{"meta":{"query_hash":"54a91fbd5ed8","filters":{"venue":"Pathogens and Immunity"},"cohort_total":12,"direct_labels_cover":0,"predictions_cover":12,"exported":12,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/54a91fbd5ed8","api":"https://metacan.xera.ac/api/v1/cohort?venue=Pathogens+and+Immunity"},"results":[{"id":"W2418594260","doi":"10.20411/pai.v1i1.104","title":"Nonhuman Primates and Humanized Mice for Studies of HIV-1 Integrase Inhibitors: A Review","year":2016,"lang":"en","type":"review","venue":"Pathogens and Immunity","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Integrase; Human immunodeficiency virus (HIV); Integrase inhibitor; Virology; Biology; Computational biology; Antiretroviral therapy; Viral load","score_opus":0.0764939837752569,"score_gpt":0.3775715423004838,"score_spread":0.3010775585252269,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2418594260","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004374869,0.9966584,0.0000062811996,0.0001621895,0.000057345627,0.002172464,0.00033063494,0.000023041472,0.00015216286],"genre_scores_gemma":[0.000013138978,0.9959036,0.0011654315,0.00003846052,0.00006127791,0.000328008,0.00034206267,0.00004028126,0.0021077201],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984685,0.00014973943,0.00075286475,0.00030024516,0.00011658284,0.0002120662],"domain_scores_gemma":[0.99851257,0.00043105838,0.00040237163,0.0003334211,0.00022865778,0.0000919131],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061678316,0.0004345279,0.002632591,0.0001464639,0.0001638418,0.000010475221,0.00007689356,0.00012133975,0.00002706919],"category_scores_gemma":[0.0003842298,0.00024132551,0.00033066317,0.000113879716,0.00018611341,0.000042344065,0.00016057765,0.00016402257,0.000010782367],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024527366,0.00016502418,0.000043964774,0.2036783,0.0013810198,0.000011384915,0.00038252267,5.876407e-11,0.000054768163,0.00006700205,0.0028395483,0.791352],"study_design_scores_gemma":[0.0009677386,0.00015146715,0.00001261492,0.18671311,0.004588881,0.000067125584,0.00013846702,1.0086802e-7,0.000032430755,0.00003757871,0.8070498,0.00024066868],"about_ca_topic_score_codex":0.0000036709814,"about_ca_topic_score_gemma":0.0000034174518,"teacher_disagreement_score":0.80421025,"about_ca_system_score_codex":0.00007483414,"about_ca_system_score_gemma":0.00013341215,"threshold_uncertainty_score":0.9840969},"labels":[],"label_agreement":null},{"id":"W2587812584","doi":"10.20411/pai.v2i1.162","title":"The Immunostimulatory Capacity of Nontypeable Haemophilus influenzae Lipooligosaccharide","year":2017,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Haemophilus influenzae; Microbiology; Antigen; Adjuvant; Innate immune system; Immune system; Lipopolysaccharide; Biology; Immunology; CD86; T cell","score_opus":0.08846341854035258,"score_gpt":0.34512458533056883,"score_spread":0.2566611667902162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587812584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887888,0.0046136538,0.0000057261664,0.00025251738,0.000112121874,0.000309192,0.000058560978,0.000018447905,0.005840967],"genre_scores_gemma":[0.99726135,0.0019999614,0.00018597326,0.00012272806,0.000056007095,0.000014845884,0.0000023542061,0.000014121786,0.0003426529],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988766,0.000091842085,0.00028094827,0.00014960636,0.00026373472,0.00033729084],"domain_scores_gemma":[0.99782455,0.00022817824,0.0001902301,0.0012947816,0.00036105356,0.00010120138],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00093579246,0.0001510126,0.0003329172,0.000048457794,0.002267797,0.000075309006,0.0003171002,0.00007564194,0.00001810897],"category_scores_gemma":[0.002182931,0.00009859846,0.00009983492,0.00004866713,0.00097091997,0.00013510764,0.00051006227,0.0004006415,0.000019060188],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015138127,0.00035242122,0.3357183,0.00044396272,0.0008959174,0.000053933752,0.0025391346,0.0000121389285,0.60708755,0.0019290322,0.0008942697,0.048559513],"study_design_scores_gemma":[0.0011704933,0.00023520744,0.96533495,0.00010235449,0.00007792471,0.000024950474,0.00025535614,0.00015458275,0.019584438,0.00040443262,0.012523025,0.00013227086],"about_ca_topic_score_codex":0.0018936385,"about_ca_topic_score_gemma":0.00007499377,"teacher_disagreement_score":0.6296167,"about_ca_system_score_codex":0.000038068472,"about_ca_system_score_gemma":0.00009559098,"threshold_uncertainty_score":0.9990311},"labels":[],"label_agreement":null},{"id":"W2622321284","doi":"10.20411/pai.v2i2.196","title":"Varicella Zoster Virus and Large Vessel Vasculitis, the Absence of an Association","year":2017,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"Vasculitis and related conditions","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; National Center for Research Resources","keywords":"Vasculitis; Giant cell arteritis; Medicine; Aortitis; Arteritis; Aorta; Pathology; Varicella zoster virus; Cervical Artery; Pathogenesis; Thoracic aorta; Artery; Virus; Internal medicine; Virology; Carotid arteries; Disease","score_opus":0.012616955681129785,"score_gpt":0.25928245244633735,"score_spread":0.24666549676520758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2622321284","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950016,0.0010934356,0.000041463867,0.00047859972,0.00007711982,0.00012644727,0.00011148991,0.000008987101,0.0030608163],"genre_scores_gemma":[0.9972676,0.0020511332,0.000087559725,0.00010954357,0.000039602688,0.0000049010287,0.000030100166,0.0000062324625,0.00040331658],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99944395,0.00008156396,0.00012465114,0.00009960066,0.000120768746,0.00012945644],"domain_scores_gemma":[0.99921554,0.000052916996,0.00013126362,0.00043494563,0.00010189461,0.000063444524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051347795,0.00006852431,0.00014863366,0.000022561846,0.00070594053,0.000057581754,0.00007835074,0.00009078452,0.000057135916],"category_scores_gemma":[0.00014585681,0.00004521366,0.00004804663,0.00003095232,0.000080988204,0.00010227432,0.000076300814,0.00019390305,0.0000038905123],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001677938,0.0019938084,0.4850805,0.00047060332,0.0017503963,0.00013940013,0.013923483,0.0000021222554,0.36066386,0.0101150125,0.0014570676,0.124235936],"study_design_scores_gemma":[0.00093594287,0.00010158971,0.9924309,0.000048217775,0.0001407788,0.000041667245,0.00038836873,0.00016779055,0.0007655673,0.00037025826,0.0045425887,0.000066300956],"about_ca_topic_score_codex":0.0003467091,"about_ca_topic_score_gemma":0.000051717154,"teacher_disagreement_score":0.50735044,"about_ca_system_score_codex":0.00001304624,"about_ca_system_score_gemma":0.000021154436,"threshold_uncertainty_score":0.5429595},"labels":[],"label_agreement":null},{"id":"W2912937798","doi":"10.20411/pai.v4i1.270","title":"The Microbiome of Temporal Arteries","year":2019,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"Vasculitis and related conditions","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; Arthritis Society; Union Chimique Belge; Canadian Rheumatology Association; Cleveland Clinic; National Institutes of Health; Ambrose Monell Foundation","keywords":"Microbiome; Temporal artery; Biology; Medicine; Pathology; Bioinformatics; Disease","score_opus":0.007369982946553621,"score_gpt":0.22128953067891027,"score_spread":0.21391954773235666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2912937798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953825,0.0013543686,0.0000056373697,0.00038003657,0.0000844209,0.000110343295,0.000030271844,0.000008081496,0.0026443421],"genre_scores_gemma":[0.99818575,0.00042209882,0.00008134607,0.00003718859,0.000010184642,0.0000021173462,0.000028409779,0.000004083738,0.0012288019],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997075,0.000025783684,0.000103045975,0.00004834957,0.000038728358,0.00007658278],"domain_scores_gemma":[0.9996773,0.000025539963,0.000031736658,0.00019792971,0.00004163265,0.000025868387],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000103519735,0.00004343392,0.000101740254,0.000018940405,0.000119893135,0.000008011142,0.000029742057,0.0000358349,0.00009078594],"category_scores_gemma":[0.000009946256,0.000024894687,0.000052590935,0.000056560453,0.0000995996,0.000018917188,0.0000254837,0.000094611976,0.000020443618],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057148216,0.00011422646,0.066254884,0.00008670385,0.0001629297,0.0000071631403,0.00082832796,2.5398867e-7,0.9183529,0.0018651367,0.0004738244,0.011796527],"study_design_scores_gemma":[0.0016569513,0.0005365567,0.91241306,0.00014132865,0.00013035428,0.00025116064,0.0024403087,0.000041492003,0.010506354,0.00059649383,0.07114876,0.00013719342],"about_ca_topic_score_codex":0.000031667463,"about_ca_topic_score_gemma":0.0000035752228,"teacher_disagreement_score":0.9078465,"about_ca_system_score_codex":0.0000039069932,"about_ca_system_score_gemma":0.00001871895,"threshold_uncertainty_score":0.10151759},"labels":[],"label_agreement":null},{"id":"W2922048152","doi":"10.20411/pai.v4i1.269","title":"Microbiomes of Inflammatory Thoracic Aortic Aneurysms Due to Giant Cell Arteritis and Clinically Isolated Aortitis Differ From Those of Non-Inflammatory Aneurysms","year":2019,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"Infectious Aortic and Vascular Conditions","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; National Institutes of Health; Cleveland Clinic","keywords":"Aortitis; Aorta; Giant cell arteritis; Arteritis; Microbiome; Thoracic aorta; Medicine; Thoracic aortic aneurysm; Aortic aneurysm; Internal medicine; Aneurysm; Biology; Pathology; Cardiology; Vasculitis; Surgery; Bioinformatics; Disease","score_opus":0.006912960148086957,"score_gpt":0.2500025127381455,"score_spread":0.24308955259005854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2922048152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976275,0.0004234569,0.00045286847,0.000038109698,0.00016060057,0.0006567569,0.00031144818,0.000032202308,0.00029707194],"genre_scores_gemma":[0.9984545,0.0004112535,0.00064953614,0.00015431439,0.000034784403,0.000016078724,0.00010576012,0.000034642246,0.00013909156],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983194,0.00015613553,0.00078081904,0.000316292,0.00015765874,0.00026971774],"domain_scores_gemma":[0.99857384,0.00014075967,0.00025884726,0.0006236092,0.00019857303,0.0002043817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032518088,0.00023734868,0.00069973985,0.00017130237,0.00010403376,0.00001922672,0.00009171907,0.00018385508,0.00022680013],"category_scores_gemma":[0.00006566004,0.00021576963,0.00017601265,0.00017208261,0.00019980539,0.00008595277,0.0001460804,0.00028434844,0.000028657954],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001706707,0.00021672128,0.16291194,0.00039978066,0.000097847515,0.00009187781,0.00085755164,8.482956e-7,0.83145124,0.000005781594,0.000029315746,0.0037664117],"study_design_scores_gemma":[0.0013164844,0.0011223345,0.95401984,0.00032842348,0.00031510348,0.00025948594,0.00035723034,0.00037015398,0.041504078,0.000050499413,0.00009817589,0.00025817417],"about_ca_topic_score_codex":0.00019224649,"about_ca_topic_score_gemma":0.000019421455,"teacher_disagreement_score":0.7911079,"about_ca_system_score_codex":0.000017201533,"about_ca_system_score_gemma":0.000088448585,"threshold_uncertainty_score":0.87988305},"labels":[],"label_agreement":null},{"id":"W3084467698","doi":"10.20411/pai.v5i1.348","title":"Pharmacological Inhibition of PPAR&lt;sub&gt;y&lt;/sub&gt; Boosts HIV Reactivation and Th17 Effector Functions, while Preventing Progeny Virion Release and &lt;i&gt;de novo&lt;/i&gt; Infection","year":2020,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal Clinical Research Institute; Caprion (Canada); Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Provirus; Tetherin; Biology; Downregulation and upregulation; C-C chemokine receptor type 6; RAR-related orphan receptor gamma; Effector; Viral replication; Transcriptional regulation; Transcription factor; Virology; Cell biology; Cancer research; Molecular biology; Receptor; Chemokine receptor; Virus; Chemokine; Gene; Genetics","score_opus":0.0184301930519848,"score_gpt":0.24754549298461634,"score_spread":0.22911529993263155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3084467698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925971,0.0049346113,0.00028678213,0.00025988198,0.00011041517,0.0010122121,0.0004364683,0.000095928255,0.00026659816],"genre_scores_gemma":[0.9947707,0.0036845596,0.00008100397,0.00006577442,0.00006685432,0.00015208122,0.0010711673,0.000024455341,0.00008340853],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975511,0.0010038014,0.0004200963,0.00046787024,0.00010241209,0.00045471918],"domain_scores_gemma":[0.998936,0.00031220526,0.00024429001,0.00020531462,0.00014987642,0.00015233786],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006924792,0.0003074701,0.00041185788,0.00014812696,0.00070305343,0.00004683285,0.00006560756,0.00031610174,0.00010746098],"category_scores_gemma":[0.00042271925,0.00027190804,0.000104976476,0.00026060297,0.00030180003,0.0002811159,0.00021748756,0.00045504502,0.00008167444],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008209449,0.000547098,0.010217086,0.00016932773,0.00026350492,0.000018130526,0.00045136042,0.0000032131804,0.966327,0.00005430811,0.000797321,0.020330686],"study_design_scores_gemma":[0.00482795,0.002110261,0.30843607,0.00016294648,0.00040874098,0.00020686968,0.000070456525,0.00017880769,0.668522,0.00006407315,0.01460045,0.00041141076],"about_ca_topic_score_codex":0.000028235127,"about_ca_topic_score_gemma":0.000043234,"teacher_disagreement_score":0.29821897,"about_ca_system_score_codex":0.0000927328,"about_ca_system_score_gemma":0.000087704364,"threshold_uncertainty_score":0.9999733},"labels":[],"label_agreement":null},{"id":"W3126012492","doi":"10.20411/pai.v6i1.384","title":"Plasma Extracellular Vesicle Subtypes May be Useful as Potential Biomarkers of Immune Activation in People With HIV","year":2021,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Université du Québec à Montréal; Centre Hospitalier de l’Université de Montréal; Université Laval; Université de Montréal; McGill University Health Centre; Centre hospitalier de l'Université Laval","funders":"McGill University; Canadian Institutes of Health Research; Université Laval; Université de Montréal; Pfizer","keywords":"Immune system; Immune dysregulation; microRNA; CD8; Extracellular vesicle; Inflammation; Extracellular vesicles; Flow cytometry; Immunology; Biology; Microvesicles; Cell biology; Gene; Genetics","score_opus":0.006757159657990781,"score_gpt":0.21648677876581085,"score_spread":0.20972961910782006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3126012492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99659896,0.0023075656,0.00045290665,0.00011146113,0.000033987544,0.00012642688,0.000040561827,0.0000068233826,0.00032133094],"genre_scores_gemma":[0.99816334,0.00025769946,0.00085776264,0.000024439334,0.000021374814,0.000009070175,0.0003464624,0.00002272864,0.00029713404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899316,0.00017749578,0.0002448283,0.00026536622,0.00012515092,0.00019398001],"domain_scores_gemma":[0.999254,0.000019129971,0.00011287807,0.00044420687,0.00010285958,0.00006691112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023360277,0.00014664458,0.0001713315,0.00004729626,0.00008391318,0.000021169195,0.00011781178,0.00011586067,0.00005286088],"category_scores_gemma":[0.00010495348,0.00014560734,0.0000702578,0.00017885525,0.00011416569,0.000011943731,0.00013897399,0.00010813588,0.0000021655035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003402369,0.00024268459,0.030842096,0.0000459717,0.000068367866,0.000025293632,0.000120398225,0.000042527103,0.9673286,0.000054590233,0.000017961465,0.0008712928],"study_design_scores_gemma":[0.0009049846,0.00013532875,0.1520926,0.000029239927,0.00003520259,0.00003811948,0.0009330974,0.00015515224,0.84501237,0.00003072547,0.00046177176,0.00017138306],"about_ca_topic_score_codex":0.00012398454,"about_ca_topic_score_gemma":0.00007284613,"teacher_disagreement_score":0.1223162,"about_ca_system_score_codex":0.000014504026,"about_ca_system_score_gemma":0.0001282568,"threshold_uncertainty_score":0.5937695},"labels":[],"label_agreement":null},{"id":"W3165903161","doi":"10.20411/pai.v6i1.441","title":"Antibody Responses to SARS-CoV-2 mRNA Vaccines Are Detectable in Saliva","year":2021,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; Weill Cornell Medical College; National Institutes of Health; Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Saliva; Antibody; Immunology; Immune system; Medicine; Virology; Immunoglobulin G; Transmission (telecommunications); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Biology; Disease; Infectious disease (medical specialty); Internal medicine","score_opus":0.05376335664236151,"score_gpt":0.36796162637083346,"score_spread":0.314198269728472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3165903161","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950283,0.0026684308,0.00005717426,0.00045188755,0.000077366094,0.00027329283,0.000041169264,0.000046009118,0.0013563519],"genre_scores_gemma":[0.98675305,0.00010400293,0.0003450634,0.012569553,0.00007003097,0.000023753622,0.000012858017,0.000028670098,0.0000930335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983865,0.00029559672,0.0002824186,0.00034169212,0.00024775183,0.00044605226],"domain_scores_gemma":[0.9988064,0.00021947813,0.000044912464,0.00062460714,0.00025166737,0.000052916497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060378277,0.00019154522,0.0004242246,0.0002736507,0.00017015832,0.00006511424,0.00013686958,0.00011544917,0.000017595085],"category_scores_gemma":[0.001266127,0.00017239015,0.00008548506,0.0007995377,0.0000425789,0.00008605551,0.0002781306,0.00038388371,0.00005366095],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044511355,0.00015999297,0.29141757,0.00008190922,0.000020873244,0.00047824706,0.0003218483,5.42059e-8,0.7045985,0.000006459261,0.00006731651,0.0024021082],"study_design_scores_gemma":[0.00089315535,0.00018257936,0.397035,0.00014483617,0.000021593576,0.00015281518,0.00080935186,0.00004052867,0.5788083,0.000057018784,0.021704005,0.00015083015],"about_ca_topic_score_codex":0.0009486318,"about_ca_topic_score_gemma":0.0006940216,"teacher_disagreement_score":0.12579022,"about_ca_system_score_codex":0.00006565547,"about_ca_system_score_gemma":0.0002484456,"threshold_uncertainty_score":0.70298666},"labels":[],"label_agreement":null},{"id":"W3209999883","doi":"10.20411/pai.v6i2.405","title":"Impaired Memory B-Cell Response to Influenza Immunization in Patients With Common Variable Immunodeficiency (CVID)","year":2021,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Nova Scotia Health Authority; Dalhousie University; University of Toronto","funders":"Arts and Humanities Research Council; Canadian Institutes of Health Research; Ontario HIV Treatment Network","keywords":"Common variable immunodeficiency; Immunology; Vaccination; Medicine; Memory B cell; Serology; CD19; Immunization; Antigen; Influenza vaccine; Hemagglutination assay; Antibody; ELISPOT; B cell; CD8; Titer","score_opus":0.00613160194732909,"score_gpt":0.2052495390391331,"score_spread":0.199117937091804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209999883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98349464,0.0142047675,0.00012995374,0.000058054204,0.0002553053,0.00042773664,0.000088218156,0.00007042339,0.0012708874],"genre_scores_gemma":[0.99828357,0.00007873593,0.00017390995,0.00045586022,0.0000012551601,0.000034640347,0.00034161753,0.000037795002,0.0005926404],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9971643,0.0010964036,0.00056875125,0.00043833596,0.00009719383,0.00063499855],"domain_scores_gemma":[0.99839664,0.00022298713,0.00015560379,0.0009250877,0.00027778622,0.000021926808],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010037251,0.00034277973,0.00048799734,0.00025893314,0.00067709363,0.00006233295,0.00034770233,0.00024822852,0.00023729744],"category_scores_gemma":[0.00027327167,0.00031778257,0.00006849296,0.0010380748,0.00019561431,0.0002453079,0.00036707544,0.0005538214,0.00010067062],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0040021464,0.0024228434,0.057528045,0.0000579998,0.0000746365,0.000012657071,0.005348864,0.00044840472,0.9188873,0.00014163078,0.00002958739,0.011045888],"study_design_scores_gemma":[0.0071546463,0.00079859304,0.9458682,0.00014574101,0.000058062895,0.000022354447,0.003949221,0.000019920568,0.03392302,0.00006684457,0.007325746,0.0006676326],"about_ca_topic_score_codex":0.00056697417,"about_ca_topic_score_gemma":0.000016800195,"teacher_disagreement_score":0.8883402,"about_ca_system_score_codex":0.000083172315,"about_ca_system_score_gemma":0.0002286973,"threshold_uncertainty_score":0.9999274},"labels":[],"label_agreement":null},{"id":"W4306760397","doi":"10.20411/pai.v7i2.516","title":"Therapeutic Bacteriophages for Gram-Negative Bacterial Infections in Animals and Humans","year":2022,"lang":"en","type":"review","venue":"Pathogens and Immunity","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Sick Kids Foundation","keywords":"Acinetobacter baumannii; Pseudomonas aeruginosa; Antibiotics; Microbiology; Phage therapy; Antimicrobial; Antibiotic resistance; Drug resistance; Biology; Bacteria; Salmonella; Klebsiella pneumoniae; Acinetobacter; Multiple drug resistance; Gram-negative bacteria; Escherichia coli; Virology; Bacteriophage","score_opus":0.05047011696469213,"score_gpt":0.3166053185533598,"score_spread":0.2661352015886677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4306760397","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.079942584,0.9145632,0.000029825564,0.000022386532,0.0006351479,0.0020616546,0.0016705033,0.00004652101,0.0010281956],"genre_scores_gemma":[0.004190452,0.9947457,0.00016549326,0.000026757289,0.000049346185,0.00041444015,0.0001664314,0.000039809256,0.0002016098],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99859935,0.00031756068,0.00038269977,0.00037158406,0.000056279638,0.0002725438],"domain_scores_gemma":[0.9991536,0.00033490828,0.00019427782,0.00024514107,0.0000058318074,0.000066255234],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00029562565,0.00031799581,0.0007048857,0.00009669645,0.0005574996,0.00011294599,0.00014998336,0.00013733671,0.0040864274],"category_scores_gemma":[0.00004909399,0.00028366136,0.00019107694,0.00020270105,0.00017398092,0.00015514519,0.00038594715,0.00042651765,0.000014661237],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018572366,0.00019142698,0.000073120435,0.0007677103,0.000074785195,0.000004202829,0.00063955545,2.3697939e-7,0.0099197915,0.000028975639,0.000044880377,0.9882367],"study_design_scores_gemma":[0.00024421522,0.00023503265,0.0072365412,0.0002477528,0.00022100075,0.00007520862,0.00014736845,0.0000020042708,0.000009353472,0.000075338154,0.99119467,0.00031151582],"about_ca_topic_score_codex":0.00080529874,"about_ca_topic_score_gemma":0.0006697232,"teacher_disagreement_score":0.9911498,"about_ca_system_score_codex":0.00016376065,"about_ca_system_score_gemma":0.000024322402,"threshold_uncertainty_score":0.99996156},"labels":[],"label_agreement":null},{"id":"W4388795885","doi":"10.20411/pai.v8i1.613","title":"Dynamics of T-cell Responses Following COVID-19 mRNA Vaccination and Breakthrough Infection in Older Adults","year":2023,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; St. Paul's Hospital; AIDS Vancouver; Simon Fraser University","funders":"Canadian Institutes of Health Research; Providence Health Care; Simon Fraser University; Michael Smith Health Research BC; Public Health Agency; Public Health Agency of Canada","keywords":"CD8; Vaccination; Medicine; Immunology; Young adult; Population; T cell; Immune system; Internal medicine","score_opus":0.02971944997648179,"score_gpt":0.3432199377155015,"score_spread":0.31350048773901973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388795885","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844724,0.00035764195,0.00012445558,0.00022510803,0.000054572432,0.00032858006,0.000023635639,0.000045484914,0.00039328425],"genre_scores_gemma":[0.99856555,0.00026731283,0.000050099494,0.0010111355,0.000014069819,0.000019435081,0.000026457174,0.0000134427955,0.000032501262],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990634,0.00018021002,0.0002146454,0.00017986158,0.00017450203,0.00018738024],"domain_scores_gemma":[0.9993279,0.0003058093,0.000053549455,0.00020318091,0.00006758576,0.00004197741],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008375842,0.00010281646,0.00021252816,0.0003497603,0.00012568934,0.00001625033,0.000040522526,0.00010039965,0.000005451322],"category_scores_gemma":[0.0007235202,0.00009667504,0.00005592446,0.00060766574,0.000036331323,0.000095353505,0.00009690308,0.00020523235,0.000003529929],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069942675,0.00021206056,0.88727355,0.0006310747,0.000023133365,0.00007256034,0.002594286,9.282788e-7,0.09484364,0.000040189745,0.000021539008,0.013587627],"study_design_scores_gemma":[0.0031690693,0.00025848567,0.9796254,0.0001080477,0.000032349468,0.000027654705,0.0012009394,0.003563649,0.011325364,0.00020801736,0.00037302554,0.000107987784],"about_ca_topic_score_codex":0.0032946116,"about_ca_topic_score_gemma":0.0008904952,"teacher_disagreement_score":0.092351876,"about_ca_system_score_codex":0.000110793815,"about_ca_system_score_gemma":0.00013858282,"threshold_uncertainty_score":0.49804893},"labels":[],"label_agreement":null},{"id":"W4394932824","doi":"10.20411/pai.v9i1.659","title":"Invasive and Non-invasive Clinical Haemophilus influenzae Type A Isolates Activate Differentiated HL-60 Cells In Vitro","year":2024,"lang":"en","type":"article","venue":"Pathogens and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Immunization Research Network","keywords":"Haemophilus influenzae; In vitro; Microbiology; Haemophilus; Biology; Virology; Medicine; Bacteria; Antibiotics; Genetics","score_opus":0.025106512419596005,"score_gpt":0.2781902834856487,"score_spread":0.25308377106605273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394932824","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99472916,0.003407249,0.0000072746884,0.000063296924,0.0012908513,0.00022170474,0.00013225559,0.000058630223,0.000089589375],"genre_scores_gemma":[0.9956269,0.003914912,0.00002409024,0.00006648724,0.000049582894,0.000012837117,0.00011063075,0.000020205196,0.00017433132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868816,0.00032129764,0.00037924264,0.00032037197,0.000010439718,0.00028050088],"domain_scores_gemma":[0.99908495,0.0005055294,0.00006814182,0.0002297275,0.00007177298,0.000039901843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002744585,0.0002222425,0.00039805952,0.00016485217,0.00021760058,0.00007436629,0.00008989438,0.0003255214,0.00013230386],"category_scores_gemma":[0.00015096874,0.00018083196,0.000079327416,0.00023938486,0.0001647319,0.00014683488,0.00021484577,0.00058243424,0.00008776741],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029369822,0.00012637477,0.011326667,0.000065735985,0.00016889886,0.000011614401,0.00052971835,4.133873e-7,0.98361623,0.00001458726,0.00010209346,0.003743965],"study_design_scores_gemma":[0.0016877926,0.00055178977,0.3518374,0.00021943678,0.00014076846,0.00011596468,0.00038682515,0.00005458179,0.6400107,0.00027912122,0.004301978,0.0004136318],"about_ca_topic_score_codex":0.0007531371,"about_ca_topic_score_gemma":0.00023143142,"teacher_disagreement_score":0.34360552,"about_ca_system_score_codex":0.000018463126,"about_ca_system_score_gemma":0.00008171957,"threshold_uncertainty_score":0.7374114},"labels":[],"label_agreement":null}]}