{"meta":{"query_hash":"410679c8a305","filters":{"venue":"Systematic Biology"},"cohort_total":169,"direct_labels_cover":0,"predictions_cover":169,"exported":169,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/410679c8a305","api":"https://metacan.xera.ac/api/v1/cohort?venue=Systematic+Biology"},"results":[{"id":"W1971962237","doi":"10.1093/sysbio/syr090","title":"Branch Lengths on Birth–Death Trees and the Expected Loss of Phylogenetic Diversity","year":2011,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Coalescent theory; Phylogenetic tree; Biology; Tree of life (biology); Tree (set theory); Evolutionary biology; Redundancy (engineering); Mathematics; Combinatorics; Computer science; Genetics","score_opus":0.040919295616068725,"score_gpt":0.21834037448951782,"score_spread":0.1774210788734491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971962237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98843485,0.0041619707,0.00007045804,0.00008550323,0.00017797924,0.00031555962,0.000020547204,0.00001594468,0.006717208],"genre_scores_gemma":[0.99972713,0.00008301464,0.00005184097,0.000080419646,0.000013897083,0.0000029659254,0.0000022856589,7.3315584e-7,0.000037699137],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989215,0.0005258343,0.00022048524,0.0001418487,0.000055967055,0.00013437179],"domain_scores_gemma":[0.99916625,0.0004746286,0.00013794351,0.0001634897,0.000029102197,0.000028596764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034989504,0.00009123924,0.00036522807,0.000045467084,0.00018689211,0.0000024577657,0.00015750997,0.00007121409,0.00016789655],"category_scores_gemma":[0.000107168955,0.00004608084,0.0000450838,0.000060819853,0.0005450372,0.000012941391,0.00003494246,0.00005815435,0.00003136959],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007896964,0.000008525078,0.99227613,0.0005973742,0.000081868,0.0000011094394,0.0033406592,0.000002247375,0.000004293973,0.003539042,0.000005335576,0.00006445282],"study_design_scores_gemma":[0.000521252,0.00015871455,0.9942097,0.00011546032,0.000038792346,0.000013080117,0.00082084205,0.00016164724,0.000015369895,0.0038845253,0.0000022098463,0.00005842489],"about_ca_topic_score_codex":0.0013113071,"about_ca_topic_score_gemma":0.007679542,"teacher_disagreement_score":0.011292314,"about_ca_system_score_codex":0.0000010442253,"about_ca_system_score_gemma":0.000006591637,"threshold_uncertainty_score":0.42853647},"labels":[],"label_agreement":null},{"id":"W1976013645","doi":"10.1080/10635150290102591","title":"Signatures of Random and Selective Mass Extinctions in Phylogenetic Tree Balance","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of New Brunswick","funders":"","keywords":"Extinction event; Extinction (optical mineralogy); Biology; Genetic algorithm; Phylogenetic tree; Clade; Lineage (genetic); Ecology; Evolutionary biology; Paleontology; Gene; Genetics; Biological dispersal; Population","score_opus":0.015745614395564822,"score_gpt":0.2149166262696585,"score_spread":0.19917101187409367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976013645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9555791,0.025182193,0.00043743124,0.00019959615,0.0002193113,0.0005348754,0.00002096405,0.000019051358,0.017807472],"genre_scores_gemma":[0.99951714,0.0001257076,0.00025791867,0.000033476423,0.000013291105,0.000008043165,0.000002466601,7.400798e-7,0.00004122246],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990745,0.0003555557,0.00025822266,0.00013903681,0.000036184556,0.00013645615],"domain_scores_gemma":[0.9993037,0.00047147804,0.000102801016,0.000074316406,0.000024203971,0.000023502442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021359623,0.000076688135,0.00035201124,0.00007956855,0.000047651043,0.0000028708898,0.00006314286,0.00008990424,0.00023720917],"category_scores_gemma":[0.00014233311,0.000053018946,0.000025336161,0.00012293879,0.000160551,0.000015983462,0.000004284885,0.00007639597,0.000017049497],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012761354,0.000007238129,0.99808794,0.00080320134,0.000034487046,0.0000014840401,0.0004218218,0.00010116605,0.0002309046,0.00013253176,0.00001901891,0.00014746016],"study_design_scores_gemma":[0.0006906606,0.00012791985,0.98052245,0.0001614096,0.000022367849,0.000018025967,0.00037698835,0.0163419,0.000028499704,0.0016264883,0.000004117995,0.00007917935],"about_ca_topic_score_codex":0.00011677023,"about_ca_topic_score_gemma":0.009891309,"teacher_disagreement_score":0.04393803,"about_ca_system_score_codex":0.0000018385867,"about_ca_system_score_gemma":0.0000042696865,"threshold_uncertainty_score":0.55195826},"labels":[],"label_agreement":null},{"id":"W1980715304","doi":"10.1080/10635150600755396","title":"The Phylogeny of Early Eureptiles: Comparing Parsimony and Bayesian Approaches in the Investigation of a Basal Fossil Clade","year":2006,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Autapomorphy; Biology; Paraphyly; Phylogenetic tree; Maximum parsimony; Taxon; Clade; Evolutionary biology; Bayesian probability; Character evolution; Context (archaeology); Sister group; Phylogenetics; Ecology; Paleontology; Statistics; Mathematics; Genetics","score_opus":0.05343547033889319,"score_gpt":0.22446859426801719,"score_spread":0.171033123929124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980715304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98894656,0.0085061155,0.0001454433,0.00021339468,0.000052604384,0.00031215628,0.0000052737487,0.000004282426,0.0018141762],"genre_scores_gemma":[0.9998034,0.000015031209,0.00013142133,0.00001784477,0.000016465723,0.000007026435,0.0000036408721,6.607853e-7,0.0000044644194],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986135,0.0006963787,0.00040023788,0.00010310697,0.000062993575,0.00012383086],"domain_scores_gemma":[0.99889934,0.00071265205,0.00022822132,0.00013075065,0.00001673869,0.000012303369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075243117,0.00007076801,0.0002752548,0.00003858149,0.00009781187,0.000008497818,0.00014949848,0.00006306067,0.0000021819326],"category_scores_gemma":[0.000062557396,0.00003409521,0.00002754096,0.000106405954,0.0005427927,0.000020734433,0.000008704509,0.000071458744,0.0000013666196],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000075334547,0.0000035019445,0.994503,0.0011031075,0.000016860044,2.4900717e-7,0.0015381328,0.00005850453,0.000046260906,0.0026778728,0.000011156571,0.000033780874],"study_design_scores_gemma":[0.00010852264,0.000057200406,0.9867987,0.00018873472,0.000015296106,0.0000042274137,0.002183244,0.0056087566,0.000013780795,0.004984387,0.0000014710365,0.00003565235],"about_ca_topic_score_codex":0.0014571374,"about_ca_topic_score_gemma":0.038681403,"teacher_disagreement_score":0.037224267,"about_ca_system_score_codex":0.0000011482587,"about_ca_system_score_gemma":0.000013565825,"threshold_uncertainty_score":0.97886014},"labels":[],"label_agreement":null},{"id":"W2012828844","doi":"10.1080/10635150500354647","title":"Under-parameterized Model of Sequence Evolution Leads to Bias in the Estimation of Diversification Rates from Molecular Phylogenies","year":2005,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Parameterized complexity; Diversification (marketing strategy); Evolutionary biology; Sequence (biology); Estimation; Molecular evolution; Econometrics; Computational biology; Phylogenetics; Genetics; Mathematics; Algorithm; Gene; Economics","score_opus":0.061180568753621205,"score_gpt":0.2961091233108821,"score_spread":0.23492855455726092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012828844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9349664,0.0008869516,0.06337327,0.00018543047,0.000028943503,0.00048704335,0.00004795218,0.0000014266682,0.000022574513],"genre_scores_gemma":[0.991797,0.000019798801,0.007978973,0.00008019331,0.000012903878,0.00006769921,0.00003585814,0.000004971471,0.0000026496798],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989715,0.00024421827,0.00041489437,0.00019278335,0.00006679661,0.0001097562],"domain_scores_gemma":[0.9992918,0.000068046254,0.00022745978,0.00032029662,0.00007725642,0.000015157537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037078775,0.00010377477,0.00027172462,0.000056100365,0.00002409166,0.0000044808544,0.0002196316,0.00009865892,8.341806e-7],"category_scores_gemma":[0.00017525577,0.00007531998,0.00006180142,0.00008764214,0.0000908971,0.0000010676989,0.00007201836,0.000030470705,0.0000022366542],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023313516,0.000025413396,0.0021695385,0.0002944891,0.00003786983,4.4455234e-8,0.00042686609,0.07795668,0.9175765,0.0014396647,0.000002049068,0.000047559264],"study_design_scores_gemma":[0.0006963353,0.00044291155,0.012592407,0.00038366203,0.00012346343,0.0000036438853,0.001353141,0.119035654,0.8532556,0.011843226,0.0000017718463,0.00026813237],"about_ca_topic_score_codex":0.000092592694,"about_ca_topic_score_gemma":0.00004273088,"teacher_disagreement_score":0.06432086,"about_ca_system_score_codex":0.00001864867,"about_ca_system_score_gemma":0.000033561468,"threshold_uncertainty_score":0.30714595},"labels":[],"label_agreement":null},{"id":"W2020965066","doi":"10.1080/10635150050207384","title":"Urochordates Are Monophyletic Within the Deuterostomes","year":2000,"lang":"en","type":"review","venue":"Systematic Biology","topic":"Marine Ecology and Invasive Species","field":"Environmental Science","cited_by":247,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Vanderbilt University; National Science Foundation","keywords":"Biology; Monophyly; Paraphyly; Clade; Phylogenetic tree; Deuterostome; Phylogenetics; Evolutionary biology; Zoology; Anatomy; Genetics; Gene","score_opus":0.03018051457658268,"score_gpt":0.27629756501040686,"score_spread":0.24611705043382417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020965066","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020076396,0.9906493,0.000010904599,0.000080396756,0.00051266316,0.0018373324,0.000016124493,0.00004670442,0.0066458555],"genre_scores_gemma":[0.0012842019,0.9954045,0.00007317889,0.0002584801,0.000094499715,0.00081873714,0.000026895364,0.000028180026,0.0020113455],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.99699754,0.0012271871,0.000895356,0.00046872057,0.00009774645,0.00031345728],"domain_scores_gemma":[0.9977317,0.0006242592,0.0008053491,0.0007779993,0.0000058531627,0.000054864053],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00059656095,0.00040340063,0.0018653518,0.000054581917,0.00020183179,0.000034590066,0.000956905,0.0004132772,0.003668561],"category_scores_gemma":[0.00022589554,0.00019463494,0.00031714814,0.00020802279,0.00060423074,0.000037277397,0.00047105923,0.0003940459,0.005998856],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014048706,0.00026839715,0.013268866,0.87203145,0.0017918948,0.00011245122,0.0011391941,0.00004996267,0.0000044005765,0.009136684,0.011390124,0.09079253],"study_design_scores_gemma":[0.00015369311,0.00019475789,0.0006957828,0.04108458,0.0015473611,0.0005277127,0.00019863222,0.000034906607,0.0000015355297,0.004738766,0.9498419,0.0009803452],"about_ca_topic_score_codex":0.000034415072,"about_ca_topic_score_gemma":0.000081853665,"teacher_disagreement_score":0.9384518,"about_ca_system_score_codex":0.00010504501,"about_ca_system_score_gemma":0.00002499824,"threshold_uncertainty_score":0.9972422},"labels":[],"label_agreement":null},{"id":"W2029973096","doi":"10.1093/sysbio/syq026","title":"Sampling Trees from Evolutionary Models","year":2010,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Sampling (signal processing); Evolutionary biology; Statistics; Mathematics; Computer science","score_opus":0.04499943115142276,"score_gpt":0.25705831828394005,"score_spread":0.21205888713251728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029973096","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97355783,0.004702205,0.00586456,0.00039349514,0.0017829951,0.00032395186,0.00012845754,0.00011137012,0.013135116],"genre_scores_gemma":[0.9944063,0.000012498312,0.005184038,0.00013982829,0.0001327609,0.0000062714757,0.000072100425,0.0000013814279,0.000044844728],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99904215,0.00017134509,0.0002993295,0.00021487726,0.000063681044,0.0002086141],"domain_scores_gemma":[0.9990396,0.00053852587,0.00010557145,0.00021765522,0.000037910104,0.000060752773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024591413,0.00011036188,0.00031713868,0.000053798314,0.00016912409,0.000011023762,0.00018350295,0.00016137204,0.00074442883],"category_scores_gemma":[0.00013000303,0.00007579638,0.000057659287,0.000062602354,0.00017453998,0.0000671442,0.000014172596,0.00017442094,0.00035680685],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008258677,0.00000821781,0.9909975,0.0003658857,0.0000746475,0.0000015877655,0.00033714127,0.00039210723,0.0002670733,0.0072757537,0.00008772295,0.00018408436],"study_design_scores_gemma":[0.00017692901,0.000040383475,0.85766304,0.00016739883,0.000038816015,0.000024048886,0.00046750793,0.05265779,0.000004756867,0.08852708,0.00006306986,0.00016920968],"about_ca_topic_score_codex":0.0017258972,"about_ca_topic_score_gemma":0.053145584,"teacher_disagreement_score":0.13333452,"about_ca_system_score_codex":0.0000016554122,"about_ca_system_score_gemma":0.000023145227,"threshold_uncertainty_score":0.9641321},"labels":[],"label_agreement":null},{"id":"W2033804168","doi":"10.1080/10635150290102528","title":"Using Tree Shape","year":2002,"lang":"en","type":"review","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick; Simon Fraser University","funders":"","keywords":"Phylogenetic tree; Taxon; Tree (set theory); Clade; Biology; Evolutionary biology; Diversification (marketing strategy); Tree of life (biology); Variation (astronomy); Genealogy; Phylogenetics; Ecology; History; Mathematics; Combinatorics","score_opus":0.2518222798966471,"score_gpt":0.3547255151219416,"score_spread":0.10290323522529449,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033804168","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00000877148,0.98687994,0.00006197277,0.000008256479,0.0008535768,0.0007942885,0.000059548038,0.000050914834,0.011282702],"genre_scores_gemma":[0.00041384946,0.9987725,0.00041434664,0.00003488547,0.00013496612,0.000010536874,0.0000595025,0.0000041658286,0.00015521958],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974519,0.0010144905,0.0008003008,0.00033508934,0.000071420494,0.0003268061],"domain_scores_gemma":[0.99853796,0.0005674947,0.00050323486,0.00029793408,0.000025614361,0.0000677585],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00038341788,0.0003200333,0.002436973,0.00016319667,0.00014358506,0.00001662605,0.00031420705,0.00046686814,0.0015207267],"category_scores_gemma":[0.00013695272,0.00019072542,0.00032908624,0.00018255094,0.00016584391,0.000024064424,0.000020279342,0.00022415812,0.0015677159],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[9.938249e-7,0.000011539399,0.009199443,0.6562436,0.0006923053,0.000023395502,0.00011605943,0.0000027049082,1.3899217e-8,0.00043953178,0.00017522147,0.3330952],"study_design_scores_gemma":[0.00045469616,0.00035097674,0.0013276425,0.29000705,0.006761067,0.0024144226,0.00036795842,0.021244777,1.4369695e-8,0.0011195446,0.67354864,0.0024032313],"about_ca_topic_score_codex":0.00011378603,"about_ca_topic_score_gemma":0.0023328413,"teacher_disagreement_score":0.6733734,"about_ca_system_score_codex":0.000008358419,"about_ca_system_score_gemma":0.000045627545,"threshold_uncertainty_score":0.99939203},"labels":[],"label_agreement":null},{"id":"W2046115859","doi":"10.1080/10635150600981596","title":"Are the Linnean and Phylogenetic Nomenclatural Systems Combinable? Recommendations for Biological Nomenclature","year":2006,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant Taxonomy and Phylogenetics","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Monophyly; Biology; Nomenclature; Phylogenetic tree; Phylogenetic nomenclature; Taxon; Clade; PhyloCode; Evolutionary biology; Zoology; Genus; Taxonomic rank; Type (biology); Taxonomy (biology); Genealogy; Ecology; Genetics","score_opus":0.04806661495535577,"score_gpt":0.23095916782266188,"score_spread":0.1828925528673061,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046115859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900914,0.0040272176,0.0001565248,0.0028034574,0.0005205086,0.0018754086,0.0003439826,0.00005087345,0.0001306607],"genre_scores_gemma":[0.99840313,0.000033000753,0.0002158312,0.00023321081,0.00039031624,0.00043545585,0.00020307464,0.00000113901,0.00008481369],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99846506,0.0003666324,0.00045760666,0.00031576425,0.00005250933,0.00034244725],"domain_scores_gemma":[0.9983229,0.0010418777,0.00039970843,0.00010542297,0.00007573614,0.000054372722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049015245,0.00019988799,0.00043113367,0.000014804254,0.00042056592,0.00008675915,0.00029502023,0.00025005263,0.0000129568725],"category_scores_gemma":[0.00007420786,0.00006042431,0.00008431012,0.00014746869,0.00014774207,0.000020684472,0.00009107766,0.0001328441,0.000007701843],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017378054,0.00061802694,0.515593,0.008989418,0.00047354563,0.000008911561,0.00032509436,0.00013054528,0.22353052,0.24005798,0.007633128,0.002466078],"study_design_scores_gemma":[0.0026799082,0.003474441,0.73954105,0.004108637,0.00058324134,0.0007806419,0.0095009655,0.008802615,0.0012530716,0.14919052,0.07688386,0.0032010584],"about_ca_topic_score_codex":0.00007994071,"about_ca_topic_score_gemma":0.00013537062,"teacher_disagreement_score":0.22394806,"about_ca_system_score_codex":0.000018014334,"about_ca_system_score_gemma":0.000004965516,"threshold_uncertainty_score":0.32346955},"labels":[],"label_agreement":null},{"id":"W2047955375","doi":"10.1080/10635150290102447","title":"Use of Well-Known Names in Phylogenetic Nomenclature: A Reply to Laurin","year":2002,"lang":"en","type":"letter","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Allometry; Morphometrics; Ontogeny; Biology; Landmark; Zoology; Evolutionary biology; Paleontology; Geography; Cartography","score_opus":0.042735314893627904,"score_gpt":0.23452976705155215,"score_spread":0.19179445215792423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047955375","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29364905,0.07686788,0.00023874307,0.59010625,0.0071519,0.00946855,0.0012217336,0.0002479487,0.021047983],"genre_scores_gemma":[0.75061685,0.00020976433,0.0016801724,0.24379773,0.00061930314,0.00006541074,0.00022885937,0.000012815252,0.0027690644],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971153,0.000913014,0.000890255,0.00048300263,0.00014338162,0.00045500483],"domain_scores_gemma":[0.9981439,0.000868782,0.00039887833,0.00047565062,0.000059987757,0.000052819443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003631643,0.0003073387,0.0012331837,0.00038826908,0.000049359267,0.000015262347,0.00035472278,0.00072005106,0.00071667304],"category_scores_gemma":[0.00029503205,0.0002207228,0.00012434725,0.0002738551,0.00019765901,0.000026545316,0.00003393833,0.00061170437,0.0005256058],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013236733,0.000012673691,0.8054153,0.013311373,0.00017452346,0.000109505716,0.0006524261,0.000069650385,0.0000060304747,0.000032468273,0.18014523,0.000057607587],"study_design_scores_gemma":[0.0007738147,0.0013827131,0.7904211,0.010936359,0.00034671853,0.00038104958,0.0003216327,0.0015908404,0.0000132493215,0.0017202228,0.19043395,0.0016783174],"about_ca_topic_score_codex":0.0014158668,"about_ca_topic_score_gemma":0.011343,"teacher_disagreement_score":0.45696783,"about_ca_system_score_codex":0.000009849154,"about_ca_system_score_gemma":0.000028420789,"threshold_uncertainty_score":0.9000814},"labels":[],"label_agreement":null},{"id":"W2051062503","doi":"10.1093/sysbio/syu099","title":"Bayesian Long Branch Attraction Bias and Corrections","year":2014,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Attraction; Bayesian probability; Tree (set theory); Set (abstract data type); Star (game theory); Bayesian network; Biology; Computer science; Mathematics; Statistics; Algorithm; Statistical physics; Physics; Combinatorics; Mathematical analysis","score_opus":0.017635700974420892,"score_gpt":0.24739328538634195,"score_spread":0.22975758441192107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051062503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8823461,0.00021989195,0.115959786,0.00008675031,0.0004957303,0.0002244838,0.0000049154264,0.000014847352,0.00064753206],"genre_scores_gemma":[0.99908316,0.000009855654,0.0003453777,0.00013968986,0.000117785494,0.000010222282,0.00004887133,0.000005332571,0.0002397103],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99924666,0.00022636299,0.00017669988,0.00020052379,0.00003778353,0.00011194992],"domain_scores_gemma":[0.9995777,0.000028028486,0.00010412776,0.00019741342,0.000043156593,0.000049565737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002280316,0.00009073263,0.00016570787,0.000038524646,0.00010348827,0.000017904196,0.000065097345,0.00018049471,0.000022152495],"category_scores_gemma":[0.00014891865,0.0000771464,0.00004108071,0.000042582473,0.000054339478,0.0000019391919,0.000049354552,0.00005345989,0.000012922694],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052976964,0.00005051316,0.8592982,0.0062025124,0.0002514997,8.962702e-7,0.00041122304,0.00044573226,0.12505952,0.0045460123,0.00048107927,0.003199811],"study_design_scores_gemma":[0.0040255426,0.0020176196,0.907565,0.0017530619,0.0006565254,0.00089173374,0.0013953465,0.008362259,0.04707744,0.015056414,0.009166669,0.0020324],"about_ca_topic_score_codex":0.00002193478,"about_ca_topic_score_gemma":0.00006122623,"teacher_disagreement_score":0.11673709,"about_ca_system_score_codex":0.000004138224,"about_ca_system_score_gemma":0.000009552821,"threshold_uncertainty_score":0.31459388},"labels":[],"label_agreement":null},{"id":"W2051846346","doi":"10.1080/10635150500221044","title":"Poriferan mtDNA and Animal Phylogeny Based on Mitochondrial Gene Arrangements","year":2005,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; Université de Montréal","funders":"Canadian Institutes of Health Research; Health Canada; Genome Canada","keywords":"Biology; Phylum; Mitochondrial DNA; Phylogenetic tree; Phylogenetics; Deuterostome; Evolutionary biology; Zooid; Zoology; Gene; Genetics","score_opus":0.010703899273776863,"score_gpt":0.23896494421566286,"score_spread":0.228261044941886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051846346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951932,0.0018501028,0.0011281623,0.00027399766,0.00031330402,0.00065010577,0.00003814276,0.0000068820655,0.00054610637],"genre_scores_gemma":[0.99511266,0.000037250953,0.0034147783,0.00060733093,0.00061195384,0.00011044096,0.000031955024,0.000018221997,0.00005541157],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998739,0.00016052248,0.00034191195,0.00041728996,0.00007242715,0.00026883025],"domain_scores_gemma":[0.9993422,0.000030558902,0.00012762046,0.0003744711,0.000050399714,0.00007474009],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019156738,0.0002159957,0.00034967292,0.00005265753,0.000095334675,0.000017118906,0.00015919108,0.0001732395,0.000011453767],"category_scores_gemma":[0.000073335796,0.00017283484,0.00008459066,0.00003844755,0.00009059951,4.794005e-7,0.00009841304,0.0000595602,0.000017586957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010893119,0.000057640784,0.004078705,0.0005839057,0.00012323158,0.0000010651696,0.000058030255,0.000057052326,0.994489,0.00019955807,0.00009678889,0.00014609697],"study_design_scores_gemma":[0.015054566,0.010885543,0.07744561,0.0014251891,0.00074549444,0.00017247333,0.0006197039,0.010255022,0.8677346,0.0014204873,0.0109326225,0.0033086701],"about_ca_topic_score_codex":0.0000065232007,"about_ca_topic_score_gemma":0.000014672621,"teacher_disagreement_score":0.12675437,"about_ca_system_score_codex":0.000012778742,"about_ca_system_score_gemma":0.000028328473,"threshold_uncertainty_score":0.70480007},"labels":[],"label_agreement":null},{"id":"W2060714838","doi":"10.1080/10635150290102348","title":"Phylogeny Reconstruction and Functional Constraints in Organellar Genomes: Plastid atpB and rbcL Sequences Versus Animal Mitochondrion","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Higher Education Authority; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Systematics; Plastid; Genome; Evolutionary biology; Library science; Botany; Genetics; Taxonomy (biology); Gene; Chloroplast; Computer science","score_opus":0.0241719930373025,"score_gpt":0.22052164242070343,"score_spread":0.19634964938340094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060714838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873832,0.011435262,0.00008428019,0.000060476636,0.00040904986,0.00033488774,0.000020379517,0.000004066385,0.00026843013],"genre_scores_gemma":[0.99793386,0.0013167809,0.0005327002,0.000031073327,0.00011033431,0.000037687765,0.000010119124,0.000008782931,0.000018678309],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99894047,0.0001299148,0.00031844463,0.00036941894,0.000043780317,0.00019799978],"domain_scores_gemma":[0.9995819,0.0000654281,0.00011941195,0.0001375327,0.00004282405,0.00005292899],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015648565,0.00016510513,0.00029170117,0.000062835454,0.000080341684,0.000016769813,0.000056840494,0.00018500122,0.000025081477],"category_scores_gemma":[0.000093748175,0.00014074068,0.000031305553,0.0000546134,0.00036906335,0.0000013424619,0.00008732564,0.00006694319,0.0000061909436],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000904845,0.000023108149,0.040135004,0.0009041544,0.00016294973,0.0000034267869,0.00023416564,0.000015460377,0.9572802,0.00042740052,0.0000289291,0.00069467037],"study_design_scores_gemma":[0.042653676,0.020446539,0.6964108,0.005699339,0.0014807811,0.011605716,0.031674527,0.015609946,0.15446395,0.010111418,0.0016146422,0.008228697],"about_ca_topic_score_codex":0.000011067127,"about_ca_topic_score_gemma":0.0000457658,"teacher_disagreement_score":0.8028163,"about_ca_system_score_codex":0.000014969987,"about_ca_system_score_gemma":0.00001773687,"threshold_uncertainty_score":0.5739238},"labels":[],"label_agreement":null},{"id":"W2064291430","doi":"10.1080/10635150701611258","title":"Exploring Fast Computational Strategies for Probabilistic Phylogenetic Analysis","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"Centre National de la Recherche Scientifique; Génome Québec","keywords":"Markov chain Monte Carlo; Computer science; Likelihood function; Bayesian probability; Model selection; Approximate Bayesian computation; Bayes factor; Bayes' theorem; Laplace's method; Machine learning; Algorithm; Artificial intelligence; Estimation theory","score_opus":0.061049208386364275,"score_gpt":0.2871162810570962,"score_spread":0.22606707267073192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064291430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7626717,0.000812869,0.23547289,0.000020852814,0.00015806656,0.000674757,0.00003123213,0.0000062228783,0.0001513709],"genre_scores_gemma":[0.992776,0.000013360718,0.0065553635,0.00005554803,0.00014751137,0.00033128422,0.00008782632,0.000014497418,0.000018612867],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986522,0.00007803669,0.00050157873,0.00038103844,0.00006532943,0.00032180556],"domain_scores_gemma":[0.9991659,0.00013453713,0.00017475412,0.00028608428,0.00017815086,0.00006056458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006356585,0.00018422968,0.0004259436,0.00012653129,0.000112403366,0.000025937969,0.00018142516,0.00009964512,0.0000027250915],"category_scores_gemma":[0.0001091416,0.00015450476,0.0002071494,0.00017599105,0.00010755483,9.4922e-7,0.00008924466,0.000037448153,0.0000033107815],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029429095,0.00029386874,0.055908427,0.017112257,0.009310021,0.0000045304078,0.00216663,0.12161481,0.7269091,0.06535422,0.00004484722,0.0009869946],"study_design_scores_gemma":[0.01007247,0.00897273,0.57761776,0.0017671844,0.012824778,0.0002075575,0.039633516,0.055374447,0.05661183,0.22863297,0.0013182856,0.0069664917],"about_ca_topic_score_codex":0.000011203648,"about_ca_topic_score_gemma":0.000097387325,"teacher_disagreement_score":0.67029727,"about_ca_system_score_codex":0.00001567617,"about_ca_system_score_gemma":0.000057634876,"threshold_uncertainty_score":0.6300521},"labels":[],"label_agreement":null},{"id":"W2084830736","doi":"10.1080/10635150290102519","title":"Combined Nuclear and Mitochondrial DNA Sequences Resolve Generic Relationships within the Cracidae (Galliformes, Aves)","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Biology; Phylogenetic tree; Maximum parsimony; Mitochondrial DNA; Clade; Sister group; Evolutionary biology; Nuclear gene; Phylogenetics; Nuclear DNA; Genetics; Gene","score_opus":0.02895487210793953,"score_gpt":0.2190796633425337,"score_spread":0.19012479123459416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084830736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961226,0.0009869798,0.0005022628,0.00068369904,0.0004581252,0.0005467789,0.000019247851,0.000019087962,0.0006612207],"genre_scores_gemma":[0.9976674,0.00003349461,0.0015380175,0.0002792617,0.00013484963,0.000016433985,0.000039285685,0.000009277807,0.0002820055],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986826,0.0004642795,0.00033473512,0.0002694159,0.000088055705,0.00016091761],"domain_scores_gemma":[0.9992587,0.00005075703,0.00021877085,0.00035508827,0.000055053333,0.000061659324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002709528,0.00014615702,0.00022323741,0.000034397945,0.00032282528,0.000044182383,0.00022683751,0.00026361307,0.000060108596],"category_scores_gemma":[0.0002507119,0.00009614718,0.00006153439,0.00008183995,0.0002086579,0.000004256756,0.00012155012,0.00013603507,0.00004093545],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040966217,0.00019722093,0.17819855,0.008619059,0.0014965307,0.000020312646,0.014347872,0.0012986949,0.67669994,0.104532756,0.013868226,0.00031120086],"study_design_scores_gemma":[0.03412114,0.014587178,0.47952926,0.007766832,0.0052380627,0.0045742206,0.06962984,0.0877903,0.06988298,0.16798683,0.04527171,0.013621626],"about_ca_topic_score_codex":0.000013406606,"about_ca_topic_score_gemma":0.000030590785,"teacher_disagreement_score":0.60681695,"about_ca_system_score_codex":0.000007734738,"about_ca_system_score_gemma":0.000013279719,"threshold_uncertainty_score":0.39207682},"labels":[],"label_agreement":null},{"id":"W2086293112","doi":"10.1093/sysbio/syu070","title":"The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters","year":2014,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":510,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Boulevard; Columbia university; Biology; Archaeology; Biodiversity; Categorical variable; Geography; Ecology; Media studies; Sociology","score_opus":0.018538047655652624,"score_gpt":0.2615785351934117,"score_spread":0.24304048753775906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086293112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8641588,0.0005292782,0.13036653,0.0016109281,0.0011430087,0.0018737327,0.000016282836,0.000022646998,0.0002787558],"genre_scores_gemma":[0.9985398,0.000010603796,0.0005619938,0.0002901425,0.00020046557,0.00012114162,0.00008220651,0.000009406202,0.00018426358],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990001,0.00020143947,0.00026481334,0.00025719774,0.00006022597,0.0002162699],"domain_scores_gemma":[0.99922854,0.000113632785,0.0001306184,0.0003505638,0.000103285936,0.000073332325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038471693,0.00012512124,0.00019839317,0.00002876034,0.00018987202,0.000022319038,0.00022828918,0.00019153743,0.0000027240942],"category_scores_gemma":[0.00038969563,0.000084922576,0.00007846864,0.00005026238,0.000047454436,0.0000010369965,0.00007772427,0.00004614918,0.000027640037],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009337913,0.00025688432,0.074088395,0.013064729,0.0011662716,0.0000017498586,0.003177351,0.0052568857,0.6731465,0.2123799,0.0047453535,0.011782233],"study_design_scores_gemma":[0.015339346,0.019089056,0.5399752,0.0020302255,0.0017385011,0.00030983076,0.004252311,0.03778873,0.0472214,0.15036434,0.17519133,0.006699738],"about_ca_topic_score_codex":0.0000043559394,"about_ca_topic_score_gemma":0.000028696277,"teacher_disagreement_score":0.62592506,"about_ca_system_score_codex":0.000009819432,"about_ca_system_score_gemma":0.000018294944,"threshold_uncertainty_score":0.3463042},"labels":[],"label_agreement":null},{"id":"W2095690216","doi":"10.1080/10635150390196948","title":"18S Ribosomal RNA and Tetrapod Phylogeny","year":2003,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; University of Ottawa","keywords":"18S ribosomal RNA; Biology; Phylogenetic tree; Ribosomal RNA; Phylogenetics; Evolutionary biology; 28S ribosomal RNA; Gene; Genetics; RNA; Ribosome","score_opus":0.010058305023055682,"score_gpt":0.2298329010433353,"score_spread":0.21977459602027963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095690216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98638,0.009622048,0.00074951805,0.000038796883,0.0002624473,0.00039590203,0.000013480315,0.0000048959,0.0025329152],"genre_scores_gemma":[0.99820864,0.00014280567,0.0012369889,0.00015621644,0.00007187168,0.00006558365,0.0000070211427,0.000013866287,0.000096977434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988273,0.00021748227,0.00032719583,0.00033272212,0.000040913594,0.00025442822],"domain_scores_gemma":[0.9994131,0.000032357515,0.00011516031,0.00031661926,0.00005520006,0.00006757415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003240921,0.00017367034,0.00032185155,0.000034927827,0.00009105893,0.00001576689,0.00011897524,0.00016667398,0.000007427416],"category_scores_gemma":[0.00023535156,0.00013651937,0.00006897992,0.00004513693,0.00013197563,3.3130684e-7,0.00009338392,0.000053274016,0.000009792571],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008324448,0.000028800754,0.019533139,0.001420126,0.0001997426,0.0000015055368,0.00009453675,0.0000040917384,0.9686715,0.009919593,0.00005156479,0.000067078676],"study_design_scores_gemma":[0.0073580816,0.004672796,0.09533809,0.001534642,0.0008169377,0.001429373,0.003300947,0.00023866493,0.81802076,0.045561373,0.017797157,0.0039311503],"about_ca_topic_score_codex":0.0000053703343,"about_ca_topic_score_gemma":0.000009946105,"teacher_disagreement_score":0.15065071,"about_ca_system_score_codex":0.0000055149885,"about_ca_system_score_gemma":0.00003053665,"threshold_uncertainty_score":0.5567098},"labels":[],"label_agreement":null},{"id":"W2095774894","doi":"10.1093/sysbio/sys046","title":"Fitting Nonstationary General-Time-Reversible Models to Obtain Edge-Lengths and Frequencies for the Barry–Hartigan Model","year":2012,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada","keywords":"Identifiability; Pairwise comparison; Enhanced Data Rates for GSM Evolution; Mathematics; Markov chain; Algorithm; Markov model; Combinatorics; Applied mathematics; Computer science; Statistics; Artificial intelligence","score_opus":0.0303649080816073,"score_gpt":0.25790059479818933,"score_spread":0.22753568671658203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095774894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9224217,0.009353051,0.06571558,0.00059158215,0.00019408696,0.001352143,0.000088213776,0.000007044146,0.00027662743],"genre_scores_gemma":[0.98196507,0.00008684165,0.016497638,0.0005061484,0.00020474709,0.00039788353,0.000021076326,0.000016796166,0.00030383145],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9989674,0.00009997282,0.0003038566,0.0002448245,0.000047366626,0.00033657992],"domain_scores_gemma":[0.99923104,0.00015755864,0.00013078612,0.0002944697,0.0000979159,0.00008824236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006391587,0.00016523123,0.00026905688,0.000033812656,0.00022611675,0.000016420085,0.00017483052,0.000116317075,0.0000023322502],"category_scores_gemma":[0.0001801007,0.00011297038,0.0000751201,0.00004291606,0.00008428869,0.0000023140376,0.00018747782,0.000039743667,0.000006144982],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003038022,0.000030222127,0.0015119949,0.0014847398,0.0002825055,1.11263084e-7,0.0019451679,0.0130812,0.97151953,0.008632173,0.0012817116,0.00020024304],"study_design_scores_gemma":[0.002672453,0.0012411225,0.0019164273,0.000926579,0.0008543558,0.00012593665,0.008311529,0.825854,0.109404944,0.0446355,0.0018775411,0.0021796366],"about_ca_topic_score_codex":0.000015294661,"about_ca_topic_score_gemma":0.000006874591,"teacher_disagreement_score":0.8621146,"about_ca_system_score_codex":0.000011842366,"about_ca_system_score_gemma":0.000042822234,"threshold_uncertainty_score":0.46067986},"labels":[],"label_agreement":null},{"id":"W2098538101","doi":"10.1080/10635150500433722","title":"Computing Bayes Factors Using Thermodynamic Integration","year":2006,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":716,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"Centre National de la Recherche Scientifique","keywords":"Bayes factor; Estimator; Bayes' theorem; Marginal likelihood; Harmonic mean; Mathematics; Bayesian probability; Applied mathematics; Bayes estimator; Harmonic; Statistics; Econometrics; Statistical physics; Computer science; Algorithm; Physics","score_opus":0.014691561810578827,"score_gpt":0.25046468964144675,"score_spread":0.23577312783086793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098538101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96231383,0.001215118,0.03560713,0.000011105407,0.00023356538,0.00029519558,0.000009283842,0.0000066966386,0.0003080949],"genre_scores_gemma":[0.99844146,0.000004795657,0.0013053925,0.000023860272,0.00013672317,0.000007323302,0.000046132194,0.000012778186,0.000021529515],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908876,0.00013770201,0.00032097052,0.00023301328,0.00003681973,0.00018271623],"domain_scores_gemma":[0.99952275,0.000028336339,0.00015940281,0.00021496712,0.0000556143,0.000018957864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017750646,0.00014784848,0.0002556831,0.000036500398,0.00009648718,0.0000158387,0.00012113756,0.0001271458,0.000002195272],"category_scores_gemma":[0.000042914988,0.00010794516,0.00008051747,0.000042465235,0.00006185094,3.6234744e-7,0.000095692674,0.00004072513,0.0000025103177],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000032279938,0.000014981304,0.027233852,0.00045263986,0.000053130327,2.3905798e-7,0.00006918268,0.000303291,0.9703331,0.001500345,0.000005206414,0.000030826126],"study_design_scores_gemma":[0.0028575636,0.0015662059,0.2980591,0.0033138846,0.00067855173,0.00021708329,0.006390538,0.17924683,0.47434258,0.029849352,0.0001540941,0.0033242085],"about_ca_topic_score_codex":0.000191196,"about_ca_topic_score_gemma":0.000085664644,"teacher_disagreement_score":0.4959905,"about_ca_system_score_codex":0.000016074553,"about_ca_system_score_gemma":0.000021185691,"threshold_uncertainty_score":0.4401876},"labels":[],"label_agreement":null},{"id":"W2099002894","doi":"10.1080/10635150119889","title":"The Phylogenetic Trunk: Maximal Inclusion of Taxa with Missing Data in an Analysis of the Lepospondyli (Vertebrata, Tetrapoda)","year":2001,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Taxon; Phylogenetic tree; Biology; Completeness (order theory); Phylogenetics; Tree (set theory); A priori and a posteriori; Trunk; Evolutionary biology; Ecology; Mathematics; Combinatorics; Genetics","score_opus":0.03330820857697023,"score_gpt":0.2678247800388728,"score_spread":0.23451657146190255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099002894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945498,0.003979774,0.00026677572,0.00031830958,0.00009012561,0.00027732775,0.000061323946,0.0000049517844,0.0004515755],"genre_scores_gemma":[0.99966025,0.000039645958,0.00018794242,0.000042084364,0.000008175528,0.0000015860294,0.000047265567,0.0000011109672,0.000011924145],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981912,0.00082324253,0.0004679588,0.00020566575,0.00013524678,0.00017671855],"domain_scores_gemma":[0.9984107,0.00045791993,0.00034779112,0.0007117933,0.000045081273,0.000026728136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010027424,0.00009758382,0.0004619794,0.00011579055,0.00028824675,0.000007467878,0.000707346,0.00007530754,0.000057735735],"category_scores_gemma":[0.00015244735,0.000041853782,0.00004597626,0.0006602765,0.00044551492,0.00004448631,0.00012496287,0.0000814699,0.0000015147507],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035716956,0.000014286064,0.99801874,0.00029866508,0.00018518761,0.0000015050197,0.00052183523,0.00032436426,0.00013015242,0.00010541618,0.0000017789271,0.00036237345],"study_design_scores_gemma":[0.00014235348,0.00011092627,0.9492341,0.00017036722,0.00024343307,0.000011962081,0.0010276876,0.048778996,0.000011495146,0.00020500881,0.000008975726,0.00005467049],"about_ca_topic_score_codex":0.0015348081,"about_ca_topic_score_gemma":0.26660728,"teacher_disagreement_score":0.2650725,"about_ca_system_score_codex":0.0000030661472,"about_ca_system_score_gemma":0.000042615862,"threshold_uncertainty_score":0.7467752},"labels":[],"label_agreement":null},{"id":"W2099502844","doi":"10.1080/10635150701258787","title":"Widespread Genealogical Nonmonophyly in Species of Pinus Subgenus Strobus","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Pacific Northwest Research Station; Natural Resources Canada; Chiba University; Oregon State University; U.S. Department of Agriculture; U.S. Forest Service; National Science Foundation","keywords":"Biology; Monophyly; Paraphyly; Coalescent theory; Phylogenetic tree; Evolutionary biology; Nucleotide diversity; Subgenus; Zoology; Taxonomy (biology); Genetics; Allele; Clade; Haplotype; Gene","score_opus":0.01980057993458255,"score_gpt":0.25206219578527284,"score_spread":0.23226161585069027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099502844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99104893,0.0006107956,0.0067077205,0.000020717514,0.00026225395,0.0003196708,0.000017785229,0.000005750705,0.0010063678],"genre_scores_gemma":[0.9982265,0.0000108849945,0.0014478178,0.000056690315,0.00006744926,0.000004678533,0.00004874663,0.0000052932987,0.00013188923],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988756,0.00013444944,0.00046554708,0.0002288474,0.0000752678,0.00022029495],"domain_scores_gemma":[0.9993718,0.000043304466,0.00018786777,0.00028225724,0.00006453624,0.00005021537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004685116,0.000123595,0.0003311751,0.00008470762,0.00002556753,0.0000052969644,0.00020387782,0.00026792736,0.000030995747],"category_scores_gemma":[0.00014652443,0.000101814934,0.00008141675,0.0000996327,0.000110711386,0.0000013792582,0.00010708893,0.000067491266,0.00001095173],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013455347,0.00006011954,0.33239824,0.0023116162,0.000082805396,0.00001272873,0.00028024867,0.00031167944,0.66138387,0.0028273936,0.000058466143,0.00013829568],"study_design_scores_gemma":[0.0019500986,0.0010103629,0.7330373,0.00064615696,0.000081211896,0.00010699507,0.001336551,0.00012400601,0.25811264,0.0024152459,0.0005770028,0.0006024615],"about_ca_topic_score_codex":0.000039634906,"about_ca_topic_score_gemma":0.00014223527,"teacher_disagreement_score":0.40327126,"about_ca_system_score_codex":0.000011770682,"about_ca_system_score_gemma":0.000024522576,"threshold_uncertainty_score":0.41518924},"labels":[],"label_agreement":null},{"id":"W2099593729","doi":"10.1093/sysbio/sys033","title":"The Probability of Correctly Resolving a Split as an Experimental Design Criterion in Phylogenetics","year":2012,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Taxon; Phylogenetic tree; A priori and a posteriori; Sequence (biology); Biology; Statistics; Sister group; Sample (material); Sampling (signal processing); Sample size determination; Evolutionary biology; Mathematics; Algorithm; Computer science; Ecology; Clade; Genetics","score_opus":0.034909775769754396,"score_gpt":0.29694276278550275,"score_spread":0.26203298701574834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099593729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9864482,0.011611088,0.0006488909,0.000018766066,0.00030038503,0.0008509919,0.000004323705,0.000002425599,0.00011487945],"genre_scores_gemma":[0.9974565,0.00005989918,0.0021626786,0.00003493291,0.000080690676,0.00017612545,0.0000050546614,0.000011614748,0.000012492636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99825597,0.0006693322,0.00047749907,0.0002251447,0.000059673417,0.000312405],"domain_scores_gemma":[0.99914426,0.00009839428,0.0001773261,0.00046259628,0.000061274564,0.00005614913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011964004,0.00014750854,0.00029370617,0.000026428417,0.00008307409,0.00001094786,0.00023448937,0.00013772694,0.0000028090806],"category_scores_gemma":[0.00025530293,0.00010020035,0.00006142075,0.000054137927,0.00017793539,0.0000010110411,0.00016977522,0.000052872896,0.000002730032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007775855,0.00012730468,0.030360669,0.0005871105,0.00004122735,2.001867e-7,0.0010122706,0.000030688723,0.96656704,0.00110285,0.000006220043,0.0000866823],"study_design_scores_gemma":[0.0009176031,0.0025698342,0.036675587,0.0004574447,0.000061459315,0.00006961488,0.0045569083,0.0006122393,0.9492948,0.004107379,0.00014692695,0.0005301813],"about_ca_topic_score_codex":0.000038231407,"about_ca_topic_score_gemma":0.000026987385,"teacher_disagreement_score":0.017272197,"about_ca_system_score_codex":0.000020441503,"about_ca_system_score_gemma":0.000041214702,"threshold_uncertainty_score":0.40860516},"labels":[],"label_agreement":null},{"id":"W2099769894","doi":"10.1080/10635150390197000","title":"Ancient Allopolyploid Speciation in Geinae (Rosaceae): Evidence from Nuclear Granule-Bound Starch Synthase (GBSSI) Gene Sequences","year":2003,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Acadia University","funders":"National Science Foundation","keywords":"Biology; Polyploid; Ploidy; Lineage (genetic); Locus (genetics); Genetics; Phylogenetics; Evolutionary biology; Gene; Phylogenetic tree; Allele","score_opus":0.024156819196784897,"score_gpt":0.2637374344915071,"score_spread":0.23958061529472222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099769894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98505604,0.012336901,0.0013102068,0.00015131263,0.00038577948,0.00060062116,0.00003815549,0.000015748394,0.000105237385],"genre_scores_gemma":[0.99791676,0.0003058443,0.0011083677,0.00014118264,0.00015491237,0.000060394468,0.00018745183,0.000013187959,0.0001119135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99803585,0.0006006143,0.00048145783,0.00047745125,0.00012177932,0.0002828598],"domain_scores_gemma":[0.9992085,0.000058787653,0.0002053403,0.00037867954,0.00007591054,0.00007277702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060681556,0.00019383001,0.00035344675,0.000062727326,0.00010229926,0.00004138659,0.00021569575,0.00028635468,0.00006874736],"category_scores_gemma":[0.00048389653,0.00014706455,0.00006963092,0.000111843365,0.00010879488,0.000010358313,0.000047213907,0.00010019169,0.000066961904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003292176,0.000043179265,0.0045215045,0.0005107638,0.00004329935,0.000011238137,0.00036696446,0.00006336585,0.99383646,0.00041894632,0.00013385872,0.000017506198],"study_design_scores_gemma":[0.0011532063,0.0007504702,0.0051134685,0.0025222087,0.000120539626,0.0001720549,0.0010102978,0.00061479834,0.9842412,0.0008877833,0.0025763744,0.00083758606],"about_ca_topic_score_codex":0.00039907455,"about_ca_topic_score_gemma":0.0018586301,"teacher_disagreement_score":0.012860708,"about_ca_system_score_codex":0.00006810572,"about_ca_system_score_gemma":0.00012873182,"threshold_uncertainty_score":0.59971184},"labels":[],"label_agreement":null},{"id":"W2100728353","doi":"10.1093/sysbio/syu098","title":"Among-Character Rate Variation Distributions in Phylogenetic Analysis of Discrete Morphological Characters","year":2014,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Log-normal distribution; Phylogenetic tree; Rate of evolution; Character (mathematics); Biology; Statistics; Bayesian probability; Mathematics; Distribution (mathematics); Evolutionary biology; Genetics","score_opus":0.014157805641008176,"score_gpt":0.23283965124036804,"score_spread":0.21868184559935985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100728353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99322045,0.00014249394,0.0055980254,0.00016348336,0.00016553399,0.00024874072,0.00010153683,0.000014606298,0.00034511543],"genre_scores_gemma":[0.9995331,0.000009852843,0.00008998109,0.000049877337,0.000016595117,0.000010947274,0.00027758002,8.1573637e-7,0.000011243801],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99796814,0.0010408005,0.0005244233,0.00021472004,0.000053546548,0.00019838037],"domain_scores_gemma":[0.9989165,0.0005320938,0.00029044447,0.00017893325,0.00003994209,0.00004208407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000912047,0.00010813802,0.0006213032,0.00021770044,0.00005579453,0.000007036806,0.00013080265,0.0001320793,0.00020307951],"category_scores_gemma":[0.00033756255,0.00007215529,0.00010605242,0.00043575137,0.00020273414,0.000033925,0.000011818073,0.000085153035,0.000037516205],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008284547,0.000009917373,0.9978372,0.00026594597,0.0002203461,0.0000011990495,0.00017130439,0.00027960096,0.0002764855,0.00091285945,9.34818e-7,0.000015934223],"study_design_scores_gemma":[0.00012263557,0.00006552634,0.97260475,0.00006715406,0.00026610398,0.0000022879442,0.000053186708,0.026148273,0.0000074678633,0.0005839208,0.0000010140927,0.00007767124],"about_ca_topic_score_codex":0.00049067347,"about_ca_topic_score_gemma":0.008864505,"teacher_disagreement_score":0.025868671,"about_ca_system_score_codex":0.0000045821653,"about_ca_system_score_gemma":0.0000075646035,"threshold_uncertainty_score":0.49466023},"labels":[],"label_agreement":null},{"id":"W2100733246","doi":"10.1080/10635150802559265","title":"The Impact of Reticulate Evolution on Genome Phylogeny","year":2008,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Atlantic School of Theology; Dalhousie University","funders":"Genome Canada","keywords":"Biology; Genome; Phylogenetic tree; Evolutionary biology; Phylogenetics; Tree (set theory); Tree of life (biology); Reticulate; Horizontal gene transfer; Reticulate evolution; Set (abstract data type); Genome evolution; Genetics; Gene; Paleontology; Computer science","score_opus":0.013998683453639303,"score_gpt":0.2552974969370502,"score_spread":0.24129881348341087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100733246","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99430233,0.0042812717,0.00035293016,0.000024294533,0.00012582156,0.00043296523,0.00001989149,0.000002762982,0.00045775893],"genre_scores_gemma":[0.9994844,0.00021571098,0.00006515727,0.000015217304,0.0000856044,0.00004780055,0.0000094547195,0.000010477085,0.00006617156],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99894047,0.00020186765,0.00036601734,0.00021228877,0.000056782195,0.000222565],"domain_scores_gemma":[0.9990996,0.000055170443,0.00021825297,0.0004859694,0.000103702405,0.00003730495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029301105,0.00014771313,0.00029271614,0.000029251672,0.00017574521,0.0000038762023,0.00021498872,0.00012168625,0.000002385767],"category_scores_gemma":[0.00014485074,0.00008173755,0.00020467084,0.000058630958,0.0002418048,2.0493664e-7,0.00010099632,0.000050024904,0.000011395208],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057503497,0.000033885004,0.013242104,0.00031429424,0.00034337808,9.3201606e-7,0.00010816026,0.0005332201,0.98396534,0.0013455758,0.000045156437,0.000010457064],"study_design_scores_gemma":[0.0015743714,0.0057508256,0.93666965,0.00041129618,0.00013907863,0.00032871522,0.0003919701,0.0006902107,0.04625927,0.0068374877,0.0001641735,0.000782932],"about_ca_topic_score_codex":0.000039529335,"about_ca_topic_score_gemma":0.0000051603015,"teacher_disagreement_score":0.93770605,"about_ca_system_score_codex":0.000026578684,"about_ca_system_score_gemma":0.00006202811,"threshold_uncertainty_score":0.33331606},"labels":[],"label_agreement":null},{"id":"W2104644229","doi":"10.1093/sysbio/syr120","title":"Pleistocene Speciation in the Genus Populus (Salicaceae)","year":2012,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; Agriculture and Agri-Food Canada; Illinois State University","keywords":"Pleistocene; Coalescent theory; Biology; Allopatric speciation; Ecology; Glacial period; Range (aeronautics); Genetic divergence; Last Glacial Maximum; Lineage (genetic); Genetic diversity; Paleontology; Phylogenetics; Population","score_opus":0.019394492249075114,"score_gpt":0.2571846341257098,"score_spread":0.2377901418766347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104644229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958497,0.0010983462,0.0010732875,0.00021847144,0.000377194,0.00045543042,0.000009143339,0.0000060302486,0.00091239554],"genre_scores_gemma":[0.99879235,0.000007680799,0.000269245,0.00047828563,0.0002603944,0.000024788687,0.000080958445,0.000004668852,0.00008161186],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989975,0.00035466775,0.00023466551,0.00013310563,0.00007199742,0.00020807373],"domain_scores_gemma":[0.99951106,0.000019994122,0.000114511575,0.00029473915,0.000025333467,0.00003436181],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005263966,0.00009520462,0.00015865131,0.00003667286,0.00005404508,0.00001097963,0.00020076247,0.00016536613,0.000021776048],"category_scores_gemma":[0.00010696138,0.000063737294,0.000052590203,0.000080445585,0.00003377575,0.00000250011,0.000060169852,0.00006369856,0.000033183336],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010989957,0.00021730378,0.92256624,0.0038515367,0.00017490888,0.0000034476511,0.005236325,0.00020627794,0.037055343,0.026049234,0.003429482,0.0011000265],"study_design_scores_gemma":[0.0014473823,0.00037515906,0.97025806,0.000280888,0.00013703504,0.00022144121,0.0031822773,0.00012390563,0.005165812,0.0018398691,0.016328923,0.0006392625],"about_ca_topic_score_codex":0.00003888081,"about_ca_topic_score_gemma":0.000056172463,"teacher_disagreement_score":0.04769183,"about_ca_system_score_codex":0.000012207511,"about_ca_system_score_gemma":0.000011830676,"threshold_uncertainty_score":0.25991315},"labels":[],"label_agreement":null},{"id":"W2105580430","doi":"10.1080/10635150701245370","title":"Properties of Supertree Methods in the Consensus Setting","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Supertree; Biology; Evolutionary biology; Computational biology; Phylogenetic tree; Genetics","score_opus":0.035930690559541054,"score_gpt":0.3218174571059653,"score_spread":0.28588676654642425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105580430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905412,0.006533187,0.0017236714,0.00013841606,0.00011113826,0.00044344927,0.0000022737572,0.0000014544055,0.00050521264],"genre_scores_gemma":[0.9937083,0.000016092401,0.0060547898,0.00012779159,0.00004515808,0.000029880703,0.0000015513783,0.0000059154695,0.000010493612],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867153,0.00048132308,0.00045710587,0.00015978831,0.00003933169,0.00019089499],"domain_scores_gemma":[0.99937594,0.00013394827,0.00012661626,0.00029222565,0.000056593286,0.000014661597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002600303,0.000099344295,0.00026449896,0.000038525606,0.000034897268,0.0000039824145,0.00019534369,0.00010401816,8.0321047e-7],"category_scores_gemma":[0.00040506033,0.000055903383,0.000061396735,0.00006215069,0.000111947425,1.1423165e-7,0.00009117951,0.000051277264,9.353726e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016136642,0.00001783856,0.01222413,0.0015029084,0.00005181971,8.404029e-7,0.0007292037,0.0000057138623,0.98473114,0.00055128435,0.000008141095,0.00016086084],"study_design_scores_gemma":[0.00063213345,0.0004121885,0.019734697,0.0007100767,0.000066671906,0.000114635164,0.010548585,0.00011446453,0.9659086,0.0012701268,0.00020064115,0.0002871838],"about_ca_topic_score_codex":0.00004071849,"about_ca_topic_score_gemma":0.000072879775,"teacher_disagreement_score":0.018822527,"about_ca_system_score_codex":0.000004575936,"about_ca_system_score_gemma":0.000024337372,"threshold_uncertainty_score":0.22796738},"labels":[],"label_agreement":null},{"id":"W2105776362","doi":"10.1080/10635150701549672","title":"Mitochondrial and Nuclear DNA Sequences Support a Cretaceous Origin of Columbiformes and a Dispersal-Driven Radiation in the Paleogene","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Paleontology and Evolutionary Biology","field":"Earth and Planetary Sciences","cited_by":135,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Monophyly; Clade; Zoology; Phylogenetic tree; Evolutionary biology; Sister group; Genetics","score_opus":0.012868918379539367,"score_gpt":0.23383833195564413,"score_spread":0.22096941357610475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105776362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99598265,0.002317397,0.00007233881,0.00019136179,0.00021660935,0.00043580952,0.000029385797,0.000008595074,0.00074586377],"genre_scores_gemma":[0.9993917,0.00010066346,0.0003249004,0.000098841985,0.000045528453,0.000003241099,0.00002973108,9.792333e-7,0.000004419207],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988258,0.00036846078,0.00036339628,0.00017665717,0.000055438835,0.00021023619],"domain_scores_gemma":[0.9991427,0.000542214,0.00015612485,0.00010458269,0.00001586328,0.00003850687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007709736,0.00008817551,0.00030694262,0.00007651168,0.00007878891,0.000008081948,0.00012786915,0.00021944339,0.00009649482],"category_scores_gemma":[0.00012455767,0.000054600434,0.000024847697,0.00009383351,0.00045514514,0.000051828316,0.0000084662015,0.000105510844,0.000009781781],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007939251,0.000008679248,0.9954647,0.0005578642,0.000027434275,0.000010691443,0.001805658,0.000005357132,0.00061909115,0.00082526804,0.000010156717,0.00058571063],"study_design_scores_gemma":[0.00040832502,0.0004793144,0.9927987,0.00010801275,0.00003428935,0.0004052655,0.0021634167,0.0024263726,0.000010226433,0.00095939555,0.000100447156,0.0001062369],"about_ca_topic_score_codex":0.0005776956,"about_ca_topic_score_gemma":0.013172673,"teacher_disagreement_score":0.012594977,"about_ca_system_score_codex":0.0000031348725,"about_ca_system_score_gemma":0.00002610992,"threshold_uncertainty_score":0.73506606},"labels":[],"label_agreement":null},{"id":"W2106947130","doi":"10.1093/sysbio/syp054","title":"Species Trees from Highly Incongruent Gene Trees in Rice","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"","keywords":"Biology; Phylogenetic tree; Evolutionary biology; Inference; Tree (set theory); Bayesian probability; Phylogenetics; Gene; Computational biology; Pipeline (software); Supermatrix; Genetics; Artificial intelligence; Computer science; Mathematics","score_opus":0.012918361664485073,"score_gpt":0.23216768427369208,"score_spread":0.21924932260920701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106947130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99069875,0.0071380027,0.00029662822,0.0003217875,0.00026319956,0.00040539258,0.00004710235,0.000006884376,0.00082221813],"genre_scores_gemma":[0.998242,0.00023407048,0.00074042607,0.000303175,0.00021952637,0.000047030666,0.000059246395,0.000009852043,0.00014466212],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99856496,0.00019395853,0.0004981179,0.00039860536,0.000062356776,0.0002820218],"domain_scores_gemma":[0.99927,0.000040052542,0.00015658097,0.00043367653,0.00004676653,0.000052913096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022129873,0.00021508281,0.0004940304,0.00006881768,0.00004957454,0.000018151748,0.0002750701,0.00019157253,0.000007756259],"category_scores_gemma":[0.00009909363,0.00016871866,0.00009856352,0.00007868714,0.00007569373,6.800093e-7,0.00011343073,0.000065399465,0.000016223235],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020351983,0.0000635523,0.012624513,0.00013049722,0.000090606416,0.0000039274128,0.00021399524,0.00005014059,0.98611164,0.0005525996,0.00006556993,0.00007260499],"study_design_scores_gemma":[0.0016198283,0.0009903574,0.7815049,0.000451816,0.00010101936,0.000022105925,0.0008890154,0.00014209207,0.20562655,0.0073309266,0.0006049864,0.0007163907],"about_ca_topic_score_codex":0.00018375719,"about_ca_topic_score_gemma":0.0007057593,"teacher_disagreement_score":0.7804851,"about_ca_system_score_codex":0.000022680935,"about_ca_system_score_gemma":0.00003205243,"threshold_uncertainty_score":0.68801475},"labels":[],"label_agreement":null},{"id":"W2107387420","doi":"10.1093/sysbio/syp103","title":"Inferring and Validating Horizontal Gene Transfer Events Using Bipartition Dissimilarity","year":2010,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"","keywords":"Heuristic; Tree (set theory); Context (archaeology); Horizontal gene transfer; Identification (biology); Algorithm; Time complexity; Polynomial; Reliability (semiconductor); Computer science; Exponential function; Reticulate; Biology; Mathematics; Artificial intelligence; Phylogenetic tree; Gene; Combinatorics; Genetics; Physics; Ecology","score_opus":0.02033264634033061,"score_gpt":0.2704887837036182,"score_spread":0.25015613736328757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107387420","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99493116,0.00042682173,0.0038737196,0.000023458002,0.0003361416,0.00033188157,0.00002162904,0.000004791371,0.000050378858],"genre_scores_gemma":[0.9977632,0.000021126436,0.0019669752,0.00003307686,0.00014815408,0.000032072436,0.000019549123,0.0000120780305,0.000003779008],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991163,0.00010025068,0.00028515083,0.00026333495,0.000040880204,0.00019407795],"domain_scores_gemma":[0.99961233,0.00001828161,0.000058884358,0.00021276232,0.000041649968,0.000056101184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031687215,0.00013873982,0.00024429624,0.000029446745,0.00012634315,0.000014276367,0.00008822614,0.00016812177,0.000004061152],"category_scores_gemma":[0.00008336266,0.00011596667,0.000054972134,0.00003035723,0.00006892096,9.891465e-7,0.0001109782,0.000090862915,0.0000011133723],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000057608036,0.000013510756,0.050859693,0.0006561342,0.00006217718,3.993556e-7,0.0000838718,0.0000072146236,0.94791865,0.00035401186,4.951541e-7,0.000038098526],"study_design_scores_gemma":[0.0016274658,0.00065560325,0.09654882,0.0006155137,0.00033505313,0.00034442957,0.0005296278,0.0020646139,0.8918338,0.0043428624,0.000085539825,0.0010166755],"about_ca_topic_score_codex":0.000032947755,"about_ca_topic_score_gemma":0.00009479476,"teacher_disagreement_score":0.056084834,"about_ca_system_score_codex":0.000005167155,"about_ca_system_score_gemma":0.000021365251,"threshold_uncertainty_score":0.47289836},"labels":[],"label_agreement":null},{"id":"W2107674477","doi":"10.1093/sysbio/syr131","title":"Phylogenetic Inference via Sequential Monte Carlo","year":2012,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bayesian Methods and Mixture Models","field":"Computer Science","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Institutes of Health; U.S. Department of Energy","keywords":"Biology; Inference; Phylogenetic tree; Monte Carlo method; Evolutionary biology; Phylogenetics; Markov chain Monte Carlo; Statistical inference; Statistical physics; Computational biology; Statistics; Artificial intelligence; Mathematics; Computer science; Genetics; Physics","score_opus":0.034380203956319605,"score_gpt":0.3100114945688999,"score_spread":0.2756312906125803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107674477","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029423371,0.0017501033,0.9667212,0.00009365875,0.0010368815,0.00040207023,0.0000012959047,0.00008744969,0.0004840071],"genre_scores_gemma":[0.8085758,0.0000032661712,0.19103147,0.00016775283,0.00011091614,0.00006661633,3.9015853e-7,0.0000054788347,0.00003832203],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.99801856,0.00078994676,0.00039427294,0.00026357593,0.00009378567,0.0004398621],"domain_scores_gemma":[0.9987684,0.00016947516,0.00016970946,0.0006977724,0.000056964534,0.00013769703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009915485,0.00016258069,0.00042351658,0.00007567293,0.00006289754,0.000038959857,0.00067507784,0.00015422962,0.000009890611],"category_scores_gemma":[0.00009572833,0.0001156948,0.000083547755,0.00014807812,0.000055736313,0.00013346349,0.00028547022,0.00011374677,0.00008828475],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005164251,0.00015784292,0.0126342615,0.010656023,0.00021484257,0.000010179378,0.005335906,0.000036700192,0.04577077,0.910476,0.000065109925,0.014637176],"study_design_scores_gemma":[0.0021711846,0.000933368,0.013365955,0.0045216726,0.0004155578,0.0012422581,0.00014529044,0.45272392,0.0237231,0.49723053,0.00024707717,0.003280103],"about_ca_topic_score_codex":0.000036168494,"about_ca_topic_score_gemma":0.0000036732397,"teacher_disagreement_score":0.7791524,"about_ca_system_score_codex":0.00002680141,"about_ca_system_score_gemma":0.00003400845,"threshold_uncertainty_score":0.4717897},"labels":[],"label_agreement":null},{"id":"W2107808362","doi":"10.1080/10635150290102429","title":"Identifiability of Parameters in MCMC Bayesian Inference of Phylogeny","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":200,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Human Genome Research Institute; National Institutes of Health","keywords":"Markov chain Monte Carlo; Bayesian inference; Bayesian probability; Inference; Identifiability; Bayes' theorem; Posterior probability; Context (archaeology); Computer science; Algorithm; Biology; Artificial intelligence; Machine learning","score_opus":0.022823161075606443,"score_gpt":0.25808388287557676,"score_spread":0.23526072179997032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107808362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99601966,0.002126546,0.0010520458,0.00001850333,0.000113256145,0.00039606818,0.000020962261,0.0000012612932,0.0002517235],"genre_scores_gemma":[0.9989936,0.00007778028,0.00083236874,0.000016991777,0.000010806053,0.00004312324,0.000004154691,0.0000060154107,0.000015157612],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998676,0.0002327545,0.0006330727,0.00024262999,0.00004989866,0.00016564573],"domain_scores_gemma":[0.999109,0.000081686616,0.00026933686,0.00043818812,0.000074407406,0.00002735602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038102904,0.00011979901,0.0004719764,0.000060290553,0.000013910519,0.0000024757533,0.00021116377,0.00013737334,0.000010764953],"category_scores_gemma":[0.00037214486,0.00009911215,0.00009663449,0.00009005246,0.0001951787,4.0018566e-7,0.0001236766,0.000042499,0.0000022485501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012441741,0.000117490024,0.17230676,0.0049478873,0.00011303539,4.5966124e-7,0.00035878894,0.00015664488,0.8213298,0.00055011053,0.000008212693,0.00009840958],"study_design_scores_gemma":[0.0023848556,0.0021936449,0.18727754,0.0021223584,0.00019977201,0.000026373551,0.0016062058,0.003739093,0.7838075,0.015623601,0.000036547983,0.0009824861],"about_ca_topic_score_codex":0.00006713059,"about_ca_topic_score_gemma":0.00006747378,"teacher_disagreement_score":0.037522238,"about_ca_system_score_codex":0.0000070872306,"about_ca_system_score_gemma":0.0000137038805,"threshold_uncertainty_score":0.4041676},"labels":[],"label_agreement":null},{"id":"W2107935311","doi":"10.1093/sysbio/syt058","title":"Accelerated Rate of Molecular Evolution for Vittarioid Ferns is Strong and Not Driven by Selection","year":2013,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Fern and Epiphyte Biology","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Molecular clock; Evolutionary biology; Selection (genetic algorithm); Mutation rate; Rate of evolution; Phylogenetic tree; Neutral theory of molecular evolution; Monophyly; Divergence (linguistics); Directional selection; Bayesian probability; Fixation (population genetics); Phylogenetics; Negative selection; Genome; Genetics; Statistics; Gene; Genetic variation; Machine learning","score_opus":0.02181045588218863,"score_gpt":0.23335359709270284,"score_spread":0.2115431412105142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107935311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99703807,0.00021944815,0.0009823805,0.0006123159,0.00008554226,0.0009674217,0.00004599971,0.000026874688,0.000021934751],"genre_scores_gemma":[0.99941856,0.00000669067,0.00010920161,0.00016387907,0.000032164997,0.00016166618,0.00006242962,9.388166e-7,0.00004448685],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989612,0.00022257665,0.00031891686,0.00022956087,0.00002970874,0.00023799959],"domain_scores_gemma":[0.99944526,0.00015197556,0.00018453186,0.000041430536,0.00012401905,0.000052809206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023904494,0.00011470307,0.00035512005,0.000012853989,0.000071810275,0.000017504979,0.00010429028,0.00019157291,0.00008492187],"category_scores_gemma":[0.00007922844,0.000044242097,0.000059025173,0.00009293335,0.00006312291,0.0000453333,0.000036220506,0.000050323168,0.000012959015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013344087,0.00001508451,0.010838283,0.00054762344,0.000034559565,4.3618396e-8,0.000031281525,0.0000013568941,0.98724496,0.00094222656,0.00013737688,0.00019384165],"study_design_scores_gemma":[0.0019308887,0.005443133,0.42088908,0.0012458892,0.0002685317,0.000051447667,0.0016403494,0.048090763,0.5046612,0.014211681,0.0002791831,0.0012878561],"about_ca_topic_score_codex":0.0010344938,"about_ca_topic_score_gemma":0.00011538923,"teacher_disagreement_score":0.4825838,"about_ca_system_score_codex":0.000035784764,"about_ca_system_score_gemma":0.000006507007,"threshold_uncertainty_score":0.18041404},"labels":[],"label_agreement":null},{"id":"W2109369144","doi":"10.1093/sysbio/syp028","title":"Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Morphological variations and asymmetry","field":"Mathematics","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Modularity (biology); Biology; Evolutionary biology; Artifact (error)","score_opus":0.10002766341993624,"score_gpt":0.3592984393712732,"score_spread":0.25927077595133696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109369144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94958836,0.0003800276,0.048434522,0.00017919969,0.000053490185,0.000713029,0.000041112708,0.00003536771,0.0005749091],"genre_scores_gemma":[0.96991324,0.000002060622,0.02991592,0.00009250242,0.00000814216,0.000014506395,0.000038916558,0.000005294924,0.000009432309],"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.99829656,0.00032603648,0.000778305,0.00027939345,0.000098295444,0.0002213897],"domain_scores_gemma":[0.9983161,0.00048365144,0.00032613965,0.0007889366,0.000045524695,0.000039658695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013169777,0.00012556679,0.0005919881,0.00011374699,0.000023502253,0.000010444586,0.00041025653,0.00014151557,0.000150321],"category_scores_gemma":[0.0015682081,0.000087258355,0.00004837695,0.00021697786,0.00003599422,0.000041996438,0.00013878751,0.0001012992,0.000052649397],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035757916,0.0015077183,0.0051563694,0.019820157,0.00022820749,0.00007437084,0.0007051662,0.00010439706,0.5124471,0.45831308,0.00034521616,0.0012624325],"study_design_scores_gemma":[0.0016816162,0.00068256474,0.015240415,0.006091374,0.00028198343,0.00013871139,0.00078403833,0.03914135,0.019206079,0.91584533,0.000016686101,0.0008898741],"about_ca_topic_score_codex":0.000008768301,"about_ca_topic_score_gemma":0.0000033940898,"teacher_disagreement_score":0.49324104,"about_ca_system_score_codex":0.000021842214,"about_ca_system_score_gemma":0.000029604458,"threshold_uncertainty_score":0.35582924},"labels":[],"label_agreement":null},{"id":"W2113153420","doi":"10.1080/10635150390132939","title":"Branch Lengths and Support","year":2003,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"","keywords":"Biology; Evolutionary biology; Computational biology","score_opus":0.019367444768732107,"score_gpt":0.23607015988470262,"score_spread":0.2167027151159705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113153420","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.814802,0.012481037,0.0009079315,0.00040450224,0.001033002,0.0005796977,0.000022220178,0.00007799994,0.16969164],"genre_scores_gemma":[0.99924666,0.000036278117,0.0002306112,0.00022364923,0.000012989594,0.0000028146694,0.000005203222,6.961566e-7,0.00024112186],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991666,0.0003035749,0.00019727797,0.00013732175,0.00003230166,0.00016290817],"domain_scores_gemma":[0.9995564,0.00022225856,0.000058578116,0.000100114,0.000016842698,0.000045810124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041403846,0.00007401527,0.00024839997,0.000034058667,0.000095100215,0.0000073107185,0.00005053524,0.00007469354,0.0006548509],"category_scores_gemma":[0.00018753148,0.000049032653,0.000021908007,0.000046556634,0.00013017948,0.00002410311,0.0000036335086,0.000052801963,0.00025225183],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000015385025,0.0000024172168,0.9903526,0.001213693,0.000027012651,0.0000014649064,0.0002062384,0.0000013948693,0.0000071523373,0.008000203,0.000069497604,0.00011681463],"study_design_scores_gemma":[0.0004132036,0.0002169171,0.98307705,0.00019891448,0.00004925725,0.00031167202,0.0008021879,0.0002690934,0.000019922883,0.013236983,0.0011759547,0.00022886024],"about_ca_topic_score_codex":0.000055999055,"about_ca_topic_score_gemma":0.0026287737,"teacher_disagreement_score":0.18444467,"about_ca_system_score_codex":8.4700696e-7,"about_ca_system_score_gemma":0.000014428541,"threshold_uncertainty_score":0.71701586},"labels":[],"label_agreement":null},{"id":"W2113525598","doi":"10.1093/sysbio/syr107","title":"Best Practices for Justifying Fossil Calibrations","year":2011,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":788,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council; University of Bristol; Sight Research UK; Leverhulme Trust; University of Utah; National Evolutionary Synthesis Center; California State University, East Bay; John D. and Catherine T. MacArthur Foundation; National Science Foundation","keywords":"Scopus; Biology; Process (computing); Computer science; MEDLINE; Programming language","score_opus":0.30944221298202496,"score_gpt":0.34461197222247386,"score_spread":0.035169759240448906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113525598","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4727573,0.043986894,0.07549371,0.003138409,0.0068494543,0.0061724233,0.00041932488,0.00048534438,0.39069715],"genre_scores_gemma":[0.9934471,0.000015721731,0.0059676133,0.00011013917,0.000060670962,0.0000343066,0.000016064261,0.00000128862,0.00034704283],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991281,0.00020301378,0.00028298327,0.00016244758,0.00003448593,0.00018896647],"domain_scores_gemma":[0.9988544,0.0005714207,0.00034046933,0.00013641035,0.00005257043,0.000044706783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039386557,0.000085178544,0.0002458436,0.000048707112,0.0002406204,0.000012481792,0.00012997864,0.00009778547,0.00030958367],"category_scores_gemma":[0.00065553235,0.00005758043,0.00004824062,0.00006340468,0.000116588926,0.000092057366,0.0000071258314,0.000055386503,0.00018704105],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002359963,0.000024937703,0.979536,0.0057887053,0.00013341023,0.0000018737096,0.0022173983,0.000007723704,0.000021947717,0.011587619,0.00023440844,0.000422407],"study_design_scores_gemma":[0.0021532578,0.002306045,0.8534568,0.003003362,0.0014085901,0.00034076234,0.03787359,0.044080533,0.00018849145,0.04938786,0.0043033804,0.00149734],"about_ca_topic_score_codex":0.0014822121,"about_ca_topic_score_gemma":0.028475184,"teacher_disagreement_score":0.52068985,"about_ca_system_score_codex":0.00000156195,"about_ca_system_score_gemma":0.000027790371,"threshold_uncertainty_score":0.9892526},"labels":[],"label_agreement":null},{"id":"W2113679965","doi":"10.1080/10635150290069931","title":"Type 1 Error Rates of the Parsimony Permutation Tail Probability Test","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Zoo; University of Toronto","funders":"","keywords":"Biology; Permutation (music); Type I and type II errors; Statistics; Evolutionary biology; Test (biology); Mathematics; Paleontology","score_opus":0.07368936097149457,"score_gpt":0.26371030604252493,"score_spread":0.19002094507103034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113679965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891061,0.0036599617,0.000022211083,0.00084998965,0.00045851932,0.00053765724,0.000022913195,0.00002031664,0.005322297],"genre_scores_gemma":[0.99961096,0.000011237244,0.0001144755,0.00007723032,0.000015200602,0.000004062094,0.000004660626,6.9001067e-7,0.00016149919],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990391,0.00036926835,0.00029153345,0.00012166605,0.00005550359,0.00012289961],"domain_scores_gemma":[0.9990439,0.0005095975,0.00017085079,0.00018131478,0.00007423175,0.000020135038],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031467053,0.00007175881,0.00023687455,0.00001989075,0.00010355382,0.000004040271,0.00014154571,0.00007256004,0.0005470816],"category_scores_gemma":[0.0008658175,0.000036946596,0.000043452077,0.00014002416,0.0002493875,0.00002373364,0.000009566873,0.00006045418,0.0001548156],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000002028925,0.000012094563,0.9977669,0.0013252551,0.000017800448,1.5622055e-7,0.00043210803,0.0000422532,0.0000273266,0.00020011219,0.00013866997,0.00003526391],"study_design_scores_gemma":[0.000093227805,0.000107017855,0.988645,0.00017481696,0.000028068265,0.0000090241665,0.00040051082,0.008192698,0.000024007388,0.002240447,0.000025420502,0.00005976496],"about_ca_topic_score_codex":0.0001490018,"about_ca_topic_score_gemma":0.005474597,"teacher_disagreement_score":0.01050481,"about_ca_system_score_codex":0.000002553194,"about_ca_system_score_gemma":0.000010619138,"threshold_uncertainty_score":0.59901595},"labels":[],"label_agreement":null},{"id":"W2114456327","doi":"10.1080/10635150701286549","title":"Seeing the Trees for the Network: Consensus, Information Content, and Superphylogenies","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Content (measure theory); Mathematics","score_opus":0.02571795915562187,"score_gpt":0.24648002346986186,"score_spread":0.22076206431424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114456327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9684237,0.015203152,0.013906343,0.0006803243,0.0003232253,0.0012951434,0.000022763654,0.000004220015,0.00014113315],"genre_scores_gemma":[0.9984844,0.0001393033,0.0005062965,0.0005221032,0.00019048058,0.000108660046,0.00001169423,0.0000056646277,0.00003141516],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99919003,0.00007921915,0.00034291839,0.00011630556,0.00003324472,0.00023827645],"domain_scores_gemma":[0.9990869,0.00042198377,0.00014047718,0.00022986875,0.000097665616,0.0000231108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011432243,0.0001148918,0.00018833095,0.00001121037,0.0002879351,0.000025684243,0.0001438546,0.00009510268,6.3361915e-7],"category_scores_gemma":[0.00019873517,0.0000564041,0.00006599702,0.000031811902,0.00021020712,5.4583023e-7,0.00011698499,0.000040802886,0.0000012972368],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005994217,0.00004731013,0.21471737,0.0071929367,0.0033582086,0.0000013283723,0.005125015,0.00081674184,0.6812522,0.07616674,0.0031380113,0.007584712],"study_design_scores_gemma":[0.009498744,0.0042966926,0.6701525,0.0017473807,0.0022347567,0.0010257986,0.07815377,0.008338852,0.07133734,0.020449659,0.12969525,0.0030692574],"about_ca_topic_score_codex":0.000025267096,"about_ca_topic_score_gemma":0.0001734341,"teacher_disagreement_score":0.60991484,"about_ca_system_score_codex":0.0000042523216,"about_ca_system_score_gemma":0.000016418822,"threshold_uncertainty_score":0.23000924},"labels":[],"label_agreement":null},{"id":"W2114833153","doi":"10.1093/sysbio/syr034","title":"The Parameters of the Barry and Hartigan General Markov Model Are Statistically NonIdentifiable","year":2011,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bayesian Modeling and Causal Inference","field":"Computer Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Markov chain; Markov model; Evolutionary biology; Statistical physics; Mathematics; Statistics; Physics","score_opus":0.03792377093118645,"score_gpt":0.2403129157332446,"score_spread":0.20238914480205814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114833153","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14526081,0.00019442009,0.8535821,0.00023289991,0.00022741761,0.00025171856,0.0000050846284,0.000021776597,0.00022378862],"genre_scores_gemma":[0.9257247,0.000006122804,0.07400887,0.000111648726,0.00000427821,0.000034140052,1.868314e-7,0.0000034197637,0.000106628744],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9987873,0.0003259301,0.00038427388,0.00020870056,0.000093172515,0.00020061452],"domain_scores_gemma":[0.9988157,0.00019034333,0.00022447777,0.0006403565,0.00008006676,0.000049063627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000720614,0.00009558174,0.00023744567,0.000019333249,0.00014351906,0.00005380591,0.00074495026,0.00006423467,0.0000015265891],"category_scores_gemma":[0.00016314589,0.00004640158,0.000042041425,0.00007782464,0.00023007396,0.000052210846,0.00027141126,0.00009300273,0.0000043699974],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000133621,0.00005498603,0.006186005,0.0042983843,0.00013801327,0.0000034147338,0.0029320875,0.00043391917,0.0035950555,0.98072886,0.00029649885,0.0013194265],"study_design_scores_gemma":[0.00007009596,0.000032887114,0.0013124336,0.00043113684,0.00001863175,0.000013886973,0.000070725175,0.8777168,0.0007265351,0.11952394,3.0644836e-7,0.00008263162],"about_ca_topic_score_codex":0.0000660097,"about_ca_topic_score_gemma":0.000024520989,"teacher_disagreement_score":0.87728286,"about_ca_system_score_codex":0.000008122833,"about_ca_system_score_gemma":0.000051490595,"threshold_uncertainty_score":0.18922016},"labels":[],"label_agreement":null},{"id":"W2115589286","doi":"10.1093/sysbio/syp010","title":"Disentangling Reticulate Evolution in an Arctic–Alpine Polyploid Complex","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Newfoundland and Labrador; Akademie der Naturwissenschaften; Universität Zürich; National Health Insurance Service; Université du Québec à Trois-Rivières; American Museum of Natural History; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Reticulate evolution; Polyploid; Reticulate; Phylogenetic tree; Evolutionary biology; Ploidy; Plant evolution; Coalescent theory; Lineage (genetic); Phylogenetics; Genetics; Genome; Botany; Gene","score_opus":0.018493009260311645,"score_gpt":0.27202445834242894,"score_spread":0.2535314490821173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115589286","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962174,0.0003330033,0.0025515717,0.00018931538,0.00014645136,0.00037089197,0.00000975847,0.000015942262,0.00016564684],"genre_scores_gemma":[0.9986233,0.000004307332,0.0008369189,0.000191182,0.000094238705,0.000005821305,0.00020183457,0.0000054291227,0.00003697241],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998874,0.0002456142,0.00032258686,0.0002822313,0.00006661137,0.00020893844],"domain_scores_gemma":[0.9994171,0.000007256017,0.00012245517,0.00032532704,0.00006126146,0.00006655604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001973523,0.00013218199,0.00025120698,0.00007282124,0.00005787099,0.000016265843,0.00016410007,0.00019016436,0.000034123674],"category_scores_gemma":[0.00006925201,0.00011592643,0.000058168076,0.00009464538,0.000047637703,0.0000039536017,0.000046709418,0.000069327616,0.000009797756],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112529466,0.000116917305,0.41596094,0.001634169,0.000051682062,0.0000051900247,0.0004103996,0.0013144269,0.5703817,0.009867984,0.000039532017,0.0001045248],"study_design_scores_gemma":[0.0016927117,0.0010443177,0.97244745,0.00072925835,0.00008569694,0.000098639845,0.0009031434,0.004921927,0.0045393603,0.012849121,0.00007666387,0.0006116977],"about_ca_topic_score_codex":0.000018902523,"about_ca_topic_score_gemma":0.000057542013,"teacher_disagreement_score":0.56584233,"about_ca_system_score_codex":0.000026913713,"about_ca_system_score_gemma":0.000018647219,"threshold_uncertainty_score":0.47273427},"labels":[],"label_agreement":null},{"id":"W2120527394","doi":"10.1093/sysbio/syp029","title":"Testing the Impact of Miniaturization on Phylogeny: Paleozoic Dissorophoid Amphibians","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Clade; Monophyly; Neoteny; Phylogenetic tree; Phylogenetics; Evolutionary biology; Taxon; Cladistics; Ecology; Zoology; Paleontology","score_opus":0.019485413663822317,"score_gpt":0.2636626564542406,"score_spread":0.24417724279041828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120527394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952937,0.00007441579,0.00018492088,0.000113851165,0.00009598666,0.00056199456,0.000006800675,0.000026859598,0.0036415043],"genre_scores_gemma":[0.99957085,0.0000022119025,0.00018477366,0.00013431067,0.000043983564,0.000013114265,0.0000058141495,0.0000053893673,0.00003957972],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99872774,0.000339914,0.00038942686,0.00023132835,0.00007815337,0.00023342448],"domain_scores_gemma":[0.99900246,0.00026319828,0.00030754574,0.00037036135,0.00001120151,0.000045225588],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035177873,0.00014690858,0.0003337385,0.0000300782,0.00008417107,0.0000064366964,0.0002652995,0.00013499352,0.00014655165],"category_scores_gemma":[0.00031253183,0.00006957762,0.00011658074,0.00020788092,0.00024070493,0.000018257399,0.000048167392,0.00008534173,0.00014171549],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030732477,0.00016530672,0.19506507,0.00032544677,0.000050925082,0.0000031369423,0.00077550486,0.0010839581,0.8001492,0.0010682861,0.0001385828,0.0011438272],"study_design_scores_gemma":[0.00027696046,0.0015885893,0.99145854,0.00046316773,0.00003225741,0.00005375617,0.00013865426,0.0015039863,0.0018356717,0.0024434905,0.0000050126896,0.00019989829],"about_ca_topic_score_codex":0.000071497314,"about_ca_topic_score_gemma":0.000008995051,"teacher_disagreement_score":0.79831356,"about_ca_system_score_codex":0.000068906615,"about_ca_system_score_gemma":0.000011932239,"threshold_uncertainty_score":0.28372929},"labels":[],"label_agreement":null},{"id":"W2125851760","doi":"10.1080/10635150701485091","title":"Summarizing a Posterior Distribution of Trees Using Agreement Subtrees","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Human Genome Research Institute; Medical Research Council; Canadian Institutes of Health Research; National Institutes of Health; University of Alberta","keywords":"Posterior probability; Phylogenetic tree; Tree (set theory); Bayesian probability; Inference; Bayesian inference; K-ary tree; Phylogenetics; Set (abstract data type); Statistics; Interval tree; Partition (number theory); Mathematics; Biology; Algorithm; Computer science; Tree structure; Binary tree; Combinatorics; Artificial intelligence","score_opus":0.020612560443936837,"score_gpt":0.2713218810077296,"score_spread":0.25070932056379275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125851760","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98690945,0.0024288914,0.009964593,0.00001627121,0.00018855513,0.00036097935,0.00003883246,0.000002353378,0.000090095906],"genre_scores_gemma":[0.99898195,0.000018312534,0.0008144498,0.0000231063,0.00007705056,0.000009919199,0.000051410025,0.000007521701,0.000016263737],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892545,0.00008767283,0.00049283344,0.00020958723,0.000056387205,0.00022808262],"domain_scores_gemma":[0.99931437,0.00003321973,0.00024841857,0.00026861657,0.00009706041,0.000038329476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059177895,0.00013160642,0.0003224984,0.00003488402,0.000055064396,0.000005919208,0.00013202883,0.00012374591,0.0000024346102],"category_scores_gemma":[0.00009618935,0.0001059461,0.000096134696,0.000056435398,0.00009497778,4.0281597e-7,0.0001564467,0.000030705836,0.0000015436915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031606578,0.00002565985,0.051310204,0.0011954141,0.00012862877,7.741447e-7,0.00008217707,0.000018649658,0.94677234,0.00032588292,0.0000044487347,0.000104202234],"study_design_scores_gemma":[0.0013831569,0.0013955279,0.19689777,0.001586978,0.0003317245,0.000117570075,0.0023299197,0.00048472165,0.79366297,0.0008542916,0.00022789181,0.00072745455],"about_ca_topic_score_codex":0.000059799502,"about_ca_topic_score_gemma":0.00018474166,"teacher_disagreement_score":0.15310936,"about_ca_system_score_codex":0.000018715977,"about_ca_system_score_gemma":0.000026228172,"threshold_uncertainty_score":0.43203565},"labels":[],"label_agreement":null},{"id":"W2126143182","doi":"10.1080/10635150601115640","title":"John N. Thompson, The Geographic Mosaic of Coevolution","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"History of Science and Medicine","field":"Arts and Humanities","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Mosaic; Coevolution; Biology; Evolutionary biology; Geography; Archaeology","score_opus":0.028994024486103522,"score_gpt":0.24807914018452298,"score_spread":0.21908511569841946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126143182","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89919734,0.007343011,0.00248336,0.0015257251,0.0038329547,0.0013248284,0.000013782023,0.00009090681,0.08418812],"genre_scores_gemma":[0.9986586,0.000005724527,0.000022337668,0.0002025786,0.00018302025,0.000010554713,0.0000028760016,0.000002552819,0.00091174815],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992198,0.000081895036,0.00035392106,0.00009141732,0.00009441799,0.00015854921],"domain_scores_gemma":[0.99937487,0.00014155863,0.00018372855,0.00018831914,0.000083033025,0.000028499318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016682696,0.00006246254,0.00022832278,0.00009851061,0.0001786773,0.0000059535637,0.00017285188,0.00003647916,0.00022154467],"category_scores_gemma":[0.0000827505,0.00003087903,0.00005419176,0.00004525574,0.00093442266,0.000031714073,0.000016920896,0.00006251792,0.000039854254],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011571409,0.000048488753,0.0021508213,0.005442777,0.000054362336,0.000002089259,0.043746307,0.0000010305843,0.0023578266,0.94425374,0.0016733749,0.0002576154],"study_design_scores_gemma":[0.0037863327,0.0040829023,0.024823904,0.020365966,0.0012429158,0.00026504762,0.39087027,0.0015149997,0.0015923862,0.07924017,0.47042742,0.0017876704],"about_ca_topic_score_codex":0.00018720221,"about_ca_topic_score_gemma":0.00052615674,"teacher_disagreement_score":0.86501354,"about_ca_system_score_codex":0.000013407336,"about_ca_system_score_gemma":0.000020346744,"threshold_uncertainty_score":0.34429193},"labels":[],"label_agreement":null},{"id":"W2127495923","doi":"10.1093/sysbio/syp060","title":"Radiation of Extant Cetaceans Driven by Restructuring of the Oceans","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Marine animal studies overview","field":"Environmental Science","cited_by":397,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; Northern Arizona University; Lundbeckfonden; Boise State University; Brown University","keywords":"Biology; Extant taxon; Adaptive radiation; Human echolocation; Lineage (genetic); Macroevolution; Porpoise; Cetacea; Ecology; Phylogenetics; Paleontology; Zoology; Evolutionary biology","score_opus":0.008652304922706485,"score_gpt":0.22289747405037752,"score_spread":0.21424516912767103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127495923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963711,0.00039434657,0.0001068919,0.00019008703,0.00005746579,0.00041655023,0.000005992138,0.0000069705156,0.0024506112],"genre_scores_gemma":[0.9997208,0.000029769346,0.0001373087,0.00006415235,0.0000059385134,0.0000040589866,8.187372e-7,0.0000023241037,0.00003482322],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991461,0.00016233324,0.00036959312,0.000117399955,0.00009556656,0.00010901458],"domain_scores_gemma":[0.9993735,0.00005099398,0.00030956013,0.00024444182,0.000005685859,0.000015839843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021041212,0.00007159221,0.00028278987,0.000008728985,0.000035880923,0.0000016143092,0.00024335795,0.000043012267,0.00014365737],"category_scores_gemma":[0.000101541285,0.000041466512,0.000058433805,0.000104896775,0.00010326851,0.00002155881,0.00014205332,0.00004249772,0.000008220498],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011921562,0.000075173964,0.9102582,0.00486493,0.00007564705,5.951247e-7,0.001332783,0.00025291723,0.07616122,0.004098418,0.00057160534,0.002296634],"study_design_scores_gemma":[0.00027657876,0.00023186408,0.9867054,0.00071452576,0.00007051943,0.00000854508,0.00021893345,0.00092601735,0.007980468,0.0025890826,0.0001350165,0.00014303725],"about_ca_topic_score_codex":0.00015749213,"about_ca_topic_score_gemma":0.000058987764,"teacher_disagreement_score":0.076447256,"about_ca_system_score_codex":0.000043316984,"about_ca_system_score_gemma":0.0000031563739,"threshold_uncertainty_score":0.16909553},"labels":[],"label_agreement":null},{"id":"W2128252278","doi":"10.1080/10635150500354928","title":"Inferring Phylogeny Despite Incomplete Lineage Sorting","year":2006,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1179,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetics; Evolutionary biology; Lineage (genetic); Coalescent theory; Sorting; Zoology; Genetics; Algorithm; Computer science; Gene","score_opus":0.012761214021353053,"score_gpt":0.23968692650241233,"score_spread":0.22692571248105928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128252278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849102,0.00048919785,0.012828516,0.000025586061,0.00023399982,0.00030735458,0.000013176991,0.00002411417,0.001167835],"genre_scores_gemma":[0.99717873,0.0000023811745,0.0020825772,0.00015352425,0.00026303105,0.000015418958,0.0001296344,0.000010020666,0.00016465185],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988948,0.00015957576,0.00039617883,0.00026240983,0.00006352374,0.00022350338],"domain_scores_gemma":[0.9993537,0.000018354309,0.00021718781,0.00030515905,0.00006617146,0.000039414263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024141045,0.00014534523,0.0002566939,0.00005217052,0.00010956337,0.000022466078,0.00018640967,0.00020458213,0.000022559407],"category_scores_gemma":[0.00007784044,0.00012582906,0.000094631265,0.000066496774,0.00005875503,0.000001811068,0.00016856805,0.00006822133,0.000029065812],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018810184,0.000028645643,0.24196127,0.0033227063,0.00010802307,0.0000042892543,0.000103093334,0.0014270047,0.74674284,0.006051438,0.000156536,0.000075335076],"study_design_scores_gemma":[0.0050807497,0.001171544,0.5846574,0.0024827253,0.00055968284,0.00045293252,0.0012136986,0.0051649977,0.36753964,0.023030786,0.005443621,0.0032022672],"about_ca_topic_score_codex":0.00006378075,"about_ca_topic_score_gemma":0.000050830356,"teacher_disagreement_score":0.3792032,"about_ca_system_score_codex":0.000008561736,"about_ca_system_score_gemma":0.000020444842,"threshold_uncertainty_score":0.513116},"labels":[],"label_agreement":null},{"id":"W2129628333","doi":"10.1080/10635150701494127","title":"Diversity, Nomenclature, and Taxonomy of Protists","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":295,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Dalhousie University","funders":"","keywords":"Biology; Platypus; Phylogenetic tree; Nomenclature; Evolutionary biology; Indel; Sister group; Taxonomy (biology); Genome; Genetics; Phylogenetic nomenclature; Zoology; Gene; Single-nucleotide polymorphism; Clade; Genotype","score_opus":0.020248146551321036,"score_gpt":0.2353031053668116,"score_spread":0.21505495881549055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129628333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98682195,0.00080386805,0.010515217,0.000013279508,0.00009411032,0.0008099504,0.000013956041,0.00000553638,0.000922163],"genre_scores_gemma":[0.99861073,0.000008374836,0.0012064672,0.000055296645,0.000036215355,0.000014465425,0.000012983548,0.0000029965215,0.000052445088],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993749,0.000067191046,0.00019228992,0.00017713831,0.000042303254,0.00014616453],"domain_scores_gemma":[0.99955386,0.00002201151,0.0001340511,0.00018850648,0.00005109049,0.000050506642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047141875,0.00008529163,0.00021194077,0.000043236014,0.00011772511,0.000002726968,0.00015956382,0.00016649388,0.0000055177425],"category_scores_gemma":[0.00005878946,0.00007318895,0.000043241056,0.000042539774,0.00013803077,0.0000015258057,0.00085789553,0.00004772275,0.000002794039],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008152083,0.000054228858,0.881325,0.0078504905,0.00017867266,0.0000050436583,0.00027793561,5.6117875e-7,0.10198231,0.008061663,0.000053100157,0.00012946091],"study_design_scores_gemma":[0.0036405998,0.0026372168,0.6530731,0.0018294613,0.0003379718,0.000314812,0.0011123064,0.000033833836,0.32167542,0.013167354,0.00091438706,0.0012635643],"about_ca_topic_score_codex":0.000025731177,"about_ca_topic_score_gemma":0.000022178692,"teacher_disagreement_score":0.22825195,"about_ca_system_score_codex":0.0000058523633,"about_ca_system_score_gemma":0.000014297682,"threshold_uncertainty_score":0.2984559},"labels":[],"label_agreement":null},{"id":"W2129682738","doi":"10.1080/10635150601052637","title":"Phylogenomic Analysis of the L1 Retrotransposons in Deuterostomia","year":2006,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Joint Genome Institute; Macquarie University; U.S. Department of Energy","keywords":"Retrotransposon; Biology; Genome; Evolutionary biology; Lineage (genetic); Genome evolution; Genetics; Transposable element; Gene","score_opus":0.009253429812932002,"score_gpt":0.19702735464810534,"score_spread":0.18777392483517333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129682738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99883735,0.00017079826,0.000014333862,0.00034350288,0.000063352345,0.00029161057,0.000062981184,0.000007719691,0.00020833254],"genre_scores_gemma":[0.9998337,0.0000012644546,0.000033580487,0.000029454332,0.000026124455,0.000027490261,0.000022851906,2.508385e-7,0.000025250769],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991334,0.00020472263,0.00035942934,0.0001335128,0.000047378504,0.000121524325],"domain_scores_gemma":[0.99960864,0.00013392085,0.00013825213,0.000082927465,0.000024035437,0.000012227637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018050567,0.00006622317,0.00031067643,0.000024206369,0.000045773486,0.000006310187,0.00021358678,0.000077852455,0.00006922477],"category_scores_gemma":[0.000021791722,0.000019043626,0.000163985,0.0007396034,0.000049058286,0.000008034332,0.00003362557,0.00004174928,0.000004474744],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000024022522,0.000038222726,0.5417604,0.00015390673,0.00007972457,2.2125651e-7,0.00005950673,0.00018832415,0.4541699,0.0035108977,0.0000015441972,0.000034940425],"study_design_scores_gemma":[0.000055082553,0.000026681893,0.99577975,0.0000823006,0.00015831758,0.0000011703958,0.000038623097,0.00054018694,0.0012870289,0.0019720108,0.000008756512,0.000050081653],"about_ca_topic_score_codex":0.0008538222,"about_ca_topic_score_gemma":0.008545161,"teacher_disagreement_score":0.45401934,"about_ca_system_score_codex":0.000016045135,"about_ca_system_score_gemma":0.0000048220754,"threshold_uncertainty_score":0.47684005},"labels":[],"label_agreement":null},{"id":"W2129993431","doi":"10.1093/sysbio/syr088","title":"Biogeography Revisited with Network Theory: Retracing the History of Hydrothermal Vent Communities","year":2011,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Agence Nationale de la Recherche","keywords":"Biogeography; Ecology; Biology; Ecosystem; Biodiversity; Hydrothermal vent; Identification (biology); Paleontology; Hydrothermal circulation","score_opus":0.038065729652436986,"score_gpt":0.19835367049498323,"score_spread":0.16028794084254624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129993431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.76074815,0.12532924,0.0014717489,0.00013113028,0.0014338756,0.0013669047,0.000039218605,0.00011267203,0.10936709],"genre_scores_gemma":[0.99946344,0.00004869186,0.00019935067,0.00019235203,0.000025581488,0.0000067615533,0.000007835523,0.0000016514612,0.000054355263],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99820215,0.0011991448,0.00028376494,0.00008143058,0.000055422643,0.00017807547],"domain_scores_gemma":[0.99895823,0.00044283518,0.00025133605,0.00028471227,0.000040043942,0.000022834092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010847636,0.000099937104,0.00033989392,0.000050934083,0.000121261015,0.000002230955,0.00022724514,0.0000682798,0.00046256807],"category_scores_gemma":[0.00002265648,0.0000484678,0.000058934427,0.000103780396,0.000750103,0.000023366825,0.000011704968,0.0001134995,0.000016909693],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053086966,0.000006672921,0.9832383,0.0012194949,0.0001873145,0.0000011688296,0.0055285813,0.000019676121,0.0000014825966,0.009589056,0.00010918645,0.0000459873],"study_design_scores_gemma":[0.00032817287,0.00068240694,0.97436136,0.0026466004,0.00025691674,0.00007323646,0.010757512,0.0010931895,0.000006947474,0.009244023,0.00028749963,0.00026211402],"about_ca_topic_score_codex":0.0012344026,"about_ca_topic_score_gemma":0.0068372292,"teacher_disagreement_score":0.2387153,"about_ca_system_score_codex":0.0000040838745,"about_ca_system_score_gemma":0.000020873083,"threshold_uncertainty_score":0.50647956},"labels":[],"label_agreement":null},{"id":"W2130528349","doi":"10.1093/sysbio/syr008","title":"Five Statistical Questions about the Tree of Life","year":2011,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"National Science Foundation","keywords":"Extant taxon; Biology; Clade; Taxon; Extinction (optical mineralogy); Genetic algorithm; Evolutionary biology; Tree (set theory); Tree of life (biology); Diversity (politics); Ecology; Phylogenetics; Paleontology; Mathematics; Sociology; Combinatorics","score_opus":0.048743034575307084,"score_gpt":0.25933214324830206,"score_spread":0.21058910867299496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130528349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7568011,0.024052918,0.022725297,0.0012449847,0.0022331912,0.0018460015,0.00052336487,0.00013701052,0.1904361],"genre_scores_gemma":[0.9988268,0.000019996542,0.0009188565,0.00013244948,0.000019784517,0.000006139713,0.000008841839,6.40375e-7,0.000066477056],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989392,0.0004717145,0.00031610037,0.000097464545,0.00004428812,0.00013120653],"domain_scores_gemma":[0.9989933,0.0006372334,0.00012973504,0.00015520894,0.000041817966,0.000042730164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036800344,0.000065821834,0.00027111324,0.000028172528,0.00009508535,0.0000024890587,0.00014971389,0.00006313527,0.00066103536],"category_scores_gemma":[0.00049451535,0.000032973738,0.000033693374,0.000057254707,0.00041423668,0.000015002418,0.000008900329,0.00006678737,0.00017868236],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012259906,0.0000103338725,0.9499593,0.0010057152,0.00008632205,0.0000010382018,0.0016399107,0.0000041213043,0.0000018313008,0.046926,0.0002286564,0.00012451738],"study_design_scores_gemma":[0.00008014381,0.00009804451,0.99108434,0.000116751165,0.00003793157,0.000008362229,0.0010849875,0.00088722614,0.0000012402091,0.0065413807,0.0000134223155,0.000046167497],"about_ca_topic_score_codex":0.0017884751,"about_ca_topic_score_gemma":0.022622263,"teacher_disagreement_score":0.24202569,"about_ca_system_score_codex":9.168652e-7,"about_ca_system_score_gemma":0.000029150551,"threshold_uncertainty_score":0.9952123},"labels":[],"label_agreement":null},{"id":"W2131013059","doi":"10.1093/sysbio/syp067","title":"Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":608,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Phylogenetic tree; Extinction (optical mineralogy); Genetic algorithm; Evolutionary biology; Clade; Phylogenetics; Trait; Ecology; Genetics; Paleontology; Gene","score_opus":0.03068396282788293,"score_gpt":0.25596180989268125,"score_spread":0.2252778470647983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131013059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875703,0.0036813116,0.005263071,0.00046657168,0.0004960105,0.00034738408,0.000044334334,0.00006456475,0.002066485],"genre_scores_gemma":[0.9954894,0.000012099005,0.0040835463,0.00018306599,0.00015191876,0.000003038091,0.000061663355,0.0000010263991,0.000014203166],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988304,0.00033172016,0.00036966952,0.00022456105,0.00006919724,0.00017445366],"domain_scores_gemma":[0.99923664,0.00038169845,0.00019657097,0.00010945477,0.000032746917,0.00004288994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036435502,0.000120218414,0.0003449809,0.000059990918,0.0001985266,0.000027785263,0.00008094143,0.00010117663,0.00015581585],"category_scores_gemma":[0.00021158921,0.00008706811,0.000030914278,0.0000587934,0.00008146766,0.000060208804,0.00000722668,0.00008197631,0.000046317175],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036792164,0.000013683274,0.9907806,0.0006204957,0.00008744017,0.0000038259077,0.001485769,0.0002242566,0.0009899521,0.00044020984,0.000039585866,0.0052773873],"study_design_scores_gemma":[0.00022692617,0.00014265938,0.96553355,0.0001729124,0.00003345831,0.00001693522,0.0005958803,0.021826487,0.00002462562,0.01131003,0.00000677988,0.000109745786],"about_ca_topic_score_codex":0.00050263025,"about_ca_topic_score_gemma":0.007719092,"teacher_disagreement_score":0.025247041,"about_ca_system_score_codex":0.0000046610044,"about_ca_system_score_gemma":0.000009409803,"threshold_uncertainty_score":0.43074346},"labels":[],"label_agreement":null},{"id":"W2133451796","doi":"10.1080/10635150290102537","title":"Is Cladogenesis Heritable?","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of New Brunswick","funders":"","keywords":"Cladogenesis; Biology; Phylogenetic tree; Evolutionary biology; Heritability; Macroevolution; Clade; Phylogenetics; Genetics; Gene","score_opus":0.0598982686340522,"score_gpt":0.23646919631245078,"score_spread":0.17657092767839858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133451796","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.74108183,0.071032226,0.0008373527,0.004272749,0.0018651669,0.00095699227,0.00009430541,0.00024844272,0.17961094],"genre_scores_gemma":[0.9981004,0.000081493075,0.00033100767,0.00076220446,0.000042745032,0.000005038297,0.000004339247,0.0000011091201,0.00067164394],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990676,0.00022450388,0.00025925858,0.00017239821,0.00005249979,0.00022371144],"domain_scores_gemma":[0.999493,0.00016804284,0.00008231235,0.00017883218,0.000026832848,0.000050951952],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019508113,0.00009625032,0.00030549234,0.00004563835,0.00013120275,0.0000097968605,0.00013528159,0.00010366698,0.0058875503],"category_scores_gemma":[0.00006628597,0.000065017484,0.0000567459,0.00010069587,0.00010880351,0.000030700976,0.0000078685125,0.000054189924,0.002621414],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000001433534,0.0000058192945,0.9963872,0.001406488,0.00005632552,0.000002314395,0.0003883369,0.000004867118,0.0000088686265,0.00036998346,0.0011695996,0.000198798],"study_design_scores_gemma":[0.00049383164,0.00024732578,0.96830845,0.00059749256,0.00011789015,0.00017067621,0.0015058831,0.023050103,0.00003322187,0.0035800356,0.0014200177,0.00047505606],"about_ca_topic_score_codex":0.00022487668,"about_ca_topic_score_gemma":0.0030350098,"teacher_disagreement_score":0.2570186,"about_ca_system_score_codex":0.0000018909932,"about_ca_system_score_gemma":0.0000035723492,"threshold_uncertainty_score":0.9981552},"labels":[],"label_agreement":null},{"id":"W2134586893","doi":"10.1093/sysbio/sys077","title":"Serine Codon-Usage Bias in Deep Phylogenomics: Pancrustacean Relationships as a Case Study","year":2012,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":162,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Serine; Amino acid; Biology; Codon usage bias; Phylogenetic tree; Genetics; Nucleotide; Synonymous substitution; Threonine; Leucine; Gene; Computational biology; Genome; Phosphorylation","score_opus":0.060233711874331054,"score_gpt":0.2952052328626298,"score_spread":0.23497152098829874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134586893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99146134,0.0060148486,0.00025004728,0.000027520355,0.00031720323,0.0014459669,0.000014135451,0.000007611651,0.00046135113],"genre_scores_gemma":[0.9988844,0.00006498579,0.0004254947,0.0000661205,0.00018662224,0.0002550878,0.00001678663,0.0000269259,0.00007361157],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975478,0.0009198223,0.0006595552,0.0003617636,0.00006023583,0.00045082544],"domain_scores_gemma":[0.99889266,0.00012802193,0.00022969976,0.00057242194,0.00006211529,0.00011509011],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015446891,0.00025624014,0.00050785684,0.00008488715,0.0001328994,0.00001686036,0.0001840036,0.00021239788,0.000007689261],"category_scores_gemma":[0.000418015,0.0002152345,0.000089619316,0.00010401516,0.000075861375,0.0000015444241,0.00027266674,0.0001592854,0.000033832726],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055389024,0.0005816266,0.93670577,0.0016141655,0.00043913626,0.00014094303,0.006099141,0.00012243618,0.05313965,0.0009813749,0.000020261341,0.00010011075],"study_design_scores_gemma":[0.021859884,0.012288773,0.4772697,0.0017615914,0.0021807621,0.033738498,0.40333912,0.0023214438,0.02747982,0.005348927,0.0044029504,0.008008518],"about_ca_topic_score_codex":0.00041673766,"about_ca_topic_score_gemma":0.0011789901,"teacher_disagreement_score":0.45943603,"about_ca_system_score_codex":0.000035037614,"about_ca_system_score_gemma":0.000034808687,"threshold_uncertainty_score":0.8777008},"labels":[],"label_agreement":null},{"id":"W2135355813","doi":"10.1080/10635150490503026","title":"The Phylogenetic Definition of Reptilia","year":2004,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Paleontology and Evolutionary Biology","field":"Earth and Planetary Sciences","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cape Breton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Evolutionary biology; Zoology; Genetics","score_opus":0.02211477123305265,"score_gpt":0.21942143900688588,"score_spread":0.19730666777383324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135355813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98709476,0.0059254295,0.00068119564,0.00032409572,0.0004514295,0.00026709057,0.000017487095,0.000018432802,0.0052201003],"genre_scores_gemma":[0.9990932,0.000050746876,0.0007463442,0.000050383755,0.000024416233,0.000005461235,0.000021847492,6.568134e-7,0.0000069692974],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990405,0.0002905449,0.0003281429,0.00012415095,0.000038585622,0.00017812065],"domain_scores_gemma":[0.99923617,0.00034720977,0.0001596275,0.00019832453,0.000031966454,0.000026691794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047177638,0.00006856407,0.00020679503,0.000028650502,0.00014168164,0.000002912522,0.00017957315,0.000118921766,0.00006639173],"category_scores_gemma":[0.00017211871,0.000036933492,0.000047655572,0.000071956594,0.0003870586,0.000015016237,0.0000074222294,0.00006322087,0.0001681691],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005461894,0.000018699517,0.9140125,0.0017278731,0.00009412716,0.0000041323274,0.00019930316,0.00034201134,0.001160683,0.08195403,0.000009502273,0.00042254938],"study_design_scores_gemma":[0.00023078022,0.00026157295,0.7189047,0.00019889322,0.000026328804,0.000118429896,0.00018979705,0.00017761443,0.00012959889,0.27967638,0.000008403354,0.00007752124],"about_ca_topic_score_codex":0.00017659602,"about_ca_topic_score_gemma":0.0018262183,"teacher_disagreement_score":0.19772236,"about_ca_system_score_codex":0.0000027354197,"about_ca_system_score_gemma":0.000038083283,"threshold_uncertainty_score":0.21615297},"labels":[],"label_agreement":null},{"id":"W2135503985","doi":"10.1080/10635150601167005","title":"A Step Toward Barcoding Life: A Model-Based, Decision-Theoretic Method to Assign Genes to Preexisting Species Groups","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Center for Research Resources; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Genome Canada","keywords":"Coalescent theory; Sequence (biology); Biology; Task (project management); DNA barcoding; Group (periodic table); Simple (philosophy); Machine learning; Computer science; Artificial intelligence; Evolutionary biology; Data mining; Gene; Genetics; Phylogenetics","score_opus":0.03705533115824887,"score_gpt":0.3121487660582207,"score_spread":0.2750934348999718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135503985","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32626733,0.0014094076,0.6706332,0.00016261837,0.00020859399,0.0008758447,0.000026796435,0.000011176682,0.00040503975],"genre_scores_gemma":[0.7238115,0.000012104285,0.27504763,0.0006975503,0.00020067302,0.00013885507,0.000009353179,0.000028919363,0.000053410917],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99747044,0.0002821912,0.00079819927,0.00069413934,0.0001548317,0.00060019596],"domain_scores_gemma":[0.99823064,0.0004471311,0.00019125036,0.00061623054,0.00019761585,0.0003171288],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0023952504,0.00033934586,0.0006637278,0.00017504576,0.00015876774,0.00004358688,0.00048930926,0.00023832524,0.000011447679],"category_scores_gemma":[0.0012387357,0.000274916,0.00017384643,0.00019851487,0.00006455862,8.784865e-7,0.00048425287,0.00008962213,0.000035101006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028008907,0.00006528913,0.0044370987,0.0030768616,0.0002621481,0.0000070801566,0.00073388655,0.014553219,0.9629632,0.010596771,0.00018321855,0.0028411194],"study_design_scores_gemma":[0.006498811,0.010165802,0.011301498,0.010681683,0.0014339664,0.00035248895,0.012999548,0.14901148,0.73897374,0.043761913,0.0066473945,0.00817169],"about_ca_topic_score_codex":0.000012686672,"about_ca_topic_score_gemma":0.000037943202,"teacher_disagreement_score":0.39754418,"about_ca_system_score_codex":0.000043052354,"about_ca_system_score_gemma":0.00010159258,"threshold_uncertainty_score":0.9999703},"labels":[],"label_agreement":null},{"id":"W2137076742","doi":"10.1080/10635150801910436","title":"Testing Congruence in Phylogenomic Analysis","year":2008,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":204,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Auckland; Canadian Institute for Advanced Research; Alfred P. Sloan Foundation; Nova Scotia Health Research Foundation; Allan Wilson Centre","keywords":"Biology; Phylogenetic tree; Phylogenetics; Phylogenomics; Evolutionary biology; Eukaryote; Genome; Congruence (geometry); Phylogenetic network; Set (abstract data type); Tree (set theory); Phylogenetic comparative methods; Computational biology; Gene; Genetics; Clade; Computer science; Mathematics","score_opus":0.026140911045676857,"score_gpt":0.2501323611668033,"score_spread":0.22399145012112645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137076742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961031,0.0023565295,0.0005934099,0.00002011583,0.00009056032,0.00031207822,0.000009424082,0.000004054378,0.0005107027],"genre_scores_gemma":[0.99837476,0.000040112915,0.0013143087,0.000086906766,0.000051853134,0.000075949065,0.000012522422,0.000008516949,0.000035087036],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988064,0.00015580666,0.00041037123,0.00033873043,0.000039954753,0.00024873196],"domain_scores_gemma":[0.9993383,0.00005658133,0.0001423182,0.00035442034,0.00006799281,0.00004034092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028568477,0.0001443185,0.0004469189,0.00012232798,0.0000730503,0.000005028008,0.00020268286,0.00011974923,0.0000037288216],"category_scores_gemma":[0.0002611274,0.00012176867,0.000104306564,0.00029906147,0.00012911929,2.9705694e-7,0.00013538018,0.000052584266,0.000010926733],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000055093433,0.000018103518,0.5440593,0.0003457525,0.00028022824,0.0000048369993,0.00011163622,0.00040150777,0.45465496,0.00009909982,0.0000040079576,0.000015059248],"study_design_scores_gemma":[0.000810529,0.00040223158,0.9793043,0.00018719406,0.00033190043,0.00014576256,0.0003321269,0.0015596054,0.015543781,0.0007281,0.000054888882,0.0005995592],"about_ca_topic_score_codex":0.00011797284,"about_ca_topic_score_gemma":0.00011303042,"teacher_disagreement_score":0.43911117,"about_ca_system_score_codex":0.000014839297,"about_ca_system_score_gemma":0.00004884833,"threshold_uncertainty_score":0.49655825},"labels":[],"label_agreement":null},{"id":"W2138279211","doi":"10.1093/sysbio/syt031","title":"Morphology and Evolution of Turtles: Proceedings of the Gaffney Turtle Symposium 2009. Edited by Donald B. Brinkman, Patricia A. Holroyd, and James D. Gardner.","year":2013,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Turtle Biology and Conservation","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Morphology (biology); Turtle (robot); Evolutionary biology; Zoology; Ecology","score_opus":0.00385895444011374,"score_gpt":0.1791498148028886,"score_spread":0.17529086036277486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138279211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996559,0.0007703239,0.000066024026,0.0013682514,0.00013855867,0.00069366867,0.000018481418,0.00001281566,0.00037287085],"genre_scores_gemma":[0.9994419,0.000027157948,0.00009089757,0.00015779704,0.000019042092,0.00006390831,0.000004178556,0.0000050548465,0.00019001428],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99898857,0.00011652333,0.0004087402,0.00024056082,0.000080123886,0.00016550755],"domain_scores_gemma":[0.99929655,0.000100379904,0.00038919548,0.0001331918,0.00004255276,0.000038162274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031609318,0.00012439865,0.00033170276,0.000035354315,0.000059131078,0.000007783663,0.00017518827,0.00023236826,0.00007345332],"category_scores_gemma":[0.00011500002,0.000075882344,0.00003601537,0.00013806853,0.00063526834,0.00008782406,0.00019138814,0.00009542329,0.000015243584],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010424128,0.000035450725,0.6197321,0.0011334098,0.000031859352,8.7666486e-8,0.00036758915,0.0000028370655,0.37118334,0.00059142825,0.0068732733,0.00003822186],"study_design_scores_gemma":[0.00076702534,0.00037562754,0.974427,0.00065950124,0.00014859649,0.00011214542,0.0012612476,0.0013170653,0.013213455,0.0072518326,0.0001852907,0.00028122554],"about_ca_topic_score_codex":0.00070751883,"about_ca_topic_score_gemma":0.000018039515,"teacher_disagreement_score":0.35796988,"about_ca_system_score_codex":0.000033064578,"about_ca_system_score_gemma":0.0000076626075,"threshold_uncertainty_score":0.3094392},"labels":[],"label_agreement":null},{"id":"W2138798117","doi":"10.1080/10635150252899734","title":"A Statistical Test for Host–Parasite Coevolution","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":534,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Coevolution; Host (biology); Biology; Parasite hosting; Type I and type II errors; Phylogenetic tree; Statistical hypothesis testing; Evolutionary biology; Statistics; Ecology; Genetics; Mathematics; Computer science","score_opus":0.013822257587474397,"score_gpt":0.27374087268720365,"score_spread":0.25991861509972924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138798117","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17614748,0.0027487632,0.81709194,0.000359454,0.00042402727,0.0017121837,0.0003440832,0.000050688446,0.0011213814],"genre_scores_gemma":[0.9923856,0.000031985506,0.0060324124,0.00021769229,0.000117083844,0.00020157582,0.00018175309,0.0000144442065,0.00081742986],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99893117,0.00011932013,0.0003477619,0.0002912542,0.000052609186,0.00025790013],"domain_scores_gemma":[0.99929446,0.000111371795,0.00011587111,0.00030846565,0.00009526821,0.000074537915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024397262,0.00013612882,0.00025159327,0.000036723577,0.00007739062,0.000012318187,0.00013682262,0.00020601439,0.00004536587],"category_scores_gemma":[0.0007697935,0.00011572042,0.00007602888,0.000048647158,0.000108801985,0.0000011722907,0.000051027157,0.000048897855,0.00007867614],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001097168,0.00079753227,0.063137226,0.01878057,0.0004522248,0.0000047158037,0.00032285898,0.0002242409,0.8279326,0.06484996,0.02298533,0.0004030102],"study_design_scores_gemma":[0.013297809,0.013623497,0.073525,0.002724429,0.001091888,0.0010212865,0.00116178,0.83622885,0.015453309,0.018550804,0.018856931,0.0044644005],"about_ca_topic_score_codex":0.0000043816067,"about_ca_topic_score_gemma":0.00002207647,"teacher_disagreement_score":0.8360046,"about_ca_system_score_codex":0.000017805847,"about_ca_system_score_gemma":0.000016327953,"threshold_uncertainty_score":0.47189417},"labels":[],"label_agreement":null},{"id":"W2139759656","doi":"10.1080/10635150802426473","title":"A Comparative Study in Ancestral Range Reconstruction Methods: Retracing the Uncertain Histories of Insular Lineages","year":2008,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Vicariance; Biological dispersal; Biology; Range (aeronautics); Cladogenesis; Lineage (genetic); Context (archaeology); Paleontology; Evolutionary biology; Phylogenetics; Clade; Population","score_opus":0.09194497609525268,"score_gpt":0.34708870589351787,"score_spread":0.25514372979826516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139759656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99439645,0.0023701228,0.0019193939,0.000034101256,0.000295789,0.0006757834,0.0000138836795,0.0000066748353,0.00028777658],"genre_scores_gemma":[0.9978624,0.00004450894,0.0018778997,0.000011563556,0.000057978014,0.00008234911,0.000013864188,0.0000036786191,0.000045738427],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983451,0.00085181557,0.0004416349,0.00018436492,0.00004831251,0.00012882083],"domain_scores_gemma":[0.9993877,0.0000928007,0.00021014737,0.00022947136,0.00006161741,0.000018270968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062835787,0.000107089734,0.0004068303,0.000053572126,0.00008224543,0.0000041223752,0.00015014935,0.00010840299,0.000004351683],"category_scores_gemma":[0.00015374989,0.00006943705,0.00005832084,0.00013139019,0.00022407412,0.000003988273,0.000042218686,0.00010721132,9.425545e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019039554,0.00027842334,0.3137833,0.0016990377,0.00032103577,0.000012415188,0.01092719,0.00012965288,0.67143804,0.0009947175,0.00007869026,0.00014715114],"study_design_scores_gemma":[0.011702243,0.011741688,0.44394836,0.004862996,0.00093109184,0.004487161,0.21233925,0.006828528,0.29410627,0.0036643161,0.0020798082,0.0033083018],"about_ca_topic_score_codex":0.00009102778,"about_ca_topic_score_gemma":0.00029560048,"teacher_disagreement_score":0.37733176,"about_ca_system_score_codex":0.000027529657,"about_ca_system_score_gemma":0.000040005572,"threshold_uncertainty_score":0.28315607},"labels":[],"label_agreement":null},{"id":"W2139771752","doi":"10.1080/10635150701420643","title":"Inferring Speciation Times under an Episodic Molecular Clock","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":495,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Human Genome Research Institute; Natural Environment Research Council; Canadian Institutes of Health Research; National Institutes of Health; National Science Foundation","keywords":"Divergence (linguistics); Statistics; Bayesian probability; Markov chain Monte Carlo; Biology; Posterior probability; Sampling (signal processing); Bayes' theorem; Sequence (biology); Mathematics; Algorithm; Computer science; Filter (signal processing); Genetics","score_opus":0.02150492562701795,"score_gpt":0.26769647464059876,"score_spread":0.2461915490135808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139771752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94927174,0.0037486837,0.021414,0.00021581199,0.0005662986,0.00034855705,0.0000059134213,0.00008395691,0.024345027],"genre_scores_gemma":[0.998838,0.000007548997,0.0006565329,0.00032961776,0.00007091756,0.0000015773171,0.00002943713,0.0000015906186,0.00006479563],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99887156,0.0002647422,0.00034786118,0.00018223282,0.00007520108,0.0002583722],"domain_scores_gemma":[0.9993612,0.0002242967,0.00013428205,0.00017066562,0.000038562634,0.00007094891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008683142,0.00010440856,0.0002736553,0.00009585352,0.000117375705,0.000012572637,0.00012124133,0.00012623645,0.00034552248],"category_scores_gemma":[0.00009959488,0.000076507815,0.000041356623,0.00010269597,0.000092787624,0.00005817778,0.000008877444,0.000083992396,0.00033727183],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007524763,0.0000086238615,0.9722799,0.0006314646,0.000052680505,0.0000066806247,0.00026688303,0.00027355642,0.00011018029,0.026122086,0.000013216358,0.00022719087],"study_design_scores_gemma":[0.00017285859,0.00012614307,0.98566973,0.00015050403,0.00003179867,0.000035517543,0.0009781752,0.0024257605,0.0000613781,0.0101576075,0.000039210932,0.00015133723],"about_ca_topic_score_codex":0.0003162536,"about_ca_topic_score_gemma":0.014984269,"teacher_disagreement_score":0.04956623,"about_ca_system_score_codex":0.0000061398596,"about_ca_system_score_gemma":0.00001473911,"threshold_uncertainty_score":0.8361573},"labels":[],"label_agreement":null},{"id":"W2140000899","doi":"10.1093/sysbio/52.6.865","title":"Matrix Representations with Parsimony or with Distances:Two Sides of the Same Coin?","year":2003,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal; Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Matrix (chemical analysis); Maximum parsimony; Evolutionary biology; Mathematics; Paleontology; Phylogenetics; Genetics","score_opus":0.025787847506776995,"score_gpt":0.27358221756660006,"score_spread":0.24779437005982308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140000899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97416013,0.0038448572,0.0018618546,0.00060601794,0.00030270524,0.001103841,0.00006956671,0.00003797709,0.01801307],"genre_scores_gemma":[0.9981875,0.00001115792,0.001221678,0.000071548464,0.00000877339,0.000011518467,0.0000048152965,0.0000014417523,0.00048155859],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99877846,0.00052819535,0.00027923853,0.00016022986,0.000089807865,0.00016407431],"domain_scores_gemma":[0.9988595,0.0005460079,0.00024108044,0.0002643433,0.00005777913,0.000031270793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026521322,0.00010035944,0.00033221854,0.000028745631,0.0001572192,0.000007578271,0.00014062275,0.000040468236,0.00018968519],"category_scores_gemma":[0.00016854744,0.00003888954,0.000031799438,0.00021269689,0.00045914063,0.000033066306,0.0000051992542,0.00006556887,0.000018834442],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040197472,0.000007762016,0.9932753,0.00095667236,0.000088354434,0.000002463044,0.0004095046,0.00032067206,0.000004818251,0.004854747,0.000033919485,0.0000055976097],"study_design_scores_gemma":[0.0010905534,0.0005590609,0.9800435,0.0013455417,0.00021983558,0.00027885532,0.011846921,0.0006323666,0.00007761418,0.0035267242,0.00013058279,0.0002484695],"about_ca_topic_score_codex":0.0005961245,"about_ca_topic_score_gemma":0.13131459,"teacher_disagreement_score":0.13071847,"about_ca_system_score_codex":0.0000024251522,"about_ca_system_score_gemma":0.00006236305,"threshold_uncertainty_score":0.8845367},"labels":[],"label_agreement":null},{"id":"W2140148710","doi":"10.1093/sysbio/syp020","title":"The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":664,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brandon University; Victoria Park; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Ascomycota; Phylogenetics; Phylum; Phylogenetic tree; Evolutionary biology; Ascus (bryozoa); Botany; Maximum parsimony; Gene; Clade; Genetics; Ascospore; Spore","score_opus":0.016888322200110568,"score_gpt":0.22382727824784532,"score_spread":0.20693895604773474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140148710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99317396,0.0027923384,0.000005122738,0.0030981998,0.00008554825,0.0006287829,0.000013841943,0.000011154819,0.00019108114],"genre_scores_gemma":[0.99965864,0.000048439782,0.00003399331,0.00013224616,0.00006930199,0.000028015202,0.000002305867,3.9773715e-7,0.00002666875],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99849933,0.00057955383,0.00042579146,0.00024703826,0.00006495441,0.00018335035],"domain_scores_gemma":[0.99828804,0.0012373746,0.00029269035,0.0000869001,0.000055667326,0.000039311744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009180099,0.000111587884,0.00041047196,0.0000093904655,0.00019198481,0.000014597264,0.00019823022,0.00015341163,0.000011107195],"category_scores_gemma":[0.00064942543,0.000028723754,0.00005941492,0.00012594259,0.0005176085,0.000027654725,0.000074262534,0.00011477948,0.0000012973738],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023981495,0.00031219106,0.3732982,0.0009593735,0.00024351942,0.0000013449625,0.0013235741,0.000001300131,0.49612784,0.12271137,0.00015884532,0.004622624],"study_design_scores_gemma":[0.0001402605,0.00097570906,0.98288137,0.000056041044,0.00003281701,0.000017424665,0.0021416137,0.000039124403,0.0002791723,0.013332431,0.000037662106,0.00006636891],"about_ca_topic_score_codex":0.00007207791,"about_ca_topic_score_gemma":0.00033727387,"teacher_disagreement_score":0.6095832,"about_ca_system_score_codex":0.000016835134,"about_ca_system_score_gemma":0.000013007622,"threshold_uncertainty_score":0.19071501},"labels":[],"label_agreement":null},{"id":"W2140928477","doi":"10.1080/10635150490468756","title":"Phylogenetic Artifacts Can be Caused by Leucine, Serine, and Arginine Codon Usage Heterogeneity: Dinoflagellate Plastid Origins as a Case Study","year":2004,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Atlantic; Canadian Institutes of Health Research; Dalhousie University","keywords":"Peridinin; Plastid; Haptophyte; Biology; Dinoflagellate; Phylogenetic tree; Genetics; Codon usage bias; Phylogenetics; Gene; Phylogenetic network; Evolutionary biology; Genome; Botany; Algae","score_opus":0.01815929003544353,"score_gpt":0.2639054052162248,"score_spread":0.24574611518078127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140928477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966758,0.0007660774,0.0003955058,0.00010781462,0.00017493818,0.0016203488,0.00017043967,0.000029615965,0.000059455844],"genre_scores_gemma":[0.9992038,0.000040359486,0.000093192495,0.00029241957,0.00006539012,0.000096778844,0.00010550169,0.000025102858,0.000077451296],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99800026,0.0003454325,0.00045163181,0.0006623141,0.000110362256,0.00043001695],"domain_scores_gemma":[0.99891406,0.00003924421,0.00021703029,0.00054677774,0.0000628419,0.00022003724],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003318384,0.00035546848,0.000579729,0.00007567647,0.00020148861,0.000041361953,0.00019269079,0.00025833747,0.000011651133],"category_scores_gemma":[0.00009369342,0.00030847694,0.00008070608,0.00011156375,0.00016860782,0.0000042828447,0.00028174033,0.00013460118,0.00001570298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012325168,0.00048832194,0.1074395,0.0031669727,0.0008356132,0.0020238606,0.0010195839,0.00021829766,0.88444716,0.0001251105,0.00007668553,0.000035640194],"study_design_scores_gemma":[0.020086432,0.018309036,0.02219932,0.001322981,0.0016012347,0.023245642,0.0074784933,0.00022424728,0.9004805,0.0006783808,0.0008178774,0.0035558578],"about_ca_topic_score_codex":0.0014073399,"about_ca_topic_score_gemma":0.0018716874,"teacher_disagreement_score":0.08524018,"about_ca_system_score_codex":0.00004848468,"about_ca_system_score_gemma":0.00009411931,"threshold_uncertainty_score":0.99993676},"labels":[],"label_agreement":null},{"id":"W2141511170","doi":"10.1093/sysbio/syp056","title":"The Use and Validity of Composite Taxa in Phylogenetic Analysis","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Phylogenetic tree; Taxon; Evolutionary biology; Zoology; Ecology; Genetics","score_opus":0.030600088877788322,"score_gpt":0.2581542922568289,"score_spread":0.2275542033790406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141511170","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99773437,0.0006103559,0.0013050777,0.00007122569,0.000038471928,0.0002046288,0.0000119171345,0.0000020664163,0.00002189938],"genre_scores_gemma":[0.9993463,0.000045996254,0.0004821385,0.000062264124,0.000011300602,0.000002895974,0.00002549281,0.0000015410369,0.000022038974],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991423,0.0002977339,0.00025881652,0.00015203365,0.000043772598,0.000105369756],"domain_scores_gemma":[0.9994921,0.000051165694,0.0001458306,0.00023788022,0.00004726862,0.00002572032],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023798672,0.00007705284,0.00024117209,0.000056653997,0.000048902497,0.000014860543,0.00011688857,0.000112332906,0.0000019392178],"category_scores_gemma":[0.000094531395,0.000051747375,0.00006559801,0.00013757475,0.00007805117,0.0000011957432,0.000049507868,0.00003636162,5.6284273e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035931498,0.000022801718,0.86520654,0.0004648863,0.00025752455,9.663465e-7,0.00015142428,0.0008776528,0.13184789,0.0009546915,0.000017298576,0.00016238628],"study_design_scores_gemma":[0.00030977782,0.00020902345,0.99037665,0.000065065375,0.00023583155,0.00000984218,0.00008961017,0.0005759573,0.006977781,0.00097654545,0.00005927019,0.0001146283],"about_ca_topic_score_codex":0.00002102237,"about_ca_topic_score_gemma":0.00007034124,"teacher_disagreement_score":0.12517013,"about_ca_system_score_codex":0.0000030287035,"about_ca_system_score_gemma":0.000008456382,"threshold_uncertainty_score":0.21101967},"labels":[],"label_agreement":null},{"id":"W2143794041","doi":"10.1093/sysbio/syu023","title":"Supertrees Based on the Subtree Prune-and-Regraft Distance","year":2014,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Killam Trusts; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Supertree; Biology; Phylogenomics; Phylogenetic tree; Maximum parsimony; Phylum; Phylogenetics; Horizontal gene transfer; Tree (set theory); Supermatrix; Benchmark (surveying); Evolutionary biology; Tree of life (biology); Computational biology; Gene; Mathematics; Genetics; Combinatorics; Clade","score_opus":0.009303417958051773,"score_gpt":0.21175325454329327,"score_spread":0.2024498365852415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143794041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895941,0.0015680671,0.005219553,0.0013698754,0.00017502422,0.00050345104,0.000013637321,0.0000063219422,0.0015499707],"genre_scores_gemma":[0.99866396,0.000025004147,0.00021424201,0.0007875739,0.0000929872,0.00012357473,0.000008660366,0.000011507873,0.00007247734],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99895436,0.0002962976,0.0002263107,0.00027968612,0.000051592233,0.00019178572],"domain_scores_gemma":[0.99916345,0.00018079091,0.00008583501,0.00049192325,0.00004038736,0.0000376342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004615711,0.00015720051,0.000257288,0.000021570037,0.000114292336,0.00001625925,0.0001982859,0.000102506,0.000004670016],"category_scores_gemma":[0.00030648333,0.00008684886,0.00006838627,0.00003721371,0.00016465486,1.9608042e-7,0.000088271554,0.000052421852,0.000008989461],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001540621,0.00016849743,0.17000616,0.0066608954,0.0004960039,0.000002314179,0.0003767378,0.00027153242,0.67915094,0.14104483,0.0010613924,0.00060665887],"study_design_scores_gemma":[0.013185578,0.017613685,0.37728506,0.010151305,0.0014713259,0.00029439293,0.004716669,0.10941235,0.32207924,0.07011184,0.06551432,0.008164256],"about_ca_topic_score_codex":0.000009842377,"about_ca_topic_score_gemma":0.00006986191,"teacher_disagreement_score":0.3570717,"about_ca_system_score_codex":0.0000047021827,"about_ca_system_score_gemma":0.000014943831,"threshold_uncertainty_score":0.35415936},"labels":[],"label_agreement":null},{"id":"W2144029912","doi":"10.1093/sysbio/syr065","title":"Fast Bayesian Choice of Phylogenetic Models: Prospecting Data Augmentation–Based Thermodynamic Integration","year":2011,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa; McGill University; Agriculture and Agri-Food Canada","funders":"","keywords":"Atmospheric research; Bayesian probability; Marie curie; Library science; Research center; Phylogenetic tree; Agriculture; Prospecting; Bayesian inference; Biodiversity; Center (category theory); Biology; Agricultural economics; Archaeology; Statistics; Geography; Ecology; Mathematics; Computer science; Political science; Engineering; Economics; Genetics; Meteorology","score_opus":0.06833684578545228,"score_gpt":0.28600647256912537,"score_spread":0.21766962678367308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144029912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8289313,0.0013978948,0.16764055,0.000017304019,0.00017166624,0.0008211355,0.00007684912,0.0000073848305,0.0009359499],"genre_scores_gemma":[0.9921239,0.00002002818,0.007472685,0.000046341134,0.000060916944,0.00009224372,0.00014963024,0.000019180026,0.000015086769],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99861276,0.00019287103,0.0005166507,0.00041944836,0.00006636938,0.0001919111],"domain_scores_gemma":[0.9986124,0.00003572746,0.00034657866,0.00085261464,0.00011588326,0.0000367623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035299972,0.00018001781,0.00033463922,0.00005649801,0.00006412422,0.000007854336,0.00047005847,0.00013398362,0.000007859214],"category_scores_gemma":[0.00011394449,0.00014359984,0.000062382336,0.000074751595,0.00011096154,0.0000017497516,0.00022811168,0.00005293072,0.0000021736898],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041388717,0.00011421199,0.0153589975,0.002436677,0.00026958788,4.3351136e-7,0.0006831297,0.00036901844,0.978561,0.0015899186,0.000007600913,0.0005680589],"study_design_scores_gemma":[0.0038132288,0.0026701898,0.049244873,0.0025519119,0.0008828933,0.000040154242,0.0050583505,0.47398877,0.437405,0.022572266,0.0000135750815,0.0017587866],"about_ca_topic_score_codex":0.00011917789,"about_ca_topic_score_gemma":0.000151323,"teacher_disagreement_score":0.541156,"about_ca_system_score_codex":0.000012428312,"about_ca_system_score_gemma":0.000056484983,"threshold_uncertainty_score":0.58558315},"labels":[],"label_agreement":null},{"id":"W2146090382","doi":"10.1080/10635150120358","title":"Assessment of the Accuracy of Matrix Representation with Parsimony Analysis Supertree Construction","year":2001,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Supertree; Phylogenetic tree; Tree (set theory); Statistics; Representation (politics); Maximum parsimony; Mathematics; Biology; Algorithm; Combinatorics","score_opus":0.01366650074213705,"score_gpt":0.3000724090729475,"score_spread":0.2864059083308105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146090382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99355376,0.00045319117,0.0052044378,0.00005789523,0.00007168703,0.00036486058,0.0000138506475,0.0000011847682,0.00027914546],"genre_scores_gemma":[0.99814105,0.00007861398,0.0016803115,0.000010919355,0.000019268273,0.00003111218,0.000013687679,0.0000041547596,0.00002088442],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991012,0.00019630704,0.00037183642,0.0001713249,0.00006780395,0.00009149752],"domain_scores_gemma":[0.99897707,0.00005619266,0.00038715082,0.00043146877,0.0001333759,0.000014762536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018798817,0.0000859366,0.00034248296,0.000048262147,0.00003624979,0.0000033580056,0.00014190693,0.00007092355,0.0000058969163],"category_scores_gemma":[0.00008715128,0.00004923464,0.00012699331,0.00023124505,0.00015585135,5.1941447e-7,0.00008320428,0.000028043718,1.8965811e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013823439,0.00001980748,0.7207818,0.00050185696,0.00085934374,1.3788396e-7,0.000045704415,0.0006065499,0.27636302,0.00077753916,0.0000027278275,0.000027701513],"study_design_scores_gemma":[0.0007787672,0.00047969146,0.91022944,0.0002647697,0.0015907456,0.000047404716,0.001787247,0.0012478913,0.082633175,0.0007062433,0.000025469692,0.00020913243],"about_ca_topic_score_codex":0.00007646293,"about_ca_topic_score_gemma":0.000093231756,"teacher_disagreement_score":0.19372983,"about_ca_system_score_codex":0.000006423632,"about_ca_system_score_gemma":0.000041747917,"threshold_uncertainty_score":0.20077305},"labels":[],"label_agreement":null},{"id":"W2146102426","doi":"10.1093/sysbio/syu083","title":"From Integrative Taxonomy to Species Description: One Step Beyond","year":2014,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":338,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada","funders":"Agence Nationale de la Recherche","keywords":"Taxonomy (biology); Biology; Taxon; Evolutionary biology; Ecology","score_opus":0.054570266279592265,"score_gpt":0.24058758715875955,"score_spread":0.18601732087916728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146102426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7579858,0.00007340652,0.090620585,0.0012306627,0.0007848658,0.0019292834,0.00015723021,0.0001075722,0.14711064],"genre_scores_gemma":[0.99634004,0.0000018811035,0.0014761544,0.00064348185,0.00008685922,0.00050973624,0.000063958156,0.000005709265,0.00087217946],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","domain_scores_codex":[0.99883956,0.00024250332,0.00031358984,0.00028186888,0.0001076537,0.00021483765],"domain_scores_gemma":[0.9993392,0.00011387227,0.000116524134,0.00030834076,0.00001572078,0.00010632031],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00028809853,0.00013877357,0.00036093616,0.000026088457,0.000077056146,0.000038541762,0.00024357263,0.00008802146,0.037301436],"category_scores_gemma":[0.00017451143,0.000100588455,0.000056484634,0.00013285369,0.00015194294,0.000058244368,0.00019510914,0.00007067357,0.0073421192],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015623264,0.00089783664,0.20713857,0.004449374,0.0004920534,0.0000083542045,0.011669682,0.00003868378,0.2714042,0.390088,0.11037801,0.0032790136],"study_design_scores_gemma":[0.003959205,0.0025093285,0.46783176,0.0049112947,0.0004910703,0.000046894424,0.14370339,0.0027662034,0.021369925,0.038254682,0.31055194,0.0036043248],"about_ca_topic_score_codex":0.00037913548,"about_ca_topic_score_gemma":0.0007344441,"teacher_disagreement_score":0.3518333,"about_ca_system_score_codex":0.00033723438,"about_ca_system_score_gemma":0.000003227571,"threshold_uncertainty_score":0.9934308},"labels":[],"label_agreement":null},{"id":"W2146785890","doi":"10.1080/10635150802304779","title":"The Role of Geography and Ecological Opportunity in the Diversification of Day Geckos (Phelsuma)","year":2008,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Division of Environmental Biology; Western Canada Research Grid; National Science Foundation","keywords":"Archipelago; Gekkonidae; Biology; Ecology; Colonization; Insular biogeography; Genus; Gecko; Diversification (marketing strategy); Biogeography","score_opus":0.020812366636477238,"score_gpt":0.21985993517744662,"score_spread":0.1990475685409694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146785890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972007,0.00030126824,0.000025889118,0.00013481647,0.00003297229,0.00040011655,0.0000036481301,0.0000034587745,0.0018970796],"genre_scores_gemma":[0.9997888,0.00009671969,0.000035640904,0.000038903396,0.0000043689283,0.000023647824,0.0000020091413,0.0000011119753,0.000008770073],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987783,0.00065031037,0.00029254504,0.000113447415,0.000058261227,0.000107145206],"domain_scores_gemma":[0.99916404,0.00039815417,0.00020160647,0.00020760496,0.000006138101,0.000022475619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091126765,0.000055938064,0.00019292317,0.000019145808,0.00009346221,0.0000014009988,0.00023727024,0.000092072274,0.000055054898],"category_scores_gemma":[0.00013982151,0.00002422374,0.000038604605,0.00007753474,0.0011130413,0.0000142458575,0.00010930933,0.000058495545,0.000007754588],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000069621115,0.0000631399,0.99082714,0.00014425142,0.000012426192,0.0000010684172,0.0009210497,0.000003073892,0.004939893,0.0027802165,0.000014938205,0.00028584924],"study_design_scores_gemma":[0.000102874474,0.0001337306,0.9947061,0.0000328242,0.00000984633,0.000025842384,0.0021256737,0.0001698526,0.00018419411,0.0024068488,0.000060866223,0.000041344025],"about_ca_topic_score_codex":0.00010951638,"about_ca_topic_score_gemma":0.000051630715,"teacher_disagreement_score":0.0047556986,"about_ca_system_score_codex":0.000009726651,"about_ca_system_score_gemma":0.000006186701,"threshold_uncertainty_score":0.41010472},"labels":[],"label_agreement":null},{"id":"W2147219514","doi":"10.1080/10635150490423403","title":"Molecular Phylogeny, Historical Biogeography, and Divergence Time Estimates for Swallowtail Butterflies of the Genus Papilio (Lepidoptera: Papilionidae)","year":2004,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Lepidoptera: Biology and Taxonomy","field":"Biochemistry, Genetics and Molecular Biology","cited_by":257,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Polyphyly; Paraphyly; Maximum parsimony; Zoology; Sensu; Genus; Phylogenetic tree; Phylogenetics; Evolutionary biology; Clade; Genetics","score_opus":0.008821759411440457,"score_gpt":0.21515155217691054,"score_spread":0.2063297927654701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147219514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9774503,0.009576953,0.01026969,0.000515822,0.00042521747,0.0012444442,0.000032264543,0.000019671497,0.00046560075],"genre_scores_gemma":[0.99745303,0.00003925419,0.0018746605,0.00021565815,0.00007257879,0.00025685036,0.000034863824,0.000013188451,0.000039914547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842876,0.00018822754,0.0005405898,0.0004555595,0.000066111126,0.00032072465],"domain_scores_gemma":[0.99888366,0.000102264574,0.0003105157,0.0005136168,0.00012198324,0.00006795202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036898773,0.00026584766,0.0005368768,0.00006722256,0.00013842109,0.0000110678475,0.000377636,0.000336023,0.000008596181],"category_scores_gemma":[0.0003020868,0.00017330347,0.0002674096,0.000107199514,0.00038389442,0.000004352238,0.00026289793,0.00008852198,0.000012579739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022962567,0.000309705,0.26686418,0.008657083,0.0016132446,0.0000067316564,0.00032404801,0.00017251883,0.71549547,0.0049094325,0.00008656622,0.0013314004],"study_design_scores_gemma":[0.006053438,0.004691192,0.01574935,0.0034343842,0.0015446215,0.00020387225,0.0002994641,0.00033208833,0.93565917,0.02381714,0.0058229575,0.0023923346],"about_ca_topic_score_codex":0.000063625484,"about_ca_topic_score_gemma":0.0000049072705,"teacher_disagreement_score":0.25111482,"about_ca_system_score_codex":0.000033680695,"about_ca_system_score_gemma":0.000059452348,"threshold_uncertainty_score":0.70671105},"labels":[],"label_agreement":null},{"id":"W2149582283","doi":"10.1093/sysbio/syt003","title":"Lateral Gene Transfer from the Dead","year":2013,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":135,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Institut National de Physique Nucléaire et de Physique des Particules; Agence Nationale de la Recherche","keywords":"Biology; Phylogenetics; Phylogenetic tree; Lineage (genetic); Horizontal gene transfer; Evolutionary biology; Macroevolution; Genetic algorithm; Molecular phylogenetics; Gene; Genetics","score_opus":0.011527363318022168,"score_gpt":0.2133231248667484,"score_spread":0.20179576154872622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149582283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99333656,0.0037352124,0.0013583564,0.00044717488,0.00026161576,0.0006265136,0.000031139363,0.0000043932923,0.00019905962],"genre_scores_gemma":[0.9983619,0.000057920992,0.00035176956,0.00066290965,0.00022034606,0.00021783196,0.000036765694,0.000011640542,0.00007894052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906045,0.00018213363,0.00027543842,0.00023903203,0.00003834055,0.00020462707],"domain_scores_gemma":[0.9994145,0.000050810107,0.000040048184,0.0004020499,0.00005554192,0.000037039066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001397517,0.00013954272,0.00023738867,0.000009559015,0.00008195612,0.000022992217,0.00025880005,0.000129265,0.000043325654],"category_scores_gemma":[0.000037255115,0.00007878902,0.000092075934,0.000026469937,0.00008888632,3.705704e-7,0.00009939037,0.000050361123,0.00009762994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000055258056,0.000013465236,0.019303273,0.00021013097,0.00023300303,3.289669e-7,0.00023103225,0.0000063669854,0.97929335,0.0003736465,0.0002532758,0.000076631004],"study_design_scores_gemma":[0.0037276035,0.0014750756,0.43119434,0.00092234334,0.0006267574,0.00012879126,0.0019708048,0.0008212213,0.5184484,0.033986263,0.0045323553,0.0021660267],"about_ca_topic_score_codex":0.0002697343,"about_ca_topic_score_gemma":0.000054086668,"teacher_disagreement_score":0.4608449,"about_ca_system_score_codex":0.0000044822227,"about_ca_system_score_gemma":0.000016777363,"threshold_uncertainty_score":0.32129228},"labels":[],"label_agreement":null},{"id":"W2151062029","doi":"10.1080/10635150701607033","title":"Estimating a Binary Character's Effect on Speciation and Extinction","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":1209,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Evolutionary Synthesis Center; National Science Foundation","keywords":"Genetic algorithm; Character (mathematics); Macroevolution; Biology; Extinction (optical mineralogy); Character evolution; Phylogenetic tree; Binary number; Extant taxon; Evolutionary biology; Lineage (genetic); Statistical physics; Statistics; Mathematics; Physics; Clade; Genetics; Paleontology","score_opus":0.014869099853674217,"score_gpt":0.25215735377807275,"score_spread":0.23728825392439853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151062029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921555,0.00065101427,0.0013096591,0.000100701036,0.000848769,0.0003476571,0.0000034396576,0.000045763714,0.0045375107],"genre_scores_gemma":[0.9991825,0.0000028191157,0.00050998584,0.000111365145,0.00014929367,0.0000028215713,0.000017300366,0.0000010424058,0.00002284466],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99911994,0.00025264197,0.00024946945,0.00015969081,0.000052049058,0.00016619821],"domain_scores_gemma":[0.99895054,0.0007629293,0.00014600207,0.000085257874,0.000016364556,0.000038902122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012042632,0.00009181115,0.00024478216,0.00008646026,0.00014459023,0.0000099577255,0.000041796833,0.00008926393,0.00007636196],"category_scores_gemma":[0.0002519431,0.00006070426,0.000024148914,0.000065591106,0.00006224389,0.000036751284,0.0000057287834,0.00007964035,0.0001458179],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003445518,0.0000045965444,0.9951803,0.0015830622,0.000026220217,0.0000042714605,0.00020924446,0.000022977334,0.00012982183,0.00020868696,0.000008302377,0.00258803],"study_design_scores_gemma":[0.00016841538,0.00049014285,0.99033135,0.000347221,0.000018875186,0.00003545039,0.00009715472,0.00813962,0.000020336327,0.00026883377,0.0000097860175,0.00007284052],"about_ca_topic_score_codex":0.00006079349,"about_ca_topic_score_gemma":0.0014004492,"teacher_disagreement_score":0.008116643,"about_ca_system_score_codex":0.0000044736357,"about_ca_system_score_gemma":0.0000039391607,"threshold_uncertainty_score":0.24754478},"labels":[],"label_agreement":null},{"id":"W2152298208","doi":"10.1093/sysbio/syt022","title":"PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment","year":2013,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bayesian Methods and Mixture Models","field":"Computer Science","cited_by":936,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Agriculture and Agri-Food Canada; Université de Montréal","funders":"","keywords":"Computer science; Dirichlet process; Phylogenomics; Hierarchical Dirichlet process; Dirichlet distribution; Gibbs sampling; Inference; Representation (politics); Tree (set theory); Phylogenetic tree; Algorithm; Theoretical computer science; Bayesian probability; Latent Dirichlet allocation; Mathematics; Artificial intelligence; Topic model; Combinatorics; Biology; Boundary value problem","score_opus":0.011329849681937863,"score_gpt":0.22191598189564,"score_spread":0.21058613221370212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152298208","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17590165,0.0005762912,0.82209265,0.00013877185,0.0000859822,0.0009506887,0.0000013229399,0.000019784042,0.00023283792],"genre_scores_gemma":[0.629857,0.0000114708255,0.36983857,0.00003274267,0.000010216051,0.00023540878,6.580859e-7,0.000003672391,0.000010280032],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9983173,0.00056020555,0.00050207565,0.00031377716,0.00008800294,0.00021863976],"domain_scores_gemma":[0.99900824,0.00013494061,0.00029430864,0.00048361122,0.000033769087,0.000045128043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000388725,0.00015447292,0.0004838354,0.00013445716,0.00002329249,0.000022908165,0.00036416002,0.00012096591,0.000020022595],"category_scores_gemma":[0.000029879062,0.00009709443,0.000044277822,0.00013706688,0.0001180128,0.00008734352,0.000098167715,0.0000913467,0.00001767327],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000669699,0.0006301562,0.12627278,0.045112938,0.0005871805,0.000024171093,0.00875141,0.0010842939,0.19528618,0.5137557,0.00007509468,0.10835315],"study_design_scores_gemma":[0.0029745009,0.001977353,0.05667921,0.009489769,0.000102075,0.00067141315,0.0004839793,0.11995126,0.022790318,0.7834322,0.000012384241,0.0014355223],"about_ca_topic_score_codex":0.0000649772,"about_ca_topic_score_gemma":0.0000065446093,"teacher_disagreement_score":0.45395535,"about_ca_system_score_codex":0.000020547486,"about_ca_system_score_gemma":0.000029831974,"threshold_uncertainty_score":0.39593962},"labels":[],"label_agreement":null},{"id":"W2153888427","doi":"10.1093/sysbio/syp013","title":"Measuring Branch Support in Species Trees Obtained by Gene Tree Parsimony","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Allan Wilson Centre","keywords":"Coalescent theory; Biology; Tree (set theory); Phylogenetic tree; Sampling (signal processing); Statistics; Evolutionary biology; Context (archaeology); Nonparametric statistics; Gene; Mathematics; Genetics; Combinatorics; Computer science","score_opus":0.021723666530954353,"score_gpt":0.22747785720003064,"score_spread":0.2057541906690763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153888427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956573,0.0007922862,0.0014262536,0.0002859944,0.00015915422,0.00036504373,0.00002967061,0.000015710899,0.0012685356],"genre_scores_gemma":[0.99840754,0.000029082774,0.00030128157,0.00040552174,0.00007266441,0.000009956829,0.0002326628,0.000006212147,0.0005350897],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987787,0.00018802761,0.00037581247,0.0003052357,0.00008939423,0.0002628019],"domain_scores_gemma":[0.99944097,0.000010722587,0.0001313649,0.00031271626,0.00004205986,0.00006216728],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026345154,0.0001675604,0.0003486426,0.000068728965,0.000043429638,0.000017824268,0.0002290562,0.00024656128,0.00004162958],"category_scores_gemma":[0.00007992617,0.00014447175,0.00008407377,0.000084431835,0.000046972928,0.000002911457,0.000053035794,0.00007129041,0.000015775508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003870545,0.000050403778,0.03609478,0.0005553979,0.00007368161,0.0000044980375,0.00035852884,0.00009536794,0.96077865,0.000359139,0.0012642218,0.00032660278],"study_design_scores_gemma":[0.0055201356,0.0020686132,0.45402986,0.00072897656,0.00024476892,0.00018823631,0.0012419205,0.00024205066,0.5190898,0.0071696555,0.0076716132,0.0018043392],"about_ca_topic_score_codex":0.000012102898,"about_ca_topic_score_gemma":0.000059020276,"teacher_disagreement_score":0.44168884,"about_ca_system_score_codex":0.000016239834,"about_ca_system_score_gemma":0.000025715228,"threshold_uncertainty_score":0.5891387},"labels":[],"label_agreement":null},{"id":"W2153941631","doi":"10.1080/10635150802164421","title":"Estimating Evolution of Temporal Sequence Changes: A Practical Approach to Inferring Ancestral Developmental Sequences and Sequence Heterochrony","year":2008,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Heterochrony; Biology; Modularity (biology); Sequence (biology); Evolutionary biology; Phylogenetic tree; Inference; Phylogenetics; Context (archaeology); Computer science; Genetics; Artificial intelligence; Paleontology; Gene; Ontogeny","score_opus":0.08456343820803533,"score_gpt":0.31434306163440645,"score_spread":0.22977962342637112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153941631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9766108,0.00073368824,0.021812331,0.000054649245,0.00009962807,0.00052329595,0.000016538806,0.000006185217,0.00014290857],"genre_scores_gemma":[0.8952872,0.000021167727,0.10443834,0.000046208086,0.00006463636,0.00011568395,0.000011371953,0.0000082642855,0.0000070883334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875903,0.00013798436,0.00038603906,0.00037766775,0.00008458436,0.00025468983],"domain_scores_gemma":[0.99942803,0.00003406779,0.00020916044,0.0001695236,0.00008120482,0.00007799883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003142657,0.00017598057,0.00036938023,0.00005477371,0.00012316045,0.000008350737,0.00013714307,0.00012546525,7.3514684e-7],"category_scores_gemma":[0.00025422213,0.00014601192,0.000035196612,0.00008602866,0.00028870546,0.0000025389281,0.00020170979,0.00006409462,0.0000016206959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020050255,0.000034747598,0.07749689,0.0029421055,0.00009754262,0.0000037261896,0.0010068143,0.0002505356,0.9175749,0.0005133082,0.0000068295376,0.000052552183],"study_design_scores_gemma":[0.007957542,0.015474071,0.25482932,0.015736034,0.00084905024,0.033018842,0.0294175,0.088944785,0.5347628,0.009559213,0.0003873138,0.009063507],"about_ca_topic_score_codex":0.00014723715,"about_ca_topic_score_gemma":0.000045435627,"teacher_disagreement_score":0.38281208,"about_ca_system_score_codex":0.00004785349,"about_ca_system_score_gemma":0.00016738535,"threshold_uncertainty_score":0.59541935},"labels":[],"label_agreement":null},{"id":"W2154852827","doi":"10.1093/sysbio/sys075","title":"Problems With Estimation of Ancestral Frequencies Under Stationary Models","year":2012,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Estimation; Evolutionary biology; Statistics; Econometrics; Mathematics; Economics","score_opus":0.03281676955077231,"score_gpt":0.25467784675828237,"score_spread":0.22186107720751005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154852827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8876975,0.00067656743,0.11091666,0.000028791583,0.0000796327,0.00029494477,0.000019618548,0.0000064851647,0.00027976284],"genre_scores_gemma":[0.9918186,0.000005508946,0.007914513,0.00004097767,0.000028236962,0.000017602766,0.00012731347,0.000004561357,0.00004266238],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.99940383,0.0000914573,0.0002011078,0.00010562201,0.00006637196,0.0001316071],"domain_scores_gemma":[0.9995608,0.000011871147,0.00016450326,0.00015892353,0.00006751806,0.000036435304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014527829,0.000083256185,0.00015920307,0.000029910498,0.0000333477,0.000004199924,0.00007926611,0.00010712989,0.000010641848],"category_scores_gemma":[0.00001488733,0.000060067527,0.000028524095,0.00004693216,0.00008067504,0.000008065641,0.000028086466,0.000029452694,0.000002689127],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011326439,0.00016972971,0.13296346,0.019093672,0.000568758,5.247478e-7,0.0031072407,0.58028555,0.15866643,0.10466983,0.00013134858,0.00023018726],"study_design_scores_gemma":[0.009439282,0.006478354,0.37396348,0.008116199,0.0016968033,0.0009978635,0.019714091,0.07968853,0.22018325,0.2749855,0.00025254002,0.004484117],"about_ca_topic_score_codex":0.000016669339,"about_ca_topic_score_gemma":0.000006335061,"teacher_disagreement_score":0.500597,"about_ca_system_score_codex":0.0000058256437,"about_ca_system_score_gemma":0.000030283223,"threshold_uncertainty_score":0.24494825},"labels":[],"label_agreement":null},{"id":"W2156052711","doi":"10.1080/10635150252899789","title":"Systematic Data in Biodiversity Studies: Use It or Lose It","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":168,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Museum of Natural History; United States Agency for International Development; World Bank Group; Smithsonian Institution","keywords":"Biodiversity; Biology; Global biodiversity; Ecology; Distribution (mathematics); Mathematics","score_opus":0.29879195397490754,"score_gpt":0.3335267178160953,"score_spread":0.03473476384118773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156052711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9830049,0.001913913,0.00014900137,0.0053329975,0.000887411,0.004258883,0.0007709078,0.00014792211,0.0035340155],"genre_scores_gemma":[0.9975648,0.00024223569,0.000052993742,0.0012598133,0.000010040219,0.00008414036,0.00006598096,0.000005215778,0.00071481336],"study_design_codex":"systematic_review","study_design_gemma":"qualitative","domain_scores_codex":[0.9978492,0.0005076039,0.0006846868,0.00044214295,0.00018202268,0.00033432967],"domain_scores_gemma":[0.99808085,0.00051665027,0.00026536323,0.0010426888,0.000016119004,0.00007831087],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0009320639,0.00018411301,0.0007247863,0.000054085765,0.0001009878,0.00003792101,0.000740099,0.00012428533,0.01998],"category_scores_gemma":[0.0016618408,0.000118661046,0.00004892266,0.00031985913,0.00024647472,0.00022149237,0.001001707,0.00009402473,0.009595399],"study_design_candidate":"qualitative","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006821887,0.0011398761,0.194951,0.51850444,0.00076299184,0.0003396673,0.016205182,0.000018604738,0.00075723475,0.0015535349,0.26568264,0.000016653894],"study_design_scores_gemma":[0.012398553,0.0019196159,0.05196629,0.17273329,0.002639349,0.0013104501,0.7111465,0.029969716,0.00026898086,0.00081357313,0.008550738,0.006282971],"about_ca_topic_score_codex":0.0002666702,"about_ca_topic_score_gemma":0.0023933572,"teacher_disagreement_score":0.6949413,"about_ca_system_score_codex":0.000533294,"about_ca_system_score_gemma":0.0000034984812,"threshold_uncertainty_score":0.9911758},"labels":[],"label_agreement":null},{"id":"W2156543913","doi":"10.1093/sysbio/syr028","title":"Improved Least Squares Topology Testing and Estimation","year":2011,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Structural Health Monitoring Techniques","field":"Engineering","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Network topology; Covariance; Set (abstract data type); Mathematics; Generalized least squares; Parametric statistics; Covariance matrix; Algorithm; Mathematical optimization; Computer science; Statistics","score_opus":0.04834394066522422,"score_gpt":0.28715575986366637,"score_spread":0.23881181919844216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156543913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841587,0.0003960112,0.01306168,0.000010912479,0.00056972384,0.00053394394,0.0000018244517,0.00078503654,0.00048219797],"genre_scores_gemma":[0.9397607,0.0000024798735,0.06007756,0.000008670092,0.000038964456,0.000097277945,8.2785334e-7,0.000011525067,0.0000020181221],"study_design_codex":"systematic_review","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9993088,0.00006755177,0.00030357536,0.00011507626,0.000020680676,0.00018430478],"domain_scores_gemma":[0.9995324,0.00017064928,0.00006171112,0.00016380067,0.000030449433,0.00004096726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017710864,0.0001059196,0.00025454225,0.00006692624,0.00003969483,0.00000604032,0.000084781226,0.00013038001,0.000006424231],"category_scores_gemma":[0.00027172253,0.00008434244,0.0000127663925,0.00005899338,0.000054258824,0.00003508603,0.000034848832,0.00009032039,0.000004752125],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068447924,0.00006128981,0.21681423,0.46364316,0.00047459023,0.00003302477,0.017608233,0.00031691877,0.10799948,0.0750873,0.00011950924,0.117773786],"study_design_scores_gemma":[0.0006004992,0.00090845535,0.15415202,0.0056958585,0.000112820955,0.00061239797,0.0007584545,0.7022153,0.022401629,0.111620404,0.0000025476602,0.00091962935],"about_ca_topic_score_codex":0.000161338,"about_ca_topic_score_gemma":0.000005307963,"teacher_disagreement_score":0.7018984,"about_ca_system_score_codex":0.000033467437,"about_ca_system_score_gemma":0.0000059496624,"threshold_uncertainty_score":0.3439385},"labels":[],"label_agreement":null},{"id":"W2156644391","doi":"10.1080/10635150390196993","title":"Accelerated Likelihood Surface Exploration: The Likelihood Ratchet","year":2003,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; Simon Fraser University","keywords":"Tree (set theory); Algorithm; Set (abstract data type); Heuristic; Inference; Tree rearrangement; Mathematical optimization; Mathematics; Computer science; Local optimum; Phylogenetic tree; Artificial intelligence; Biology; Combinatorics","score_opus":0.027343739416931082,"score_gpt":0.2585332501050232,"score_spread":0.23118951068809213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156644391","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98636687,0.006849847,0.0030800377,0.0005418198,0.00058979774,0.00093695783,0.000014338719,0.000011748822,0.0016085763],"genre_scores_gemma":[0.9984351,0.00015707372,0.00061221706,0.00037770654,0.00011304506,0.00013509301,0.000024817175,0.000020540612,0.00012443702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99816585,0.0005803272,0.0004463003,0.00036635165,0.00007316418,0.0003680391],"domain_scores_gemma":[0.99891853,0.00005848119,0.00018537488,0.00061471266,0.00015596929,0.00006691241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073686463,0.00022696631,0.00034885478,0.00001905711,0.00020028361,0.0000402211,0.00028659336,0.00019184758,0.000019417554],"category_scores_gemma":[0.00021465015,0.00014338575,0.000109363275,0.000120236924,0.000106349726,0.0000011684856,0.00011753285,0.0000938576,0.000052283805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025465391,0.000092913164,0.0075693973,0.0012793605,0.0005083535,0.0000019850843,0.00072733616,0.00019029979,0.9844894,0.0041070343,0.0009384229,0.00007004719],"study_design_scores_gemma":[0.0052135778,0.002808266,0.005711993,0.0010348535,0.0007190201,0.000355772,0.014490197,0.0007035501,0.89358675,0.050167754,0.022229271,0.0029790022],"about_ca_topic_score_codex":0.000015121702,"about_ca_topic_score_gemma":0.00003878539,"teacher_disagreement_score":0.09090264,"about_ca_system_score_codex":0.000011697677,"about_ca_system_score_gemma":0.00010001346,"threshold_uncertainty_score":0.5847101},"labels":[],"label_agreement":null},{"id":"W2156752695","doi":"10.1080/10635150252899725","title":"Reconstruction of Biogeographic and Evolutionary Networks Using Reticulograms","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université du Québec à Montréal; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Reticulate; Reticulate evolution; Biological dispersal; Phylogenetic tree; Biology; Microevolution; Ecology; Evolutionary biology; Tree (set theory); Population; Paleontology","score_opus":0.03018211186563449,"score_gpt":0.2165722122053524,"score_spread":0.1863901003397179,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156752695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96549517,0.031360414,0.0010953284,0.00007767408,0.00048129805,0.0002503091,0.0000111292775,0.000026885133,0.0012018004],"genre_scores_gemma":[0.9983245,0.00027263453,0.0013376366,0.000023935381,0.000027830412,0.0000014799542,0.000005424071,8.337602e-7,0.000005700597],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990962,0.00026542696,0.00031113162,0.0001426535,0.000037967475,0.00014659377],"domain_scores_gemma":[0.99949414,0.0001586588,0.0001694628,0.00010284169,0.000039182964,0.000035714504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000216707,0.00008007692,0.0002874544,0.00009540734,0.00010982886,0.0000041206904,0.000053868942,0.00012216406,0.00019338526],"category_scores_gemma":[0.000056346442,0.000057790374,0.000042469517,0.00015946182,0.00044938247,0.000034838682,0.000008320747,0.00006363323,0.0000068540353],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000026018374,0.0000039444835,0.998086,0.0007714192,0.000046057383,5.626624e-7,0.00006437494,0.00018229081,0.000010916416,0.00030366323,0.000007869967,0.0005203075],"study_design_scores_gemma":[0.00018469793,0.00013370179,0.6865774,0.0006330611,0.000075034084,0.00038609156,0.00050563476,0.30915752,0.0000014354077,0.0022136716,0.000004734037,0.00012703959],"about_ca_topic_score_codex":0.00032279253,"about_ca_topic_score_gemma":0.00093199505,"teacher_disagreement_score":0.31150863,"about_ca_system_score_codex":0.0000015670258,"about_ca_system_score_gemma":0.0000029747835,"threshold_uncertainty_score":0.2356623},"labels":[],"label_agreement":null},{"id":"W2157550858","doi":"10.1080/10635150590906046","title":"Biogeographic Interpretation of Splits Graphs: Least Squares Optimization of Branch Lengths","year":2005,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Marsden Fund; Massey University","keywords":"Divergence (linguistics); Context (archaeology); Interpretation (philosophy); Least-squares function approximation; Phylogenetic tree; Mathematical optimization; Mathematics; Decomposition; Algorithm; Computer science; Statistics; Biology; Ecology; Paleontology","score_opus":0.011582976327301323,"score_gpt":0.2317765526405474,"score_spread":0.22019357631324607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157550858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96117824,0.012012493,0.021693412,0.00025564895,0.00039583282,0.0006117114,0.0000829347,0.000042990883,0.0037267562],"genre_scores_gemma":[0.9982445,0.000087988854,0.0015627375,0.000035744608,0.000015580075,0.0000039383294,0.000040747593,0.0000012835293,0.0000074757318],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99877304,0.0003151701,0.00056331285,0.0001427871,0.000074389136,0.00013128694],"domain_scores_gemma":[0.9991119,0.00025110898,0.00035792534,0.00014465074,0.00010704104,0.000027357231],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037568007,0.00009646494,0.0004064717,0.00021114657,0.000047164376,0.0000034558984,0.0001261424,0.00010529218,0.00017951682],"category_scores_gemma":[0.00013897641,0.00006998724,0.000085082494,0.00022945018,0.00024443472,0.00006509025,0.000007431131,0.000049934937,0.000016812459],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030091505,0.00002039583,0.97391015,0.0039377376,0.000108386455,1.2215695e-7,0.0008292981,0.018282354,0.000060088376,0.001889292,0.000010999016,0.0009211051],"study_design_scores_gemma":[0.0006977336,0.0005469626,0.72923744,0.0021829032,0.00016820514,0.000025875073,0.0016616329,0.26186174,0.00020311543,0.0031246066,0.000011095218,0.00027869732],"about_ca_topic_score_codex":0.00025812848,"about_ca_topic_score_gemma":0.004627905,"teacher_disagreement_score":0.24467272,"about_ca_system_score_codex":0.0000014763232,"about_ca_system_score_gemma":0.000013504868,"threshold_uncertainty_score":0.28539968},"labels":[],"label_agreement":null},{"id":"W2158571933","doi":"10.1093/sysbio/sys047","title":"Testing of the Effect of Missing Data Estimation and Distribution in Morphometric Multivariate Data Analyses","year":2012,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Morphological variations and asymmetry","field":"Mathematics","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Missing data; Statistics; Data set; Multivariate statistics; Principal component analysis; Sample size determination; Mathematics; Sample (material)","score_opus":0.2721614407949452,"score_gpt":0.42842471405787763,"score_spread":0.15626327326293243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158571933","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8270192,0.00055525725,0.1714375,0.000025744084,0.00007974785,0.00059254374,0.0002512221,0.000010567732,0.000028220651],"genre_scores_gemma":[0.9634883,5.766454e-7,0.03634171,0.0000018111119,0.000012457234,0.000007941029,0.00014269898,0.0000038389785,6.7183885e-7],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99804324,0.00091127696,0.0006496575,0.00017191276,0.00008672183,0.00013716605],"domain_scores_gemma":[0.9935619,0.004726146,0.00064246083,0.0010129905,0.00003249136,0.000023970953],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0034480009,0.00009494972,0.0005244974,0.0000977565,0.000039369443,0.0000074650115,0.0004366543,0.00009197544,0.0000053565996],"category_scores_gemma":[0.025969936,0.000049197577,0.000020219868,0.0006916169,0.00006745373,0.00011849637,0.0006425822,0.0000797373,6.370916e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000225848,0.00031238687,0.8877185,0.055662055,0.00024577015,0.0000010773389,0.0001898769,0.00006330838,0.036753356,0.012879201,0.00006582175,0.006086081],"study_design_scores_gemma":[0.0009759571,0.0001567042,0.42787084,0.0044090864,0.00070210424,0.00005152556,0.00012044015,0.5535811,0.005624964,0.0063013313,8.919119e-7,0.00020501792],"about_ca_topic_score_codex":0.00014929278,"about_ca_topic_score_gemma":0.000002027176,"teacher_disagreement_score":0.5535178,"about_ca_system_score_codex":0.00001628163,"about_ca_system_score_gemma":0.000010790351,"threshold_uncertainty_score":0.9822347},"labels":[],"label_agreement":null},{"id":"W2158952520","doi":"10.1093/sysbio/syp016","title":"Bootstrap Support Is Not First-Order Correct","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Statistical Methods and Inference","field":"Mathematics","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Interpretation (philosophy); Value (mathematics); Space (punctuation); Order (exchange); Mathematics; Tree (set theory); Limiting; Boundary (topology); Statistics; Computer science; Combinatorics; Mathematical analysis","score_opus":0.1520607462206018,"score_gpt":0.41378171561580573,"score_spread":0.26172096939520395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158952520","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.034825746,0.00011190374,0.94219285,0.0025129535,0.0010155233,0.0016635436,0.00007556101,0.0002552851,0.01734661],"genre_scores_gemma":[0.87641805,0.0000039614797,0.1216374,0.0014102455,0.00006161721,0.000051193965,0.0000032165697,0.000011371789,0.0004029173],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9981437,0.00031785658,0.0007680275,0.00029456255,0.00012936877,0.00034654033],"domain_scores_gemma":[0.9971663,0.0018554378,0.000258538,0.0004920163,0.00012964675,0.000098101555],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00088981306,0.00020413332,0.00077872357,0.000063060514,0.00007601708,0.000025469497,0.00024952204,0.00019820184,0.0011081492],"category_scores_gemma":[0.00369676,0.00014074324,0.00009409011,0.0001358046,0.0000799457,0.00002300374,0.000038647282,0.00015709527,0.00024914613],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024649438,0.0001632385,0.0008534248,0.013219789,0.00009626901,0.00001733315,0.0012499611,3.9759516e-7,0.0010761411,0.97618234,0.005467319,0.001649143],"study_design_scores_gemma":[0.00045785715,0.0007856722,0.001094506,0.0016697224,0.00014395714,0.00010151233,0.00021411118,0.0022858318,0.0013339121,0.9913336,0.00017576378,0.00040355953],"about_ca_topic_score_codex":0.000010771556,"about_ca_topic_score_gemma":0.0000041334624,"teacher_disagreement_score":0.8415923,"about_ca_system_score_codex":0.000026279668,"about_ca_system_score_gemma":0.000042160565,"threshold_uncertainty_score":0.999805},"labels":[],"label_agreement":null},{"id":"W2159748368","doi":"10.1080/10635150390235395","title":"Estimation of Rates-Across-Sites Distributions in Phylogenetic Substitution Models","year":2003,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University","funders":"Genome Atlantic; Genome Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Nonparametric statistics; Statistics; Gamma distribution; Parametric statistics; Mathematics; Parametric model; Distribution (mathematics); Probability distribution; Generalized gamma distribution; Econometrics","score_opus":0.025304479453257298,"score_gpt":0.29166484158756917,"score_spread":0.26636036213431186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159748368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9676306,0.0034537425,0.028120697,0.000010741591,0.00010063314,0.00045994623,0.000056658293,0.0000026209752,0.00016432133],"genre_scores_gemma":[0.99835,0.00007182658,0.0013594892,0.000009510476,0.000013010618,0.00010464221,0.000074019976,0.0000073931724,0.000010059569],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879324,0.0002177843,0.00047755064,0.00024533484,0.00004460986,0.00022144693],"domain_scores_gemma":[0.999419,0.0000327836,0.00017303899,0.00027219648,0.000072518946,0.00003051259],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004248419,0.00013719154,0.00032466245,0.000038370894,0.000056914938,0.0000075184967,0.00011119068,0.00014854316,0.0000026989385],"category_scores_gemma":[0.00024689536,0.00011832037,0.00007053097,0.00011305161,0.00013708936,9.515611e-7,0.000052468145,0.000042306936,0.0000033496244],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018779874,0.00010306669,0.04437544,0.0023886047,0.000102806516,9.023159e-7,0.00023054442,0.019259948,0.8974618,0.035986166,0.0000049622035,0.000067022105],"study_design_scores_gemma":[0.0025227026,0.0009564791,0.048370596,0.001046686,0.00014654106,0.0001139421,0.0009916268,0.032677904,0.85073453,0.061416373,0.000046559697,0.00097606075],"about_ca_topic_score_codex":0.000015431999,"about_ca_topic_score_gemma":0.00004211034,"teacher_disagreement_score":0.046727225,"about_ca_system_score_codex":0.000017251723,"about_ca_system_score_gemma":0.00004579033,"threshold_uncertainty_score":0.48249647},"labels":[],"label_agreement":null},{"id":"W2161909415","doi":"10.1080/10635150590949832","title":"The Shape of Supertrees to Come: Tree Shape Related Properties of Fourteen Supertree Methods","year":2005,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Supertree; Tree (set theory); Mathematics; Weighting; Algorithm; Computer science; Biology; Combinatorics; Phylogenetics","score_opus":0.027940765137529158,"score_gpt":0.2790204599129377,"score_spread":0.2510796947754086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161909415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941831,0.0035856073,0.0003578601,0.0006274396,0.00011603208,0.00045040174,0.000020286398,0.000010059846,0.00064921496],"genre_scores_gemma":[0.99637884,0.00008670777,0.0029901902,0.0000908886,0.000043639786,0.000023034621,0.00001086218,0.0000080718855,0.0003677876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99844915,0.0004073726,0.0005931803,0.00023297667,0.00008811869,0.00022917782],"domain_scores_gemma":[0.9991209,0.00009151595,0.00017879112,0.0004029988,0.00014383889,0.00006198787],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008576877,0.00015354286,0.00045484447,0.000053846474,0.00009495382,0.000008485935,0.00041554848,0.000178594,0.00002606903],"category_scores_gemma":[0.0004126063,0.0000883998,0.00013374435,0.00008525375,0.0001761686,0.0000021295218,0.00021808664,0.00005734622,0.000010665118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007295887,0.00005624859,0.004253978,0.0017049429,0.00025376075,3.725566e-7,0.0004392396,0.000042783544,0.9896056,0.00061207556,0.00025559188,0.0027024343],"study_design_scores_gemma":[0.002138377,0.0031605456,0.009769896,0.0036637245,0.00044183256,0.00013859276,0.0065753176,0.011534782,0.95427686,0.000522341,0.0067764213,0.0010013367],"about_ca_topic_score_codex":0.000028323058,"about_ca_topic_score_gemma":0.000042750835,"teacher_disagreement_score":0.03532878,"about_ca_system_score_codex":0.0000058496953,"about_ca_system_score_gemma":0.00003864125,"threshold_uncertainty_score":0.3604839},"labels":[],"label_agreement":null},{"id":"W2162703948","doi":"10.1080/10635150290102555","title":"Whole-Tree Methods for Detecting Differential Diversification Rates","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cladogenesis; Biology; Phylogenetic tree; Diversification (marketing strategy); Evolutionary biology; Tree (set theory); Null model; Clade; Mathematics; Ecology; Combinatorics; Genetics","score_opus":0.0790822868142146,"score_gpt":0.3231324740286866,"score_spread":0.24405018721447203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162703948","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36429957,0.015197619,0.60589474,0.0017044768,0.0030952273,0.0023071973,0.00008215617,0.00022754635,0.007191466],"genre_scores_gemma":[0.99003077,0.000012580934,0.009634182,0.00005419549,0.000061465216,0.000018128823,0.000021128992,0.0000012706538,0.00016625694],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988232,0.00049688265,0.0002700155,0.00018438433,0.000030340323,0.00019514364],"domain_scores_gemma":[0.9986466,0.0009913879,0.00015180117,0.00012972836,0.000044368408,0.000036113386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041292285,0.0000949797,0.00029390724,0.000058148646,0.00024512576,0.000014859133,0.0001275836,0.0000986893,0.00030264445],"category_scores_gemma":[0.00041506774,0.00006561942,0.00006774463,0.00006752248,0.00008862678,0.00003486314,0.000009273447,0.000056712437,0.00015404852],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025354188,0.000025055078,0.96587324,0.007439139,0.0002709192,6.885023e-7,0.0018151532,0.000018106724,0.0026175152,0.0012190669,0.00029083109,0.02040492],"study_design_scores_gemma":[0.0010742536,0.0004433806,0.6767091,0.000549379,0.0002689723,0.000035216737,0.0029232607,0.31045014,0.0003823918,0.006279697,0.0004084835,0.00047568916],"about_ca_topic_score_codex":0.000065457054,"about_ca_topic_score_gemma":0.0016430573,"teacher_disagreement_score":0.6257312,"about_ca_system_score_codex":0.0000029979017,"about_ca_system_score_gemma":0.0000028212444,"threshold_uncertainty_score":0.33137444},"labels":[],"label_agreement":null},{"id":"W2164887069","doi":"10.1080/10635150701291804","title":"Accounting for Gene Rate Heterogeneity in Phylogenetic Inference","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research; McGill University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Phylogenetic tree; Biology; Gene; Inference; Phylogenetics; Computational biology; Statistics; Genetics; Computer science; Mathematics; Artificial intelligence","score_opus":0.022692734946761717,"score_gpt":0.2963326156348638,"score_spread":0.2736398806881021,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164887069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9757232,0.0025593494,0.020342316,0.000026290541,0.00027607128,0.0009649954,0.000020056548,0.00000480267,0.0000829029],"genre_scores_gemma":[0.99675417,0.000049773837,0.0026412485,0.0001577424,0.00016240045,0.00017434992,0.000026368547,0.000018557985,0.000015408727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837774,0.00012885874,0.0005853525,0.00041795653,0.00004210215,0.00044800498],"domain_scores_gemma":[0.9991447,0.00015350292,0.00019994863,0.00034248942,0.00010653987,0.000052825184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015261658,0.00020227687,0.0004033872,0.00008221664,0.00007230944,0.000015193693,0.00024476234,0.00021203754,0.0000014236936],"category_scores_gemma":[0.00041252334,0.00017434877,0.00010483498,0.000085405525,0.00007854165,5.5100804e-7,0.00017044168,0.00005717528,0.000004962128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003832735,0.000027115333,0.10375524,0.0013488525,0.00007113764,0.0000012511908,0.000066399945,0.0000849468,0.89420146,0.00028110007,0.0000031976656,0.00012094567],"study_design_scores_gemma":[0.0020842343,0.00085197313,0.23181,0.0004759435,0.000091826754,0.000046116304,0.00037895684,0.0006311663,0.7589145,0.0036511575,0.00020870767,0.0008554197],"about_ca_topic_score_codex":0.000019427549,"about_ca_topic_score_gemma":0.0002608368,"teacher_disagreement_score":0.13528699,"about_ca_system_score_codex":0.000019140229,"about_ca_system_score_gemma":0.000042053256,"threshold_uncertainty_score":0.7109736},"labels":[],"label_agreement":null},{"id":"W2165339928","doi":"10.1080/10635150500354886","title":"The Promise of DNA Barcoding for Taxonomy","year":2005,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1327,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Gordon and Betty Moore Foundation","keywords":"DNA barcoding; Biology; Taxonomy (biology); Evolutionary biology; Molecular taxonomy; Computational biology; Zoology; Phylogenetics; Genetics; Gene","score_opus":0.04359060132856583,"score_gpt":0.2915600360355908,"score_spread":0.24796943470702495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165339928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83220387,0.003251471,0.15227993,0.002712455,0.0009513548,0.006432657,0.000045724264,0.000038891492,0.0020836582],"genre_scores_gemma":[0.99691755,0.000014446489,0.0013664982,0.00004809625,0.00010374724,0.000863237,0.000032806543,0.000006570033,0.0006470416],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991715,0.000107723674,0.00041252768,0.00015745597,0.00003272271,0.000118045755],"domain_scores_gemma":[0.99913716,0.00007225261,0.0002523171,0.00037928447,0.00013653735,0.000022456652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006128363,0.00006774029,0.00014209803,0.000021743283,0.00010858378,0.000014278948,0.00021323707,0.00008195452,0.0000051131165],"category_scores_gemma":[0.00034552396,0.000044308857,0.00008010046,0.00003400694,0.000096621356,0.0000014222,0.000035012963,0.00002313284,0.000013446176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030334279,0.000039483137,0.00034121054,0.0026397821,0.00010096009,1.185615e-8,0.000064578155,0.000012557567,0.9406813,0.05436612,0.001217042,0.000506665],"study_design_scores_gemma":[0.00065400236,0.00016309094,0.00021395554,0.00024536386,0.00005278729,0.000009562276,0.00046128567,0.0011787628,0.94767755,0.00045526176,0.048700877,0.00018749463],"about_ca_topic_score_codex":7.56767e-7,"about_ca_topic_score_gemma":0.0000066735547,"teacher_disagreement_score":0.1647137,"about_ca_system_score_codex":0.00000626116,"about_ca_system_score_gemma":0.00003338825,"threshold_uncertainty_score":0.18068628},"labels":[],"label_agreement":null},{"id":"W2166737200","doi":"10.1080/10635150500354829","title":"Calculating the Evolutionary Rates of Different Genes: A Fast, Accurate Estimator with Applications to Maximum Likelihood Phylogenetic Analysis","year":2005,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research; McGill University","funders":"Canadian Institutes of Health Research; Fonds Québécois de la Recherche sur la Nature et les Technologies; Genome Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Akaike information criterion; Phylogenetic tree; Bayesian information criterion; Biology; Estimator; Bayesian probability; Tree (set theory); Maximum likelihood; Statistics; Data set; Sequence (biology); Algorithm; Mathematics; Computer science; Gene; Genetics; Combinatorics","score_opus":0.013407564305321024,"score_gpt":0.27044734896339256,"score_spread":0.25703978465807154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166737200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91327447,0.004418408,0.080683075,0.00027690662,0.000028260574,0.0011928816,0.000050879265,0.000005101286,0.00007001226],"genre_scores_gemma":[0.99183303,0.000039546452,0.0070355446,0.00011412382,0.000119819786,0.00079168007,0.000036258625,0.000014855281,0.000015162683],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985972,0.00017361276,0.00050637365,0.0003664856,0.00008669896,0.00026963738],"domain_scores_gemma":[0.9988319,0.0000716231,0.00026711076,0.0005967765,0.00016092401,0.00007166394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018912442,0.00021563689,0.00048486632,0.00008733961,0.00014863153,0.000012705007,0.0003064582,0.00009708128,0.000006380035],"category_scores_gemma":[0.000035530637,0.00012425882,0.00014915354,0.00027903932,0.000120928285,5.901306e-7,0.00019683405,0.000048473878,0.0000074040886],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008033408,0.00022605596,0.2071386,0.0024258806,0.004689218,6.0601883e-7,0.0005586115,0.020784969,0.7608234,0.0013073663,0.0000366809,0.0019282785],"study_design_scores_gemma":[0.004772333,0.0051612956,0.62200934,0.0018971497,0.0127115315,0.0002505883,0.0094072325,0.08324301,0.24469087,0.00956697,0.0020592315,0.004230462],"about_ca_topic_score_codex":0.0000222064,"about_ca_topic_score_gemma":0.0001331791,"teacher_disagreement_score":0.51613253,"about_ca_system_score_codex":0.000017531092,"about_ca_system_score_gemma":0.000046048477,"threshold_uncertainty_score":0.5067128},"labels":[],"label_agreement":null},{"id":"W2167241839","doi":"10.1080/10635150600863109","title":"Incorporating Allelic Variation for Reconstructing the Evolutionary History of Organisms from Multiple Genes: An Example from Rosa in North America","year":2006,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Newfoundland and Labrador","keywords":"Biology; Phylogenetics; Lineage (genetic); Evolutionary biology; Allele; Taxon; Coalescent theory; Gene; Genetics; Botany","score_opus":0.023628327024484325,"score_gpt":0.20747640514133722,"score_spread":0.1838480781168529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167241839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.968959,0.0009258922,0.029110461,0.00001583285,0.00031574897,0.0004837821,0.00016153621,0.000007889373,0.00001987193],"genre_scores_gemma":[0.9802774,0.0000033871697,0.017418899,0.00005241582,0.00016516453,0.000035400346,0.00202241,0.000007928516,0.000016982294],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99883026,0.00027017598,0.00045594867,0.00027339073,0.00005509507,0.00011510122],"domain_scores_gemma":[0.99900043,0.00012702859,0.00046340513,0.00030074746,0.00008824117,0.000020174726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015096895,0.000110356275,0.00025394672,0.000035668047,0.000059067665,0.000005633387,0.00017977093,0.0001595879,0.000018165943],"category_scores_gemma":[0.00008386646,0.00008837882,0.000052793763,0.00005756012,0.00008707737,0.0000053153794,0.00006296379,0.00004959133,0.000001303616],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008886861,0.00005919754,0.48182806,0.00052871706,0.000116684874,6.019178e-7,0.002578332,0.0037339772,0.5100032,0.00042554055,0.00012349909,0.0005133262],"study_design_scores_gemma":[0.006884806,0.0009396727,0.85814106,0.0006021115,0.0004510426,0.000029336808,0.01538963,0.06707363,0.016307196,0.02957907,0.0030520614,0.0015503692],"about_ca_topic_score_codex":0.010619495,"about_ca_topic_score_gemma":0.0043584458,"teacher_disagreement_score":0.49369597,"about_ca_system_score_codex":0.00004789062,"about_ca_system_score_gemma":0.000088184766,"threshold_uncertainty_score":0.9959689},"labels":[],"label_agreement":null},{"id":"W2167290564","doi":"10.1093/sysbio/syv043","title":"Detecting Adaptive Evolution in Phylogenetic Comparative Analysis Using the Ornstein–Uhlenbeck Model","year":2015,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"University of Hawai'i; National Science Foundation","keywords":"Phylogenetic tree; Phylogenetic comparative methods; Selection (genetic algorithm); Biology; Taxon; Evolutionary biology; Model selection; Tree (set theory); Variation (astronomy); Statistics; Computer science; Artificial intelligence; Ecology; Mathematics; Genetics","score_opus":0.14449580448698718,"score_gpt":0.3103909254621875,"score_spread":0.16589512097520032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167290564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94688755,0.0052148337,0.045259543,0.000043735592,0.00015051171,0.0004610975,0.000012809359,0.00002049125,0.0019494469],"genre_scores_gemma":[0.9983658,0.0000024190313,0.0015452893,0.000035655397,0.000023088925,0.00000809434,0.000005324206,9.4975576e-7,0.000013376351],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9979825,0.001020059,0.0004135712,0.00022833167,0.00009951376,0.000256019],"domain_scores_gemma":[0.9991203,0.0003306522,0.00022273554,0.00017863855,0.00009334811,0.000054324573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009700081,0.00013426106,0.0005413013,0.00019287849,0.00015132515,0.000011882754,0.00017304659,0.0001023367,0.000014326345],"category_scores_gemma":[0.0001304585,0.000079442834,0.00007812008,0.0006005345,0.00020358899,0.000042925865,0.00001996377,0.00013292486,0.000032472322],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000157286,0.000004699033,0.71627533,0.00010778409,0.00019929175,0.0000010060054,0.0024627387,0.28056034,0.000015694548,0.00034817596,0.0000016051664,0.000007596306],"study_design_scores_gemma":[0.0001460737,0.00006089795,0.18041171,0.000078373465,0.00019217208,0.000008217726,0.008729777,0.8084323,0.0000036040854,0.001850787,1.1412816e-7,0.00008599192],"about_ca_topic_score_codex":0.0017749188,"about_ca_topic_score_gemma":0.09918518,"teacher_disagreement_score":0.53586364,"about_ca_system_score_codex":0.00002932934,"about_ca_system_score_gemma":0.00006881205,"threshold_uncertainty_score":0.91725236},"labels":[],"label_agreement":null},{"id":"W2168198916","doi":"10.1080/10635150701397643","title":"Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":326,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"Genome Canada; Canada Research Chairs; Canadian Institute for Advanced Research","keywords":"Phylogenetic tree; Biology; Phylogenetics; Phylogenetic network; Set (abstract data type); Tree (set theory); Evolutionary biology; Genome; Inference; Scale (ratio); Data set; Taxon; Computational biology; Statistics; Genetics; Artificial intelligence; Computer science; Mathematics; Gene; Paleontology","score_opus":0.010917332693602906,"score_gpt":0.2441545392256928,"score_spread":0.2332372065320899,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168198916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98675984,0.009916617,0.00189466,0.000019159987,0.00017781352,0.00095515605,0.000004988129,0.0000066047983,0.00026515278],"genre_scores_gemma":[0.99845576,0.000059585433,0.0011937544,0.00007635138,0.00007996791,0.0000830891,0.000004305158,0.0000194723,0.000027687582],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982084,0.00021153234,0.0007294847,0.0003892011,0.00006347326,0.0003979083],"domain_scores_gemma":[0.99916375,0.00012923729,0.0002453098,0.000345127,0.000049678125,0.00006690653],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001536438,0.0002220921,0.0006330874,0.0001242744,0.0000962047,0.000017881282,0.00017357669,0.00020754331,0.0000013866714],"category_scores_gemma":[0.00028324925,0.00018118066,0.00008002061,0.000100640726,0.00010813415,8.535486e-7,0.00023310176,0.000090767455,0.000004046246],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022419828,0.000021754466,0.049454648,0.046488736,0.00012928422,0.000004287043,0.00094380014,0.00002824501,0.9027346,0.000148778,7.134851e-7,0.000022757511],"study_design_scores_gemma":[0.0092447745,0.0038928748,0.48804942,0.047380555,0.0013256996,0.0020172864,0.06858878,0.002382475,0.36157176,0.009262203,0.00014256538,0.006141612],"about_ca_topic_score_codex":0.000038645507,"about_ca_topic_score_gemma":0.0004341921,"teacher_disagreement_score":0.54116285,"about_ca_system_score_codex":0.000025640606,"about_ca_system_score_gemma":0.000018830417,"threshold_uncertainty_score":0.73883325},"labels":[],"label_agreement":null},{"id":"W2168424966","doi":"10.1093/sysbio/syp083","title":"Probabilistic Models of Chromosome Number Evolution and the Inference of Polyploidy","year":2009,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant Taxonomy and Phylogenetics","field":"Agricultural and Biological Sciences","cited_by":227,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Ploidy; Chromosome; Phylogenetics; Evolutionary biology; Phylogenetic tree; Plant evolution; Genome size; Genome; Genetics; Gene","score_opus":0.02631636513124256,"score_gpt":0.22214310945134713,"score_spread":0.19582674432010458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168424966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99824274,0.00049292395,0.0002429694,0.00015612617,0.000026304606,0.0004481269,0.000027271879,0.0000068783866,0.00035663648],"genre_scores_gemma":[0.99985915,0.000014517334,0.000062838815,0.000023139753,0.000016108015,0.000014475287,0.000004939768,1.3423761e-7,0.000004700844],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.99922216,0.00023246673,0.00031101875,0.00009598304,0.000046245266,0.000092137976],"domain_scores_gemma":[0.99919486,0.00048059624,0.00020402753,0.000054754237,0.000046408724,0.00001933541],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000312793,0.000066143584,0.00031034788,0.0000044193275,0.000032788776,0.000003949753,0.00013280252,0.00007382687,0.000011296516],"category_scores_gemma":[0.00010445547,0.000018145996,0.000038308513,0.00008367994,0.00018309856,0.000017818204,0.000027671622,0.00003828401,0.0000016787219],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109411594,0.00013399807,0.015616492,0.0032564108,0.00005917847,4.4149357e-7,0.0003968657,0.00015916387,0.20560734,0.7730396,0.0000042835964,0.0016168128],"study_design_scores_gemma":[0.0007808707,0.0008356201,0.08108209,0.0019506769,0.00014451206,0.00007556096,0.00041254007,0.020258619,0.0028917822,0.89126176,0.000005447454,0.00030050857],"about_ca_topic_score_codex":0.000086145286,"about_ca_topic_score_gemma":0.00002867351,"teacher_disagreement_score":0.20271556,"about_ca_system_score_codex":0.000004761525,"about_ca_system_score_gemma":0.000006313167,"threshold_uncertainty_score":0.07399723},"labels":[],"label_agreement":null},{"id":"W2169438965","doi":"10.1093/sysbio/syt007","title":"Paleo-Drainage Basin Connectivity Predicts Evolutionary Relationships across Three Southeast Asian Biodiversity Hotspots","year":2013,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Environment Research Council; Sight Research UK","keywords":"Biodiversity; Species richness; Biodiversity hotspot; Ecology; Climate change; Biology; Vertebrate; Phylogenetic diversity; Geography; Phylogenetic tree","score_opus":0.022538737181704994,"score_gpt":0.2312331527458279,"score_spread":0.2086944155641229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169438965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913655,0.00024482034,0.0052759936,0.000518912,0.00035206514,0.0010130053,0.00027449324,0.000043193075,0.00091203983],"genre_scores_gemma":[0.99863094,0.0000021991893,0.0008017476,0.000113494,0.00009468706,0.000042302763,0.00021291676,0.0000074210475,0.000094304465],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99821275,0.0005490163,0.00032738343,0.0004403083,0.00012458058,0.00034598343],"domain_scores_gemma":[0.9988833,0.00005398948,0.00022925816,0.00051670964,0.00018297958,0.00013375415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042050524,0.00021553146,0.00033521102,0.000057535348,0.00039697014,0.00003960215,0.00029946485,0.00046613364,0.00010934521],"category_scores_gemma":[0.00034811208,0.00019082954,0.00013782797,0.00012827503,0.00022322767,0.000011641373,0.00028240704,0.00017559258,0.000314814],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004297024,0.00006307744,0.9847011,0.0017977299,0.00021686732,0.0000032319988,0.00096545025,0.00007695031,0.009023345,0.0019341895,0.0010434568,0.00013163999],"study_design_scores_gemma":[0.0006437497,0.00012705936,0.9901018,0.00015281409,0.000060630442,0.000053187592,0.0027480489,0.00019637748,0.00034925956,0.0051666996,0.00009381626,0.00030654983],"about_ca_topic_score_codex":0.0001385654,"about_ca_topic_score_gemma":0.00012522051,"teacher_disagreement_score":0.008674086,"about_ca_system_score_codex":0.00002396997,"about_ca_system_score_gemma":0.00004642831,"threshold_uncertainty_score":0.77818024},"labels":[],"label_agreement":null},{"id":"W2169444195","doi":"10.1080/10635150500234609","title":"An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics","year":2005,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":292,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"Canada Research Chairs; Génome Québec","keywords":"Phylogenomics; Biology; Phylogenetic tree; Evolutionary biology; Phylogenetics; Inference; Context (archaeology); Coalescent theory; Clade; Genetics; Artificial intelligence; Gene; Paleontology; Computer science","score_opus":0.0210717381084557,"score_gpt":0.3263124825727729,"score_spread":0.3052407444643172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169444195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98991066,0.0013729952,0.007719948,0.00009288743,0.00016882828,0.0005052035,0.000008864905,0.0000036761755,0.00021690926],"genre_scores_gemma":[0.99771154,0.00008013298,0.0018131543,0.000124481,0.00015004884,0.000061293984,0.000035031662,0.000015353144,0.000008940937],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998425,0.00029367994,0.0006113511,0.00034763734,0.00006622629,0.0002561018],"domain_scores_gemma":[0.9991476,0.000042649444,0.00024029979,0.00043436402,0.00007268932,0.000062422136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048022022,0.00017774136,0.00046643874,0.00008030929,0.000038109152,0.000008894018,0.00020293414,0.00021862084,0.000008658918],"category_scores_gemma":[0.000049497852,0.00015235702,0.000087247885,0.000073246636,0.00008520029,0.0000014826398,0.00007634979,0.00009228505,0.000005589767],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016665754,0.00023357826,0.49506053,0.0013470527,0.00011344681,0.0000012984949,0.00019121719,0.0031251293,0.4990845,0.00013688837,0.0000056228437,0.0006840445],"study_design_scores_gemma":[0.0009791174,0.0008728436,0.9628188,0.00020469133,0.000073252755,0.00005536243,0.00027294082,0.007262953,0.026651518,0.0003974831,0.000040064842,0.00037097017],"about_ca_topic_score_codex":0.000016339676,"about_ca_topic_score_gemma":0.00033345446,"teacher_disagreement_score":0.472433,"about_ca_system_score_codex":0.0000402963,"about_ca_system_score_gemma":0.000070051814,"threshold_uncertainty_score":0.6212939},"labels":[],"label_agreement":null},{"id":"W2169997348","doi":"10.1080/106351501753462858","title":"War and Peace in Phylogenetics: A Rejoinder on Total Evidence and Consensus","year":2001,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Congruence (geometry); Phylogenetic tree; Biology; Phylogenetics; Variety (cybernetics); Evolutionary biology; Mathematics; Statistics; Genetics","score_opus":0.02497822798064529,"score_gpt":0.26696722308504667,"score_spread":0.2419889951044014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169997348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9658261,0.0331746,0.000043606156,0.00025648333,0.00008783262,0.00044693396,0.0000049608116,0.0000026712069,0.00015684516],"genre_scores_gemma":[0.9969188,0.0024187753,0.00032256418,0.00016421717,0.00005516288,0.000053089818,0.000001978059,0.000010192116,0.000055227345],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988631,0.0001997682,0.00029594626,0.0003780688,0.00004238671,0.00022070594],"domain_scores_gemma":[0.99944603,0.00011295187,0.00009029624,0.0002594354,0.000036065114,0.00005520733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000332916,0.00016294052,0.0003164659,0.000051035116,0.000048694143,0.000009150534,0.00007356001,0.00015007395,0.0000020036177],"category_scores_gemma":[0.0002536563,0.00013061105,0.000030199968,0.000045492994,0.00016255974,2.9133736e-7,0.0001525922,0.00006406526,0.0000034088348],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001637891,0.00007590118,0.23774697,0.002953002,0.00016851112,0.000023381497,0.0007410416,0.00007605223,0.7567901,0.0007168329,0.00009204716,0.0004523527],"study_design_scores_gemma":[0.0065668076,0.0076973476,0.91413623,0.008000203,0.00033483488,0.0033433852,0.006092681,0.0026409363,0.04206047,0.005429472,0.00096081576,0.0027367969],"about_ca_topic_score_codex":0.00003174222,"about_ca_topic_score_gemma":0.00006764949,"teacher_disagreement_score":0.71472967,"about_ca_system_score_codex":0.000008282251,"about_ca_system_score_gemma":0.000021624866,"threshold_uncertainty_score":0.5326164},"labels":[],"label_agreement":null},{"id":"W2170041483","doi":"10.1093/sysbio/sys025","title":"NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata","year":2012,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; University of British Columbia","funders":"FP7 People: Marie-Curie Actions; Natural Sciences and Engineering Research Council of Canada; National Evolutionary Synthesis Center; National Science Foundation","keywords":"Computer science; XML; Metadata; Python (programming language); Interoperability; Data exchange; Software; External Data Representation; File format; Software engineering; Data science; Programming language; World Wide Web","score_opus":0.08421342510478297,"score_gpt":0.3356246268713076,"score_spread":0.25141120176652465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170041483","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9770043,0.020911565,0.0013262973,0.000024763849,0.000105821906,0.00031909824,0.000080531354,0.0000015041841,0.00022614161],"genre_scores_gemma":[0.99700594,0.00036496212,0.0023927677,0.000029989038,0.000050939536,0.000017736049,0.0000965366,0.000004849218,0.00003628765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991768,0.00016032955,0.00025764806,0.000233512,0.00003311308,0.000138576],"domain_scores_gemma":[0.9991699,0.00005593804,0.00015007475,0.0005325445,0.000049015005,0.000042538566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034970272,0.000095835814,0.0003478848,0.000024538413,0.000040238847,0.000009873495,0.00013554662,0.00006983558,0.000001459854],"category_scores_gemma":[0.00010190662,0.000073524956,0.000014399755,0.0000424372,0.00013419795,0.0000034947004,0.0004981636,0.000026198695,8.5008134e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037284655,0.00005499034,0.119716525,0.0029771253,0.00054680294,2.1658792e-7,0.0007191607,0.0000051703255,0.8721659,0.003405287,0.00028921894,0.00008227583],"study_design_scores_gemma":[0.0058854055,0.0023850112,0.3679985,0.0017016203,0.0025145707,0.00055536575,0.023174044,0.0051995693,0.5755853,0.007852618,0.004818574,0.0023294047],"about_ca_topic_score_codex":0.000037924106,"about_ca_topic_score_gemma":0.000011636095,"teacher_disagreement_score":0.2965806,"about_ca_system_score_codex":0.0000016601548,"about_ca_system_score_gemma":0.000011221607,"threshold_uncertainty_score":0.29982606},"labels":[],"label_agreement":null},{"id":"W2170692702","doi":"10.1093/sysbio/syr012","title":"History Can Matter: Non-Markovian Behavior of Ancestral Lineages","year":2011,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"U.S. National Library of Medicine; National Institute of General Medical Sciences; National Institutes of Health; Université de Montréal","keywords":"Biology; Fixation (population genetics); Population; Population genetics; Evolutionary biology; Natural selection; Interspecific competition; Selection (genetic algorithm); Genetic drift; Coalescent theory; Mutation; Mutation rate; Genetics; Lineage (genetic); Effective population size; Molecular evolution; Genetic variation; Phylogenetics; Gene; Ecology","score_opus":0.019365778968222593,"score_gpt":0.2382467581779188,"score_spread":0.2188809792096962,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170692702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925115,0.0010390539,0.0028344665,0.000020109492,0.00045438696,0.00045080393,0.000027891017,0.000009791951,0.0026519927],"genre_scores_gemma":[0.99699455,0.000019250749,0.002010408,0.00013042166,0.000047717276,0.00008330668,0.000054011474,0.000012761478,0.00064759504],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99897826,0.00012333684,0.00043155544,0.00023157873,0.0000467706,0.00018848949],"domain_scores_gemma":[0.99921,0.0000074701743,0.00023683305,0.0004114207,0.0000718769,0.0000623926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019158395,0.00013428969,0.0003122799,0.00004899492,0.000018398778,0.0000016430919,0.00022570223,0.00019875135,0.00011918713],"category_scores_gemma":[0.00003432315,0.00011367962,0.00009868762,0.000029881565,0.00018620183,0.0000010583424,0.00007596602,0.000056199664,0.000018956549],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006399424,0.00034395108,0.42647412,0.009175637,0.00021161282,0.0000074408117,0.0010480784,0.00000983625,0.56018317,0.00093320664,0.0014393384,0.00010962069],"study_design_scores_gemma":[0.0036293992,0.0045960243,0.8409521,0.0026484053,0.0009905667,0.0004895612,0.0024575635,0.0018552347,0.13764086,0.0010256321,0.0012216312,0.0024929985],"about_ca_topic_score_codex":0.00010279664,"about_ca_topic_score_gemma":0.00010426149,"teacher_disagreement_score":0.4225423,"about_ca_system_score_codex":0.000025275745,"about_ca_system_score_gemma":0.000078071906,"threshold_uncertainty_score":0.46357203},"labels":[],"label_agreement":null},{"id":"W2172276705","doi":"10.1080/10635150252899743","title":"Biodiversity: The Interface Between Systematics and Conservation","year":2002,"lang":"en","type":"editorial","venue":"Systematic Biology","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Society of Systematic Biologists; Smithsonian Institution","keywords":"Systematics; Conservation biology; Biodiversity; Premise; Biology; Relevance (law); Ecology; Data science; Biodiversity conservation; Taxonomy (biology); Management science; Computer science; Epistemology; Political science; Engineering","score_opus":0.035597626975726306,"score_gpt":0.2665430152862234,"score_spread":0.23094538831049707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172276705","genre_codex":"editorial","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.067375585,0.0030224526,0.0009863366,0.004448888,0.90847844,0.005635635,0.0030674082,0.00027757435,0.0067076683],"genre_scores_gemma":[0.786299,0.00073939335,0.000114479706,0.00072736165,0.20536166,0.00064611353,0.00286311,0.00008001877,0.0031688444],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99818546,0.0004730456,0.000519108,0.00031238465,0.0002814996,0.00022850462],"domain_scores_gemma":[0.99789697,0.0010843071,0.0005148838,0.00041018566,0.000033306995,0.00006036525],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008036547,0.00023517144,0.00065444113,0.00002840917,0.00019014138,0.00007713318,0.00041833412,0.000598924,0.0032943273],"category_scores_gemma":[0.0007005714,0.00014305163,0.000069994116,0.00011600565,0.0003990794,0.00004014672,0.0004934554,0.00029621474,0.002558453],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000015133623,0.000008674889,0.004073972,0.0117111765,0.00006521784,8.384319e-7,0.00033130634,2.1715718e-7,0.000014738933,0.00009133515,0.98369634,0.000004667776],"study_design_scores_gemma":[0.0019079916,0.0005335276,0.005230279,0.013825384,0.0025442403,0.00004551256,0.017907439,0.00068317115,0.000077794575,0.0009800454,0.954059,0.002205609],"about_ca_topic_score_codex":0.0003114971,"about_ca_topic_score_gemma":0.000113578695,"teacher_disagreement_score":0.71892345,"about_ca_system_score_codex":0.00037724798,"about_ca_system_score_gemma":0.0000068864065,"threshold_uncertainty_score":0.9982182},"labels":[],"label_agreement":null},{"id":"W2340239062","doi":"10.1093/sysbio/syw033","title":"Palaeohistological Evidence for Ancestral High Metabolic Rate in Archosaurs","year":2016,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Ectotherm; Biology; Phylogenetic tree; Phylogenetics; Extant taxon; Evolutionary biology; Phylogenetic comparative methods; Context (archaeology); Vertebrate paleontology; Zoology; Paleontology; Genetics","score_opus":0.11837340133688186,"score_gpt":0.3233550163634714,"score_spread":0.20498161502658957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340239062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98095286,0.012009365,0.0024800731,0.0026707887,0.00074575946,0.00077259913,0.000043493987,0.000041363408,0.00028370312],"genre_scores_gemma":[0.9987826,0.00017606968,0.00065951084,0.00019232971,0.00005377599,0.000052482148,0.0000046796054,0.0000011259981,0.000077437355],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99829346,0.0006465959,0.0004044822,0.000272727,0.000044854878,0.00033787955],"domain_scores_gemma":[0.997119,0.0024984793,0.0001382647,0.00015690814,0.000033950237,0.000053415504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009991064,0.000120369434,0.0005061367,0.00007731536,0.00007088114,0.000005958721,0.00020161916,0.00011839607,0.00016539892],"category_scores_gemma":[0.0012429922,0.00005914115,0.00006340949,0.00009396728,0.00029071703,0.00006850333,0.000009618755,0.00005738555,0.00012139841],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040029598,0.0000054274224,0.9917884,0.00079047005,0.000023195056,0.0000030257831,0.000080144135,0.0000058621767,0.00014085902,0.006662736,0.000030697465,0.00042919454],"study_design_scores_gemma":[0.00036156172,0.00013257611,0.98752177,0.00074948947,0.000019736144,0.0000100640345,0.00006681782,0.00013530922,0.000014488093,0.010823683,0.00005897714,0.000105538486],"about_ca_topic_score_codex":0.00033179155,"about_ca_topic_score_gemma":0.012680088,"teacher_disagreement_score":0.017829735,"about_ca_system_score_codex":0.000004882327,"about_ca_system_score_gemma":0.000029154566,"threshold_uncertainty_score":0.70757866},"labels":[],"label_agreement":null},{"id":"W2418218291","doi":"10.1093/sysbio/syw044","title":"Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera","year":2016,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Lepidoptera: Biology and Taxonomy","field":"Biochemistry, Genetics and Molecular Biology","cited_by":198,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; University of Guelph","funders":"","keywords":"Monophyly; Polyphyly; Biology; Phylogenetic tree; DNA barcoding; Evolutionary biology; Intraspecific competition; Zoology; Clade; Genetics; Gene","score_opus":0.061658461051363245,"score_gpt":0.26318271441828933,"score_spread":0.2015242533669261,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2418218291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98713714,0.0008107204,0.0047483617,0.00060269755,0.00016255485,0.00055838114,0.00006371488,0.00001088639,0.0059055327],"genre_scores_gemma":[0.9982064,0.000061026836,0.00082481187,0.0002406065,0.00018400243,0.000086615924,0.000070166905,0.000014212191,0.00031215508],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974398,0.0009965284,0.0006488004,0.0005081402,0.000049472303,0.00035726483],"domain_scores_gemma":[0.9992483,0.00013752666,0.00015162858,0.0003542662,0.000037024474,0.00007125024],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008121322,0.00023646254,0.00044170688,0.00012812315,0.000043483542,0.000017005972,0.00022970306,0.00021594847,0.000035843223],"category_scores_gemma":[0.00031543113,0.0001520841,0.000065371605,0.00006753301,0.00020973451,0.0000090122085,0.00016790064,0.00009979896,0.000046517212],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014900227,0.00015016338,0.64621645,0.0008194847,0.0001450437,0.000039513216,0.00028111515,0.000018559174,0.3455828,0.0035388481,0.00003857286,0.0030204463],"study_design_scores_gemma":[0.014828422,0.0026241664,0.8853963,0.006598899,0.00011632958,0.0005566644,0.001241245,0.0005620325,0.07623986,0.00137835,0.007381718,0.0030759936],"about_ca_topic_score_codex":0.000046591525,"about_ca_topic_score_gemma":0.0004031541,"teacher_disagreement_score":0.26934296,"about_ca_system_score_codex":0.000030920313,"about_ca_system_score_gemma":0.00005861068,"threshold_uncertainty_score":0.62018096},"labels":[],"label_agreement":null},{"id":"W2536627930","doi":"10.1093/sysbio/syw096","title":"Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials","year":2016,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Guelph; Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; University of Glasgow; World Health Organization","keywords":"Epithet; Biology; Virus classification; Genus; Nomenclature; Zoology; Evolutionary biology; Genealogy; Classics; Taxonomy (biology); Genetics; Genome; History","score_opus":0.12877869987742593,"score_gpt":0.30646406490691636,"score_spread":0.17768536502949042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2536627930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98805594,0.010066399,0.00000462917,0.00094034715,0.00008378495,0.0004653545,0.00032496863,0.00001099227,0.00004756101],"genre_scores_gemma":[0.9973168,0.0025976049,0.000015688087,0.0000063526863,0.00003044934,0.000017692131,0.0000015530937,2.861601e-7,0.000013583235],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988351,0.0003409561,0.0003676758,0.00019888903,0.000098334516,0.00015904555],"domain_scores_gemma":[0.99858487,0.0010142779,0.00017258893,0.00007131016,0.000100131365,0.000056800447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006903664,0.00008977223,0.00049019314,0.000021814549,0.000037001337,0.0000034114871,0.00016428377,0.000057393256,0.000038311136],"category_scores_gemma":[0.00068423623,0.000023176055,0.000048723556,0.00006663851,0.00022323061,0.000024270415,0.00020864545,0.00002734832,0.000010834538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031003452,0.000038422688,0.008568395,0.005560722,0.000027437996,2.303398e-7,0.00019167244,1.4216164e-8,0.98168397,0.00090544997,0.000027073364,0.0029656182],"study_design_scores_gemma":[0.00045858358,0.0020006099,0.48310116,0.008546627,0.000041131203,0.0000065808863,0.0024103993,0.0000066915577,0.49930355,0.003020344,0.00076548033,0.0003388519],"about_ca_topic_score_codex":0.00007036665,"about_ca_topic_score_gemma":0.00012507707,"teacher_disagreement_score":0.48238042,"about_ca_system_score_codex":0.0000137336265,"about_ca_system_score_gemma":0.000005674812,"threshold_uncertainty_score":0.094509214},"labels":[],"label_agreement":null},{"id":"W2580191062","doi":"10.1093/sysbio/syw105","title":"Phylogenomics from Whole Genome Sequences Using aTRAM","year":2016,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phylogenomics; Genome; Coalescent theory; Biology; Phylogenetic tree; Computational biology; Gene; Tree (set theory); Phylogenetics; Genomics; Genetics; Evolutionary biology; Clade","score_opus":0.0240217731885108,"score_gpt":0.25254606674677293,"score_spread":0.22852429355826215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2580191062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98861873,0.004322714,0.0057886066,0.0001253541,0.00034902414,0.0003939458,0.00024672464,0.000007255414,0.00014766176],"genre_scores_gemma":[0.99682134,0.00011250998,0.002437695,0.00013292563,0.00033476495,0.00004134935,0.000029885174,0.000020853546,0.000068667614],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985842,0.00018285259,0.0004231194,0.00044269644,0.000054177443,0.00031294956],"domain_scores_gemma":[0.9991044,0.000055820754,0.0002082074,0.00048996,0.00007144481,0.00007016174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002441847,0.00021191587,0.0004051047,0.000035457535,0.00009402433,0.00001633996,0.0003105176,0.00020531788,0.000015025151],"category_scores_gemma":[0.000089576155,0.00013319876,0.00012182108,0.000041860705,0.00018399011,7.52084e-7,0.00022631178,0.000036870904,0.000044976052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010925635,0.000012362681,0.009099216,0.0002611264,0.00019888312,0.0000011691318,0.000062366285,0.000024707411,0.9900062,0.00024650266,0.000005660505,0.00007087895],"study_design_scores_gemma":[0.008636533,0.003654369,0.11189081,0.0047303042,0.0015446878,0.00043173885,0.0033318496,0.0010776184,0.7532852,0.09077958,0.01416909,0.006468169],"about_ca_topic_score_codex":0.00007503018,"about_ca_topic_score_gemma":0.000038339047,"teacher_disagreement_score":0.23672095,"about_ca_system_score_codex":0.000029566732,"about_ca_system_score_gemma":0.000063348794,"threshold_uncertainty_score":0.5431688},"labels":[],"label_agreement":null},{"id":"W2588053014","doi":"10.1093/sysbio/syx033","title":"A Poissonian Model of Indel Rate Variation for Phylogenetic Tree Inference","year":2017,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Indel; Poisson distribution; Multiple sequence alignment; INDEL Mutation; Phylogenetic tree; Inference; Biology; Tree (set theory); Variation (astronomy); Statistics; Evolutionary biology; Algorithm; Mathematics; Computer science; Artificial intelligence; Genetics; Sequence alignment; Combinatorics; Gene","score_opus":0.03712143683057664,"score_gpt":0.29434135492436175,"score_spread":0.2572199180937851,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588053014","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93623805,0.00052200933,0.061835606,0.00011219145,0.00016346076,0.0008063034,0.0000767629,0.000002445939,0.00024318666],"genre_scores_gemma":[0.9954213,0.00004438591,0.0040858393,0.00005145389,0.00007012419,0.00022017663,0.000014274984,0.000013179067,0.000079298174],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989793,0.00009061324,0.00040291093,0.00028739925,0.000038025144,0.00020180848],"domain_scores_gemma":[0.9985083,0.000050568695,0.00051316025,0.0007136466,0.00017541667,0.000038929058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004618599,0.00015263344,0.00039261652,0.000034817134,0.00016452603,0.000021146132,0.0003916602,0.00018301295,9.835213e-7],"category_scores_gemma":[0.00061915,0.00012523787,0.000107796994,0.000014222197,0.00012460067,7.6940137e-7,0.00019218064,0.000032674685,0.0000016005663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036896567,0.000027760067,0.0075548696,0.0020483893,0.00016192404,6.963387e-8,0.0001811309,0.0005989815,0.9858715,0.0033790832,0.000007390017,0.00013203046],"study_design_scores_gemma":[0.00699971,0.0034143901,0.23100169,0.0017862605,0.0008600379,0.00001699588,0.00042337616,0.2014879,0.42701852,0.12506038,0.00009052493,0.0018402295],"about_ca_topic_score_codex":0.000025800175,"about_ca_topic_score_gemma":0.00006803563,"teacher_disagreement_score":0.558853,"about_ca_system_score_codex":0.000007110064,"about_ca_system_score_gemma":0.000077864745,"threshold_uncertainty_score":0.51070523},"labels":[],"label_agreement":null},{"id":"W2616922639","doi":"10.1093/sysbio/syx052","title":"Crowds Replicate Performance of Scientific Experts Scoring Phylogenetic Matrices of Phenotypes","year":2017,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Crowdsourcing; Crowds; Citizen science; Replicate; Data science; Data collection; Scale (ratio); Categorization; Phylogenetic tree; Plot (graphics); Computer science; Biology; Artificial intelligence; World Wide Web; Statistics; Mathematics","score_opus":0.04205929309916296,"score_gpt":0.28019969810230005,"score_spread":0.2381404050031371,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2616922639","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948841,0.00027443698,0.000025974912,0.000030453817,0.00023865767,0.0002495706,0.000013245297,0.000010701973,0.0042728586],"genre_scores_gemma":[0.9997604,0.000020483149,0.00007174707,0.0000060937746,0.000008438906,0.0000316082,0.000003992538,0.000003984247,0.00009328955],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990847,0.000046549056,0.0003640575,0.00022065348,0.00011754947,0.00016647075],"domain_scores_gemma":[0.9986077,0.000026363821,0.0005415372,0.0007682645,0.000022004411,0.000034118973],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004475251,0.00008353327,0.0002872743,0.000029613386,0.00020844159,0.000028951614,0.0004940447,0.00005582558,0.0018651508],"category_scores_gemma":[0.00010531901,0.00006174896,0.000050328337,0.00007055593,0.0006569228,0.000062043946,0.0002862414,0.00002492615,0.0001294227],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012288267,0.0000548686,0.621953,0.005248975,0.000018727465,4.1629733e-7,0.00044137187,0.000009926623,0.37078214,0.001146014,0.000061699546,0.00027055026],"study_design_scores_gemma":[0.0004499549,0.00024188028,0.7634285,0.0016592761,0.000062706415,0.000015566482,0.0011773393,0.0011735135,0.23100673,0.00037964553,0.000104122526,0.0003007844],"about_ca_topic_score_codex":0.00008807385,"about_ca_topic_score_gemma":0.000025222584,"teacher_disagreement_score":0.14147545,"about_ca_system_score_codex":0.00005179759,"about_ca_system_score_gemma":0.0000057512134,"threshold_uncertainty_score":0.9990473},"labels":[],"label_agreement":null},{"id":"W2740432944","doi":"10.1093/sysbio/syz041","title":"Mean and Variance of Phylogenetic Trees","year":2019,"lang":"en","type":"preprint","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Simons Foundation","keywords":"Variance (accounting); Phylogenetic tree; Mathematics; Statistics; Set (abstract data type); Tree (set theory); Econometrics; Combinatorics; Computer science; Biology; Economics","score_opus":0.02740770288925074,"score_gpt":0.2447216685188819,"score_spread":0.21731396562963118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2740432944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92825556,0.061516564,0.0009488399,0.00024783346,0.0015573811,0.0011037196,0.00019580725,0.00003270842,0.006141591],"genre_scores_gemma":[0.99891305,0.00026657194,0.00059663225,0.000051474904,0.00003947878,0.0000070236283,0.00003357748,0.0000017565427,0.000090431924],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99843717,0.0005340751,0.00047093592,0.00031720742,0.00006467758,0.00017593046],"domain_scores_gemma":[0.99875396,0.00041852953,0.0004018086,0.00033786165,0.00004926901,0.000038576043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004632649,0.00017718776,0.00086328737,0.0000783487,0.000040857376,0.000008134056,0.00021881526,0.00034395652,0.0001097434],"category_scores_gemma":[0.0001015378,0.00012244118,0.00006757408,0.000041114745,0.00026299688,0.000009238401,0.000077296245,0.00018629154,0.000059344988],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007812461,0.0000053702615,0.9761006,0.02135667,0.00019226344,0.0000010679726,0.0006606313,0.0007632927,0.000019725294,0.00078114937,0.00001664262,0.00009473057],"study_design_scores_gemma":[0.00020871114,0.00015194657,0.9779611,0.0023344536,0.00015069879,0.00002462645,0.00040542355,0.0099045485,0.000007825047,0.008609373,0.000011962332,0.00022929566],"about_ca_topic_score_codex":0.0005493263,"about_ca_topic_score_gemma":0.012347464,"teacher_disagreement_score":0.0706575,"about_ca_system_score_codex":0.0000019003678,"about_ca_system_score_gemma":0.00004193982,"threshold_uncertainty_score":0.6890175},"labels":[],"label_agreement":null},{"id":"W2744971808","doi":"10.1093/sysbio/syx068","title":"Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation","year":2017,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":545,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Austrian Science Fund","keywords":"PMSF; Tree (set theory); Mixture model; Speedup; Biological system; Computer science; Mathematics; Biology; Statistics; Parallel computing; Combinatorics","score_opus":0.02829773744617561,"score_gpt":0.27984953437515164,"score_spread":0.25155179692897606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2744971808","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99216676,0.0015237561,0.0048561147,0.00008959364,0.00019149206,0.0009612587,0.00009237895,0.000012111892,0.000106527805],"genre_scores_gemma":[0.9954447,0.000051805473,0.0039402214,0.00007678654,0.00013365522,0.00019569228,0.00010449555,0.000032949487,0.000019687823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983178,0.00016807126,0.00049879384,0.0005676331,0.000076972225,0.00037075198],"domain_scores_gemma":[0.99825066,0.00001767702,0.00043661258,0.0010368852,0.00017743038,0.000080706646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035547555,0.00032691887,0.0005299348,0.000048538706,0.0004994744,0.00015184452,0.0004471402,0.00020615748,0.000004049405],"category_scores_gemma":[0.000109369976,0.00023866488,0.000107080006,0.000025801217,0.0001627064,0.0000047636436,0.00034203214,0.00008238603,0.00003030992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054829146,0.000025622474,0.04257235,0.0017169439,0.00026445327,0.0000030568165,0.00027061437,0.0023935216,0.9525114,0.00009951297,0.0000019738734,0.00008570373],"study_design_scores_gemma":[0.005756094,0.0043042027,0.08836512,0.0039538816,0.0011173921,0.00065648445,0.0009770235,0.24292645,0.6435521,0.0043173195,0.000021717662,0.0040521817],"about_ca_topic_score_codex":0.00017198715,"about_ca_topic_score_gemma":0.000479657,"teacher_disagreement_score":0.30895928,"about_ca_system_score_codex":0.000021882366,"about_ca_system_score_gemma":0.00006594689,"threshold_uncertainty_score":0.9732472},"labels":[],"label_agreement":null},{"id":"W2762917913","doi":"10.1093/sysbio/syx050","title":"Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics","year":2017,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Botany, Ecology, and Taxonomy Studies","field":"Agricultural and Biological Sciences","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of Ottawa","funders":"Division of Environmental Biology; Natural Sciences and Engineering Research Council of Canada; University of Ottawa; Division of Industrial Innovation and Partnerships; National Geographic Society; National Science Foundation","keywords":"Biology; Phylogenomics; Phylogenetic tree; Nuclear gene; NdhF; Phylogenetics; Evolutionary biology; Sanger sequencing; Clade; Genome; Genetics; Gene; DNA sequencing","score_opus":0.06314131874042796,"score_gpt":0.25752450847314073,"score_spread":0.1943831897327128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2762917913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955416,0.0015298576,0.000039558192,0.00059189537,0.00073544,0.0006487885,0.00003991195,0.000052616047,0.00082034006],"genre_scores_gemma":[0.9984692,0.00006018152,0.0009109821,0.0001143683,0.00033032667,0.00006714023,0.0000036914857,0.0000013964162,0.000042722007],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99850315,0.00023373503,0.0005340802,0.00033521888,0.000055053515,0.00033873742],"domain_scores_gemma":[0.9986855,0.00031009273,0.00063333206,0.00022918057,0.000077380835,0.000064506654],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0006480507,0.0001870429,0.00056421186,0.000018959396,0.0013497951,0.000107465465,0.00048274788,0.00019315383,0.000039543644],"category_scores_gemma":[0.0005997162,0.00007428793,0.00013029498,0.00006607315,0.0003239881,0.00008724698,0.00022380563,0.00010800081,0.000025992236],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037170626,0.00015963112,0.7319229,0.002150312,0.0006695288,0.00001552727,0.0007093911,0.000048627055,0.26000294,0.0031640155,0.00018507859,0.00093486713],"study_design_scores_gemma":[0.00048194706,0.00037790582,0.9822983,0.0007431223,0.00019728429,0.00005190193,0.0065497984,0.0034371214,0.0007895802,0.003953541,0.00043079743,0.00068869296],"about_ca_topic_score_codex":0.00009239926,"about_ca_topic_score_gemma":0.0018786336,"teacher_disagreement_score":0.2592134,"about_ca_system_score_codex":0.000053137694,"about_ca_system_score_gemma":0.000014235408,"threshold_uncertainty_score":0.9999503},"labels":[],"label_agreement":null},{"id":"W2790128323","doi":"10.1093/sysbio/syy025","title":"A növények evolúciója és osztályozása (Evolution and Systematics of Plants). — By J. Podani","year":2018,"lang":"hu","type":"article","venue":"Systematic Biology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"","keywords":"Systematics; Biology; Evolutionary biology; Zoology; Ecology; Taxonomy (biology)","score_opus":0.005011425957476383,"score_gpt":0.21683410880260381,"score_spread":0.21182268284512742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790128323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94561183,0.030475883,0.01991725,0.000119059165,0.0020029258,0.0013593455,0.00031202324,0.00003448987,0.0001672129],"genre_scores_gemma":[0.9973992,0.00035287766,0.0008083339,0.00003235844,0.0007438159,0.000040260635,0.00011706484,0.000034767996,0.0004713083],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99701726,0.00054014404,0.0012140024,0.00065224007,0.00013158997,0.00044474404],"domain_scores_gemma":[0.99808294,0.000030332994,0.000732135,0.0007678815,0.00026108196,0.00012566107],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00094153074,0.00041071413,0.0010755161,0.00013198743,0.000110297704,0.000027349734,0.00027474604,0.0006859454,0.000017754743],"category_scores_gemma":[0.00040871007,0.0003385825,0.00013094863,0.00014245872,0.00051630306,0.000006663745,0.00019559363,0.00015243319,0.000037472695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005144944,0.000084341315,0.00037885061,0.04429965,0.00037469284,5.8357045e-7,0.00030207605,0.000002912103,0.952272,0.0012011745,0.00096625625,0.00006603426],"study_design_scores_gemma":[0.0026946687,0.0044673714,0.00045746958,0.0232263,0.001311763,0.0010858614,0.0031092798,0.004225401,0.95448935,0.0010351994,0.0020466575,0.0018506541],"about_ca_topic_score_codex":0.00010661458,"about_ca_topic_score_gemma":0.0000143301295,"teacher_disagreement_score":0.051787402,"about_ca_system_score_codex":0.0000412819,"about_ca_system_score_gemma":0.00007939627,"threshold_uncertainty_score":0.9999066},"labels":[],"label_agreement":null},{"id":"W2809376980","doi":"10.1093/sysbio/syy046","title":"Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors","year":2018,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Primate Behavior and Ecology","field":"Psychology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"David Rockefeller Center for Latin American Studies, Harvard University; Université de Lausanne; Vetenskapsrådet; Stiftelsen för Strategisk Forskning; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Wenner-Gren Stiftelserna","keywords":"Biology; Evolutionary biology; Zoology","score_opus":0.04791979713982973,"score_gpt":0.325535062282071,"score_spread":0.2776152651422413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809376980","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938349,0.00045380986,0.0011942142,0.00013500056,0.0012672779,0.00070080167,0.000023728639,0.00008285741,0.0023073812],"genre_scores_gemma":[0.99751216,0.0000065282584,0.0019045476,0.000097622775,0.00018535469,0.00008420576,0.00001331602,0.000021671498,0.00017459414],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974347,0.0005592102,0.0009504531,0.0004835203,0.00010098186,0.00047116794],"domain_scores_gemma":[0.9981748,0.00042316373,0.00046761413,0.0006714009,0.00008218044,0.0001808409],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043862016,0.0002406397,0.0009907394,0.00030231685,0.000080642254,0.000014180709,0.00033439609,0.00031980837,0.0010251801],"category_scores_gemma":[0.00011862149,0.00018777305,0.00010824847,0.00026781534,0.00057507935,0.000045284076,0.00015174459,0.0001819919,0.00027227894],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026092917,0.00022650085,0.9443087,0.0022446103,0.00038858288,0.000019488425,0.011557553,1.9104802e-7,0.021267781,0.018062329,0.00035944566,0.0013039187],"study_design_scores_gemma":[0.0014399088,0.0011671853,0.977663,0.00087397755,0.00032907698,0.000028374396,0.0016772074,0.000072917304,0.0003649566,0.015961148,0.000047618014,0.00037464235],"about_ca_topic_score_codex":0.0016846358,"about_ca_topic_score_gemma":0.00031862833,"teacher_disagreement_score":0.033354316,"about_ca_system_score_codex":0.000023041384,"about_ca_system_score_gemma":0.0000385766,"threshold_uncertainty_score":0.999888},"labels":[],"label_agreement":null},{"id":"W2907514903","doi":"10.1093/sysbio/syy087","title":"Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species","year":2018,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Intramural Research Program; U.S. National Library of Medicine; National Institute of Allergy and Infectious Diseases; Science and Technology Directorate; U.S. Department of Health and Human Services; National Institutes of Health; U.S. Department of Defense; Mississippi State University; U.S. Department of Homeland Security","keywords":"Virus classification; Nomenclature; Mandate; Confusion; Biology; Taxon; Taxonomy (biology); Phylum; Virology; Zoology; Political science; Ecology; Law; Genetics; Genome; Psychology","score_opus":0.06266686887916656,"score_gpt":0.29576132557554474,"score_spread":0.23309445669637818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2907514903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99441147,0.00009146021,0.0018250415,0.001698365,0.00026369758,0.0009474706,0.000046766025,0.000012874038,0.0007028411],"genre_scores_gemma":[0.99875915,0.000006951107,0.000052415227,0.00091765187,0.00008362801,0.00013708371,0.000006100844,0.000007027411,0.000029965662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986855,0.00066571956,0.00038418185,0.000095655734,0.00007219287,0.00009677956],"domain_scores_gemma":[0.99791557,0.0011067447,0.00039300608,0.00042989914,0.00013559902,0.00001918723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006541469,0.00011921074,0.0003340801,0.000071793176,0.00030981607,0.00001520506,0.00025664835,0.000064449676,0.000036184254],"category_scores_gemma":[0.00023510281,0.00004460837,0.0000642609,0.00013789415,0.0004939614,0.000029260444,0.00014485001,0.0002964989,0.000003815271],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082697894,0.0009000074,0.21315494,0.0036768678,0.0029577834,4.804572e-7,0.0346799,0.00016506325,0.71580046,0.022030659,0.0033621269,0.0024447038],"study_design_scores_gemma":[0.0045585656,0.015946036,0.2120234,0.02180356,0.0016395906,0.0005611101,0.10887882,0.0064523006,0.57259524,0.0022059302,0.05231474,0.0010206801],"about_ca_topic_score_codex":0.0006961194,"about_ca_topic_score_gemma":0.0014028612,"teacher_disagreement_score":0.14320523,"about_ca_system_score_codex":0.000035694575,"about_ca_system_score_gemma":0.000019223058,"threshold_uncertainty_score":0.23828861},"labels":[],"label_agreement":null},{"id":"W2940467071","doi":"10.1093/sysbio/syz019","title":"Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Coalescent theory; Biology; Phylogenetic tree; Evolutionary biology; Genome; Phylogenetics; Lineage (genetic); Tree (set theory); Clade; Phylogenomics; Genetics; Gene; Mathematics","score_opus":0.035317991395442824,"score_gpt":0.3208767264789477,"score_spread":0.2855587350835049,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2940467071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936095,0.0047136345,0.00027944,0.00014607974,0.00009294892,0.0008254219,0.000059347098,0.0000016022916,0.0002720206],"genre_scores_gemma":[0.99934626,0.000051619805,0.00030576912,0.00010252202,0.00005943191,0.00006791456,0.000024000334,0.000010781451,0.000031731615],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99789757,0.0007869209,0.0006376105,0.0003213217,0.00012755637,0.00022901084],"domain_scores_gemma":[0.9983862,0.000189334,0.00034686824,0.0009286671,0.0001225217,0.00002643305],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010367446,0.00016800796,0.00055676966,0.00006457017,0.00004243303,0.000008335963,0.0007482627,0.00016647395,0.000005984677],"category_scores_gemma":[0.00012583955,0.00008859471,0.00013650565,0.00018836801,0.00028358347,0.0000010279571,0.00022367996,0.00008992619,0.000005012015],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033983124,0.00009574279,0.041407656,0.0012990712,0.00017146216,6.932703e-7,0.0010252624,0.00014913813,0.9555045,0.000292352,0.000004918031,0.000015236407],"study_design_scores_gemma":[0.0019686026,0.0037453533,0.7936719,0.0009146232,0.00043583123,0.00007954178,0.012272133,0.0013556716,0.18209898,0.0021291918,0.0005490162,0.00077916705],"about_ca_topic_score_codex":0.000103412436,"about_ca_topic_score_gemma":0.00015719903,"teacher_disagreement_score":0.7734055,"about_ca_system_score_codex":0.000006650611,"about_ca_system_score_gemma":0.00005448658,"threshold_uncertainty_score":0.36127874},"labels":[],"label_agreement":null},{"id":"W2941701986","doi":"10.1093/sysbio/syz021","title":"The Relative Importance of Modeling Site Pattern Heterogeneity Versus Partition-Wise Heterotachy in Phylogenomic Inference","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Inference; Evolutionary biology; Partition (number theory); Computational biology; Artificial intelligence; Mathematics; Computer science; Combinatorics","score_opus":0.023648317851909503,"score_gpt":0.27512067293149906,"score_spread":0.25147235507958954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2941701986","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941344,0.0031327186,0.0016096375,0.0000391362,0.000287728,0.00066829484,0.000028508175,0.000002309784,0.000097236065],"genre_scores_gemma":[0.99954045,0.00015234196,0.0000928969,0.0000365912,0.00003240134,0.00010598989,0.000019702578,0.000011202365,0.000008447068],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985568,0.00023814496,0.0005754239,0.00032130536,0.00005767192,0.00025067336],"domain_scores_gemma":[0.99896824,0.00013718088,0.00027186063,0.0005140964,0.000077792836,0.00003082799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042768044,0.00016406777,0.00036642374,0.000030602667,0.00005678366,0.000009659859,0.00022698517,0.0001346693,0.0000028789914],"category_scores_gemma":[0.0001340397,0.00011577299,0.00010870612,0.00005497868,0.000089143614,0.0000012736214,0.00019431295,0.000082748316,0.000015878762],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012515635,0.000034818626,0.6709734,0.0012005579,0.0002484067,7.699306e-7,0.00032193688,0.0033102573,0.3230577,0.00066351023,0.000001605119,0.000061839135],"study_design_scores_gemma":[0.028171338,0.012640792,0.39200118,0.0072157066,0.0009421246,0.000097481694,0.0060384,0.28627568,0.224645,0.03534956,0.0002978231,0.006324911],"about_ca_topic_score_codex":0.000048523052,"about_ca_topic_score_gemma":0.0005794979,"teacher_disagreement_score":0.28296545,"about_ca_system_score_codex":0.000021180133,"about_ca_system_score_gemma":0.000036799247,"threshold_uncertainty_score":0.47210854},"labels":[],"label_agreement":null},{"id":"W2944397307","doi":"10.1093/sysbio/syz030","title":"Whole Genome Shotgun Phylogenomics Resolves the Pattern and Timing of Swallowtail Butterfly Evolution","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Pacific Institute for Climate Solutions; Seventh Framework Programme; Centre National de la Recherche Scientifique; Agence Nationale de la Recherche; University of Alberta","keywords":"Phylogenomics; Biology; Supermatrix; Phylogenetics; Genome; Evolutionary biology; Shotgun sequencing; Phylogenetic tree; Genetics; Clade; Gene","score_opus":0.010993301796355468,"score_gpt":0.2184594449914659,"score_spread":0.20746614319511045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2944397307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98921156,0.008168892,0.0014547668,0.00013226908,0.00019237948,0.0006069666,0.000034281602,0.0000025664067,0.00019633975],"genre_scores_gemma":[0.999431,0.00006968263,0.00013838116,0.000100771715,0.000063520805,0.00003905783,0.000024389561,0.00001349358,0.00011970573],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989288,0.00016003965,0.0003768652,0.0002856532,0.0000444945,0.00020416002],"domain_scores_gemma":[0.99919885,0.000049582184,0.00021770936,0.0004437243,0.00006542367,0.00002471595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039993398,0.00015329155,0.0003414462,0.000033729157,0.00006618975,0.000011576038,0.00022362292,0.00013460463,0.0000061946585],"category_scores_gemma":[0.000040165363,0.00010261772,0.00007770009,0.000038096154,0.00013599607,6.256966e-7,0.00026746644,0.000059456535,0.000019365772],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010168201,0.0000120705745,0.038485333,0.0014811988,0.0001501677,1.4749138e-7,0.00026448135,0.000045275454,0.9593141,0.00016820358,0.000009357659,0.000059494807],"study_design_scores_gemma":[0.005904784,0.0049584773,0.7991664,0.0026234074,0.0010405792,0.0002706837,0.012450823,0.0045789843,0.15383385,0.007966422,0.0043554255,0.0028501796],"about_ca_topic_score_codex":0.00003313254,"about_ca_topic_score_gemma":0.000014786518,"teacher_disagreement_score":0.80548024,"about_ca_system_score_codex":0.000011993633,"about_ca_system_score_gemma":0.0000272588,"threshold_uncertainty_score":0.4184629},"labels":[],"label_agreement":null},{"id":"W2945040646","doi":"10.1093/sysbio/syz036","title":"Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":138,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Greek Orthodox Archdiocese of America; U.S. National Library of Medicine; National Institute of Allergy and Infectious Diseases; Biotechnology and Biological Sciences Research Council; Horizon 2020 Framework Programme; Narodowym Centrum Nauki; Narodowe Centrum Nauki; Battelle; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Helsingin Yliopisto; U.S. Department of Health and Human Services; National Institutes of Health; Directorate for Biological Sciences; Fonds De La Recherche Scientifique - FNRS; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Myoviridae; Siphoviridae; Biology; Podoviridae; Virus classification; Evolutionary biology; Genome; Taxon; Phage therapy; Taxonomy (biology); Bacteriophage; Comparative genomics; Genetics; Genomics; Gene; Zoology; Ecology","score_opus":0.024990374831967713,"score_gpt":0.3232459369902937,"score_spread":0.298255562158326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2945040646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976075,0.00003789537,0.0005811377,0.000022852477,0.00012199405,0.0014624813,0.000027290758,0.0000050819704,0.00013375502],"genre_scores_gemma":[0.999559,0.0000017089185,0.000070048496,0.000016764518,0.0000044148906,0.00011028718,0.0000039353345,0.0000034033128,0.00023047706],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992043,0.00015433104,0.0003868007,0.00014145815,0.00003892174,0.00007421673],"domain_scores_gemma":[0.99882734,0.00043527276,0.0003612562,0.00034484392,0.000019496587,0.000011812665],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003896376,0.00006366733,0.00034754173,0.000049661903,0.000038584552,0.000006010457,0.00013168159,0.000039786395,0.0010033278],"category_scores_gemma":[0.000071958675,0.000036691265,0.00012130063,0.00022890898,0.000066150904,0.00003767401,0.00005467175,0.00003096581,0.000056107136],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004250763,0.0003724684,0.15052134,0.0014893407,0.0016650853,0.0000040093714,0.0032505044,0.0003126087,0.8419088,0.00019913491,0.000024930721,0.00020925351],"study_design_scores_gemma":[0.0023262321,0.0026915616,0.8475837,0.00087812816,0.013349713,0.0005336195,0.087316,0.019508861,0.024741868,0.0002767451,0.00018885714,0.00060471904],"about_ca_topic_score_codex":0.0020644946,"about_ca_topic_score_gemma":0.0009021399,"teacher_disagreement_score":0.8171669,"about_ca_system_score_codex":0.000028209648,"about_ca_system_score_gemma":0.0000055733103,"threshold_uncertainty_score":0.9999099},"labels":[],"label_agreement":null},{"id":"W2949784409","doi":"10.1093/sysbio/syx054","title":"Conserving Phylogenetic Diversity Can Be a Poor Strategy for Conserving Functional Diversity","year":2017,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Simon Fraser University","funders":"","keywords":"Biology; Diversity (politics); Phylogenetic diversity; Phylogenetic tree; Evolutionary biology; Functional diversity; Ecology; Genetics; Anthropology; Sociology","score_opus":0.12161588159849715,"score_gpt":0.27161052569094724,"score_spread":0.14999464409245009,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949784409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99168146,0.0009629443,0.00086197397,0.0016817966,0.0008633201,0.0006537091,0.0002814988,0.000040592924,0.0029726862],"genre_scores_gemma":[0.99899393,0.000009993116,0.00019172065,0.0005414946,0.000059747625,0.0000056627005,0.000036306395,0.0000013021292,0.00015984541],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99890333,0.00022018599,0.00022732736,0.00027065107,0.000086760425,0.00029174908],"domain_scores_gemma":[0.99873936,0.0004891881,0.00029223057,0.00028927482,0.000106138905,0.000083785664],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.000511924,0.0001392464,0.00039290782,0.00004772754,0.0036491822,0.00004030543,0.00043689946,0.00013325067,0.00024746193],"category_scores_gemma":[0.00033846605,0.000110654575,0.000092403294,0.000024709865,0.00041258635,0.000053150892,0.00032765698,0.000082241684,0.000027920212],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028754906,0.0000061143273,0.9970908,0.0015495517,0.0001357515,0.0000033765955,0.00027353785,0.000043510176,0.000021637288,0.00058472366,0.00021829813,0.000043938126],"study_design_scores_gemma":[0.00047094363,0.00010734433,0.99256426,0.00014673083,0.000099799625,0.000020996535,0.0010633387,0.0030149196,0.0000054634916,0.0023484565,0.000015284662,0.00014245432],"about_ca_topic_score_codex":0.0073077916,"about_ca_topic_score_gemma":0.129611,"teacher_disagreement_score":0.12230321,"about_ca_system_score_codex":0.000009008905,"about_ca_system_score_gemma":0.000053968706,"threshold_uncertainty_score":0.9993026},"labels":[],"label_agreement":null},{"id":"W2950352437","doi":"10.1093/sysbio/syy086","title":"A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering","year":2018,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":600,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Sackler Trust; Calleva Foundation; Garfield Weston Foundation; Texas Tech University; National Science Foundation","keywords":"Biology; Set (abstract data type); Cluster analysis; Computational biology; Nuclear gene; Genetics; Gene; Statistics; Mathematics; Computer science; Genome","score_opus":0.04923635581041698,"score_gpt":0.24172732845029946,"score_spread":0.19249097263988246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950352437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928221,0.00012370916,0.0057553984,0.00005331442,0.00024398051,0.00068012817,0.00025792848,0.000044369248,0.000019075826],"genre_scores_gemma":[0.9890469,0.0000018908714,0.010598695,0.000026734719,0.0002385522,0.000017201675,0.000063216314,0.0000018189209,0.0000050284702],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9989356,0.0001465665,0.0003835208,0.00024124107,0.00006241208,0.00023068795],"domain_scores_gemma":[0.99933004,0.00022295263,0.00021696796,0.00007620679,0.00010124695,0.00005258244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023637312,0.00012677461,0.00036004893,0.000018088296,0.00018846711,0.000021279182,0.00019704524,0.00013275295,0.00010434545],"category_scores_gemma":[0.0000782778,0.000054233267,0.00008164555,0.00013045943,0.00007944381,0.00004209222,0.000101494734,0.00003489665,0.0000054302573],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024192937,0.000010163087,0.00053308194,0.0005318769,0.00005156923,7.859335e-7,0.0007416009,0.000045360983,0.9977317,0.00023698076,0.0000016076452,0.00009111677],"study_design_scores_gemma":[0.0022091384,0.0042421664,0.011024609,0.008747874,0.0006891247,0.00016377437,0.017931651,0.65093863,0.292516,0.009554749,0.00024528953,0.0017369771],"about_ca_topic_score_codex":0.0006568606,"about_ca_topic_score_gemma":0.00056416995,"teacher_disagreement_score":0.7052157,"about_ca_system_score_codex":0.000050536106,"about_ca_system_score_gemma":0.000020889793,"threshold_uncertainty_score":0.22115685},"labels":[],"label_agreement":null},{"id":"W2953324593","doi":"10.1093/sysbio/syx058","title":"Conserved Nonexonic Elements: A Novel Class of Marker for Phylogenomics","year":2017,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Biology; Phylogenetic tree; Phylogenomics; Evolutionary biology; Coalescent theory; Clade; Phylogenetics; Indel; Supermatrix; Genetics; Gene","score_opus":0.03237466006196306,"score_gpt":0.2866234409762973,"score_spread":0.2542487809143342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953324593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911428,0.0012378307,0.005350253,0.0001288374,0.00037385084,0.0011313014,0.00019421772,0.000002243219,0.00043863337],"genre_scores_gemma":[0.9948603,0.000054766395,0.004491912,0.000096631535,0.00009987351,0.0002409922,0.000029415363,0.000017893964,0.000108225126],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987883,0.000058085352,0.0005516414,0.00030757778,0.000039976352,0.00025441902],"domain_scores_gemma":[0.99823916,0.00005373247,0.0006473155,0.0008511176,0.00016709314,0.000041583506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005473718,0.00017060705,0.00048514278,0.000028202676,0.00017762448,0.00001990391,0.00046406902,0.00017543846,0.0000033914214],"category_scores_gemma":[0.00041143934,0.0001411204,0.00017159017,0.000012214117,0.00021600093,5.5172325e-7,0.00029804124,0.000035374836,0.0000024848227],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007355283,0.0000546154,0.02724546,0.0032985741,0.00047664595,1.5478406e-7,0.00003797794,0.000005918003,0.9662016,0.0025138257,0.00004826903,0.000043416625],"study_design_scores_gemma":[0.02366453,0.0066792965,0.2031778,0.0036893056,0.0017741418,0.00015096959,0.0022534695,0.0066062137,0.72089815,0.015550844,0.012067718,0.0034875504],"about_ca_topic_score_codex":0.000023153438,"about_ca_topic_score_gemma":0.00005877004,"teacher_disagreement_score":0.24530342,"about_ca_system_score_codex":0.000010636945,"about_ca_system_score_gemma":0.000066523855,"threshold_uncertainty_score":0.5754723},"labels":[],"label_agreement":null},{"id":"W2962711259","doi":"10.1093/sysbio/syz049","title":"Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Institute for Chemical Research, Kyoto University; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Canon Foundation in Europe","keywords":"Phylogenetic tree; Biology; Evolutionary biology; Graph; Computational phylogenetics; Tree (set theory); Phylogenetics; Computational biology; Combinatorics; Phylogenetic network; Mathematics; Genetics; Gene","score_opus":0.012957706965360579,"score_gpt":0.2231609747301397,"score_spread":0.21020326776477913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2962711259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9623531,0.0024073601,0.031742338,0.000036736135,0.00049902877,0.0020833106,0.000047777416,0.00001244652,0.00081790314],"genre_scores_gemma":[0.9823373,0.000032155036,0.016570374,0.00014064868,0.00014423246,0.00055444264,0.00010275052,0.000031690655,0.00008641187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981589,0.0002006177,0.00053821364,0.0006401682,0.000068869085,0.0003932643],"domain_scores_gemma":[0.9988784,0.00006639372,0.00022707904,0.0006202574,0.00013680097,0.00007105958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000480227,0.00027987026,0.00057158316,0.00010688157,0.00010396712,0.000019992402,0.00027208947,0.00030009172,0.0000055395376],"category_scores_gemma":[0.00006586648,0.00023103203,0.0003021295,0.00011318653,0.00014840788,6.9948214e-7,0.000084708074,0.000070218026,0.000008919099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008017781,0.000073317264,0.064565785,0.0058621,0.00025206505,1.206725e-7,0.00006982515,0.00047819118,0.92786044,0.0003984034,0.00003350085,0.0003260465],"study_design_scores_gemma":[0.02429386,0.014405357,0.07057631,0.0035418898,0.0021733083,0.0005827502,0.009685497,0.039039444,0.7981052,0.028945966,0.0014910239,0.007159439],"about_ca_topic_score_codex":0.000011566087,"about_ca_topic_score_gemma":0.000012350274,"teacher_disagreement_score":0.12975532,"about_ca_system_score_codex":0.000013521276,"about_ca_system_score_gemma":0.000058688765,"threshold_uncertainty_score":0.94212127},"labels":[],"label_agreement":null},{"id":"W2963804890","doi":"10.1093/sysbio/syz028","title":"An Annealed Sequential Monte Carlo Method for Bayesian Phylogenetics","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bayesian Methods and Mixture Models","field":"Computer Science","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Simon Fraser University","funders":"Western Canada Research Grid; Compute Canada","keywords":"Monte Carlo method; Bayesian probability; Markov chain Monte Carlo; Biology; Statistical physics; Phylogenetics; Bayesian inference; Evolutionary biology; Statistics; Econometrics; Mathematics; Physics; Genetics","score_opus":0.019176377347566196,"score_gpt":0.3297625274541846,"score_spread":0.3105861501066184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2963804890","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009173788,0.0003412639,0.9871039,0.0001869398,0.0010308484,0.0018300691,0.000012817642,0.00011134528,0.00020903446],"genre_scores_gemma":[0.45885685,0.0000010530326,0.54069656,0.00020033927,0.00006595652,0.00010947727,0.000002007799,0.000010025393,0.000057696725],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99700075,0.0013351962,0.0005406339,0.00060894055,0.00010050883,0.00041395923],"domain_scores_gemma":[0.9979622,0.0003285496,0.0002555279,0.0011867842,0.00013540815,0.00013156615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019342307,0.00021904115,0.0007244438,0.00010923214,0.00007124055,0.000083853745,0.0010286438,0.0002491477,0.000008241336],"category_scores_gemma":[0.0000657366,0.00016468365,0.00016649535,0.00014932986,0.00002991267,0.00010732058,0.00013474101,0.000104927996,0.00001762886],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034537214,0.00014484276,0.0011181791,0.019336596,0.00031093723,0.000008802937,0.0029556218,0.00073149055,0.11140391,0.85103405,0.00008498744,0.012836061],"study_design_scores_gemma":[0.0005427019,0.0004747286,0.000058292833,0.00028524006,0.000046141373,0.00005107976,0.000036794136,0.92480123,0.0027044476,0.07067661,0.000033238244,0.0002894711],"about_ca_topic_score_codex":0.000028146753,"about_ca_topic_score_gemma":0.00001003087,"teacher_disagreement_score":0.92406976,"about_ca_system_score_codex":0.000029985878,"about_ca_system_score_gemma":0.0000730334,"threshold_uncertainty_score":0.6715604},"labels":[],"label_agreement":null},{"id":"W2969829031","doi":"10.1093/sysbio/syz055","title":"A General and Efficient Algorithm for the Likelihood of Diversification and Discrete-Trait Evolutionary Models","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of Oregon","keywords":"Phylogenetic tree; Macroevolution; Trait; Diversification (marketing strategy); Computer science; Tree (set theory); Biology; Algorithm; Mathematics","score_opus":0.017055602633739113,"score_gpt":0.22857458953529097,"score_spread":0.21151898690155185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969829031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9304044,0.020090643,0.046255693,0.0005310232,0.00037048478,0.0015424334,0.00025501635,0.00001643958,0.0005338666],"genre_scores_gemma":[0.9972609,0.00004509314,0.0025791824,0.000035795652,0.000016849539,0.000010367399,0.000018931221,7.528564e-7,0.00003211282],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9994173,0.00010487497,0.0001825178,0.00013834593,0.000043076485,0.00011387032],"domain_scores_gemma":[0.9993139,0.0004260943,0.000101417354,0.000097005555,0.00003835036,0.00002321452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030339803,0.000064132844,0.00020283187,0.000029602881,0.00010776399,0.0000046566815,0.00006788503,0.000055720866,0.000015040232],"category_scores_gemma":[0.00002198884,0.000035398127,0.000026343687,0.00003590048,0.00016408342,0.00002273904,0.000014443313,0.000031808802,0.000004059224],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006682179,0.00003369506,0.9515616,0.008139721,0.0004642508,4.0927276e-7,0.0035246052,0.004475557,0.00021714528,0.02371502,0.00011335859,0.0076877857],"study_design_scores_gemma":[0.00020114485,0.00009158968,0.32549942,0.000075432654,0.000039888768,0.000008978725,0.0007957436,0.6706845,0.0000014508028,0.0025523982,0.0000043711193,0.00004506732],"about_ca_topic_score_codex":0.0002800686,"about_ca_topic_score_gemma":0.00030541,"teacher_disagreement_score":0.666209,"about_ca_system_score_codex":0.0000016591343,"about_ca_system_score_gemma":0.000010822063,"threshold_uncertainty_score":0.14434937},"labels":[],"label_agreement":null},{"id":"W2976225444","doi":"10.1093/sysbio/syz062","title":"Interrogating Genomic-Scale Data for Squamata (Lizards, Snakes, and Amphisbaenians) Shows no Support for Key Traditional Morphological Relationships","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":318,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo; National Science Foundation","keywords":"Squamata; Biology; Phylogenetic tree; Evolutionary biology; Clade; Phylogenetics; Genomics; Supermatrix; Genome; Zoology; Genetics; Gene","score_opus":0.08296987275519489,"score_gpt":0.2704782234482174,"score_spread":0.18750835069302252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2976225444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97103363,0.00011049827,0.01968747,0.0005796143,0.0007672582,0.0041208356,0.0015913964,0.000071737726,0.0020375482],"genre_scores_gemma":[0.9796097,0.000002810384,0.01783411,0.00023685448,0.00010654345,0.000259128,0.0012461799,0.000016074226,0.0006885646],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9981303,0.00024809537,0.00057978375,0.00065023167,0.00006886864,0.0003227176],"domain_scores_gemma":[0.9982746,0.0007554456,0.0002491718,0.0006099852,0.000016744136,0.00009401398],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013308106,0.00017869443,0.00048260533,0.000032599648,0.00015423665,0.000021352298,0.0004999933,0.00028803785,0.00110423],"category_scores_gemma":[0.00039961253,0.00012742291,0.00007637262,0.000041221116,0.000306483,0.00010323825,0.00038198679,0.00012635865,0.00039929032],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060334237,0.0005859093,0.6980056,0.022094311,0.00045082558,0.0000127302255,0.0034289183,0.00025110305,0.20945433,0.040063858,0.024350742,0.0006983165],"study_design_scores_gemma":[0.02170583,0.012833446,0.24509035,0.004318486,0.0015288168,0.005084942,0.015903726,0.54550093,0.0011085804,0.06971757,0.070275016,0.006932288],"about_ca_topic_score_codex":0.00001109198,"about_ca_topic_score_gemma":0.00011035376,"teacher_disagreement_score":0.5452499,"about_ca_system_score_codex":0.00006818211,"about_ca_system_score_gemma":0.00002033643,"threshold_uncertainty_score":0.9998089},"labels":[],"label_agreement":null},{"id":"W2987941611","doi":"10.1093/sysbio/syz075","title":"A Phenotype–Genotype Codon Model for Detecting Adaptive Evolution","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Nonsynonymous substitution; Biology; Adaptation (eye); Phenotype; Trait; Evolutionary biology; Molecular evolution; Selection (genetic algorithm); Genetics; Neutral theory of molecular evolution; Null model; Natural selection; Gene; Phylogenetics; Ecology; Genome; Machine learning; Computer science","score_opus":0.020009133841056483,"score_gpt":0.244702027844687,"score_spread":0.22469289400363052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2987941611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8332984,0.0019017048,0.162908,0.00001847738,0.0002932909,0.001241916,0.00002748044,0.0000069345724,0.0003037948],"genre_scores_gemma":[0.99498785,0.000008395466,0.0044094305,0.00006888584,0.000100209625,0.00019328765,0.000015613685,0.0000195159,0.0001967936],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.998996,0.00008252535,0.00029276908,0.00033817638,0.000040219984,0.00025028482],"domain_scores_gemma":[0.99929756,0.00004745267,0.00016763584,0.00032068798,0.00013206524,0.00003459019],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032757418,0.00015321888,0.0003195182,0.00003464032,0.000074553405,0.000007899768,0.0001490248,0.00017737287,0.0000025543368],"category_scores_gemma":[0.00011934291,0.00012712687,0.00010880069,0.000038505794,0.000037123384,5.1656104e-7,0.00011344489,0.00004466901,0.000022576482],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013356189,0.000022706063,0.004056758,0.0024847062,0.00023007652,8.17827e-8,0.00021084523,0.003375488,0.9822964,0.0070952605,0.000022981509,0.0000711497],"study_design_scores_gemma":[0.00430549,0.004411629,0.0045853993,0.0012176214,0.0004728649,0.000029132298,0.0022360866,0.8791077,0.05814172,0.04359136,0.00017975605,0.0017212187],"about_ca_topic_score_codex":0.0000138482765,"about_ca_topic_score_gemma":0.000042207368,"teacher_disagreement_score":0.92415464,"about_ca_system_score_codex":0.000026376154,"about_ca_system_score_gemma":0.000057300625,"threshold_uncertainty_score":0.5184083},"labels":[],"label_agreement":null},{"id":"W3007669493","doi":"10.1093/sysbio/syaa013","title":"Exploration of Plastid Phylogenomic Conflict Yields New Insights into the Deep Relationships of Leguminosae","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":323,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Natural Science Foundation of China","keywords":"Chloroplast DNA; Biology; Phylogenetic tree; Phylogenomics; Evolutionary biology; Clade; Caesalpinioideae; Phylogenetics; NdhF; Taxon; Molecular clock; Fabaceae; Paleontology; Genetics; Ecology; Gene","score_opus":0.10083181722388404,"score_gpt":0.2166505558758479,"score_spread":0.11581873865196385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007669493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967432,0.00053559925,0.0008245939,0.0013894025,0.00007126439,0.00028770632,0.000007667229,0.000014127162,0.00012645045],"genre_scores_gemma":[0.9997403,0.00002072473,0.000048829002,0.00007724967,0.00006312283,0.000004250908,0.000036647234,2.3018805e-7,0.000008624209],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991721,0.00028777754,0.00029755064,0.000110092544,0.00006009883,0.00007240888],"domain_scores_gemma":[0.9991992,0.00044011598,0.00023615269,0.000040680807,0.000041124713,0.00004268624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016362182,0.00006452534,0.00022725595,0.000009308273,0.00009974693,0.000005055358,0.00018487533,0.00011705723,0.000025555482],"category_scores_gemma":[0.00029533583,0.000021464652,0.000052214542,0.00014539679,0.00007070276,0.000072450865,0.000051663203,0.00007990332,0.000028002183],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086540334,0.000036877365,0.016934218,0.0018650182,0.00007770192,8.003163e-7,0.020059811,0.00027317047,0.9417971,0.01817264,0.00040428177,0.0002918544],"study_design_scores_gemma":[0.002866198,0.0072199567,0.6410818,0.005355556,0.0011366581,0.000045560944,0.09637199,0.03629526,0.12946062,0.07393178,0.0041931714,0.0020414128],"about_ca_topic_score_codex":0.00023963446,"about_ca_topic_score_gemma":0.00039096418,"teacher_disagreement_score":0.81233644,"about_ca_system_score_codex":0.000007973025,"about_ca_system_score_gemma":0.000010996979,"threshold_uncertainty_score":0.09028526},"labels":[],"label_agreement":null},{"id":"W3010730509","doi":"10.1093/sysbio/syaa020","title":"Evaluating the Performance of Probabilistic Algorithms for Phylogenetic Analysis of Big Morphological Datasets: A Simulation Study","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Inference; Metric (unit); Probabilistic logic; Sampling (signal processing); Bayesian probability; Tree (set theory); Computer science; Phylogenetic tree; Benchmark (surveying); Bayesian network; Artificial intelligence; Statistics; Machine learning; Data mining; Biology; Mathematics","score_opus":0.202585874019112,"score_gpt":0.3762723460564108,"score_spread":0.1736864720372988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010730509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99513316,0.0006575372,0.0023461631,0.00007651264,0.00006775897,0.0013727009,0.0003224051,0.000008287282,0.000015447575],"genre_scores_gemma":[0.9991519,0.0000026715304,0.00061300007,0.000054641187,0.000020481559,0.000027296805,0.00012832026,8.2280553e-7,9.07719e-7],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.998386,0.00062037614,0.0005746418,0.00019640649,0.00010226179,0.00012030838],"domain_scores_gemma":[0.9978183,0.0015119909,0.00036229158,0.00019266063,0.00008977862,0.000024972282],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010851918,0.000086931585,0.0005591582,0.000058632148,0.00008806814,0.000003395294,0.00019818357,0.000049791597,0.00004240143],"category_scores_gemma":[0.00096194196,0.000045584224,0.000079149315,0.0003985005,0.00017249575,0.0000121722605,0.000018997434,0.000045739707,0.000003322667],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005006255,0.00002859387,0.7920213,0.0019279545,0.0005530055,2.0628369e-7,0.0009071315,0.20410466,0.00006320597,0.00001417263,0.000001198742,0.00032854802],"study_design_scores_gemma":[0.00015406263,0.0012637842,0.34533322,0.000028290227,0.00071228796,5.618676e-7,0.0006403522,0.6518001,0.0000023981165,0.000030016323,2.7992922e-7,0.000034641933],"about_ca_topic_score_codex":0.000078719575,"about_ca_topic_score_gemma":0.0007301681,"teacher_disagreement_score":0.44769543,"about_ca_system_score_codex":0.0000016455866,"about_ca_system_score_gemma":0.00001848708,"threshold_uncertainty_score":0.18588707},"labels":[],"label_agreement":null},{"id":"W3014406242","doi":"10.1093/sysbio/syaa029","title":"Comparative Phylogenetics of <i>Papilio</i> Butterfly Wing Shape and Size Demonstrates Independent Hindwing and Forewing Evolution","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Morphological variations and asymmetry","field":"Mathematics","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Burman University","funders":"National Museum of Natural History; Field Museum; American Museum of Natural History; Agence Nationale de la Recherche; National Science Foundation","keywords":"Mimicry; Batesian mimicry; Biology; Wing; Butterfly; Morphometrics; Intraspecific competition; Heliconius; Aposematism; Evolutionary biology; Lepidoptera genitalia; Predation; Zoology; Ecology; Predator","score_opus":0.0694885400819387,"score_gpt":0.29636397375141343,"score_spread":0.22687543366947474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014406242","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9654961,0.0009959051,0.03249461,0.0002049296,0.00004074826,0.0005556963,0.000013040913,0.000029613744,0.00016934895],"genre_scores_gemma":[0.9838395,0.0000065464305,0.01599076,0.00009632522,0.00003387893,0.000021947055,0.0000018030355,0.0000071402706,0.0000020786922],"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9985954,0.00028507225,0.0006120395,0.00025059583,0.000086905464,0.00016994932],"domain_scores_gemma":[0.99820507,0.0011902392,0.00033975512,0.0001240885,0.00006329417,0.00007758201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044289432,0.00015512983,0.0006926355,0.000032157903,0.000082285376,0.000022067685,0.00009845107,0.00014577831,0.000019920171],"category_scores_gemma":[0.00061306515,0.00011412286,0.000045886496,0.0001233999,0.000117990116,0.00004084916,0.00014060413,0.00012883486,0.0000019256197],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006863924,0.00021313048,0.21048722,0.05065492,0.0009351624,0.000014425118,0.009659631,0.00004750525,0.46452376,0.26306796,0.000083915096,0.00024375485],"study_design_scores_gemma":[0.0061952244,0.0030839762,0.19126128,0.009900888,0.0018972128,0.0004129969,0.035386987,0.23165981,0.041248895,0.4767484,0.0000085154325,0.0021958065],"about_ca_topic_score_codex":0.000007818592,"about_ca_topic_score_gemma":0.0000024435817,"teacher_disagreement_score":0.42327484,"about_ca_system_score_codex":0.000015641102,"about_ca_system_score_gemma":0.000017504917,"threshold_uncertainty_score":0.46537948},"labels":[],"label_agreement":null},{"id":"W3020088962","doi":"10.1093/sysbio/syaa028","title":"The Dynamics of Bird Diversity in the New World","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Ecology and Vegetation Dynamics Studies","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Danmarks Grundforskningsfond; Grantová Agentura České Republiky; National Research Foundation; European Commission; Univerzita Karlova v Praze","keywords":"Biology; Diversity (politics); Evolutionary biology; Dynamics (music); Ecology; Anthropology; Sociology","score_opus":0.021882931076237778,"score_gpt":0.2345377168721102,"score_spread":0.2126547857958724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3020088962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9467039,0.00034403882,0.005752939,0.03990909,0.0002540894,0.0010660309,0.0000036628178,0.000034302026,0.0059319385],"genre_scores_gemma":[0.99930346,0.000006981654,0.00007225439,0.0005038717,0.0000062752993,0.000008503552,5.027686e-7,0.0000015488556,0.00009661516],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993136,0.0002622451,0.0001940512,0.00008596065,0.000049737162,0.00009440092],"domain_scores_gemma":[0.99929017,0.00047065516,0.00010904197,0.000111296744,0.000003199904,0.000015640295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043725705,0.000046724057,0.0001455927,0.000009237773,0.0001612114,0.0000031482957,0.00031947016,0.000030584306,0.000029829765],"category_scores_gemma":[0.00016050595,0.000022653176,0.00002851212,0.00017076505,0.00021264628,0.00001516359,0.0003595595,0.00007445738,0.00007947748],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005078558,0.000008656658,0.946879,0.00030714093,0.000017459535,7.6478455e-7,0.0035531512,0.00020228016,0.000014371347,0.048798747,0.00018035098,0.000032988344],"study_design_scores_gemma":[0.00049557426,0.00017846585,0.8553722,0.00015941157,0.00006607298,0.0000050478848,0.0071759834,0.0745423,0.0000065671743,0.06178727,0.000045082787,0.00016602446],"about_ca_topic_score_codex":0.00023166968,"about_ca_topic_score_gemma":0.026950669,"teacher_disagreement_score":0.09150681,"about_ca_system_score_codex":0.00002847072,"about_ca_system_score_gemma":0.000004308958,"threshold_uncertainty_score":0.990805},"labels":[],"label_agreement":null},{"id":"W3021325701","doi":"10.1093/sysbio/syaa034","title":"Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":224,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Museum of Comparative Zoology, Harvard University; Australian Research Council; Yale University; Secretaría de Educación Superior, Ciencia, Tecnología e Innovación; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; National Centre for Biological Sciences; Society of Systematic Biologists; Florida Museum of Natural History; Universidade de Brasília; National Science Foundation; Systematics Association; University of Kentucky; Harvard University; Louisiana State University","keywords":"Biology; Phylogenomics; Amphibian; Phylogenetic tree; Monophyly; Phylogenetics; Evolutionary biology; Supertree; Lineage (genetic); Ecology; Clade; Gene; Genetics","score_opus":0.02488405072616205,"score_gpt":0.22883539866569227,"score_spread":0.20395134793953024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021325701","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952872,0.00042335183,0.000774693,0.0013066437,0.0001121164,0.0008110357,0.00001345929,0.000012292196,0.0012592181],"genre_scores_gemma":[0.9972452,0.000014036063,0.00056982157,0.0020279426,0.000056600555,0.00005469576,0.000005707872,0.0000071690342,0.000018823537],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998044,0.0005974232,0.0006564646,0.00033037158,0.000098499775,0.00027322883],"domain_scores_gemma":[0.99905777,0.00015169472,0.00031654944,0.00038116358,0.000005126185,0.00008768318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006423911,0.00014608966,0.0005320721,0.000023360246,0.000038888844,0.0000058541623,0.00056941976,0.00011506048,0.00007884994],"category_scores_gemma":[0.00023859828,0.00008167295,0.000093123344,0.0002302558,0.00039795716,0.000022710707,0.00019094476,0.000103175764,0.00016043417],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047269456,0.00012559199,0.50608426,0.0024836427,0.000039402996,0.000011917068,0.004772068,0.00021251914,0.48314297,0.0021750848,0.00056507194,0.00034017977],"study_design_scores_gemma":[0.002367163,0.0016235501,0.97386616,0.0008732731,0.00011263167,0.0001047817,0.0053922557,0.005034272,0.0051340316,0.004207685,0.00031572094,0.0009684534],"about_ca_topic_score_codex":0.000051276595,"about_ca_topic_score_gemma":0.0002686479,"teacher_disagreement_score":0.47800896,"about_ca_system_score_codex":0.000047020323,"about_ca_system_score_gemma":0.000016967022,"threshold_uncertainty_score":0.3330526},"labels":[],"label_agreement":null},{"id":"W3031878336","doi":"10.1093/sysbio/syaa041","title":"The Origin of the Legumes is a Complex Paleopolyploid Phylogenomic Tangle Closely Associated with the Cretaceous–Paleogene (K–Pg) Mass Extinction Event","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":169,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Universität Zürich; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Extinction event; Tangle; Biology; Paleogene; Paleontology; Extinction (optical mineralogy); Event (particle physics); Cretaceous; Evolutionary biology; Astrophysics; Mathematics; Biological dispersal; Demography; Physics","score_opus":0.03575032589083234,"score_gpt":0.20440627967210595,"score_spread":0.16865595378127363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3031878336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98986495,0.00083202287,0.000039552706,0.008158514,0.00011647781,0.00067086506,0.00012968045,0.00002869542,0.00015922793],"genre_scores_gemma":[0.99938154,0.000024647405,0.0000055997352,0.0004080456,0.00007138578,0.00002060021,0.000024358073,7.4712483e-7,0.000063089545],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99851304,0.00066912815,0.00026970074,0.00018375092,0.00014883984,0.00021554512],"domain_scores_gemma":[0.9989299,0.00047371798,0.00039706563,0.000093836665,0.00006811701,0.000037333786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045218994,0.00012525212,0.0002759947,0.000004080352,0.00053276453,0.000027309266,0.00047569154,0.000100559446,0.00006496995],"category_scores_gemma":[0.00010115619,0.000028685754,0.00012321248,0.00023171035,0.00020198051,0.000023392457,0.000085415704,0.0001108434,0.000024001225],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000298592,0.00010535829,0.10077539,0.0009954221,0.00073367334,0.0000037759328,0.002114146,0.000092414695,0.89101577,0.0007141985,0.0025737407,0.0005775208],"study_design_scores_gemma":[0.0017936435,0.0031795802,0.91497856,0.0019118718,0.0012224894,0.00011988784,0.02471996,0.013195114,0.016422175,0.0028005326,0.018410686,0.0012455111],"about_ca_topic_score_codex":0.000031586696,"about_ca_topic_score_gemma":0.0005045276,"teacher_disagreement_score":0.8745936,"about_ca_system_score_codex":0.000031742886,"about_ca_system_score_gemma":0.000013778701,"threshold_uncertainty_score":0.40976477},"labels":[],"label_agreement":null},{"id":"W3042819058","doi":"10.1093/sysbio/syaa055","title":"On the Effect of Asymmetrical Trait Inheritance on Models of Trait Evolution","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Université de Lausanne; Vetenskapsrådet; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Trait; Cladogenesis; Biology; Evolutionary biology; Inheritance (genetic algorithm); Population; Genetic algorithm; Range (aeronautics); Genetic architecture; Phylogenetic tree; Quantitative trait locus; Genetics; Gene; Clade","score_opus":0.03679472409994442,"score_gpt":0.23670239516650912,"score_spread":0.1999076710665647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042819058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98167366,0.0019649954,0.0029468457,0.0014438502,0.00019572808,0.0007706935,0.00009676508,0.000024381157,0.010883066],"genre_scores_gemma":[0.9997236,0.000003707764,0.000047853464,0.00018685187,0.000019691484,0.000006980152,0.0000047692824,0.0000012018505,0.0000053430085],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983349,0.00088097714,0.00037648127,0.00015845282,0.00011329195,0.00013591179],"domain_scores_gemma":[0.99743897,0.0021577855,0.00020692714,0.0001313745,0.000026469921,0.000038456008],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053994893,0.000106790976,0.0005094984,0.0000510146,0.000052012496,0.0000020837917,0.00018269404,0.00010180089,0.00008051377],"category_scores_gemma":[0.0007173963,0.00005337192,0.00009484412,0.00023232639,0.00018855395,0.000018610142,0.000005979586,0.000114574716,0.000029772007],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012731871,0.000083707986,0.6599203,0.026466673,0.0007379064,0.0000059255813,0.0034726826,0.013415989,0.0005246569,0.29181036,0.0010672772,0.0012213368],"study_design_scores_gemma":[0.0019904936,0.016528783,0.7294476,0.002663872,0.0002558588,0.000019402767,0.0012487811,0.21731469,0.0006268213,0.029441576,0.000012814727,0.00044932435],"about_ca_topic_score_codex":0.00010219109,"about_ca_topic_score_gemma":0.00027985947,"teacher_disagreement_score":0.26236877,"about_ca_system_score_codex":0.0000033732256,"about_ca_system_score_gemma":0.000011523931,"threshold_uncertainty_score":0.21764438},"labels":[],"label_agreement":null},{"id":"W3046121073","doi":"10.1093/sysbio/syaa059","title":"Investigating Morphological Complexes Using Informational Dissonance and Bayes Factors: A Case Study in Corbiculate Bees","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Natural Sciences and Engineering Research Council of Canada; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo; National Science Foundation","keywords":"Biology; Phylogenetic tree; Eusociality; Bayes' theorem; Evolutionary biology; Cognitive dissonance; Bayes factor; Variation (astronomy); Bayesian probability; Trait; Phylogenetics; Phylogenetic comparative methods; Artificial intelligence; Ecology; Computer science; Hymenoptera; Genetics","score_opus":0.18911670673875222,"score_gpt":0.2827456783479896,"score_spread":0.09362897160923736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046121073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990465,0.00019005785,0.000004348589,0.00019411815,0.000012880619,0.0004759016,0.000035705078,0.000031885593,0.000008611995],"genre_scores_gemma":[0.9997323,0.0000023750013,0.00008504321,0.00011853996,0.00003471429,0.000016992257,0.000009172559,3.812051e-7,4.745445e-7],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99902606,0.0001850223,0.0003771575,0.00018276605,0.00006362896,0.00016538474],"domain_scores_gemma":[0.99939346,0.0003676035,0.00014275963,0.000012527833,0.000021447502,0.00006221233],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018457678,0.00012616822,0.000392336,0.0000082760625,0.000166699,0.000034791363,0.00008489074,0.000057389516,0.0000075392604],"category_scores_gemma":[0.00022352852,0.00004249218,0.000027573114,0.00014242876,0.00009213967,0.00006833077,0.0001519419,0.00008398791,0.0000019570718],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000035315816,0.000028293065,0.9587339,0.00045918245,0.00001719166,0.000115391056,0.0023686842,0.000009187736,0.038081184,0.00014754609,0.0000016448882,0.000034249046],"study_design_scores_gemma":[0.00020447165,0.0004522834,0.9610383,0.00042634975,0.000019848549,0.00063095964,0.028811265,0.007844544,0.000046323097,0.00031384558,0.0000021746832,0.00020961827],"about_ca_topic_score_codex":0.00074461696,"about_ca_topic_score_gemma":0.0016519874,"teacher_disagreement_score":0.038034864,"about_ca_system_score_codex":0.000008609501,"about_ca_system_score_gemma":0.0000028539366,"threshold_uncertainty_score":0.17327806},"labels":[],"label_agreement":null},{"id":"W3048988327","doi":"10.1093/sysbio/syaa062","title":"Formal Links between Feature Diversity and Phylogenetic Diversity","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Phylogenetic tree; Phylogenetic diversity; Optimal distinctiveness theory; Feature (linguistics); Diversity (politics); Biodiversity; Tree (set theory); Biology; Value (mathematics); Shapley value; Evolutionary biology; Mathematics; Combinatorics; Ecology; Game theory; Statistics; Mathematical economics; Sociology","score_opus":0.07673573634488286,"score_gpt":0.20232547497130673,"score_spread":0.12558973862642386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048988327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99693435,0.00057332317,0.000010354417,0.0020220382,0.000021077347,0.00022199906,0.000064315915,0.000040409363,0.00011214814],"genre_scores_gemma":[0.9994439,0.000021370923,0.00002033431,0.0003356351,0.00015462338,0.000002311245,0.00001006572,2.1351315e-7,0.0000115475],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99937004,0.000090116395,0.00010638764,0.0001843366,0.00006092419,0.0001881829],"domain_scores_gemma":[0.9996647,0.00014346853,0.00007079542,0.000012935509,0.000020819118,0.000087233886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012460655,0.00009999213,0.00031477626,0.000003637385,0.0009959384,0.000010521928,0.00018624753,0.0001710923,0.000013628252],"category_scores_gemma":[0.00004435302,0.000034449207,0.000050299306,0.00007431307,0.00006431145,0.000032192325,0.0025511417,0.00012827285,0.000015894844],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009276432,0.0000043704,0.9912345,0.0006842385,0.000042507738,0.0000025698791,0.0006008353,5.3965223e-8,0.0069385315,0.00012540664,0.000055688644,0.0003020195],"study_design_scores_gemma":[0.000091550704,0.00025724614,0.9984719,0.000088455534,0.00005378118,0.000003331393,0.00044248087,0.000026530337,0.000080525184,0.0003147624,0.000055961864,0.00011348221],"about_ca_topic_score_codex":0.00006842199,"about_ca_topic_score_gemma":0.000103669896,"teacher_disagreement_score":0.0072373906,"about_ca_system_score_codex":0.000005207203,"about_ca_system_score_gemma":8.7879795e-7,"threshold_uncertainty_score":0.76600534},"labels":[],"label_agreement":null},{"id":"W3051792462","doi":"10.1093/sysbio/syaa065","title":"Phylogenomics of Piranhas and Pacus (Serrasalmidae) Uncovers How Dietary Convergence and Parallelism Obfuscate Traditional Morphological Taxonomy","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Characiformes; Monophyly; Taxon; Ecology; Sister group; Clade; Incertae sedis; Systematics; Phylogenomics; Zoology; Evolutionary biology; Taxonomy (biology); Phylogenetics; Fish <Actinopterygii>","score_opus":0.08896297611364519,"score_gpt":0.22837970268343177,"score_spread":0.1394167265697866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3051792462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99656993,0.00027973845,0.0003247222,0.0017135319,0.00015856134,0.00072146184,0.000053316515,0.000021511258,0.00015722368],"genre_scores_gemma":[0.99811286,0.00006388204,0.00094469945,0.0006975306,0.000033398133,0.00011022423,0.000020048366,0.000006215849,0.000011131879],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986134,0.00027476743,0.0003727549,0.0004303008,0.00006268564,0.00024607955],"domain_scores_gemma":[0.99927586,0.00019210986,0.00023547192,0.0001448523,0.0000090731955,0.00014262825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002684671,0.00018742503,0.00056712516,0.000019745079,0.000072004834,0.0000094006355,0.00019336752,0.00024295853,0.00031129643],"category_scores_gemma":[0.00010089323,0.00013801445,0.00006162096,0.00007012492,0.0011524727,0.000055692573,0.0001899545,0.00013736988,0.000035250814],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005237394,0.000077817276,0.84537834,0.0014261177,0.00006409931,0.000026124164,0.00029869063,0.000030230296,0.15170865,0.00044753592,0.00041263428,0.00007736542],"study_design_scores_gemma":[0.0008002638,0.0010210797,0.9935352,0.00007346328,0.00012180174,0.00015742866,0.00065805507,0.0010350109,0.0006735759,0.0014800426,0.0001095008,0.0003345454],"about_ca_topic_score_codex":0.000040515777,"about_ca_topic_score_gemma":0.000026457477,"teacher_disagreement_score":0.15103507,"about_ca_system_score_codex":0.000030463008,"about_ca_system_score_gemma":0.000011653396,"threshold_uncertainty_score":0.5628066},"labels":[],"label_agreement":null},{"id":"W3126394916","doi":"10.1093/sysbio/syab001","title":"Long Branch Attraction Biases in Phylogenetics","year":2021,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Attraction; Biology; Phylogenetics; Evolutionary biology; Zoology; Genetics","score_opus":0.028128596959413707,"score_gpt":0.2786318828237367,"score_spread":0.25050328586432297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3126394916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875563,0.010317469,0.0009814996,0.00009516402,0.0003750107,0.0002800897,0.000012139544,0.0000037970685,0.00037857372],"genre_scores_gemma":[0.99874896,0.0003381612,0.00038230402,0.00016440894,0.00013386563,0.00006928751,0.000045410983,0.000013943318,0.000103655126],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868673,0.00024892666,0.000394201,0.00035081885,0.00005035945,0.00026896116],"domain_scores_gemma":[0.99930954,0.000060863367,0.00011340086,0.00037441464,0.00009759878,0.00004415756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026082512,0.00015031714,0.0003318699,0.000045965742,0.000046551977,0.000014813844,0.000119039774,0.00018305796,0.000011695057],"category_scores_gemma":[0.000347984,0.00013574683,0.00008637164,0.00010734993,0.000059803177,3.977338e-7,0.00014209707,0.00006771172,0.00001363908],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011544496,0.00006608104,0.15090574,0.0014734407,0.00009358762,0.0000092240725,0.0000708882,0.0003291639,0.84664917,0.00017793865,0.000024657978,0.00018854704],"study_design_scores_gemma":[0.001979949,0.0004702111,0.39140952,0.0016631116,0.00014548418,0.00044018714,0.0008537596,0.00046313688,0.59834164,0.0026580829,0.0005911397,0.0009838124],"about_ca_topic_score_codex":0.000017049673,"about_ca_topic_score_gemma":0.00033124993,"teacher_disagreement_score":0.24830757,"about_ca_system_score_codex":0.00001551023,"about_ca_system_score_gemma":0.00007481939,"threshold_uncertainty_score":0.5535595},"labels":[],"label_agreement":null},{"id":"W3135000522","doi":"10.1093/sysbio/syab013","title":"Interrogating Phylogenetic Discordance Resolves Deep Splits in the Rapid Radiation of Old World Fruit Bats (Chiroptera: Pteropodidae)","year":2021,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum","funders":"National Museum of Natural History","keywords":"Biology; Old World; Phylogenetic tree; Paraphyly; Phylogenetics; Evolutionary biology; Coalescent theory; Frugivore; Lineage (genetic); Systematics; Phylogenomics; Molecular clock; Zoology; Monophyly; Clade; Ecology; Taxonomy (biology); Gene; Genetics; Habitat","score_opus":0.023011864087959615,"score_gpt":0.24122290479021313,"score_spread":0.21821104070225353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3135000522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922775,0.004821597,0.000013741144,0.0016081549,0.00028722623,0.0004354067,0.000010784066,0.000015232555,0.00053034944],"genre_scores_gemma":[0.9989967,0.000085659354,0.00012612747,0.0004955681,0.00009820074,0.00011783623,0.000033669858,8.4770215e-7,0.00004542651],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975419,0.0011367155,0.0006341162,0.00032560367,0.00006453832,0.00029709455],"domain_scores_gemma":[0.99841374,0.0010678635,0.00030419757,0.0001373171,0.000053510295,0.00002336254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000750977,0.00016246802,0.00053373957,0.00002606997,0.00014778752,0.000015272988,0.00033422542,0.00013775936,0.0001312374],"category_scores_gemma":[0.00034637746,0.00005514365,0.00010173158,0.0003542084,0.00022611652,0.00003347695,0.00014720486,0.0001706578,0.000017515133],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000546177,0.00028668367,0.81281126,0.0026065963,0.00022324816,0.000027539278,0.0051988056,0.000013646177,0.1579,0.006619471,0.000044157427,0.014213982],"study_design_scores_gemma":[0.00027022613,0.0003299275,0.9852986,0.0008441173,0.000050584436,0.00003677764,0.006811723,0.00018933832,0.0032321576,0.002678364,0.000048205107,0.00020999383],"about_ca_topic_score_codex":0.000054592772,"about_ca_topic_score_gemma":0.008215678,"teacher_disagreement_score":0.17248733,"about_ca_system_score_codex":0.000018364733,"about_ca_system_score_gemma":0.000006805297,"threshold_uncertainty_score":0.4584541},"labels":[],"label_agreement":null},{"id":"W3172130576","doi":"10.1093/sysbio/syab044","title":"A New Pipeline for Removing Paralogs in Target Enrichment Data","year":2021,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Biology; Phylogenetic tree; Pipeline (software); Phylogenomics; Evolutionary biology; Computational biology; Divergence (linguistics); Tree (set theory); Sequence (biology); Phylogenetics; Genetics; Gene; Computer science; Clade; Mathematics","score_opus":0.03497564237824111,"score_gpt":0.29691241396185736,"score_spread":0.2619367715836162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3172130576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6207932,0.05491204,0.31773657,0.0016608814,0.0013901518,0.0023873968,0.0003189012,0.000013609131,0.00078725046],"genre_scores_gemma":[0.9707299,0.00012813798,0.027770514,0.00027179683,0.00022006713,0.00007408501,0.00040041297,0.000012870149,0.000392221],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867505,0.00013556736,0.00042937946,0.00047335724,0.000037391223,0.0002492809],"domain_scores_gemma":[0.9989346,0.000060835388,0.00011412379,0.0007750261,0.00006562134,0.000049762697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045341684,0.00013767304,0.00037312062,0.00002835557,0.000037252546,0.000012464913,0.00030994485,0.00013255922,0.00000814145],"category_scores_gemma":[0.00045282705,0.00011669034,0.00005740358,0.00006231378,0.000022503464,5.340619e-7,0.0004791702,0.000042535008,0.0000042173724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006400942,0.00009952579,0.022367783,0.005712365,0.00028809704,0.000010402271,0.0002652754,0.00014996009,0.963736,0.0023025814,0.0041602133,0.00084381027],"study_design_scores_gemma":[0.03177947,0.0037307136,0.032759093,0.009027372,0.0014744328,0.0011852684,0.01017741,0.054585256,0.5768471,0.13130231,0.13949761,0.0076340055],"about_ca_topic_score_codex":0.000032380478,"about_ca_topic_score_gemma":0.00015000478,"teacher_disagreement_score":0.38688892,"about_ca_system_score_codex":0.000011541601,"about_ca_system_score_gemma":0.00014798164,"threshold_uncertainty_score":0.4758494},"labels":[],"label_agreement":null},{"id":"W3174244217","doi":"10.1093/sysbio/syab049","title":"Unifying Phylogenetic Birth–Death Models in Epidemiology and Macroevolution","year":2021,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver; University of Toronto; Simon Fraser University; University of British Columbia","funders":"Canadian Institutes of Health Research; University of Toronto","keywords":"Macroevolution; Birth–death process; Inference; Unification; Biology; Sampling (signal processing); Phylogenetic tree; Range (aeronautics); Evolutionary biology; Process (computing); Computer science; Artificial intelligence; Genetics; Demography; Population","score_opus":0.07713335066736088,"score_gpt":0.28572228877411426,"score_spread":0.20858893810675339,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174244217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9246736,0.06575822,0.0036000393,0.0007055853,0.000347004,0.00029479715,0.000021587995,0.00003408576,0.0045650583],"genre_scores_gemma":[0.99738985,0.00048786032,0.0016383289,0.0003638087,0.000025664962,0.000008053529,0.00002246329,0.0000016057847,0.000062381136],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974138,0.0013780759,0.0005006866,0.00031872492,0.000035799578,0.00035288546],"domain_scores_gemma":[0.99875116,0.00084000063,0.00012900977,0.00017312597,0.000041097228,0.00006558851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009768509,0.00012679293,0.0005795144,0.000096070165,0.00010266354,0.0000054306843,0.00008390439,0.00017057489,0.00009221724],"category_scores_gemma":[0.000476393,0.00009698946,0.000039200324,0.00014280567,0.00016665926,0.00003937167,0.000026559392,0.0001264523,0.000039027043],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005188504,0.000005476459,0.9870555,0.001634124,0.000027444301,0.000011522883,0.00021493783,0.0009963546,0.000028950686,0.009848906,0.0000048370507,0.00016678605],"study_design_scores_gemma":[0.00024951302,0.000049722865,0.88220835,0.0003359196,0.000018371662,0.00016278839,0.00059733394,0.054155413,0.000003992632,0.06208086,0.000011881401,0.00012585675],"about_ca_topic_score_codex":0.00068932667,"about_ca_topic_score_gemma":0.025191756,"teacher_disagreement_score":0.104847126,"about_ca_system_score_codex":0.0000065070576,"about_ca_system_score_gemma":0.000037271133,"threshold_uncertainty_score":0.992596},"labels":[],"label_agreement":null},{"id":"W3186535602","doi":"10.1093/sysbio/syab064","title":"Unveiling the Patterns of Reticulated Evolutionary Processes with Phylogenomics: Hybridization and Polyploidy in the Genus <i>Rosa</i>","year":2021,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"European Regional Development Fund; Agence Nationale de la Recherche","keywords":"Phylogenomics; Biology; Genus; Evolutionary biology; Zoology; Botany; Phylogenetics; Genetics; Clade; Gene","score_opus":0.007679925105689807,"score_gpt":0.20925875317557843,"score_spread":0.20157882806988864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3186535602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98472667,0.012950718,0.0016468301,0.00027598444,0.000032596112,0.0003168888,0.00002323898,0.0000027505496,0.000024297124],"genre_scores_gemma":[0.9991757,0.00024075346,0.00008913499,0.00012484932,0.000051336945,0.000037731286,0.0002472497,0.000004487921,0.00002875664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926555,0.00024457587,0.00020576172,0.00015641088,0.00004322416,0.00008450438],"domain_scores_gemma":[0.999547,0.000045443878,0.000114587856,0.00018298648,0.000100042984,0.000009931169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017318249,0.000076976714,0.00014041379,0.000012873294,0.000055669356,0.000010250424,0.00008964575,0.000076994824,0.0000011845013],"category_scores_gemma":[0.00012199504,0.00003644369,0.000016031725,0.00008437063,0.00005752876,0.0000019815168,0.000031271884,0.000042190277,4.8589095e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033038054,0.000055203076,0.030341726,0.0061386833,0.00010615593,0.000010286792,0.0010607762,0.00037599495,0.9611825,0.0006132875,0.000054363532,0.000027996975],"study_design_scores_gemma":[0.0016106614,0.0007065482,0.019801376,0.0036754818,0.00033329602,0.0030336734,0.00776179,0.0013471362,0.95987624,0.0003185076,0.0009476456,0.00058766897],"about_ca_topic_score_codex":0.000038929014,"about_ca_topic_score_gemma":0.0006396427,"teacher_disagreement_score":0.014449004,"about_ca_system_score_codex":0.0000048241905,"about_ca_system_score_gemma":0.00011067028,"threshold_uncertainty_score":0.14861305},"labels":[],"label_agreement":null},{"id":"W4210941983","doi":"10.1093/sysbio/syac008","title":"Analyzing Phylogenetic Trees with a Tree Lattice Coordinate System and a Graph Polynomial","year":2022,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Phylogenetic tree; Tree rearrangement; Phylogenetic network; Computational phylogenetics; Tree (set theory); Weight-balanced tree; Phylogenetics; K-ary tree; Mathematics; Combinatorics; Binary tree; Biology; Tree structure; Binary search tree; Gene; Genetics","score_opus":0.008335625750195213,"score_gpt":0.21404695142534438,"score_spread":0.20571132567514916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210941983","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98985815,0.008248208,0.00056172657,0.00008355745,0.00016558464,0.0006698446,0.000048832768,0.000012411676,0.00035169016],"genre_scores_gemma":[0.99873614,0.000033789845,0.00056372146,0.00006421592,0.00008458778,0.00040144648,0.000019946665,0.000025806945,0.00007034776],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982769,0.00043750514,0.00038099627,0.00049540034,0.00008253007,0.00032666206],"domain_scores_gemma":[0.99917823,0.000049875583,0.00023383372,0.00040682036,0.000053840253,0.00007742206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044149437,0.00024402289,0.0005121322,0.000105360865,0.00033798945,0.000023982959,0.00024114715,0.00008377477,0.000003953046],"category_scores_gemma":[0.000027898912,0.00019024263,0.00008628763,0.00014648783,0.00015145294,5.7591734e-7,0.00041880473,0.00009958136,0.0000016493326],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043728686,0.0001235289,0.13573433,0.0077785933,0.0018489886,0.00003148661,0.0008038096,0.0008194857,0.84973377,0.0020593363,0.00011528137,0.00051411317],"study_design_scores_gemma":[0.057430506,0.069660686,0.53267854,0.009270095,0.013413043,0.02011756,0.11399657,0.020700742,0.13018845,0.0049969363,0.008127516,0.019419366],"about_ca_topic_score_codex":0.000059243786,"about_ca_topic_score_gemma":0.00010066553,"teacher_disagreement_score":0.7195453,"about_ca_system_score_codex":0.000026921565,"about_ca_system_score_gemma":0.000049193106,"threshold_uncertainty_score":0.77578694},"labels":[],"label_agreement":null},{"id":"W4212963177","doi":"10.1080/10635150309345","title":"Branch Lengths and Support","year":2003,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Diverse Scientific and Economic Studies","field":"Economics, Econometrics and Finance","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"","keywords":"Biology; Evolutionary biology","score_opus":0.03898353925134973,"score_gpt":0.2152921185786546,"score_spread":0.17630857932730487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4212963177","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.100971796,0.0047370163,0.001875761,0.00013574063,0.0032895822,0.000557066,0.000118644915,0.000047614692,0.8882668],"genre_scores_gemma":[0.97983557,0.00004090146,0.00020989393,0.00012349787,0.000014916425,0.000029207684,0.0000016044564,0.0000050072545,0.019739375],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9990277,0.000028145581,0.0004601482,0.00028710646,0.000006932883,0.00018993337],"domain_scores_gemma":[0.99949753,0.000056510937,0.00018950643,0.00020430629,0.000010319456,0.000041843192],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0009028963,0.00008704166,0.00047045827,0.00008639795,0.00007186141,0.000029749459,0.000083746214,0.00006535778,0.00223849],"category_scores_gemma":[0.00022089797,0.000080842394,0.000047180783,0.000052717838,0.00010092893,0.00005010274,0.00004278052,0.000040466664,0.006374082],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[7.2328424e-7,0.000011475495,0.020269759,0.0012525287,0.000060009967,5.17138e-7,0.0004831122,7.0701793e-7,0.0000070431106,0.97615504,0.0017497514,0.000009339766],"study_design_scores_gemma":[0.002932268,0.0003106515,0.008162954,0.00063013425,0.00007650579,0.00015647683,0.0046013915,0.00065856805,0.00019470046,0.8462747,0.13448425,0.0015174225],"about_ca_topic_score_codex":0.000012112577,"about_ca_topic_score_gemma":0.0000019045743,"teacher_disagreement_score":0.8788638,"about_ca_system_score_codex":0.000019718867,"about_ca_system_score_gemma":0.0000064926953,"threshold_uncertainty_score":0.9986736},"labels":[],"label_agreement":null},{"id":"W4213269292","doi":"10.1080/10635150309331","title":"18S Ribosomal RNA and Tetrapod Phylogeny","year":2003,"lang":"en","type":"article","venue":"Systematic Biology","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; University of Ottawa","keywords":"Biology; 18S ribosomal RNA; Phylogenetics; Evolutionary biology; Ribosomal RNA; Tetrapod (structure); Zoology; Paleontology; Genetics; Gene","score_opus":0.011484037362243285,"score_gpt":0.23761099146168438,"score_spread":0.22612695409944109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213269292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97433263,0.01786328,0.0005757337,0.00007661224,0.0011131101,0.0005442647,0.000012190323,0.00007367819,0.005408508],"genre_scores_gemma":[0.99828994,0.000032345564,0.00011510754,0.00016748767,0.000009950327,0.000057505287,0.000009950187,0.000011889956,0.0013058146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975805,0.0012723735,0.00049756217,0.00027062994,0.00001458597,0.0003643022],"domain_scores_gemma":[0.9991394,0.0003174274,0.00015487669,0.00031501666,0.000050942584,0.000022322092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054980844,0.00019512378,0.00055151846,0.000119154254,0.00013212884,0.000014998255,0.00015769515,0.00032972582,0.0003964241],"category_scores_gemma":[0.0006049857,0.00013913533,0.000084450796,0.000071332426,0.0002968728,0.000030120827,0.00006002184,0.00020012395,0.0006047269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006572632,0.00006402992,0.0023499194,0.0021135607,0.00030733802,0.000004160636,0.00040936717,1.3096889e-7,0.9246118,0.06979537,0.00016461538,0.000113995455],"study_design_scores_gemma":[0.005512551,0.0021774557,0.010326951,0.0029347218,0.00036974798,0.004157637,0.0033946414,0.000013968806,0.9520457,0.0076673697,0.010100941,0.001298342],"about_ca_topic_score_codex":0.000013762369,"about_ca_topic_score_gemma":0.000003974542,"teacher_disagreement_score":0.062128004,"about_ca_system_score_codex":0.000019223628,"about_ca_system_score_gemma":0.000039739054,"threshold_uncertainty_score":0.77727425},"labels":[],"label_agreement":null},{"id":"W4226066396","doi":"10.1093/sysbio/syac028","title":"A Linear Time Solution to the Labeled Robinson–Foulds Distance Problem","year":2022,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Optimization and Search Problems","field":"Computer Science","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Mathematics","score_opus":0.016788876269763293,"score_gpt":0.2589924925464515,"score_spread":0.2422036162766882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226066396","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009863307,0.00018435462,0.98472315,0.01121612,0.00026920054,0.0018136982,0.000009032985,0.00017422019,0.0006238818],"genre_scores_gemma":[0.9387049,0.0000025540187,0.055878464,0.0016248514,0.000046225174,0.0014366222,0.000014792645,0.000011634069,0.0022799298],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99781924,0.0010327153,0.00036670585,0.00030175093,0.00019181737,0.00028776802],"domain_scores_gemma":[0.99899054,0.00012606986,0.00014043052,0.00059454126,0.00008318643,0.00006526374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001551137,0.00010181435,0.0002439489,0.00007864892,0.00041476538,0.000059389604,0.0010916038,0.00003864598,0.00007691085],"category_scores_gemma":[0.000091399364,0.0000657424,0.000048990034,0.0005661971,0.00003108561,0.00006807828,0.00076187693,0.00016649645,0.00033308647],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038688257,0.0003606292,0.00035507977,0.006700948,0.00018726464,0.000013908361,0.013824934,0.1231318,0.009754062,0.8309602,0.013702405,0.00097008917],"study_design_scores_gemma":[0.00026393484,0.00027802426,0.000013918396,0.00016939668,0.000006781973,0.000031923395,0.00007933761,0.9918888,0.00004311676,0.0034557916,0.0036088454,0.00016009744],"about_ca_topic_score_codex":0.00001556246,"about_ca_topic_score_gemma":0.000009039986,"teacher_disagreement_score":0.9377186,"about_ca_system_score_codex":0.000089276684,"about_ca_system_score_gemma":0.00007323434,"threshold_uncertainty_score":0.4281264},"labels":[],"label_agreement":null},{"id":"W4230887176","doi":"10.1080/10635150151125833","title":"The Phylogenetic Trunk: Maximal Inclusion of Taxa with Missing Data in an Analysis of the Lepospondyli (Vertebrata, Tetrapoda)","year":2001,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Taxon; Phylogenetic tree; Biology; Completeness (order theory); Phylogenetics; A priori and a posteriori; Tree (set theory); Trunk; Evolutionary biology; Ecology; Mathematics; Combinatorics; Genetics","score_opus":0.03330820857697023,"score_gpt":0.2678247800388728,"score_spread":0.23451657146190255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4230887176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945498,0.003979774,0.00026677572,0.00031830958,0.00009012561,0.00027732775,0.000061323946,0.0000049517844,0.0004515755],"genre_scores_gemma":[0.99966025,0.000039645958,0.00018794242,0.000042084364,0.000008175528,0.0000015860294,0.000047265567,0.0000011109672,0.000011924145],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981912,0.00082324253,0.0004679588,0.00020566575,0.00013524678,0.00017671855],"domain_scores_gemma":[0.9984107,0.00045791993,0.00034779112,0.0007117933,0.000045081273,0.000026728136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010027424,0.00009758382,0.0004619794,0.00011579055,0.00028824675,0.000007467878,0.000707346,0.00007530754,0.000057735735],"category_scores_gemma":[0.00015244735,0.000041853782,0.00004597626,0.0006602765,0.00044551492,0.00004448631,0.00012496287,0.0000814699,0.0000015147507],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035716956,0.000014286064,0.99801874,0.00029866508,0.00018518761,0.0000015050197,0.00052183523,0.00032436426,0.00013015242,0.00010541618,0.0000017789271,0.00036237345],"study_design_scores_gemma":[0.00014235348,0.00011092627,0.9492341,0.00017036722,0.00024343307,0.000011962081,0.0010276876,0.048778996,0.000011495146,0.00020500881,0.000008975726,0.00005467049],"about_ca_topic_score_codex":0.0015348081,"about_ca_topic_score_gemma":0.26660728,"teacher_disagreement_score":0.2650725,"about_ca_system_score_codex":0.0000030661472,"about_ca_system_score_gemma":0.000042615862,"threshold_uncertainty_score":0.7467752},"labels":[],"label_agreement":null},{"id":"W4232018598","doi":"10.1080/10635150215881","title":"Whole-Tree Methods for Detecting Differential Diversification Rates","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cladogenesis; Biology; Phylogenetic tree; Diversification (marketing strategy); Evolutionary biology; Tree (set theory); Clade; Mathematics; Combinatorics; Genetics","score_opus":0.0790822868142146,"score_gpt":0.3231324740286866,"score_spread":0.24405018721447203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4232018598","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36429957,0.015197619,0.60589474,0.0017044768,0.0030952273,0.0023071973,0.00008215617,0.00022754635,0.007191466],"genre_scores_gemma":[0.99003077,0.000012580934,0.009634182,0.00005419549,0.000061465216,0.000018128823,0.000021128992,0.0000012706538,0.00016625694],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988232,0.00049688265,0.0002700155,0.00018438433,0.000030340323,0.00019514364],"domain_scores_gemma":[0.9986466,0.0009913879,0.00015180117,0.00012972836,0.000044368408,0.000036113386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041292285,0.0000949797,0.00029390724,0.000058148646,0.00024512576,0.000014859133,0.0001275836,0.0000986893,0.00030264445],"category_scores_gemma":[0.00041506774,0.00006561942,0.00006774463,0.00006752248,0.00008862678,0.00003486314,0.000009273447,0.000056712437,0.00015404852],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025354188,0.000025055078,0.96587324,0.007439139,0.0002709192,6.885023e-7,0.0018151532,0.000018106724,0.0026175152,0.0012190669,0.00029083109,0.02040492],"study_design_scores_gemma":[0.0010742536,0.0004433806,0.6767091,0.000549379,0.0002689723,0.000035216737,0.0029232607,0.31045014,0.0003823918,0.006279697,0.0004084835,0.00047568916],"about_ca_topic_score_codex":0.000065457054,"about_ca_topic_score_gemma":0.0016430573,"teacher_disagreement_score":0.6257312,"about_ca_system_score_codex":0.0000029979017,"about_ca_system_score_gemma":0.0000028212444,"threshold_uncertainty_score":0.33137444},"labels":[],"label_agreement":null},{"id":"W4236821609","doi":"10.1080/10635150215876","title":"Is Cladogenesis Heritable?","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"","keywords":"Cladogenesis; Biology; Phylogenetic tree; Evolutionary biology; Heritability; Macroevolution; Clade; Phylogenetics; Genetics; Gene","score_opus":0.0598982686340522,"score_gpt":0.23646919631245078,"score_spread":0.17657092767839858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236821609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.74108183,0.071032226,0.0008373527,0.004272749,0.0018651669,0.00095699227,0.00009430541,0.00024844272,0.17961094],"genre_scores_gemma":[0.9981004,0.000081493075,0.00033100767,0.00076220446,0.000042745032,0.000005038297,0.000004339247,0.0000011091201,0.00067164394],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990676,0.00022450388,0.00025925858,0.00017239821,0.00005249979,0.00022371144],"domain_scores_gemma":[0.999493,0.00016804284,0.00008231235,0.00017883218,0.000026832848,0.000050951952],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019508113,0.00009625032,0.00030549234,0.00004563835,0.00013120275,0.0000097968605,0.00013528159,0.00010366698,0.0058875503],"category_scores_gemma":[0.00006628597,0.000065017484,0.0000567459,0.00010069587,0.00010880351,0.000030700976,0.0000078685125,0.000054189924,0.002621414],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000001433534,0.0000058192945,0.9963872,0.001406488,0.00005632552,0.000002314395,0.0003883369,0.000004867118,0.0000088686265,0.00036998346,0.0011695996,0.000198798],"study_design_scores_gemma":[0.00049383164,0.00024732578,0.96830845,0.00059749256,0.00011789015,0.00017067621,0.0015058831,0.023050103,0.00003322187,0.0035800356,0.0014200177,0.00047505606],"about_ca_topic_score_codex":0.00022487668,"about_ca_topic_score_gemma":0.0030350098,"teacher_disagreement_score":0.2570186,"about_ca_system_score_codex":0.0000018909932,"about_ca_system_score_gemma":0.0000035723492,"threshold_uncertainty_score":0.9981552},"labels":[],"label_agreement":null},{"id":"W4248741706","doi":"10.1080/10635150215873","title":"Combined Nuclear and Mitochondrial DNA Sequences Resolve Generic Relationships within the Cracidae (Galliformes, Aves)","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"Universidade de São Paulo","keywords":"Biology; Phylogenetic tree; Maximum parsimony; Mitochondrial DNA; Clade; Sister group; Evolutionary biology; Nuclear gene; Phylogenetics; Genetics; Gene","score_opus":0.02895487210793953,"score_gpt":0.2190796633425337,"score_spread":0.19012479123459416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248741706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961226,0.0009869798,0.0005022628,0.00068369904,0.0004581252,0.0005467789,0.000019247851,0.000019087962,0.0006612207],"genre_scores_gemma":[0.9976674,0.00003349461,0.0015380175,0.0002792617,0.00013484963,0.000016433985,0.000039285685,0.000009277807,0.0002820055],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986826,0.0004642795,0.00033473512,0.0002694159,0.000088055705,0.00016091761],"domain_scores_gemma":[0.9992587,0.00005075703,0.00021877085,0.00035508827,0.000055053333,0.000061659324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002709528,0.00014615702,0.00022323741,0.000034397945,0.00032282528,0.000044182383,0.00022683751,0.00026361307,0.000060108596],"category_scores_gemma":[0.0002507119,0.00009614718,0.00006153439,0.00008183995,0.0002086579,0.000004256756,0.00012155012,0.00013603507,0.00004093545],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040966217,0.00019722093,0.17819855,0.008619059,0.0014965307,0.000020312646,0.014347872,0.0012986949,0.67669994,0.104532756,0.013868226,0.00031120086],"study_design_scores_gemma":[0.03412114,0.014587178,0.47952926,0.007766832,0.0052380627,0.0045742206,0.06962984,0.0877903,0.06988298,0.16798683,0.04527171,0.013621626],"about_ca_topic_score_codex":0.000013406606,"about_ca_topic_score_gemma":0.000030590785,"teacher_disagreement_score":0.60681695,"about_ca_system_score_codex":0.000007734738,"about_ca_system_score_gemma":0.000013279719,"threshold_uncertainty_score":0.39207682},"labels":[],"label_agreement":null},{"id":"W4248898943","doi":"10.1080/10635150215883","title":"Using Tree Shape","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Forest ecology and management","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick; Simon Fraser University","funders":"","keywords":"Biology; Tree (set theory); Evolutionary biology; Mathematics; Combinatorics","score_opus":0.040392755921139875,"score_gpt":0.2450117061546564,"score_spread":0.2046189502335165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248898943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9275836,0.00018396617,0.0073948246,0.00028873413,0.0004396483,0.000792376,9.4084356e-7,0.00007350718,0.06324242],"genre_scores_gemma":[0.99789065,0.0000012923402,0.0012404784,0.0002539397,0.000012427191,0.000029434179,4.935532e-7,0.00000365942,0.00056760595],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9993259,0.00011762453,0.00018967503,0.00015331106,0.000040119176,0.00017337064],"domain_scores_gemma":[0.99967194,0.00003552805,0.00007260445,0.00018853912,0.0000015795827,0.000029818217],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00021210752,0.000069095084,0.00016871563,0.00002021821,0.00006447664,0.000004895553,0.00014977084,0.00006957126,0.0074214716],"category_scores_gemma":[0.000039739367,0.000050763385,0.000031726217,0.000067535984,0.00011914901,0.000032513664,0.00015725136,0.000041247316,0.003009101],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022397959,0.0009202825,0.5837803,0.020221438,0.00053625065,0.00015404975,0.0042215614,0.0041832565,0.020509683,0.34486714,0.01745687,0.003126755],"study_design_scores_gemma":[0.0012229714,0.00045909142,0.0569831,0.0008634191,0.00025396605,0.00018163417,0.000486313,0.8652432,0.0002594791,0.072022535,0.0011567946,0.0008674779],"about_ca_topic_score_codex":0.000027900436,"about_ca_topic_score_gemma":0.00005145909,"teacher_disagreement_score":0.86105996,"about_ca_system_score_codex":0.00005169554,"about_ca_system_score_gemma":5.8910473e-7,"threshold_uncertainty_score":0.99776715},"labels":[],"label_agreement":null},{"id":"W4249617418","doi":"10.1080/10635150215879","title":"Signatures of Random and Selective Mass Extinctions in Phylogenetic Tree Balance","year":2002,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Extinction event; Extinction (optical mineralogy); Biology; Genetic algorithm; Phylogenetic tree; Clade; Lineage (genetic); Ecology; Evolutionary biology; Paleontology; Gene; Population; Biological dispersal; Genetics","score_opus":0.015745614395564822,"score_gpt":0.2149166262696585,"score_spread":0.19917101187409367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4249617418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9555791,0.025182193,0.00043743124,0.00019959615,0.0002193113,0.0005348754,0.00002096405,0.000019051358,0.017807472],"genre_scores_gemma":[0.99951714,0.0001257076,0.00025791867,0.000033476423,0.000013291105,0.000008043165,0.000002466601,7.400798e-7,0.00004122246],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990745,0.0003555557,0.00025822266,0.00013903681,0.000036184556,0.00013645615],"domain_scores_gemma":[0.9993037,0.00047147804,0.000102801016,0.000074316406,0.000024203971,0.000023502442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021359623,0.000076688135,0.00035201124,0.00007956855,0.000047651043,0.0000028708898,0.00006314286,0.00008990424,0.00023720917],"category_scores_gemma":[0.00014233311,0.000053018946,0.000025336161,0.00012293879,0.000160551,0.000015983462,0.000004284885,0.00007639597,0.000017049497],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012761354,0.000007238129,0.99808794,0.00080320134,0.000034487046,0.0000014840401,0.0004218218,0.00010116605,0.0002309046,0.00013253176,0.00001901891,0.00014746016],"study_design_scores_gemma":[0.0006906606,0.00012791985,0.98052245,0.0001614096,0.000022367849,0.000018025967,0.00037698835,0.0163419,0.000028499704,0.0016264883,0.000004117995,0.00007917935],"about_ca_topic_score_codex":0.00011677023,"about_ca_topic_score_gemma":0.009891309,"teacher_disagreement_score":0.04393803,"about_ca_system_score_codex":0.0000018385867,"about_ca_system_score_gemma":0.0000042696865,"threshold_uncertainty_score":0.55195826},"labels":[],"label_agreement":null},{"id":"W4288038235","doi":"10.1093/sysbio/syac051","title":"Exon-based Phylogenomics and the Relationships of African Cichlid Fishes: Tackling the Challenges of Reconstructing Phylogenies with Repeated Rapid Radiations","year":2022,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Museum of Nature; Royal Ontario Museum; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Grantová Agentura České Republiky; Universität Basel; University of Michigan; American Museum of Natural History; Nature; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Cichlid; Phylogenetic tree; Phylogenomics; Evolutionary biology; Coalescent theory; Phylogenetics; Supertree; Supermatrix; Clade; Gene; Genetics; Fish <Actinopterygii>","score_opus":0.0311947281632158,"score_gpt":0.21910321255370233,"score_spread":0.18790848439048652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4288038235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99608254,0.0009442259,0.000068981804,0.0012704335,0.00010076884,0.00094694324,0.00003304396,0.000014194137,0.00053888693],"genre_scores_gemma":[0.99905777,0.000026841575,0.00053593086,0.000050193255,0.0000110157625,0.00029939777,0.000005475888,0.000007559798,0.0000058188602],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971213,0.0018429824,0.00054950267,0.00023548078,0.00007964378,0.0001711155],"domain_scores_gemma":[0.99706125,0.0018276473,0.0007027377,0.0003667358,0.000019332185,0.000022295773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023019465,0.00011888894,0.00042990115,0.000050373816,0.0004623957,0.0000050033154,0.00029351114,0.000077862205,0.00009471326],"category_scores_gemma":[0.0003732444,0.000063070845,0.00006142766,0.00018677088,0.0014789801,0.00001897404,0.0001579426,0.0002205451,0.0000014155626],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023226373,0.00013547235,0.9596041,0.0016478493,0.00025812318,0.0000020152586,0.011689667,0.0043640225,0.014115424,0.0074918848,0.000018199651,0.000440996],"study_design_scores_gemma":[0.004193715,0.0017005721,0.83892083,0.00042128,0.00085314165,0.00037625985,0.13148308,0.013523487,0.0016288847,0.006215294,0.000054406126,0.0006290321],"about_ca_topic_score_codex":0.000097100215,"about_ca_topic_score_gemma":0.0002797487,"teacher_disagreement_score":0.12068324,"about_ca_system_score_codex":0.000052073057,"about_ca_system_score_gemma":0.000029153764,"threshold_uncertainty_score":0.54493636},"labels":[],"label_agreement":null},{"id":"W4288711843","doi":"10.1093/sysbio/syac052","title":"The Community Coevolution Model with Application to the Study of Evolutionary Relationships between Genes Based on Phylogenetic Profiles","year":2022,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Research Nova Scotia; Genome Canada","keywords":"Phylogenetic tree; Biology; Trait; Phylogenetic comparative methods; Coevolution; Evolutionary biology; Pairwise comparison; Phylogenetics; Genetic architecture; Quantitative trait locus; Gene; Genetics; Artificial intelligence; Computer science","score_opus":0.024844930121210505,"score_gpt":0.2662271594996588,"score_spread":0.2413822293784483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4288711843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9148705,0.0003120104,0.08158397,0.0004316641,0.000041321873,0.0026137957,0.00006627401,0.000012702035,0.00006777406],"genre_scores_gemma":[0.99748653,0.0000023879365,0.0005163838,0.00007160751,0.000030630203,0.0016532184,0.00017561846,0.000013061765,0.000050544426],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9964368,0.002598827,0.00039666065,0.00021686264,0.00019022422,0.00016066282],"domain_scores_gemma":[0.9984273,0.00021167152,0.0002583929,0.00093840796,0.00012587877,0.00003836033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013479692,0.0001308857,0.0001946928,0.000052916606,0.001226877,0.0000073560054,0.0004955462,0.00006952942,0.0000011649425],"category_scores_gemma":[0.00012934978,0.00007689993,0.000044329216,0.00020491461,0.000117390366,0.0000010180851,0.00022682783,0.00024096473,0.0000029889802],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015451512,0.0003743713,0.10342912,0.0003850439,0.0001179723,7.028316e-8,0.00057118456,0.8849044,0.008224463,0.0015859903,0.00015431258,0.0000985515],"study_design_scores_gemma":[0.0014520994,0.006821025,0.14721383,0.00012580155,0.00026586643,0.00001677669,0.01628308,0.8246205,0.0005039942,0.002024975,0.0002244369,0.00044763982],"about_ca_topic_score_codex":0.000052642656,"about_ca_topic_score_gemma":0.00028135921,"teacher_disagreement_score":0.08261605,"about_ca_system_score_codex":0.000049766197,"about_ca_system_score_gemma":0.00010198313,"threshold_uncertainty_score":0.943627},"labels":[],"label_agreement":null},{"id":"W4292202373","doi":"10.1093/sysbio/syac059","title":"Predicting Long Pendant Edges in Model Phylogenies, with Applications to Biodiversity and Tree Inference","year":2022,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Marsden Fund; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Phylogenetic tree; Tree (set theory); Lambda; Biology; Combinatorics; Extant taxon; Birth–death process; Biodiversity; Extinction (optical mineralogy); Mathematics; Evolutionary biology; Ecology; Physics; Paleontology; Genetics; Demography","score_opus":0.03573032994144834,"score_gpt":0.23994640176462798,"score_spread":0.20421607182317963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4292202373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910368,0.0015009999,0.005372905,0.00035965999,0.000044389675,0.00068572984,0.0001197147,0.000026457605,0.0008533645],"genre_scores_gemma":[0.99918616,0.000010781131,0.00057324325,0.00013045681,0.0000056745184,0.0000552099,0.00001936531,5.1419863e-7,0.000018573173],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992592,0.00017755381,0.00016145143,0.00019361851,0.000056845307,0.00015136688],"domain_scores_gemma":[0.9995848,0.00017786276,0.00006970072,0.00010431704,0.000019450801,0.000043851032],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022889856,0.000073307594,0.00021384023,0.000092288225,0.00028485124,0.0000074614513,0.00012479936,0.00002715181,0.00003498094],"category_scores_gemma":[0.000035635392,0.00005363477,0.000011423686,0.00015044412,0.0000907817,0.000025173716,0.000054307286,0.000092343165,0.000012607693],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011824599,0.000006381246,0.9948247,0.00043619555,0.000016252956,0.0000017254724,0.0009237433,0.0034288224,0.0000055262203,0.00019264154,0.000006092618,0.00014609341],"study_design_scores_gemma":[0.00018067737,0.00015605449,0.9744289,0.000061610175,0.000020353384,0.000028229339,0.0026884184,0.021953182,0.0000016294154,0.00037190705,0.000009280274,0.00009975241],"about_ca_topic_score_codex":0.0008139473,"about_ca_topic_score_gemma":0.073580205,"teacher_disagreement_score":0.07276626,"about_ca_system_score_codex":0.0000065968893,"about_ca_system_score_gemma":0.000028257593,"threshold_uncertainty_score":0.94332457},"labels":[],"label_agreement":null},{"id":"W4312094053","doi":"10.1093/sysbio/syac078","title":"Phylogenomics Reveals that Mitochondrial Capture and Nuclear Introgression Characterize Skua Species Proposed to be of Hybrid Origin","year":2022,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phylogenomics; Biology; Introgression; Mitochondrial DNA; Evolutionary biology; Zoology; Phylogenetics; Clade; Genetics; Gene","score_opus":0.022182567179211504,"score_gpt":0.23362446060336345,"score_spread":0.21144189342415196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312094053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975187,0.0002167962,0.00028083878,0.00034895694,0.00050002366,0.000715915,0.0003547307,0.000007527257,0.000056518293],"genre_scores_gemma":[0.99792254,0.000010299239,0.0011004618,0.00041377556,0.00010348591,0.00001678636,0.00022845269,0.000010572534,0.00019364654],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989085,0.0002898401,0.00026892583,0.00028028002,0.000100296864,0.00015211642],"domain_scores_gemma":[0.99935275,0.000014189185,0.00023744529,0.00028602875,0.00004555507,0.00006399906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017120277,0.000133518,0.00034253226,0.000058389665,0.00012806694,0.000013489956,0.0002162398,0.000083279505,0.000090779875],"category_scores_gemma":[0.000055298297,0.00011191441,0.000064306354,0.000051304825,0.00007328583,0.000001843762,0.0004066536,0.00008626857,0.0000018136396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013023303,0.000019794828,0.0045908378,0.0011110698,0.00007027597,0.0000028015359,0.00063170446,0.00003009044,0.99185354,0.0009490515,0.000588048,0.000022555221],"study_design_scores_gemma":[0.018824847,0.013603237,0.12021112,0.003111164,0.0017615363,0.003257319,0.039945327,0.0009213078,0.534099,0.009600659,0.24815081,0.0065137018],"about_ca_topic_score_codex":0.000011669751,"about_ca_topic_score_gemma":0.000003088899,"teacher_disagreement_score":0.45775455,"about_ca_system_score_codex":0.000015109487,"about_ca_system_score_gemma":0.000024320236,"threshold_uncertainty_score":0.45637372},"labels":[],"label_agreement":null},{"id":"W4316661914","doi":"10.1093/sysbio/syad001","title":"Impact of Phylogenetic Tree Completeness and Mis-specification of Sampling Fractions on Trait Dependent Diversification Models","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University","funders":"Natural Environment Research Council; Sight Research UK; Newton Fund","keywords":"Phylogenetic tree; Clade; Sampling (signal processing); Statistics; Biology; Trait; Macroevolution; Completeness (order theory); Tree (set theory); False positive paradox; Phylogenetics; Evolutionary biology; Mathematics; Computer science; Combinatorics","score_opus":0.14512338033165825,"score_gpt":0.31474144630230094,"score_spread":0.1696180659706427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4316661914","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99143606,0.0005618924,0.006563259,0.000045522378,0.00009834057,0.0003004613,0.00012934425,0.00001911657,0.00084602105],"genre_scores_gemma":[0.9996409,0.000049356822,0.0002153881,0.0000050924014,0.000010828947,0.0000036733547,0.00006674568,0.0000011286696,0.000006917136],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99915123,0.0001642556,0.0003474219,0.00014659409,0.000073421084,0.000117087664],"domain_scores_gemma":[0.9989803,0.0005372412,0.0002462958,0.00013927126,0.000066348526,0.000030582036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003775985,0.000075904165,0.0002912143,0.00016487222,0.000080044396,0.0000030990964,0.00008413165,0.00007509591,0.000031057556],"category_scores_gemma":[0.000060119444,0.000054342545,0.000053757874,0.0001629103,0.00012318594,0.000024765426,0.00000535101,0.000044344946,0.000014946734],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042585714,0.00002370489,0.98259395,0.0015538591,0.00014596662,3.10703e-7,0.0009849365,0.009653473,0.002298211,0.0016847362,0.0000074663026,0.001010811],"study_design_scores_gemma":[0.00014376691,0.00015078565,0.97677153,0.00012936669,0.000029551635,0.0000038822755,0.0009497796,0.020174114,0.000028441984,0.0015691392,3.81803e-7,0.000049284547],"about_ca_topic_score_codex":0.00055438554,"about_ca_topic_score_gemma":0.0019557013,"teacher_disagreement_score":0.010520642,"about_ca_system_score_codex":0.0000050107965,"about_ca_system_score_gemma":0.000013233577,"threshold_uncertainty_score":0.22160247},"labels":[],"label_agreement":null},{"id":"W4320033035","doi":"10.1093/sysbio/syad006","title":"Handling Logical Character Dependency in Phylogenetic Inference: Extensive Performance Testing of Assumptions and Solutions Using Simulated and Empirical Data","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Smithsonian Institution; National Science Foundation","keywords":"Inference; Character evolution; Weighting; Character (mathematics); Phylogenetic tree; Coding (social sciences); Bayesian probability; Dependency (UML); Maximum parsimony; Computer science; Character encoding; Algorithm; Artificial intelligence; Mathematics; Statistics; Biology","score_opus":0.3460427459127692,"score_gpt":0.3736714499833783,"score_spread":0.027628704070609134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320033035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99755275,0.0017761099,0.00015410564,0.00006869108,0.00008555218,0.0002344867,0.000042641183,0.00002199013,0.00006367685],"genre_scores_gemma":[0.9992855,0.00010863936,0.00051857333,0.000024677103,0.000015351401,9.864026e-7,0.000042164847,0.0000011202113,0.0000029969983],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988566,0.00026212982,0.00036923564,0.00023743295,0.000052664156,0.0002219584],"domain_scores_gemma":[0.99853307,0.0010998946,0.000121508565,0.00015201973,0.000054562894,0.000038950075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005921402,0.00009062946,0.00033975195,0.00013217589,0.00016370231,0.000009351101,0.00010476472,0.00011205823,0.000013471689],"category_scores_gemma":[0.0009314632,0.00006529301,0.000010141156,0.00025182616,0.00022850621,0.000062227795,0.00008864244,0.000110820794,0.000011017146],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000003471084,0.000004532262,0.99700844,0.00091752614,0.00001740464,0.0000031273746,0.000231981,0.0014358828,0.00017562241,0.000013869223,4.8241594e-7,0.00018764584],"study_design_scores_gemma":[0.00008835317,0.000037826147,0.5895421,0.00029383125,0.00001729023,0.000026915082,0.00017749112,0.40959898,8.9548206e-7,0.00017213543,2.1414844e-7,0.000044001325],"about_ca_topic_score_codex":0.00019373115,"about_ca_topic_score_gemma":0.0017107025,"teacher_disagreement_score":0.40816307,"about_ca_system_score_codex":0.0000022368686,"about_ca_system_score_gemma":0.000031745167,"threshold_uncertainty_score":0.26625717},"labels":[],"label_agreement":null},{"id":"W4366351311","doi":"10.1093/sysbio/syad020","title":"Species Delimitation, Phylogenomics, and Biogeography of Sulawesi Flying Lizards: A Diversification History Complicated by Ancient Hybridization, Cryptic Species, and Arrested Speciation","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Center for Research Resources; Museum of Vertebrate Zoology; Lembaga Ilmu Pengetahuan Indonesia; National Science Foundation; National Institutes of Health; University of California","keywords":"Biology; Species complex; Phylogeography; Biogeography; Population; Endemism; Evolutionary biology; Phylogenetic tree; Ecology; Biological dispersal; Lineage (genetic); Zoology; Genetics","score_opus":0.025775163379662753,"score_gpt":0.2044684790986969,"score_spread":0.17869331571903413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366351311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99408114,0.0010671973,0.0032776701,0.00018109981,0.000251989,0.0007197938,0.000041586216,0.000065282286,0.0003142667],"genre_scores_gemma":[0.9989006,0.00029244868,0.00027189398,0.0000785666,0.000020348532,0.000027975575,0.00021945279,0.000008624714,0.00018008468],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99862355,0.00022248937,0.0004928513,0.00036355047,0.0000997819,0.00019775165],"domain_scores_gemma":[0.99913275,0.00014662948,0.00039377194,0.00021686725,0.00004329343,0.00006670921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042444654,0.0001400248,0.00033545244,0.00015137404,0.00012673832,0.000010920388,0.00012771558,0.00011001324,0.00009521641],"category_scores_gemma":[0.00015054933,0.00011969785,0.000039276372,0.0003168296,0.0006536482,0.000052695716,0.00013712859,0.000046571553,0.000053849908],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024357385,0.000058050664,0.46758065,0.0016656932,0.00007746095,0.0000012859525,0.002113491,0.00007909954,0.5203763,0.0028023655,0.0050843093,0.0001369104],"study_design_scores_gemma":[0.00054707297,0.00017522837,0.9854921,0.0002467904,0.00008323794,0.000013924842,0.0018760159,0.006765463,0.0011743878,0.0007444733,0.002560734,0.00032058873],"about_ca_topic_score_codex":0.0000858291,"about_ca_topic_score_gemma":0.000020503514,"teacher_disagreement_score":0.51920193,"about_ca_system_score_codex":0.00016880155,"about_ca_system_score_gemma":0.00001216566,"threshold_uncertainty_score":0.48811367},"labels":[],"label_agreement":null},{"id":"W4366815133","doi":"10.1093/sysbio/syad025","title":"Formalizing Invertebrate Morphological Data: A Descriptive Model for Cuticle-Based Skeleto-Muscular Systems, an Ontology for Insect Anatomy, and their Potential Applications in Biodiversity Research and Informatics","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Academy of Finland; Deutsche Forschungsgemeinschaft; Helsingin Yliopisto","keywords":"Ontology; Biology; Open Biomedical Ontologies; Interoperability; Computer science; Evolutionary biology; Information retrieval; Ontology-based data integration; Ontology alignment; Semantic Web; World Wide Web","score_opus":0.2433630507983301,"score_gpt":0.3531661496033901,"score_spread":0.10980309880506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366815133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92319965,0.00010204317,0.07246911,0.00019652919,0.000039430804,0.0028128654,0.0011101438,0.00004922851,0.000020973841],"genre_scores_gemma":[0.997627,0.000021550428,0.00047557335,0.000088804285,0.0000061071705,0.00078534876,0.0009864599,0.000004796607,0.0000043558903],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99856025,0.00023239845,0.00039192886,0.0003168218,0.00008976699,0.00040886318],"domain_scores_gemma":[0.9991122,0.00025780083,0.00012159417,0.0003613821,0.00004893113,0.00009813275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019144155,0.00013412524,0.00036051183,0.0001298763,0.00031317663,0.00005549783,0.0003345009,0.00018610126,0.000017163371],"category_scores_gemma":[0.00010787265,0.00009819017,0.000028568687,0.00028251886,0.00043254346,0.0002038815,0.00045945283,0.00010183054,0.00001690728],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017859823,0.0025587599,0.5161819,0.12743914,0.0008632826,0.00005149944,0.058289703,0.012389761,0.056953315,0.20864831,0.0135260895,0.0013122762],"study_design_scores_gemma":[0.0008130431,0.00020947991,0.0024035617,0.00006661216,0.000018959936,0.000013199326,0.021704312,0.9726448,0.00004174084,0.0018825176,0.000070647184,0.00013111033],"about_ca_topic_score_codex":0.00037635985,"about_ca_topic_score_gemma":0.0006932331,"teacher_disagreement_score":0.960255,"about_ca_system_score_codex":0.00018816,"about_ca_system_score_gemma":0.000020824837,"threshold_uncertainty_score":0.40040788},"labels":[],"label_agreement":null},{"id":"W4366997662","doi":"10.1093/sysbio/syad026","title":"Hybridization and Transgressive Evolution Generate Diversity in an Adaptive Radiation of<i>Anolis</i>Lizards","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Science Foundation of Sri Lanka; National Institutes of Health; National Science Foundation","keywords":"Biology; Introgression; Anolis; Adaptive radiation; Evolutionary biology; Range (aeronautics); Transgressive segregation; Lineage (genetic); Clade; Reticulate evolution; Coalescent theory; Phylogenetic tree; Ecology; Lizard; Genetics; Quantitative trait locus; Gene","score_opus":0.024068937067454405,"score_gpt":0.24580369193574053,"score_spread":0.22173475486828612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366997662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99529326,0.00010316235,0.0039011769,0.000032391734,0.000115191186,0.0003952574,0.00001363491,0.00002671895,0.00011919483],"genre_scores_gemma":[0.99978685,0.000026373335,0.00009312559,0.000017334876,0.000014663061,0.000016540154,0.00002550403,0.0000034214904,0.000016176726],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989545,0.00040509264,0.00023475719,0.00021065102,0.00005893728,0.00013607717],"domain_scores_gemma":[0.99966025,0.00004287381,0.00014083448,0.00011101244,0.000009569366,0.000035472545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035695825,0.000075933494,0.00023286886,0.00007893441,0.00007050712,0.0000028568934,0.0000861789,0.000111281144,0.00002866523],"category_scores_gemma":[0.000036700676,0.00005971847,0.00002180644,0.00022500411,0.0001807641,0.00007927533,0.00013156292,0.00004024144,0.000031182644],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006886764,0.000056277837,0.91117924,0.0011965433,0.000030796797,0.000007925736,0.0047284462,0.003453507,0.07392736,0.0045180414,0.000043797856,0.0007891789],"study_design_scores_gemma":[0.0008587586,0.0005144316,0.9016629,0.0003632459,0.000046106525,0.000016573335,0.0015436882,0.0858987,0.0025593005,0.0062648687,0.000003903231,0.00026753277],"about_ca_topic_score_codex":0.00021981775,"about_ca_topic_score_gemma":0.00021859448,"teacher_disagreement_score":0.08244519,"about_ca_system_score_codex":0.000078247715,"about_ca_system_score_gemma":0.000007895384,"threshold_uncertainty_score":0.24352486},"labels":[],"label_agreement":null},{"id":"W4378745298","doi":"10.1093/sysbio/syad032","title":"The Major Features of Macroevolution","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Macroevolution; Clade; Phylogenetic tree; Biology; Diversification (marketing strategy); Evolutionary biology; Tree of life (biology); Tree (set theory); Set (abstract data type); Phylogenetics; Variation (astronomy); Computer science; Mathematics","score_opus":0.018245514086103507,"score_gpt":0.2509699964606182,"score_spread":0.23272448237451468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378745298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9356047,0.027973102,0.00024194283,0.0034365696,0.0025766972,0.0010040195,0.00008191466,0.00022166429,0.028859409],"genre_scores_gemma":[0.9993849,0.00006690274,0.000043795008,0.000034043453,0.000026276337,0.000005367108,0.0000143523375,6.5381926e-7,0.00042369997],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991678,0.00028087737,0.00023288852,0.000090615664,0.000056098903,0.00017171804],"domain_scores_gemma":[0.9990521,0.00063653913,0.000114734474,0.0001429287,0.000033868833,0.000019809879],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060156605,0.000057563037,0.00019055244,0.000044254946,0.00020786093,0.000005501505,0.00014683504,0.000061026116,0.000039700677],"category_scores_gemma":[0.00023969097,0.000028761062,0.000044631513,0.00017474736,0.00022072099,0.000013466236,0.00001211584,0.0000530687,0.00028506023],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014328917,0.0000023774053,0.9830105,0.0022072901,0.00010854149,0.0000015183547,0.00037386428,0.000024826397,0.000067696514,0.011714419,0.0020720437,0.0004026268],"study_design_scores_gemma":[0.00007930817,0.000044048997,0.9920746,0.000121479796,0.000018552273,0.000012068126,0.0009176425,0.00077522494,0.000012853795,0.005824561,0.00007690714,0.000042722797],"about_ca_topic_score_codex":0.00032660243,"about_ca_topic_score_gemma":0.014638436,"teacher_disagreement_score":0.063780226,"about_ca_system_score_codex":0.0000012896946,"about_ca_system_score_gemma":0.000011995944,"threshold_uncertainty_score":0.81685907},"labels":[],"label_agreement":null},{"id":"W4384261453","doi":"10.1093/sysbio/syad042","title":"Phylogenomics reveals patterns of ancient hybridization and differential diversification that contribute to phylogenetic conflict in willows, poplars, and close relatives","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Natural Science Foundation of China; National Science Foundation","keywords":"Biology; Phylogenetic tree; Phylogenomics; Evolutionary biology; Phylogenetics; Clade; Subgenus; Salicaceae; Supermatrix; Botany; Woody plant; Taxonomy (biology); Gene; Genetics","score_opus":0.027941690888530827,"score_gpt":0.23254328024091558,"score_spread":0.20460158935238476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4384261453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99798816,0.0003221622,0.00014933861,0.00061869324,0.00014340093,0.0006881141,0.00006400794,0.000020890959,0.000005236271],"genre_scores_gemma":[0.99945897,0.00024014505,0.000022815202,0.00008148812,0.00002629177,0.00003893942,0.000082497085,7.633151e-7,0.00004810419],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99904245,0.0002095016,0.00027205495,0.00026875426,0.00006093052,0.0001463252],"domain_scores_gemma":[0.99960834,0.000080774174,0.00015554274,0.00006363489,0.000045626402,0.00004610501],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036174315,0.00009221635,0.00025745222,0.000048437298,0.000057865236,0.000015827565,0.00007803586,0.00006512349,0.000012891161],"category_scores_gemma":[0.00008505702,0.000041997027,0.000022053537,0.00016509929,0.000048467195,0.000023212648,0.0001321784,0.000033551696,0.0000049231126],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022175507,0.000037734928,0.30970418,0.0012194229,0.000038755054,0.0000011154905,0.0006601285,0.000014774385,0.6831019,0.003921068,0.000048225418,0.001230548],"study_design_scores_gemma":[0.0002152903,0.00014181208,0.9951028,0.0002570804,0.000020992939,0.0000022561644,0.00074420945,0.00016908652,0.0027340862,0.00040447366,0.000104288054,0.00010362715],"about_ca_topic_score_codex":0.00006570262,"about_ca_topic_score_gemma":0.000090865164,"teacher_disagreement_score":0.68539864,"about_ca_system_score_codex":0.000015264071,"about_ca_system_score_gemma":0.0000018242098,"threshold_uncertainty_score":0.17125891},"labels":[],"label_agreement":null},{"id":"W4387661504","doi":"10.1093/sysbio/syad063","title":"Is Over-parameterization a Problem for Profile Mixture Models?","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bayesian Methods and Mixture Models","field":"Computer Science","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Simons Foundation","keywords":"Biology; Evolutionary biology; Statistical physics; Applied mathematics; Computational biology; Mathematics; Physics","score_opus":0.0442729476387585,"score_gpt":0.3134493499119861,"score_spread":0.2691764022732276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387661504","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034760924,0.00012379563,0.9925666,0.0007721493,0.00035821955,0.002032701,0.000021659102,0.00029515437,0.0003536329],"genre_scores_gemma":[0.32707506,0.0000049314,0.6709726,0.00038957945,0.00005173823,0.0010784909,0.000021595684,0.00001409255,0.00039190816],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9984185,0.0002982215,0.00041690492,0.00044513124,0.00009257693,0.00032863076],"domain_scores_gemma":[0.9988446,0.00023368577,0.00019900026,0.00056898466,0.000094868126,0.00005885807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009399497,0.00015707493,0.00042479028,0.00014287926,0.00008901269,0.00007816205,0.0005443354,0.00019928269,0.000004881941],"category_scores_gemma":[0.00007781248,0.00011300661,0.00011419124,0.00043983848,0.000025806145,0.00016961654,0.00017633561,0.00007304692,0.000036542297],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000058114806,0.000025492243,0.00005751698,0.018185457,0.000070797556,0.0000014494101,0.002253206,0.00006180822,0.0056839227,0.96992254,0.0016173521,0.0021146357],"study_design_scores_gemma":[0.00014458668,0.000066860644,0.000015711339,0.0003882364,0.000010749577,0.00000644143,0.000008006742,0.56811523,0.0005442928,0.4305751,0.000019494197,0.0001052712],"about_ca_topic_score_codex":0.000005606449,"about_ca_topic_score_gemma":0.0000010472135,"teacher_disagreement_score":0.5680534,"about_ca_system_score_codex":0.000020505975,"about_ca_system_score_gemma":0.000048773523,"threshold_uncertainty_score":0.46082756},"labels":[],"label_agreement":null},{"id":"W4398144543","doi":"10.1093/sysbio/syae026","title":"Inferring the Evolutionary Model of Community-Structuring Traits with Convolutional Kitchen Sinks","year":2024,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Agricultural Innovations and Practices","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Structuring; Biology; Evolutionary biology; Ecology","score_opus":0.0607697839056698,"score_gpt":0.2600035736286401,"score_spread":0.1992337897229703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398144543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99642503,0.00065868936,0.000345391,0.0015252656,0.000063529,0.0003059206,0.000045136625,0.000054993987,0.0005760488],"genre_scores_gemma":[0.99941194,0.0000038435696,0.00029668535,0.00007828318,0.0000634212,0.00004420546,0.000040150146,6.4219984e-7,0.000060813847],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99902433,0.00033143477,0.0003162247,0.00009896793,0.000096463344,0.00013258371],"domain_scores_gemma":[0.9987511,0.00092672603,0.00013530436,0.000056151945,0.0001103304,0.000020410527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050547277,0.000103867205,0.00019830944,0.000013844232,0.0003018837,0.00003976594,0.00024508117,0.00008900927,0.0000563094],"category_scores_gemma":[0.00006145759,0.00002469292,0.00005039833,0.00028055842,0.00014101766,0.0001301707,0.00008005244,0.0002817205,0.0000064258356],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004664939,0.00011943578,0.004958945,0.009505491,0.00055274094,0.000002423913,0.0036868232,0.0038347405,0.57907456,0.39500138,0.00037595074,0.0028408538],"study_design_scores_gemma":[0.00072284165,0.0020678402,0.5116881,0.014634494,0.00086607266,0.0012126706,0.04135151,0.2191738,0.0056964993,0.19946478,0.001156641,0.00196472],"about_ca_topic_score_codex":0.00016284062,"about_ca_topic_score_gemma":0.000118345066,"teacher_disagreement_score":0.573378,"about_ca_system_score_codex":0.000021720287,"about_ca_system_score_gemma":0.000018069168,"threshold_uncertainty_score":0.23218758},"labels":[],"label_agreement":null},{"id":"W4401701220","doi":"10.1093/sysbio/syae049","title":"Phylogenomics and Pervasive Genome-Wide Phylogenetic Discordance Among Fin Whales (<i>Balaenoptera physalus</i>)","year":2024,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Marine animal studies overview","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Rijksuniversiteit Groningen; Conselho Nacional de Desenvolvimento Científico e Tecnológico; European Commission","keywords":"Biology; Phylogenomics; Phylogenetic tree; Evolutionary biology; Coalescent theory; Lineage (genetic); Phylogenetics; Genome; Subspecies; Clade; Zoology; Genetics; Gene","score_opus":0.010566982880422328,"score_gpt":0.22153111632025752,"score_spread":0.2109641334398352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401701220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9836909,0.012663493,0.0005530887,0.00017280426,0.00019621816,0.00091390574,0.00001810758,0.00007211439,0.0017193625],"genre_scores_gemma":[0.9982361,0.0005418958,0.0005243982,0.00025707623,0.00006226554,0.0001937596,0.0000063961797,0.000025999438,0.00015208544],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982063,0.00021872944,0.00046927348,0.0006051828,0.000114587165,0.00038588894],"domain_scores_gemma":[0.9991495,0.00027963644,0.00012349698,0.0003480197,0.000008554571,0.00009078106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035003293,0.00028114967,0.00056025403,0.000035688252,0.00012208018,0.00007420985,0.00030676057,0.00008999238,0.0002471807],"category_scores_gemma":[0.00009368253,0.00020887192,0.00009500025,0.00017169445,0.00045709455,0.00007985483,0.0008496696,0.0001422639,0.00040966444],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010541182,0.000052992753,0.95855415,0.022779476,0.00027994526,0.00006275426,0.002899408,0.00012000195,0.012077332,0.0015616949,0.00013400266,0.0014677057],"study_design_scores_gemma":[0.00025282655,0.0003084694,0.986455,0.0019515007,0.00020427402,0.000079850666,0.0007295221,0.002895569,0.00021276671,0.005113675,0.0011089217,0.0006876178],"about_ca_topic_score_codex":0.0005213398,"about_ca_topic_score_gemma":0.0011712132,"teacher_disagreement_score":0.02790086,"about_ca_system_score_codex":0.00013236377,"about_ca_system_score_gemma":0.000011031611,"threshold_uncertainty_score":0.85175496},"labels":[],"label_agreement":null},{"id":"W4403854157","doi":"10.1093/sysbio/syae060","title":"Complex Hybridization in a Clade of Polytypic Salamanders (Plethodontidae: <i>Desmognathus</i> ) Uncovered by Estimating Higher-Level Phylogenetic Networks","year":2024,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Museum of Natural History; National Science Foundation","keywords":"Biology; Clade; Evolutionary biology; Phylogenetic tree; Introgression; Sympatric speciation; Range (aeronautics); Ecology; Gene; Genetics","score_opus":0.02985144924104458,"score_gpt":0.27399271645274054,"score_spread":0.24414126721169596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403854157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.79961205,0.00400554,0.19417821,0.00012771074,0.0010632882,0.00066365313,0.000113872964,0.000029550512,0.00020613769],"genre_scores_gemma":[0.9928693,0.000025256646,0.006193406,0.00013624283,0.000098655226,0.000017864424,0.00051209185,0.00001799515,0.00012918159],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99832815,0.00038905587,0.0005618807,0.00038093977,0.000097007534,0.0002429445],"domain_scores_gemma":[0.9993441,0.000082708255,0.00018898804,0.0002804005,0.00005498542,0.000048827824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003113498,0.00019684392,0.00041048304,0.000116246505,0.000044062162,0.000027256805,0.00021000092,0.00029806345,0.000034164317],"category_scores_gemma":[0.000092323375,0.00017795798,0.00009634274,0.0002616263,0.00009797861,0.0000039384477,0.00010956461,0.00011724615,0.0000040596133],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010810088,0.00009446503,0.051093783,0.018061576,0.00049662625,0.000010024429,0.00048263345,0.03925263,0.88079774,0.0047425744,0.0038248454,0.001035024],"study_design_scores_gemma":[0.008881265,0.0027319235,0.17124425,0.015768679,0.0012529601,0.0002994201,0.0016424488,0.72650695,0.050776374,0.01284068,0.003865084,0.00418997],"about_ca_topic_score_codex":0.000042059502,"about_ca_topic_score_gemma":0.00002936085,"teacher_disagreement_score":0.8300213,"about_ca_system_score_codex":0.000021484006,"about_ca_system_score_gemma":0.0000578364,"threshold_uncertainty_score":0.72569156},"labels":[],"label_agreement":null},{"id":"W4407597004","doi":"10.1093/sysbio/syaf012","title":"The Consequences of Budding Speciation on Trees","year":2025,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Clade; Macroevolution; Cladogenesis; Evolutionary biology; Phylogenetic tree; Most recent common ancestor; Genetic algorithm; Taxon; Range (aeronautics); Budding; Paleontology; Phylogenetics; Extant taxon; Ecology","score_opus":0.02150453163894906,"score_gpt":0.26444621038734883,"score_spread":0.24294167874839978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407597004","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8475312,0.010811907,0.0005711167,0.005493748,0.0019751813,0.00066198624,0.000023539522,0.000043871354,0.13288742],"genre_scores_gemma":[0.9995799,0.000052632528,0.000043947835,0.00010162762,0.000014720907,0.0000030473789,0.0000027149395,2.2676906e-7,0.00020114955],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99923205,0.00029873886,0.00025332987,0.00008132509,0.00003897925,0.000095548305],"domain_scores_gemma":[0.9984031,0.0013233329,0.00012984713,0.000104271494,0.00003033353,0.000009144694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045724015,0.000050009192,0.00018830056,0.00004526599,0.00016894654,0.0000069555863,0.00011507424,0.000045964873,0.000036704438],"category_scores_gemma":[0.0003612037,0.000024920453,0.00003120855,0.00009144261,0.00028248143,0.0000107787155,0.000004658676,0.000040582257,0.000032047046],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013490558,0.000003132299,0.90932894,0.00072283484,0.000071255505,3.0093747e-7,0.00014997997,0.000058139052,0.000081204824,0.089046896,0.0001286158,0.0003951856],"study_design_scores_gemma":[0.00014131922,0.00011898391,0.9622521,0.00086758914,0.00003212319,0.0000032261112,0.00208006,0.0010261755,0.00019789807,0.03309847,0.00011966407,0.000062436775],"about_ca_topic_score_codex":0.0001871891,"about_ca_topic_score_gemma":0.011898213,"teacher_disagreement_score":0.1520487,"about_ca_system_score_codex":0.0000021375934,"about_ca_system_score_gemma":0.000021022772,"threshold_uncertainty_score":0.6639482},"labels":[],"label_agreement":null},{"id":"W4408036999","doi":"10.1093/sysbio/syag038","title":"Coalescent-Based Branch Length Estimation Improves Dating of Species Trees","year":2025,"lang":"en","type":"preprint","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Coalescent theory; Concatenation (mathematics); Phylogenetic tree; Tree (set theory); Tree rearrangement; Scalability; Computer science; Supertree; Bayesian probability; Supermatrix; Pipeline (software); Computational biology; Algorithm; Biology; Mathematics; Gene; Artificial intelligence; Combinatorics; Genetics","score_opus":0.01838951120222905,"score_gpt":0.2690022429040188,"score_spread":0.25061273170178977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408036999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96380496,0.006477609,0.02594682,0.00013116638,0.00093359314,0.0014931185,0.00039173715,0.000012109809,0.0008088749],"genre_scores_gemma":[0.99467665,0.00011188443,0.004334345,0.000062934625,0.00011720062,0.00017523469,0.00034082914,0.000014906115,0.0001660239],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980072,0.00028519702,0.0008575457,0.00052789866,0.00008535591,0.00023682755],"domain_scores_gemma":[0.99819124,0.0000857204,0.0007241657,0.0007785405,0.00018534601,0.000034992878],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004208835,0.00033149566,0.00088133133,0.00010561399,0.000065562876,0.000020477979,0.0004175751,0.0004659856,0.000004916951],"category_scores_gemma":[0.00038685914,0.00028055714,0.00023251947,0.000054058244,0.00017845957,3.6459687e-7,0.0007141807,0.00015217719,0.00000167277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003836553,0.00010137013,0.0066353264,0.061141342,0.00075503264,4.4322277e-7,0.00019521102,0.004194481,0.9250608,0.0012104459,0.000112012036,0.00055513426],"study_design_scores_gemma":[0.003480359,0.0016145805,0.038866226,0.027360566,0.0017860883,0.000015361182,0.0014608323,0.04709717,0.86203307,0.013294769,0.00031066907,0.002680302],"about_ca_topic_score_codex":0.000050633214,"about_ca_topic_score_gemma":0.00005457839,"teacher_disagreement_score":0.063027754,"about_ca_system_score_codex":0.000022100838,"about_ca_system_score_gemma":0.00022020949,"threshold_uncertainty_score":0.99996465},"labels":[],"label_agreement":null},{"id":"W4408128784","doi":"10.1093/sysbio/syaf005","title":"Aquatic Biotas of Sundaland Are Fragmented But Not Refugial","year":2025,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Fish Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Environment Research Council; Lembaga Ilmu Pengetahuan Indonesia; Institut de Recherche pour le Développement; Chester Zoo; Bundesministerium für Bildung und Forschung; North of England Zoological Society; National Geographic Society","keywords":"Biology; Ecology; Evolutionary biology","score_opus":0.016325816456957753,"score_gpt":0.23742659947936168,"score_spread":0.22110078302240393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408128784","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99541783,0.0006450116,0.0000161417,0.0022159528,0.0004983963,0.00049284054,0.00004331187,0.000044716515,0.0006258102],"genre_scores_gemma":[0.9989527,0.000020224714,0.000032373973,0.00051029766,0.000045814086,0.000072271345,0.000024875611,4.2960303e-7,0.00034103074],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984754,0.000397853,0.0005473454,0.00027196447,0.000046534915,0.0002609152],"domain_scores_gemma":[0.99871904,0.00079142244,0.0003056644,0.00009698221,0.000058771253,0.000028123768],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004953736,0.00015184667,0.0006957293,0.000030774772,0.00016614479,0.0000069983253,0.0002617798,0.00030990565,0.000119417164],"category_scores_gemma":[0.00049531524,0.000052398686,0.000107243824,0.00021954109,0.00030119985,0.000018274,0.00015430433,0.000112984184,0.000051467876],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012896702,0.00019387763,0.76364803,0.004913473,0.0005921885,0.0000052662294,0.00011029886,9.940351e-7,0.22333626,0.0059674704,0.0008336426,0.0002695133],"study_design_scores_gemma":[0.00064587523,0.0007277417,0.9738104,0.0022185787,0.00022506855,0.000013557544,0.0022550323,0.00014982525,0.012599812,0.006701384,0.00030472383,0.0003480277],"about_ca_topic_score_codex":0.00013388076,"about_ca_topic_score_gemma":0.0007715829,"teacher_disagreement_score":0.21073644,"about_ca_system_score_codex":0.000019528588,"about_ca_system_score_gemma":0.000009879006,"threshold_uncertainty_score":0.23902762},"labels":[],"label_agreement":null},{"id":"W4408347848","doi":"10.1093/sysbio/syaf018","title":"Global Diversity Patterns are Explained by Diversification Rates and Dispersal at Ancient, Not Shallow, Timescales","year":2025,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Toronto","funders":"Centro de Estudos Ambientais e Marinhos, Universidade de Aveiro; United States-Israel Binational Science Foundation","keywords":"Species richness; Ecology; Diversification (marketing strategy); Biological dispersal; Body size and species richness; Biology; Taxon; Biodiversity; Biogeography; Latitude; Extinction (optical mineralogy); Species diversity; Climate change; Geography; Demography; Population; Paleontology","score_opus":0.02010547962301087,"score_gpt":0.2425660625416921,"score_spread":0.22246058291868123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408347848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927481,0.0031585412,0.00071010226,0.0009822234,0.00032524494,0.0002897404,0.00045716437,0.00003841189,0.0012905127],"genre_scores_gemma":[0.9991831,0.00005135969,0.000026040843,0.00039924876,0.000009436144,0.0000030816375,0.00009789288,4.733236e-7,0.00022934219],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99905425,0.0002434366,0.00019311566,0.00025942893,0.00006198378,0.00018778845],"domain_scores_gemma":[0.99946505,0.00020347805,0.000119540884,0.00012604332,0.00003386726,0.00005204293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022126455,0.00011363827,0.0002912788,0.000036488727,0.0004773055,0.0000137370635,0.00014922989,0.00010289913,0.00011060023],"category_scores_gemma":[0.00008812723,0.00008341092,0.00003817371,0.000091428774,0.00019501832,0.00004579633,0.00011839239,0.00003886362,0.00005597412],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002342431,0.000007297071,0.9974044,0.0010352357,0.00006445485,0.0000013699201,0.00022419855,0.0000026530327,0.000015998234,0.00030490075,0.0008861969,0.000029881208],"study_design_scores_gemma":[0.00023792147,0.000029468822,0.9959253,0.00019488344,0.000049517555,0.000004267115,0.0013814118,0.0019349561,0.0000062182926,0.00012172741,0.00002896817,0.000085368534],"about_ca_topic_score_codex":0.0012512163,"about_ca_topic_score_gemma":0.05078879,"teacher_disagreement_score":0.049537573,"about_ca_system_score_codex":0.000017140006,"about_ca_system_score_gemma":0.00000817633,"threshold_uncertainty_score":0.9665318},"labels":[],"label_agreement":null},{"id":"W4408846260","doi":"10.1093/sysbio/syaf021","title":"Massive Inter-species Introgression Overwhelms Phylogenomic Relationships Among Jaguar, Lion, and Leopard","year":2025,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council","keywords":"Jaguar; Leopard; Biology; Introgression; Panthera; Evolutionary biology; Coalescent theory; Phylogenetic tree; Monophyly; Phylogenetics; Clade; Topology (electrical circuits); Zoology; Genetics; Ecology; Gene","score_opus":0.014845774051836276,"score_gpt":0.24261763195250596,"score_spread":0.2277718579006697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408846260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98668087,0.008401564,0.0027198144,0.00026024852,0.00039503071,0.0005867072,0.000017308415,0.000008365133,0.0009301155],"genre_scores_gemma":[0.9984808,0.00024215366,0.00040362976,0.000096415184,0.000093347866,0.00012666464,0.000025780882,0.000011083942,0.00052012445],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99855715,0.00033166574,0.00044777687,0.00039807003,0.00003960351,0.00022574865],"domain_scores_gemma":[0.9991888,0.00009373795,0.00019963585,0.00037808862,0.000090464615,0.000049280476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037004714,0.00020473894,0.00039819902,0.000103313905,0.00019228373,0.00003109813,0.00018114522,0.00024397767,0.000005622613],"category_scores_gemma":[0.00029364563,0.00016107876,0.00008180855,0.00008517811,0.0002688125,0.0000010655734,0.00037410075,0.0001221676,0.0000063078273],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047808946,0.0000368261,0.52914655,0.0023918296,0.00042149844,0.0000016438687,0.0003496328,0.000027817741,0.45876557,0.008187075,0.00044342663,0.00018029948],"study_design_scores_gemma":[0.0025039425,0.0009241051,0.91172767,0.0037247667,0.00048116516,0.000047409078,0.0047678193,0.0007688024,0.052539736,0.018781725,0.0025581794,0.0011746777],"about_ca_topic_score_codex":0.000014248071,"about_ca_topic_score_gemma":0.000058568836,"teacher_disagreement_score":0.40622583,"about_ca_system_score_codex":0.000020958661,"about_ca_system_score_gemma":0.000038961607,"threshold_uncertainty_score":0.6568601},"labels":[],"label_agreement":null},{"id":"W4408997648","doi":"10.1093/sysbio/syaf006","title":"Species Richness and Speciation Rates for all Terrestrial Animals Emerge from a Synthesis of Ecological Theories","year":2025,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Leverhulme Trust","keywords":"Species richness; Biology; Ectotherm; Ecology; Guild; Genetic algorithm; Range (aeronautics); Ecosystem; Macroecology; Macroevolution; Body size and species richness; Character displacement; Global biodiversity; Herbivore; Species diversity; Taxonomic rank; Biodiversity; Taxon; Phylogenetic tree; Habitat; Sympatry","score_opus":0.027735987095951212,"score_gpt":0.28719450819391257,"score_spread":0.25945852109796136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408997648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896907,0.0041799815,0.0010512605,0.0007543085,0.0007065029,0.0006598219,0.00022804829,0.000022693926,0.0027066742],"genre_scores_gemma":[0.9992098,0.000074363605,0.00050042896,0.000052121362,0.00006273784,0.00002672024,0.00002379803,6.7632163e-7,0.000049333517],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988938,0.00036602543,0.00039517228,0.00017319112,0.000035243258,0.00013655139],"domain_scores_gemma":[0.9962426,0.0034291104,0.00018446936,0.000091688555,0.00003322733,0.000018896728],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047028819,0.00009655139,0.0005097503,0.00006369079,0.0000900787,0.000011198089,0.00010299177,0.00012357073,0.00015493722],"category_scores_gemma":[0.0013370418,0.00006062526,0.000051932857,0.000067623674,0.00022460584,0.000023113585,0.000014924181,0.0000349467,0.0000056105723],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009275279,0.0000109383855,0.9806141,0.0011239474,0.00019002635,3.3764107e-7,0.00021348624,0.0000032972596,0.00015092344,0.01743004,0.00008560505,0.000084496496],"study_design_scores_gemma":[0.0002532508,0.000109158995,0.9530772,0.0002459603,0.00012427456,8.840208e-7,0.0014796713,0.0006847751,0.00017041429,0.0437031,0.000073722396,0.00007755982],"about_ca_topic_score_codex":0.00020514532,"about_ca_topic_score_gemma":0.005196969,"teacher_disagreement_score":0.027536923,"about_ca_system_score_codex":0.0000026585542,"about_ca_system_score_gemma":0.000017352153,"threshold_uncertainty_score":0.29000306},"labels":[],"label_agreement":null},{"id":"W4413232635","doi":"10.1093/sysbio/syag040","title":"Modeling Site-and-Branch-Heterogeneity with GFmix","year":2025,"lang":"en","type":"preprint","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Université Paris-Saclay; Dalhousie University; Simons Foundation","keywords":"Computer science","score_opus":0.01835944855441289,"score_gpt":0.26084801387364515,"score_spread":0.24248856531923224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413232635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9647759,0.014007185,0.019231478,0.00008968047,0.0003704324,0.001046818,0.00016115296,0.000011381123,0.00030593597],"genre_scores_gemma":[0.9968727,0.0004290924,0.0018511097,0.00016570931,0.00014240415,0.00031700346,0.000117915086,0.000020427524,0.00008363357],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9979971,0.00031722928,0.0005195399,0.0007904702,0.00006880737,0.00030682876],"domain_scores_gemma":[0.9987385,0.00003651254,0.00020286819,0.0008100337,0.0001426115,0.00006945979],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042121203,0.00040639183,0.00084039464,0.00007402612,0.00011954144,0.00003433281,0.00029842107,0.0005595975,0.0000015336035],"category_scores_gemma":[0.00008747485,0.0003027834,0.00014499969,0.000039182745,0.00011918412,2.8366804e-7,0.0013526726,0.0002580621,0.0000032990602],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005842431,0.00033381517,0.1141483,0.22888717,0.010351953,0.000016451355,0.0022225499,0.08441528,0.5537926,0.004427596,0.00016021966,0.0006598047],"study_design_scores_gemma":[0.021319725,0.010727986,0.01917666,0.101766825,0.015262825,0.0013317446,0.0051600216,0.47717452,0.22758912,0.093744144,0.002095846,0.024650592],"about_ca_topic_score_codex":0.00010961442,"about_ca_topic_score_gemma":0.00022122219,"teacher_disagreement_score":0.39275923,"about_ca_system_score_codex":0.00001667747,"about_ca_system_score_gemma":0.00013034017,"threshold_uncertainty_score":0.9999424},"labels":[],"label_agreement":null},{"id":"W4413332287","doi":"10.1093/sysbio/syaf057","title":"Phylogenetic Resolution and Conflict in the Species-Rich Flowering Plant Family Leguminosae","year":2025,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"Chinese Academy of Sciences; National Natural Science Foundation of China; Institute of Botany, Chinese Academy of Sciences; Kunming Institute of Botany, Chinese Academy of Sciences; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Phylogenetic tree; Phylogenetics; Evolutionary biology; Flowering plant; Botany; Genetics; Gene","score_opus":0.05760506375173012,"score_gpt":0.22854275081717698,"score_spread":0.17093768706544687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413332287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99299735,0.0040623047,0.0000046817313,0.00053533935,0.00006482657,0.00034996434,0.000021471378,0.00001472544,0.0019493304],"genre_scores_gemma":[0.9994972,0.00011957145,0.000007926172,0.00022571132,0.000043825672,0.000040632054,0.000007593756,1.7825748e-7,0.000057367735],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992085,0.00019503596,0.00022199981,0.00015853553,0.000045562516,0.00017033494],"domain_scores_gemma":[0.9994997,0.0004026111,0.000048766768,0.000025189802,0.000012131281,0.00001164548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039543724,0.000089473426,0.00024415026,0.000014732662,0.0001268165,0.00002624461,0.00015597895,0.00006570887,0.0000041621956],"category_scores_gemma":[0.0000613778,0.000025394074,0.000025424135,0.00015323132,0.000066734254,0.000011075303,0.00007536671,0.00006709647,0.0000055253954],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033135708,0.000046557252,0.14054868,0.0017341786,0.000052383588,0.00001202662,0.000707863,0.0000021052804,0.8426808,0.013353013,0.00035399265,0.00047525248],"study_design_scores_gemma":[0.0000885751,0.00009696184,0.99563503,0.00058183796,0.000015671478,0.000012898404,0.0021487041,0.00013017241,0.0002355222,0.0003588331,0.00060970726,0.00008611128],"about_ca_topic_score_codex":0.00013103356,"about_ca_topic_score_gemma":0.0013406521,"teacher_disagreement_score":0.8550863,"about_ca_system_score_codex":0.000009923796,"about_ca_system_score_gemma":0.0000026831854,"threshold_uncertainty_score":0.10355403},"labels":[],"label_agreement":null}]}