma":[0.9935118,0.0000024510762,0.003042522,0.0009725904,0.00011752959,0.0023058965,0.00000385623,0.000030054436,0.000013274032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870545,0.000067609,0.00030473105,0.0004293018,0.00022480698,0.00026813225],"domain_scores_gemma":[0.9993885,0.000028943956,0.00017811397,0.00023123439,0.000021605016,0.00015156248],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011906951,0.00020321962,0.0002582022,0.000028353468,0.00014538958,0.00006781131,0.0002207414,0.00025513282,0.0009421394],"category_scores_gemma":[0.00007759806,0.00019410693,0.000102688966,0.00023010027,0.00014995762,0.00041983876,0.00019504927,0.0005280386,0.00003606815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040131035,0.000036773265,0.001055287,0.000112850306,0.000023398325,0.000031295232,0.00038113105,0.00008950504,0.99720764,0.000021558006,0.00010226526,0.0008981369],"study_design_scores_gemma":[0.0008054237,0.00029900664,0.010329995,0.00025775642,0.000063022766,0.00023461408,0.00017585226,0.00153342,0.9557519,0.00013050342,0.029942103,0.00047643227],"about_ca_topic_score_codex":0.00010999363,"about_ca_topic_score_gemma":0.000017541292,"teacher_disagreement_score":0.041455798,"about_ca_system_score_codex":0.00015481708,"about_ca_system_score_gemma":0.000037174126,"threshold_uncertainty_score":0.99997115},"labels":[],"label_agreement":null},{"id":"W3014687364","doi":"10.1038/s41596-020-0313-9","title":"Tutorial: guidance for quantitative confocal microscopy","year":2020,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":401,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University Health Network","funders":"Francis Crick Institute","keywords":"Confocal microscopy; Microscopy; Confocal; Computer science; Computational biology; Nanotechnology; Biology; Optics; Materials science; Physics; Cell biology","score_opus":0.034437221571219236,"score_gpt":0.4614982103708785,"score_spread":0.42706098879965926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014687364","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[3.4441282e-8,0.8839758,0.0050935345,0.00002434072,0.000061388215,0.11006461,0.00012147676,0.00005231326,0.0006064761],"genre_scores_gemma":[1.8897512e-7,0.6788015,0.025568482,0.0002448093,0.0010538191,0.29278415,0.00078890834,0.00010372709,0.0006544219],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99794215,0.00015599033,0.0005781846,0.00086579914,0.00016993342,0.000287971],"domain_scores_gemma":[0.9983867,0.000065658,0.00050214684,0.00065384543,0.00029908377,0.00009259852],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00031546797,0.00049827143,0.0013306245,0.000067385175,0.000064578875,0.00009227378,0.0006806114,0.0015918723,0.000010455582],"category_scores_gemma":[0.00079389854,0.00041981554,0.0009048046,0.00020801333,0.0000893103,0.00000374926,0.00019144567,0.00069254806,0.000019580446],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003244672,0.00014032544,0.0000017076433,0.025955997,0.0009832293,0.000019463878,0.000017453449,1.0519953e-7,0.022206433,0.0012372163,0.41512012,0.5339935],"study_design_scores_gemma":[0.0002639831,0.0004846863,4.568178e-8,0.0026647134,0.00027242186,0.000007172058,0.0000014396902,0.0000017846565,0.03014608,0.00006463335,0.9656693,0.0004237451],"about_ca_topic_score_codex":0.0000021569476,"about_ca_topic_score_gemma":0.0000049483765,"teacher_disagreement_score":0.5505492,"about_ca_system_score_codex":0.00004871101,"about_ca_system_score_gemma":0.00047075655,"threshold_uncertainty_score":0.99982536},"labels":[],"label_agreement":null},{"id":"W3014918672","doi":"10.1038/s41596-020-0307-7","title":"Guidance for quantitative confocal microscopy","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University Health Network","funders":"National Research Foundation; Brain Injury Research Center; Francis Crick Institute; Ira Sohn Research Conference Foundation","keywords":"Confocal microscopy; Confocal; Microscopy; Biology; Biophysics; Computational biology; Cell biology; Optics; Physics","score_opus":0.024869764902192927,"score_gpt":0.4072185601454837,"score_spread":0.38234879524329074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014918672","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002461801,0.0008360581,0.89187545,0.001770947,0.00006931813,0.10198748,0.0002336683,0.00014970927,0.00061554596],"genre_scores_gemma":[0.02239227,0.000009555568,0.8476017,0.006629118,0.00036456352,0.12260793,0.00012696262,0.00006737316,0.00020052465],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902785,0.000027805514,0.00018505887,0.0004327797,0.00008831611,0.00023817268],"domain_scores_gemma":[0.9993889,0.00001608347,0.00009685083,0.00022534661,0.00018712213,0.0000857179],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000097017015,0.00016943226,0.0001630335,0.000013731184,0.000066724686,0.000027201102,0.00030722807,0.00037746876,0.000006492782],"category_scores_gemma":[0.000442258,0.00015945936,0.000087093875,0.00008347612,0.00010389463,0.0000056679755,0.00008340289,0.00025914382,0.000007291474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00066682376,0.000022676253,0.0003340914,0.00007954748,0.000012618253,9.621905e-7,0.00003315486,0.000003077436,0.97430146,0.0015599014,0.022518814,0.00046687882],"study_design_scores_gemma":[0.00041817973,0.0007722856,0.000033609118,0.000036570185,0.0000025700058,0.0000012223752,0.000010936327,0.000040199186,0.6882659,0.00024316984,0.31003803,0.00013730011],"about_ca_topic_score_codex":6.3222e-7,"about_ca_topic_score_gemma":0.0000017546823,"teacher_disagreement_score":0.28751922,"about_ca_system_score_codex":0.000012366243,"about_ca_system_score_gemma":0.00007900042,"threshold_uncertainty_score":0.6502564},"labels":[],"label_agreement":null},{"id":"W3016820392","doi":"10.1038/s41596-020-0325-5","title":"Author Correction: Guidance for quantitative confocal microscopy","year":2020,"lang":"en","type":"erratum","venue":"Nature Protocols","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University Health Network","funders":"","keywords":"Confocal microscopy; Confocal; Microscopy; Computer science; Computational biology; Nanotechnology; Optics; Biology; Physics; Materials science","score_opus":0.02187357455936563,"score_gpt":0.40882603305861115,"score_spread":0.38695245849924553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016820392","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00000416051,0.007192015,0.634726,0.0024018968,0.033532254,0.31036207,0.0016739017,0.0005358413,0.00957187],"genre_scores_gemma":[0.0000196378,0.00007123972,0.364709,0.0027392278,0.0050466824,0.3588394,0.0037756683,0.00030658834,0.2644926],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.997471,0.0000903589,0.00049143273,0.001190799,0.00025927764,0.00049714756],"domain_scores_gemma":[0.998058,0.00003630065,0.00048216,0.0006776653,0.0005986993,0.00014713124],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00022070135,0.0006101359,0.000601341,0.00006978267,0.00018124463,0.00009512916,0.0007527178,0.0034092856,0.000017577055],"category_scores_gemma":[0.0011524862,0.0006064061,0.00031640774,0.00018578376,0.00023825049,0.0000083161285,0.00022044539,0.0022680287,0.00001662219],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00066725706,0.00003729519,0.00001311595,0.00031869198,0.000049373964,0.000003348665,0.000019318502,8.989345e-7,0.27907935,0.00018688048,0.7191225,0.00050195964],"study_design_scores_gemma":[0.00031231847,0.0011229421,0.000006627113,0.00046758412,0.00001721931,0.000007497537,0.0000114260865,0.00004865239,0.38613498,0.0001660694,0.61130226,0.00040239113],"about_ca_topic_score_codex":0.0000031615766,"about_ca_topic_score_gemma":0.000018985704,"teacher_disagreement_score":0.270017,"about_ca_system_score_codex":0.000088327244,"about_ca_system_score_gemma":0.00066468347,"threshold_uncertainty_score":0.99963874},"labels":[],"label_agreement":null},{"id":"W3033785808","doi":"10.1038/s41596-020-0327-3","title":"Analysis of task-based functional MRI data preprocessed with fMRIPrep","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Functional Brain Connectivity Studies","field":"Neuroscience","cited_by":322,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of Mental Health","keywords":"Computer science; Preprocessor; Functional magnetic resonance imaging; Workflow; Software; Artificial intelligence; Identification (biology); Pattern recognition (psychology); Protocol (science); Data mining; Task (project management); Machine learning; Neuroscience; Database; Medicine","score_opus":0.08955149778786851,"score_gpt":0.33714146831190006,"score_spread":0.24758997052403153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033785808","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.066950135,0.00034112594,0.16753599,0.2149501,0.0006471155,0.516402,0.007631107,0.002893713,0.022648694],"genre_scores_gemma":[0.95676243,3.632075e-7,0.0010506468,0.012125249,0.00012555254,0.029761534,0.000079844656,0.000023375003,0.000070990434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99749374,0.00011515314,0.00024419726,0.001119049,0.00083297834,0.00019489926],"domain_scores_gemma":[0.99667037,0.0019156792,0.00023490102,0.00086735695,0.00022306723,0.000088655164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026150554,0.00019335731,0.00037857846,0.00016770039,0.00013626025,0.000042546275,0.0006635227,0.00014085534,0.00015720732],"category_scores_gemma":[0.008194203,0.00014952182,0.000089602676,0.0025935927,0.00015633453,0.00030842,0.0002506154,0.000489573,0.000014017888],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016907332,0.0022549995,0.1870308,0.002133177,0.0033115153,0.000109501474,0.00081866025,0.101478055,0.5572754,0.0039828257,0.121670045,0.0030276887],"study_design_scores_gemma":[0.005073285,0.0016930556,0.06804815,0.00018838744,0.0012366868,0.000008150923,0.0000723407,0.131053,0.60580283,0.00032768774,0.18548647,0.0010099752],"about_ca_topic_score_codex":0.0000047086523,"about_ca_topic_score_gemma":0.000027726555,"teacher_disagreement_score":0.8898123,"about_ca_system_score_codex":0.000027002608,"about_ca_system_score_gemma":0.00023937074,"threshold_uncertainty_score":0.98098177},"labels":[],"label_agreement":null},{"id":"W3093649979","doi":"10.1038/s41596-020-0395-4","title":"Generation of oligodendrocytes and establishment of an all-human myelinating platform from human pluripotent stem cells","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"","keywords":"Induced pluripotent stem cell; SOX10; Oligodendrocyte; Stem cell; Biology; Neural stem cell; Cell biology; Myelin; Myelin basic protein; Viral vector; Embryonic stem cell; Molecular biology; Neuroscience; Genetics; Central nervous system; Gene; Recombinant DNA","score_opus":0.06076287561531348,"score_gpt":0.34445322955170365,"score_spread":0.2836903539363902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093649979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98352206,0.0002564409,0.0001301648,0.00007398584,0.000017143166,0.015714716,0.00008966183,0.000011633546,0.00018417009],"genre_scores_gemma":[0.99398607,0.000010951001,0.001565445,0.00012001415,0.00026411575,0.0037151785,0.0002579649,0.000025991874,0.000054278087],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99844414,0.000075963806,0.0004188291,0.00045536508,0.00039327767,0.00021244101],"domain_scores_gemma":[0.9990981,0.000011657306,0.00024736478,0.00031063746,0.00018444704,0.00014778745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024114839,0.00017823477,0.00025523533,0.00004699739,0.00007694509,0.000041195028,0.00030375825,0.00035037927,0.000015139059],"category_scores_gemma":[0.000022194028,0.00016533137,0.00006496494,0.00007931099,0.000067051835,0.000018517832,0.00023935968,0.00028764657,8.788664e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088113324,0.00009587695,0.00037960094,0.0002118208,0.00005617767,0.0000035243297,0.00019761203,0.00008877444,0.9969963,0.00007673625,0.00021874897,0.001586731],"study_design_scores_gemma":[0.0010129493,0.0009860137,0.0004324519,0.00006105861,0.000014293484,0.0000013058087,0.00006913,0.0010089184,0.99328357,0.000038413687,0.0029358878,0.0001560127],"about_ca_topic_score_codex":0.000043789074,"about_ca_topic_score_gemma":0.00003683893,"teacher_disagreement_score":0.011999538,"about_ca_system_score_codex":0.000018920346,"about_ca_system_score_gemma":0.00004715832,"threshold_uncertainty_score":0.6742017},"labels":[],"label_agreement":null},{"id":"W3106604636","doi":"10.1038/s41596-020-00407-y","title":"Radiosynthesis of [18F]SiFAlin-TATE for clinical neuroendocrine tumor positron emission tomography","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Neuroendocrine Tumor Research Advances","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Radiosynthesis; Chemistry; Combinatorial chemistry; Peptide; Neuroendocrine tumors; Radiochemistry; Positron emission tomography; Nuclear medicine; Biochemistry; Medicine","score_opus":0.06360880692823415,"score_gpt":0.444846756722221,"score_spread":0.38123794979398684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3106604636","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.39277297,0.0015706238,0.00039740762,0.062622026,0.0004162515,0.5385155,0.00038389766,0.00088070444,0.0024406249],"genre_scores_gemma":[0.88131195,0.00008546361,0.015980283,0.007845578,0.0011875413,0.09283436,0.000047338155,0.0001989833,0.00050850835],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99691045,0.00021902232,0.0008456263,0.00072470796,0.0007125516,0.000587618],"domain_scores_gemma":[0.9974724,0.00069053366,0.00032214643,0.0005181397,0.00035276468,0.00064400065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002586599,0.00031102612,0.00088212977,0.00017347449,0.00007400408,0.000025422994,0.00041051037,0.000025387291,0.000066664215],"category_scores_gemma":[0.0042423275,0.00024289056,0.00056047516,0.00057948974,0.00016859558,0.00013818138,0.00013957417,0.0012979897,0.000009133189],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0662292,0.003593808,0.22571191,0.012933164,0.0006408694,0.013931025,0.00008272836,0.00001211725,0.4984052,0.00077574025,0.13546167,0.042222556],"study_design_scores_gemma":[0.0066713067,0.0067258724,0.005495046,0.00051429984,0.00010851575,0.0007542756,0.000019638783,0.0002763938,0.65182984,0.00026343926,0.3270773,0.0002641051],"about_ca_topic_score_codex":0.0000026891605,"about_ca_topic_score_gemma":7.720306e-7,"teacher_disagreement_score":0.48853898,"about_ca_system_score_codex":0.000022368165,"about_ca_system_score_gemma":0.00017255089,"threshold_uncertainty_score":0.99047893},"labels":[],"label_agreement":null},{"id":"W3107103270","doi":"10.1038/s41596-021-00514-4","title":"Extraction of nuclei from archived postmortem tissues for single-nucleus sequencing applications","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University; Douglas Mental Health University Institute","funders":"Medical Research Council; Government of Canada","keywords":"Single-cell analysis; Computational biology; Nucleus; Protocol (science); Chromatin; Computer science; Biology; DNA; Cell biology; Cell; Genetics; Pathology; Medicine","score_opus":0.028032568473501086,"score_gpt":0.3197343980284225,"score_spread":0.2917018295549214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3107103270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.737479,0.001844608,0.14219402,0.00053354725,0.0004149273,0.10847292,0.0013304441,0.00013236649,0.0075981924],"genre_scores_gemma":[0.9259678,0.000013488315,0.04362649,0.00026281644,0.0006001689,0.02842231,0.00076691055,0.000045703542,0.00029431953],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991936,0.0000330391,0.00021493241,0.00031785909,0.00009955741,0.00014102236],"domain_scores_gemma":[0.9993064,0.000034017314,0.00011048941,0.00030356259,0.00019902967,0.000046504352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000627273,0.000117021475,0.00015106403,0.000020374035,0.000066849076,0.000026888889,0.0001372344,0.00029669693,0.000013495386],"category_scores_gemma":[0.00006639668,0.00011989756,0.000109777444,0.00005396842,0.000036541966,0.0000051660077,0.000027828744,0.00016982244,0.0000016412813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014826385,0.00013490378,0.00047615875,0.000071896895,0.000040551884,0.0000016277891,0.000052511863,0.000011750251,0.99049634,0.00015427925,0.00015068373,0.008261033],"study_design_scores_gemma":[0.0005318124,0.0001527796,0.0004265128,0.000050648636,0.000018968787,0.000007704655,0.00003784043,0.00004766896,0.85543954,0.0006207943,0.14254814,0.000117557654],"about_ca_topic_score_codex":0.000019725605,"about_ca_topic_score_gemma":0.00005705704,"teacher_disagreement_score":0.18848883,"about_ca_system_score_codex":0.000020360625,"about_ca_system_score_gemma":0.00010765907,"threshold_uncertainty_score":0.48892805},"labels":[],"label_agreement":null},{"id":"W3117195455","doi":"10.1038/s41596-020-00423-y","title":"An unbiased method for evaluating the genome-wide specificity of base editors in rice","year":2020,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Genetics","funders":"","keywords":"Genome; Computational biology; Base (topology); Transformation (genetics); Biology; Pipeline (software); Reference genome; Computer science; Genetics; Gene; Mathematics","score_opus":0.031153656603107868,"score_gpt":0.4252165852204996,"score_spread":0.39406292861739173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3117195455","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24980845,0.00052294094,0.618209,0.0020134805,0.00040436676,0.1285136,0.00014076888,0.000041736184,0.0003456437],"genre_scores_gemma":[0.86647207,0.0000024892618,0.09241843,0.0010281426,0.0029050023,0.03703069,0.00008002631,0.00004223833,0.000020939495],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914575,0.000094451585,0.00020366142,0.00026725134,0.0001347708,0.00015410445],"domain_scores_gemma":[0.99943626,0.00007986625,0.00006998848,0.0002569027,0.000099677156,0.000057325757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062834617,0.00010981137,0.0001355816,0.000019673585,0.000031710955,0.000012916981,0.0002501948,0.00019649566,0.000006729006],"category_scores_gemma":[0.00065469166,0.000084947416,0.00006807035,0.00013482217,0.000016609127,0.0000024838805,0.000040902214,0.00022312516,3.9682607e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025262072,0.00003608677,0.00073672546,0.00012131751,0.00001224819,4.638741e-7,0.00012108399,0.005437509,0.9912405,0.000012095604,0.0007073618,0.0013219977],"study_design_scores_gemma":[0.0009578992,0.0009807169,0.0048400373,0.000021806436,0.000011809259,7.7557496e-7,0.00009042271,0.011620942,0.95179105,0.000057503737,0.029473707,0.00015332234],"about_ca_topic_score_codex":0.000004653021,"about_ca_topic_score_gemma":0.00000721868,"teacher_disagreement_score":0.6166636,"about_ca_system_score_codex":0.000008271448,"about_ca_system_score_gemma":0.000056185774,"threshold_uncertainty_score":0.3464055},"labels":[],"label_agreement":null},{"id":"W3120896887","doi":"10.1038/s41596-020-00452-7","title":"Reaction screening in multiwell plates: high-throughput optimization of a Buchwald–Hartwig amination","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Innovative Microfluidic and Catalytic Techniques Innovation","field":"Engineering","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Amination; Computer science; Throughput; Reagent; Consumables; Process engineering; Chemical space; Biochemical engineering; Combinatorial chemistry; Nanotechnology; Materials science; Chemistry; Catalysis; Organic chemistry; Drug discovery; Engineering","score_opus":0.012344557403776697,"score_gpt":0.2831515287578195,"score_spread":0.2708069713540428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3120896887","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011148919,0.0001058503,0.97031605,0.00009600091,0.00012761804,0.016117463,0.0000222852,0.00033235407,0.0017334421],"genre_scores_gemma":[0.90678453,0.000009534372,0.08009913,0.000084679465,0.0000837879,0.012391057,0.0004134558,0.000045727793,0.00008806932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989472,0.00003112597,0.00044562056,0.00021082026,0.00020212708,0.00016309247],"domain_scores_gemma":[0.99920905,0.00003384262,0.0001160397,0.00021520793,0.00041150468,0.000014363482],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030616112,0.00014990228,0.00020181216,0.00023117827,0.00002857166,0.000019908068,0.000094125025,0.00039905665,0.000033833814],"category_scores_gemma":[0.00013354886,0.00016485181,0.00003146325,0.0011880138,0.000026480053,0.00031134326,0.000029558601,0.00054991385,0.000002724604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007409111,0.00014767976,0.001032218,0.00050596974,0.000041500334,0.00001917034,0.00039195397,0.020808084,0.9262028,0.010470541,0.0018488175,0.03845721],"study_design_scores_gemma":[0.0007626537,0.000034468285,0.0021335909,0.00037743256,0.000004895166,0.000008492266,0.000059798578,0.024134524,0.9667814,0.0004059139,0.0051207663,0.00017609421],"about_ca_topic_score_codex":0.000012426132,"about_ca_topic_score_gemma":0.0000025461266,"teacher_disagreement_score":0.89563566,"about_ca_system_score_codex":0.00013851697,"about_ca_system_score_gemma":0.000035483565,"threshold_uncertainty_score":0.67224616},"labels":[],"label_agreement":null},{"id":"W3122118726","doi":"10.1038/s41596-020-00469-y","title":"Revealing nascent RNA processing dynamics with nano-COP","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; National Human Genome Research Institute; Ontario Institute for Cancer Research; U.S. Department of Health and Human Services","keywords":"Rna processing; RNA; Nano-; Dynamics (music); Computational biology; Biology; Nanotechnology; Physics; Genetics; Materials science; Gene","score_opus":0.007912696164328357,"score_gpt":0.2819383712700323,"score_spread":0.2740256751057039,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3122118726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.45513722,0.013984844,0.18017183,0.006963166,0.0010471842,0.289929,0.00021214441,0.0005579981,0.051996596],"genre_scores_gemma":[0.8925691,0.000027003773,0.050301876,0.0013947942,0.0006729265,0.051072426,0.00017642825,0.00010432016,0.0036810976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876535,0.00007671447,0.0001789651,0.00045722997,0.00024308263,0.00027868294],"domain_scores_gemma":[0.9991438,0.000006924569,0.0001162252,0.00039666385,0.00025570497,0.00008069012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020693305,0.00019388,0.00017544546,0.000023484503,0.00013659595,0.00008543488,0.00020267657,0.00045121033,0.000023056826],"category_scores_gemma":[0.00010369529,0.00015695585,0.000067862384,0.00015540037,0.000030600033,0.0000060134157,0.00008463331,0.0002790555,0.0000052851515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018029372,0.00006558317,0.00022968437,0.00016851988,0.000029782077,0.000028973209,0.000021111751,0.00001206945,0.9696904,0.00043653627,0.00025819265,0.028878849],"study_design_scores_gemma":[0.00051639194,0.00017976113,0.00005937442,0.00034432855,0.000011386223,0.00006243233,0.00004147086,0.00005149006,0.95242155,0.00022657787,0.045840383,0.00024484494],"about_ca_topic_score_codex":0.0000017530228,"about_ca_topic_score_gemma":0.000030064795,"teacher_disagreement_score":0.4374319,"about_ca_system_score_codex":0.00003159982,"about_ca_system_score_gemma":0.00027232646,"threshold_uncertainty_score":0.6400474},"labels":[],"label_agreement":null},{"id":"W3124859439","doi":"10.1038/s41596-020-00456-3","title":"τ-SGA: synthetic genetic array analysis for systematically screening and quantifying trigenic interactions in yeast","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; University of Toronto","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; Canadian Institutes of Health Research; Government of Canada; U.S. Department of Health and Human Services; National Institutes of Health; National Science Foundation","keywords":"Computer science; Computational biology; Mating of yeast; Pipeline (software); High-throughput screening; Throughput; Genetic screen; Biology; Mutant; Data mining; Genetics; Gene; Wireless","score_opus":0.0504593460282126,"score_gpt":0.39480033472344256,"score_spread":0.34434098869522994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3124859439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.69209146,0.005893902,0.2231764,0.0010129802,0.0001968627,0.076059654,0.00022466638,0.00004394454,0.0013001179],"genre_scores_gemma":[0.9575734,0.000020496325,0.016706781,0.00007061696,0.00011610329,0.024964528,0.000057462898,0.000022602437,0.0004680075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985866,0.00014269003,0.00031883657,0.00047594417,0.0001888637,0.00028708111],"domain_scores_gemma":[0.99918735,0.00006212375,0.00007090942,0.00035113536,0.00023034083,0.00009813051],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031997805,0.00014933496,0.00027434883,0.00015853893,0.00008929595,0.00009388513,0.00015629841,0.00019893689,0.000022215869],"category_scores_gemma":[0.00045008856,0.00013531187,0.00017160978,0.00045177553,0.000039130628,0.0000040967125,0.00009312855,0.0003012056,0.0000029545415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018517581,0.00011027356,0.020084547,0.00057852943,0.0003662039,0.000011466814,0.000039366165,0.00034893234,0.9754141,0.00011216459,0.00006721295,0.0026820304],"study_design_scores_gemma":[0.0025628787,0.0003975795,0.03931245,0.0008544336,0.000330869,0.00012505506,0.00037090303,0.006219274,0.92021775,0.00024941456,0.028666023,0.0006933625],"about_ca_topic_score_codex":0.0000062402664,"about_ca_topic_score_gemma":0.00035369073,"teacher_disagreement_score":0.26548192,"about_ca_system_score_codex":0.00001579354,"about_ca_system_score_gemma":0.00010850324,"threshold_uncertainty_score":0.5517858},"labels":[],"label_agreement":null},{"id":"W3135523943","doi":"10.1038/s41596-020-00475-0","title":"The maternal serum metabolome by multisegment injection-capillary electrophoresis-mass spectrometry: a high-throughput platform and standardized data workflow for large-scale epidemiological studies","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Health Sciences; Impact; University of Toronto; Population Health Research Institute; McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Genome Canada","keywords":"Metabolome; Metabolite; Metabolomics; Chromatography; Mass spectrometry; Capillary electrophoresis; Population; Medicine; Chemistry; Biology; Internal medicine","score_opus":0.02600437303160519,"score_gpt":0.3460235526048807,"score_spread":0.3200191795732755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3135523943","genre_codex":"review","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.34780556,0.47818252,0.053923156,0.010164919,0.0019175846,0.09884966,0.008646442,0.0002024439,0.00030771384],"genre_scores_gemma":[0.3547984,0.109888785,0.36066264,0.005004877,0.0045159096,0.15456131,0.0036973564,0.0003611274,0.0065095914],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99713576,0.00019705249,0.00051468203,0.0010675066,0.00032086798,0.0007641591],"domain_scores_gemma":[0.99810266,0.00025605323,0.0002521149,0.00094170653,0.0003298276,0.00011761218],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015733473,0.0004142202,0.000765276,0.000047991103,0.0006775463,0.00013897697,0.00051702873,0.00045040966,0.000015423599],"category_scores_gemma":[0.0014343759,0.0002662384,0.00015675671,0.00027770313,0.00014911251,0.00001958456,0.0008419682,0.0005191652,0.0000012517393],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028318407,0.00028708077,0.0070403097,0.000256819,0.003803826,0.000018538789,0.000053576896,0.0000073792007,0.825755,0.004741174,0.15085694,0.004347491],"study_design_scores_gemma":[0.0034632767,0.0009043855,0.0026810253,0.00004494369,0.00016764241,0.000041856525,0.00022817355,0.00008602528,0.3553842,0.005424493,0.6310997,0.00047428758],"about_ca_topic_score_codex":0.000004348939,"about_ca_topic_score_gemma":0.00009181507,"teacher_disagreement_score":0.48024273,"about_ca_system_score_codex":0.00006156038,"about_ca_system_score_gemma":0.000109900815,"threshold_uncertainty_score":0.99997896},"labels":[],"label_agreement":null},{"id":"W3138498621","doi":"10.1038/s41596-020-00486-x","title":"Spooling electrochemiluminescence spectroscopy: development, applications and beyond","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canada Foundation for Innovation","keywords":"Electrochemiluminescence; Luminophore; Spectroscopy; Photoluminescence; Electron transfer; Chemiluminescence; Electrochemical cell; Materials science; Electrolyte; Luminescence; Chemistry; Electrode; Computer science; Nanotechnology; Analytical Chemistry (journal); Optoelectronics; Photochemistry; Physics","score_opus":0.005911779295942685,"score_gpt":0.3105362464099203,"score_spread":0.3046244671139776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3138498621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5868257,0.011908015,0.24032877,0.0031230147,0.0001332454,0.12632295,0.00008318427,0.0009614061,0.030313676],"genre_scores_gemma":[0.6840163,0.00010377392,0.29430968,0.0011819239,0.00035071038,0.018870149,0.00023886628,0.000031294276,0.00089733244],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991777,0.000016632808,0.00013820558,0.0003894963,0.00009768226,0.00018028704],"domain_scores_gemma":[0.99947286,0.000005602799,0.00006116793,0.00025603455,0.00015119491,0.000053129905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008085053,0.00012767692,0.00011587714,0.000025568765,0.000109618544,0.00003380877,0.00009356919,0.0002462206,0.000001378953],"category_scores_gemma":[0.000052033345,0.00011825294,0.00003646186,0.00017006889,0.000046878857,0.0000030969873,0.00008342858,0.00021452052,0.0000011385117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017765873,0.000033750362,0.0008131013,0.000023277298,0.000018583083,0.0000024126869,0.000004525422,8.154058e-8,0.9944216,0.00012677563,0.00032275688,0.0042153476],"study_design_scores_gemma":[0.00011229171,0.00002651725,0.00012350542,0.000017474256,0.000006529785,0.00003209474,0.000009084534,0.0000029827063,0.8314655,0.00017903445,0.16789478,0.00013021477],"about_ca_topic_score_codex":1.9004078e-7,"about_ca_topic_score_gemma":0.000008279249,"teacher_disagreement_score":0.16757202,"about_ca_system_score_codex":0.00001342426,"about_ca_system_score_gemma":0.00010703047,"threshold_uncertainty_score":0.48222148},"labels":[],"label_agreement":null},{"id":"W3146917470","doi":"10.1038/s41596-020-00490-1","title":"A well plate–based multiplexed platform for incorporation of organoids into an organ-on-a-chip system with a perfusable vasculature","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":97,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; McMaster University; University of Toronto","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Organoid; Scaffold; Tissue engineering; Microfluidics; Stem cell; Biomedical engineering; Computer science; Nanotechnology; Cell biology; Biology; Materials science; Medicine","score_opus":0.01634263777480202,"score_gpt":0.2974379380719494,"score_spread":0.28109530029714735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3146917470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5751277,0.00026845402,0.07816776,0.00060775224,0.00065352314,0.33568645,0.00025479635,0.002829452,0.006404086],"genre_scores_gemma":[0.9122722,4.6406763e-7,0.04744591,0.000057783964,0.00017186163,0.03970433,0.00016977555,0.0001027648,0.0000749193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99808097,0.000053934662,0.0003530025,0.000398889,0.0007370615,0.00037613712],"domain_scores_gemma":[0.9982616,0.0002479973,0.000091537935,0.0006178325,0.00059171946,0.00018936276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057999755,0.0002649597,0.0003800892,0.00017027279,0.00010694826,0.00009108827,0.0003359675,0.000750579,0.000058067184],"category_scores_gemma":[0.00041435167,0.00021018289,0.00008343479,0.0007656482,0.00006737076,0.00018222994,0.00004520363,0.0010327683,0.00001479868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003592444,0.0011368936,0.006934342,0.030903138,0.0005870776,0.00016931034,0.0013802043,0.047426194,0.87914956,0.01337624,0.0031009372,0.012243643],"study_design_scores_gemma":[0.0044045015,0.0007708926,0.00067176134,0.0016005216,0.000022507102,0.000013481987,0.00014341272,0.15757607,0.8258882,0.0002637663,0.008245699,0.00039913767],"about_ca_topic_score_codex":0.000008619518,"about_ca_topic_score_gemma":0.000058340956,"teacher_disagreement_score":0.33714443,"about_ca_system_score_codex":0.00023475887,"about_ca_system_score_gemma":0.00033473835,"threshold_uncertainty_score":0.85710096},"labels":[],"label_agreement":null},{"id":"W3147795917","doi":"10.1038/s41596-021-00500-w","title":"Assessing biofilm inhibition and immunomodulatory activity of small amounts of synthetic host defense peptides synthesized using SPOT-array technology","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Michael Smith Health Research BC; Government of Canada","keywords":"Peptide; Computational biology; Host (biology); Antimicrobial peptides; Protocol (science); Antimicrobial; Combinatorial chemistry; High-throughput screening; Biofilm; Biology; Chemistry; Bioinformatics; Microbiology; Medicine; Biochemistry; Bacteria; Genetics","score_opus":0.02039710501061395,"score_gpt":0.28571760545499153,"score_spread":0.2653205004443776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3147795917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99161863,0.00081983086,0.00034870018,0.00011564119,0.0000919651,0.006711744,0.000054419877,0.00005130474,0.00018774295],"genre_scores_gemma":[0.9956013,0.000016761443,0.0032802783,0.00003061715,0.000016405367,0.0009415746,0.0000106217,0.000028399845,0.00007402888],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985969,0.0002493747,0.0003860644,0.0004018224,0.000052505435,0.0003133322],"domain_scores_gemma":[0.99865633,0.00021017395,0.00048121938,0.00037407855,0.0002608939,0.00001730478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030671942,0.00025462318,0.00064316415,0.000245076,0.00017463189,0.00003566079,0.00012606513,0.0009775346,0.000056904955],"category_scores_gemma":[0.00031749828,0.00023837957,0.00013659989,0.00028931754,0.0007147053,0.00025637573,0.00014295128,0.0007602769,0.0000034760915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002433081,0.0002354169,0.0024997215,0.0003627994,0.0001240036,0.0000105315075,0.00008836322,0.0000028282798,0.9930001,0.0004271058,0.00001178157,0.0029940312],"study_design_scores_gemma":[0.0008979164,0.00010314238,0.0053522917,0.0012809476,0.000063268584,0.00022893088,0.00032883426,0.0000051805337,0.99081707,0.00033248457,0.00036717276,0.00022278717],"about_ca_topic_score_codex":0.000045280944,"about_ca_topic_score_gemma":0.000014178781,"teacher_disagreement_score":0.005770169,"about_ca_system_score_codex":0.00005028533,"about_ca_system_score_gemma":0.00019967422,"threshold_uncertainty_score":0.9720837},"labels":[],"label_agreement":null},{"id":"W3155613736","doi":"10.1038/s41596-021-00495-4","title":"Measuring the elastic modulus of soft culture surfaces and three-dimensional hydrogels using atomic force microscopy","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Cellular Mechanics and Interactions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":159,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Biotechnology and Biological Sciences Research Council; Rosetrees Trust; Research Councils UK; Leverhulme Trust; Wellcome Trust; Wellcome","keywords":"Self-healing hydrogels; Stiffness; Atomic force microscopy; Force spectroscopy; Elastic modulus; Materials science; Biomedical engineering; Nanotechnology; Soft materials; Tissue engineering; Biological system; Computer science; Composite material; Polymer chemistry; Engineering","score_opus":0.016154052659158796,"score_gpt":0.29303984534203426,"score_spread":0.27688579268287544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3155613736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98572654,0.002663965,0.0037361027,0.000085071355,0.00013378928,0.0075384392,0.00003003353,0.0000071850195,0.00007890362],"genre_scores_gemma":[0.9956907,0.000008271394,0.0023602154,0.00013898812,0.00009329158,0.0013494714,0.000027479322,0.000019241364,0.00031231344],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992515,0.000041839423,0.000160184,0.00026265756,0.00013717204,0.00014664787],"domain_scores_gemma":[0.9994119,0.00001313953,0.000097375356,0.00024958115,0.00018919705,0.00003884035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012562424,0.00012551635,0.00013075302,0.000015008299,0.00013159512,0.000035128367,0.00011518575,0.00024558962,0.000013032383],"category_scores_gemma":[0.00008963023,0.00009123101,0.00008150879,0.00007762975,0.00004130306,0.000005945891,0.00014648338,0.00028071235,9.291518e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049549,0.000033284883,0.00029381234,0.000040126317,0.000048993774,0.0000022382885,0.000020798481,0.0003154958,0.99871135,0.00014838653,0.00013439353,0.00020155175],"study_design_scores_gemma":[0.000343843,0.00007033127,0.00010565024,0.000111611684,0.000021496822,0.00007997348,0.000014575614,0.007104036,0.9814025,0.0005915487,0.010042235,0.00011220771],"about_ca_topic_score_codex":0.000007981334,"about_ca_topic_score_gemma":0.000045046178,"teacher_disagreement_score":0.01730888,"about_ca_system_score_codex":0.000012161551,"about_ca_system_score_gemma":0.00010912963,"threshold_uncertainty_score":0.37202927},"labels":[],"label_agreement":null},{"id":"W3155756166","doi":"10.1038/s41596-020-00489-8","title":"Fabrication, characterization and applications of graphene electronic tattoos","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Advanced Sensor and Energy Harvesting Materials","field":"Engineering","cited_by":118,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Office of Naval Research; U.S. Department of Defense; National Science Foundation","keywords":"Graphene; Fabrication; Characterization (materials science); Nanotechnology; Materials science; Computational biology; Biology; Medicine; Pathology","score_opus":0.005853895915745434,"score_gpt":0.2524816072119063,"score_spread":0.2466277112961609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3155756166","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11100321,0.00092803873,0.82410026,0.0002059847,0.00020435402,0.058542874,0.00013797834,0.0010532244,0.0038240629],"genre_scores_gemma":[0.9190161,0.00016516565,0.0038662683,0.00006943744,0.0002338231,0.07606554,0.00025600972,0.00004691978,0.00028068328],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995531,0.00001446404,0.00014586902,0.00011192459,0.00006449761,0.000110150475],"domain_scores_gemma":[0.99964654,0.00001419749,0.000039775856,0.00014916206,0.00012553712,0.000024793302],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043333876,0.00007202363,0.0001079318,0.000057428886,0.000031736785,0.000016822723,0.000047863716,0.00010092244,0.000017812992],"category_scores_gemma":[0.00003432594,0.00007445896,0.000015223136,0.0003329524,0.000015708532,0.00008089184,0.000010409884,0.00011840319,0.0000016927241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004522689,0.000016503414,0.00029801056,0.0001894475,0.00001385091,3.4689398e-7,0.000026489646,0.0005546625,0.97650474,0.009760975,0.000045675202,0.012584761],"study_design_scores_gemma":[0.00027650583,0.00001795331,0.007019591,0.000057046516,0.000009613256,0.000009545626,0.0000090666435,0.00035303624,0.8430468,0.004028448,0.14501692,0.00015550229],"about_ca_topic_score_codex":4.1819638e-7,"about_ca_topic_score_gemma":0.0000014044837,"teacher_disagreement_score":0.820234,"about_ca_system_score_codex":0.00001016146,"about_ca_system_score_gemma":0.000013701087,"threshold_uncertainty_score":0.30363485},"labels":[],"label_agreement":null},{"id":"W3157420610","doi":"10.1038/s41596-021-00515-3","title":"Microtiter plate assays to assess antibiofilm activity against bacteria","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":267,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biofilm; Microtiter plate; Crystal violet; Microbiology; Plate reader; Tetrazolium chloride; Formazan; Bacteria; Resazurin; Chemistry; Biology; Biochemistry; Chromatography; Medicine","score_opus":0.021032285760301327,"score_gpt":0.3153547028852563,"score_spread":0.294322417124955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157420610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98474944,0.000033928973,0.00008955531,0.00044919792,0.00033760027,0.012451497,0.00011715645,0.000031715892,0.0017399008],"genre_scores_gemma":[0.9755186,0.000021021679,0.014284461,0.003619665,0.0011127979,0.003832277,0.00035563944,0.00007533736,0.0011802254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985414,0.00012144857,0.00019012585,0.0006078705,0.00015301589,0.00038609837],"domain_scores_gemma":[0.99896866,0.000010830367,0.00008998068,0.00054711377,0.00022698051,0.00015640956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015465607,0.0002513039,0.00025074297,0.000038437523,0.00012666195,0.00013243167,0.00018691136,0.00069907756,0.00003662515],"category_scores_gemma":[0.0001329653,0.00023649089,0.00013299818,0.00017004366,0.000034665736,0.000010850639,0.00026133555,0.0003876786,0.00003819957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022747509,0.00008836166,0.0010684446,0.00003598592,0.000040387007,0.000048871338,0.000011793063,0.0000018464244,0.98965037,0.000014749339,0.0053553283,0.003456392],"study_design_scores_gemma":[0.00038224275,0.0000948874,0.007102294,0.000053638818,0.0000033954595,0.000042512358,0.000002803032,0.0000026860566,0.71266764,0.0000016221758,0.27941334,0.00023292245],"about_ca_topic_score_codex":0.0000031954767,"about_ca_topic_score_gemma":0.000020813814,"teacher_disagreement_score":0.27698272,"about_ca_system_score_codex":0.000022195316,"about_ca_system_score_gemma":0.00017585159,"threshold_uncertainty_score":0.9643819},"labels":[],"label_agreement":null},{"id":"W3164910276","doi":"10.1038/s41596-021-00529-x","title":"BAR-Seq clonal tracking of gene-edited cells","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Horizon 2020 Framework Programme; Ministero dell’Istruzione, dell’Università e della Ricerca; Louis-Jeantet Foundation; European Commission; Ministero della Salute; Fondazione Telethon; E-Rare","keywords":"Computational biology; Biology; Genome editing; Gene; Pipeline (software); Genome; Computer science; Genetics","score_opus":0.008424864521099248,"score_gpt":0.33659152801541026,"score_spread":0.328166663494311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3164910276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78296536,0.009752427,0.096901774,0.00094273704,0.0020297104,0.09334039,0.0004347626,0.00017949089,0.013453335],"genre_scores_gemma":[0.9733021,0.000021871521,0.01651567,0.00030088567,0.0009351761,0.007946299,0.00014630398,0.000043201668,0.00078849075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999198,0.000026016882,0.0001835669,0.0002614281,0.00015499567,0.00017598679],"domain_scores_gemma":[0.99941015,0.000009340712,0.000049992825,0.00029533927,0.00017997406,0.000055188277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010083696,0.000121546975,0.00013757494,0.000023238095,0.000026170936,0.000015658232,0.00014101215,0.00034904238,0.00005243621],"category_scores_gemma":[0.00007165575,0.00012063876,0.0001027447,0.000103137696,0.000022679948,0.000001951141,0.00005677137,0.0002273842,0.0000030857611],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003129789,0.000045229,0.00064469135,0.00007575584,0.000029044004,0.000009166235,0.00001639725,0.0002763914,0.99595356,0.000051299154,0.0015977651,0.0012693977],"study_design_scores_gemma":[0.00042336993,0.00007431572,0.001688695,0.000036154077,0.0000075049816,0.00001922423,0.000012515586,0.00004417326,0.92441463,0.000027937453,0.07312594,0.00012551468],"about_ca_topic_score_codex":8.238145e-7,"about_ca_topic_score_gemma":0.0000036750225,"teacher_disagreement_score":0.19033672,"about_ca_system_score_codex":0.0000061179426,"about_ca_system_score_gemma":0.00008745377,"threshold_uncertainty_score":0.4919506},"labels":[],"label_agreement":null},{"id":"W3165190053","doi":"10.1038/s41596-021-00534-0","title":"Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods","year":2021,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":240,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Toronto General Hospital; University of Toronto","funders":"","keywords":"Workflow; Computer science; Annotation; Software; Variety (cybernetics); World Wide Web; Database; Artificial intelligence; Programming language","score_opus":0.17657104170889842,"score_gpt":0.5010547193063899,"score_spread":0.32448367759749147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3165190053","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000022402219,0.9387968,0.007908394,0.00002146554,0.0009359722,0.05171213,0.00038598705,0.00012775171,0.00008908448],"genre_scores_gemma":[0.0000026718774,0.4782961,0.46707347,0.0003919252,0.003461779,0.04786795,0.0020151446,0.00038160125,0.00050933805],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99645424,0.00050719565,0.0011540095,0.0011250172,0.0002185613,0.00054096535],"domain_scores_gemma":[0.99798423,0.00013052666,0.0005150114,0.00054000196,0.00067976443,0.00015047702],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0009629199,0.0008008905,0.0017312402,0.00013268336,0.00019544433,0.00021429542,0.00041896818,0.0023783022,0.000005436574],"category_scores_gemma":[0.0006230632,0.00070811674,0.0007493676,0.00024414712,0.00008485384,0.000010078976,0.000105121726,0.0007554281,7.0615994e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014274826,0.00026510225,0.000004225011,0.03194045,0.00043495384,0.000013994488,0.000052868283,0.000012254302,0.20528765,0.000051503128,0.008462492,0.7533318],"study_design_scores_gemma":[0.001117749,0.00028979924,1.03242925e-7,0.005885354,0.0005292174,0.00007853815,0.0000139585945,0.0003354922,0.018918892,0.000025346912,0.9720417,0.00076379674],"about_ca_topic_score_codex":0.000009723528,"about_ca_topic_score_gemma":0.000008056042,"teacher_disagreement_score":0.96357924,"about_ca_system_score_codex":0.000070559414,"about_ca_system_score_gemma":0.0005575739,"threshold_uncertainty_score":0.999537},"labels":[],"label_agreement":null},{"id":"W3174207866","doi":"10.1038/s41596-021-00561-x","title":"Prioritization of cell types responsive to biological perturbations in single-cell data with Augur","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre; Michael Smith Health Research BC; International Collaboration On Repair Discoveries","funders":"Canadian Institutes of Health Research","keywords":"Prioritization; Computer science; Computational biology; Cell type; Protocol (science); Workflow; Chromatin; Genomics; Single-cell analysis; Systems biology; Cell; Biology; Genome; Gene; Genetics","score_opus":0.0334116976477594,"score_gpt":0.30010877367943,"score_spread":0.2666970760316706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174207866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96777856,0.000556311,0.00424571,0.00048157896,0.000085402666,0.022867896,0.00023112546,0.000021115531,0.0037323132],"genre_scores_gemma":[0.9813773,0.000012281894,0.014070666,0.0004564105,0.00010183286,0.002670358,0.00064291694,0.000019425835,0.00064880424],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990881,0.00009123073,0.00017966845,0.00038708246,0.0001117687,0.00014212751],"domain_scores_gemma":[0.9991617,0.00003011861,0.000057997862,0.00046858593,0.00023357921,0.000048020363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012026528,0.000112731395,0.00014333383,0.000043554344,0.00002954496,0.000019834717,0.00024971843,0.00031792352,0.000014046048],"category_scores_gemma":[0.00024410315,0.0000918505,0.000025821982,0.00024591698,0.000033846445,0.000005920682,0.000105622785,0.00019175814,0.000002200612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004575042,0.00033905977,0.0066692894,0.00004892346,0.000006849747,0.00000765112,0.000054755794,0.000043698423,0.9914934,0.00004423084,0.00046483128,0.00036979196],"study_design_scores_gemma":[0.0008774839,0.00064354215,0.0026793445,0.00007231669,0.000006914617,0.000004863703,0.00004321222,0.000036825524,0.9549418,0.000033974946,0.040510505,0.0001491955],"about_ca_topic_score_codex":0.000006384118,"about_ca_topic_score_gemma":0.00013100801,"teacher_disagreement_score":0.040045675,"about_ca_system_score_codex":0.000013291374,"about_ca_system_score_gemma":0.0001919787,"threshold_uncertainty_score":0.37455547},"labels":[],"label_agreement":null},{"id":"W3175726254","doi":"10.1038/s41596-021-00572-8","title":"Testing physiologically relevant conditions in minimal inhibitory concentration assays","year":2021,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"CIHR Skin Research Training Centre; Canadian Institutes of Health Research; Government of Canada","keywords":"Minimum inhibitory concentration; Antimicrobial; Broth microdilution; Agar dilution; Microbiology; Bacteria; Agar Dilution Method; In vivo; Bacterial growth; Bioassay; Biology; Chemistry; Agar; Chromatography; Biotechnology","score_opus":0.06259411529225328,"score_gpt":0.3969966653660705,"score_spread":0.3344025500738172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175726254","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00060040795,0.93974584,0.000015775213,0.00002987962,0.00027021993,0.057891127,0.00015880437,0.00006008637,0.0012278669],"genre_scores_gemma":[0.0034046017,0.68756187,0.007914864,0.0005827741,0.003682017,0.28169307,0.014124031,0.00020827539,0.0008284812],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997648,0.00049033103,0.00071136886,0.0007360313,0.00015111962,0.00026316097],"domain_scores_gemma":[0.9986639,0.00013238685,0.0004056888,0.00045613342,0.00027256348,0.00006932256],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043896903,0.00031068962,0.0007176598,0.0000471234,0.000089063295,0.000104271465,0.00025724614,0.0012941097,0.00004099274],"category_scores_gemma":[0.0029453477,0.00027599453,0.00023615133,0.00030155177,0.0000700812,0.0000070606015,0.00013247677,0.00085224124,0.000015592024],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043951015,0.0007354981,0.0004584671,0.012906645,0.00013574265,0.00005839836,0.000035266334,0.000004040865,0.4571311,0.000583436,0.0072837262,0.52062374],"study_design_scores_gemma":[0.00031206588,0.00014288853,0.00046004614,0.008590939,0.000046517092,0.00002906741,0.00000927356,0.0000057947373,0.001032612,0.00004645981,0.9889052,0.00041912956],"about_ca_topic_score_codex":0.0000029215248,"about_ca_topic_score_gemma":0.0000138136165,"teacher_disagreement_score":0.9816215,"about_ca_system_score_codex":0.000070394424,"about_ca_system_score_gemma":0.00060251605,"threshold_uncertainty_score":0.99996924},"labels":[],"label_agreement":null},{"id":"W3187447023","doi":"10.1038/s41596-021-00586-2","title":"Interrogating in vivo T-cell metabolism in mice using stable isotope labeling metabolomics and rapid cell sorting","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Metabolomics; In vivo; Metabolite; Biology; Metabolic pathway; Metabolism; Immune system; Biochemistry; Metabolome; Cell; Chemistry; Cell biology; Immunology; Bioinformatics; Genetics","score_opus":0.01360745619186002,"score_gpt":0.2905709895763247,"score_spread":0.27696353338446467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3187447023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97407305,0.014412755,0.00017481514,0.00007370265,0.00012091697,0.008985335,0.00002513704,0.000010679193,0.0021236222],"genre_scores_gemma":[0.9543097,0.00057080656,0.039213173,0.0004463624,0.00022205496,0.0048083765,0.000023515156,0.000057708607,0.00034829808],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980802,0.00015873647,0.0005059676,0.00063237216,0.00014954768,0.00047317345],"domain_scores_gemma":[0.9992757,0.00003467998,0.00022312877,0.00026627653,0.00013486898,0.000065381566],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00069679465,0.00027068998,0.00047538188,0.00014729795,0.000094094634,0.00008121783,0.00017957862,0.00037808155,0.000031549836],"category_scores_gemma":[0.00031071596,0.00027228086,0.00008048933,0.00042100842,0.000037705104,0.000017166181,0.0004077564,0.0006410645,7.1873626e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059593436,0.00011435652,0.0036486923,0.00014246361,0.000024063338,0.000015016786,0.00018254224,0.00009680718,0.995115,0.00013592419,0.00004302112,0.00042253212],"study_design_scores_gemma":[0.0017147352,0.000041957075,0.00022432607,0.000083062674,0.000023333803,0.0000103196135,0.00064495,0.0005389881,0.9759901,0.00017024648,0.020260217,0.00029772776],"about_ca_topic_score_codex":0.000051794992,"about_ca_topic_score_gemma":0.00044499157,"teacher_disagreement_score":0.03903836,"about_ca_system_score_codex":0.000030042744,"about_ca_system_score_gemma":0.00013491562,"threshold_uncertainty_score":0.99997294},"labels":[],"label_agreement":null},{"id":"W3188821865","doi":"10.1038/s41596-021-00591-5","title":"Identification of cancer-related mutations in human pluripotent stem cells using RNA-seq analysis","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Azrieli Foundation; Israel Science Foundation; Rosetrees Trust","keywords":"Induced pluripotent stem cell; Computational biology; Biology; Gene; Genetics; Embryonic stem cell","score_opus":0.011146512655905622,"score_gpt":0.36956849378279105,"score_spread":0.35842198112688545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3188821865","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98752815,0.00067983114,0.0043498515,0.000030264875,0.000052429183,0.0072747557,0.000027632741,0.000009601809,0.00004746577],"genre_scores_gemma":[0.99493235,0.00000908661,0.0005032602,0.000011871594,0.000028820925,0.0042539905,0.000046824953,0.000010666905,0.0002031487],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991959,0.000037476675,0.00031016095,0.00023432456,0.00011136894,0.00011077297],"domain_scores_gemma":[0.9994628,0.0000043446603,0.000108901346,0.00024881068,0.00014716825,0.00002800025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118972624,0.000085310145,0.00014113699,0.00010039766,0.000032345986,0.000015905267,0.00009160044,0.00021999038,0.000013860275],"category_scores_gemma":[0.000010144604,0.0000919258,0.000100082165,0.0005117403,0.000014223034,0.0000025306047,0.000035491765,0.0001478175,3.547031e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004714245,0.0000529673,0.0022333802,0.000054364722,0.00015371646,0.000002447693,0.00006381089,0.05273707,0.94424987,0.000027128473,0.000008122769,0.0004124257],"study_design_scores_gemma":[0.00031205444,0.000017486751,0.005210388,0.000032534546,0.00010652088,0.0000010004312,0.000037267266,0.0034274878,0.99028116,0.000027069882,0.00045223796,0.000094811774],"about_ca_topic_score_codex":0.000030992498,"about_ca_topic_score_gemma":0.00017272284,"teacher_disagreement_score":0.049309578,"about_ca_system_score_codex":0.000028653849,"about_ca_system_score_gemma":0.000070072914,"threshold_uncertainty_score":0.37486255},"labels":[],"label_agreement":null},{"id":"W3190759848","doi":"10.1038/s41596-021-00573-7","title":"NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Azrieli Foundation; Deutsche Forschungsgemeinschaft","keywords":"Computational biology; Python (programming language); Computer science; Gene expression; Pipeline (software); Spatial analysis; Gene; Biology; Genetics","score_opus":0.012997855514882058,"score_gpt":0.24937110363986412,"score_spread":0.23637324812498206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3190759848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94208074,0.00026188607,0.04315104,0.0000595456,0.00018153293,0.011907719,0.00005909228,0.000034756835,0.0022636745],"genre_scores_gemma":[0.95789754,0.000010348439,0.03732239,0.0001042196,0.00028233268,0.0036354295,0.00019703238,0.00003877369,0.0005119241],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998849,0.000045006982,0.0002620159,0.0004231828,0.0002105899,0.00021024603],"domain_scores_gemma":[0.99918604,0.000006585142,0.0001290006,0.00034534186,0.00025885613,0.00007417481],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000088150635,0.0001885695,0.00021956803,0.000034209264,0.00005949704,0.000016243608,0.00014646848,0.00047904195,0.000050253566],"category_scores_gemma":[0.000015624608,0.0001620051,0.000104232626,0.00012344342,0.0000806568,0.000009751389,0.000024210474,0.00028125558,0.0000012330328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009277002,0.0003220912,0.010295517,0.00012320407,0.000022763517,0.000011675196,0.000025141504,0.0001800286,0.9852336,0.000007200182,0.000067236404,0.0027838517],"study_design_scores_gemma":[0.0016961654,0.00068550085,0.0007245905,0.00014039337,0.00001918301,0.00006901695,0.000022376766,0.00001665153,0.9886669,0.00001191691,0.007738875,0.00020845042],"about_ca_topic_score_codex":0.000015080813,"about_ca_topic_score_gemma":0.00003634403,"teacher_disagreement_score":0.015816795,"about_ca_system_score_codex":0.000013431951,"about_ca_system_score_gemma":0.00019036687,"threshold_uncertainty_score":0.6606376},"labels":[],"label_agreement":null},{"id":"W3196445399","doi":"10.1038/s41596-021-00603-4","title":"Multiplexed single-cell analysis of organoid signaling networks","year":2021,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Medical Research Council; University College London Hospitals NHS Foundation Trust; Rosetrees Trust; Royal Society; Cancer Research UK","keywords":"Organoid; Mass cytometry; Cell biology; Cell; Flow cytometry; Cell type; Biology; Cell signaling; Single-cell analysis; Signal transduction; Molecular biology; Phenotype; Biochemistry","score_opus":0.064192080332029,"score_gpt":0.39780826691009863,"score_spread":0.33361618657806963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3196445399","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[6.9988755e-7,0.9126523,0.00027294212,0.000009111908,0.00010763192,0.086022235,0.00009476516,0.00004319516,0.0007970882],"genre_scores_gemma":[0.00001458741,0.9221792,0.006368034,0.00014678997,0.0005583005,0.06857292,0.0010142606,0.00012747849,0.0010184095],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99696755,0.00021921142,0.0011134425,0.0007368267,0.00056584284,0.00039712572],"domain_scores_gemma":[0.9971594,0.00027975027,0.0009518796,0.0009464215,0.00045719033,0.00020533816],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00045623898,0.0005658725,0.0051157195,0.0006680516,0.000046534868,0.000044189524,0.0002735926,0.001470799,0.00082136644],"category_scores_gemma":[0.00018984075,0.00043108096,0.0025183118,0.0038812775,0.000052584997,0.00003252614,0.00012256547,0.0019065569,0.000005846073],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000629654,0.00061933236,0.000027655065,0.04380327,0.0054631764,0.00010696133,0.000030761144,0.00006883011,0.0007707644,0.000012862715,0.0011959692,0.9478375],"study_design_scores_gemma":[0.0007658354,0.00013669193,0.0000010407012,0.022395564,0.026701627,0.000014749292,0.0000083364175,0.000037615995,0.0016579888,5.6568365e-7,0.9479452,0.000334834],"about_ca_topic_score_codex":0.000012303151,"about_ca_topic_score_gemma":0.000013451478,"teacher_disagreement_score":0.9475026,"about_ca_system_score_codex":0.00022233676,"about_ca_system_score_gemma":0.00065697957,"threshold_uncertainty_score":0.9998255},"labels":[],"label_agreement":null},{"id":"W3196896120","doi":"10.1038/s41596-021-00596-0","title":"Analysis of combinatorial CRISPR screens with the Orthrus scoring pipeline","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Human Genome Research Institute; National Institutes of Health; Ontario Institute for Regenerative Medicine; National Science Foundation; U.S. Department of Health and Human Services; Government of Canada; Canadian Institutes of Health Research; Genome Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"CRISPR; Computer science; Guide RNA; Pipeline (software); Computational biology; Protocol (science); R package; Cas9; Data mining; Biology; Gene; Genetics; Programming language; Medicine","score_opus":0.0068566095752613946,"score_gpt":0.3312340295636992,"score_spread":0.3243774199884378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3196896120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.69012946,0.0067907777,0.20632981,0.0020084751,0.0008491946,0.08139929,0.00023991996,0.00012691604,0.012126125],"genre_scores_gemma":[0.99405473,0.000008077547,0.0010775563,0.00013017782,0.0002392099,0.0041586086,0.0000679215,0.000016313568,0.00024740517],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992352,0.000033002223,0.0001514101,0.0002420064,0.0001867556,0.00015163682],"domain_scores_gemma":[0.9991964,0.000015306829,0.00006398124,0.00044397847,0.00024036363,0.00003994793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015318497,0.000116196265,0.00019533654,0.00004524118,0.00004714738,0.000017718248,0.00014765748,0.00018145678,0.000016068208],"category_scores_gemma":[0.00007839822,0.00007897137,0.00012386158,0.0004911755,0.000037151418,0.0000016541082,0.00008058579,0.00022921512,4.2158337e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067838054,0.00031259874,0.048022807,0.00020312548,0.0024046944,0.000040357634,0.00014759076,0.012301009,0.9245379,0.001700124,0.0038662432,0.00578517],"study_design_scores_gemma":[0.00091212644,0.00018874912,0.010536965,0.000040143706,0.00031297523,0.000007707288,0.00006660659,0.00038607136,0.92864305,0.000017570701,0.058710057,0.00017795696],"about_ca_topic_score_codex":0.00000828378,"about_ca_topic_score_gemma":0.00010960186,"teacher_disagreement_score":0.30392525,"about_ca_system_score_codex":0.0000051593306,"about_ca_system_score_gemma":0.00007224626,"threshold_uncertainty_score":0.32203588},"labels":[],"label_agreement":null},{"id":"W3197511916","doi":"10.1038/s41596-021-00587-1","title":"Hierarchical imaging and computational analysis of three-dimensional vascular network architecture in the entire postnatal and adult mouse brain","year":2021,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Barrier Structure and Function Studies","field":"Neuroscience","cited_by":61,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Krembil Foundation; University of Toronto; University Health Network; Ontario Brain Institute; Toronto Western Hospital","funders":"","keywords":"Vascular network; Brain atlas; Biomedical engineering; Biology; Pathology; Anatomy; Neuroscience; Computer science; Medicine","score_opus":0.02256679002869116,"score_gpt":0.33331664786412496,"score_spread":0.3107498578354338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3197511916","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017055194,0.9696489,0.00043968926,0.0005018799,0.00006693784,0.028837988,0.00025761087,0.000025302057,0.000051118866],"genre_scores_gemma":[0.0047550406,0.7758408,0.013687633,0.025629746,0.0024284788,0.1750418,0.0020219942,0.00039727113,0.00019723104],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99712765,0.0006837451,0.0005210956,0.00074820267,0.00064794935,0.00027135975],"domain_scores_gemma":[0.9978108,0.0014214651,0.00027535274,0.00032407528,0.00010579046,0.0000625296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004189949,0.00038165602,0.0013522945,0.00034315945,0.00022041099,0.000105252075,0.0002825928,0.00034450964,0.000015972624],"category_scores_gemma":[0.00055880996,0.00023457689,0.00041960628,0.0016746103,0.0003200256,0.00005934646,0.00028371564,0.0018384737,3.3164983e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012024623,0.00017467354,0.0021524031,0.007730096,0.001988911,0.00047192987,0.0007616263,0.0016060844,0.000023581128,0.01743449,0.0033424795,0.96419346],"study_design_scores_gemma":[0.001313229,0.00011782555,0.004949884,0.0055067856,0.0023886901,0.00068659615,0.000032529257,0.0018798725,0.000010705195,0.0033498923,0.9788262,0.0009377362],"about_ca_topic_score_codex":0.0000072747057,"about_ca_topic_score_gemma":0.000058143058,"teacher_disagreement_score":0.9754838,"about_ca_system_score_codex":0.0000179298,"about_ca_system_score_gemma":0.00012135589,"threshold_uncertainty_score":0.95657676},"labels":[],"label_agreement":null},{"id":"W3199433351","doi":"10.1038/s41596-021-00604-3","title":"Affinity-based profiling of endogenous phosphoprotein phosphatases by mass spectrometry","year":2021,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Cancer Institute; Wellcome Trust; U.S. Department of Health and Human Services","keywords":"Phosphoprotein; Interactome; Endogeny; Phosphatase; Dephosphorylation; Proteomics; Phosphorylation; Chemistry; Biochemistry; Phosphoproteomics; Biology; Molecular biology; Protein phosphorylation; Computational biology; Protein kinase A","score_opus":0.05646610921273789,"score_gpt":0.38244700339041715,"score_spread":0.3259808941776793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199433351","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[9.0625565e-7,0.8970892,0.00031317453,0.00004867393,0.00001766664,0.09983191,0.0014294869,0.00010615976,0.0011628703],"genre_scores_gemma":[0.000025540889,0.69409955,0.028020138,0.0006850395,0.00045256043,0.26620874,0.009673501,0.00023121567,0.0006037312],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962749,0.00026194623,0.0012032873,0.00083484343,0.0009342324,0.0004907915],"domain_scores_gemma":[0.99713856,0.00022768107,0.0009929244,0.0009964259,0.00038246054,0.0002619486],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0005234171,0.00071221316,0.0036830637,0.00048575722,0.000089969784,0.000057981695,0.00032586008,0.0014171081,0.0012921132],"category_scores_gemma":[0.00066469604,0.00056536286,0.001694541,0.0018707385,0.00010536185,0.000055463373,0.00006679761,0.002521331,0.00004973862],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043056867,0.004692534,0.00007387903,0.41585812,0.0032844073,0.0027133513,0.000022297623,0.0000011868889,0.029211074,0.0011672829,0.020296428,0.52224886],"study_design_scores_gemma":[0.0010458031,0.0002461682,9.638038e-8,0.101322904,0.00085479376,0.00008313647,0.000008368816,0.0000025293,0.23384218,0.0000161963,0.66218686,0.00039097687],"about_ca_topic_score_codex":0.00001089698,"about_ca_topic_score_gemma":8.882804e-7,"teacher_disagreement_score":0.6418904,"about_ca_system_score_codex":0.00026038798,"about_ca_system_score_gemma":0.0016250015,"threshold_uncertainty_score":0.99987924},"labels":[],"label_agreement":null},{"id":"W3209236440","doi":"10.1038/s41596-021-00612-3","title":"Probing the free-state solution behavior of drugs and their tendencies to self-aggregate into nano-entities","year":2021,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Mitacs; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Institut Pasteur; Canada Foundation for Innovation; Institut national de la recherche scientifique","keywords":"Aggregate (composite); Nano-; Nanotechnology; Plant biology; Computational biology; Statistical physics; Biological system; Computer science; Chemistry; Materials science; Biology; Physics; Chemical engineering; Engineering; Botany","score_opus":0.014995941714835903,"score_gpt":0.3178277411933267,"score_spread":0.30283179947849076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209236440","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013209955,0.9239896,0.000016536189,0.000058899037,0.00024154966,0.074012354,0.00018778884,0.000031651867,0.00014063263],"genre_scores_gemma":[0.0010147735,0.749745,0.0016227372,0.00022280637,0.00085394294,0.24356438,0.0004215062,0.00015378435,0.0024010844],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982302,0.00019482123,0.00047328582,0.0005722764,0.0002287184,0.00030070075],"domain_scores_gemma":[0.9984818,0.000025636022,0.000351853,0.0008194593,0.00024048303,0.00008073186],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003167931,0.00047223087,0.00086141337,0.00008702535,0.00016359585,0.00009237658,0.0006018486,0.0007728529,0.000009728282],"category_scores_gemma":[0.00008000251,0.00027103806,0.00036525502,0.00022345189,0.00011693559,0.0000087043,0.00061139284,0.0006171069,0.000001690879],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036001427,0.00014579395,0.000025616322,0.017439155,0.000334917,0.00000743331,0.0013859503,2.8442162e-7,0.1307746,0.00008167382,0.002477685,0.8472909],"study_design_scores_gemma":[0.00019589621,0.0001554828,0.0000041021635,0.003791818,0.00027785974,0.000049708615,0.00008583424,1.0260194e-7,0.13184828,0.000018579945,0.86326367,0.00030870258],"about_ca_topic_score_codex":0.00001813831,"about_ca_topic_score_gemma":0.00004544894,"teacher_disagreement_score":0.86078596,"about_ca_system_score_codex":0.00003546173,"about_ca_system_score_gemma":0.00040673462,"threshold_uncertainty_score":0.9999742},"labels":[],"label_agreement":null},{"id":"W3210133062","doi":"10.1038/s41596-021-00627-w","title":"The spontaneous location recognition task for assessing spatial pattern separation and memory across a delay in rats and mice","year":2021,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Memory and Neural Mechanisms","field":"Neuroscience","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; McGill University; Douglas Mental Health University Institute; Western University","funders":"Biotechnology and Biological Sciences Research Council; Canada First Research Excellence Fund","keywords":"Habituation; Task (project management); Separation (statistics); Encoding (memory); Cognition; Categorization; Pattern recognition (psychology); Similarity (geometry); Computer science; Neuroscience; Object (grammar); Spatial memory; Working memory; Psychology; Cognitive psychology; Artificial intelligence; Machine learning","score_opus":0.12614846705797522,"score_gpt":0.46117968707232415,"score_spread":0.33503122001434893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3210133062","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002574968,0.7126178,0.002008399,0.00016757725,0.00063749036,0.28168446,0.00018875285,0.00007583856,0.00004468161],"genre_scores_gemma":[0.004774153,0.53279245,0.0004130019,0.0009173634,0.00069710193,0.45983568,0.000225565,0.0001250744,0.00021958884],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997622,0.0007085497,0.0004614188,0.00070039235,0.0002219291,0.00028569528],"domain_scores_gemma":[0.99801385,0.0012138864,0.00040379755,0.00021724583,0.00009524231,0.000055952136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00074381067,0.000307279,0.00057541893,0.000058050195,0.0004197471,0.00053259125,0.00017113707,0.0006197293,0.000002741721],"category_scores_gemma":[0.0010275261,0.00021856486,0.000079647296,0.0002553158,0.00005422527,0.00025527738,0.00008240231,0.00088969094,0.000002927559],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040907475,0.000025506324,3.1237983e-7,0.0043374067,0.0000033549998,0.00012081826,0.000085933505,3.4931318e-7,0.0035731264,0.000007931119,0.00001938641,0.991785],"study_design_scores_gemma":[0.0028930025,0.0008384571,0.000013509859,0.069832794,0.00036873785,0.010460924,0.00015020647,0.0016058745,0.22158462,0.0016647578,0.6884505,0.0021366063],"about_ca_topic_score_codex":0.0000044034828,"about_ca_topic_score_gemma":0.00020555424,"teacher_disagreement_score":0.98964834,"about_ca_system_score_codex":0.00006441125,"about_ca_system_score_gemma":0.00014688587,"threshold_uncertainty_score":0.89128166},"labels":[],"label_agreement":null},{"id":"W4210617107","doi":"10.1038/s41596-021-00659-2","title":"Artificial intelligence–enabled virtual screening of ultra-large chemical libraries with deep docking","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":389,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Vancouver Coastal Health Research Institute; Fondazione Zegna","keywords":"Virtual screening; Computer science; Workflow; Chemical database; Docking (animal); Drug discovery; Bioinformatics; Database; Biology","score_opus":0.07732661057771312,"score_gpt":0.3948962207137753,"score_spread":0.31756961013606216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210617107","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[4.677633e-7,0.29422283,0.6619292,0.0000258919,0.00013327671,0.04303465,0.000032325977,0.00014899689,0.00047236765],"genre_scores_gemma":[0.00007877973,0.10296397,0.6366185,0.0002584874,0.00076299097,0.2587235,0.00030441076,0.00023310166,0.000056280605],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99522895,0.0007790488,0.0011040802,0.0010469449,0.0012912231,0.00054977916],"domain_scores_gemma":[0.99583435,0.0021111914,0.00090215047,0.0008896672,0.00013332503,0.00012929857],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0013502255,0.00059980043,0.0016103929,0.00041564854,0.00021867617,0.00042319478,0.0028766128,0.0005743895,0.00011288073],"category_scores_gemma":[0.00056500675,0.0004755524,0.0004775326,0.0021469663,0.00011970769,0.0007541152,0.0010064045,0.0026661092,0.000006386153],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044227727,0.000121913,0.0000013789286,0.002504997,0.000105756095,0.00002940732,0.00016865964,0.0010022942,0.000001534584,0.14808328,0.000024635183,0.8479119],"study_design_scores_gemma":[0.00012435681,0.00028129062,6.204226e-7,0.0069047315,0.00009947501,0.00010293147,0.00003619826,0.009963805,0.0008209635,0.012566756,0.96831256,0.00078631],"about_ca_topic_score_codex":0.0000020766165,"about_ca_topic_score_gemma":9.421124e-7,"teacher_disagreement_score":0.96828794,"about_ca_system_score_codex":0.00012799662,"about_ca_system_score_gemma":0.0011372484,"threshold_uncertainty_score":0.9997696},"labels":[],"label_agreement":null},{"id":"W4210869023","doi":"10.1038/s41596-021-00671-6","title":"Global mapping of RNA G-quadruplexes (G4-RNAs) using G4RP-seq","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Institut National Du Cancer; University of British Columbia; Agence Nationale de la Recherche","keywords":"RNA; Computational biology; Guanine; G-quadruplex; Transcriptome; Nucleic acid structure; Snapshot (computer storage); Biology; Small nucleolar RNA; RNA-Seq; Chemistry; Non-coding RNA; Genetics; Gene; Gene expression; Nucleotide; Computer science; DNA; Database","score_opus":0.06624433977666459,"score_gpt":0.3883859841508377,"score_spread":0.3221416443741731,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210869023","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000110165465,0.93206686,0.0006803586,0.00000829722,0.00022173117,0.06509792,0.0002762332,0.000024028632,0.001613568],"genre_scores_gemma":[0.000031590516,0.87901235,0.007296802,0.00011117459,0.0007971162,0.11196676,0.00030216546,0.00013125312,0.00035081102],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997132,0.00043269727,0.00076183595,0.00077934895,0.0004694751,0.0004246472],"domain_scores_gemma":[0.99798816,0.000038835446,0.0008723279,0.0009126221,0.00008469602,0.00010333074],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0006442148,0.0005770773,0.0013314144,0.000110347384,0.0001516351,0.000046946567,0.0009699232,0.0015233979,0.00024922093],"category_scores_gemma":[0.00025780837,0.0005032931,0.0008259515,0.00044119844,0.00006107343,0.0000051011143,0.0005340533,0.0006273497,0.000005803722],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005277736,0.00009198137,0.0000083436125,0.013032319,0.0003242234,0.000017091437,0.0000072585553,0.000005434056,0.008089578,0.00038717262,0.00067995174,0.97730386],"study_design_scores_gemma":[0.00021041132,0.00017492681,8.5489836e-7,0.0041786055,0.00014151204,0.000060065257,0.000008381897,0.0000015778799,0.007256458,0.000289958,0.9871811,0.0004961199],"about_ca_topic_score_codex":0.000011592778,"about_ca_topic_score_gemma":0.000002735265,"teacher_disagreement_score":0.98650116,"about_ca_system_score_codex":0.000115854586,"about_ca_system_score_gemma":0.0006131922,"threshold_uncertainty_score":0.99977285},"labels":[],"label_agreement":null},{"id":"W4213300278","doi":"10.1038/s41596-021-00649-4","title":"A methodological checklist for fMRI drug cue reactivity studies: development and expert consensus","year":2022,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Functional Brain Connectivity Studies","field":"Neuroscience","cited_by":93,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institut Universitaire en Santé Mentale de Québec","funders":"National Center for Complementary and Integrative Health; National Heart, Lung, and Blood Institute; Laureate Institute for Brain Research, University of Tulsa; National Institutes of Health; National Natural Science Foundation of China; National Institute on Alcohol Abuse and Alcoholism; National Institute on Drug Abuse; National Alliance for Research on Schizophrenia and Depression; Eli Lilly and Company; Deutsche Forschungsgemeinschaft; Eli Lilly Canada; Bundesministerium für Bildung und Forschung; Oklahoma Center for the Advancement of Science and Technology; Brain and Behavior Research Foundation","keywords":"Checklist; Drug development; Drug target; Consensus conference; Drug discovery; Drug; Psychology; Neuroscience; Computational biology; Medicine; Bioinformatics; Biology; Pharmacology; Psychiatry; Cognitive psychology; Internal medicine","score_opus":0.27722179972150907,"score_gpt":0.45304659553716775,"score_spread":0.17582479581565869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213300278","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3529075,0.0027605738,0.0014500179,0.11613265,0.0023845448,0.51826763,0.00033831847,0.0012114458,0.0045472886],"genre_scores_gemma":[0.17723483,0.000005989977,0.026866337,0.013898258,0.00020300382,0.78020436,0.0000026969708,0.0000364308,0.0015480769],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972997,0.0007753368,0.00024881115,0.0008657054,0.00048019827,0.00033028243],"domain_scores_gemma":[0.9796611,0.019776063,0.00015283088,0.00023375772,0.00011201078,0.00006422478],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0020672204,0.00023568627,0.00041977546,0.00008152418,0.0012439013,0.00003757823,0.00021891347,0.00010040726,0.000016988617],"category_scores_gemma":[0.036764517,0.00019503172,0.00007755503,0.0002703645,0.00022653064,0.000065636836,0.0006306645,0.00079415337,0.0000021364003],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007163722,0.0018615094,0.0014306043,0.0009044603,0.00034951878,0.00021706402,0.016753027,0.0000719325,0.4657248,0.03244185,0.41301408,0.060067452],"study_design_scores_gemma":[0.0010454429,0.00023349511,0.00045977646,0.000025052652,0.0000053246586,0.00006705914,0.0009123556,0.000041545853,0.21778874,0.003393093,0.7757664,0.00026170677],"about_ca_topic_score_codex":0.000004350039,"about_ca_topic_score_gemma":0.000014877437,"teacher_disagreement_score":0.36275232,"about_ca_system_score_codex":0.00027338983,"about_ca_system_score_gemma":0.0001369145,"threshold_uncertainty_score":0.97134924},"labels":[],"label_agreement":null},{"id":"W4220698326","doi":"10.1038/s41596-021-00664-5","title":"A checklist for assessing the methodological quality of concurrent tES-fMRI studies (ContES checklist): a consensus study and statement","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Transcranial Magnetic Stimulation Studies","field":"Neuroscience","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; Centre for Addiction and Mental Health","funders":"National Institute on Drug Abuse; National Institute of Mental Health; Neuroscience Center Zurich, University of Zurich; Centro de Ciências Matemáticas Aplicadas à Indústria; Fundação para a Ciência e a Tecnologia; Leibniz-Gemeinschaft; Biotechnology and Biological Sciences Research Council; Queen Elisabeth Medical Foundation; National Institutes of Health; Fondation Médicale Reine Elisabeth; University of Surrey; Ministry of Science and Technology, Taiwan; Vrije Universiteit Brussel; University College London; Lundbeckfonden; Laureate Institute for Brain Research, University of Tulsa; Technische Universiteit Eindhoven; Ministero della Salute; Canadian Institutes of Health Research; Fonds Wetenschappelijk Onderzoek; Eidgenössische Technische Hochschule Zürich; Boehringer Ingelheim Stiftung; Ludwig-Maximilians-Universität München; Vlaamse regering; National Institute for Health and Care Research; Deutsche Forschungsgemeinschaft; Gentofte Hospital; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Chongqing Science and Technology Commission; Johns Hopkins University; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Eberhard Karls Universität Tübingen; Universidade de Coimbra; Jacobs Foundation; Universidade de São Paulo; European Commission; Fundação de Amparo à Pesquisa do Estado de São Paulo; Deutscher Akademischer Austauschdienst; Niedersächsisches Ministerium für Wissenschaft und Kultur; Oklahoma Center for the Advancement of Science and Technology; University of Oxford; National Institute of Neurological Disorders and Stroke; Universität Zürich; Natural Sciences and Engineering Research Council of Canada; Bundesministerium für Bildung und Forschung; University of Queensland; Division of Mathematical Sciences; Wellcome Trust; Leibniz-Institut für Arbeitsforschung an der TU Dortmund; H. Lundbeck A/S; Medical Research Council; McKnight Foundation; National Institute of General Medical Sciences; National Alliance for Research on Schizophrenia and Depression; University of Pittsburgh; Bispebjerg Hospital; National Science Foundation; Faculty of Health and Medical Sciences, University of Western Australia; Max-Planck-Gesellschaft; Royal Society","keywords":"Checklist; Psychology; Delphi method; Delphi; Medicine; Computer science; Artificial intelligence; Cognitive psychology","score_opus":0.676716629282388,"score_gpt":0.6289808608528554,"score_spread":0.04773576842953253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220698326","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001200131,0.74575794,0.00012402286,0.00021425645,0.00026789427,0.25289598,0.00042079645,0.00007401248,0.00012508321],"genre_scores_gemma":[0.002083735,0.3649648,0.0017477938,0.00019576511,0.00014311424,0.6306238,0.000009280863,0.00007048442,0.00016119408],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9899106,0.0056324196,0.0019863222,0.0011410529,0.0009180051,0.00041157842],"domain_scores_gemma":[0.96603763,0.03141698,0.0016684497,0.0005493488,0.00026174827,0.000065833396],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.006089453,0.0006663351,0.0031785057,0.00012813421,0.00066481374,0.0001422012,0.00061404327,0.00026536323,0.000037052745],"category_scores_gemma":[0.02383784,0.00038065808,0.0004944393,0.00056036597,0.0007927246,0.000052916996,0.0005162192,0.0013557583,6.581902e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003310059,0.0015326168,0.00018666984,0.049368218,0.0007675139,0.000021126501,0.0026295048,0.0000041635944,0.00035772423,0.0037750767,0.0009362992,0.94009006],"study_design_scores_gemma":[0.0026307213,0.0011553091,0.00054632616,0.0021996237,0.00073045585,0.00001336648,0.0015627354,0.000011762658,0.00003848634,0.00051734905,0.9900964,0.0004974995],"about_ca_topic_score_codex":0.0000127483545,"about_ca_topic_score_gemma":0.000012646337,"teacher_disagreement_score":0.98916006,"about_ca_system_score_codex":0.00015026383,"about_ca_system_score_gemma":0.00025506841,"threshold_uncertainty_score":0.9998645},"labels":[],"label_agreement":null},{"id":"W4238821974","doi":"10.1038/s41596-021-00569-3","title":"Author Correction: The maternal serum metabolome by multisegment injection-capillary electrophoresis-mass spectrometry: a high-throughput platform and standardized data workflow for large-scale epidemiological studies","year":2021,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Health Sciences; Impact; University of Toronto; Population Health Research Institute; McMaster University","funders":"","keywords":"Metabolome; Workflow; Capillary electrophoresis; Throughput; Computational biology; Mass spectrometry; Scale (ratio); Computer science; Chromatography; Metabolomics; Biology; Chemistry; Database; Physics; Operating system","score_opus":0.03239871841159323,"score_gpt":0.35453764297231777,"score_spread":0.3221389245607245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4238821974","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.33374265,0.33405626,0.15053976,0.022297947,0.0066858307,0.14195931,0.009835535,0.00036575165,0.00051694416],"genre_scores_gemma":[0.4596901,0.030277837,0.29495263,0.007424702,0.007197636,0.17452948,0.00446477,0.0004028088,0.021060009],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99713475,0.00023575684,0.0005111833,0.0011194457,0.00032998403,0.000668878],"domain_scores_gemma":[0.99812514,0.0002217913,0.00026748184,0.00092106994,0.00035081682,0.00011371351],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015417533,0.00042903575,0.0008011207,0.00006106855,0.0005949717,0.00011927599,0.00046195017,0.0004970806,0.00003755565],"category_scores_gemma":[0.0014216447,0.00028059943,0.00016820969,0.00036678024,0.00013911807,0.000022839258,0.00072741,0.00062740146,0.0000015561724],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024814378,0.00034027564,0.007095086,0.00023297446,0.003330805,0.000017377524,0.00009879069,0.000018527177,0.5101813,0.00182052,0.4705542,0.0038286543],"study_design_scores_gemma":[0.0031297978,0.0010717401,0.003948055,0.000059751896,0.00024820174,0.00009577234,0.00038605373,0.00028392862,0.3355191,0.0026277464,0.65209925,0.0005305985],"about_ca_topic_score_codex":0.0000067869696,"about_ca_topic_score_gemma":0.00008665076,"teacher_disagreement_score":0.30377844,"about_ca_system_score_codex":0.00007121897,"about_ca_system_score_gemma":0.00011682078,"threshold_uncertainty_score":0.9999646},"labels":[],"label_agreement":null},{"id":"W4280572101","doi":"10.1038/s41596-022-00694-7","title":"A puromycin-dependent activity-based sensing probe for histochemical staining of hydrogen peroxide in cells and animal tissues","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Molecular Sensors and Ion Detection","field":"Chemistry","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Environmental Health Sciences; Japan Society for the Promotion of Science; U.S. Department of Health and Human Services; National Institutes of Health; Croucher Foundation; National Institute of General Medical Sciences; Canadian Institute for Advanced Research","keywords":"Puromycin; Hydrogen peroxide; Confocal; Reactive oxygen species; Cell culture; Chemistry; Western blot; Biochemistry; Staining; Molecular biology; Cell biology; Biology; Protein biosynthesis","score_opus":0.035712599723971075,"score_gpt":0.34704776604194965,"score_spread":0.3113351663179786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280572101","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020186682,0.84329903,0.00039395384,0.0000284546,0.000061036364,0.15323594,0.00031322386,0.00013943408,0.0005102403],"genre_scores_gemma":[0.0084443,0.26544896,0.027498275,0.0001417442,0.0010804614,0.693944,0.0006616164,0.0011679864,0.0016126819],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99796665,0.00012584624,0.0005364373,0.0006746821,0.00038893078,0.00030744853],"domain_scores_gemma":[0.9987186,0.00021692908,0.00056909054,0.00036526195,0.00005414094,0.00007593301],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035376585,0.00041533794,0.0012092176,0.00018778763,0.00007718153,0.000037178717,0.00019540377,0.0008999328,0.000094091825],"category_scores_gemma":[0.00017710813,0.0004000557,0.0003213945,0.00018686455,0.000040980874,0.000042165797,0.00012554815,0.0015915493,4.748387e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040374533,0.00016428424,0.0000016666414,0.06363318,0.00007526952,0.00006609944,0.00007053476,0.000004152381,0.36974943,0.000011711634,0.000049124195,0.5657708],"study_design_scores_gemma":[0.0005652099,0.00013453525,6.3621826e-8,0.0043910346,0.00009957115,0.000030201505,0.000010648438,0.00015393693,0.3081089,0.000013884647,0.6861991,0.00029287496],"about_ca_topic_score_codex":0.00001467297,"about_ca_topic_score_gemma":0.000004308252,"teacher_disagreement_score":0.68615,"about_ca_system_score_codex":0.00037301934,"about_ca_system_score_gemma":0.0002791973,"threshold_uncertainty_score":0.99984515},"labels":[],"label_agreement":null},{"id":"W4282046759","doi":"10.1038/s41596-022-00711-9","title":"Author Correction: Full-length sequencing of circular DNA viruses and extrachromosomal circular DNA using CIDER-Seq","year":2022,"lang":"en","type":"erratum","venue":"Nature Protocols","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Extrachromosomal DNA; Circular DNA; DNA; DNA sequencing; Computational biology; Biology; Genetics; Genome; Gene; Plasmid","score_opus":0.06464965441568563,"score_gpt":0.32015253048806463,"score_spread":0.255502876072379,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282046759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.54579884,0.025067985,0.00015013116,0.001577856,0.05822374,0.32871178,0.0027014432,0.0023390164,0.03542922],"genre_scores_gemma":[0.6418511,0.00048755953,0.002434006,0.002669173,0.026777416,0.28034726,0.0012832518,0.00017542795,0.04397477],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99640626,0.00037113935,0.0007087102,0.0010410856,0.00089337124,0.0005794529],"domain_scores_gemma":[0.99829245,0.00023949229,0.00076154596,0.00023106585,0.0003332631,0.00014217792],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00059782015,0.0006448866,0.0009371144,0.0000962669,0.001299066,0.00015172186,0.0005065285,0.0014484206,0.001119801],"category_scores_gemma":[0.0004985441,0.0003342991,0.00038828107,0.00093957735,0.00029667187,0.00024722246,0.00052025216,0.0030342292,0.000007089531],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023582536,0.00038161915,0.0036889957,0.0011470824,0.000620517,0.00016850719,0.00043658004,0.000042051885,0.79591286,0.00028722116,0.18512833,0.011950436],"study_design_scores_gemma":[0.00029678506,0.0012535375,0.0073039955,0.0008735978,0.00023466938,0.00046389588,0.0008254451,0.00028099256,0.0072275354,0.00041961446,0.9796968,0.0011231338],"about_ca_topic_score_codex":0.0003765724,"about_ca_topic_score_gemma":0.0003136175,"teacher_disagreement_score":0.7945685,"about_ca_system_score_codex":0.00050116715,"about_ca_system_score_gemma":0.0001935972,"threshold_uncertainty_score":0.9999109},"labels":[],"label_agreement":null},{"id":"W4283017342","doi":"10.1038/s41596-022-00710-w","title":"Using MetaboAnalyst 5.0 for LC–HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1509,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill Genome Centre; McGill University","funders":"National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Génome Québec; Genome Canada","keywords":"Metabolomics; Computer science; Protocol (science); Metadata; Exploratory data analysis; Data mining; Data science; Bioinformatics; Biology; World Wide Web; Medicine","score_opus":0.16995606885856676,"score_gpt":0.45211171843386916,"score_spread":0.28215564957530237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283017342","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000005936714,0.93016106,0.017010273,0.000010596676,0.00019352364,0.04893257,0.0036276022,0.00001205238,0.000046413777],"genre_scores_gemma":[0.000009888524,0.8733818,0.095999986,0.000048658243,0.00035637117,0.027204165,0.0028815812,0.00006603764,0.00005154455],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99719054,0.0001820044,0.0008768433,0.0011177622,0.00027109095,0.00036176108],"domain_scores_gemma":[0.99750084,0.000034431312,0.0011810431,0.0010258416,0.0001766614,0.00008116864],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00093242177,0.0006038771,0.0018778449,0.00011468582,0.00018089643,0.00007142105,0.0008838049,0.0007142471,0.000010320947],"category_scores_gemma":[0.00044263358,0.0004786026,0.000386203,0.0004360364,0.00009954206,0.000015215552,0.0009613905,0.00055691815,2.0641353e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003124601,0.0005036263,0.000026849886,0.015786013,0.0031280937,0.0000025420984,0.000021518757,0.000009393178,0.0036525538,0.004719048,0.00067668967,0.9711612],"study_design_scores_gemma":[0.00089433434,0.00020011293,0.0000072293715,0.00047975025,0.0024038095,0.000028653876,0.000025181453,0.0005129671,0.00061300426,0.0001309521,0.99423814,0.00046587453],"about_ca_topic_score_codex":0.000014205251,"about_ca_topic_score_gemma":0.000050964012,"teacher_disagreement_score":0.99356145,"about_ca_system_score_codex":0.000113163806,"about_ca_system_score_gemma":0.00062024966,"threshold_uncertainty_score":0.9997666},"labels":[],"label_agreement":null},{"id":"W4283800505","doi":"10.1038/s41596-022-00705-7","title":"Practical and concise synthesis of nucleoside analogs","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Canadian Glycomics Network; Michael Smith Health Research BC; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Québec Consortium for Drug Discovery","keywords":"Nucleoside; Combinatorial chemistry; Nucleoside analogue; Chemistry; Oligonucleotide; Nucleobase; Enantioselective synthesis; Nucleotide; Stereochemistry; Organic chemistry; DNA; Biochemistry; Catalysis","score_opus":0.06399971449985828,"score_gpt":0.45273771901945825,"score_spread":0.38873800451959994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283800505","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000057363836,0.9662223,0.000014305459,0.00006837104,0.000021455176,0.0321045,0.00012363528,0.00000874659,0.0014309458],"genre_scores_gemma":[0.000023009728,0.9154394,0.0010245335,0.00008808972,0.000114685645,0.08293608,0.00014741477,0.00005590433,0.00017084213],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99814916,0.000300995,0.0003686973,0.0005763553,0.00033820927,0.00026660488],"domain_scores_gemma":[0.99889135,0.00014266952,0.00023449298,0.00052590674,0.000068508576,0.00013704642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038852647,0.00029548386,0.00081426004,0.00007648953,0.000059698286,0.000024589572,0.0003450402,0.0010960026,0.00012731306],"category_scores_gemma":[0.0013545684,0.00023377159,0.00043816402,0.00017754409,0.0001749144,0.00000208951,0.00061820477,0.0011440441,0.0000036932734],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000137121,0.00021016468,0.0000048470956,0.01681092,0.0004246324,0.000050364353,0.0000029610128,3.0893723e-8,0.0033914894,0.0004989855,0.010188397,0.9682801],"study_design_scores_gemma":[0.00014704393,0.00020492845,6.3187315e-7,0.0011178909,0.0001678098,0.00010403041,0.000002899819,4.919146e-7,0.010671075,0.00002527616,0.98732066,0.00023728306],"about_ca_topic_score_codex":0.0000036584727,"about_ca_topic_score_gemma":0.0000013792373,"teacher_disagreement_score":0.97713226,"about_ca_system_score_codex":0.000021495869,"about_ca_system_score_gemma":0.00050842186,"threshold_uncertainty_score":0.95329285},"labels":[],"label_agreement":null},{"id":"W4294308857","doi":"10.1038/s41596-022-00729-z","title":"Principles of reproducible metabolite profiling of enriched lymphocytes in tumors and ascites from human ovarian cancer","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency; Camosun College; Spinal Cord Injury BC; University of Victoria","funders":"Canadian Institutes of Health Research; Cancer Prevention and Research Institute of Texas; National Cancer Institute; U.S. Department of Health and Human Services; Government of Canada; U.S. Department of Defense","keywords":"Metabolomics; Metabolome; Immune system; Biology; Flow cytometry; Mass cytometry; Computational biology; Tumor microenvironment; Metabolite; Ovarian cancer; Cancer research; Bioinformatics; Cancer; Immunology; Biochemistry; Genetics; Gene","score_opus":0.07091065583121017,"score_gpt":0.3899378263626288,"score_spread":0.3190271705314186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294308857","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002678989,0.93682855,6.3701606e-7,0.000006606543,0.0002836591,0.061648205,0.00037569515,0.00003036217,0.0005584041],"genre_scores_gemma":[0.00015632749,0.80753416,0.00064699346,0.000018915918,0.00007463846,0.1901637,0.00052387564,0.00008075838,0.0008006233],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962364,0.0007635405,0.0014787328,0.0010182715,0.00011788883,0.000385167],"domain_scores_gemma":[0.99670744,0.0004675509,0.0016104865,0.001093882,0.000103887716,0.000016774738],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012420511,0.00050464727,0.0027080784,0.00043610932,0.000101935824,0.000013427033,0.00075520563,0.0011294183,0.00075835444],"category_scores_gemma":[0.0005088396,0.00042034805,0.00029718826,0.00064203615,0.00028274755,0.000077711426,0.000577589,0.0018840481,0.0000031140448],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006070604,0.00083475554,0.0061687357,0.08702038,0.0031352125,0.000028832554,0.0014419977,0.00001436278,0.107314825,0.012835055,0.00018005594,0.78041875],"study_design_scores_gemma":[0.0011934881,0.00008082684,0.000311472,0.006902554,0.000294224,0.000011352676,0.00003196337,1.9011365e-7,0.059617266,0.00019746281,0.93099594,0.00036324977],"about_ca_topic_score_codex":0.0007105413,"about_ca_topic_score_gemma":0.000040609713,"teacher_disagreement_score":0.9308159,"about_ca_system_score_codex":0.00025014472,"about_ca_system_score_gemma":0.0009478715,"threshold_uncertainty_score":0.9998248},"labels":[],"label_agreement":null},{"id":"W4303446666","doi":"10.1038/s41596-022-00741-3","title":"Enzyme-free targeted DNA demethylation using CRISPR–dCas9-based steric hindrance to identify DNA methylation marks causal to altered gene expression","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"DNA demethylation; Biology; DNA methylation; CRISPR; Epigenetics; DNA; Genetics; Transcription (linguistics); Methylation; Gene; Molecular biology; Gene expression","score_opus":0.04234329875881832,"score_gpt":0.43447926800779496,"score_spread":0.39213596924897665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4303446666","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005378809,0.6980621,0.19595969,0.0000418854,0.0009394182,0.10391759,0.0003906338,0.00009134605,0.000059432426],"genre_scores_gemma":[0.0036353099,0.17578778,0.2211359,0.0018409534,0.0072947047,0.5784634,0.009625248,0.0014424477,0.00077426137],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99643195,0.0004482272,0.0008221628,0.0011628589,0.00059959694,0.0005352245],"domain_scores_gemma":[0.99781525,0.00006382368,0.00039365047,0.0013148013,0.00015644367,0.0002560494],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00068439293,0.0006952916,0.00094975386,0.00038540983,0.00020319512,0.00011665388,0.0008427438,0.0011336087,0.00013406746],"category_scores_gemma":[0.0005486757,0.00068590185,0.000400473,0.0006745697,0.000016519904,0.000012616103,0.0005898864,0.0008823593,0.000009511699],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020096781,0.00007800435,0.0000057037346,0.004411198,0.00011249587,0.000011905877,0.000048956517,0.0036707856,0.8051684,0.0000018395406,0.0028940197,0.18339574],"study_design_scores_gemma":[0.00044376322,0.00022793021,0.000031410524,0.001425276,0.000121868296,0.000011503136,0.0000035820965,0.00013266363,0.29175743,0.000007754626,0.7052215,0.00061534875],"about_ca_topic_score_codex":0.000008440593,"about_ca_topic_score_gemma":0.000010925318,"teacher_disagreement_score":0.70232743,"about_ca_system_score_codex":0.00021296296,"about_ca_system_score_gemma":0.00032165129,"threshold_uncertainty_score":0.9995592},"labels":[],"label_agreement":null},{"id":"W4304778195","doi":"10.1038/s41596-022-00743-1","title":"Isolation of ready-made rat microvessels and its applications in effective in vivo vascularization and in angiogenic studies in vitro","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Angiogenesis and VEGF in Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Rehabilitation Institute; Heart and Stroke Foundation; University Health Network; Toronto General Hospital; University of Toronto; Stem Cell Network","funders":"Canadian Institutes of Health Research; Juvenile Diabetes Research Foundation Canada; Canada First Research Excellence Fund; Breakthrough T1D Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"In vivo; In vitro; Isolation (microbiology); Cell biology; Biology; Computational biology; Biomedical engineering; Medicine; Bioinformatics; Biochemistry; Biotechnology","score_opus":0.030062487142751032,"score_gpt":0.3826195267461501,"score_spread":0.352557039603399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4304778195","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00209346,0.94166166,0.000024099358,0.0000046693813,0.000017261345,0.056121767,0.000056065554,0.000002238917,0.000018781859],"genre_scores_gemma":[0.003942553,0.81553614,0.00012242522,0.000018668003,0.00004085223,0.18008232,0.00020885431,0.000026283082,0.000021905136],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986048,0.00026305756,0.00042887038,0.00046572983,0.0000901019,0.00014746601],"domain_scores_gemma":[0.9994569,0.000091293005,0.0002166655,0.0001759965,0.0000404038,0.000018775641],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040450273,0.00022626671,0.00068601966,0.00028214348,0.000022713652,0.000008228078,0.00010971217,0.00053430593,0.0000023528264],"category_scores_gemma":[0.0001057548,0.00020535412,0.0000950869,0.0005188174,0.000036917078,0.000007652203,0.0001354629,0.00031135618,9.856106e-8],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000684901,0.00072536553,0.008300877,0.050948102,0.0004978508,0.0000162438,0.00075155764,0.00007984787,0.48159257,0.0002925722,0.00012708433,0.45598304],"study_design_scores_gemma":[0.0025713902,0.00027890416,0.0014387529,0.0071378336,0.00016682521,0.000018095901,0.00016880858,0.000037368958,0.07272142,0.00016235054,0.9144545,0.00084371964],"about_ca_topic_score_codex":0.000013070864,"about_ca_topic_score_gemma":0.0001507826,"teacher_disagreement_score":0.91432744,"about_ca_system_score_codex":0.00010909434,"about_ca_system_score_gemma":0.000097568096,"threshold_uncertainty_score":0.83740985},"labels":[],"label_agreement":null},{"id":"W4309821904","doi":"10.1038/s41596-022-00764-w","title":"Longitudinal interrogation of sympathetic neural circuits and hemodynamics in preclinical models","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Neuroscience of respiration and sleep","field":"Neuroscience","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Libin Cardiovascular Institute of Alberta; University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Optogenetics; Neuroscience; Blood pressure; Hemodynamics; Spinal cord injury; Spinal cord; Baroreflex; Rostral ventrolateral medulla; Baroreceptor; Anesthesia; Internal medicine; Biology; Heart rate","score_opus":0.22136455190887325,"score_gpt":0.450886355176177,"score_spread":0.22952180326730373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309821904","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009632857,0.7266847,0.00026705823,0.0001301101,0.0008958893,0.26767808,0.00019071679,0.00018395185,0.003006209],"genre_scores_gemma":[0.013198267,0.8263519,0.00010170476,0.0005304633,0.000106265215,0.15934986,0.000021334143,0.00011604353,0.00022419394],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968335,0.00060702703,0.00082032086,0.00086503226,0.000606348,0.00026776586],"domain_scores_gemma":[0.9983972,0.0005231522,0.0005574665,0.00040791617,0.000027212645,0.000087081426],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005495811,0.00031230578,0.0009453131,0.00037682318,0.00008853458,0.000079758036,0.0006672325,0.00043195218,0.000031830077],"category_scores_gemma":[0.00069470133,0.00026406738,0.00023126119,0.0007768324,0.00018744596,0.0002968045,0.00028828523,0.0019152131,0.0000020419807],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001438684,0.00021156427,0.000016381207,0.0045412043,0.0000023359755,0.000039891904,0.000090518995,0.00009995235,0.00007314588,0.0039619715,0.0000052771384,0.9909434],"study_design_scores_gemma":[0.0014495307,0.0013507772,0.000026045524,0.008500116,0.0001111463,0.00043780744,0.00002585661,0.04838377,0.00026566826,0.0028858248,0.935497,0.0010664753],"about_ca_topic_score_codex":0.0000014920107,"about_ca_topic_score_gemma":0.0000063223274,"teacher_disagreement_score":0.98987687,"about_ca_system_score_codex":0.000122461,"about_ca_system_score_gemma":0.0002719126,"threshold_uncertainty_score":0.99998116},"labels":[],"label_agreement":null},{"id":"W4310060405","doi":"10.1038/s41596-022-00773-9","title":"Optimized prime editing in monocot plants using PlantPegDesigner and engineered plant prime editors (ePPEs)","year":2022,"lang":"en","type":"review","venue":"Nature Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Genetics","funders":"","keywords":"Prime (order theory); Computer science; Construct (python library); Protocol (science); Rice plant; Computational biology; Biotechnology; Biology; Mathematics; Programming language; Agronomy","score_opus":0.029353713549659363,"score_gpt":0.3789345485147056,"score_spread":0.3495808349650462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310060405","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000424165,0.9435668,0.0013657656,0.000005151715,0.0009990066,0.053451408,0.00042068167,0.000047951784,0.000100812395],"genre_scores_gemma":[0.000050898503,0.8897815,0.01002964,0.000045109326,0.008238186,0.08934712,0.0020734768,0.00029529055,0.00013880641],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975865,0.00016127784,0.0006267015,0.00079502526,0.00029723148,0.0005332812],"domain_scores_gemma":[0.9990352,0.00008375349,0.00026518683,0.0004596908,0.000021569667,0.0001346349],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00047890167,0.0006279308,0.0011279376,0.00025466701,0.00009213174,0.000063545966,0.0004071566,0.0012139825,0.000028467495],"category_scores_gemma":[0.00015605215,0.00057674694,0.00021735055,0.00018152822,0.000029898747,0.000006515048,0.00033807906,0.0013652921,0.0000014286287],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010146494,0.0006954803,0.000119219636,0.04041745,0.001683221,0.0006355519,0.00039365655,0.0054386887,0.021471605,0.00003855836,0.01514392,0.912948],"study_design_scores_gemma":[0.0008826139,0.00012649962,0.000003037251,0.003280877,0.00008353688,0.00020325145,0.000012688799,0.0003999241,0.0036800245,0.0000023679404,0.9906962,0.0006289726],"about_ca_topic_score_codex":0.000009475241,"about_ca_topic_score_gemma":0.000002192449,"teacher_disagreement_score":0.97555226,"about_ca_system_score_codex":0.000092232534,"about_ca_system_score_gemma":0.00025906702,"threshold_uncertainty_score":0.9996684},"labels":[],"label_agreement":null},{"id":"W4385987168","doi":"10.1038/s41596-023-00866-z","title":"On-chip electrocatalytic microdevices","year":2023,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Electrocatalysts for Energy Conversion","field":"Energy","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Education and Child Care","funders":"University Grants Committee; National Natural Science Foundation of China; City University of Hong Kong","keywords":"Protocol (science); Computer science; Nanotechnology; Standardization; Reliability (semiconductor); Materials science","score_opus":0.03313460739578018,"score_gpt":0.3574674218433793,"score_spread":0.32433281444759915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385987168","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[5.5489386e-7,0.90800977,0.0000028107415,0.000035964735,0.00024330475,0.07702079,0.000012004938,0.0009801489,0.013694641],"genre_scores_gemma":[0.0000035898684,0.7502533,0.000058661248,0.00027675438,0.0006653197,0.23927075,0.00075551897,0.00046759238,0.008248526],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99528396,0.00027056743,0.0009321103,0.0013787033,0.0010524323,0.0010821972],"domain_scores_gemma":[0.99663705,0.00064459833,0.0007159173,0.0016042958,0.00018754778,0.00021060914],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0006124071,0.0011715645,0.0024011896,0.0008635324,0.00020556807,0.00015374878,0.0017919046,0.002748436,0.00013557839],"category_scores_gemma":[0.00050745194,0.0009144693,0.0011168991,0.0019675018,0.00006431284,0.0001463472,0.00025032155,0.0040448466,0.007163556],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007670511,0.00014393755,2.4133735e-7,0.042497132,0.00088053546,0.0001393872,0.000016504178,0.0000072986604,0.000028494185,0.066182345,0.019418478,0.8706089],"study_design_scores_gemma":[0.00033801573,0.00025140322,1.4693393e-7,0.02418694,0.00040901738,0.000053690008,0.00000109937,0.0000036506601,0.0005203924,0.0024234466,0.97093713,0.0008750686],"about_ca_topic_score_codex":0.000076591685,"about_ca_topic_score_gemma":0.00024798376,"teacher_disagreement_score":0.95151865,"about_ca_system_score_codex":0.00087214325,"about_ca_system_score_gemma":0.0008217184,"threshold_uncertainty_score":0.9993306},"labels":[],"label_agreement":null},{"id":"W4386979884","doi":"10.1038/s41596-023-00876-x","title":"Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins","year":2023,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Michael Smith Health Research BC; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Natural Science Foundation of China; National Science Foundation","keywords":"Computer science; Web server; Selection (genetic algorithm); Intrinsically disordered proteins; Data science; Range (aeronautics); Computational model; Machine learning; Artificial intelligence; Biology; World Wide Web; The Internet","score_opus":0.030101494095411335,"score_gpt":0.3692986903625368,"score_spread":0.33919719626712547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386979884","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00001865634,0.50825965,0.06701991,0.00010225626,0.00032582413,0.42244267,0.0017920956,0.000020882435,0.000018047378],"genre_scores_gemma":[0.00016594978,0.28560823,0.005009516,0.000038612292,0.001391851,0.70639783,0.0011122215,0.00008912797,0.00018669276],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99889904,0.000063863925,0.000496299,0.0002725139,0.00013279487,0.00013548357],"domain_scores_gemma":[0.9987286,0.00036185773,0.0004428659,0.00020380341,0.00024856368,0.000014335124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004099401,0.0002013499,0.00044199213,0.000057342088,0.00007693351,0.000032174416,0.00022812984,0.0005977228,6.45937e-7],"category_scores_gemma":[0.0006732092,0.00011025527,0.00019708165,0.00021216892,0.000068308225,0.000006911788,0.000081029626,0.0002919364,7.087556e-8],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003049634,0.0000397885,0.000024739857,0.013072644,0.000337547,9.301032e-8,0.00002458461,0.00043491018,0.0003337131,0.0013286212,0.0008092495,0.9832891],"study_design_scores_gemma":[0.0007999999,0.00038690434,0.00010666913,0.001533898,0.0001567263,0.000007081027,0.000010272159,0.0008481186,0.00021012353,0.00081492454,0.9950034,0.00012186206],"about_ca_topic_score_codex":0.000010704387,"about_ca_topic_score_gemma":0.00008597134,"teacher_disagreement_score":0.99419415,"about_ca_system_score_codex":0.000020752383,"about_ca_system_score_gemma":0.00031010873,"threshold_uncertainty_score":0.4610186},"labels":[],"label_agreement":null},{"id":"W4387501935","doi":"10.1038/s41596-023-00886-9","title":"Exposure protocol for ecotoxicity testing of microplastics and nanoplastics","year":2023,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Microplastics and Plastic Pollution","field":"Environmental Science","cited_by":89,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Horizon 2020 Framework Programme; Saastamoisen säätiö; OLVI-Säätiö; Killam Trusts; European Commission","keywords":"Microplastics; Ecotoxicity; Protocol (science); Environmental science; Biology; Environmental chemistry; Chemistry; Medicine; Toxicity","score_opus":0.0859464882050426,"score_gpt":0.38473191455612005,"score_spread":0.29878542635107747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387501935","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000015413423,0.017958736,0.0013795325,0.0000027105543,0.00012718848,0.97918916,0.00097467273,0.00008865491,0.00027778454],"genre_scores_gemma":[6.453366e-7,0.012259951,0.014754833,0.000011569466,0.00017478853,0.9724,0.00003209132,0.000107719425,0.000258399],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99732685,0.00010143684,0.00098785,0.0006998533,0.00038267102,0.0005013386],"domain_scores_gemma":[0.99646986,0.0019786973,0.0009638845,0.0003652824,0.000063261716,0.00015902212],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005329481,0.00058810326,0.001310125,0.00013137734,0.00017359335,0.00006497235,0.00041694206,0.0012560704,0.00007938298],"category_scores_gemma":[0.0022934498,0.00045877555,0.0002164638,0.00060732773,0.00021858707,0.000066157576,0.00040727298,0.00092075934,0.00007164811],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018226382,0.00035766675,0.0004066387,0.1611587,0.00018733378,0.000019858897,0.000050163082,0.00008398785,0.0006265803,0.00044174344,0.013700029,0.822785],"study_design_scores_gemma":[0.00069940183,0.00049258256,0.000029377148,0.016018359,0.00017962004,0.00003518665,0.00000141201,0.0002575975,0.00016661418,0.00026112303,0.981395,0.00046374043],"about_ca_topic_score_codex":0.000007554659,"about_ca_topic_score_gemma":0.000026734497,"teacher_disagreement_score":0.96769494,"about_ca_system_score_codex":0.00015091003,"about_ca_system_score_gemma":0.00018902426,"threshold_uncertainty_score":0.9997864},"labels":[],"label_agreement":null},{"id":"W4388125647","doi":"10.1038/s41596-023-00898-5","title":"EpiTyping: analysis of epigenetic aberrations in parental imprinting and X-chromosome inactivation using RNA-seq","year":2023,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Genetic Syndromes and Imprinting","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Horizon 2020 Framework Programme; Azrieli Foundation; Israel Science Foundation; United States-Israel Binational Science Foundation; Rosetrees Trust; European Commission","keywords":"Epigenetics; Biology; Genomic imprinting; Imprinting (psychology); Genetics; Computational biology; Induced pluripotent stem cell; Bacterial artificial chromosome; X-inactivation; Gene; DNA methylation; Genome; Embryonic stem cell; X chromosome; Gene expression","score_opus":0.06462302765635829,"score_gpt":0.4095442324961036,"score_spread":0.3449212048397453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388125647","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018927976,0.93818593,0.0004283046,0.000008886847,0.00011209459,0.04212366,0.00006502895,0.000022152943,0.00012595896],"genre_scores_gemma":[0.023580233,0.9508834,0.0031610196,0.000021603713,0.00031656865,0.02112265,0.0006178656,0.00015506515,0.0001415955],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99808526,0.0001432594,0.00075809704,0.00057627365,0.00016931152,0.00026779654],"domain_scores_gemma":[0.9988061,0.00004534041,0.00059708994,0.0004088759,0.00008716591,0.000055406334],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00038624174,0.00030550023,0.0010254976,0.00054518745,0.000064996864,0.000041569558,0.00021858342,0.0008159339,0.000007997417],"category_scores_gemma":[0.00029302028,0.00029033172,0.0004147306,0.0012074786,0.000048832822,0.000005226735,0.00027750374,0.00045340986,0.0000012404623],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001330552,0.00019737265,0.009386983,0.02466464,0.004533981,0.0000079716165,0.00017951474,0.00084839016,0.03731401,0.0001376503,0.00002612359,0.92269003],"study_design_scores_gemma":[0.0041242186,0.0015561202,0.06963102,0.076573454,0.018471582,0.00023729897,0.0005942657,0.01008786,0.021597004,0.00059232506,0.789786,0.0067488593],"about_ca_topic_score_codex":0.000054369724,"about_ca_topic_score_gemma":0.000066225184,"teacher_disagreement_score":0.9159412,"about_ca_system_score_codex":0.000052150794,"about_ca_system_score_gemma":0.00019463508,"threshold_uncertainty_score":0.9999549},"labels":[],"label_agreement":null},{"id":"W4388834338","doi":"10.1038/s41596-023-00901-z","title":"Co-fractionation–mass spectrometry to characterize native mitochondrial protein assemblies in mammalian neurons and brain","year":2023,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick; University of Regina","funders":"Canadian Institutes of Health Research; Government of Canada; ALS Society of Canada","keywords":"Proteome; Proteomics; Fractionation; Computational biology; Mass spectrometry; Biology; Human brain; Chemistry; Biochemistry; Neuroscience; Chromatography","score_opus":0.017512896102682758,"score_gpt":0.31984006238680196,"score_spread":0.3023271662841192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388834338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8520145,0.00004310002,0.0030085295,0.016594827,0.0013631671,0.12059613,0.00032991526,0.00020848545,0.005841356],"genre_scores_gemma":[0.48960754,0.000023808054,0.0202952,0.012710047,0.0073873345,0.42108813,0.0024607482,0.00027670283,0.04615048],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985304,0.00020069307,0.00023607271,0.00053608476,0.0002045102,0.00029225956],"domain_scores_gemma":[0.9993856,0.000049992115,0.00008870109,0.0002505974,0.00011473445,0.000110379755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024702007,0.00019087827,0.0001913115,0.0003435015,0.000090592825,0.00006264431,0.00015913392,0.0004773269,0.00006672108],"category_scores_gemma":[0.001190529,0.00018854425,0.00004902468,0.0006670092,0.000041807554,0.000013817604,0.000058488793,0.0004733293,0.00006438079],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046062595,0.00003592953,0.0009643471,0.000026223403,0.000010927998,0.000021379785,0.000053182346,0.0000032904197,0.9775329,0.00048211156,0.019928198,0.00048085907],"study_design_scores_gemma":[0.0015651137,0.0007576441,0.036154307,0.000042623516,0.000003183587,0.000022985247,0.00005209322,0.000012076427,0.45052838,0.0003299625,0.51022863,0.00030300836],"about_ca_topic_score_codex":0.000006588964,"about_ca_topic_score_gemma":0.000059071343,"teacher_disagreement_score":0.52700454,"about_ca_system_score_codex":0.000026395712,"about_ca_system_score_gemma":0.00009065436,"threshold_uncertainty_score":0.7688612},"labels":[],"label_agreement":null},{"id":"W4391023230","doi":"10.1038/s41596-023-00930-8","title":"Production and use of antigen tetramers to study antigen-specific B cells","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"National Institute of Allergy and Infectious Diseases; U.S. Department of Health and Human Services","keywords":"Antigen; Tetramer; B-cell receptor; Biotinylation; Alexa Fluor; Flow cytometry; Antibody; Streptamer; Streptavidin; Antigen-presenting cell; Molecular biology; B cell; Biology; Chemistry; Immune system; T cell; Cell biology; Immunology; Fluorescence; Biochemistry; Biotin","score_opus":0.048965928523172816,"score_gpt":0.34647499808754983,"score_spread":0.297509069564377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391023230","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00095051806,0.8592847,0.0000029009257,0.000028652923,0.0015165437,0.13795798,0.00009796329,0.0001106874,0.000050048788],"genre_scores_gemma":[0.00054396444,0.9457639,0.00020058375,0.000028513417,0.00013380316,0.050325584,0.00008650007,0.00010195132,0.0028152016],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99667895,0.00060866686,0.0009167442,0.001198948,0.00009096863,0.0005057232],"domain_scores_gemma":[0.99837077,0.00013601987,0.0004018741,0.00089934,0.00015125566,0.000040770006],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00044671455,0.0007076003,0.0020137602,0.0006018855,0.00015220302,0.000072166295,0.0004970623,0.0019307677,0.00012747505],"category_scores_gemma":[0.00009796293,0.00050530164,0.0003391225,0.0007406208,0.00025415485,0.000100925725,0.0003595361,0.0026036315,0.00066908554],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020142141,0.0012850133,0.000112571826,0.008192986,0.001957379,0.00005582448,0.0006401588,2.4574732e-7,0.2003022,0.00010692749,0.0340532,0.75309205],"study_design_scores_gemma":[0.00030843142,0.0007529931,0.000024616475,0.005359263,0.0002798909,0.00011377522,0.000063200016,1.1526248e-8,0.017769579,0.000012349973,0.9748488,0.00046706013],"about_ca_topic_score_codex":0.000018135082,"about_ca_topic_score_gemma":0.000008319103,"teacher_disagreement_score":0.9407956,"about_ca_system_score_codex":0.0000589169,"about_ca_system_score_gemma":0.00015529164,"threshold_uncertainty_score":0.9997399},"labels":[],"label_agreement":null},{"id":"W4391807885","doi":"10.1038/s41596-023-00950-4","title":"Web-based multi-omics integration using the Analyst software suite","year":2024,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of British Columbia; McGill University","funders":"Breakthrough T1D Canada; Canadian Institutes of Health Research; Canadian HIV Trials Network, Canadian Institutes of Health Research; Government of Canada; Diabetes Canada; Juvenile Diabetes Research Foundation Canada","keywords":"Workflow; Computer science; Data integration; Omics; Suite; Software; Software suite; Protocol (science); Data mining; Bioinformatics; Database; Biology","score_opus":0.017154323937920588,"score_gpt":0.32255956235137684,"score_spread":0.30540523841345624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391807885","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.019013662,0.0025836166,0.9148606,0.0007881888,0.00064474193,0.061376944,0.00017697988,0.00014748816,0.00040777624],"genre_scores_gemma":[0.8749412,0.00002047405,0.0925705,0.0034252007,0.0014576225,0.025965063,0.0006701749,0.00009863968,0.00085116166],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99926066,0.000037099064,0.0002015041,0.0002098647,0.00011113768,0.00017972625],"domain_scores_gemma":[0.99947333,0.000018061151,0.00006089374,0.00032582728,0.00008202579,0.000039873325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029987458,0.00014823579,0.00009998606,0.000042532432,0.00010910626,0.00017223539,0.00022269017,0.00041463625,0.000009409551],"category_scores_gemma":[0.00004144053,0.00009523774,0.00012272887,0.00016409183,0.000048531558,0.0000054994457,0.000060365965,0.00046149082,0.0000066850284],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044729718,0.00020937384,0.0027009007,0.0008368881,0.0004851679,0.000021726237,0.0003652841,0.011296805,0.80442524,0.0027029584,0.035037827,0.14147054],"study_design_scores_gemma":[0.0008850933,0.00014366361,0.00016408152,0.00025517808,0.0000536408,0.000018866505,0.000046222158,0.38266465,0.082522266,0.00025723217,0.5326268,0.00036230922],"about_ca_topic_score_codex":0.0000040595064,"about_ca_topic_score_gemma":0.00004352637,"teacher_disagreement_score":0.8559275,"about_ca_system_score_codex":0.000028431565,"about_ca_system_score_gemma":0.00018792953,"threshold_uncertainty_score":0.38836825},"labels":[],"label_agreement":null},{"id":"W4392190604","doi":"10.1038/s41596-024-00964-6","title":"High-throughput fabrication of antimicrobial phage microgels and example applications in food decontamination","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brockhouse Institute for Materials Research; Population Health Research Institute; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Human decontamination; Antimicrobial; Throughput; Nanotechnology; Fabrication; Microbiology; Biology; Materials science; Medicine; Computer science; Engineering; Waste management","score_opus":0.057840206264817916,"score_gpt":0.4287996148394706,"score_spread":0.3709594085746527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392190604","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001376452,0.8863816,0.00007302222,0.00011322563,0.000040702074,0.11266545,0.000324015,0.000030951385,0.00023334193],"genre_scores_gemma":[0.00033752684,0.86857986,0.0018655584,0.000058242877,0.00035882922,0.12686156,0.0010209722,0.00006533222,0.0008521052],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99814874,0.00009937766,0.00067308097,0.0005440277,0.00029051022,0.0002442414],"domain_scores_gemma":[0.9989817,0.00017435117,0.00024617746,0.00033223288,0.00018210021,0.000083426574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031613358,0.00032694906,0.0012372405,0.00045564843,0.00004483384,0.000037934344,0.00018777631,0.00072284177,0.000026095351],"category_scores_gemma":[0.00006103333,0.00023495339,0.00023033917,0.0006797867,0.00010135591,0.00006606146,0.00013751081,0.0012442726,0.000025888528],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005844462,0.00032022572,0.00009136883,0.111807756,0.00022250968,0.000018028233,0.00008999786,4.015168e-8,0.00029233532,0.0049913866,0.0020367831,0.8800711],"study_design_scores_gemma":[0.0004584117,0.00019349584,0.00014573913,0.013509901,0.00025782664,0.00008505754,0.0000042390507,0.0000019528545,0.0009431706,0.0002583397,0.98395383,0.00018801106],"about_ca_topic_score_codex":0.00008785746,"about_ca_topic_score_gemma":0.000039159688,"teacher_disagreement_score":0.9819171,"about_ca_system_score_codex":0.00012432794,"about_ca_system_score_gemma":0.00033168797,"threshold_uncertainty_score":0.9581121},"labels":[],"label_agreement":null},{"id":"W4393038507","doi":"10.1038/s41596-024-00954-8","title":"BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Center for Information Technology; National Human Genome Research Institute; University of Minnesota; Alzheimer’s Research UK; Alzheimer's Association; Weston Brain Institute; National Cancer Institute; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Genome-wide association study; Computer science; Python (programming language); Epistasis; Genetic association; Pipeline (software); Computational biology; Data mining; Biology; Single-nucleotide polymorphism; Genetics","score_opus":0.04317518424700288,"score_gpt":0.41558519211923955,"score_spread":0.37241000787223666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393038507","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007252607,0.92464006,0.018452356,0.000057497426,0.00030071373,0.0548076,0.0015580278,0.000047596088,0.000063604],"genre_scores_gemma":[0.00069969415,0.34015518,0.036470853,0.00052961556,0.0028690216,0.61104214,0.00687784,0.00023616546,0.001119485],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974148,0.00028373976,0.0008024065,0.0009725961,0.00013493226,0.00039151646],"domain_scores_gemma":[0.9982162,0.00024558394,0.00052629237,0.0007491623,0.00018323452,0.00007953437],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00040679245,0.0004909561,0.0013173646,0.00026965226,0.00013608919,0.00009179088,0.00040050296,0.0015125122,0.000030909378],"category_scores_gemma":[0.0008501462,0.00040205746,0.0017585333,0.00056193676,0.00003251104,0.0000020490438,0.00013319394,0.0008613395,0.000033359272],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004513363,0.00011492658,0.0004645249,0.0055385674,0.0057458263,0.000007042474,0.0000145987115,0.00016722456,0.00023375826,0.000015567983,0.0097151995,0.97793764],"study_design_scores_gemma":[0.00021737743,0.00013303739,0.00021969418,0.001203801,0.0040032435,0.0000047333647,0.0000019817508,0.00030545492,0.0000758866,0.00012124146,0.9932868,0.00042676358],"about_ca_topic_score_codex":0.000025686913,"about_ca_topic_score_gemma":0.00016308657,"teacher_disagreement_score":0.9835716,"about_ca_system_score_codex":0.000095516254,"about_ca_system_score_gemma":0.00052860373,"threshold_uncertainty_score":0.9998431},"labels":[],"label_agreement":null},{"id":"W4393259400","doi":"10.1038/s41596-024-00974-4","title":"A practical guide for the preparation of C1-labeled α-amino acids using aldehyde catalysis with isotopically labeled CO2","year":2024,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Chemical Reactions and Isotopes","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; University of Alberta","funders":"","keywords":"Phenylalanine; Amino acid; Yield (engineering); Aldehyde; Chemistry; Catalysis; Chemical synthesis; Combinatorial chemistry; Organic chemistry; Biochemistry; In vitro; Materials science","score_opus":0.1250433510286115,"score_gpt":0.5471219048310264,"score_spread":0.4220785538024149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393259400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.50791574,0.0029776306,0.05002127,0.023676163,0.0015552681,0.4040998,0.00055159646,0.0008512524,0.008351292],"genre_scores_gemma":[0.84036326,0.000042327923,0.022705162,0.0015472058,0.00074905535,0.1314343,0.00008054278,0.00006910737,0.0030090122],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99857575,0.00013094753,0.00040656756,0.00035833044,0.00023240148,0.00029598546],"domain_scores_gemma":[0.99765563,0.0015207517,0.00014577464,0.00028019596,0.00030203984,0.00009558118],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006131756,0.00020569976,0.0002911307,0.000069464375,0.00019882458,0.0000689132,0.00021652643,0.0006121157,0.00024246796],"category_scores_gemma":[0.0005535146,0.00012578399,0.00014127471,0.0004035169,0.00017385797,0.00019335354,0.00005747875,0.001233348,0.000010164638],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004007229,0.00086167123,0.0013137154,0.0007850217,0.0013611605,0.00002896481,0.0004684393,0.00024603147,0.938342,0.013087595,0.030886658,0.008611526],"study_design_scores_gemma":[0.0011319931,0.00031935138,0.00006641366,0.00009741484,0.00046590753,0.000046548834,0.000031789285,0.019632813,0.3423219,0.00024960158,0.6354845,0.00015176884],"about_ca_topic_score_codex":0.000016567481,"about_ca_topic_score_gemma":0.000037205788,"teacher_disagreement_score":0.60459787,"about_ca_system_score_codex":0.00009842918,"about_ca_system_score_gemma":0.0003502578,"threshold_uncertainty_score":0.5358352},"labels":[],"label_agreement":null},{"id":"W4394912734","doi":"10.1038/s41596-024-00979-z","title":"Luciferase- and HaloTag-based reporter assays to measure small-molecule-induced degradation pathway in living cells","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Protein Degradation and Inhibitors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"Deutsche Forschungsgemeinschaft","keywords":"Small molecule; Computational biology; CRISPR; HEK 293 cells; High-throughput screening; Synthetic biology; Proteomics; Cell biology; Protein degradation; Ternary complex; Cell culture; Biology; Chemistry; Molecular biology; Biochemistry; Genetics; Gene; Enzyme","score_opus":0.04151310621609912,"score_gpt":0.3417986249798247,"score_spread":0.3002855187637256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394912734","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014982458,0.86792666,0.0004812582,0.00014623179,0.000393957,0.12963575,0.00009282501,0.00009120531,0.0010822784],"genre_scores_gemma":[0.0029167212,0.23800161,0.0057841656,0.0038017554,0.002612681,0.73980844,0.001731581,0.0008811849,0.0044618524],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969849,0.00036516096,0.0007930831,0.0011371475,0.00034723958,0.00037248092],"domain_scores_gemma":[0.9985761,0.000038866798,0.0003286091,0.0007120269,0.00015555594,0.00018881715],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00095362624,0.0006176431,0.00082939,0.00034395326,0.000064308515,0.00019735604,0.00032455556,0.0017239649,0.000008888147],"category_scores_gemma":[0.00055425166,0.00050424354,0.00031008566,0.00046585055,0.000024607763,0.000007848965,0.00019652111,0.0010812818,0.000022796878],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011029883,0.00035363244,0.000032427284,0.02603112,0.00025787778,0.00022266508,0.000045159908,0.0000032321188,0.075182036,0.00010458609,0.012906448,0.8847505],"study_design_scores_gemma":[0.00024102358,0.00026695602,0.0000028456661,0.016810292,0.00007796265,0.00002567451,0.0000036018928,0.000010779888,0.063968815,0.0000067326782,0.91796774,0.0006175824],"about_ca_topic_score_codex":0.000007813051,"about_ca_topic_score_gemma":0.00008062964,"teacher_disagreement_score":0.9050613,"about_ca_system_score_codex":0.00010629523,"about_ca_system_score_gemma":0.0007245414,"threshold_uncertainty_score":0.9997409},"labels":[],"label_agreement":null},{"id":"W4398143165","doi":"10.1038/s41596-024-00985-1","title":"Tutorial: design, production and testing of oncolytic viruses for cancer immunotherapy","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Association for Business Economics; Ottawa Hospital; Beatrice Hunter Cancer Research Institute; University of Ottawa; Dalhousie University","funders":"CIHR Skin Research Training Centre; Agence Nationale de la Recherche; Government of Canada","keywords":"Oncolytic virus; Immunotherapy; Cancer immunotherapy; Cancer; Medicine; Virotherapy; Computational biology; Cancer research; Immune system; Immunology; Biology; Internal medicine","score_opus":0.12876015760024223,"score_gpt":0.4824092442878089,"score_spread":0.35364908668756667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398143165","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000016137541,0.88299024,0.0000578934,0.000018385083,0.0002798916,0.116518416,0.00007603243,0.000032379714,0.000010650825],"genre_scores_gemma":[0.0000044009353,0.710155,0.0015679874,0.000034196833,0.0016003705,0.2861945,0.000021685311,0.00015561965,0.00026619638],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99826306,0.00019256133,0.0004261612,0.0006415752,0.0002122218,0.00026442308],"domain_scores_gemma":[0.998853,0.0000874926,0.0002716445,0.0004474561,0.00029300668,0.00004734289],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007917062,0.00036244886,0.0007558594,0.00012513659,0.000053751057,0.00005428962,0.0002914618,0.0008713948,0.000003938964],"category_scores_gemma":[0.0005835125,0.00027135224,0.00022424929,0.00029390783,0.00008597905,0.0000040051787,0.00007877676,0.0005459642,0.00000128726],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012085114,0.000057067347,0.0000023429639,0.023387613,0.00044373295,0.0000010037606,0.000013548551,0.000004244559,0.062269896,0.000007654803,0.0033221117,0.90928227],"study_design_scores_gemma":[0.0002710289,0.002238366,1.498692e-7,0.008284638,0.00016037328,0.00000979176,0.0000011078167,0.000003106993,0.07856549,0.00007586519,0.9101387,0.00025137558],"about_ca_topic_score_codex":0.000007122829,"about_ca_topic_score_gemma":0.000023307775,"teacher_disagreement_score":0.9090309,"about_ca_system_score_codex":0.00007066181,"about_ca_system_score_gemma":0.0011645582,"threshold_uncertainty_score":0.9999739},"labels":[],"label_agreement":null},{"id":"W4403458588","doi":"10.1038/s41596-024-01070-3","title":"Measuring carbohydrate recognition profile of lectins on live cells using liquid glycan array (LiGA)","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women and Children’s Health Research Institute; University of Alberta","funders":"National Institute of General Medical Sciences; Canadian Glycomics Network; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Glycan; LIGA; Carbohydrate; Glycomics; Lectin; Biology; Computational biology; Chemistry; Cell biology; Biochemistry; Glycoprotein; Medicine; Pathology","score_opus":0.10226038431383969,"score_gpt":0.39695997395130833,"score_spread":0.2946995896374687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403458588","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004504671,0.85905033,0.000056191744,0.000018143786,0.00034090737,0.13628347,0.0004693053,0.000055676053,0.0032754897],"genre_scores_gemma":[0.0011624652,0.7922376,0.002066552,0.00009990991,0.0020572785,0.19844574,0.0013227044,0.000423817,0.0021839452],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974032,0.0003211146,0.0005819867,0.00079293415,0.0005057876,0.0003949541],"domain_scores_gemma":[0.99853826,0.000025917516,0.00037737025,0.0005784144,0.0003556149,0.00012443602],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00047805134,0.00049234246,0.0008282302,0.0003265975,0.000091443,0.00007591353,0.00037465748,0.0014654376,0.00006261279],"category_scores_gemma":[0.0002131722,0.0003966135,0.0005177691,0.00048354594,0.000064795,0.0000057781294,0.00013876939,0.0015102488,0.00013288934],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008169671,0.00034490362,6.777587e-7,0.059963785,0.000711183,0.000043826698,0.0000785012,0.000013212811,0.6164126,0.000022493587,0.0015905504,0.32000133],"study_design_scores_gemma":[0.00018515112,0.0007459426,5.8092084e-8,0.013695682,0.00013548601,0.000012807976,0.0000048834877,0.000008131199,0.42657855,0.00001313959,0.5582919,0.00032825835],"about_ca_topic_score_codex":0.000019573952,"about_ca_topic_score_gemma":0.000018572628,"teacher_disagreement_score":0.55670136,"about_ca_system_score_codex":0.00012006209,"about_ca_system_score_gemma":0.0007934837,"threshold_uncertainty_score":0.9998486},"labels":[],"label_agreement":null},{"id":"W4403686609","doi":"10.1038/s41596-024-01054-3","title":"Outcome devaluation as a method for identifying goal-directed behaviors in rats","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Neurotransmitter Receptor Influence on Behavior","field":"Neuroscience","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Outcome (game theory); Devaluation; Biology; Computer science; Bioinformatics; Psychology; Medicine; Mathematics; Economics; Mathematical economics; Exchange rate","score_opus":0.2236545548353558,"score_gpt":0.5588960416279831,"score_spread":0.33524148679262733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403686609","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000039823928,0.44620734,0.00015705761,0.000074095944,0.0012846257,0.5508726,0.0003102413,0.00090335734,0.00015080867],"genre_scores_gemma":[0.0000046142463,0.110865444,0.0076246313,0.00041987092,0.00018876811,0.8794776,0.00004533306,0.00033204717,0.0010416692],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9928723,0.0013250366,0.0018184424,0.0020756295,0.0011282248,0.00078035775],"domain_scores_gemma":[0.9974433,0.00076743076,0.00062424917,0.00084743876,0.0001477498,0.00016978694],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0016594263,0.0010027778,0.0020836177,0.0011398126,0.00014177957,0.00054846896,0.0013386033,0.0017037914,0.00012728154],"category_scores_gemma":[0.0019261321,0.0008176031,0.0010269945,0.002227985,0.000069249654,0.0004128081,0.00017465667,0.0039446736,0.00074082596],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005406126,0.00024056282,0.000030293331,0.042735994,0.00001579505,0.00021930093,0.00015261363,5.7554774e-7,0.017052762,0.00036378304,0.000536562,0.9385977],"study_design_scores_gemma":[0.00071983185,0.00016727536,0.000013423687,0.03153654,0.0010664524,0.00018336807,0.0000033502213,0.00002797459,0.01617714,0.0005526235,0.9484824,0.0010696378],"about_ca_topic_score_codex":0.000012461975,"about_ca_topic_score_gemma":0.000016843886,"teacher_disagreement_score":0.94794583,"about_ca_system_score_codex":0.0005465911,"about_ca_system_score_gemma":0.0005855041,"threshold_uncertainty_score":0.9995922},"labels":[],"label_agreement":null},{"id":"W4404572797","doi":"10.1038/s41596-024-01079-8","title":"Biolayer interferometry for measuring the kinetics of protein–protein interactions and nanobody binding","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; U.S. Department of Health and Human Services; Government of Canada; National Institutes of Health; Michael Smith Health Research BC","keywords":"Throughput; Protein–protein interaction; Computational biology; Computer science; Kinetics; High-throughput screening; Interferometry; Epitope; Biological system; Chemistry; Biology; Physics; Biochemistry; Antibody","score_opus":0.1206676342487598,"score_gpt":0.4720697396889193,"score_spread":0.3514021054401595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404572797","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006858407,0.81824785,0.00004959279,0.00043658432,0.000107548825,0.18034743,0.00019042425,0.00003631485,0.0005156875],"genre_scores_gemma":[0.00067771616,0.45076767,0.00240013,0.00006348522,0.0012638617,0.527608,0.00013581921,0.00020612185,0.016877247],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99789107,0.000120468634,0.0006880532,0.00048021707,0.00046788508,0.00035228202],"domain_scores_gemma":[0.99867386,0.00026742695,0.00027149188,0.00040682618,0.00025885695,0.00012154787],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005171861,0.00043515716,0.0012891642,0.0005123287,0.000098197204,0.00009177132,0.000333701,0.0005687142,0.000043227163],"category_scores_gemma":[0.00046100753,0.00022149744,0.0005918043,0.00062042626,0.00014823023,0.00004897154,0.00031733452,0.0024802096,0.000024574867],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003581779,0.00018738577,0.0000075316757,0.22448108,0.0009709791,0.00002219445,0.00006024243,1.7097365e-8,0.012027045,0.0015629176,0.0010305675,0.7592919],"study_design_scores_gemma":[0.00025020278,0.00053866534,0.0000020933005,0.09326679,0.00044407073,0.00013160698,0.000010599566,0.0000044739477,0.006743532,0.00016430161,0.8982523,0.00019132657],"about_ca_topic_score_codex":0.000009238322,"about_ca_topic_score_gemma":0.0000048206416,"teacher_disagreement_score":0.89722174,"about_ca_system_score_codex":0.00010748755,"about_ca_system_score_gemma":0.0002045222,"threshold_uncertainty_score":0.9998211},"labels":[],"label_agreement":null},{"id":"W4405473693","doi":"10.1038/s41596-024-01095-8","title":"A consensus platform for antibody characterization","year":2024,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McGill University; Structural Genomics Consortium; Montreal Neurological Institute and Hospital","funders":"National Institute on Aging; National Centre for the Replacement, Refinement and Reduction of Animals in Research; ALS Society of Canada; Motor Neurone Disease Association; Michael J. Fox Foundation for Parkinson's Research; Bill and Melinda Gates Foundation; ALS Association; Mitacs; National Institute of General Medical Sciences; National Institute for Health and Care Research; U.S. Department of Health and Human Services; Ontario Genomics; Genome Canada","keywords":"Antibody; Computer science; Characterization (materials science); Computational biology; Scalability; Immunology; Biology; Nanotechnology","score_opus":0.1141361094202095,"score_gpt":0.5175486919988047,"score_spread":0.4034125825785952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405473693","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000014132918,0.7782705,0.000029577424,0.00034193142,0.0001975719,0.21884854,0.0009570087,0.00010624486,0.0012472159],"genre_scores_gemma":[2.2766491e-7,0.75335574,0.00049502676,0.0001843332,0.001380461,0.22282839,0.006916607,0.000106726584,0.014732518],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99777156,0.000039244234,0.0006336996,0.000597559,0.0004942201,0.0004637426],"domain_scores_gemma":[0.99877316,0.00020505588,0.00020520827,0.00037268392,0.00024555207,0.00019832807],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003323068,0.0005137028,0.0017759454,0.00035117206,0.00009650043,0.00010344959,0.00022276644,0.0013659765,0.00009209298],"category_scores_gemma":[0.00019437345,0.0003123754,0.0009009291,0.00043516888,0.00007810695,0.000033588934,0.00011402602,0.0020640034,0.00032294774],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003196439,0.000096773,0.0000046281143,0.2148902,0.0004269471,0.00014470659,0.000013289548,2.1394118e-9,0.00016991554,0.0023463676,0.0050868243,0.7765007],"study_design_scores_gemma":[0.00042287266,0.0003923166,0.0000067260266,0.049269706,0.0007690227,0.00043877587,0.0000010962631,0.000019124838,0.000022431072,0.0001426823,0.94822407,0.00029118708],"about_ca_topic_score_codex":0.0000023971522,"about_ca_topic_score_gemma":8.538576e-7,"teacher_disagreement_score":0.9431372,"about_ca_system_score_codex":0.00012103777,"about_ca_system_score_gemma":0.000896935,"threshold_uncertainty_score":0.9999328},"labels":[],"label_agreement":null},{"id":"W4405733155","doi":"10.1038/s41596-024-01131-7","title":"Author Correction: Production and use of antigen tetramers to study antigen-specific B cells","year":2024,"lang":"en","type":"erratum","venue":"Nature Protocols","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Antigen; Computational biology; Biology; Cell biology; Molecular biology; Chemistry; Immunology","score_opus":0.026415332965745664,"score_gpt":0.3205391645609451,"score_spread":0.29412383159519945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405733155","genre_codex":"protocol","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.055658568,0.10572419,0.0000782211,0.0014890867,0.34737334,0.48700222,0.0004476777,0.00082941004,0.0013972867],"genre_scores_gemma":[0.014694627,0.0019191413,0.0002755589,0.00019848008,0.0009666881,0.060479887,0.00024546267,0.00023853671,0.92098165],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969952,0.00064861076,0.00071234157,0.0010224042,0.00015417844,0.000467234],"domain_scores_gemma":[0.99828094,0.00015161742,0.0003412354,0.00089074054,0.00030152776,0.000033955937],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0006354932,0.00060293573,0.00090820325,0.0006964763,0.00028222424,0.00013824654,0.00038773404,0.002209583,0.00029365905],"category_scores_gemma":[0.00028169874,0.00051019323,0.00021272911,0.0006794809,0.00023930296,0.0001721752,0.00018295148,0.003995943,0.00023266986],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021238648,0.00048559974,0.00023446194,0.0001593527,0.0006784317,0.000014075238,0.001335304,8.869695e-7,0.20192431,0.000009919741,0.77840495,0.014628835],"study_design_scores_gemma":[0.00041947133,0.0017433665,0.0051777805,0.0010965165,0.000043739372,0.000077170625,0.00031796948,3.1083673e-7,0.11888902,0.000009110438,0.87178206,0.0004434669],"about_ca_topic_score_codex":0.000048612153,"about_ca_topic_score_gemma":0.000017850156,"teacher_disagreement_score":0.91958433,"about_ca_system_score_codex":0.00007824094,"about_ca_system_score_gemma":0.00024928385,"threshold_uncertainty_score":0.99973494},"labels":[],"label_agreement":null},{"id":"W4406699349","doi":"10.1038/s41596-024-01115-7","title":"Photothermal nanofiber-mediated photoporation for gentle and efficient intracellular delivery of macromolecules","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"National Natural Science Foundation of China","keywords":"Photothermal therapy; Nanofiber; Nanotechnology; Electroporation; Materials science; Intracellular; Photothermal effect; Biophysics; Chemistry; Biology; Biochemistry","score_opus":0.014364573621114226,"score_gpt":0.33101091107451136,"score_spread":0.31664633745339715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406699349","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00097282155,0.94151586,0.00036602851,0.00000496025,0.00009173803,0.056432277,0.00045834752,0.0000100067,0.00014795792],"genre_scores_gemma":[0.00033871847,0.91003454,0.0008459938,0.00010415371,0.00018775805,0.08606267,0.0017352934,0.00005491154,0.0006359472],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99860907,0.00008696524,0.00046194918,0.0005001202,0.0001313184,0.00021060345],"domain_scores_gemma":[0.99899095,0.0000476366,0.0003426993,0.00035109452,0.00021770298,0.000049910126],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019299689,0.00033242386,0.00068824476,0.00011609027,0.000049580474,0.000029323766,0.00026692802,0.0010580886,0.000010434275],"category_scores_gemma":[0.00009008311,0.00027783998,0.0003110894,0.00012524378,0.000065975626,0.00000241595,0.00012330519,0.00024169701,0.000002912991],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005993908,0.00042797465,0.0000150476035,0.06877824,0.00080976204,0.0000131995985,0.000045465807,0.000010823525,0.26324597,0.00012871876,0.0048516784,0.66107374],"study_design_scores_gemma":[0.00047342823,0.00037988086,9.718647e-7,0.0050986977,0.00017156344,0.000009234414,0.0000069005455,0.000031103897,0.13750307,0.0000112846055,0.85601586,0.00029800113],"about_ca_topic_score_codex":0.0000036682625,"about_ca_topic_score_gemma":0.000004035745,"teacher_disagreement_score":0.85116416,"about_ca_system_score_codex":0.000018912067,"about_ca_system_score_gemma":0.00035210603,"threshold_uncertainty_score":0.9999674},"labels":[],"label_agreement":null},{"id":"W4406893069","doi":"10.1038/s41596-024-01110-y","title":"fMRI data acquisition and analysis for task-free, anesthetized rats","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Functional Brain Connectivity Studies","field":"Neuroscience","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Douglas Mental Health University Institute","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Neuroscience; Task (project management); Plant biology; Computer science; Computational biology; Biology","score_opus":0.10098762855086273,"score_gpt":0.4227655705008637,"score_spread":0.321777941950001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406893069","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[8.9068294e-8,0.79267466,0.0006817462,0.0010893589,0.00014855327,0.20157018,0.003249251,0.00013801621,0.0004481508],"genre_scores_gemma":[0.0000013377536,0.5675884,0.0010202918,0.0018048943,0.00026799287,0.42726454,0.0007114891,0.000043976634,0.0012971183],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99651444,0.00045278828,0.00048203339,0.0017779209,0.0004492274,0.0003235738],"domain_scores_gemma":[0.98711544,0.010142885,0.0004273567,0.0021091783,0.0001379256,0.00006722573],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00079875207,0.0005139366,0.0018752319,0.000603556,0.00036006965,0.00019864175,0.0014769821,0.0007665158,0.000017279695],"category_scores_gemma":[0.017691746,0.00040403992,0.00046008694,0.0019655968,0.00012427985,0.00025569723,0.0011659559,0.000844192,0.000007302061],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030055773,0.0002619692,0.000023470418,0.06597328,0.00122044,0.000035638008,0.000022092327,0.0000024099675,0.000053602416,0.004793377,0.14116256,0.7861506],"study_design_scores_gemma":[0.0005023254,0.00008083935,0.000007577471,0.004007958,0.0018078992,0.00001785584,0.0000011280448,0.000039892966,0.000045924542,0.0010566238,0.99207556,0.00035638732],"about_ca_topic_score_codex":0.0000020016878,"about_ca_topic_score_gemma":0.000012932019,"teacher_disagreement_score":0.85091305,"about_ca_system_score_codex":0.00008671475,"about_ca_system_score_gemma":0.000297169,"threshold_uncertainty_score":0.99984115},"labels":[],"label_agreement":null},{"id":"W4407237484","doi":"10.1038/s41596-024-01125-5","title":"Laser microsurgery for presynaptic interrogation","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Neonatal and fetal brain pathology","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Interrogation; Microsurgery; Neuroscience; Computational biology; Computer science; Biology; Medicine; Surgery; History","score_opus":0.03926581823212019,"score_gpt":0.4275382766888142,"score_spread":0.388272458456694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407237484","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[1.6654246e-7,0.77361494,0.00015438997,0.00008239496,0.0002358072,0.22432764,0.00014377589,0.00007640349,0.0013644611],"genre_scores_gemma":[6.970031e-7,0.3813466,0.0017344856,0.0007012475,0.0004108205,0.59890956,0.00069584855,0.000050554,0.016150203],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99849004,0.00007859996,0.0005205619,0.0005021773,0.00013803235,0.00027058413],"domain_scores_gemma":[0.9986178,0.0005073825,0.0002422888,0.00041183823,0.00014463776,0.000076020784],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00027648726,0.00035613315,0.0016015637,0.00026536224,0.00004747301,0.00002170115,0.00018561099,0.0015453319,0.00004014126],"category_scores_gemma":[0.0004036385,0.00025175742,0.0007629914,0.0002612563,0.00005561371,0.000040662224,0.00009694843,0.0011691247,0.000048352213],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009204131,0.000086620596,0.0000014191402,0.112105265,0.0001166618,0.00003765364,0.000006943267,5.6993503e-9,0.000004892075,0.00014683069,0.005285888,0.8821158],"study_design_scores_gemma":[0.00056309474,0.00019385222,0.0000019204997,0.04864592,0.0004624262,0.00016267544,0.0000020367856,0.0000015210287,0.00007199208,0.00015767131,0.9495529,0.00018397541],"about_ca_topic_score_codex":3.5141966e-7,"about_ca_topic_score_gemma":0.0000012313733,"teacher_disagreement_score":0.94426703,"about_ca_system_score_codex":0.00012352793,"about_ca_system_score_gemma":0.00070305425,"threshold_uncertainty_score":0.99999344},"labels":[],"label_agreement":null},{"id":"W4408029127","doi":"10.1038/s41596-024-01136-2","title":"A guide to reverse metabolomics—a framework for big data discovery strategy","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute on Aging; U.S. Department of Health and Human Services; National Institutes of Health; Fonds de Recherche du Québec - Santé; National Institute of Diabetes and Digestive and Kidney Diseases; Gordon and Betty Moore Foundation; U.S. Department of Energy","keywords":"Metabolomics; Drug discovery; Computational biology; Data science; Big data; Computer science; Biology; Bioinformatics; Data mining","score_opus":0.08168930387397524,"score_gpt":0.4485133356473202,"score_spread":0.366824031773345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408029127","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[1.0323728e-7,0.872507,0.015470116,0.00013957653,0.00079404237,0.10598802,0.0041279285,0.000020827008,0.00095239223],"genre_scores_gemma":[1.1515849e-7,0.8009077,0.029983686,0.0007536342,0.0024788198,0.15435335,0.0021400703,0.00007698429,0.0093056485],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966136,0.00014677548,0.0007966573,0.0016392713,0.00022699227,0.00057671114],"domain_scores_gemma":[0.9962377,0.00018340029,0.00042497445,0.0028242934,0.00019641515,0.00013322255],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007531748,0.0007388573,0.001978389,0.00024500705,0.00014762652,0.00019594152,0.0020868343,0.0018306031,0.0000056835734],"category_scores_gemma":[0.002990007,0.0005804991,0.00061675627,0.00055069086,0.000049966522,0.000009575489,0.0017996243,0.0009419292,0.000008791317],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013188095,0.00010462263,8.5480366e-7,0.01658977,0.0010298159,0.0000035613887,0.0000024085373,6.8864836e-7,0.0001727706,0.00852794,0.2840233,0.68941236],"study_design_scores_gemma":[0.0003151513,0.00022116442,4.1426927e-7,0.0046237414,0.0006380936,0.000005051403,0.000007072137,2.8163578e-7,0.00024934649,0.0008819397,0.992463,0.0005947487],"about_ca_topic_score_codex":0.000009471404,"about_ca_topic_score_gemma":0.000046886522,"teacher_disagreement_score":0.70843965,"about_ca_system_score_codex":0.00004743185,"about_ca_system_score_gemma":0.0010747457,"threshold_uncertainty_score":0.99966466},"labels":[],"label_agreement":null},{"id":"W4409302720","doi":"10.1038/s41596-025-01157-5","title":"Transcriptomic profiling of individual bacteria by MATQ-seq","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Deutsche Forschungsgemeinschaft","keywords":"Computational biology; Transcriptome; Profiling (computer programming); Biology; RNA-Seq; Bioinformatics; Computer science; Genetics; Gene expression; Gene","score_opus":0.020925393860996882,"score_gpt":0.34899433280054326,"score_spread":0.32806893893954636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409302720","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00004725624,0.9442882,0.000019227951,0.000008668848,0.00016227436,0.05341522,0.0014560493,0.000004949086,0.0005981577],"genre_scores_gemma":[0.000033709504,0.9200374,0.0014902812,0.00007334099,0.00020752897,0.07671777,0.0008553397,0.000051220726,0.0005334145],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99828964,0.00012233605,0.00057858555,0.00055459264,0.00017669542,0.00027817016],"domain_scores_gemma":[0.99899465,0.000026417803,0.00033079943,0.000500439,0.000097023905,0.000050670365],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00025602654,0.00044534562,0.0011188956,0.00008303491,0.000053694745,0.000033586097,0.0006855021,0.0013286399,0.000010118084],"category_scores_gemma":[0.00006234912,0.00036847414,0.00046026567,0.00014953529,0.00006810367,5.571047e-7,0.0002244478,0.0005168555,0.000002341868],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115555886,0.00024719405,0.000058838003,0.08224477,0.0018471353,0.000002595692,0.000044762357,3.91938e-7,0.08488924,0.0002805436,0.023261642,0.8070073],"study_design_scores_gemma":[0.00030741276,0.00015497126,0.000006670335,0.0036916314,0.0002733963,0.0000050621074,0.0000041025105,5.6008982e-8,0.018655904,0.00003665712,0.97654796,0.00031616562],"about_ca_topic_score_codex":0.0000012355864,"about_ca_topic_score_gemma":0.0000019009157,"teacher_disagreement_score":0.95328635,"about_ca_system_score_codex":0.000016162247,"about_ca_system_score_gemma":0.00042636524,"threshold_uncertainty_score":0.9999679},"labels":[],"label_agreement":null},{"id":"W4410629957","doi":"10.1038/s41596-025-01143-x","title":"Integrating optical neuroscience tools into touchscreen operant systems","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute on Alcohol Abuse and Alcoholism; U.S. Department of Health and Human Services; Government of Canada; National Institutes of Health; Canadian HIV Trials Network, Canadian Institutes of Health Research; Canadian Institutes of Health Research; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Touchscreen; Neuroscience; Operant conditioning; Computer science; Psychology; Human–computer interaction","score_opus":0.1435774172639183,"score_gpt":0.4868933403380522,"score_spread":0.34331592307413394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410629957","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[8.200279e-7,0.776489,0.00036566122,0.000037407073,0.00082931237,0.20920424,0.00018336727,0.00018731032,0.012702853],"genre_scores_gemma":[0.000014098298,0.7017244,0.0007055775,0.0002916663,0.0003661214,0.29487863,0.000018864184,0.000078373545,0.0019222886],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9935632,0.0010125493,0.0010608418,0.0018079338,0.0015749335,0.0009805473],"domain_scores_gemma":[0.9961736,0.0017184686,0.00030530937,0.0012298963,0.00020839623,0.00036431852],"candidate_categories":["metaresearch","metaepi_narrow","scholarly_communication","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00096216425,0.00080352736,0.0019001802,0.0005345605,0.0004545983,0.0015683561,0.0035181711,0.0014318686,0.000037259695],"category_scores_gemma":[0.010291035,0.00056147506,0.00055016385,0.0020972765,0.0003403663,0.00029608625,0.0011147875,0.0046281614,0.00010215119],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029836181,0.000144994,0.0000019344345,0.03576107,0.000009665906,0.00010626367,0.000036179146,0.0000040884256,0.0050970404,0.008842435,0.0011625808,0.9488039],"study_design_scores_gemma":[0.0001874662,0.00018785657,4.6201012e-7,0.026112081,0.00004044011,0.000057736386,0.000005546013,0.00013425852,0.0060825106,0.000040828716,0.96662855,0.0005222631],"about_ca_topic_score_codex":0.000019042856,"about_ca_topic_score_gemma":0.000004456385,"teacher_disagreement_score":0.96546596,"about_ca_system_score_codex":0.00032096566,"about_ca_system_score_gemma":0.0017117689,"threshold_uncertainty_score":0.99986446},"labels":[],"label_agreement":null},{"id":"W4410897340","doi":"10.1038/s41596-025-01213-0","title":"Author Correction: Transcriptomic profiling of individual bacteria by MATQ-seq","year":2025,"lang":"en","type":"erratum","venue":"Nature Protocols","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Profiling (computer programming); Computational biology; Transcriptome; Biology; Bioinformatics; Computer science; Genetics; Gene; Gene expression","score_opus":0.012537967339187831,"score_gpt":0.3005509686072451,"score_spread":0.2880130012680573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410897340","genre_codex":"protocol","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005836062,0.0009950157,0.00027380412,0.0029299608,0.11560831,0.43637106,0.0055395733,0.0006793853,0.43176684],"genre_scores_gemma":[0.0040108566,0.000025555422,0.0022938256,0.0025531321,0.0009218653,0.1136103,0.008115621,0.000116289826,0.86835253],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99783134,0.0005137706,0.00049905013,0.0005026714,0.00026483083,0.00038834088],"domain_scores_gemma":[0.99879813,0.000108159446,0.0003752404,0.00061844103,0.000030586332,0.00006946381],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0005459671,0.0003907532,0.0006656071,0.00009107294,0.00023612814,0.000034643133,0.0013020308,0.0032329797,0.007746789],"category_scores_gemma":[0.00010291186,0.0003757043,0.00018227544,0.00033922782,0.00031727232,0.0001085961,0.00042815699,0.0051195445,0.00009416872],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016940055,0.00016279673,0.00023945078,0.00030152567,0.0000649203,0.0000014109119,0.00016000755,0.0000029723428,0.033142224,0.00003669019,0.9647475,0.0009711175],"study_design_scores_gemma":[0.0004020775,0.00025591455,0.0018175234,0.00034731036,0.000058864916,0.0000073064803,0.000021115638,0.000013961172,0.016195118,0.0004934109,0.9800494,0.00033803188],"about_ca_topic_score_codex":0.00007132217,"about_ca_topic_score_gemma":0.00030018468,"teacher_disagreement_score":0.43658572,"about_ca_system_score_codex":0.0001586719,"about_ca_system_score_gemma":0.00018174495,"threshold_uncertainty_score":0.99986947},"labels":[],"label_agreement":null},{"id":"W4411286464","doi":"10.1038/s41596-025-01194-0","title":"High-throughput multiplex voltage-clamp/current-clamp evaluation of acutely isolated neurons","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Neuroscience and Neuropharmacology Research","field":"Neuroscience","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; Canadian Institutes of Health Research; U.S. Department of Veterans Affairs","keywords":"Clamp; Voltage clamp; Multiplex; Current clamp; Throughput; Patch clamp; Current (fluid); Biophysics; Biology; Chemistry; Neuroscience; Computer science; Electrophysiology; Bioinformatics; Engineering; Electrical engineering; Telecommunications","score_opus":0.19209594726371199,"score_gpt":0.5194954156078359,"score_spread":0.32739946834412387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411286464","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010137638,0.63643295,0.00006159534,0.00013880839,0.0030628426,0.3585798,0.0007522765,0.00033144315,0.0005389094],"genre_scores_gemma":[0.00023521278,0.77278024,0.000029676627,0.0005110039,0.0003107354,0.22488298,0.0000327884,0.0001223869,0.0010949601],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9888443,0.003578086,0.001445068,0.0023735208,0.0026723787,0.0010866636],"domain_scores_gemma":[0.9942165,0.0023135596,0.0011383254,0.0014062583,0.00068025634,0.0002451094],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0017720136,0.00097557413,0.002239919,0.0010923945,0.00041962983,0.0001780094,0.0028502406,0.0012669871,0.00025469792],"category_scores_gemma":[0.00788944,0.00078642333,0.0007654748,0.0038912117,0.000597443,0.00044027227,0.000915901,0.0056685107,0.00017597205],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001691652,0.00074241846,0.0000037182147,0.019219108,0.00003411722,0.000089357396,0.000023786466,0.000008176355,0.043721948,0.00035687146,0.0063822647,0.92924905],"study_design_scores_gemma":[0.0016833963,0.00045128723,0.000007941237,0.008040532,0.00062277215,0.000054764205,7.7721745e-7,0.00038731686,0.029911608,0.00020343861,0.958018,0.00061813515],"about_ca_topic_score_codex":0.0000048262214,"about_ca_topic_score_gemma":0.0000025487973,"teacher_disagreement_score":0.9516358,"about_ca_system_score_codex":0.00022007074,"about_ca_system_score_gemma":0.0032662617,"threshold_uncertainty_score":0.9994587},"labels":[],"label_agreement":null},{"id":"W4411583311","doi":"10.1038/s41596-025-01182-4","title":"Consensus guidelines for the use of concurrent TMS-fMRI in cognitive and clinical neuroscience","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Transcranial Magnetic Stimulation Studies","field":"Neuroscience","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Rogue Research (Canada)","funders":"","keywords":"Neuroscience; Cognitive neuroscience; Plant biology; Cognition; Clinical neuroscience; Computational neuroscience; Open science; Psychology; Systems neuroscience; Cognitive science; Biology; Neurology; Central nervous system","score_opus":0.6250120155607636,"score_gpt":0.5962589546299903,"score_spread":0.028753060930773233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411583311","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000003049665,0.7433397,0.0005785826,0.0005590307,0.0006134568,0.25414133,0.0006905553,0.000033037493,0.000041222287],"genre_scores_gemma":[0.00006199961,0.8710938,0.00042890126,0.0013137491,0.00010761278,0.12677634,0.0000024618953,0.000022186046,0.0001929286],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966894,0.00051300804,0.0013903261,0.0008013899,0.00035119164,0.00025472124],"domain_scores_gemma":[0.97184545,0.026773306,0.0005482628,0.00028729803,0.00049711065,0.000048597336],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00067000004,0.0003512984,0.0013427925,0.00016157096,0.00012635464,0.00007358299,0.0004097443,0.00043726148,0.0000035614137],"category_scores_gemma":[0.056796417,0.0002122471,0.00032160382,0.000710551,0.0008593286,0.00004481978,0.00017975729,0.0009374983,7.8518406e-7],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000110256005,0.00010854271,0.000069817375,0.00705582,0.000011614386,0.0000055930673,0.000015721147,0.0000058038254,0.000014878995,0.00074100535,0.0017721175,0.9900888],"study_design_scores_gemma":[0.001390707,0.00023729765,0.00039551608,0.015662137,0.00024214784,0.000008616789,0.0000034159582,0.0003179335,0.000008422925,0.000050542047,0.9814834,0.0001998671],"about_ca_topic_score_codex":0.0000051312586,"about_ca_topic_score_gemma":0.0000138871665,"teacher_disagreement_score":0.98988897,"about_ca_system_score_codex":0.000014874588,"about_ca_system_score_gemma":0.00040385022,"threshold_uncertainty_score":0.95114857},"labels":[],"label_agreement":null},{"id":"W4412419522","doi":"10.1038/s41596-025-01220-1","title":"scGPT: end-to-end protocol for fine-tuned retinal cell type annotation","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vector Institute; University of Toronto; University Health Network","funders":"","keywords":"Annotation; End-to-end principle; Protocol (science); Computational biology; Computer science; Retinal; Cell biology; Biology; Computer network; Artificial intelligence; Biochemistry; Medicine","score_opus":0.03998188567168037,"score_gpt":0.4031350232760198,"score_spread":0.3631531376043394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412419522","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[5.0548425e-7,0.099335454,0.00073883776,0.00003738741,0.00019742988,0.89706695,0.00024818323,0.00003737498,0.0023378944],"genre_scores_gemma":[0.0000011648466,0.013222223,0.0043207547,0.0002408546,0.00079677225,0.9764125,0.0010304515,0.00008885513,0.0038864387],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976221,0.0001533616,0.00064678746,0.000899156,0.00025069213,0.00042790727],"domain_scores_gemma":[0.998406,0.00006783168,0.0003340798,0.00064157485,0.00042120545,0.00012931146],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003505254,0.0005898533,0.0009192454,0.00016010486,0.0001308155,0.000098040466,0.0006074759,0.0017614786,0.000044922595],"category_scores_gemma":[0.00032000564,0.0004951502,0.0005111187,0.0003988753,0.000041401825,0.0000048186444,0.00010885947,0.0007403075,0.000019438636],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018370765,0.0004947051,0.000016933402,0.1096189,0.00016782228,0.000007570194,0.000021751443,0.0000037638824,0.010540495,0.00020190759,0.049647927,0.82744116],"study_design_scores_gemma":[0.0012051283,0.0009928612,0.0000015984164,0.0072681345,0.000118446165,0.000004989956,0.0000010472893,0.0000021196106,0.012779916,0.00003908389,0.9770794,0.00050728745],"about_ca_topic_score_codex":0.0000037254636,"about_ca_topic_score_gemma":0.000018324436,"teacher_disagreement_score":0.92743146,"about_ca_system_score_codex":0.000056945108,"about_ca_system_score_gemma":0.0010373683,"threshold_uncertainty_score":0.99975},"labels":[],"label_agreement":null},{"id":"W4414702500","doi":"10.1038/s41596-025-01270-5","title":"NanoVar: a comprehensive workflow for structural variant detection to uncover the genome’s hidden patterns","year":2025,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Canada Research Chairs; National Research Foundation Singapore","keywords":"Workflow; Genomics; Annotation; Software; DNA sequencing; Protocol (science); Human genome; Genome; Exome sequencing","score_opus":0.02345397099856318,"score_gpt":0.3497001689699575,"score_spread":0.3262461979713943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414702500","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006188842,0.8685322,0.00087997975,0.00006901379,0.0004701361,0.12914686,0.00076062506,0.0000072997905,0.00007200969],"genre_scores_gemma":[0.00032225886,0.6129739,0.0016183035,0.0010077002,0.001755942,0.38077947,0.00033611467,0.00009809849,0.0011081615],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99830633,0.00011721293,0.00039825076,0.00067989464,0.00014299904,0.00035530512],"domain_scores_gemma":[0.9986889,0.000092049406,0.00022649778,0.0006794209,0.0002500917,0.00006304861],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013487466,0.000486588,0.0007794612,0.00007590138,0.00023285885,0.00008205167,0.0006001436,0.0008260402,0.0000049809555],"category_scores_gemma":[0.00010080189,0.0003105146,0.00050863257,0.00019554247,0.00003120216,6.5255466e-7,0.00039818237,0.00043799533,0.0000041175244],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001382571,0.00001946193,0.000008945382,0.008543539,0.0007723785,0.0000030164363,0.000041347837,0.000010956311,0.0020390016,0.000065609885,0.0017094031,0.9866481],"study_design_scores_gemma":[0.0003065764,0.00026167257,0.00007808001,0.0014775046,0.00021618973,0.00002076552,0.000005639219,0.0000010639367,0.00034725887,0.00021079807,0.99671596,0.00035848306],"about_ca_topic_score_codex":0.0000075765533,"about_ca_topic_score_gemma":0.00006810863,"teacher_disagreement_score":0.99500656,"about_ca_system_score_codex":0.000058220543,"about_ca_system_score_gemma":0.00026270412,"threshold_uncertainty_score":0.9999347},"labels":[],"label_agreement":null},{"id":"W4415260489","doi":"10.1038/s41596-025-01297-8","title":"Publisher Correction: NanoVar: a comprehensive workflow for structural variant detection to uncover the genome’s hidden patterns","year":2025,"lang":"en","type":"erratum","venue":"Nature Protocols","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Workflow","score_opus":0.014590924530810479,"score_gpt":0.31716208412886454,"score_spread":0.3025711595980541,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415260489","genre_codex":"protocol","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00086466223,0.0038767343,0.066389024,0.0125304,0.24163194,0.6412631,0.0027248368,0.00029087404,0.030428408],"genre_scores_gemma":[0.0038896112,0.00025478436,0.003456598,0.011194675,0.018110989,0.24285112,0.0068229334,0.00020511786,0.71321416],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972032,0.00012283347,0.0005444413,0.0007302072,0.0007199839,0.0006793362],"domain_scores_gemma":[0.99739194,0.0000751545,0.0002477311,0.00092073216,0.0011441568,0.0002202847],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00037548543,0.0004994105,0.0004411985,0.00019631669,0.00033836905,0.00044343492,0.0010686582,0.0023966108,0.000047226804],"category_scores_gemma":[0.0008231239,0.00033928966,0.00033248914,0.00037279166,0.00011474337,0.0000110574065,0.00056956854,0.001822644,0.000012582499],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045973907,0.00002891813,0.00002574732,0.0005828982,0.00021966426,0.0000029148712,0.000059184895,0.0000072373527,0.0017363547,0.0000063104617,0.9506884,0.046182606],"study_design_scores_gemma":[0.0007635762,0.00081114296,0.00090347865,0.00028082097,0.000044011565,0.00002240866,0.000052482468,0.0001602031,0.0018149456,0.0003676873,0.9943597,0.00041957095],"about_ca_topic_score_codex":0.00004055784,"about_ca_topic_score_gemma":0.00044801287,"teacher_disagreement_score":0.68278575,"about_ca_system_score_codex":0.00014026058,"about_ca_system_score_gemma":0.0008063343,"threshold_uncertainty_score":0.9999059},"labels":[],"label_agreement":null},{"id":"W4415613956","doi":"10.1038/s41596-025-01253-6","title":"Comparing methods for preparing slippery liquid-like polydimethylsiloxane coatings","year":2025,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Nanofabrication and Lithography Techniques","field":"Engineering","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Australian Research Council; Engineering and Physical Sciences Research Council; Department of Education and Training; University of Sydney; Australian Institute of Nuclear Science and Engineering","keywords":"Polydimethylsiloxane; Reproducibility; Silane; Polymer; Covalent bond; Evaporation","score_opus":0.016532817844201315,"score_gpt":0.3901555428001648,"score_spread":0.3736227249559635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415613956","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00097107544,0.0010568186,0.87080544,0.00014101971,0.00036047713,0.08606903,0.000007882343,0.0030064245,0.03758183],"genre_scores_gemma":[0.13202924,0.000007923078,0.59504765,0.00055781344,0.00010491261,0.27158085,0.000016100188,0.000062427585,0.0005931311],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988365,0.00006733646,0.00037100902,0.00029856543,0.00010853814,0.0003180056],"domain_scores_gemma":[0.9991062,0.00023493012,0.0000654904,0.00040859624,0.00012060882,0.00006415362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000724811,0.0002267724,0.00034028938,0.00033014125,0.00011513876,0.000082146886,0.00035118923,0.0003886801,0.00000867907],"category_scores_gemma":[0.00014643626,0.000226059,0.00016602105,0.0006342259,0.00003193004,0.00013217106,0.00006776115,0.0005550129,0.0000017695676],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006229028,0.00022969153,0.0048503545,0.0038159506,0.00037048757,0.0000011768052,0.0006168686,0.00047540455,0.6472323,0.06284183,0.07004954,0.2088935],"study_design_scores_gemma":[0.00044276926,0.00006756795,0.00029970147,0.00028231592,0.000020331134,0.0000014853689,0.000013461061,0.0044133873,0.40779725,0.001230593,0.58519316,0.00023796908],"about_ca_topic_score_codex":0.0000059088757,"about_ca_topic_score_gemma":0.000002890776,"teacher_disagreement_score":0.51514363,"about_ca_system_score_codex":0.0000707683,"about_ca_system_score_gemma":0.000032577165,"threshold_uncertainty_score":0.92184186},"labels":[],"label_agreement":null}]}