{"meta":{"query_hash":"91b44044ed8f","filters":{"venue":"The ISME Journal"},"cohort_total":362,"direct_labels_cover":1,"predictions_cover":362,"exported":362,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/91b44044ed8f","api":"https://metacan.xera.ac/api/v1/cohort?venue=The+ISME+Journal"},"results":[{"id":"W1473667822","doi":"10.1038/ismej.2015.114","title":"Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":174,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Canadian Institutes of Health Research; CH.I.L.D. Foundation; Child and Family Research Institute","keywords":"Nod; NOD mice; Biology; Microbiome; Insulitis; Immunology; Gut flora; Dysbiosis; Diabetes mellitus; Type 1 diabetes; Microbiology; Endocrinology; Bioinformatics","score_opus":0.048720430250938265,"score_gpt":0.28453687155040414,"score_spread":0.23581644129946588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1473667822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99533653,0.002446832,0.000007795632,0.00162747,0.00024021404,0.00022405962,0.000008680179,0.000008040855,0.000100362304],"genre_scores_gemma":[0.9984487,0.0002335579,0.00026988442,0.0004051959,0.00034628197,0.000005248263,0.000024611698,0.0000228499,0.00024364528],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987031,0.00023655387,0.00026486575,0.00022792308,0.000098444114,0.0004690835],"domain_scores_gemma":[0.99934506,0.00002568348,0.00016903187,0.00021584694,0.00008367482,0.00016068821],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067744387,0.00020995083,0.00022702209,0.0000901396,0.00014135783,0.00010194116,0.00032423311,0.00012251092,0.000012974757],"category_scores_gemma":[0.000057970097,0.00013278585,0.00009239912,0.00013529584,0.000098751865,0.00001074096,0.00008997139,0.0002523885,0.000027368582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005824823,0.00015168413,0.058582705,0.000009199429,0.000059436916,0.0000077864215,0.00036524876,0.000011143421,0.93854827,0.0000014470828,0.0010781593,0.0011266653],"study_design_scores_gemma":[0.0021108468,0.0012868361,0.06661586,0.000090224225,0.00005773969,0.00048232102,0.00049758865,0.00003812174,0.9255677,0.000098482604,0.0028631147,0.0002911566],"about_ca_topic_score_codex":0.00004519323,"about_ca_topic_score_gemma":0.0001240675,"teacher_disagreement_score":0.0129805645,"about_ca_system_score_codex":0.00010323628,"about_ca_system_score_gemma":0.00033905057,"threshold_uncertainty_score":0.541485},"labels":[],"label_agreement":null},{"id":"W1480149909","doi":"10.1038/ismej.2015.97","title":"Phylogeny and physiology of candidate phylum ‘Atribacteria’ (OP9/JS1) inferred from cultivation-independent genomics","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Division of Ocean Sciences; Office of International Science and Engineering; Natural Environment Research Council; Natural Sciences and Engineering Research Council of Canada; Office of Science; NERC Biomolecular Analysis Facility; Danmarks Grundforskningsfond; Amazon Web Services; Cardiff University; Sight Research UK; Joint Genome Institute; National Research Foundation; Tula Foundation; National Aeronautics and Space Administration; University of British Columbia; Aarhus Universitet; U.S. Department of Energy; Canadian Institute for Advanced Research; University of Nevada, Las Vegas; National Science Foundation","keywords":"Biology; Phylum; Phylogenetics; Genomics; Evolutionary biology; Computational biology; Genetics; Genome; Gene","score_opus":0.01799314176628334,"score_gpt":0.22785398085140454,"score_spread":0.2098608390851212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1480149909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985492,0.00004737889,0.00007713343,0.00043626502,0.00027883655,0.00008134778,0.00002641279,0.000005260228,0.0004981329],"genre_scores_gemma":[0.9990863,0.000102927246,0.0002071127,0.0003627469,0.00014221364,0.0000015107662,0.000022212378,0.000007120909,0.00006784723],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989756,0.00038927756,0.0002445775,0.00011298198,0.000084981395,0.00019259346],"domain_scores_gemma":[0.9992973,0.00010998741,0.0002447729,0.00023196322,0.000021174994,0.00009476512],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043725575,0.00010854785,0.0002042776,0.00002116644,0.00021956387,0.000015217182,0.00038188705,0.00009647321,0.0012445424],"category_scores_gemma":[0.00004639612,0.00007567717,0.000041932955,0.000060865394,0.0003322579,0.00010359549,0.00034975164,0.0003726877,0.000073068],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015993393,0.000064773885,0.009873828,0.0000015193123,0.00005907866,0.0000020775626,0.0035201432,0.0006606307,0.981534,0.00002618391,0.0032844993,0.0008132975],"study_design_scores_gemma":[0.0013632008,0.0002572712,0.9498252,0.0000065973186,0.000048041376,0.00012095238,0.00061843864,0.00030754646,0.013860871,0.024636453,0.008760875,0.000194501],"about_ca_topic_score_codex":0.0010962232,"about_ca_topic_score_gemma":0.0007860417,"teacher_disagreement_score":0.9676732,"about_ca_system_score_codex":0.000082890816,"about_ca_system_score_gemma":0.000037885235,"threshold_uncertainty_score":0.9996685},"labels":[],"label_agreement":null},{"id":"W1583408120","doi":"10.1038/ismej.2015.86","title":"Microbial DNA records historical delivery of anthropogenic mercury","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of the Environment, Conservation and Parks; Laurentian University; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mercury (programming language); Biology; Pollutant; Ecosystem; Phylogenetics; Population; Ecology; Environmental chemistry; Gene; Genetics","score_opus":0.04040301121883381,"score_gpt":0.2651703563794915,"score_spread":0.2247673451606577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1583408120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923529,0.00043398998,0.00020298857,0.0022738394,0.0009127286,0.00004532724,0.000002409935,0.000007846725,0.0037679954],"genre_scores_gemma":[0.9971493,0.0002310296,0.00036039925,0.00021922872,0.00025255413,6.7723875e-7,3.6086743e-7,0.0000070543438,0.0017793959],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99910456,0.00010034197,0.00024491557,0.00007268337,0.0003076583,0.00016983232],"domain_scores_gemma":[0.99951977,0.000039331426,0.00015911265,0.00012269351,0.000025593503,0.00013351222],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005892124,0.00008038414,0.00013924035,0.000021900521,0.00017472482,0.000013380058,0.00020999633,0.00003128288,0.0013880057],"category_scores_gemma":[0.0000591762,0.0000497403,0.000082089035,0.00011635329,0.00019847356,0.00014428521,0.00010425867,0.00017133252,0.00021297164],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010165101,0.00012174798,0.025767151,0.0000033697272,0.00007637012,0.000012654854,0.0054412656,0.00015362368,0.08912809,0.000023860694,0.860212,0.018958185],"study_design_scores_gemma":[0.0027742437,0.0009883312,0.10737198,0.00006184963,0.0003079341,0.0019508909,0.004413295,0.0001815289,0.042391676,0.004886569,0.8339475,0.00072421314],"about_ca_topic_score_codex":0.0002628772,"about_ca_topic_score_gemma":0.0000378025,"teacher_disagreement_score":0.08160483,"about_ca_system_score_codex":0.00040398072,"about_ca_system_score_gemma":0.00003986287,"threshold_uncertainty_score":0.99952483},"labels":[],"label_agreement":null},{"id":"W1601644125","doi":"10.1038/ismej.2015.95","title":"Microbial and biochemical basis of a Fusarium wilt-suppressive soil","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":531,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Institutes of Health; Rural Development Administration; Deutsche Forschungsgemeinschaft","keywords":"Fusarium oxysporum; Biology; Fusarium wilt; Rhizosphere; Actinobacteria; Fusarium; Streptomyces; Microorganism; Botany; Bacteria; Biotechnology; Microbiology; 16S ribosomal RNA; Genetics","score_opus":0.02561573011739859,"score_gpt":0.2234600173345515,"score_spread":0.19784428721715291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1601644125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99562013,0.00018954511,0.0000030291847,0.0035591926,0.00016749195,0.000029515002,0.00003376803,0.0000050557123,0.00039229472],"genre_scores_gemma":[0.9993346,0.00006357801,0.000037542515,0.00014455685,0.00024312307,5.109021e-7,0.00000773776,3.984843e-7,0.00016796876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994948,0.000079549274,0.00014773413,0.00005833922,0.00008713005,0.00013244251],"domain_scores_gemma":[0.999634,0.00007907459,0.000082231585,0.000033547105,0.00009376011,0.0000773422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026253978,0.000063371444,0.00010016351,0.0000074745876,0.00015907802,0.000055798682,0.00019750657,0.00004372151,0.0001339875],"category_scores_gemma":[0.000049748152,0.000016451584,0.000051568375,0.0000526042,0.0000896278,0.00008942113,0.00009100904,0.00023595885,0.0000102442655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043021493,0.00003778535,0.00019830564,8.068502e-7,0.000014320467,0.0000016292828,0.00020683325,0.0000015960462,0.98530924,0.0000048555303,0.011626694,0.0025548795],"study_design_scores_gemma":[0.00031109303,0.00023748708,0.009103414,0.00003341721,0.0000338694,0.0016867691,0.00143405,0.000045223933,0.9627376,0.00075345865,0.023502855,0.000120760094],"about_ca_topic_score_codex":0.00021163924,"about_ca_topic_score_gemma":0.000031435626,"teacher_disagreement_score":0.022571668,"about_ca_system_score_codex":0.000012458997,"about_ca_system_score_gemma":0.000010638138,"threshold_uncertainty_score":0.14670692},"labels":[],"label_agreement":null},{"id":"W1752495538","doi":"10.1038/ismej.2015.118","title":"Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Tula Foundation; Genome Canada; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Biology; Microcosm; Biomass (ecology); Hemicellulose; Ecology; Botany; Biodiversity; Soil water; Lignin","score_opus":0.04240701837661671,"score_gpt":0.2753665969406254,"score_spread":0.23295957856400867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1752495538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788153,0.000023937651,0.00007665624,0.00025651194,0.0002740775,0.00011227078,9.5347417e-7,0.000005107832,0.0013689762],"genre_scores_gemma":[0.99917626,0.0000040533732,0.000121288285,0.00025805098,0.00006269327,0.0000013511037,0.0000041435346,0.0000068864406,0.00036529318],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99911577,0.00031666458,0.0002172885,0.000073767784,0.0000777901,0.0001987074],"domain_scores_gemma":[0.999385,0.00022363533,0.00014844103,0.00017028926,0.000008884751,0.00006373915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045171313,0.00008578048,0.00014265407,0.000031188425,0.00015562637,0.000013871998,0.00030128684,0.00006624402,0.00031602185],"category_scores_gemma":[0.00009327942,0.00006216643,0.000041674914,0.00009284805,0.0001932047,0.00008525532,0.00012953176,0.00047108618,0.00016015036],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002620993,0.00055339903,0.66234314,0.000034628847,0.00003711341,0.00007829945,0.00380401,0.06914076,0.25106755,0.00022844813,0.010798334,0.001652202],"study_design_scores_gemma":[0.0013199422,0.00036781782,0.9875761,0.000109002336,0.000031073832,0.00037203523,0.000040690367,0.00037926532,0.0052421195,0.004290263,0.00011656696,0.00015510105],"about_ca_topic_score_codex":0.0002997433,"about_ca_topic_score_gemma":0.0031621242,"teacher_disagreement_score":0.32523295,"about_ca_system_score_codex":0.000107044885,"about_ca_system_score_gemma":0.00002366145,"threshold_uncertainty_score":0.34602174},"labels":[],"label_agreement":null},{"id":"W1948422266","doi":"10.1038/ismej.2015.136","title":"Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Water Treatment and Disinfection","field":"Environmental Science","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"American Water (Canada)","funders":"","keywords":"Biology; Community structure; Biofilm; Species evenness; Ecology; Seasonality; Water quality; Operational taxonomic unit; Biomass (ecology); Abundance (ecology); Plankton; Environmental science; Species diversity; Bacteria","score_opus":0.06472257839379345,"score_gpt":0.2708343793845438,"score_spread":0.20611180099075035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1948422266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99837935,0.000037242935,0.00032065203,0.00038860383,0.00012358066,0.000083077946,0.0000042527417,0.000009005717,0.00065422786],"genre_scores_gemma":[0.9997066,0.000004373488,0.00011796869,0.00001189563,0.000037057023,0.0000021854971,0.00002371951,0.0000043936707,0.0000918053],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991819,0.000107114065,0.00020558988,0.000088753826,0.00022786613,0.0001887739],"domain_scores_gemma":[0.9997613,0.000008447893,0.000048561964,0.00009299218,0.00001196587,0.00007674401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070159376,0.00007936549,0.00010491597,0.000015873293,0.000117282645,0.00004737742,0.00007148967,0.00003164098,0.000071985254],"category_scores_gemma":[0.0000054679685,0.000035109064,0.000039677823,0.00006016257,0.0000804895,0.00021547047,0.00007296998,0.00008668729,0.00004129914],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043676115,0.00005490192,0.9822844,0.0000056441695,0.000018016775,0.0000060454586,0.0014110535,0.0001996165,0.014975903,0.00045425206,0.0000915822,0.0004549082],"study_design_scores_gemma":[0.0013112455,0.00016506272,0.9077485,0.000052933956,0.00012173924,0.00032102317,0.0015047285,0.0012502671,0.0754871,0.010983098,0.0008539617,0.00020030502],"about_ca_topic_score_codex":0.0008901045,"about_ca_topic_score_gemma":0.00013644609,"teacher_disagreement_score":0.07453587,"about_ca_system_score_codex":0.00045622556,"about_ca_system_score_gemma":0.0000028373447,"threshold_uncertainty_score":0.1431706},"labels":[],"label_agreement":null},{"id":"W1954456107","doi":"10.1038/ismej.2015.150","title":"A metagenomic window into carbon metabolism at 3 km depth in Precambrian continental crust","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; AngloGold Ashanti; Center for Dark Energy Biosphere Investigations; National Geographic Society; National Science Foundation","keywords":"Firmicutes; Metagenomics; Euryarchaeota; Methanogenesis; Biology; Carbon monoxide dehydrogenase; Acetogenesis; Precambrian; Biosphere; Ecology; Archaea; Methane; Paleontology; Biochemistry","score_opus":0.017472064521288577,"score_gpt":0.24155132097039847,"score_spread":0.2240792564491099,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1954456107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9858655,0.010108489,0.000015970058,0.00072529155,0.0005038012,0.00014099563,0.0000058188293,0.0000018355861,0.0026323248],"genre_scores_gemma":[0.9975113,0.0004937994,0.0002869766,0.00023759122,0.00073354127,0.000008821793,0.0000046125324,0.00002203926,0.0007013006],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998974,0.00014119952,0.00027513897,0.00018621354,0.00014696091,0.00027647862],"domain_scores_gemma":[0.9994118,0.00001056702,0.00013781713,0.00023893267,0.00006804116,0.00013280651],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059044117,0.00016618652,0.00021737932,0.000045815355,0.00012140104,0.00004007038,0.00029989207,0.00007832936,0.0000073062106],"category_scores_gemma":[0.000056281166,0.00011576967,0.00010819018,0.000059195598,0.000088214554,0.0000011993167,0.0002592359,0.00017187154,0.000008206567],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027204948,0.000058306265,0.022492763,0.000004056929,0.00028857193,0.000014590703,0.001671629,0.0004587478,0.9702859,0.00004287555,0.0016474144,0.0027631053],"study_design_scores_gemma":[0.00785489,0.00063158665,0.4598662,0.000029522951,0.00034937615,0.0012135635,0.0026202041,0.00030104927,0.2935039,0.0018334637,0.23086347,0.0009327453],"about_ca_topic_score_codex":0.00021369579,"about_ca_topic_score_gemma":0.0012193641,"teacher_disagreement_score":0.67678195,"about_ca_system_score_codex":0.00005478385,"about_ca_system_score_gemma":0.00010898659,"threshold_uncertainty_score":0.472095},"labels":[],"label_agreement":null},{"id":"W1965487542","doi":"10.1038/ismej.2014.123","title":"New insights into iron acquisition by cyanobacteria: an essential role for ExbB-ExbD complex in inorganic iron uptake","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Institute of Hydrobiology; Chinese Academy of Sciences; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Siderophore; Biology; Cyanobacteria; Synechocystis; Mutant; Photosynthesis; Biophysics; Biochemistry; Bacteria; Gene","score_opus":0.006019502619691283,"score_gpt":0.2177131195034191,"score_spread":0.21169361688372781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965487542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97169054,0.000038104376,0.026730817,0.00047037873,0.00029586753,0.0002155753,0.0000055969226,0.000014281719,0.00053882215],"genre_scores_gemma":[0.997644,0.000019029641,0.0012952724,0.00023523983,0.0005210694,0.000004949611,0.000037508795,0.000022316803,0.0002206268],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99871296,0.00016171132,0.00038816407,0.00019668695,0.0002626974,0.00027781224],"domain_scores_gemma":[0.9993031,0.00005043102,0.00023017633,0.00024204311,0.000007907088,0.0001663439],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005084104,0.00016001303,0.0001997864,0.00003087953,0.00029731094,0.00011795067,0.0003941256,0.00009068009,0.0013888608],"category_scores_gemma":[0.0000117745485,0.00011519143,0.000055962442,0.000099272555,0.000048120964,0.00035700932,0.000081214974,0.00020856192,0.000115831055],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023292686,0.00031442227,0.011784961,0.000041176478,0.00002867129,0.000004420386,0.010413435,0.007033051,0.9195922,0.0014524073,0.016077438,0.033024915],"study_design_scores_gemma":[0.00769577,0.00212001,0.35406902,0.0001895659,0.00018795172,0.00042163258,0.0022348945,0.40616265,0.00939694,0.080809936,0.13505436,0.0016572721],"about_ca_topic_score_codex":0.00051313423,"about_ca_topic_score_gemma":0.0023446367,"teacher_disagreement_score":0.91019523,"about_ca_system_score_codex":0.00020356927,"about_ca_system_score_gemma":0.000021079495,"threshold_uncertainty_score":0.999524},"labels":[],"label_agreement":null},{"id":"W1966273500","doi":"10.1038/ismej.2014.220","title":"A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":271,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of Tennessee, Knoxville; Burroughs Wellcome Fund; U.S. Department of Homeland Security; National Institute for Mathematical and Biological Synthesis; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Ecosystem; Ecology; Marine ecosystem; Microbial ecology; Food chain; Bacteria","score_opus":0.028128751477818893,"score_gpt":0.25625662387298853,"score_spread":0.22812787239516963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966273500","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99779844,0.00003835731,0.0002849775,0.0011079309,0.00024855588,0.0001961966,0.000010094437,0.0000068055124,0.00030864743],"genre_scores_gemma":[0.99882185,0.000046532663,0.0003056077,0.0004963451,0.00008791928,0.0000051055895,2.0807578e-7,0.000010076269,0.00022636288],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941087,0.000064673404,0.00016339631,0.00009774844,0.00012153003,0.00014181084],"domain_scores_gemma":[0.9995396,0.00010277874,0.00011128711,0.00013550787,0.000022432823,0.00008837336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002094698,0.000094716415,0.000111642716,0.000022154889,0.00017197049,0.00006874095,0.00022671738,0.000026516103,0.00005626912],"category_scores_gemma":[0.00011068094,0.00004797583,0.000036407215,0.00009100071,0.00005540436,0.0001173129,0.00017796959,0.00019255455,0.00006691284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023330332,0.00017487582,0.00079551,0.00006630583,0.000059498256,0.000005802679,0.0031280182,0.007064758,0.9797079,0.000035285095,0.006061258,0.0026674732],"study_design_scores_gemma":[0.0067679095,0.008381889,0.08653592,0.0015304058,0.00057558686,0.004359724,0.002086398,0.013559913,0.80420554,0.0029935776,0.06759155,0.0014116012],"about_ca_topic_score_codex":0.00007041408,"about_ca_topic_score_gemma":0.0006460284,"teacher_disagreement_score":0.17550239,"about_ca_system_score_codex":0.000060960072,"about_ca_system_score_gemma":0.000027242615,"threshold_uncertainty_score":0.19563976},"labels":[],"label_agreement":null},{"id":"W1966497610","doi":"10.1038/ismej.2010.117","title":"Genome-scale dynamic modeling of the competition between <i>Rhodoferax</i> and <i>Geobacter</i> in anoxic subsurface environments","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":331,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Office of Science; University of Toronto; Government of Canada; Genome Canada; Ontario Genomics; Ontario Genomics Institute; U.S. Department of Energy","keywords":"Geobacter; Geobacter sulfurreducens; Anoxic waters; Bioremediation; Biology; Geomicrobiology; Microbial ecology; Environmental chemistry; Ecology; Environmental biotechnology; Contamination; Chemistry; Bacteria; Biofilm; Genetics","score_opus":0.0041303126375935775,"score_gpt":0.1928700063472748,"score_spread":0.18873969370968122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966497610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99700195,0.0002447757,0.00200204,0.0004371623,0.00021128345,0.00006895599,0.0000072944767,0.000001607709,0.000024948587],"genre_scores_gemma":[0.9989827,0.00037490783,0.00033788057,0.00003100482,0.00017190646,7.269815e-7,0.000006537851,0.0000086386235,0.00008566594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99950373,0.00004654231,0.00016399394,0.00010111409,0.000072315386,0.00011232578],"domain_scores_gemma":[0.9997117,0.000002415837,0.000070688366,0.00017734288,0.000011278829,0.000026566377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035929334,0.00007508186,0.00008771376,0.000017413302,0.000075852935,0.00001318957,0.00014396856,0.00006577854,0.0000046164378],"category_scores_gemma":[0.000010334102,0.000046666304,0.00003852992,0.000043421343,0.000056533256,0.000004606531,0.00005604442,0.00026980965,7.3129763e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000070197834,0.000011763472,0.0017806666,0.0000037566201,0.000009232842,6.828828e-8,0.0000686996,0.003969685,0.99386966,0.000001746137,0.0000037611264,0.00027393422],"study_design_scores_gemma":[0.0010643798,0.00011548669,0.1991992,0.000052733292,0.000078408026,0.0002845822,0.00015718941,0.0042597842,0.78608614,0.00028974196,0.008099877,0.0003124516],"about_ca_topic_score_codex":0.0000088989955,"about_ca_topic_score_gemma":0.000025412743,"teacher_disagreement_score":0.2077835,"about_ca_system_score_codex":0.0000062074096,"about_ca_system_score_gemma":0.000011707715,"threshold_uncertainty_score":0.19029966},"labels":[],"label_agreement":null},{"id":"W1969319417","doi":"10.1038/ismej.2014.142","title":"Aquatic metagenomes implicate <i>Thaumarchaeota</i> in global cobalamin production","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":204,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cobalamin; Biology; Thaumarchaeota; Metagenomics; Archaea; Ecology; Gene; Genetics; Biochemistry; Vitamin B12","score_opus":0.008388349270352554,"score_gpt":0.2298284601955352,"score_spread":0.22144011092518265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969319417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917669,0.000038378133,0.00022914496,0.0043567545,0.00023536343,0.000099822064,8.4445605e-7,0.000008714191,0.0032640356],"genre_scores_gemma":[0.9986972,0.000041255767,0.00016805464,0.00071231707,0.00009976777,0.0000033593733,0.0000016596161,0.0000040016153,0.00027239003],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99873185,0.00064906036,0.00018501988,0.00010647872,0.00008321266,0.00024437386],"domain_scores_gemma":[0.9995315,0.00007047215,0.00010120633,0.00024773652,0.0000034613226,0.000045613375],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013059108,0.00008211218,0.00012841505,0.000014032234,0.00029710095,0.000014798603,0.00042948968,0.00004387416,0.001019785],"category_scores_gemma":[0.000072633535,0.00005526139,0.000042646774,0.0001635163,0.00028192817,0.000094026625,0.00020024413,0.00036935892,0.00044911148],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004806976,0.0008494245,0.4240342,0.000026480484,0.0001724249,0.000014871608,0.0071123065,0.018989576,0.32039553,0.0036282893,0.083738655,0.14055753],"study_design_scores_gemma":[0.00047730954,0.00020745429,0.8645157,0.000010592361,0.000029186514,0.0004930571,0.00014181451,0.00054468185,0.0010374319,0.09639909,0.035946153,0.00019747786],"about_ca_topic_score_codex":0.00030309,"about_ca_topic_score_gemma":0.002809493,"teacher_disagreement_score":0.44048154,"about_ca_system_score_codex":0.00012458366,"about_ca_system_score_gemma":0.000010894077,"threshold_uncertainty_score":0.9998934},"labels":[],"label_agreement":null},{"id":"W1969533149","doi":"10.1038/ismej.2012.88","title":"Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Killam Trusts; Canada Research Chairs; University of Warwick","keywords":"Biology; Phylogenetic tree; Phylogenetic diversity; Ecology; Phylogenetics; Multivariate statistics; Similarity (geometry); Taxonomic rank; Evolutionary biology; Machine learning; Taxon; Artificial intelligence; Genetics; Computer science; Gene","score_opus":0.035231070652473585,"score_gpt":0.2357202498331112,"score_spread":0.20048917918063763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969533149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98985666,0.009027267,0.0005859707,0.00019959643,0.00016756312,0.00009162168,0.000005134134,7.655495e-7,0.00006539872],"genre_scores_gemma":[0.9973779,0.0015156001,0.00058647577,0.00012769448,0.00035078317,0.0000030545475,0.000010361435,0.000009430824,0.000018703577],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993887,0.00013368968,0.0001917915,0.00005215083,0.00008704749,0.0001465982],"domain_scores_gemma":[0.9995993,0.000017186974,0.00012649303,0.00014422678,0.000067542685,0.000045251625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002010663,0.000098458695,0.000113422306,0.000027315002,0.00026460006,0.000019668329,0.00015381808,0.000035049005,0.000007866356],"category_scores_gemma":[0.000007946356,0.000066089895,0.000046133064,0.000021957792,0.00013625197,0.0000015549397,0.00015556283,0.00008871636,4.695092e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037856327,0.00005104092,0.043344986,0.000014251084,0.00017321757,8.2004945e-8,0.0035861132,0.00010534227,0.94971704,0.00005255671,0.0004729926,0.0024445343],"study_design_scores_gemma":[0.0015914055,0.0005916304,0.5343978,0.000045155877,0.0002515743,0.0001607598,0.0063951947,0.0000948356,0.43063253,0.0017324879,0.023720045,0.00038662765],"about_ca_topic_score_codex":0.000071644376,"about_ca_topic_score_gemma":0.00018797631,"teacher_disagreement_score":0.5190845,"about_ca_system_score_codex":0.000007674425,"about_ca_system_score_gemma":0.000020227246,"threshold_uncertainty_score":0.26950678},"labels":[],"label_agreement":null},{"id":"W1970176721","doi":"10.1038/ismej.2012.50","title":"Targeted recovery of novel phylogenetic diversity from next-generation sequence data","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Ontario","keywords":"Biology; Phylogenetic tree; Lineage (genetic); Evolutionary biology; Phylogenetics; Phylogenetic diversity; UniFrac; Phylum; Ribosomal RNA; Population; 16S ribosomal RNA; Genetics; Gene","score_opus":0.18897077174343974,"score_gpt":0.27694121151365647,"score_spread":0.08797043977021674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970176721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977672,0.00016982856,0.0011958127,0.00027583886,0.00033308056,0.000040068724,0.00006519451,0.000002946812,0.00015001684],"genre_scores_gemma":[0.99759644,0.00012817577,0.0015905893,0.00038546187,0.00019020017,1.9067242e-7,0.00006297609,0.0000028754155,0.000043077565],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993429,0.00022803392,0.00012486718,0.000070038994,0.00008355332,0.00015060548],"domain_scores_gemma":[0.99934506,0.0000873332,0.0001351089,0.00038013203,0.0000062786025,0.000046112793],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00054136774,0.0000577846,0.000086619606,0.000009765341,0.00048636695,0.00000859919,0.0007857669,0.000051707953,0.0039993227],"category_scores_gemma":[0.00003885296,0.00004155916,0.000025120435,0.000056213485,0.0001658097,0.0003417686,0.0012356773,0.00025107645,0.0000691705],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017644375,0.00008138659,0.020869061,4.836606e-7,0.00002280735,2.439001e-7,0.00057824043,0.0010123028,0.9694612,0.000004822014,0.0068297987,0.0011219884],"study_design_scores_gemma":[0.00061021757,0.00015541543,0.9634635,0.000009483663,0.000114328024,0.00009295751,0.00021811499,0.004231892,0.023349607,0.0014015409,0.0061158845,0.00023705636],"about_ca_topic_score_codex":0.0011319409,"about_ca_topic_score_gemma":0.00047408513,"teacher_disagreement_score":0.9461116,"about_ca_system_score_codex":0.000040548057,"about_ca_system_score_gemma":0.000010890417,"threshold_uncertainty_score":0.99691117},"labels":[],"label_agreement":null},{"id":"W1971121414","doi":"10.1038/ismej.2014.41","title":"Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":190,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Rimouski","funders":"Vlaamse regering; Koninklijk Nederlands Instituut voor Onderzoek der Zee; Darwin Center for Biogeosciences; Innoviris; Fonds Wetenschappelijk Onderzoek","keywords":"Bioturbation; Anoxic waters; Sediment; Hydrothermal vent; Sulfur; Pyrite; Environmental chemistry; Intertidal zone; Ecology; Seafloor spreading; Salt marsh; Microbial ecology; Anaerobic oxidation of methane; Oceanography; Biology; Geology; Hydrothermal circulation; Paleontology; Methane; Bacteria; Geochemistry; Chemistry","score_opus":0.004051928599749635,"score_gpt":0.1964755581043199,"score_spread":0.19242362950457026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971121414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764013,0.00009565442,0.0002883752,0.0013992613,0.00017047227,0.00011960749,0.000007721291,0.0000033965805,0.0002753634],"genre_scores_gemma":[0.99932355,0.00009760453,0.000039324885,0.00032556942,0.000112496,8.6117797e-7,0.000017590452,0.000003469648,0.00007951643],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99906176,0.00015141629,0.00022843097,0.00009801393,0.00026587117,0.000194484],"domain_scores_gemma":[0.999663,0.00004021109,0.00014804788,0.000113777,0.000009419345,0.000025542597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010689707,0.000084376334,0.00008897387,0.00001840167,0.0001081997,0.000022875893,0.00037660977,0.000038815655,0.0003402222],"category_scores_gemma":[0.000014349415,0.000044830318,0.000054363034,0.00016021096,0.00009251446,0.00014267198,0.0000149912175,0.00031314758,0.000036347676],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053632106,0.00008197924,0.030515095,0.000008230615,0.0000047142053,0.000001253677,0.0012062368,0.00012328524,0.9497188,0.000010589094,0.014839278,0.0034369228],"study_design_scores_gemma":[0.0016878672,0.00037412348,0.7722451,0.000052098178,0.00007717537,0.00022218702,0.00020898138,0.00057926396,0.19983783,0.00045934215,0.023850339,0.0004056439],"about_ca_topic_score_codex":0.00013169427,"about_ca_topic_score_gemma":0.0004332597,"teacher_disagreement_score":0.74988097,"about_ca_system_score_codex":0.000052662872,"about_ca_system_score_gemma":0.000010881137,"threshold_uncertainty_score":0.37251946},"labels":[],"label_agreement":null},{"id":"W1973890144","doi":"10.1038/ismej.2012.129","title":"Environmental distribution of coral-associated relatives of apicomplexan parasites","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Coral; Ecology; Distribution (mathematics); Apicomplexa; Zoology; Immunology; Malaria; Plasmodium falciparum","score_opus":0.013460797340766299,"score_gpt":0.21587384772867815,"score_spread":0.20241305038791185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973890144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99824244,0.00018226489,0.000081330625,0.00017492124,0.000107290434,0.000058238238,0.00002528094,0.000003907047,0.0011243133],"genre_scores_gemma":[0.9994864,0.000060951283,0.000026381264,0.0000075742414,0.000044758755,0.0000011550485,0.0000054670277,0.000003436183,0.00036386494],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99925625,0.00009123652,0.00023337176,0.00004602401,0.00020844844,0.00016465283],"domain_scores_gemma":[0.9995236,0.000062382656,0.00028904204,0.000076127566,0.0000035704688,0.000045324694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037430637,0.000069727736,0.00013902991,0.000007804445,0.00015021546,0.0000041096764,0.00011931311,0.000021215496,0.0007141486],"category_scores_gemma":[0.000033806286,0.00004172366,0.000066499575,0.0000627843,0.00017461159,0.0001576392,0.00015023028,0.00011033809,0.000044673383],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000119852075,0.00014199378,0.9825704,0.0000022069316,0.000037954003,2.3579044e-7,0.0007825966,0.000021494092,0.012868985,0.00010941282,0.0018416437,0.00161111],"study_design_scores_gemma":[0.00015637137,0.00006714744,0.99607646,0.000010807171,0.000026336711,0.000018466682,0.00033098002,0.000039980117,0.001437962,0.00056833396,0.0012175327,0.000049589544],"about_ca_topic_score_codex":0.000065376524,"about_ca_topic_score_gemma":0.000011419002,"teacher_disagreement_score":0.01350611,"about_ca_system_score_codex":0.00009183184,"about_ca_system_score_gemma":0.0000020782497,"threshold_uncertainty_score":0.78194267},"labels":[],"label_agreement":null},{"id":"W1975173211","doi":"10.1038/ismej.2008.4","title":"Evolutionary loss of the rdar morphotype in <i>Salmonella</i> as a result of high mutation rates during laboratory passage","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of General Medical Sciences; Alberta Heritage Foundation for Medical Research; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; Fondation pour la Recherche Médicale","keywords":"Biology; rpoS; Genetics; Locus (genetics); Phenotype; Population; Mutation rate; Gene; Sigma factor; Mutation; Genotype; Salmonella; Escherichia coli; Gene expression; Bacteria","score_opus":0.004439820067706935,"score_gpt":0.21625645766475404,"score_spread":0.2118166375970471,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975173211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99807435,0.00092587265,0.00008619814,0.00049001287,0.000118730146,0.000070041526,0.000021891963,0.000001882919,0.00021102419],"genre_scores_gemma":[0.9987022,0.00050476973,0.00015646392,0.00008839637,0.00009041405,0.0000015972539,0.0000067966816,0.000008950518,0.00044038924],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991717,0.0001556954,0.00028354675,0.00009033408,0.00018018548,0.000118539625],"domain_scores_gemma":[0.99936736,0.000014638663,0.00022191479,0.00020805691,0.0001591118,0.00002892144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002055847,0.000076313554,0.00009884239,0.000032450815,0.00011951057,0.0000034150419,0.00020506914,0.000073112584,0.000014486082],"category_scores_gemma":[0.000087694985,0.00004990081,0.00006364631,0.0001589002,0.00019075464,0.000004100892,0.000050149567,0.00015901809,0.0000023142168],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027733107,0.000108951346,0.026875732,0.00001871468,0.00005462944,0.000022395281,0.00044326333,0.017062007,0.95337653,0.00012575359,0.0015979818,0.000036686968],"study_design_scores_gemma":[0.0014386517,0.00015897048,0.6912122,0.0000540104,0.00002349786,0.000872521,0.00032488254,0.00052090845,0.30356386,0.0011699497,0.0005199087,0.00014065595],"about_ca_topic_score_codex":0.000047011454,"about_ca_topic_score_gemma":0.000027656313,"teacher_disagreement_score":0.66433644,"about_ca_system_score_codex":0.000021092786,"about_ca_system_score_gemma":0.00019153846,"threshold_uncertainty_score":0.20348959},"labels":[],"label_agreement":null},{"id":"W1975683308","doi":"10.1038/ismej.2008.111","title":"Environmental microarray analyses of Antarctic soil microbial communities","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Lawrence Berkeley National Laboratory; British Antarctic Survey; Office of Science; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Biological and Environmental Research; Nederlands Instituut voor Ecologie; Koninklijke Nederlandse Akademie van Wetenschappen; Natural Environment Research Council; Fonds Québécois de la Recherche sur la Nature et les Technologies; U.S. Department of Energy","keywords":"Biology; Microbial ecology; Ecology; Trophic level; Microbial population biology; Biodiversity; Extreme environment; Ecosystem; Community structure; Taxon; Terrestrial ecosystem; Library; 16S ribosomal RNA; Bacteria; Paleontology","score_opus":0.04408574834676441,"score_gpt":0.27524313154327495,"score_spread":0.23115738319651055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975683308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980672,0.00016027852,0.000038852468,0.00048199494,0.000070581,0.000047035795,0.000009421495,0.0000042897,0.0011203244],"genre_scores_gemma":[0.998339,0.0006637629,0.00018925962,0.00023845235,0.00006594261,9.68215e-7,0.0000021408025,0.000007935169,0.00049252895],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99891657,0.0002468959,0.00020993469,0.00006142535,0.0002498973,0.00031528316],"domain_scores_gemma":[0.9995045,0.00008243565,0.000110552595,0.00020334433,0.0000028154861,0.0000963421],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00039038074,0.00008858269,0.00014152023,0.00003859799,0.0006219503,0.000015024251,0.0005056564,0.000035267152,0.00733881],"category_scores_gemma":[0.000013454654,0.0000575694,0.000093356066,0.0000702132,0.0010909266,0.00014887663,0.00022882158,0.0003969089,0.00034428903],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006268169,0.0001780291,0.123561196,0.000002506922,0.000074992466,0.000035463476,0.0031753571,0.0007282488,0.8610911,0.0000018857064,0.010211719,0.0008768675],"study_design_scores_gemma":[0.0012480281,0.00050550135,0.8111491,0.00001602357,0.000063918655,0.007046522,0.0033273366,0.00027836685,0.1661483,0.0006505635,0.009277631,0.00028868823],"about_ca_topic_score_codex":0.0011177218,"about_ca_topic_score_gemma":0.00032139296,"teacher_disagreement_score":0.6949428,"about_ca_system_score_codex":0.00012258576,"about_ca_system_score_gemma":0.000021908665,"threshold_uncertainty_score":0.9935686},"labels":[],"label_agreement":null},{"id":"W1975847481","doi":"10.1038/ismej.2013.149","title":"Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":213,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Université de Montréal; Espace pour la vie","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies; Genome Canada; ConocoPhillips","keywords":"Rhizosphere; Biology; Phytoremediation; Soil water; Botany; Soil microbiology; Microbial population biology; Bioremediation; Microorganism; Microbial ecology; Bulk soil; Soil contamination; Ecology; Bacteria; Contamination","score_opus":0.012785206578215549,"score_gpt":0.20200135565074134,"score_spread":0.1892161490725258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975847481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947849,0.00017700077,7.599117e-7,0.002999956,0.00023604359,0.00017449513,0.0003740529,0.000017902847,0.001234872],"genre_scores_gemma":[0.99829745,0.00036584027,0.000015375253,0.0004133308,0.0002977759,0.0000064733727,0.00014645967,0.0000013499052,0.00045595536],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999002,0.00022241983,0.0002924161,0.00009032646,0.00012621628,0.0002666521],"domain_scores_gemma":[0.9986189,0.0010657015,0.00009229904,0.00005368904,0.00003645859,0.00013293556],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003247108,0.00012916277,0.00018506116,0.000017714086,0.00033358394,0.00020787033,0.0002781155,0.00010085058,0.008103869],"category_scores_gemma":[0.000033087847,0.000044201915,0.0000517914,0.0001479583,0.000014077707,0.00015903932,0.0000777626,0.0005393707,0.00031266498],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023998463,0.00015451155,0.47409114,0.000013463482,0.00022226103,0.0000622081,0.014896024,0.0000221763,0.37672263,0.0002592298,0.057115152,0.07620121],"study_design_scores_gemma":[0.00039512428,0.0008303492,0.94431186,0.00038831617,0.000063333,0.0011171054,0.008851833,0.0008777144,0.002875708,0.00455621,0.03517204,0.00056039204],"about_ca_topic_score_codex":0.0048229876,"about_ca_topic_score_gemma":0.000835012,"teacher_disagreement_score":0.4702207,"about_ca_system_score_codex":0.000020493124,"about_ca_system_score_gemma":0.0000072192315,"threshold_uncertainty_score":0.99280286},"labels":[],"label_agreement":null},{"id":"W1977044726","doi":"10.1038/ismej.2013.31","title":"Molecular evidence for an active endogenous microbiome beneath glacial ice","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Calgary; National Aeronautics and Space Administration","keywords":"Archaea; Snowball Earth; Biology; Glacial period; Biogeochemical cycle; Ecology; Glacier; Ecosystem; Metagenomics; Earth science; Paleontology; Geology","score_opus":0.07076450702807979,"score_gpt":0.30870009902114326,"score_spread":0.23793559199306347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977044726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99551564,0.000099630706,0.0010976593,0.0016629809,0.00010594415,0.00035478477,0.0000056456215,0.000008493789,0.0011492161],"genre_scores_gemma":[0.9983268,0.000044199347,0.0006535737,0.00058644934,0.00015882489,0.000026191756,0.0000011179999,0.000010903625,0.00019195797],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890846,0.0001454541,0.00012651717,0.00013953325,0.00019722842,0.00048281738],"domain_scores_gemma":[0.9994107,0.0001128306,0.00007187889,0.00017512537,0.000019550698,0.00020992073],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00050800474,0.000087836546,0.000093507326,0.000025055178,0.0004501453,0.00010297041,0.0005576661,0.00004389763,0.0024912106],"category_scores_gemma":[0.00012313058,0.00005708279,0.0000712062,0.00008208141,0.00016610678,0.00055035565,0.0001375955,0.00024231109,0.0007383558],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006123974,0.000052522395,0.0005626379,0.0000015255943,0.000020345446,0.000010872772,0.0005754533,0.00016126792,0.98066354,0.000015495933,0.002225174,0.015649902],"study_design_scores_gemma":[0.0031782833,0.0053895894,0.18447746,0.00006379758,0.00014754217,0.0061472226,0.0015880933,0.0051627522,0.7318334,0.033894103,0.027052576,0.0010651903],"about_ca_topic_score_codex":0.00038329273,"about_ca_topic_score_gemma":0.00013615415,"teacher_disagreement_score":0.24883018,"about_ca_system_score_codex":0.00018499792,"about_ca_system_score_gemma":0.00003663499,"threshold_uncertainty_score":0.99842066},"labels":[],"label_agreement":null},{"id":"W1981038596","doi":"10.1038/ismej.2009.134","title":"Hydrography shapes bacterial biogeography of the deep Arctic Ocean","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":196,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Fisheries and Oceans Canada; Natural Sciences and Engineering Research Council of Canada; ArcticNet; W. M. Keck Foundation","keywords":"Biology; Hydrography; Biogeography; Arctic; Oceanography; Deep sea; The arctic; Microbial ecology; Ecology; Bacteria; Fishery; Genetics","score_opus":0.00603330013738696,"score_gpt":0.1987747543228694,"score_spread":0.19274145418548244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981038596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960936,0.000044560555,0.000011714418,0.002202388,0.0002234877,0.000069309026,0.000002146344,0.000005964277,0.0013468479],"genre_scores_gemma":[0.99873596,0.000047801655,0.00006869275,0.0010285194,0.000094642135,2.0806961e-7,9.909177e-7,0.0000033122556,0.000019842733],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990825,0.00037145973,0.00018191097,0.000067876084,0.00009964365,0.00019658668],"domain_scores_gemma":[0.99949914,0.0000709665,0.0001621643,0.00021878607,0.000007722636,0.00004119775],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00039950013,0.00008599294,0.0001153543,0.000029841975,0.0005186518,0.000016758586,0.00077652023,0.000056788143,0.0040263087],"category_scores_gemma":[0.000017913546,0.00004473826,0.00019002613,0.00024882634,0.00047341737,0.00007279357,0.00013144438,0.00041915252,0.000030290279],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042741856,0.0009185846,0.19040029,0.000009408074,0.0002585304,0.000006711638,0.005477848,0.0023010313,0.75742066,0.0009108723,0.025396766,0.016471868],"study_design_scores_gemma":[0.00033021334,0.00032253112,0.947892,0.000013009185,0.000050109582,0.00016090341,0.00008750385,0.000054382795,0.0024191053,0.041705597,0.0068518505,0.00011277311],"about_ca_topic_score_codex":0.000056517034,"about_ca_topic_score_gemma":0.00012847372,"teacher_disagreement_score":0.7574917,"about_ca_system_score_codex":0.000014845092,"about_ca_system_score_gemma":0.000006521615,"threshold_uncertainty_score":0.99688417},"labels":[],"label_agreement":null},{"id":"W1983327075","doi":"10.1038/ismej.2007.89","title":"The effect of experimental warming on the root-associated fungal community of <i>Salix arctica</i>","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; University of Northern British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; ArcticNet","keywords":"Biology; Botany; Ecology","score_opus":0.03399016213246111,"score_gpt":0.2726453610898822,"score_spread":0.23865519895742107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983327075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99407816,0.00063943374,0.000001829466,0.0007721094,0.00032389286,0.00010434615,0.000084665,0.0000048480456,0.003990716],"genre_scores_gemma":[0.999546,0.00006584459,0.0000014469629,0.00017723894,0.00014328817,2.6642385e-7,0.000014198642,0.0000033496926,0.000048360795],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99827754,0.00079289265,0.00026974513,0.000044000593,0.00035522442,0.0002605765],"domain_scores_gemma":[0.99524593,0.0042021377,0.00024550353,0.00021744147,0.000032420412,0.000056554418],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0052571404,0.000101565725,0.00015131636,0.000023659963,0.0010766485,0.00004705664,0.00049579475,0.000039590886,0.00065002893],"category_scores_gemma":[0.00014059892,0.000039270155,0.000115135284,0.00012527993,0.00022287476,0.00005519383,0.00002598431,0.0006407258,0.000017723847],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001207161,0.00012416046,0.9395155,0.000019385161,0.00021842057,0.000019748582,0.013415695,0.00020812826,0.02910079,0.000070266746,0.0046815285,0.01141926],"study_design_scores_gemma":[0.00097404775,0.002322191,0.8236308,0.00015134447,0.00007791497,0.00020676063,0.009451527,0.0005662954,0.16079131,0.00033840095,0.0013226179,0.00016677073],"about_ca_topic_score_codex":0.001672965,"about_ca_topic_score_gemma":0.0044955304,"teacher_disagreement_score":0.13169052,"about_ca_system_score_codex":0.000010061684,"about_ca_system_score_gemma":0.000015610074,"threshold_uncertainty_score":0.82808185},"labels":[],"label_agreement":null},{"id":"W1984067337","doi":"10.1038/ismej.2014.138","title":"Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":280,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Austrian Science Fund; Deutsche Forschungsgemeinschaft","keywords":"Lichen; Biology; Symbiosis; Thallus; Abiotic component; Ecology; Microbiome; Biotic component; Coevolution; Botany; Bacteria; Bioinformatics","score_opus":0.08217970610783355,"score_gpt":0.22587639236609963,"score_spread":0.1436966862582661,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984067337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99727374,0.000043122447,0.000018911207,0.0018107765,0.00040274515,0.000065831744,0.000014077283,0.000013315328,0.0003574632],"genre_scores_gemma":[0.9990347,0.000018526842,0.0000138828755,0.00028382635,0.00028934385,0.0000026069988,0.00001566537,7.8936205e-7,0.00034067655],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99898213,0.0002903207,0.00028078564,0.000094645795,0.00014909751,0.00020300454],"domain_scores_gemma":[0.9990664,0.00042157032,0.00027718642,0.000031551182,0.00012554538,0.00007772945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007975108,0.000096447504,0.00021342379,0.000008233613,0.00027544354,0.000049109785,0.00020290278,0.00005758015,0.00030050857],"category_scores_gemma":[0.000113435504,0.00003123005,0.00007437455,0.00012164773,0.0000909828,0.0001438067,0.00004274269,0.00027584683,0.000017553733],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018848448,0.00023867365,0.011735798,0.000004178976,0.00016926425,0.000001449052,0.0023053682,0.00006130141,0.97189385,0.0027765948,0.007419838,0.0032051862],"study_design_scores_gemma":[0.0011553017,0.001497921,0.9336396,0.00004778562,0.00008200196,0.00008517509,0.006127831,0.0007708696,0.046136152,0.004705113,0.00537354,0.0003787468],"about_ca_topic_score_codex":0.00004788366,"about_ca_topic_score_gemma":0.000115990086,"teacher_disagreement_score":0.9257577,"about_ca_system_score_codex":0.00004531541,"about_ca_system_score_gemma":0.00001407449,"threshold_uncertainty_score":0.32903582},"labels":[],"label_agreement":null},{"id":"W1984664666","doi":"10.1038/ismej.2013.182","title":"Positive epistasis between co-infecting plasmids promotes plasmid survival in bacterial populations","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Clarendon Fund; University of Oxford; European Commission; Royal Society","keywords":"Plasmid; Biology; Horizontal gene transfer; Genetics; Bacteria; Epistasis; Gene; Experimental evolution; Bacterial genetics; Microbiology; Escherichia coli; Genome","score_opus":0.03478673962152704,"score_gpt":0.31844315524265376,"score_spread":0.2836564156211267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984664666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966984,0.000038064714,0.0001597105,0.0019790304,0.00024104422,0.0002581564,0.000050270708,0.00000743767,0.0005678993],"genre_scores_gemma":[0.9982966,0.000045755813,0.00030858087,0.000034317916,0.0010832723,0.000019016832,0.00007057285,0.000020126126,0.00012172812],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99858516,0.00032957684,0.00030478428,0.0001752409,0.00021282547,0.00039240214],"domain_scores_gemma":[0.999378,0.00009171113,0.00013277333,0.00016993847,0.00012874897,0.00009879061],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058066176,0.00015479175,0.00019615614,0.00006982543,0.00036935168,0.00017342767,0.00024194716,0.00009161688,0.00015029273],"category_scores_gemma":[0.00038046655,0.00010902223,0.00008848488,0.00009311203,0.00012161188,0.000019663055,0.00016412656,0.0003257023,0.000036350513],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000962944,0.00007938067,0.20641908,0.000012170506,0.00026978287,0.000007744303,0.0004724692,0.000051036346,0.7856878,0.000037053775,0.002823727,0.0040434417],"study_design_scores_gemma":[0.0009938872,0.00036567947,0.88680756,0.00004355438,0.000026273283,0.00006743906,0.0003043077,0.000046521218,0.10928731,0.0006242377,0.001192389,0.00024085266],"about_ca_topic_score_codex":0.00016009089,"about_ca_topic_score_gemma":0.000111654444,"teacher_disagreement_score":0.68038845,"about_ca_system_score_codex":0.00005466489,"about_ca_system_score_gemma":0.000091459304,"threshold_uncertainty_score":0.44457975},"labels":[],"label_agreement":null},{"id":"W1990746682","doi":"10.1038/ismej.2013.10","title":"Robust estimation of microbial diversity in theory and in practice","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":448,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Agence Nationale de la Recherche; Burroughs Wellcome Fund","keywords":"Species richness; Biology; Estimator; Relative species abundance; Abundance (ecology); Species diversity; Diversity (politics); Ecology; Metagenomics; Alpha diversity; Diversity index; Biodiversity; Range (aeronautics); Estimation; Statistics; Mathematics","score_opus":0.013563690693644529,"score_gpt":0.26439456878446177,"score_spread":0.2508308780908172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990746682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979556,0.00024166133,0.0005349937,0.0009983628,0.00003899255,0.00007147103,0.0000010554057,5.2776113e-7,0.00015732033],"genre_scores_gemma":[0.99848,0.00024376025,0.00089399127,0.00028894222,0.00003531493,4.1780748e-7,0.0000016189881,0.0000024838719,0.000053477048],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99954575,0.00016507482,0.00011511241,0.000053851487,0.00003341968,0.00008678805],"domain_scores_gemma":[0.99977356,0.000028608445,0.000082966464,0.00006106946,0.000032437634,0.000021330226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006821483,0.000038110476,0.000056112793,0.000029148294,0.00006319238,0.000011476043,0.000075741176,0.00004498492,0.000017801585],"category_scores_gemma":[0.00009065487,0.00002740572,0.000013958419,0.000032940374,0.00004147878,0.000008768571,0.00009424145,0.00013047493,0.000002340659],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031121404,0.00012229831,0.010419812,0.000022105165,0.000024931214,0.0000036153876,0.0018962873,0.0019975754,0.9781817,0.00020712145,0.0020928266,0.004720495],"study_design_scores_gemma":[0.0036823775,0.0004705804,0.93616706,0.00014059577,0.00006371254,0.0010989638,0.0032984659,0.00076353375,0.047962166,0.004078013,0.0019648205,0.00030968673],"about_ca_topic_score_codex":0.00013118441,"about_ca_topic_score_gemma":0.00005277245,"teacher_disagreement_score":0.93021953,"about_ca_system_score_codex":0.000011327316,"about_ca_system_score_gemma":0.00003682357,"threshold_uncertainty_score":0.111757286},"labels":[],"label_agreement":null},{"id":"W1991308477","doi":"10.1038/ismej.2015.2","title":"Aquifer environment selects for microbial species cohorts in sediment and groundwater","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Biological and Environmental Research; Office of Science; Joint Genome Institute; U.S. Department of Energy","keywords":"Biology; Aquifer; Sediment; Environmental DNA; Groundwater; Sampling (signal processing); Ecology; Microbial population biology; Biodiversity; Geology; Paleontology","score_opus":0.02354744706238293,"score_gpt":0.21835315780675485,"score_spread":0.19480571074437192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991308477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967577,0.00007210574,0.00015893143,0.0019068798,0.0001798379,0.00018250504,0.0000017859959,0.0000034684126,0.0007367738],"genre_scores_gemma":[0.9974659,0.00007940875,0.0003770387,0.0008928902,0.00011450412,0.00000621206,0.000003874937,0.00000677932,0.0010533986],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992497,0.00018922883,0.00015369552,0.0000962709,0.00007354025,0.00023756514],"domain_scores_gemma":[0.999682,0.00006805366,0.000057746332,0.00011487113,0.0000034222232,0.00007390847],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00074741483,0.00008919419,0.00012646386,0.000018869005,0.00021322754,0.000024814188,0.0001889264,0.00005549603,0.0015311287],"category_scores_gemma":[0.000011418609,0.000058979545,0.000027891556,0.000029663137,0.00022386776,0.0000856423,0.00019531652,0.00026706807,0.00008829861],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010639726,0.0009904699,0.096244216,0.000016403645,0.00014859663,0.00003938844,0.021393225,0.007380871,0.43945754,0.00041120287,0.42811328,0.004740842],"study_design_scores_gemma":[0.0039646565,0.001459263,0.29829457,0.000022443843,0.00007083748,0.0009897173,0.0009301651,0.00035276287,0.011972292,0.027148617,0.65426666,0.00052799686],"about_ca_topic_score_codex":0.00006905457,"about_ca_topic_score_gemma":0.0003406024,"teacher_disagreement_score":0.42748523,"about_ca_system_score_codex":0.00016272969,"about_ca_system_score_gemma":0.000011882341,"threshold_uncertainty_score":0.9993816},"labels":[],"label_agreement":null},{"id":"W1992744097","doi":"10.1038/ismej.2014.197","title":"Oceanographic structure drives the assembly processes of microbial eukaryotic communities","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Center for Northern Studies; Université Laval","funders":"Institut national des sciences de l'Univers; Natural Sciences and Engineering Research Council of Canada; Centre National de la Recherche Scientifique; Fonds Québécois de la Recherche sur la Nature et les Technologies; Centre National d’Etudes Spatiales; Canada Excellence Research Chairs, Government of Canada; Agence Nationale de la Recherche; ArcticNet; European Space Agency; Compute Canada","keywords":"Oceanography; Water mass; Arctic; Biology; Phytoplankton; Downwelling; Ecology; Salinity; Community structure; Plankton; Microbial population biology; Nutrient; Geology; Upwelling","score_opus":0.008201971909293785,"score_gpt":0.20670463741012837,"score_spread":0.1985026655008346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992744097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99698186,0.00006595164,0.000083278304,0.0015224485,0.00017750305,0.00007460495,0.000005267181,0.000008122582,0.001080951],"genre_scores_gemma":[0.99871784,0.000094452225,0.000090783964,0.0009055853,0.000096269316,6.312635e-7,0.000003863705,0.000007602627,0.00008297076],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99849606,0.00093483477,0.00020839616,0.000052132687,0.00010274195,0.00020585522],"domain_scores_gemma":[0.99885803,0.00052646664,0.00021715743,0.00034125746,0.000025327747,0.000031776966],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006037524,0.00011180638,0.00015952923,0.000026692898,0.0010434957,0.00003228575,0.0011606271,0.00006954969,0.0019181963],"category_scores_gemma":[0.000057016678,0.000057017904,0.00006592707,0.00018128764,0.0010811203,0.00010938139,0.00029494194,0.00075382553,0.000023577622],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038023028,0.0005387222,0.26020956,0.00017354234,0.00048493457,0.000003865673,0.07214662,0.016255187,0.5406224,0.0022563008,0.10168407,0.0052445866],"study_design_scores_gemma":[0.001320103,0.0010674057,0.85046524,0.00013655818,0.00025890174,0.0013756175,0.007615652,0.0005450052,0.022639938,0.081708156,0.032254312,0.0006130987],"about_ca_topic_score_codex":0.00012179903,"about_ca_topic_score_gemma":0.002396728,"teacher_disagreement_score":0.5902557,"about_ca_system_score_codex":0.000014561003,"about_ca_system_score_gemma":0.000024194018,"threshold_uncertainty_score":0.9989942},"labels":[],"label_agreement":null},{"id":"W1993869907","doi":"10.1038/ismej.2013.70","title":"Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Université Laval","funders":"Gordon and Betty Moore Foundation; U.S. Department of Energy; National Science Foundation","keywords":"Intein; Biology; Genetics; Intron; Gene; Metagenomics; Genome; Group I catalytic intron; Homing endonuclease; Evolutionary biology; RNA; RNA splicing","score_opus":0.011875765254601467,"score_gpt":0.21594029519037594,"score_spread":0.20406452993577448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993869907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978796,0.0008899367,0.00025096032,0.0004549628,0.00017123083,0.00022206584,0.000020364521,6.9255805e-7,0.00011015432],"genre_scores_gemma":[0.9952125,0.002707543,0.0014323944,0.00022107897,0.00016336705,0.0000049535483,0.000012507287,0.000008481071,0.00023718309],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989465,0.000101834245,0.00039510877,0.00017717597,0.00014590773,0.00023350511],"domain_scores_gemma":[0.9993364,0.000021361757,0.00024135117,0.0002629787,0.00008215955,0.00005573138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002326403,0.00014277326,0.00018912645,0.000048686805,0.00012038319,0.000037334346,0.00032994928,0.00005931518,0.000052539428],"category_scores_gemma":[0.00003959504,0.00009800581,0.00009782112,0.00007450365,0.000096991454,0.000004160519,0.00047780326,0.00012474698,0.000009814327],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005662936,0.00008062937,0.24283645,0.00001418299,0.00011552448,0.0000066271364,0.00030132884,0.00024069504,0.75404966,0.0000047505423,0.0008057938,0.0014876989],"study_design_scores_gemma":[0.001008654,0.00042195222,0.91887,0.000027226606,0.00005369007,0.00007007887,0.00065228215,0.00005206279,0.07696494,0.00142922,0.00024739958,0.00020253146],"about_ca_topic_score_codex":0.00007308847,"about_ca_topic_score_gemma":0.00003698438,"teacher_disagreement_score":0.67708474,"about_ca_system_score_codex":0.000019305358,"about_ca_system_score_gemma":0.000049800867,"threshold_uncertainty_score":0.3996561},"labels":[],"label_agreement":null},{"id":"W1994689242","doi":"10.1038/ismej.2013.163","title":"Microbial expression profiles in the rhizosphere of willows depend on soil contamination","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":247,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Espace pour la vie; National Research Council Canada","funders":"Genome Canada; ConocoPhillips","keywords":"Rhizosphere; Phytoremediation; Microbial population biology; Microorganism; Biology; Bulk soil; Microbiome; Soil contamination; Contamination; Soil water; Botany; Environmental chemistry; Agronomy; Bacteria; Chemistry; Ecology; Genetics","score_opus":0.014358069556926624,"score_gpt":0.21262700243754834,"score_spread":0.19826893288062172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994689242","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99514973,0.000037034133,0.0000026420942,0.0038026928,0.00009997596,0.00012053572,0.000007937197,0.0000033095644,0.00077614776],"genre_scores_gemma":[0.9993347,0.000037072507,0.000012626884,0.00022492383,0.00012707246,0.0000047598182,0.0000059729705,3.8659314e-7,0.00025246543],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99936855,0.00021006956,0.00015275471,0.000049887683,0.00011182523,0.00010690789],"domain_scores_gemma":[0.9995474,0.00021278596,0.00013538674,0.000038023696,0.00005074488,0.000015616522],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032321565,0.000059775673,0.00007272081,0.0000066415605,0.00023127564,0.00007570199,0.00028711517,0.00003695648,0.0007574472],"category_scores_gemma":[0.000024997413,0.000013861462,0.000050107104,0.00007491177,0.000026329317,0.00015487266,0.00002377379,0.00029220505,0.000035264573],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018555269,0.00007498077,0.00035591106,8.5092273e-7,0.0000029098574,7.73446e-7,0.00027840683,0.000013247015,0.9724824,0.000011764133,0.00966828,0.01709196],"study_design_scores_gemma":[0.0004990018,0.00064067356,0.56355375,0.00028786546,0.000014927579,0.00039387742,0.010325274,0.00016273727,0.40083733,0.00075695105,0.022324115,0.00020345318],"about_ca_topic_score_codex":0.00044965974,"about_ca_topic_score_gemma":0.0005835235,"teacher_disagreement_score":0.571645,"about_ca_system_score_codex":0.000014460246,"about_ca_system_score_gemma":0.000005097363,"threshold_uncertainty_score":0.82935154},"labels":[],"label_agreement":null},{"id":"W1995586202","doi":"10.1038/ismej.2014.93","title":"Magnetosome-containing bacteria living as symbionts of bivalves","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Geomagnetism and Paleomagnetism Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University","keywords":"Biology; Magnetosome; Gammaproteobacteria; Magnetotactic bacteria; Greigite; Symbiosis; Anoxic waters; Host (biology); Biomineralization; Ecology; Zoology; Bacteria; 16S ribosomal RNA; Paleontology; Magnetite","score_opus":0.006771345591520752,"score_gpt":0.22469603678696481,"score_spread":0.21792469119544405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995586202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99107856,0.0016423498,0.000362641,0.00048667847,0.00037044132,0.00006236068,0.0000030502533,0.0000062082718,0.0059876936],"genre_scores_gemma":[0.9960788,0.00044681298,0.00063553336,0.00031516133,0.0007148722,0.0000031487068,0.0000032251507,0.000015585347,0.001786896],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989767,0.0001815403,0.00027486126,0.00014482807,0.00016434875,0.0002576973],"domain_scores_gemma":[0.99930716,0.000067458604,0.00019180326,0.0002733536,0.00008662899,0.00007360163],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006194489,0.00014298798,0.00017643564,0.00003949308,0.00023299253,0.000043656222,0.0003164807,0.000077726734,0.00022451002],"category_scores_gemma":[0.00026938753,0.00009856559,0.0001196744,0.00005530882,0.00012345062,0.0000059712065,0.00015699255,0.00015111626,0.000031914486],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011537827,0.0000644455,0.030572955,0.000033769073,0.00015932956,0.0000026937416,0.0013638033,0.000040410858,0.9466605,0.00034123132,0.0046796035,0.015965858],"study_design_scores_gemma":[0.0018498854,0.005572756,0.7740336,0.00035585175,0.00023968186,0.001392382,0.0015849498,0.000056937577,0.047258973,0.0034628513,0.16335161,0.00084052054],"about_ca_topic_score_codex":0.000025480309,"about_ca_topic_score_gemma":0.000032610424,"teacher_disagreement_score":0.89940155,"about_ca_system_score_codex":0.0000035632995,"about_ca_system_score_gemma":0.00003785013,"threshold_uncertainty_score":0.40193883},"labels":[],"label_agreement":null},{"id":"W1997863428","doi":"10.1038/ismej.2011.96","title":"A ‘universal’ type II chaperonin PCR detection system for the investigation of Archaea in complex microbial communities","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Ben-Gurion University of the Negev; Queen's University; Saskatchewan Health Research Foundation","keywords":"Biology; Archaea; Microbial ecology; Chaperonin; Type (biology); Computational biology; Genetics; Evolutionary biology; Ecology; Microbiology; Bacteria; Gene","score_opus":0.05995846346242977,"score_gpt":0.2255072187892018,"score_spread":0.16554875532677202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997863428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99794924,0.00050949206,0.0010085505,0.00013317128,0.00015554944,0.00013205296,0.0000070635115,9.4185924e-7,0.00010396307],"genre_scores_gemma":[0.9993071,0.00016869833,0.0003100623,0.000047865917,0.000115890245,0.0000040302425,0.0000030860595,0.0000066263856,0.00003663305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99962306,0.00006418036,0.00013724196,0.000042313568,0.00003868151,0.000094533054],"domain_scores_gemma":[0.9996579,0.000022033168,0.0001082503,0.00011529664,0.00008176043,0.000014712273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030537436,0.000059393973,0.00007644385,0.000023727045,0.00027858713,0.0000061225683,0.00018918504,0.000033923858,0.0000045300226],"category_scores_gemma":[0.000007680088,0.000036765912,0.000044161952,0.00003657586,0.00014036565,7.9439076e-7,0.00008704622,0.00007948213,3.2096756e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015089016,0.000010160995,0.0011722329,0.000013687552,0.00007419312,1.4916714e-7,0.0061792242,0.00012695901,0.9911628,0.00019395149,0.00010224991,0.00081355154],"study_design_scores_gemma":[0.0021682621,0.002007313,0.13230623,0.000090558344,0.00015429266,0.0002673371,0.03243302,0.0020172636,0.81981516,0.0010750006,0.0073692747,0.00029630473],"about_ca_topic_score_codex":0.00017100469,"about_ca_topic_score_gemma":0.00045695234,"teacher_disagreement_score":0.17134762,"about_ca_system_score_codex":0.000014165678,"about_ca_system_score_gemma":0.000027936687,"threshold_uncertainty_score":0.21426952},"labels":[],"label_agreement":null},{"id":"W1998088444","doi":"10.1038/ismej.2010.183","title":"Quantification of virus genes provides evidence for seed-bank populations of phycodnaviruses in Lake Ontario, Canada","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Abundance (ecology); Metagenomics; Gene; Relative species abundance; Ecology; Genetics","score_opus":0.06596169085901668,"score_gpt":0.30735392609271917,"score_spread":0.24139223523370248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998088444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99846846,0.00002637864,0.00026005378,0.0005889037,0.0003985732,0.0001590893,0.000029395207,0.0000018274338,0.00006734549],"genre_scores_gemma":[0.99832666,0.00001612993,0.0011549946,0.0000460195,0.000039057046,0.0000063627785,0.000002213807,0.0000048392003,0.00040373194],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99940413,0.000025810967,0.00028785164,0.00007301834,0.00010667647,0.00010251278],"domain_scores_gemma":[0.99947447,0.000090586655,0.00024418253,0.00013706183,0.000025280571,0.000028399583],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024605333,0.00005670277,0.0000915967,0.00002237574,0.00011657122,0.000018865981,0.00019275294,0.000025032015,0.0010225663],"category_scores_gemma":[0.000064407315,0.00004039535,0.00004507161,0.000076302924,0.00007412355,0.00023677049,0.00002765334,0.00017875768,0.0000025993822],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021889735,0.00003491703,0.041270718,0.0000043746386,0.0000048620873,2.920205e-7,0.00032312554,0.0007425038,0.95504194,0.00003075873,0.0006677515,0.0018568542],"study_design_scores_gemma":[0.00009327866,0.00002596752,0.88360035,0.0000377793,0.000018983066,0.000028400535,0.000064309184,0.00010226963,0.104467236,0.0001758927,0.0113332905,0.000052233063],"about_ca_topic_score_codex":0.82187176,"about_ca_topic_score_gemma":0.99913675,"teacher_disagreement_score":0.85057473,"about_ca_system_score_codex":0.00009651825,"about_ca_system_score_gemma":0.00014275993,"threshold_uncertainty_score":0.9998906},"labels":[],"label_agreement":null},{"id":"W1998093483","doi":"10.1038/ismej.2011.102","title":"Bacteriocyte-associated gammaproteobacterial symbionts of the <i>Adelges nordmannianae/piceae</i> complex (Hemiptera: Adelgidae)","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Austrian Science Fund","keywords":"Biology; Candidatus; Hemiptera; Phylogenetic tree; Gammaproteobacteria; Phylogenetics; Aphid; Tingidae; Genome; Zoology; Botany; Genetics; Gene; 16S ribosomal RNA","score_opus":0.048148520436946625,"score_gpt":0.19326105177802033,"score_spread":0.1451125313410737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998093483","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99572283,0.000038643964,4.554697e-7,0.0017454678,0.00091261667,0.00021672169,0.000061749255,0.000022865335,0.0012786338],"genre_scores_gemma":[0.9984547,0.000049973412,0.000030021476,0.0006322366,0.000655294,0.0000055832743,0.00000780775,0.0000021413352,0.00016227455],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981538,0.00033640963,0.0005681484,0.00017850484,0.00036295838,0.0004001503],"domain_scores_gemma":[0.99886775,0.000083071005,0.000637159,0.00012579017,0.00019065349,0.00009557223],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00064313813,0.00021315622,0.00030439376,0.0000123191585,0.0007325726,0.00015093702,0.0010764807,0.00013136269,0.0025695562],"category_scores_gemma":[0.00006334687,0.00005732652,0.0002840946,0.00029720852,0.00025590832,0.00021996883,0.00016964246,0.00033034637,0.000025736364],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001233836,0.0001360046,0.016480133,0.0000033031479,0.00006453682,0.0000023150376,0.0007036559,2.7167053e-7,0.9769189,0.00007161231,0.0011618354,0.0043340595],"study_design_scores_gemma":[0.0002620981,0.00029287004,0.9365858,0.0000809357,0.000046028537,0.000063639025,0.00024279724,0.000003673402,0.05781251,0.00054570596,0.0038821588,0.00018179207],"about_ca_topic_score_codex":0.0007322156,"about_ca_topic_score_gemma":0.00053670007,"teacher_disagreement_score":0.92010564,"about_ca_system_score_codex":0.000038418555,"about_ca_system_score_gemma":0.000027947928,"threshold_uncertainty_score":0.9983422},"labels":[],"label_agreement":null},{"id":"W1998200993","doi":"10.1038/ismej.2008.59","title":"Isolation of <i>Streptomyces</i> sp. PCB7, the first microorganism demonstrating high-affinity uptake of tropospheric H2","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"GDG Environnement; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Armand-Frappier Foundation","keywords":"Microorganism; Microcosm; Biology; Streptomyces; Strain (injury); Soil microbiology; Enzyme; Rhizosphere; Bacteria; Spore; Biochemistry; Microbiology; Environmental chemistry; Ecology; Chemistry; Genetics","score_opus":0.010755919862769194,"score_gpt":0.19466062429961514,"score_spread":0.18390470443684595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998200993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968845,0.00004774997,0.00037559043,0.001080138,0.00014541726,0.000079673584,0.0000045206207,0.0000059102344,0.0013764631],"genre_scores_gemma":[0.9982172,0.00009165403,0.0012383342,0.00030528553,0.00006461625,6.917083e-7,0.000001967208,0.0000066654216,0.00007358473],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901813,0.00025110217,0.0003687199,0.00007510581,0.00011517582,0.00017174125],"domain_scores_gemma":[0.99906707,0.0002071995,0.00041940238,0.0002580723,0.000018322204,0.000029936307],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005137879,0.00009638981,0.0001710335,0.000008795505,0.0009043183,0.000006658316,0.0005538131,0.00007406124,0.0035313037],"category_scores_gemma":[0.000039646286,0.000057096157,0.00008172479,0.00015516672,0.0006616672,0.00009906187,0.00016091777,0.0005005484,0.00004613013],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001030089,0.0002490507,0.067417644,0.0000095193955,0.00007790426,0.000005190978,0.005496737,0.0053650485,0.9045932,0.000168485,0.015363391,0.001150768],"study_design_scores_gemma":[0.00064530666,0.0003653981,0.9413628,0.000021591799,0.00006329061,0.00075855874,0.0006983203,0.00031637782,0.048144266,0.0037233504,0.0037347244,0.00016600113],"about_ca_topic_score_codex":0.00032831635,"about_ca_topic_score_gemma":0.0005899625,"teacher_disagreement_score":0.8739452,"about_ca_system_score_codex":0.000037678477,"about_ca_system_score_gemma":0.000032737327,"threshold_uncertainty_score":0.9973796},"labels":[],"label_agreement":null},{"id":"W1998356702","doi":"10.1038/ismej.2010.108","title":"Microbial ecosystem responses to rapid climate change in the Arctic","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":120,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Center for Northern Studies","funders":"Université Laval","keywords":"Biology; Geomicrobiology; Climate change; Ecosystem; Arctic; Microbial ecology; Ecology; Environmental biotechnology; Bacteria; Genetics","score_opus":0.05297310417861006,"score_gpt":0.26835412407008863,"score_spread":0.21538101989147856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998356702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9814527,0.00021249896,6.6923474e-7,0.015547367,0.0013253364,0.0002084953,0.00044264906,0.000007445907,0.0008028261],"genre_scores_gemma":[0.9937237,0.000324457,0.000025326066,0.0040716603,0.0017909284,0.0000022353722,0.000024244957,0.0000038848348,0.00003358403],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99876565,0.00030242975,0.00021798376,0.000106667976,0.00021456604,0.00039271527],"domain_scores_gemma":[0.99922186,0.0003522777,0.000081433755,0.00021836409,0.000027944443,0.0000981046],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00224294,0.00010937979,0.00012335833,0.00009863879,0.0003987371,0.00023968822,0.0005436042,0.00004960033,0.0060129934],"category_scores_gemma":[0.000053782416,0.000052748783,0.00006505246,0.00019943832,0.000033927234,0.00015296582,0.000018807836,0.00057605305,0.0007309561],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006418298,0.000051926287,0.9122187,0.00004521021,0.000019546149,0.00023787517,0.033070724,0.000034486104,0.007773393,0.00007100749,0.0069345916,0.038900733],"study_design_scores_gemma":[0.0002785489,0.000148968,0.9529269,0.000058746078,0.000014388279,0.0021243596,0.001201287,0.00026076438,0.00006988442,0.00013755551,0.04264209,0.00013655216],"about_ca_topic_score_codex":0.0010055322,"about_ca_topic_score_gemma":0.08175543,"teacher_disagreement_score":0.0807499,"about_ca_system_score_codex":0.0000041129756,"about_ca_system_score_gemma":0.000022378827,"threshold_uncertainty_score":0.99489564},"labels":[],"label_agreement":null},{"id":"W2000424861","doi":"10.1038/ismej.2010.57","title":"Microbial characterization of a subzero, hypersaline methane seep in the Canadian High Arctic","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Biotechnology Research Institute; McGill University","funders":"Canadian Space Agency; Fonds Québécois de la Recherche sur la Nature et les Technologies; Natural Sciences and Engineering Research Council of Canada; McGill University; National Aeronautics and Space Administration","keywords":"Biology; Archaea; Halomonas; Cold seep; Methane; Anaerobic oxidation of methane; Euryarchaeota; Methanogenesis; Extreme environment; Environmental chemistry; Microbial population biology; Microcosm; Temperature gradient gel electrophoresis; Halophile; Ecology; 16S ribosomal RNA; Bacteria; Chemistry","score_opus":0.007083781508416658,"score_gpt":0.19804851667775966,"score_spread":0.190964735169343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000424861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928628,0.0000093576755,0.00001628697,0.005981878,0.00037788815,0.00010854487,0.0000073285355,0.0000018007275,0.0006341176],"genre_scores_gemma":[0.998809,0.00002693395,0.00014387407,0.00060838944,0.00015068683,0.0000015219706,0.000008702014,0.000007589457,0.00024334477],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991235,0.00016658171,0.00021578647,0.00007827323,0.00019978086,0.00021603788],"domain_scores_gemma":[0.9995565,0.000042192005,0.00013450003,0.00016799684,0.000010473722,0.00008837729],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012202048,0.000077410994,0.00010102083,0.000047586982,0.0001554743,0.000035783774,0.0003641175,0.00006683124,0.0032545228],"category_scores_gemma":[0.000030667947,0.00003912501,0.00003951008,0.00022770569,0.00013141813,0.00008438216,0.000027903014,0.0006639172,0.00006746803],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001668284,0.000039460527,0.0056674555,0.0000025656998,0.000014652946,0.000011826373,0.0027812095,0.00032701535,0.9897325,0.00014585585,0.000090277514,0.0011704899],"study_design_scores_gemma":[0.0023591067,0.00029423143,0.89955807,0.00007436346,0.00019750548,0.0022122934,0.0006529463,0.0021651217,0.0473497,0.0072990344,0.03727198,0.00056567934],"about_ca_topic_score_codex":0.075347565,"about_ca_topic_score_gemma":0.13560264,"teacher_disagreement_score":0.9423828,"about_ca_system_score_codex":0.00006716798,"about_ca_system_score_gemma":0.000045075325,"threshold_uncertainty_score":0.99765664},"labels":[],"label_agreement":null},{"id":"W2002452099","doi":"10.1038/ismej.2008.38","title":"Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Office of Science; Vetenskapsrådet; U.S. Department of Energy","keywords":"Biology; Enhanced biological phosphorus removal; Metaproteomics; Population; Proteomics; Activated sludge; Microbial population biology; Biochemistry; Microbiology; Sewage treatment; Genetics; Bacteria; Gene","score_opus":0.028641845860889623,"score_gpt":0.21919396882896863,"score_spread":0.190552122968079,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002452099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979855,0.000032383334,0.000206071,0.0004108888,0.00017026025,0.0006367951,0.000010797154,0.00005063824,0.00049669587],"genre_scores_gemma":[0.9837097,0.00003697141,0.015100637,0.000079194484,0.0001759399,0.000016695683,0.000011181632,0.000024471337,0.0008452014],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978756,0.00060674106,0.00043680234,0.00022825925,0.0003540458,0.0004985542],"domain_scores_gemma":[0.9990741,0.00003919728,0.00032228092,0.0003642732,0.000018731598,0.00018143085],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0008413284,0.00029819843,0.00026747075,0.00003456352,0.0023168419,0.000073888536,0.0006807958,0.00015371846,0.00059088087],"category_scores_gemma":[0.000031078485,0.00016242987,0.00014760891,0.00015653484,0.0003913296,0.0002841289,0.00033603775,0.0010381065,0.00015697876],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037284888,0.00021871847,0.0001094893,0.0000018608736,0.000033871213,0.00020148778,0.0036323532,0.00013089775,0.99443316,0.000009561902,0.0001598598,0.000695899],"study_design_scores_gemma":[0.0010370984,0.00032263823,0.002290508,0.00004664298,0.000017633596,0.0043453528,0.00036450353,0.000058505622,0.99000996,0.00041987465,0.00084409764,0.00024320013],"about_ca_topic_score_codex":0.00016303797,"about_ca_topic_score_gemma":0.000012855799,"teacher_disagreement_score":0.0148945665,"about_ca_system_score_codex":0.00031854375,"about_ca_system_score_gemma":0.000055868255,"threshold_uncertainty_score":0.998982},"labels":[],"label_agreement":null},{"id":"W2005107113","doi":"10.1038/ismej.2014.260","title":"Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Gordon and Betty Moore Foundation; David and Lucile Packard Foundation; National Science Foundation","keywords":"Biology; Prochlorococcus; Abundance (ecology); Photic zone; Seawater; Ecology; Phytoplankton; Particulates; Heterotroph; Synechococcus; Nutrient; Bacteria; Cyanobacteria; Genetics","score_opus":0.02153890452339205,"score_gpt":0.24333335815414223,"score_spread":0.22179445363075018,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005107113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99230766,0.0000044625613,0.000044240758,0.0059470143,0.00017280545,0.00008909055,0.0000023404436,0.000006735075,0.0014256518],"genre_scores_gemma":[0.99438274,0.000007959146,0.00018151286,0.004438058,0.00006082732,0.0000014905991,0.0000033420388,0.000008772455,0.00091527606],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99893266,0.0004069393,0.00023409001,0.00009547896,0.00008645957,0.0002443998],"domain_scores_gemma":[0.999416,0.00006770848,0.00012070069,0.00023834866,0.000026756774,0.000130479],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00047138907,0.00009575948,0.00018083306,0.000023181,0.00014968222,0.0000060856482,0.00044006444,0.000069257076,0.031182654],"category_scores_gemma":[0.000043239965,0.000060640974,0.000047799713,0.00016414763,0.00022766742,0.000055871416,0.0006614619,0.00038714518,0.003511322],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020948803,0.00012267526,0.034173142,0.0000030503375,0.000060662704,0.0000065389763,0.004223828,0.0013633827,0.8588274,0.000015942778,0.10027585,0.0007180252],"study_design_scores_gemma":[0.0010593982,0.0008077566,0.9238096,0.000012641088,0.00004899616,0.0003125854,0.00028131882,0.00022038483,0.024871457,0.023797832,0.024511935,0.000266085],"about_ca_topic_score_codex":0.00017674324,"about_ca_topic_score_gemma":0.00016958102,"teacher_disagreement_score":0.88963646,"about_ca_system_score_codex":0.000056273588,"about_ca_system_score_gemma":0.00002217258,"threshold_uncertainty_score":0.99726456},"labels":[],"label_agreement":null},{"id":"W2005897903","doi":"10.1038/ismej.2013.164","title":"In and out: an analysis of epibiotic vs periplasmic bacterial predators","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Russian Academy of Sciences; Natural Sciences and Engineering Research Council of Canada; Israel Science Foundation","keywords":"Periplasmic space; Biology; Bdellovibrio; Predation; Major facilitator superfamily; Microbiology; Gene; Ecology; Genetics; Escherichia coli; Mutant","score_opus":0.007296292200469872,"score_gpt":0.23345243256543607,"score_spread":0.2261561403649662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005897903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989834,0.000003889685,0.000022223589,0.0004944119,0.0001738634,0.000055692504,0.000016549158,0.0000022412025,0.0002477589],"genre_scores_gemma":[0.9992026,0.000020250167,0.00015082442,0.00010185404,0.000045201596,0.00000114656,0.000002829426,0.0000042777237,0.0004710161],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99947304,0.00006741318,0.00018969279,0.00008314373,0.00006649603,0.00012022373],"domain_scores_gemma":[0.9996921,0.000026308295,0.00010045858,0.0001139094,0.000005489562,0.000061765626],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014123357,0.00006093076,0.00012825595,0.000061972845,0.00007566962,0.000070697766,0.00014047106,0.000027229142,0.03731981],"category_scores_gemma":[0.000011152808,0.00003946066,0.00005169638,0.0001333283,0.00009779248,0.0004571596,0.00006191216,0.00013907798,0.000091144706],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035730325,0.00011323999,0.021636777,0.0000020793218,0.00013157722,0.0000031687553,0.004549348,0.00056086114,0.96705675,0.0000049815317,0.0032358447,0.0026696431],"study_design_scores_gemma":[0.00014873315,0.00007345138,0.9937206,0.000007014347,0.000096442884,0.000050536168,0.00040337612,0.0016476834,0.0020219712,0.00006433555,0.0017001004,0.000065745546],"about_ca_topic_score_codex":0.00080948364,"about_ca_topic_score_gemma":0.00093783333,"teacher_disagreement_score":0.9720838,"about_ca_system_score_codex":0.00005007991,"about_ca_system_score_gemma":0.000004986814,"threshold_uncertainty_score":0.9635602},"labels":[],"label_agreement":null},{"id":"W2008828320","doi":"10.1038/ismej.2013.110","title":"Previously unknown and highly divergent ssDNA viruses populate the oceans","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":180,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; University of British Columbia","funders":"Tula Foundation; Natural Sciences and Engineering Research Council of Canada; Broad Institute; McGill University; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Biology; Genome; Metagenomics; Genetics; Gene; Phylogenetics; Evolutionary biology; Virus; Homology (biology); Viral evolution","score_opus":0.011407539861977713,"score_gpt":0.2225657453973565,"score_spread":0.21115820553537878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008828320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918343,0.00015987907,0.000058102927,0.0062288856,0.0003768712,0.0001371723,0.0000020456764,0.000010841046,0.0011919184],"genre_scores_gemma":[0.99440587,0.00047233488,0.000099224955,0.0014625947,0.0001403385,0.0000032996047,2.9226499e-7,0.00000844587,0.0034076045],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993682,0.000071750306,0.00015776658,0.00008970294,0.00010898268,0.0002035922],"domain_scores_gemma":[0.99963385,0.000030497997,0.00009426563,0.00015042434,0.0000076903925,0.000083267834],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017634413,0.00008985577,0.000071510956,0.000009551053,0.0005994939,0.00019990295,0.0002625334,0.000023104685,0.0055555888],"category_scores_gemma":[0.000009929038,0.000041467192,0.000056227753,0.000054241653,0.0001395856,0.0002950542,0.00018805069,0.0002586052,0.0006169576],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030145271,0.00017865436,0.015549788,0.000005585278,0.00015335149,0.000015843898,0.007202125,0.00042699408,0.66185194,0.00027786035,0.24082436,0.07348336],"study_design_scores_gemma":[0.0002513878,0.00009090588,0.636007,0.000027163305,0.00007528141,0.00083456433,0.00033247855,0.00017232705,0.0015525606,0.0017796296,0.358693,0.00018366934],"about_ca_topic_score_codex":0.00090623624,"about_ca_topic_score_gemma":0.00015438501,"teacher_disagreement_score":0.66029936,"about_ca_system_score_codex":0.000052308296,"about_ca_system_score_gemma":0.0000045103593,"threshold_uncertainty_score":0.99535346},"labels":[],"label_agreement":null},{"id":"W2011203615","doi":"10.1038/ismej.2011.173","title":"Bacterial community dynamics in the hyporheic zone of an intermittent stream","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Soil and Water Nutrient Dynamics","field":"Environmental Science","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Golder Associates (Canada); The Scarborough Hospital; University of Toronto","funders":"Centre for Global Change Science, University of Toronto; Natural Sciences and Engineering Research Council of Canada; University of Toronto","keywords":"Hyporheic zone; Sediment; STREAMS; Surface water; Ecology; Biology; Pore water pressure; Hydrology (agriculture); Community structure; Biodiversity; Anoxic waters; Environmental science; Geology","score_opus":0.026652860654106103,"score_gpt":0.22109893473902062,"score_spread":0.19444607408491452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011203615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966165,0.0000031488685,0.00012511252,0.0002082784,0.00021613759,0.00007162366,0.0000060586553,0.0000049876962,0.0027481408],"genre_scores_gemma":[0.9995776,0.000015597738,0.00020076486,0.00010819923,0.000047332385,0.0000016474066,0.0000046720293,0.000006626666,0.00003760705],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988251,0.000480116,0.00024828617,0.000057148132,0.00021740925,0.00017198821],"domain_scores_gemma":[0.9994158,0.000047930745,0.00014254233,0.00034147795,0.000006427941,0.000045792574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001147464,0.00008726356,0.00010445784,0.000023620158,0.00019215498,0.000028142571,0.0009053094,0.000035405556,0.00017208606],"category_scores_gemma":[0.000011993092,0.00004390412,0.000052000178,0.000104189676,0.00023566013,0.00018287665,0.00017715126,0.0005251956,0.000017945998],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034411257,0.001941164,0.88034827,0.000007945465,0.00004020109,0.00004502341,0.048457775,0.0002715519,0.0005002478,0.00042024997,0.00034221917,0.06728126],"study_design_scores_gemma":[0.00074808294,0.0005118284,0.9548172,0.000025364445,0.00003145086,0.00042822922,0.00986756,0.0077561974,0.00026459337,0.025268737,0.00014093511,0.00013986889],"about_ca_topic_score_codex":0.001653731,"about_ca_topic_score_gemma":0.0010239654,"teacher_disagreement_score":0.0744689,"about_ca_system_score_codex":0.000119977645,"about_ca_system_score_gemma":0.000006936799,"threshold_uncertainty_score":0.24999575},"labels":[],"label_agreement":null},{"id":"W2011422030","doi":"10.1038/ismej.2008.43","title":"Numbers, biomass and cultivable diversity of microbial populations relate to depth and borehole-specific conditions in groundwater from depths of 4–450 m in Olkiluoto, Finland","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Vetenskapsrådet; University of Toronto","keywords":"Groundwater; Biomass (ecology); Borehole; Microorganism; Environmental chemistry; Geomicrobiology; Biology; Methane; Anoxic waters; Microbial population biology; Nitrate; Ecology; Hydrology (agriculture); Environmental science; Bacteria; Geology; Chemistry; Paleontology","score_opus":0.026164982854667528,"score_gpt":0.23021965179124843,"score_spread":0.2040546689365809,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011422030","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99866366,0.00016561827,0.00007769795,0.00028796418,0.00006119582,0.000116356714,0.00001874623,0.000001732943,0.0006070177],"genre_scores_gemma":[0.9985257,0.00023475685,0.0010320061,0.00002593661,0.0000140744905,8.1600695e-7,0.000004908673,0.0000048628654,0.00015695518],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99925816,0.00009584091,0.0002567637,0.00011835647,0.00012738528,0.00014347647],"domain_scores_gemma":[0.9996789,0.0000464764,0.00010622193,0.00009195441,0.000006199522,0.00007023897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021525926,0.00007872859,0.00015261142,0.00006774318,0.00022162324,0.000010177755,0.00011223049,0.000055543645,0.00041061128],"category_scores_gemma":[0.0000072876314,0.00005475365,0.000026433487,0.00019142253,0.00020052468,0.00014066756,0.00019429003,0.00019860118,0.000011310319],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042832235,0.00008238044,0.9568142,0.0000023656207,0.000014346911,0.000018218403,0.005963054,0.0014674821,0.03473363,0.000021226877,0.0007361072,0.00010413865],"study_design_scores_gemma":[0.0008216962,0.000043707754,0.99478006,0.000038476446,0.000012463311,0.00007853423,0.00023861535,0.00010665322,0.0011656659,0.002334776,0.0003059151,0.00007344894],"about_ca_topic_score_codex":0.0040894877,"about_ca_topic_score_gemma":0.0010954136,"teacher_disagreement_score":0.03796583,"about_ca_system_score_codex":0.000050573843,"about_ca_system_score_gemma":0.0000054432985,"threshold_uncertainty_score":0.618211},"labels":[],"label_agreement":null},{"id":"W2012159765","doi":"10.1038/ismej.2009.95","title":"Phase variation has a role in <i>Burkholderia ambifaria</i> niche adaptation","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; Université de Montréal; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; College of Engineering, Michigan State University; Université de Lyon; Fonds Québécois de la Recherche sur la Nature et les Technologies; Armand-Frappier Foundation; Medical School, University of Michigan; Michigan State University","keywords":"Biology; Niche; Adaptation (eye); Variation (astronomy); Phase variation; Ecology; Evolutionary biology; Burkholderia; Ecological niche; Genetics; Bacteria; Phenotype; Habitat; Gene","score_opus":0.036595623272928195,"score_gpt":0.3343271385809143,"score_spread":0.2977315153079861,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012159765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9307906,0.001419453,0.025103914,0.039637152,0.00026775166,0.0005817273,0.0000050486256,0.000048113325,0.0021462154],"genre_scores_gemma":[0.99470264,0.00009818338,0.0038027635,0.0007059924,0.00041399343,0.00000515741,0.0000044220697,0.000010115211,0.0002567501],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99863017,0.00014138232,0.00032873746,0.0001199183,0.0005007723,0.00027904072],"domain_scores_gemma":[0.99932885,0.000109557324,0.00013284192,0.0001901251,0.00011060433,0.00012802907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009092148,0.00010048303,0.00018183529,0.00013539758,0.000169572,0.00012254436,0.00013644832,0.00004620177,0.00017040593],"category_scores_gemma":[0.00045455983,0.00006567392,0.00006271825,0.00028810816,0.00004703984,0.00024900583,0.000014325779,0.0005391827,0.00003421422],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025086717,0.0015227095,0.00022182961,0.00001647692,0.000061684,0.00014014021,0.0064033796,0.001804009,0.7736439,0.00060582446,0.0047971983,0.20827414],"study_design_scores_gemma":[0.07261638,0.01557728,0.39016548,0.0012833603,0.00047607752,0.0065522245,0.005646049,0.2666303,0.03875777,0.1283311,0.07300359,0.00096039113],"about_ca_topic_score_codex":0.00005003049,"about_ca_topic_score_gemma":0.000020038193,"teacher_disagreement_score":0.73488617,"about_ca_system_score_codex":0.00014300348,"about_ca_system_score_gemma":0.00023467338,"threshold_uncertainty_score":0.2678105},"labels":[],"label_agreement":null},{"id":"W2012319221","doi":"10.1038/ismej.2009.23","title":"Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Euryarchaeota; Archaea; Crenarchaeota; Biology; Arctic; Phylum; Deep sea; Ecology; Thaumarchaeota; Metagenomics; Oceanography; Environmental DNA; Paleontology; Biodiversity; Fishery; Bacteria; Gene; Genetics; Geology","score_opus":0.014627749118420458,"score_gpt":0.24125801513562498,"score_spread":0.2266302660172045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012319221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9814396,0.000045742643,0.00020640624,0.014969906,0.00006364369,0.000118455464,0.0000014744239,0.000008543742,0.0031462624],"genre_scores_gemma":[0.99371284,0.00009408054,0.00015040854,0.0057232096,0.000058106943,0.0000011074178,0.0000037201946,0.0000049334817,0.0002515752],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980242,0.001212156,0.00021112109,0.00010021597,0.00012858084,0.00032370657],"domain_scores_gemma":[0.9992924,0.0002814383,0.00013069264,0.00023921179,0.0000063284106,0.000049976836],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013293143,0.00011637334,0.00013711725,0.000024274565,0.0005259209,0.000034743596,0.00088143046,0.00007770002,0.0009880745],"category_scores_gemma":[0.00005162537,0.00006519329,0.000057165278,0.00014071362,0.00024048584,0.00012273178,0.00009822202,0.0011564477,0.000074478594],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038880922,0.00073899515,0.043816958,0.000013252057,0.00010045485,0.0003013793,0.042513434,0.02152922,0.5890529,0.0037431575,0.29230163,0.0054998356],"study_design_scores_gemma":[0.0015832423,0.0010640022,0.72927094,0.0000674089,0.000055577544,0.0021876935,0.0053069554,0.0011047664,0.00204507,0.24440853,0.012321065,0.00058475696],"about_ca_topic_score_codex":0.0002428094,"about_ca_topic_score_gemma":0.0004831471,"teacher_disagreement_score":0.68545395,"about_ca_system_score_codex":0.00017004088,"about_ca_system_score_gemma":0.000028831319,"threshold_uncertainty_score":0.99992514},"labels":[],"label_agreement":null},{"id":"W2013291904","doi":"10.1038/ismej.2013.1","title":"Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":214,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; National Research Council Canada","funders":"Natural Resources Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Betaproteobacteria; Biology; Soil water; Actinobacteria; Ecology; Proteobacteria; Environmental science; Environmental chemistry; Chemistry; 16S ribosomal RNA; Bacteria","score_opus":0.0063992172685055524,"score_gpt":0.19559515123623405,"score_spread":0.1891959339677285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013291904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985255,0.0000768414,0.000062461826,0.0008731496,0.0001338948,0.00011229658,6.192131e-7,0.0000036669196,0.00021158977],"genre_scores_gemma":[0.9996001,0.00009987705,0.00008171754,0.00011902364,0.00003933832,0.000004886368,0.0000043746386,0.0000029462926,0.00004775348],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994386,0.00018962593,0.00011934069,0.000069121576,0.00005026657,0.0001330359],"domain_scores_gemma":[0.9997558,0.0000770227,0.00005767209,0.00007062003,0.0000026638959,0.000036246285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002111817,0.000058452708,0.00008660163,0.000014114879,0.00028676388,0.000040658324,0.0000900523,0.00003715253,0.00031284898],"category_scores_gemma":[0.000012184495,0.00004119656,0.000015080555,0.000043073956,0.00011358361,0.00023325205,0.00010242591,0.00023516553,0.0000126084415],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017181717,0.00022193773,0.16367817,0.000018214721,0.000046760033,0.000006515669,0.005883951,0.0004900374,0.8230378,0.00016582878,0.0025335266,0.0037454301],"study_design_scores_gemma":[0.0008686719,0.00014694469,0.97926515,0.00004502158,0.000021630953,0.00011657646,0.00021289744,0.002050372,0.00094901747,0.015832879,0.000373931,0.00011687688],"about_ca_topic_score_codex":0.0004794309,"about_ca_topic_score_gemma":0.0001944484,"teacher_disagreement_score":0.8220888,"about_ca_system_score_codex":0.000055733322,"about_ca_system_score_gemma":0.0000036618474,"threshold_uncertainty_score":0.34254768},"labels":[],"label_agreement":null},{"id":"W2013302273","doi":"10.1038/ismej.2014.71","title":"Facets of diazotrophy in the oxygen minimum zone waters off Peru","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal ecosystems","field":"Earth and Planetary Sciences","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Max-Planck-Gesellschaft; Deutsche Forschungsgemeinschaft","keywords":"Diazotroph; Biology; Nitrogen fixation; Nitrogenase; Cyanobacteria; Ecology; Anammox; Trichodesmium; Oxygen minimum zone; Biogeochemical cycle; Denitrification; Upwelling; Nitrogen; Denitrifying bacteria; Paleontology; Bacteria","score_opus":0.008704445351854384,"score_gpt":0.18182404062274365,"score_spread":0.17311959527088927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013302273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9843284,0.00016940436,0.00008000262,0.0018843911,0.00023636084,0.00006938221,0.0000063876796,0.0000031991613,0.013222468],"genre_scores_gemma":[0.9988931,0.00007506666,0.000026331005,0.00032801917,0.00024577987,3.017042e-7,0.0000031716754,0.0000017965432,0.00042647705],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989724,0.00026391837,0.00023208509,0.00006674365,0.0002684961,0.00019631411],"domain_scores_gemma":[0.9995473,0.00012252975,0.00010846529,0.00015511569,0.000019513587,0.000047073554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001066913,0.00007517847,0.0001311747,0.00004436584,0.000119764234,0.000059571776,0.00043319463,0.000025881433,0.000574768],"category_scores_gemma":[0.00002097875,0.000032672902,0.000062848965,0.00010271253,0.00004350238,0.000087198016,0.000014382223,0.00021940429,0.000083999046],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000268813,0.00011128661,0.49759522,0.000079864396,0.00011731405,0.000054397642,0.014849085,0.0111395065,0.0009494355,0.0003960338,0.01436077,0.46007827],"study_design_scores_gemma":[0.00076017814,0.0005212886,0.902454,0.00004823937,0.00003028639,0.00047197356,0.0030966129,0.019621128,0.00012429693,0.0026143566,0.070057414,0.00020023121],"about_ca_topic_score_codex":0.0010335225,"about_ca_topic_score_gemma":0.0017285901,"teacher_disagreement_score":0.45987803,"about_ca_system_score_codex":0.0000017215765,"about_ca_system_score_gemma":0.000020546047,"threshold_uncertainty_score":0.6293307},"labels":[],"label_agreement":null},{"id":"W2018417018","doi":"10.1038/ismej.2012.89","title":"Ecology of uncultured <i>Prochlorococcus</i> clades revealed through single-cell genomics and biogeographic analysis","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Broad Institute; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Prochlorococcus; Biology; Clade; Prophage; Microbial ecology; Genome; Ecology; Evolutionary biology; Gene; Phylogenetics; Genetics; Cyanobacteria; Synechococcus; Bacteria","score_opus":0.013997445456730463,"score_gpt":0.21457493776380632,"score_spread":0.20057749230707586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018417018","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99719906,0.00039902466,0.000105852814,0.0004745302,0.00010739896,0.000083886625,0.000007057038,0.0000061020173,0.0016170659],"genre_scores_gemma":[0.997972,0.0003613951,0.0007561583,0.0007071826,0.00007021775,0.0000016207393,0.0000065412837,0.0000059279014,0.000118970325],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988636,0.00041055348,0.0002628712,0.000092503615,0.00006832528,0.0003021716],"domain_scores_gemma":[0.9992644,0.00016422261,0.0002707123,0.0002148648,0.000013062842,0.000072735325],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006198025,0.000114421,0.00026478266,0.000047391506,0.00040530562,0.000011853911,0.0003488265,0.0001299911,0.0015135715],"category_scores_gemma":[0.000019355424,0.00007441891,0.0001319429,0.0003619442,0.0005614835,0.000155451,0.00022911065,0.0004005401,0.000032049767],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008359859,0.00038019405,0.4457194,0.000008949286,0.0003771033,0.0000011434613,0.006000948,0.0005441506,0.54142004,0.00010155321,0.005127388,0.00023555475],"study_design_scores_gemma":[0.0009861952,0.00043825468,0.93669444,0.00000673605,0.001393064,0.0002613741,0.0012794038,0.000050783125,0.018925179,0.00972832,0.029869862,0.00036637514],"about_ca_topic_score_codex":0.000094508876,"about_ca_topic_score_gemma":0.0005056447,"teacher_disagreement_score":0.52249485,"about_ca_system_score_codex":0.00004160688,"about_ca_system_score_gemma":0.0000079624915,"threshold_uncertainty_score":0.9993992},"labels":[],"label_agreement":null},{"id":"W2020709279","doi":"10.1038/ismej.2013.145","title":"The (d)evolution of methanotrophy in the <i>Beijerinckiaceae</i>—a comparative genomics analysis","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Genome Alberta; Joint Genome Institute; Genome Canada; U.S. Department of Energy; Alberta Innovates; Canada School of Energy and Environment","keywords":"Biology; Methylotroph; Methanotroph; Alphaproteobacteria; Generalist and specialist species; Phylogenetics; Obligate; Phylogenetic tree; Genome; Gene family; Evolutionary biology; Genetics; Gene; Ecology; Anaerobic oxidation of methane","score_opus":0.009676503451642981,"score_gpt":0.23343082877607838,"score_spread":0.2237543253244354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020709279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99022543,0.0022609967,0.0059410427,0.0008943822,0.00019611295,0.00013460398,0.000006397722,0.0000012521698,0.00033979976],"genre_scores_gemma":[0.99856126,0.0005978388,0.00016050684,0.0001678704,0.00030817732,0.000007169537,0.00000514166,0.00000457132,0.00018744686],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99905163,0.0003411019,0.00024710243,0.000086423235,0.00011968399,0.00015403357],"domain_scores_gemma":[0.9993795,0.000042078264,0.00018465052,0.000271523,0.00009947014,0.000022792085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007329503,0.000084693034,0.00013416362,0.000046084268,0.00022348181,0.00004598959,0.00036422684,0.000049314254,0.000022943119],"category_scores_gemma":[0.00002901021,0.000037776634,0.00015134674,0.00030326127,0.00010821543,0.000006562462,0.000049531125,0.00018888325,0.00001018783],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079917285,0.00004219501,0.00068729394,0.0000020820373,0.00037846694,2.859621e-7,0.00090100465,0.0044935136,0.9807581,0.000390507,0.011385152,0.00088148296],"study_design_scores_gemma":[0.0025386226,0.0008636751,0.2882044,0.000024180383,0.0020621216,0.00031310687,0.020596443,0.0044217026,0.3261031,0.008202446,0.34591702,0.0007532118],"about_ca_topic_score_codex":0.00019083213,"about_ca_topic_score_gemma":0.00015461651,"teacher_disagreement_score":0.65465504,"about_ca_system_score_codex":0.000022784143,"about_ca_system_score_gemma":0.00004900632,"threshold_uncertainty_score":0.1718864},"labels":[],"label_agreement":null},{"id":"W2020716914","doi":"10.1038/ismej.2007.7","title":"Microbial ecology and environmental biotechnology","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Microbial ecology; Environmental biotechnology; Ecology; Geomicrobiology; Biotechnology; Microbial genetics; Bacteria; Genetics","score_opus":0.0035805621474564336,"score_gpt":0.1781198455235457,"score_spread":0.17453928337608926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020716914","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99632657,0.00005936878,0.00034267883,0.002271506,0.00024679524,0.000060725542,0.0000021470817,0.0000086457585,0.0006815914],"genre_scores_gemma":[0.9982035,0.00028531143,0.0004633204,0.0005857929,0.00016467896,2.0646208e-7,0.0000015096566,0.0000052288183,0.00029042727],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99942,0.00002813836,0.00014698737,0.00009808379,0.000086062675,0.0002207137],"domain_scores_gemma":[0.99975675,0.000028370026,0.00007892813,0.000078872145,8.350457e-7,0.000056224257],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00057619164,0.00006878978,0.00006341975,0.000024395722,0.00022803294,0.000019394425,0.00015315977,0.000091904796,0.0015924688],"category_scores_gemma":[0.000007807889,0.000043644686,0.000025974017,0.000047587844,0.00030270687,0.000056678295,0.00013147267,0.00023394274,0.00021512635],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015300342,0.000026871669,0.013988376,5.585507e-7,0.0000051829834,0.0000110342635,0.00016812983,0.000010648532,0.967562,0.000020686128,0.003911501,0.01427972],"study_design_scores_gemma":[0.0011147055,0.0003672003,0.48369825,0.0000053460913,0.00004674851,0.0036930246,0.0006301908,0.00013921357,0.27419832,0.0019361485,0.2338239,0.00034696484],"about_ca_topic_score_codex":0.000018741974,"about_ca_topic_score_gemma":0.00011687365,"teacher_disagreement_score":0.69336367,"about_ca_system_score_codex":0.000086388296,"about_ca_system_score_gemma":0.0000032427063,"threshold_uncertainty_score":0.9993202},"labels":[],"label_agreement":null},{"id":"W2023652460","doi":"10.1038/ismej.2015.48","title":"Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":229,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Joint Genome Institute; U.S. Department of Energy; National Science Foundation","keywords":"Biology; Metagenomics; Gammaproteobacteria; Human virome; Lytic cycle; Lysogenic cycle; Alphaproteobacteria; Genomics; Comparative genomics; Genome; Host (biology); Marine bacteriophage; Thaumarchaeota; Archaea; Virus; Genetics; Bacteriophage; Gene; Bacteria","score_opus":0.02720485173873516,"score_gpt":0.2527427199252343,"score_spread":0.22553786818649912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023652460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99460006,0.000010048681,0.00031856773,0.000631277,0.00028670655,0.0000622818,0.00002424607,0.000006402375,0.004060438],"genre_scores_gemma":[0.99764174,0.0000129129085,0.001053013,0.00017705219,0.000037131973,8.2881377e-7,0.000010493666,0.000010047662,0.0010567843],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991203,0.000101681704,0.00034921346,0.00011729919,0.00012959666,0.00018194287],"domain_scores_gemma":[0.99935,0.00006841822,0.00025015383,0.00020647103,0.00002131684,0.00010361477],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003642488,0.00010567223,0.00019758468,0.000113089955,0.000087850734,0.000066492954,0.00025616618,0.000027161195,0.005192034],"category_scores_gemma":[0.000017170092,0.000078141755,0.00014048022,0.0004750565,0.00008652986,0.00022296997,0.00012117701,0.0003151446,0.00012965458],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061519226,0.00022236048,0.010563214,0.0000010597973,0.000060680184,0.0000056214576,0.0006114903,0.021860164,0.96532184,6.629969e-7,0.00072171935,0.00056966644],"study_design_scores_gemma":[0.0013990368,0.0002558624,0.657661,0.000034412315,0.0007716564,0.00016804184,0.001021718,0.010801906,0.25716114,0.000053354088,0.070282,0.00038984686],"about_ca_topic_score_codex":0.001989484,"about_ca_topic_score_gemma":0.005609201,"teacher_disagreement_score":0.7081607,"about_ca_system_score_codex":0.00041902007,"about_ca_system_score_gemma":0.000031193067,"threshold_uncertainty_score":0.99571735},"labels":[],"label_agreement":null},{"id":"W2024994392","doi":"10.1038/ismej.2015.13","title":"An active atmospheric methane sink in high Arctic mineral cryosols","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Laurentian University; McGill University","funders":"Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; McGill University; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Permafrost; Sink (geography); Atmospheric methane; Arctic; Methane; Atmospheric sciences; Northern Hemisphere; Carbon sink; Latitude; Context (archaeology); Environmental chemistry; The arctic; Environmental science; Biology; Climate change; Ecology; Oceanography; Chemistry; Geology; Geography","score_opus":0.01683672222454537,"score_gpt":0.24583704789232286,"score_spread":0.22900032566777748,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024994392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99481994,0.0000990168,0.00016104529,0.0014712834,0.00035463352,0.0001075982,0.0000011070172,0.000010356575,0.0029750231],"genre_scores_gemma":[0.99570495,0.00004205878,0.0022925555,0.000362106,0.00020161203,0.000003552704,0.0000017556208,0.000015858946,0.0013755383],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.9985304,0.00035591968,0.00024270339,0.00015708894,0.0003748681,0.00033904507],"domain_scores_gemma":[0.99929404,0.000053165604,0.00014333634,0.00021772046,0.000013651825,0.00027811102],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009571055,0.00013619564,0.0001704833,0.000010060006,0.0000940263,0.000053408716,0.00038522892,0.00006040458,0.0022262272],"category_scores_gemma":[0.000041312767,0.000078500234,0.000047322217,0.0003045717,0.00012604673,0.00033146192,0.000078189965,0.0005833585,0.00032577428],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012709907,0.0015766561,0.08954505,0.000015336402,0.0003210267,0.0006018485,0.037845727,0.6723103,0.10665963,0.00042612056,0.009588045,0.0798393],"study_design_scores_gemma":[0.010806016,0.003457206,0.73773307,0.00016786145,0.00032874558,0.0031364711,0.007555204,0.05545867,0.0072506173,0.15568091,0.016495265,0.0019299643],"about_ca_topic_score_codex":0.0008584396,"about_ca_topic_score_gemma":0.00010696299,"teacher_disagreement_score":0.648188,"about_ca_system_score_codex":0.00027064182,"about_ca_system_score_gemma":0.00003081788,"threshold_uncertainty_score":0.9986859},"labels":[],"label_agreement":null},{"id":"W2025439954","doi":"10.1038/ismej.2010.47","title":"Dissimilatory reduction of nitrate in seawater by a <i>Methylophaga</i> strain containing two highly divergent <i>narG</i> sequences","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Montreal Biodome; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Armand-Frappier Foundation","keywords":"Denitrifying bacteria; Biology; Denitrification; Anoxic waters; Nitrate; Biofilm; 16S ribosomal RNA; Microbiology; Strain (injury); Population; Botany; Bacteria; Ecology; Genetics; Chemistry","score_opus":0.00951058125744745,"score_gpt":0.23018084816516757,"score_spread":0.22067026690772013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025439954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99774414,0.000082868726,0.000024327279,0.00088826445,0.00039387768,0.00011796518,0.000011904664,0.000010708842,0.00072592084],"genre_scores_gemma":[0.9982715,0.000034515495,0.0010839556,0.000081338454,0.00011632904,0.0000042603556,0.000004368966,0.000011820013,0.00039189914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870574,0.00014469057,0.0003226435,0.00016269274,0.00036023743,0.0003039653],"domain_scores_gemma":[0.9995142,0.000027227965,0.00018293473,0.00015399356,0.000009719459,0.00011192705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007918177,0.00015193224,0.00016644236,0.000037057194,0.00019681884,0.000046390334,0.00029809447,0.000050061728,0.0006796339],"category_scores_gemma":[0.0000057775655,0.00009125263,0.00008586238,0.00013603223,0.00027727554,0.00028517493,0.0000765204,0.00043618807,0.000036318295],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058333393,0.0000735524,0.014886688,0.0000015319321,0.000025761527,0.00002251282,0.0015084782,0.00032213758,0.98082125,0.0000144732985,0.0008577679,0.001407534],"study_design_scores_gemma":[0.0018281087,0.0002804815,0.011531275,0.000032161457,0.00007710293,0.0005971567,0.0014959046,0.00027519395,0.9776422,0.0042888396,0.0016501321,0.0003014532],"about_ca_topic_score_codex":0.00038388956,"about_ca_topic_score_gemma":0.00011248249,"teacher_disagreement_score":0.0042743664,"about_ca_system_score_codex":0.000074225274,"about_ca_system_score_gemma":0.000023497356,"threshold_uncertainty_score":0.7441515},"labels":[],"label_agreement":null},{"id":"W2026091133","doi":"10.1038/ismej.2007.77","title":"The diversity of the bacterial communities associated with the azooxanthellate hexacoral <i>Cirrhipathes lutkeni</i>","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"Florida Sea Grant, University of Florida; Link Foundation; American Cancer Society; National Science Foundation","keywords":"Biology; Diversity (politics); Ecology; Anthropology","score_opus":0.012552536964670551,"score_gpt":0.18345391298491043,"score_spread":0.1709013760202399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026091133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896527,0.00006117039,0.000021900552,0.004313667,0.0004325531,0.00015181425,0.0000072982857,0.000009987675,0.005348929],"genre_scores_gemma":[0.99738884,0.0000868458,0.0000040747145,0.00020010503,0.0001325925,9.633943e-7,3.3765906e-7,0.000007219249,0.0021790192],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986305,0.00034245028,0.00021053394,0.000060254544,0.00045265743,0.00030358913],"domain_scores_gemma":[0.9986982,0.00058062025,0.0003517632,0.00030407755,0.0000291675,0.00003622119],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.002201596,0.00012805517,0.00014456251,0.0000075867456,0.003944236,0.00007075565,0.0010678614,0.000029286624,0.00019723782],"category_scores_gemma":[0.0000379616,0.00004010324,0.000112055015,0.0001535693,0.00081784837,0.00009721798,0.0016137148,0.00041518925,0.00001650154],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008083752,0.00023479336,0.89258516,0.000008990402,0.000707325,0.000015157359,0.040903527,0.0003281103,0.0031458011,0.00048915035,0.04664486,0.014128775],"study_design_scores_gemma":[0.00052007235,0.00015594935,0.9592094,0.00004961095,0.00012603583,0.00008922833,0.011235355,0.0000661039,0.00052001013,0.0012982931,0.026575575,0.00015437898],"about_ca_topic_score_codex":0.0013581242,"about_ca_topic_score_gemma":0.014951184,"teacher_disagreement_score":0.06662425,"about_ca_system_score_codex":0.00009418766,"about_ca_system_score_gemma":0.000013137622,"threshold_uncertainty_score":0.9973525},"labels":[],"label_agreement":null},{"id":"W2032647410","doi":"10.1038/ismej.2013.204","title":"Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":187,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Ministerio de Ciencia e Innovación; Biodiversa+","keywords":"Biology; Picoplankton; Marine ecosystem; Phylogenetic tree; Polyphyly; Ecology; Protist; Evolutionary biology; Phylogenetics; Plankton; Pyrosequencing; Phylogenetic diversity; Zoology; Ecosystem; Genetics; Gene; Phytoplankton","score_opus":0.07037406065634456,"score_gpt":0.2454217347595569,"score_spread":0.17504767410321231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032647410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99374026,0.000044351953,0.000019260773,0.0050267526,0.00016169825,0.00021479568,0.0000015542712,0.0000032327284,0.00078809366],"genre_scores_gemma":[0.9989973,0.00009587605,0.00012523004,0.0006671316,0.00005314523,0.000009908595,0.0000018926161,0.0000035212834,0.000046000907],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99815947,0.0011911925,0.00025573745,0.000069177906,0.00015642491,0.00016799713],"domain_scores_gemma":[0.99924296,0.000262999,0.0001771984,0.00028292157,0.000014808878,0.000019140225],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0021377157,0.00008252469,0.00010220586,0.000014221678,0.00048612407,0.00003649039,0.0008011939,0.00003981357,0.0013732978],"category_scores_gemma":[0.000064012915,0.000035441746,0.00004652833,0.00014766863,0.00033370775,0.00024382894,0.00013199485,0.0007580012,0.000100791105],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022202692,0.0006552158,0.03635403,0.000019663363,0.00015771193,0.000007656349,0.22834665,0.017121417,0.6674733,0.003965031,0.034488715,0.011188554],"study_design_scores_gemma":[0.00039208803,0.00018793953,0.934523,0.000024689922,0.000031234376,0.00012488585,0.009640169,0.00029456866,0.0018049143,0.051722635,0.0011393107,0.00011456967],"about_ca_topic_score_codex":0.0006507817,"about_ca_topic_score_gemma":0.001145391,"teacher_disagreement_score":0.898169,"about_ca_system_score_codex":0.00004799261,"about_ca_system_score_gemma":0.000011993979,"threshold_uncertainty_score":0.99953955},"labels":[],"label_agreement":null},{"id":"W2033242505","doi":"10.1038/ismej.2007.111","title":"Thermodynamic constraints on methanogenic crude oil biodegradation","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Hydrocarbon exploration and reservoir analysis","field":"Engineering","cited_by":241,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Natural Environment Research Council; European Commission; Sight Research UK","keywords":"Methanogenesis; Anoxic waters; Methane; Environmental chemistry; Anaerobic oxidation of methane; Biodegradation; Chemistry; Biology; Organic chemistry","score_opus":0.014645262732666045,"score_gpt":0.24064005450087367,"score_spread":0.22599479176820764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033242505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90376353,0.00030233216,0.06770094,0.001089017,0.00048929726,0.00003202505,0.0000027849676,0.000118521966,0.02650154],"genre_scores_gemma":[0.9987884,0.00027902148,0.00016490609,0.00016069679,0.00021350748,0.0000010143218,0.0000032267972,0.000017686769,0.00037153452],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9991715,0.000053118583,0.00024266953,0.000064611464,0.0002619991,0.00020612786],"domain_scores_gemma":[0.9996066,0.00006515912,0.000052173742,0.00015581606,0.00003279054,0.00008746702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00079571066,0.00010554287,0.00011003099,0.00015298415,0.0001441136,0.00005720106,0.00019118474,0.00005462375,0.0003782249],"category_scores_gemma":[0.000021646265,0.00006505589,0.00011816047,0.00021871629,0.000055044387,0.00008696015,0.000008274501,0.00035080154,0.00013348243],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006610937,0.00010462283,0.000093620954,0.000024070192,0.0010673429,0.000077275894,0.0027174854,0.21166381,0.2679187,0.0013629576,0.002595632,0.51230836],"study_design_scores_gemma":[0.0023016236,0.00018780332,0.00468296,0.000160893,0.00041846308,0.0007567651,0.003006225,0.86886895,0.10350769,0.0039258776,0.011132519,0.0010502399],"about_ca_topic_score_codex":0.0000022738016,"about_ca_topic_score_gemma":0.000027833541,"teacher_disagreement_score":0.6572051,"about_ca_system_score_codex":0.000080611586,"about_ca_system_score_gemma":0.000017002974,"threshold_uncertainty_score":0.41412976},"labels":[],"label_agreement":null},{"id":"W2033724996","doi":"10.1038/ismej.2013.183","title":"Using environmental niche models to test the ‘everything is everywhere’ hypothesis for <i>Badhamia</i>","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Slime Mold and Myxomycetes Research","field":"Engineering","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Ministerio de Ciencia e Innovación","keywords":"Biology; Niche; Biological dispersal; Ecological niche; Ecology; Biogeography; Taxon; Environmental niche modelling; Null model; Phylogeography; Evolutionary biology; Phylogenetics; Population; Habitat; Demography","score_opus":0.0731393760875282,"score_gpt":0.24310821639036626,"score_spread":0.16996884030283804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033724996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899882,0.0006882344,0.004851427,0.0027050257,0.00025906943,0.0005850758,0.000024441995,0.000049039354,0.00084948144],"genre_scores_gemma":[0.99429977,0.0001505991,0.003178235,0.0010199473,0.0004991088,0.00003590458,3.6519717e-7,0.000058255748,0.00075784],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9987687,0.000043535543,0.00023376467,0.00011777924,0.00034422174,0.00049202563],"domain_scores_gemma":[0.9989471,0.0005544571,0.000038216156,0.00029026053,0.000024994006,0.00014496468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046687815,0.00016584042,0.00014661894,0.00005683013,0.0004721855,0.00026932606,0.0005297927,0.000058994847,0.00037726184],"category_scores_gemma":[0.000042673943,0.00009503595,0.00013835424,0.00009913938,0.000037327532,0.0003051054,0.00009252003,0.00043275353,0.00015259942],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031351476,0.0001255233,0.0019138895,0.00005011891,0.00043771343,0.000009879289,0.009369965,0.34053266,0.46518502,0.00005219145,0.1274032,0.05488849],"study_design_scores_gemma":[0.0007645222,0.00015176644,0.0030927036,0.000093083996,0.000103869024,0.0004928157,0.002078967,0.9340279,0.034743614,0.008005617,0.015946344,0.0004988138],"about_ca_topic_score_codex":0.00003431005,"about_ca_topic_score_gemma":0.0000022151403,"teacher_disagreement_score":0.59349525,"about_ca_system_score_codex":0.00016075694,"about_ca_system_score_gemma":0.00002355681,"threshold_uncertainty_score":0.41307527},"labels":[],"label_agreement":null},{"id":"W2034750820","doi":"10.1038/ismej.2015.22","title":"Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Virtual Materials Group (Canada); Ontario Genomics; University of Calgary; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Universitetet i Oslo; University of Alberta; Genome Canada","keywords":"Hydrocarbon; Metagenomics; Bioremediation; Methanogenesis; Enrichment culture; Biology; Environmental chemistry; Methane; Bacteria; Microbiology; Chemistry; Ecology; Gene; Biochemistry; Organic chemistry; Genetics","score_opus":0.039150073206679015,"score_gpt":0.25670632687831024,"score_spread":0.21755625367163123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034750820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977299,0.00045214666,0.00058166345,0.00021157644,0.0000614349,0.00010480025,0.000060121405,0.0000067693672,0.0007915613],"genre_scores_gemma":[0.99782616,0.00007616602,0.001815389,0.00011896127,0.00004576839,0.0000011567686,0.00002041877,0.000005038974,0.00009091944],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99866116,0.00012072661,0.00028962182,0.0001724811,0.0005673654,0.00018863162],"domain_scores_gemma":[0.9992716,0.000059038808,0.00032783483,0.0001820913,0.000006670366,0.00015279045],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004517401,0.00015607695,0.00033523398,0.00006264454,0.00012822953,0.00004159189,0.00034139236,0.000036898597,0.0018974715],"category_scores_gemma":[0.000007036241,0.00008055062,0.00014318751,0.0003378935,0.00022477965,0.00012874696,0.00009787325,0.00015996513,0.00006037236],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011739818,0.00016741517,0.3972394,6.2523355e-7,0.002725647,0.0000053966187,0.009728289,0.0061967466,0.5818177,0.000013738932,0.0014102348,0.000577403],"study_design_scores_gemma":[0.0010926126,0.000289042,0.85266024,0.000009543668,0.002798731,0.000025458541,0.0046497732,0.0020588709,0.13237193,0.0007462943,0.0029223869,0.00037508045],"about_ca_topic_score_codex":0.0002658288,"about_ca_topic_score_gemma":0.0008578218,"teacher_disagreement_score":0.45542088,"about_ca_system_score_codex":0.00018562602,"about_ca_system_score_gemma":0.00001619177,"threshold_uncertainty_score":0.9990149},"labels":[],"label_agreement":null},{"id":"W2034833171","doi":"10.1038/ismej.2007.53","title":"Pyrosequencing enumerates and contrasts soil microbial diversity","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1861,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"National Institute of General Medical Sciences; Ministério da Educação; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado do Rio Grande do Sul; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Pyrosequencing; Alphaproteobacteria; Phylum; UniFrac; Operational taxonomic unit; Betaproteobacteria; Ecology; Biodiversity; Bacteroidetes; Soil microbiology; Soil water; Archaea; Species evenness; 16S ribosomal RNA; Species diversity; Bacteria; Actinobacteria; Genetics; Gene","score_opus":0.009145942853921667,"score_gpt":0.20714880550709946,"score_spread":0.1980028626531778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034833171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976048,0.000039945357,0.00015779007,0.0005720393,0.00017467172,0.000036560632,0.0000015788756,0.0000068149284,0.0014057873],"genre_scores_gemma":[0.99858236,0.000036421505,0.000087303706,0.0010379412,0.00009097004,8.149881e-8,8.6995806e-7,0.0000029434736,0.00016111546],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994224,0.00013187228,0.00010771216,0.00006477143,0.00005396445,0.00021931683],"domain_scores_gemma":[0.999638,0.00013944585,0.00006885249,0.00008577297,0.000004588541,0.00006329289],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009740521,0.00006564562,0.000084452055,0.00001309017,0.0013720866,0.000020575539,0.00024378789,0.000054201875,0.0016533597],"category_scores_gemma":[0.000019769399,0.000045459416,0.000028657363,0.000045756213,0.0003437856,0.00009704793,0.00047853802,0.0004244103,0.000072326024],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013883483,0.00005595742,0.072993495,0.000002348264,0.000040573745,0.000035535744,0.0055101085,0.0002967842,0.9011941,0.0001425464,0.013515578,0.0060741287],"study_design_scores_gemma":[0.0010456201,0.00021743694,0.94682,0.000013539815,0.000050820607,0.0015298116,0.0007293185,0.000068337096,0.025790384,0.014570623,0.008887078,0.000277032],"about_ca_topic_score_codex":0.0003457331,"about_ca_topic_score_gemma":0.0019741652,"teacher_disagreement_score":0.8754037,"about_ca_system_score_codex":0.000057275265,"about_ca_system_score_gemma":0.0000063475304,"threshold_uncertainty_score":0.999928},"labels":[],"label_agreement":null},{"id":"W2035139729","doi":"10.1038/ismej.2010.193","title":"Coral-mucus-associated <i>Vibrio</i> integrons in the Great Barrier Reef: genomic hotspots for environmental adaptation","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Dalhousie University","funders":"","keywords":"Biology; Integron; Vibrio; Pocillopora damicornis; rpoB; Vibrio alginolyticus; Microbiology; Vibrio parahaemolyticus; Genetics; Coral; Gene; Antibiotic resistance; Ecology; Bacteria; 16S ribosomal RNA","score_opus":0.0347788599059846,"score_gpt":0.20368902179973122,"score_spread":0.16891016189374664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035139729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927654,0.000093197705,0.00020324094,0.0008009901,0.000265931,0.0003751176,0.000019974408,0.000010782582,0.005465355],"genre_scores_gemma":[0.99705166,0.00010695177,0.00014804701,0.00040624136,0.00009540045,0.00003558507,0.0000034721509,0.00001333484,0.002139295],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99886674,0.00016572097,0.00028573885,0.00014704892,0.00023303223,0.00030173094],"domain_scores_gemma":[0.99949074,0.00009846075,0.00018150297,0.00017037804,0.0000044391163,0.00005446104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008664571,0.00014554724,0.00015313679,0.000026271644,0.00047296402,0.00003788934,0.0004203486,0.000043633278,0.00086393557],"category_scores_gemma":[0.000037571055,0.000077884404,0.000109226174,0.00009063928,0.00012672828,0.00018710074,0.00017456173,0.0002749129,0.00014629956],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00072773773,0.00083690905,0.697483,0.000016198079,0.00031819005,0.00007866327,0.087135054,0.00037948418,0.029004807,0.0003725072,0.06823993,0.11540749],"study_design_scores_gemma":[0.0007026389,0.00023369232,0.98115957,0.000016691736,0.000055184835,0.00012501302,0.004391391,0.0010915276,0.000095032316,0.0027567958,0.009199357,0.00017313521],"about_ca_topic_score_codex":0.00045607582,"about_ca_topic_score_gemma":0.0017678835,"teacher_disagreement_score":0.2836765,"about_ca_system_score_codex":0.00027294035,"about_ca_system_score_gemma":0.000010781692,"threshold_uncertainty_score":0.9459489},"labels":[],"label_agreement":null},{"id":"W2035182371","doi":"10.1038/ismej.2014.157","title":"Which is more important for classifying microbial communities: who’s there or what they can do?","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Dalhousie University; Howard Hughes Medical Institute; National Institutes of Health; National Science Foundation","keywords":"Biology; Microbial ecology; Computational biology; Ecology; Bacteria; Genetics","score_opus":0.025305320934512144,"score_gpt":0.29517842813997175,"score_spread":0.2698731072054596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035182371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98464906,0.0010328363,0.00053178007,0.012778343,0.00047036624,0.0002471176,0.000051899126,0.000008163069,0.00023041571],"genre_scores_gemma":[0.98853093,0.0035459544,0.00036898692,0.0053651137,0.0010433143,0.000008112417,0.00003594202,0.000040810457,0.0010608056],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988529,0.00016001327,0.0003418509,0.00014078947,0.00010035785,0.0004040887],"domain_scores_gemma":[0.998974,0.000047758225,0.00024494325,0.00043914103,0.00018203768,0.00011210212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008173805,0.00018507766,0.00021034594,0.0000316532,0.0006872512,0.00027843233,0.00050434127,0.00016276097,0.00009765948],"category_scores_gemma":[0.00003437071,0.00010779574,0.00013543924,0.0000450532,0.00007475243,0.000010577475,0.00010531213,0.000373236,0.0000034025813],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074865244,0.00013477555,0.0027984465,0.00015427613,0.00036195942,0.0000033294511,0.01827478,0.000053536827,0.8747649,0.00027004673,0.094286315,0.008148986],"study_design_scores_gemma":[0.0062414003,0.0025618651,0.006829838,0.0009924665,0.00028884923,0.0028348812,0.060175434,0.0007306321,0.08542912,0.0023074364,0.83030176,0.0013063008],"about_ca_topic_score_codex":0.00009555508,"about_ca_topic_score_gemma":0.002367567,"teacher_disagreement_score":0.7893358,"about_ca_system_score_codex":0.00003203742,"about_ca_system_score_gemma":0.00028642212,"threshold_uncertainty_score":0.528585},"labels":[],"label_agreement":null},{"id":"W2040424396","doi":"10.1038/ismej.2013.8","title":"Bacterial growth at −15 °C; molecular insights from the permafrost bacterium <i>Planococcus halocryophilus</i> Or1","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":323,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences; McGill University","funders":"","keywords":"Biology; Permafrost; Osmolyte; Transcriptome; Bacteria; Osmoprotectant; Biochemistry; Gene; Genetics; Ecology; Gene expression; Amino acid; Proline","score_opus":0.005934522752003356,"score_gpt":0.1916348854068341,"score_spread":0.18570036265483075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040424396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9851598,0.00012648365,0.000045253993,0.00966846,0.0005509392,0.0002567368,0.000054592383,0.000015595255,0.004122124],"genre_scores_gemma":[0.99577713,0.00009886935,0.00007159628,0.0026272987,0.0006605692,0.000017283344,0.000030451582,0.000022320773,0.00069449283],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980616,0.00042006266,0.00025794827,0.00021284474,0.00046273452,0.0005848069],"domain_scores_gemma":[0.9990113,0.00017100699,0.00012714129,0.00037512722,0.000020572063,0.00029488804],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00028694523,0.00018377528,0.00017013593,0.000019834439,0.0008399734,0.00027547215,0.0010330996,0.00008491334,0.032581463],"category_scores_gemma":[0.00008296757,0.000091236914,0.00011385534,0.000116660136,0.00039675916,0.0003820183,0.00068956177,0.00057792314,0.007358708],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008273422,0.000055862696,0.016899738,0.0000011149943,0.00005923813,0.00007924684,0.00082369824,0.000023778593,0.8582295,0.000038105965,0.12306456,0.0006424301],"study_design_scores_gemma":[0.0012935224,0.00024137758,0.8216836,0.000014503989,0.000044270706,0.0006890977,0.00017306395,0.00024739304,0.026718827,0.010466305,0.1380535,0.00037455396],"about_ca_topic_score_codex":0.0012107178,"about_ca_topic_score_gemma":0.00057301734,"teacher_disagreement_score":0.83151066,"about_ca_system_score_codex":0.00021472189,"about_ca_system_score_gemma":0.00003112642,"threshold_uncertainty_score":0.99341416},"labels":[],"label_agreement":null},{"id":"W2040938148","doi":"10.1038/ismej.2015.1","title":"Winter diversity and expression of proteorhodopsin genes in a polar ocean","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Montréal; Université du Québec à Montréal","funders":"Groupe de recherche interuniversitaire en limnologie; Natural Sciences and Engineering Research Council of Canada; Ministerio de Ciencia e Innovación; Fonds de recherche du Québec – Nature et technologies; ArcticNet","keywords":"Biology; Gammaproteobacteria; Alphaproteobacteria; Ecology; Gene; Genetics","score_opus":0.11589029706143517,"score_gpt":0.32155268394162695,"score_spread":0.20566238688019178,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040938148","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99908596,0.00014010527,0.000059534883,0.00024544605,0.00007641561,0.00009979221,0.0000030393674,0.0000027505516,0.00028697474],"genre_scores_gemma":[0.9995977,0.00009069964,0.00010046686,0.000051703893,0.000048449034,3.354574e-7,4.1915033e-8,0.0000039702395,0.00010662454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990806,0.0002518407,0.00010703355,0.00008250876,0.00033654328,0.00014149443],"domain_scores_gemma":[0.9996523,0.000058259764,0.000053486972,0.00009339042,0.00003875604,0.00010377053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006408048,0.000049100126,0.00007639386,0.00006994026,0.0001997718,0.000026186468,0.00028409134,0.000024025601,0.000028611852],"category_scores_gemma":[0.00020284041,0.000029232286,0.000022129223,0.00009283242,0.00012075851,0.00009404806,0.00056404265,0.00022091842,0.0000026501186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001224283,0.000037182905,0.06592945,0.0000041068165,0.0000010208797,0.0000112276,0.003797268,0.00001995546,0.92911166,0.000007625215,0.00041326578,0.0005448033],"study_design_scores_gemma":[0.00050360954,0.00010812513,0.016932331,0.000029035471,0.0000020777943,0.00009187518,0.00028332157,0.0001612862,0.98023283,0.0012613373,0.0003489163,0.00004524146],"about_ca_topic_score_codex":0.000021157248,"about_ca_topic_score_gemma":0.0000032506075,"teacher_disagreement_score":0.05112118,"about_ca_system_score_codex":0.000024556814,"about_ca_system_score_gemma":0.000036632613,"threshold_uncertainty_score":0.15365034},"labels":[],"label_agreement":null},{"id":"W2041341409","doi":"10.1038/ismej.2009.37","title":"16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":586,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; University of Chicago; National Center for Complementary and Integrative Health; National Institute of Diabetes and Digestive and Kidney Diseases; National Human Genome Research Institute; National Institutes of Health","keywords":"Biology; Necrotizing enterocolitis; Feces; Microbiology; Operational taxonomic unit; Microbiome; Antibiotics; Gut flora; Neonatal intensive care unit; Terminal restriction fragment length polymorphism; 16S ribosomal RNA; Bacteria; Immunology; Restriction fragment length polymorphism; Internal medicine; Genetics; Gene; Polymerase chain reaction","score_opus":0.013458668265995495,"score_gpt":0.2775694257688906,"score_spread":0.2641107575028951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041341409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99459785,0.00029931037,0.0008662419,0.00370477,0.00010845764,0.0001961222,0.00006342721,0.00001804224,0.00014580021],"genre_scores_gemma":[0.9943232,0.000048129143,0.0028026695,0.0026106522,0.00017397874,0.0000013085436,0.000014172884,0.000012135867,0.00001373336],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987562,0.00017180257,0.00039192106,0.00015635026,0.00023719588,0.00028657037],"domain_scores_gemma":[0.9991356,0.0000618849,0.0003481576,0.00021691926,0.00009830144,0.00013909525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032158417,0.00014714283,0.00039550554,0.00025635923,0.00030995067,0.00011568907,0.00014385735,0.00006901323,0.00010002844],"category_scores_gemma":[0.000012238039,0.00009721002,0.00012737873,0.00027595696,0.00008869219,0.00011447721,0.000012240732,0.0003561971,0.0000016518305],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008924969,0.0006062262,0.6519519,0.0000921725,0.00204759,0.000076083605,0.0112208165,0.00076050824,0.2978998,0.00008507315,0.0025645923,0.02377025],"study_design_scores_gemma":[0.003795569,0.00070112513,0.9598414,0.00041179292,0.0012496673,0.00032664533,0.00018590459,0.0041602636,0.028192751,0.00027953525,0.00062016357,0.00023522586],"about_ca_topic_score_codex":0.00014949875,"about_ca_topic_score_gemma":0.00011126874,"teacher_disagreement_score":0.30788943,"about_ca_system_score_codex":0.00006286693,"about_ca_system_score_gemma":0.000042680917,"threshold_uncertainty_score":0.39641094},"labels":[],"label_agreement":null},{"id":"W2043457856","doi":"10.1038/ismej.2015.57","title":"Forest harvesting reduces the soil metagenomic potential for biomass decomposition","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Forests; University of British Columbia","funders":"Genome British Columbia; Tula Foundation; Genome Canada","keywords":"Biology; Metagenomics; Biomass (ecology); Soil carbon; Nutrient cycle; Microbial population biology; Ecosystem; Ecology; Productivity; Environmental science; Agronomy; Agroforestry; Soil water","score_opus":0.03840756619165776,"score_gpt":0.257876856716858,"score_spread":0.21946929052520026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043457856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909208,0.0002600319,0.00010601691,0.0078918785,0.00046668382,0.00011776151,0.0000090405565,0.000020046713,0.00020775152],"genre_scores_gemma":[0.9980749,0.000013799037,0.00017917121,0.00024934343,0.0012733256,0.000006616413,0.000009728512,0.0000012415934,0.00019189941],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99923146,0.00011970373,0.00017361606,0.00008746096,0.00017986796,0.0002079039],"domain_scores_gemma":[0.99947685,0.00014626466,0.00014721765,0.000037997495,0.00009832649,0.00009335108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009908567,0.00008650739,0.000089828485,0.0000072610023,0.0005946697,0.00025092147,0.00034558738,0.00003964432,0.000015218158],"category_scores_gemma":[0.000060800307,0.000021385795,0.00014056811,0.00009872712,0.0000641221,0.00010256376,0.000044382756,0.00013933629,0.000009350109],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025649866,0.00009233754,0.0014492964,0.0000035582202,0.00016398802,0.000011815786,0.000560493,0.0022638608,0.91457087,0.0006472225,0.0056853,0.07429475],"study_design_scores_gemma":[0.0037711563,0.0035374046,0.2392077,0.00012840459,0.001299116,0.007856121,0.016068827,0.36749005,0.16075413,0.16701089,0.030983943,0.0018922448],"about_ca_topic_score_codex":0.00016805048,"about_ca_topic_score_gemma":0.0004349692,"teacher_disagreement_score":0.7538167,"about_ca_system_score_codex":0.000033474273,"about_ca_system_score_gemma":0.000020588592,"threshold_uncertainty_score":0.45737788},"labels":[],"label_agreement":null},{"id":"W2045000440","doi":"10.1038/ismej.2011.169","title":"Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":336,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Robert Wood Johnson Foundation; Burroughs Wellcome Fund; National Institutes of Health; National Science Foundation","keywords":"Human virome; Biology; Saliva; Metagenomics; Microbiome; Virus; Population; Genetics; Microbiology; Virology; Gene","score_opus":0.07709605217878704,"score_gpt":0.2834974270271258,"score_spread":0.2064013748483388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045000440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839246,0.000058662165,0.00017347246,0.00019999164,0.00014957612,0.00009971866,0.000007795004,0.0000044990816,0.00091379293],"genre_scores_gemma":[0.99868923,0.0000809376,0.0004577638,0.000088669076,0.00003622103,0.0000015537202,0.0000011629257,0.000007566775,0.00063689623],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99883515,0.0002125678,0.00046980465,0.00011478461,0.00022722148,0.00014050321],"domain_scores_gemma":[0.9989247,0.000046597303,0.00058935647,0.0003859926,0.000019787623,0.00003358934],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00040889598,0.00009457688,0.00020953016,0.00004676127,0.00027313284,0.000021155953,0.0004991483,0.00003917211,0.008340716],"category_scores_gemma":[0.000032566208,0.000053081592,0.0002717122,0.0004674445,0.0001624066,0.00044242048,0.0001935718,0.00022621707,0.000015482283],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048109814,0.00008093717,0.036909696,0.0000080858845,0.00025311898,0.0000030067379,0.004804928,0.00090457866,0.9561325,0.000047316433,0.00039214728,0.0004156125],"study_design_scores_gemma":[0.00007579872,0.00005714803,0.99013245,0.000101623256,0.00048516016,0.000039563572,0.00014004261,0.00004228168,0.008552881,0.0002807381,0.000034789904,0.000057531674],"about_ca_topic_score_codex":0.0044163293,"about_ca_topic_score_gemma":0.0008535861,"teacher_disagreement_score":0.95322275,"about_ca_system_score_codex":0.00009665664,"about_ca_system_score_gemma":0.000007689141,"threshold_uncertainty_score":0.9925658},"labels":[],"label_agreement":null},{"id":"W2045723786","doi":"10.1038/ismej.2011.93","title":"Phylodynamics and movement of Phycodnaviruses among aquatic environments","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Instituto Nacional de Pesquisas da Amazônia; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Ecology; Phylogeography; Bacterioplankton; Viral phylodynamics; Population; Phylogenetic tree; Phytoplankton; Evolutionary biology; Nutrient; Gene; Genetics","score_opus":0.01527448420791401,"score_gpt":0.2025907936198421,"score_spread":0.18731630941192812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045723786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99642307,0.000022468836,0.00061665877,0.00005786075,0.000104335944,0.000058993704,0.0000022045729,0.0000023753357,0.0027120193],"genre_scores_gemma":[0.9984484,0.00013551817,0.00050160766,0.0001612684,0.000021584116,0.0000013557645,2.509861e-7,0.000006551079,0.0007234879],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995219,0.000032998694,0.00016474108,0.00006753515,0.00009892027,0.000113884926],"domain_scores_gemma":[0.9996854,0.000013611394,0.00014198737,0.00010869051,8.1434285e-7,0.000049471764],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013901548,0.00006732818,0.0000724576,0.000012697405,0.00012122197,0.000015901156,0.00014028816,0.000019154526,0.001791281],"category_scores_gemma":[0.0000043961627,0.00004356425,0.000038365943,0.000031014122,0.00020103062,0.00016778948,0.000099329925,0.00013408784,0.000055589087],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027227048,0.00024982129,0.05584675,0.00000310732,0.000074258125,0.000006649562,0.0051259254,0.00006599261,0.92056876,0.00004148245,0.00052585464,0.017464187],"study_design_scores_gemma":[0.00019382816,0.000089129244,0.978278,0.00001789239,0.000041506548,0.0000447891,0.00034282467,0.00033302256,0.01796763,0.0012164114,0.0013914037,0.00008359551],"about_ca_topic_score_codex":0.000453383,"about_ca_topic_score_gemma":0.0001017184,"teacher_disagreement_score":0.92243123,"about_ca_system_score_codex":0.000041362084,"about_ca_system_score_gemma":0.0000021702847,"threshold_uncertainty_score":0.9991212},"labels":[],"label_agreement":null},{"id":"W2046953590","doi":"10.1038/ismej.2015.54","title":"Non-symbiotic <i>Bradyrhizobium</i> ecotypes dominate North American forest soils","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":211,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Praxis Spinal Cord Institute; University of British Columbia","funders":"Genome British Columbia; Tula Foundation; Western Canada Research Grid; Genome Canada","keywords":"Biology; Bradyrhizobium; Ecology; Ecotype; Ecosystem; Forest ecology; Nitrogen fixation; Nitrogen cycle; Context (archaeology); Botany; Bacteria","score_opus":0.01665225770876308,"score_gpt":0.2119471841532316,"score_spread":0.19529492644446853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046953590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912934,0.000101135396,0.0000020922027,0.0071426122,0.00035513547,0.00011331714,0.000010419449,0.00004379916,0.00093809306],"genre_scores_gemma":[0.9974827,0.000017180673,0.00010760351,0.0009374008,0.0010817077,0.000003602613,0.0000063727866,0.000002717145,0.00036072548],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985586,0.0001287724,0.0002781873,0.00018296223,0.00038816285,0.00046332946],"domain_scores_gemma":[0.9990346,0.00014706759,0.00026878406,0.00009968493,0.00014239826,0.00030746407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059802044,0.00018503141,0.00023719475,0.000016296824,0.00037808565,0.00020992111,0.0006999428,0.000041514184,0.00007215075],"category_scores_gemma":[0.000070436,0.00005459931,0.00015599407,0.00045037508,0.00018428829,0.0001909725,0.00010849111,0.00039834224,0.00032336352],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003947861,0.0005198506,0.6637186,0.00001177887,0.00036610593,0.0001464967,0.0023657167,0.00005091421,0.12758611,0.0001856375,0.09751881,0.10713521],"study_design_scores_gemma":[0.0007462019,0.0013205541,0.9687834,0.00003617804,0.00014058706,0.00080116966,0.0013382961,0.00015025823,0.017068991,0.0024271368,0.006550996,0.0006362609],"about_ca_topic_score_codex":0.0004008805,"about_ca_topic_score_gemma":0.0025964796,"teacher_disagreement_score":0.3050648,"about_ca_system_score_codex":0.00007080511,"about_ca_system_score_gemma":0.000036427187,"threshold_uncertainty_score":0.41562918},"labels":[],"label_agreement":null},{"id":"W2047625810","doi":"10.1038/ismej.2008.115","title":"Gene transfer agent (GTA) genes reveal diverse and dynamic <i>Roseobacter</i> and <i>Rhodobacter</i> populations in the Chesapeake Bay","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Xiamen University; National Science Foundation","keywords":"Roseobacter; Biology; Rhodobacter; Horizontal gene transfer; Archaea; Genetics; Genetic diversity; Alphaproteobacteria; 16S ribosomal RNA; Phylogenetics; Gene; Population; Clade","score_opus":0.03967222142156756,"score_gpt":0.24812256668427815,"score_spread":0.20845034526271058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047625810","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99721515,0.00016334649,0.000050644412,0.0020413338,0.000108873995,0.00012745982,0.000010065598,0.0000053625395,0.0002777849],"genre_scores_gemma":[0.9969561,0.001085213,0.00016432906,0.001592875,0.000045258057,0.0000029156267,0.00000725539,0.0000063844122,0.00013967756],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988342,0.0005428698,0.00019295658,0.000115679315,0.00009387221,0.00022045009],"domain_scores_gemma":[0.99960107,0.000103493716,0.00004447943,0.0001900348,0.0000046551995,0.000056261204],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005592443,0.00011494032,0.00013429207,0.000022508742,0.0009421525,0.000024938403,0.00031172036,0.00006635137,0.0004592081],"category_scores_gemma":[0.000008573888,0.00006843601,0.000042281354,0.00009652795,0.00042898284,0.00013728505,0.00012892978,0.00048445247,0.000025710693],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023150687,0.00041508555,0.59141904,0.000013677428,0.000074780764,0.00014865835,0.03110894,0.0009998592,0.35554898,0.00012485257,0.00640927,0.013505345],"study_design_scores_gemma":[0.0003917263,0.000073473086,0.99290085,0.0000047508993,0.000024124849,0.001506434,0.0002558504,0.00007073536,0.0001485507,0.00090266106,0.0036183922,0.00010246659],"about_ca_topic_score_codex":0.00016928327,"about_ca_topic_score_gemma":0.0033718217,"teacher_disagreement_score":0.40148178,"about_ca_system_score_codex":0.000039776613,"about_ca_system_score_gemma":0.000009508918,"threshold_uncertainty_score":0.72463703},"labels":[],"label_agreement":null},{"id":"W2048709368","doi":"10.1038/ismej.2013.234","title":"Metaproteomic analysis of a winter to spring succession in coastal northwest Atlantic Ocean microbial plankton","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bedford Institute of Oceanography; Fisheries and Oceans Canada; Concordia University","funders":"","keywords":"Biology; Ecological succession; Spring (device); Plankton; Oceanography; Ecology; Geomicrobiology; Microbial ecology; Bacteria; Environmental biotechnology","score_opus":0.007512923135647708,"score_gpt":0.22414423855985685,"score_spread":0.21663131542420913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048709368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988288,0.0000022444626,0.00033204776,0.00045456985,0.000087821245,0.000071764865,0.000004729267,0.0000035470773,0.00021442656],"genre_scores_gemma":[0.99932194,0.0000044484577,0.00020864957,0.00037732025,0.000036828962,4.6193813e-7,0.0000064748497,0.0000049836435,0.000038870367],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99893415,0.0004080835,0.00027124837,0.00010231626,0.00008172101,0.0002025029],"domain_scores_gemma":[0.9994902,0.00010246081,0.00014218474,0.00020402385,0.000006661955,0.00005445087],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000831168,0.00008985184,0.00025452813,0.00013251464,0.00016592866,0.000014703495,0.00045834156,0.000050997067,0.0018559227],"category_scores_gemma":[0.000029044117,0.00006032116,0.00010668909,0.00034411225,0.00011529624,0.000071920236,0.00028926283,0.0003813736,0.00006106649],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012786522,0.00006725837,0.62497324,0.0000024460671,0.00010147388,0.0000027360684,0.0010254498,0.013609029,0.35918587,0.000008220599,0.0006681443,0.00022825575],"study_design_scores_gemma":[0.0003061507,0.00012946753,0.9926758,0.00001720339,0.00015825272,0.000028066692,0.0000578169,0.0010833675,0.004258348,0.00014259506,0.0010427325,0.00010020061],"about_ca_topic_score_codex":0.0046397597,"about_ca_topic_score_gemma":0.0923188,"teacher_disagreement_score":0.36770254,"about_ca_system_score_codex":0.000052635616,"about_ca_system_score_gemma":0.000009697922,"threshold_uncertainty_score":0.9990565},"labels":[],"label_agreement":null},{"id":"W2048966735","doi":"10.1038/ismej.2013.195","title":"Ectomycorrhizal fungi contribute to soil organic matter cycling in sub-boreal forests","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":191,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Génome Québec; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Humus; Hypha; Taiga; Sink (geography); Ectomycorrhiza; Organic matter; Soil water; Botany; Soil organic matter; Nutrient cycle; Decomposer; Biology; Ecology; Boreal; Environmental science; Environmental chemistry; Ecosystem; Mycorrhiza; Chemistry; Symbiosis; Bacteria; Geography","score_opus":0.007820233698497867,"score_gpt":0.20471293624752307,"score_spread":0.1968927025490252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048966735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98936707,0.00020852743,0.000045169625,0.008153574,0.00046674686,0.0002000129,0.00012602273,0.000019611727,0.0014132615],"genre_scores_gemma":[0.99682957,0.00026198995,0.000018130571,0.0015350344,0.00079789705,0.000011853429,0.00007366212,0.0000016628686,0.00047017142],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988817,0.000108128115,0.000290811,0.00013584978,0.0001861225,0.00039737351],"domain_scores_gemma":[0.99857414,0.0010241102,0.000093457216,0.00005327708,0.000079982834,0.00017504072],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00031593879,0.00013011946,0.00015915689,0.000027077442,0.00027065357,0.00024517727,0.00034148595,0.00006575684,0.021787979],"category_scores_gemma":[0.00009675239,0.00004100508,0.00008737161,0.0002690899,0.000004645031,0.00022022349,0.00006312976,0.00041882845,0.008279036],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006512245,0.00006565369,0.5499766,0.0000024518697,0.00002328647,0.000025375259,0.0002432425,0.00012666197,0.24702662,0.000054991422,0.19290382,0.0094861565],"study_design_scores_gemma":[0.0001272329,0.00017914982,0.9770112,0.00011309614,0.000018584615,0.0009786534,0.0002835345,0.00062480156,0.004198294,0.0032846872,0.012910116,0.0002706412],"about_ca_topic_score_codex":0.0018492109,"about_ca_topic_score_gemma":0.0025547529,"teacher_disagreement_score":0.4270346,"about_ca_system_score_codex":0.000043064236,"about_ca_system_score_gemma":0.000011620505,"threshold_uncertainty_score":0.99249315},"labels":[],"label_agreement":null},{"id":"W2050209782","doi":"10.1038/ismej.2008.55","title":"Distantly sampled soils carry few species in common","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":187,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"","keywords":"Biology; Phylum; Soil water; Taxonomic rank; Phylogenetic tree; Jaccard index; Community structure; Soil microbiology; Ecology; Subsoil; Botany; Taxon; Bacteria; Statistics; Mathematics; Paleontology; Genetics","score_opus":0.026049855445468808,"score_gpt":0.2408245422584561,"score_spread":0.21477468681298728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050209782","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940785,0.002835018,0.00008057826,0.00070708734,0.00019268929,0.0000594529,0.000011088133,0.0000011887954,0.0020343927],"genre_scores_gemma":[0.9953515,0.002962118,0.0001334212,0.00024984052,0.00046413465,0.0000026140087,0.0000035686755,0.000010974122,0.00082182727],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99930406,0.000066656976,0.00020819546,0.00010686494,0.0001029927,0.00021121324],"domain_scores_gemma":[0.9996311,0.000018717956,0.00007792594,0.00018972417,0.00003542578,0.000047108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020967456,0.000104719904,0.00014349772,0.00002407161,0.000253702,0.00002011747,0.00022450268,0.000047062178,0.000021017146],"category_scores_gemma":[0.000020366662,0.00007017489,0.00008250497,0.000051313968,0.0001219088,6.203124e-7,0.000093659815,0.00015472545,0.0000048629054],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018475563,0.00011537623,0.13801825,0.000009155119,0.00020432915,0.000070175745,0.001986052,0.0006993132,0.8419393,0.0003241406,0.014240688,0.0022084662],"study_design_scores_gemma":[0.0012035425,0.00030320155,0.8594842,0.000019241497,0.000028621958,0.0010540613,0.00078850985,0.00003134139,0.034970544,0.0023043957,0.09948071,0.00033165803],"about_ca_topic_score_codex":0.000034445406,"about_ca_topic_score_gemma":0.00020034559,"teacher_disagreement_score":0.80696875,"about_ca_system_score_codex":0.000015578442,"about_ca_system_score_gemma":0.000055688743,"threshold_uncertainty_score":0.28616488},"labels":[],"label_agreement":null},{"id":"W2053274255","doi":"10.1038/ismej.2012.84","title":"Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Forest Ecology and Biodiversity Studies","field":"Agricultural and Biological Sciences","cited_by":321,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Tula Foundation; McGill University; Canadian Institute for Advanced Research","keywords":"Biology; Ecology; Biodiversity; Ecosystem; Forest ecology; Soil ecology; Logging; Soil biodiversity; Soil organic matter; Agroforestry; Soil water","score_opus":0.0385615092986427,"score_gpt":0.2269712719845753,"score_spread":0.18840976268593262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053274255","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99816626,0.00015590277,7.6444266e-8,0.0013789979,0.00005108811,0.000046901077,0.000013148217,0.0000035113767,0.00018410844],"genre_scores_gemma":[0.9997211,0.000039365503,0.0000043281566,0.0000845136,0.00008216116,4.2287627e-7,0.0000024301528,3.1393256e-7,0.000065340355],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994738,0.000118310934,0.00010334394,0.000035396228,0.00006709178,0.0002020312],"domain_scores_gemma":[0.999587,0.00022387668,0.00009053262,0.000021782254,0.00003261004,0.00004419746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039638666,0.00007167341,0.00011613306,0.0000100469915,0.0003720635,0.00002134518,0.00012451537,0.00003859698,0.000052274052],"category_scores_gemma":[0.000015216143,0.0000208178,0.00008763524,0.000047264395,0.00020601065,0.00006904567,0.00006786297,0.00019754017,0.0000070313104],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006155316,0.000073660936,0.9941673,0.0000015421261,0.000043106615,0.0000017157915,0.0018279643,0.0001282756,0.0019417083,0.000010944248,0.0005524303,0.0011897879],"study_design_scores_gemma":[0.00014273876,0.00045573432,0.9952821,0.000016988786,0.000014847554,0.000057308614,0.0037035034,0.000012643013,0.00006442194,0.000026910579,0.00016864513,0.00005416978],"about_ca_topic_score_codex":0.0011977827,"about_ca_topic_score_gemma":0.01689163,"teacher_disagreement_score":0.015693849,"about_ca_system_score_codex":0.00003190487,"about_ca_system_score_gemma":0.0000057541974,"threshold_uncertainty_score":0.9425927},"labels":[],"label_agreement":null},{"id":"W2053771262","doi":"10.1038/ismej.2012.7","title":"Effect of oxygen minimum zone formation on communities of marine protists","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"Lawrence Livermore National Laboratory; Los Alamos National Laboratory; Biological and Environmental Research; Division of Molecular and Cellular Biosciences; Natural Sciences and Engineering Research Council of Canada; Lawrence Berkeley National Laboratory; Canadian Institute for Advanced Research; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Anoxic waters; Biology; Fjord; Water column; Biogeochemical cycle; Ecology; Oceanography; Inlet; Oxygen minimum zone; Geology","score_opus":0.01166269300516022,"score_gpt":0.24255662133416353,"score_spread":0.23089392832900332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053771262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99522746,0.000010384402,0.000040079245,0.00014598912,0.000088014815,0.00011613889,0.00000198458,0.0000024032263,0.0043675313],"genre_scores_gemma":[0.99968463,0.000019979634,0.000059258386,0.0000819014,0.000032460437,0.0000021675044,0.000004469423,0.0000030385313,0.00011211952],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988391,0.0007904621,0.00016076752,0.000015111767,0.000071495015,0.00012306472],"domain_scores_gemma":[0.9993391,0.0002825735,0.00017930713,0.000168551,0.0000057186617,0.000024754605],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001140897,0.000055184762,0.00012268565,0.000018768895,0.00017332323,0.0000025452603,0.0002750229,0.000037230217,0.002821184],"category_scores_gemma":[0.000017435508,0.00003299828,0.00004017134,0.000042976128,0.00020156239,0.00012021695,0.00019280145,0.0002767875,0.000062832514],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002745426,0.0012346352,0.20792995,0.0002783714,0.00021368438,0.000001613029,0.043244284,0.002302627,0.6571759,0.0008519955,0.027368935,0.056652572],"study_design_scores_gemma":[0.0016182305,0.0045361943,0.80238914,0.00008456458,0.000088409426,0.00036332328,0.0008465699,0.00033507077,0.18251528,0.0018379848,0.0051767174,0.0002084827],"about_ca_topic_score_codex":0.00013713556,"about_ca_topic_score_gemma":0.00015904325,"teacher_disagreement_score":0.59445924,"about_ca_system_score_codex":0.000027417906,"about_ca_system_score_gemma":0.0000026029763,"threshold_uncertainty_score":0.9980904},"labels":[],"label_agreement":null},{"id":"W2054720302","doi":"10.1038/ismej.2011.39","title":"The genomic standards consortium: bringing standards to life for microbial ecology","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre for Ecology and Hydrology; U.S. National Library of Medicine; Argonne National Laboratory; Biotechnology and Biological Sciences Research Council; Jacobs University; National Institutes of Health; Institute of Genetics; University of Oxford; Natural Environment Research Council; European Bioinformatics Institute; Wellcome Trust","keywords":"Biology; Microbial ecology; Ecology; Biotechnology; Genetics; Bacteria","score_opus":0.020905903504887847,"score_gpt":0.2588165156360377,"score_spread":0.23791061213114983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054720302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99007356,0.000054955664,0.0016715009,0.0026445468,0.00085144286,0.00032314894,0.000084105064,0.0000151285185,0.0042815916],"genre_scores_gemma":[0.99576974,0.000058391473,0.00062095263,0.0027353016,0.00020342122,0.000010844892,0.0000013906614,0.000016349935,0.0005835838],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985683,0.00037744205,0.00029775727,0.00013040667,0.00013998021,0.00048609782],"domain_scores_gemma":[0.9990162,0.00033450883,0.00015749701,0.00029336294,0.000056413788,0.00014199947],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0031656323,0.00012766171,0.00018199366,0.000024053794,0.0020106211,0.00004773348,0.00086387125,0.00008359327,0.005643242],"category_scores_gemma":[0.00026397375,0.00007723565,0.00010455273,0.000072198454,0.00045868522,0.00006491077,0.00039042855,0.000491851,0.000114285765],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024426936,0.00014443419,0.0069611883,0.000008658608,0.00026170295,0.000011339685,0.011356417,0.0012721488,0.15520017,0.0012994967,0.81393534,0.0071064066],"study_design_scores_gemma":[0.0012044954,0.00092381577,0.099579975,0.000011672619,0.0000814234,0.00038629054,0.0007390891,0.00009327494,0.0038737073,0.011112184,0.8816676,0.00032647327],"about_ca_topic_score_codex":0.000081358674,"about_ca_topic_score_gemma":0.0024441616,"teacher_disagreement_score":0.15132646,"about_ca_system_score_codex":0.00034899457,"about_ca_system_score_gemma":0.00020367983,"threshold_uncertainty_score":0.9992886},"labels":[],"label_agreement":null},{"id":"W2056361009","doi":"10.1038/ismej.2014.151","title":"Spatial patterns of microbial diversity and activity in an aged creosote-contaminated site","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Golder Associates (Canada)","funders":"Helsingin Yliopiston Tiedesäätiö; Maj ja Tor Nesslingin Säätiö; Helsingin Yliopisto","keywords":"Creosote; Pollution; Ecology; Biology; Microbial population biology; Bioremediation; Pollutant; Species evenness; Microbial ecology; Species richness; Environmental chemistry; Environmental science; Contamination","score_opus":0.011115549163248402,"score_gpt":0.2091355376857706,"score_spread":0.1980199885225222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056361009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992138,0.0000014130948,0.0003915198,0.00017467224,0.00007421876,0.000050400908,0.00000518382,0.000003146796,0.00008563254],"genre_scores_gemma":[0.9997347,0.000008645088,0.000020830044,0.00016914628,0.000032272314,1.7638735e-7,0.0000019551358,0.000002772986,0.000029515815],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988424,0.00079038565,0.00010060664,0.000076314376,0.000052082927,0.00013818963],"domain_scores_gemma":[0.9996122,0.00010064268,0.00010525665,0.0001347419,0.0000047630147,0.0000423716],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006482474,0.00006569075,0.00012946891,0.000021280823,0.0005367657,0.0000074086197,0.0002555673,0.000063243155,0.0010429702],"category_scores_gemma":[0.000018315575,0.00004917639,0.000025391812,0.00003417791,0.00017142331,0.00012873093,0.0006763083,0.00043303525,0.000010225881],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121010424,0.00008355806,0.6657987,0.0000022546815,0.0000053841495,0.0000022105453,0.0031213618,0.000095772666,0.3281845,0.000002542081,0.00006351685,0.0025191605],"study_design_scores_gemma":[0.0005175349,0.00018259806,0.9946439,0.0000054965326,0.000009326605,0.00002528602,0.000039328508,0.00028359878,0.003868793,0.00030788363,0.000059840575,0.00005636765],"about_ca_topic_score_codex":0.0049149953,"about_ca_topic_score_gemma":0.030963052,"teacher_disagreement_score":0.3288452,"about_ca_system_score_codex":0.000032673102,"about_ca_system_score_gemma":0.0000036529398,"threshold_uncertainty_score":0.99987024},"labels":[],"label_agreement":null},{"id":"W2062307117","doi":"10.1038/ismej.2014.210","title":"Distinct soil microbial diversity under long-term organic and conventional farming","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":1462,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agroscope; Bundesamt für Landwirtschaft; Sveriges Lantbruksuniversitet; Forschungsinstitut für biologischen Landbau; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; McGill University; University of Southern California; University of Glasgow; National Science Foundation","keywords":"Biology; Term (time); Geomicrobiology; Organic farming; Diversity (politics); Agriculture; Microbial ecology; Ecology; Soil microbiology; Agroforestry; Environmental biotechnology; Soil water; Bacteria","score_opus":0.015669693827787785,"score_gpt":0.2014153065458108,"score_spread":0.185745612718023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062307117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99793875,0.00005180224,0.0000598938,0.0015703996,0.00019589275,0.0000275615,0.0000040636314,0.000013481763,0.00013815182],"genre_scores_gemma":[0.9989291,0.000021961509,0.000008314185,0.00035636808,0.00046065266,1.8166e-7,0.0000052505743,6.0955006e-7,0.00021760305],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999434,0.00008649033,0.000098459706,0.00008764131,0.00014391303,0.00014952202],"domain_scores_gemma":[0.9996874,0.00009931875,0.00007447942,0.000024118692,0.000037141675,0.000077575925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033014186,0.00007340003,0.00008080821,0.000005234263,0.0007540575,0.00008934529,0.00018122671,0.000039167524,0.00040856516],"category_scores_gemma":[0.000018293435,0.000023951741,0.0000677227,0.000059419945,0.00008499488,0.000053157015,0.00019266212,0.00017487258,0.000014277049],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006539302,0.00008680716,0.8426001,0.000005759903,0.00007830616,0.000011243497,0.0001929567,0.000007053033,0.12992533,0.00087531976,0.00043266907,0.025719088],"study_design_scores_gemma":[0.00020737505,0.000056361616,0.9965763,0.000008631955,0.000027969158,0.00031471282,0.00006620124,0.0002703635,0.00024567574,0.0020462552,0.00009705325,0.00008307408],"about_ca_topic_score_codex":0.00004869142,"about_ca_topic_score_gemma":0.0008685087,"teacher_disagreement_score":0.15397625,"about_ca_system_score_codex":0.000021543872,"about_ca_system_score_gemma":0.000005497464,"threshold_uncertainty_score":0.5799677},"labels":[],"label_agreement":null},{"id":"W2062570506","doi":"10.1038/ismej.2008.52","title":"Long-term experimental warming alters nitrogen-cycling communities but site factors remain the primary drivers of community structure in high arctic tundra soils","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Northern British Columbia; Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"University of Northern British Columbia","keywords":"Species richness; Biology; Ecology; Community structure; Tundra; Abundance (ecology); Global warming; Relative species abundance; Plant community; Arctic; Microbial population biology; Climate change","score_opus":0.05558263480318241,"score_gpt":0.25226651123513927,"score_spread":0.19668387643195687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062570506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997989,0.0008441717,0.000004461375,0.00023398829,0.00030881245,0.00011715675,0.0004167139,0.000008528924,0.00007717177],"genre_scores_gemma":[0.99848133,0.0005101388,0.000023146153,0.0004293119,0.00013541582,3.085215e-7,0.0003994631,0.000007104482,0.000013750796],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981267,0.00077630044,0.00035532415,0.000060597955,0.00034120562,0.00033988495],"domain_scores_gemma":[0.99857897,0.00073906913,0.0002450243,0.00031763208,0.000034802848,0.000084492174],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00056154624,0.00018570454,0.00026842084,0.00010325977,0.0015139366,0.000074455726,0.00065706193,0.00006261919,0.0015098241],"category_scores_gemma":[0.000014825784,0.00010621476,0.000110836525,0.00013757551,0.0005060132,0.00029800733,0.000072562136,0.0011658566,0.0000061076585],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052187683,0.0000239222,0.9276581,0.000020532902,0.00003352645,0.00002442802,0.06721451,0.000937792,0.0037997134,0.000001324717,0.000044285756,0.0001896799],"study_design_scores_gemma":[0.00044454666,0.00010939895,0.9501985,0.000096397205,0.000023488265,0.00062908494,0.04560761,0.00015362397,0.0023342464,0.00024683218,0.00001027168,0.00014604439],"about_ca_topic_score_codex":0.024965547,"about_ca_topic_score_gemma":0.024489446,"teacher_disagreement_score":0.022540359,"about_ca_system_score_codex":0.00003845927,"about_ca_system_score_gemma":0.000052513005,"threshold_uncertainty_score":0.99978596},"labels":[],"label_agreement":null},{"id":"W2062960446","doi":"10.1038/ismej.2008.10","title":"Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology","year":2008,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":221,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Biology; Metagenomics; Microbial ecology; Biomass (ecology); Microbial population biology; Ecology; Microorganism; Molecular ecology; Genome; Environmental DNA; Organism; Computational biology; Gene; Biodiversity; Genetics; Bacteria","score_opus":0.05690424188305923,"score_gpt":0.3368815586855204,"score_spread":0.2799773168024612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062960446","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1924828,0.79831564,0.00031182088,0.0016295952,0.0024011834,0.0024746337,0.00039590895,0.00004113784,0.0019472602],"genre_scores_gemma":[0.015549609,0.983498,0.00012044144,0.00027904147,0.0002923561,0.000012222536,0.000089531684,0.000028136663,0.00013066799],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967078,0.001953904,0.00065339287,0.00020594019,0.0001460997,0.00033289578],"domain_scores_gemma":[0.996005,0.0022032405,0.0010693703,0.0006464556,0.00001376331,0.0000621686],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008663105,0.00031422998,0.0008144058,0.00005553614,0.0010246697,0.000027371301,0.0014599924,0.00031722346,0.0038246543],"category_scores_gemma":[0.00015874431,0.00015047473,0.0006338595,0.0001630019,0.0005495994,0.00007266509,0.0004033706,0.0020707701,0.000471503],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005999,0.0020160961,0.0013681831,0.00037748832,0.0030537336,0.00003552536,0.027251989,0.013862258,0.01008661,0.00009767823,0.18774445,0.75350606],"study_design_scores_gemma":[0.0004461569,0.000461303,0.005811417,0.0005711813,0.00031527708,0.0005349574,0.00008536841,0.000071999224,0.000035282257,0.0006324699,0.9906998,0.00033474044],"about_ca_topic_score_codex":0.0009877115,"about_ca_topic_score_gemma":0.00024662376,"teacher_disagreement_score":0.8029554,"about_ca_system_score_codex":0.0005123289,"about_ca_system_score_gemma":0.0001311327,"threshold_uncertainty_score":0.997086},"labels":[],"label_agreement":null},{"id":"W2063834698","doi":"10.1038/ismej.2014.253","title":"The effect of nutrients on carbon and nitrogen fixation by the UCYN-A–haptophyte symbiosis","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Max-Planck-Gesellschaft; International Max Planck Research School for Environmental, Cellular and Molecular Microbiology","keywords":"Haptophyte; Nitrate; Phytoplankton; Nutrient; Nitrogen; Carbon fixation; Environmental chemistry; Cyanobacteria; Redfield ratio; Ammonium; Nitrogen fixation; Biology; Ecology; Chemistry; Botany; Photosynthesis; Bacteria","score_opus":0.0032479310602531292,"score_gpt":0.1973697901748884,"score_spread":0.19412185911463528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063834698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99610555,0.00006446989,0.0000065273953,0.001533913,0.000120131685,0.00009785249,0.0000013216093,0.0000028873194,0.002067353],"genre_scores_gemma":[0.9995092,0.00007872648,0.00000284072,0.00027741055,0.000043911095,0.0000025388363,8.194446e-7,0.0000036693127,0.00008089004],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986877,0.000930221,0.0001122555,0.00005343158,0.00009069691,0.00012573888],"domain_scores_gemma":[0.9988368,0.0008062244,0.00013308554,0.00019569595,0.000004012919,0.000024156792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011757965,0.000067007764,0.0000861612,0.0000063014286,0.0006980373,0.000015984735,0.00033730583,0.00004063846,0.00010304468],"category_scores_gemma":[0.00006960967,0.00002741301,0.000035826375,0.000047742953,0.00030294983,0.000024353976,0.00010602554,0.00031605846,0.000018016448],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017995377,0.00021866459,0.27570534,0.000023965258,0.00033076614,0.0000012101939,0.0046012644,0.0007679993,0.5743251,0.0013781778,0.07988106,0.06096691],"study_design_scores_gemma":[0.004726276,0.009634269,0.490159,0.00010738876,0.0003883044,0.00031419762,0.00039073869,0.0041615674,0.329468,0.098320484,0.06170042,0.0006293312],"about_ca_topic_score_codex":0.0000844744,"about_ca_topic_score_gemma":0.000046614536,"teacher_disagreement_score":0.24485707,"about_ca_system_score_codex":0.000022324613,"about_ca_system_score_gemma":0.0000020918292,"threshold_uncertainty_score":0.5368809},"labels":[],"label_agreement":null},{"id":"W2065537854","doi":"10.1038/ismej.2014.89","title":"Can marine bacteria be recruited from freshwater sources and the air?","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Svenska Forskningsrådet Formas; Vetenskapsrådet; Stiftelsen för Strategisk Forskning; Uppsala Multidisciplinary Center for Advanced Computational Science; Wenner-Gren Stiftelserna","keywords":"Biological dispersal; Biology; Ecology; Generalist and specialist species; Pelagic zone; Taxon; Habitat; Sediment; Niche; Marine habitats; Population","score_opus":0.010086720133835344,"score_gpt":0.19750224596780133,"score_spread":0.18741552583396598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065537854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9759186,0.000010373583,0.000015332636,0.021834843,0.00014413791,0.00005548746,0.0000067919455,0.000006294849,0.00200813],"genre_scores_gemma":[0.99368477,0.00004493518,0.00015217996,0.0051708026,0.00015871174,0.000001567615,0.000008732307,0.0000052873465,0.00077302835],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987895,0.00080891204,0.000121729165,0.00006948792,0.000055750665,0.00015463692],"domain_scores_gemma":[0.9993492,0.0003083107,0.00008274959,0.00021174595,0.0000037853818,0.00004423884],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00071615994,0.00007602905,0.00011798138,0.000010739597,0.0006143332,0.000032046933,0.0003983279,0.00004887855,0.015354863],"category_scores_gemma":[0.00003355217,0.00003517634,0.000033591306,0.000032983207,0.00056858937,0.000044181063,0.0004257763,0.0004284467,0.00007037612],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023560931,0.0002574756,0.1538703,0.000008979426,0.000535273,0.00001538825,0.06275133,0.0013017739,0.47097155,0.0021882446,0.26505354,0.040690027],"study_design_scores_gemma":[0.0018232311,0.00013887991,0.52583003,0.000008383978,0.00006738224,0.00019051996,0.00034026333,0.0007002182,0.0019309416,0.089348,0.37942907,0.00019308241],"about_ca_topic_score_codex":0.0020570331,"about_ca_topic_score_gemma":0.014439231,"teacher_disagreement_score":0.46904063,"about_ca_system_score_codex":0.000016786664,"about_ca_system_score_gemma":0.0000035511998,"threshold_uncertainty_score":0.9855452},"labels":[],"label_agreement":null},{"id":"W2065701958","doi":"10.1038/ismej.2013.152","title":"Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Joint Genome Institute; Tula Foundation; Canadian Institute for Advanced Research; U.S. Department of Energy","keywords":"Biology; Ribosomal RNA; 16S ribosomal RNA; Sulfur metabolism; Archaea; Anoxic waters; Gene; Genetics; Ecology","score_opus":0.009332738833885586,"score_gpt":0.18439567953169067,"score_spread":0.1750629406978051,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065701958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995289,0.000015729605,0.0000014988236,0.0016057265,0.00004665606,0.000153385,6.743843e-7,0.000003125178,0.0028842045],"genre_scores_gemma":[0.9990793,0.00004982254,0.000076232915,0.00059419486,0.000039620492,0.000008780312,0.000002036107,0.0000051975967,0.00014481283],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999004,0.00047225837,0.00020513634,0.00006129389,0.00006719717,0.00019013633],"domain_scores_gemma":[0.9995724,0.000046012738,0.00012952778,0.00022211095,0.000004354988,0.000025568519],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006426668,0.00007577944,0.000120616896,0.00002267943,0.00019756502,0.00002286303,0.0007124915,0.000042502692,0.013683324],"category_scores_gemma":[0.000013619974,0.000037731297,0.000038754893,0.00008274393,0.00026785576,0.00010700659,0.00058989273,0.00045247033,0.00034005998],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006291376,0.0001417953,0.046066955,0.0000037558136,0.000018039646,0.0000017637456,0.003611673,0.00013570841,0.9449035,0.000044676388,0.0009876557,0.0040215873],"study_design_scores_gemma":[0.00023243444,0.00010032854,0.9871087,0.0000047690933,0.000007697228,0.00012903006,0.00037638188,0.00010116657,0.0015293949,0.009218064,0.001134666,0.00005733544],"about_ca_topic_score_codex":0.00279513,"about_ca_topic_score_gemma":0.0019430675,"teacher_disagreement_score":0.9433741,"about_ca_system_score_codex":0.000038058846,"about_ca_system_score_gemma":0.000008905698,"threshold_uncertainty_score":0.9872183},"labels":[],"label_agreement":null},{"id":"W2067237058","doi":"10.1038/ismej.2008.26","title":"Humoral immunity to commensal oral bacteria in human infants: evidence that <i>Streptococcus mitis</i> biovar 1 colonization induces strain-specific salivary immunoglobulin A antibodies","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Dental and Craniofacial Research","keywords":"Biology; Humoral immunity; Microbiology; Antibody; Colonization; Streptococcus mitis; Immunity; Biovar; Saliva; Immunology; Immunoglobulin A; Bacteria; Immunoglobulin G; Strain (injury); Immune system; Virology; Streptococcus","score_opus":0.10743062947587674,"score_gpt":0.343190734901553,"score_spread":0.23576010542567627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067237058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964419,0.0006121367,0.00009658759,0.0013612763,0.00034659635,0.00077478535,0.000035660487,0.000053891938,0.00027719347],"genre_scores_gemma":[0.9977041,0.0007974162,0.00062095566,0.00041149743,0.00023763247,0.000039302016,0.000042158375,0.000029481982,0.00011745674],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99806577,0.00033265768,0.0005719304,0.00023573828,0.00035825357,0.0004356692],"domain_scores_gemma":[0.9987668,0.00013185562,0.00029950516,0.00043661415,0.0001815179,0.00018372553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051015214,0.00028707052,0.0004629762,0.0002659295,0.0009068093,0.00012776745,0.0002645283,0.00011890274,0.0005948646],"category_scores_gemma":[0.0000928935,0.0002019942,0.00015049808,0.00053237256,0.00025235646,0.00039200633,0.00012788904,0.00072826527,0.000055437817],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036299383,0.0007205202,0.88513434,0.000015678035,0.00022596432,0.00046078255,0.0025801684,0.000027465643,0.10488351,0.000057067402,0.0027337356,0.0027977822],"study_design_scores_gemma":[0.0019721924,0.0007704966,0.98255676,0.00060011324,0.00006302316,0.0017828125,0.00058222155,0.000005939007,0.010383428,0.00010373629,0.00097544695,0.00020384014],"about_ca_topic_score_codex":0.00050788437,"about_ca_topic_score_gemma":0.00006676196,"teacher_disagreement_score":0.09742241,"about_ca_system_score_codex":0.00028896495,"about_ca_system_score_gemma":0.00014417736,"threshold_uncertainty_score":0.8237085},"labels":[],"label_agreement":null},{"id":"W2067247913","doi":"10.1038/ismej.2013.237","title":"Humboldt’s spa: microbial diversity is controlled by temperature in geothermal environments","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":224,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Geological Survey of Canada; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Alberta Innovates - Technology Futures","keywords":"Biology; Species richness; Geothermal gradient; Tropics; Latitude; Archaea; Ecology; Alpha diversity; Range (aeronautics); Species diversity; Biodiversity; Diversity (politics); Bacteria; Geology","score_opus":0.004535336408645175,"score_gpt":0.18142471585384976,"score_spread":0.17688937944520458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067247913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99526775,0.00002988646,0.000024374229,0.0022524027,0.00019903843,0.00013136493,0.000007980238,0.000004677965,0.0020825183],"genre_scores_gemma":[0.9927293,0.00004948129,0.00002506449,0.004864006,0.00009197153,0.0000013920788,0.000004297284,0.0000072120765,0.0022272847],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998576,0.0006829487,0.00019649538,0.00012830865,0.00011642827,0.00029983412],"domain_scores_gemma":[0.9994786,0.00010777962,0.00012697814,0.00021824906,0.0000021227365,0.00006627269],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00081062247,0.00013155479,0.00024122401,0.00001970206,0.00086752337,0.000024435594,0.0006301361,0.00013508099,0.010558218],"category_scores_gemma":[0.000020147418,0.00008988439,0.00008986517,0.000056129902,0.00028121093,0.00011193487,0.0005594211,0.00081104616,0.0005068695],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047158732,0.00026181195,0.033177346,0.0000014993497,0.00005781019,0.0000057985035,0.0026695663,0.0007098963,0.7621621,0.000026978812,0.19994718,0.00050845643],"study_design_scores_gemma":[0.024571488,0.00078467414,0.65874213,0.00003728486,0.00016323446,0.0003941438,0.00046394867,0.0006035986,0.017404597,0.0068926704,0.28890806,0.0010341464],"about_ca_topic_score_codex":0.0002458335,"about_ca_topic_score_gemma":0.00031838086,"teacher_disagreement_score":0.7447575,"about_ca_system_score_codex":0.000101074475,"about_ca_system_score_gemma":0.000005985876,"threshold_uncertainty_score":0.99034625},"labels":[],"label_agreement":null},{"id":"W2068153795","doi":"10.1038/ismej.2011.157","title":"Magnitude and regulation of bacterioplankton respiratory quotient across freshwater environmental gradients","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal ecosystems","field":"Earth and Planetary Sciences","cited_by":202,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Vetenskapsrådet; Hydro-Québec","keywords":"Bacterioplankton; Biology; Respiratory quotient; Magnitude (astronomy); Ecology; Phytoplankton; Nutrient","score_opus":0.018816275737466606,"score_gpt":0.18821786582780137,"score_spread":0.16940159009033476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068153795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976178,0.00014847735,0.000014174289,0.000016299735,0.00020690938,0.00005540544,0.00005733925,0.0000033809715,0.0018802295],"genre_scores_gemma":[0.9994699,0.00003342167,0.00007235207,0.000060421622,0.000083017396,1.7971647e-7,0.000008077601,0.0000019224087,0.00027075384],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993507,0.000070410104,0.00019590753,0.0000730452,0.00016122404,0.00014869233],"domain_scores_gemma":[0.99969155,0.000012631637,0.00012625029,0.00009333059,0.0000073170463,0.00006890001],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00035364964,0.00006681828,0.000085287815,0.000023351246,0.00015830246,0.000030385521,0.000116091454,0.000026054713,0.0024457604],"category_scores_gemma":[0.0000027043136,0.00003919128,0.000029776205,0.000024255472,0.000071785165,0.00015136001,0.000022508995,0.00010623098,0.00003357601],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010201156,0.000022613665,0.9572395,0.000011791867,0.000024474879,0.000008159854,0.0029329723,0.000020054376,0.0011167272,0.000011267274,0.0002698735,0.038240522],"study_design_scores_gemma":[0.00020095022,0.00018288527,0.99165916,0.000012125126,0.000008481045,0.0001226945,0.00035234986,0.00022052895,0.00080021506,0.0003522812,0.006032319,0.00005600433],"about_ca_topic_score_codex":0.00044932158,"about_ca_topic_score_gemma":0.0019783895,"teacher_disagreement_score":0.038184516,"about_ca_system_score_codex":0.000002585693,"about_ca_system_score_gemma":0.000008252453,"threshold_uncertainty_score":0.99846613},"labels":[],"label_agreement":null},{"id":"W2072365345","doi":"10.1038/ismej.2014.219","title":"Is there a common water-activity limit for the three domains of life?","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":327,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Universität Salzburg; Department for Employment and Learning, Northern Ireland; Bangor University; Queen's University; Fundação de Amparo à Pesquisa do Estado de São Paulo; Queen's University Belfast","keywords":"Halophile; Biology; Halobacterium; Osmoprotectant; Bacteria; Extremophile; Water activity; Archaea; Sarcina; Botany; Extreme environment; Microbiology; Food science; Microorganism; Biochemistry; Water content","score_opus":0.025890884654373163,"score_gpt":0.24615726498775822,"score_spread":0.22026638033338505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072365345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98705304,0.000028651448,0.0020733196,0.009002088,0.00014045228,0.0001283218,0.0000045592456,0.0000042773654,0.0015652799],"genre_scores_gemma":[0.9984085,0.000031262574,0.000063572894,0.0012514346,0.00009864057,0.000003770067,5.8763413e-7,0.000006175815,0.00013605],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999238,0.00030997128,0.00013036089,0.000058672293,0.000070869195,0.00019213742],"domain_scores_gemma":[0.9989681,0.00055543624,0.00011152815,0.00032042485,0.0000072187377,0.00003725883],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010309969,0.000075303615,0.00014110579,0.0000071414224,0.00073146797,0.000013635861,0.00063899305,0.000058339618,0.0030944976],"category_scores_gemma":[0.000028220491,0.00003222447,0.00010015693,0.00003138666,0.00034489678,0.00005704775,0.00022127574,0.00037632327,0.000084149935],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017386953,0.00091552903,0.086952426,0.000044522054,0.00062649074,0.0000017629582,0.016000409,0.0061032525,0.7053445,0.0021335997,0.120950475,0.05918832],"study_design_scores_gemma":[0.0015028032,0.0011015354,0.69103825,0.00001871399,0.00014113524,0.000097964345,0.0002996467,0.004897824,0.02947249,0.13649218,0.1346587,0.00027879095],"about_ca_topic_score_codex":0.00023554887,"about_ca_topic_score_gemma":0.0018806021,"teacher_disagreement_score":0.675872,"about_ca_system_score_codex":0.000021309372,"about_ca_system_score_gemma":0.0000070643,"threshold_uncertainty_score":0.9978168},"labels":[],"label_agreement":null},{"id":"W2072372936","doi":"10.1038/ismej.2009.113","title":"Global distribution of cyanobacterial ecotypes in the cold biosphere","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval","funders":"ArcticNet; Parks Canada","keywords":"Biology; Microbial mat; Ecotype; Ecology; Arctic; Biogeography; Extreme environment; Cyanobacteria; Arctic vegetation; Phylogenetic diversity; Botany; Phylogenetic tree; Paleontology","score_opus":0.007098596268628026,"score_gpt":0.2459526827733663,"score_spread":0.23885408650473827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072372936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99316245,0.000025247777,0.00006487813,0.0040344135,0.00007218561,0.000060600338,0.000012297884,0.0000019307645,0.0025659634],"genre_scores_gemma":[0.9996134,0.00003583244,0.00001746841,0.00021591915,0.00007928165,5.190808e-7,0.0000014846651,8.59385e-7,0.000035212048],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993082,0.00014627277,0.000116136536,0.000046571502,0.0001835428,0.00019922266],"domain_scores_gemma":[0.9997892,0.000025583851,0.00005319234,0.00009160285,0.0000035215587,0.000036900004],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006405682,0.00004051618,0.00005884728,0.000003242091,0.00010997578,0.000028036538,0.0003385669,0.000028379249,0.00094704336],"category_scores_gemma":[0.00004620446,0.000020273297,0.00003208698,0.00013108303,0.00010019663,0.00008762378,0.000036654652,0.00013655887,0.000079196754],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010922813,0.0014527609,0.65397656,0.000007823681,0.00006907574,0.00017018177,0.0019072922,0.0032734438,0.11688399,0.009163289,0.13814375,0.073859535],"study_design_scores_gemma":[0.00024597417,0.00019553433,0.98585105,0.0000029743735,0.0000035632575,0.00011537004,0.00007265012,0.00006596097,0.0004947453,0.004641388,0.008280098,0.00003069079],"about_ca_topic_score_codex":0.00013088108,"about_ca_topic_score_gemma":0.00050776964,"teacher_disagreement_score":0.33187446,"about_ca_system_score_codex":0.0001192121,"about_ca_system_score_gemma":0.000015724858,"threshold_uncertainty_score":0.9999662},"labels":[],"label_agreement":null},{"id":"W2074962315","doi":"10.1038/ismej.2014.146","title":"Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick; Dalhousie University; Canadian Institute for Advanced Research","funders":"Division of Integrative Organismal Systems; University of Exeter; Princeton University; Gordon and Betty Moore Foundation; U.S. Department of Energy; David and Lucile Packard Foundation; National Science Foundation","keywords":"Biology; Haptophyte; Riboswitch; Thiamine; Thiamine pyrophosphate; Gene; Transcriptome; Prochlorococcus; Genetics; Biochemistry; Gene expression; Phytoplankton; Non-coding RNA; Enzyme; Cyanobacteria; Ecology; Bacteria","score_opus":0.01138627959633774,"score_gpt":0.21956271683765527,"score_spread":0.20817643724131754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074962315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972048,0.000005363389,0.0006802523,0.0010721618,0.00006473062,0.00009525563,0.0000023559621,0.000003615051,0.0008714969],"genre_scores_gemma":[0.99781,0.000022486107,0.0010904667,0.00037384065,0.000055673863,0.0000022190081,0.0000019704241,0.0000068983695,0.0006364555],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990796,0.00034855606,0.00021288317,0.00009123445,0.00008832132,0.00017942372],"domain_scores_gemma":[0.9992889,0.0003222679,0.00013086664,0.00020886373,0.000007177665,0.00004189548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006840532,0.000092424765,0.00018364425,0.000036475558,0.00013558661,0.000013637295,0.00043263353,0.000032929118,0.0005492635],"category_scores_gemma":[0.00011064147,0.000054530108,0.000032948272,0.000116571966,0.00020432248,0.00013671795,0.0002806651,0.00035586455,0.00004268472],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005541855,0.00032762205,0.8154296,0.000013991084,0.00005491531,0.00001062118,0.003955207,0.016275922,0.15414263,0.00011591823,0.0017916462,0.007327732],"study_design_scores_gemma":[0.0005129426,0.00034368449,0.99366033,0.000028118971,0.000009313429,0.000042687207,0.000161726,0.00028003435,0.0030638909,0.0011434528,0.0006717265,0.000082068786],"about_ca_topic_score_codex":0.0004214047,"about_ca_topic_score_gemma":0.005999353,"teacher_disagreement_score":0.17823075,"about_ca_system_score_codex":0.000038999795,"about_ca_system_score_gemma":0.000009182038,"threshold_uncertainty_score":0.60140496},"labels":[],"label_agreement":null},{"id":"W2075262647","doi":"10.1038/ismej.2014.238","title":"Evidence for extensive gene flow and <i>Thermotoga</i> subpopulations in subsurface and marine environments","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Norges Forskningsråd; Dartmouth College","keywords":"Biology; Gene flow; Thermotoga maritima; Biosphere; Ecology; Gene; Genetics; Genetic variation","score_opus":0.03203519976494901,"score_gpt":0.2557137210981011,"score_spread":0.22367852133315208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075262647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99733573,0.00009101786,0.00089125853,0.0013737974,0.00005439191,0.00013672085,0.000002092709,0.0000021536646,0.000112806185],"genre_scores_gemma":[0.9972904,0.00041699063,0.0014092213,0.00066496845,0.00003330391,0.0000037943137,0.0000023350883,0.0000052710534,0.00017373412],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993456,0.00023864584,0.00012435309,0.000095254385,0.000046225032,0.00014989445],"domain_scores_gemma":[0.99939734,0.0003572542,0.000066301676,0.00013093452,0.0000026714981,0.000045499037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061398733,0.000070509646,0.000101364225,0.000012833978,0.00032855882,0.00001440185,0.00014240654,0.000044130178,0.00049788883],"category_scores_gemma":[0.00008264045,0.000051157498,0.000017857767,0.00003336086,0.00020259884,0.000106416956,0.00020181127,0.00020998818,0.000015842825],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034555336,0.00012987595,0.43609634,0.000011779993,0.000036637302,0.0000046705054,0.0032789893,0.013647128,0.5057103,0.0001572448,0.0037344524,0.03684699],"study_design_scores_gemma":[0.00045704067,0.00012745838,0.9798461,0.000011344627,0.000016467731,0.000120527846,0.00003898369,0.0045151534,0.0006140854,0.0112657,0.0028981317,0.00008897858],"about_ca_topic_score_codex":0.00012121725,"about_ca_topic_score_gemma":0.00089208485,"teacher_disagreement_score":0.54374975,"about_ca_system_score_codex":0.00003038974,"about_ca_system_score_gemma":0.00000306182,"threshold_uncertainty_score":0.5451533},"labels":[],"label_agreement":null},{"id":"W2076248826","doi":"10.1038/ismej.2007.35","title":"Genomic plasticity in prokaryotes: the case of the square haloarchaeon","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Ministerio de Economía y Competitividad; Canadian Institutes of Health Research; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Killam Trusts; Dalhousie University; European Commission","keywords":"Biology; Genome; Metagenomics; GC-content; Mobile genetic elements; Gene; Strain (injury); Genetics; Genomics; Comparative genomics; Genomic island; Computational biology","score_opus":0.010095991434197649,"score_gpt":0.2420060802424069,"score_spread":0.23191008880820926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076248826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99673724,0.000020803795,0.00029237647,0.0018281691,0.00020397278,0.00013109895,0.000004681599,0.0000025330232,0.00077909854],"genre_scores_gemma":[0.9993337,0.000014422685,0.0000637681,0.00021130797,0.00008345896,9.922511e-7,9.905355e-8,0.00000549817,0.0002867686],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99937946,0.00008310297,0.00021209734,0.00006491937,0.00008038592,0.00018001834],"domain_scores_gemma":[0.99953926,0.00014691464,0.00013116865,0.00014412054,0.000006131105,0.00003238547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004986281,0.00006479211,0.00006387713,0.000015055326,0.00032084135,0.000023467826,0.00032334775,0.00002521893,0.00083182665],"category_scores_gemma":[0.00003787734,0.000027276199,0.0000697017,0.00012091779,0.00026178698,0.000082468774,0.00017511382,0.0004230092,0.00004173857],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010538305,0.00018045955,0.019432306,0.00000861812,0.000029843814,0.00034303262,0.012512599,0.0031828121,0.94292873,0.00012655948,0.0023508193,0.018798856],"study_design_scores_gemma":[0.00027555603,0.000061374325,0.96469134,0.00004197992,0.000024983701,0.00966573,0.0022150807,0.00021974243,0.018751381,0.00073790335,0.0032281878,0.000086728556],"about_ca_topic_score_codex":0.0014694778,"about_ca_topic_score_gemma":0.010096674,"teacher_disagreement_score":0.94525903,"about_ca_system_score_codex":0.00012476707,"about_ca_system_score_gemma":0.000014556145,"threshold_uncertainty_score":0.9107918},"labels":[],"label_agreement":null},{"id":"W2076453552","doi":"10.1038/ismej.2013.251","title":"Genomic analysis of <i>Chthonomonas calidirosea</i>, the first sequenced isolate of the phylum <i>Armatimonadetes</i>","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Foundation for Research, Science and Technology","keywords":"Biology; Phylum; Genome; Genetics; Horizontal gene transfer; Gene; Operon; Comparative genomics; Lineage (genetic); Genome size; Metagenomics; Evolutionary biology; Genomics; Escherichia coli","score_opus":0.007828111490086182,"score_gpt":0.21117628735126534,"score_spread":0.20334817586117915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076453552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99565613,0.0012367185,0.0004025261,0.0018308331,0.00018929856,0.00010780636,0.000031752243,8.510491e-7,0.00054410606],"genre_scores_gemma":[0.9984078,0.0004971597,0.00008922068,0.0006928183,0.0001895508,0.000004045959,0.0000014941176,0.0000118629805,0.000106049796],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998961,0.00016688845,0.00038461984,0.00012920561,0.00016085684,0.00019745828],"domain_scores_gemma":[0.9988108,0.00006405511,0.00043251226,0.0005469819,0.00010868707,0.000036955327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000691025,0.000136198,0.00024707764,0.000032911626,0.00034324676,0.000022237085,0.00074992474,0.000058043068,0.000014427024],"category_scores_gemma":[0.00004480029,0.00006427107,0.00038329736,0.00020945043,0.0002802953,9.287323e-7,0.00023719938,0.00015905706,0.000001292247],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031185136,0.000025069714,0.013702635,0.000008356323,0.0011596868,1.5823719e-7,0.0005664148,0.008541937,0.97439766,0.00006812119,0.0009892742,0.00050949637],"study_design_scores_gemma":[0.0009254641,0.0003395982,0.5952434,0.000029197863,0.0023563153,0.00007771467,0.0005263706,0.0057060835,0.32464254,0.0017829764,0.06797809,0.00039224062],"about_ca_topic_score_codex":0.000054560205,"about_ca_topic_score_gemma":0.00010971901,"teacher_disagreement_score":0.6497551,"about_ca_system_score_codex":0.000009313297,"about_ca_system_score_gemma":0.000055282653,"threshold_uncertainty_score":0.26400113},"labels":[],"label_agreement":null},{"id":"W2076481630","doi":"10.1038/ismej.2009.51","title":"The slow:fast substitution ratio reveals changing patterns of natural selection in γ-proteobacterial genomes","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Lawrence Berkeley National Laboratory; Natural Sciences and Engineering Research Council of Canada; Biological and Environmental Research; Office of Science; National Institutes of Health; U.S. Department of Energy","keywords":"Biology; Genome; Gene; Natural selection; Buchnera; Evolutionary biology; Negative selection; Phylogenetics; Ecological niche; Genetics; Adaptation (eye); Selection (genetic algorithm); Ecology","score_opus":0.004948718790014935,"score_gpt":0.23142759938975685,"score_spread":0.22647888059974192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076481630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99139714,0.000598926,0.006785526,0.00075476273,0.00028555372,0.000108627646,0.000002557335,0.0000024394585,0.000064440006],"genre_scores_gemma":[0.99794453,0.00058100495,0.00010595667,0.00011261064,0.0005509734,0.0000019807323,0.000008085868,0.000004287236,0.0006905572],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993202,0.000103467144,0.00021316242,0.00007850551,0.000107626176,0.0001770054],"domain_scores_gemma":[0.9996725,0.000006882685,0.00013947119,0.00008923915,0.00006832425,0.000023633585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040377103,0.00007276704,0.0000717038,0.000040854415,0.00021994677,0.000038176695,0.00014460359,0.00005362219,0.000006965449],"category_scores_gemma":[0.000032613636,0.000044389908,0.00005681546,0.000084898435,0.00003182248,0.000005158998,0.000020521702,0.00015367461,0.0000013971033],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009394992,0.000016879221,0.0017432527,0.000002411084,0.00001658621,5.927619e-7,0.00016047848,0.00094596774,0.9894052,0.00032477092,0.00009648674,0.007193421],"study_design_scores_gemma":[0.0039920085,0.0016407658,0.65440005,0.0002011631,0.00010088134,0.0012053807,0.0015975997,0.020159485,0.30106613,0.0037171713,0.01115529,0.0007640773],"about_ca_topic_score_codex":0.000004211647,"about_ca_topic_score_gemma":0.000060875987,"teacher_disagreement_score":0.68833905,"about_ca_system_score_codex":0.000027533564,"about_ca_system_score_gemma":0.000048543472,"threshold_uncertainty_score":0.18101679},"labels":[],"label_agreement":null},{"id":"W2077681695","doi":"10.1038/ismej.2011.123","title":"Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":163,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Universidad Nacional de Colombia","keywords":"Biology; Plague (disease); Coral; White (mutation); Coral reef; Reef; Caribbean region; Ecology; Cnidaria; Anthozoa; Archaeology","score_opus":0.025640425045997197,"score_gpt":0.21863831624805996,"score_spread":0.19299789120206276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077681695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99553525,0.00004776677,0.000028010598,0.00028569455,0.0003615256,0.00011060751,0.000028235592,0.000014699315,0.0035881815],"genre_scores_gemma":[0.9992209,0.000048711383,0.00013060868,0.000032136282,0.0001096532,0.000003249749,0.000003890252,0.000008950093,0.00044191163],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989824,0.00021547759,0.00027499266,0.00007687015,0.00021382129,0.00023641583],"domain_scores_gemma":[0.9994942,0.000046875193,0.00017286325,0.0001877717,0.000010486686,0.000087818735],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000401717,0.00012698048,0.00020141053,0.000034845485,0.00022026552,0.000032269272,0.000379564,0.000019599756,0.0016943507],"category_scores_gemma":[0.000023005998,0.0000827492,0.000064268555,0.00011412679,0.00021863155,0.00020248184,0.00045370057,0.00025398398,0.00001808945],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025982456,0.00018928881,0.96401054,0.00001675737,0.000041154886,0.0000248128,0.0102451425,0.000037595335,0.009414565,0.00018693885,0.0147695495,0.000803814],"study_design_scores_gemma":[0.0005732087,0.00008942791,0.99496275,0.00006266085,0.000026592588,0.000014241595,0.0014416878,0.00015242324,0.000286657,0.0010774446,0.0011812599,0.00013165454],"about_ca_topic_score_codex":0.0027980893,"about_ca_topic_score_gemma":0.0073254462,"teacher_disagreement_score":0.030952184,"about_ca_system_score_codex":0.000083499785,"about_ca_system_score_gemma":0.000010344725,"threshold_uncertainty_score":0.9992182},"labels":[],"label_agreement":null},{"id":"W2080554049","doi":"10.1038/ismej.2014.250","title":"Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; McMaster University","funders":"Canadian Institutes of Health Research; Michael G. DeGroote Institute for Infectious Disease Research, McMaster University; Canada Research Chairs; McMaster University","keywords":"Biology; Microbiome; Respiratory tract; Respiratory system; Respiratory tract infections; Metagenomics; Young adult; Immunology; Microbiology; Zoology; Ecology; Genetics; Gene; Internal medicine","score_opus":0.030617971385192233,"score_gpt":0.2669763948138769,"score_spread":0.23635842342868468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080554049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819267,0.00055705046,0.00002902994,0.00071386877,0.00007795528,0.00013684599,0.000013217746,0.0000017525266,0.00027761696],"genre_scores_gemma":[0.9987107,0.000031698946,0.00017970541,0.00091438874,0.000091248156,0.0000022553902,0.000008359735,0.000010748139,0.000050891544],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99920684,0.00029193008,0.00013784568,0.000067953755,0.00013273561,0.00016269859],"domain_scores_gemma":[0.9995229,0.000008755646,0.00012517284,0.00022771889,0.000054296383,0.000061140905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046020528,0.000103354265,0.00012055758,0.000023177687,0.00009401827,0.000039439376,0.00024094434,0.000089548324,0.00000889565],"category_scores_gemma":[0.000015840502,0.000050249262,0.00004305074,0.000041264808,0.00019112969,0.0000053577387,0.000058391848,0.0002885511,3.0746673e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004025899,0.00009789844,0.052411895,0.000029377505,0.000032030468,0.00001046721,0.0022805668,0.00005742951,0.9421099,0.000048389367,0.0023936965,0.00012576913],"study_design_scores_gemma":[0.00688249,0.0019690543,0.5916292,0.00042177617,0.00009431359,0.00036354884,0.009167565,0.000023894361,0.34679866,0.00043425412,0.0417207,0.00049451867],"about_ca_topic_score_codex":0.000020105737,"about_ca_topic_score_gemma":0.0001735429,"teacher_disagreement_score":0.5953112,"about_ca_system_score_codex":0.000014131299,"about_ca_system_score_gemma":0.00027733654,"threshold_uncertainty_score":0.20491055},"labels":[],"label_agreement":null},{"id":"W2082950812","doi":"10.1038/ismej.2012.163","title":"Methanotrophic bacteria in oilsands tailings ponds of northern Alberta","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Syncrude (Canada); University of Calgary","funders":"","keywords":"Methanotroph; Methane monooxygenase; Biology; Tailings; Metagenomics; Environmental chemistry; Anoxic waters; 16S ribosomal RNA; Bacteria; Anaerobic oxidation of methane; Methane; Ecology; Gene; Biochemistry; Chemistry","score_opus":0.009916747925029007,"score_gpt":0.21979607780407773,"score_spread":0.20987932987904873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082950812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909568,0.00024514718,0.00003112131,0.00070295186,0.0002712406,0.000049024115,5.4750194e-7,0.000002648063,0.007740521],"genre_scores_gemma":[0.99792624,0.00009590916,0.00024004419,0.000097473196,0.00012783651,0.0000013782145,6.5535755e-7,0.000012191838,0.0014982958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99891835,0.00014568558,0.0003030124,0.0000781552,0.00023054589,0.0003242337],"domain_scores_gemma":[0.99943817,0.00007810055,0.00018649403,0.000170283,0.0000062840236,0.00012065308],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010013666,0.00010338469,0.00015848939,0.00003721149,0.00008419036,0.000015327383,0.0002886058,0.00006155773,0.0044626743],"category_scores_gemma":[0.00003335303,0.000057876354,0.00007023396,0.00021471448,0.00010267082,0.00020061371,0.0001003461,0.0003667923,0.00021794075],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013835034,0.00038143928,0.34499276,0.000012883084,0.00009869648,0.000009223346,0.015688589,0.0054304325,0.624838,0.00019845038,0.00043720444,0.007773964],"study_design_scores_gemma":[0.005479815,0.0008924969,0.8440153,0.00028307227,0.00038565684,0.0017843111,0.0021297513,0.0052232975,0.08456055,0.015709734,0.03797523,0.0015607884],"about_ca_topic_score_codex":0.0005400687,"about_ca_topic_score_gemma":0.00015941133,"teacher_disagreement_score":0.5402774,"about_ca_system_score_codex":0.00006572642,"about_ca_system_score_gemma":0.000010086411,"threshold_uncertainty_score":0.9964474},"labels":[],"label_agreement":null},{"id":"W2090127580","doi":"10.1038/ismej.2007.65","title":"Stable-isotope probing implicates <i>Methylophaga</i> spp and novel <i>Gammaproteobacteria</i> in marine methanol and methylamine metabolism","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":196,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Environment Research Council; Natural Sciences and Engineering Research Council of Canada; Society for General Microbiology","keywords":"Biology; Stable-isotope probing; Gammaproteobacteria; Methylamine; Methanol dehydrogenase; Temperature gradient gel electrophoresis; 16S ribosomal RNA; Biochemistry; Bacteria; Gene; Microorganism; Genetics","score_opus":0.011182610881427753,"score_gpt":0.23060449669870234,"score_spread":0.2194218858172746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090127580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958125,0.00023343498,0.0008630098,0.0011861239,0.00011879871,0.00028692491,0.000004522703,0.000011824639,0.0014828597],"genre_scores_gemma":[0.9943733,0.00028251042,0.0040003587,0.0009736346,0.00009795046,0.0000073283672,0.0000036733782,0.00001657879,0.00024465055],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986079,0.00027600402,0.00036548628,0.00019978295,0.000100430734,0.00045040096],"domain_scores_gemma":[0.99914294,0.00031382163,0.00018208302,0.0002338604,0.000012135922,0.00011512803],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0030006205,0.00018500225,0.00029976264,0.000068217334,0.00037382013,0.000051021987,0.0003617871,0.00011356866,0.00092025],"category_scores_gemma":[0.0000621303,0.00012616352,0.00003640966,0.0002273401,0.00036560334,0.00024100226,0.0007566237,0.0007992552,0.000021841895],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010506723,0.00007061954,0.004552092,0.000006206172,0.00002488286,0.0000069672005,0.0007203729,0.000030172783,0.9868737,0.00013246275,0.00017670826,0.007300747],"study_design_scores_gemma":[0.0026111456,0.00024800707,0.6736327,0.000027115255,0.000094876195,0.0015520658,0.00038702722,0.00006963213,0.26795802,0.01978463,0.03310774,0.00052703725],"about_ca_topic_score_codex":0.00047894914,"about_ca_topic_score_gemma":0.0009680339,"teacher_disagreement_score":0.7189157,"about_ca_system_score_codex":0.00004940779,"about_ca_system_score_gemma":0.000013083865,"threshold_uncertainty_score":0.999993},"labels":[],"label_agreement":null},{"id":"W2091333662","doi":"10.1038/ismej.2011.188","title":"454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1148,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Acidobacteria; Pyrosequencing; UniFrac; Verrucomicrobia; Incertae sedis; Euryarchaeota; 16S ribosomal RNA; Operational taxonomic unit; Ribosomal RNA; Taxon; Ecology; Zoology; Actinobacteria; Bacteria; Genetics; Gene","score_opus":0.04983419426463948,"score_gpt":0.2240237051840094,"score_spread":0.17418951091936993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091333662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970933,0.0000061872984,0.000010522002,0.000058633224,0.00026874113,0.000069280184,0.00003574213,0.0000072083453,0.0024503723],"genre_scores_gemma":[0.9995115,0.000049375667,0.00013697245,0.00009205832,0.00006407641,4.7163547e-7,0.000010657927,0.0000042396714,0.00013069349],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99912,0.0003886672,0.00016285008,0.00008314926,0.00007032339,0.0001749845],"domain_scores_gemma":[0.99943984,0.00010179648,0.00019118424,0.0002058846,0.000005543527,0.000055734767],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000265082,0.00009403753,0.00017204841,0.000014833525,0.0005501201,0.0000058886353,0.00040913912,0.00007705685,0.019836873],"category_scores_gemma":[0.000012825364,0.000060698254,0.00006277952,0.00003840618,0.00019000321,0.00011466515,0.0005365743,0.00023662424,0.00013071619],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026215345,0.00010466437,0.020825693,6.1851546e-7,0.00006476889,0.000010424729,0.007918592,0.000016738408,0.96859974,0.000004486362,0.0016518377,0.0005402725],"study_design_scores_gemma":[0.0012805808,0.0005993064,0.70978075,0.000021881791,0.00008345873,0.0000924281,0.0005964742,0.000006282529,0.27517322,0.011294718,0.0008802581,0.00019067722],"about_ca_topic_score_codex":0.0045353035,"about_ca_topic_score_gemma":0.0010097445,"teacher_disagreement_score":0.69342655,"about_ca_system_score_codex":0.00014126429,"about_ca_system_score_gemma":0.000012520338,"threshold_uncertainty_score":0.98105913},"labels":[],"label_agreement":null},{"id":"W2092532531","doi":"10.1038/ismej.2015.24","title":"Polar freshwater cyanophage S-EIV1 represents a new widespread evolutionary lineage of phages","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Center for Northern Studies; Canadian Institute for Advanced Research; University of British Columbia","funders":"Natural Resources Canada; ArcticNet; Fonds Québécois de la Recherche sur la Nature et les Technologies; Parks Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Genome; ORFS; Fosmid; Genetics; Gene; Synteny; Horizontal gene transfer; Synechococcus; Lineage (genetic); Open reading frame; Evolutionary biology; Cyanobacteria; Peptide sequence; Bacteria","score_opus":0.02509232797407911,"score_gpt":0.258312576983426,"score_spread":0.2332202490093469,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092532531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907676,0.00038399856,0.00074784126,0.0021741837,0.0008683697,0.00011887375,0.000033032953,0.000020034662,0.0048860833],"genre_scores_gemma":[0.97948986,0.00006703994,0.0023885064,0.00030955885,0.00042710293,0.0000012771773,0.000004432728,0.000016263692,0.01729597],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989604,0.000109920205,0.00030113122,0.00013368278,0.00026433147,0.00023057104],"domain_scores_gemma":[0.99925554,0.000043766428,0.0001917532,0.00027557774,0.00002415799,0.00020923317],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003373741,0.000115859206,0.00013821076,0.00003410319,0.00016244389,0.00005389642,0.00040196627,0.000050313498,0.005076832],"category_scores_gemma":[0.00006620664,0.000074198026,0.00011180387,0.00011940117,0.00013794212,0.00045111036,0.00022917765,0.00032180577,0.0006156394],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007735678,0.0001283901,0.0036218378,0.0000026127786,0.000049908544,0.000036364607,0.0014169755,0.00062932004,0.6263498,0.000008522206,0.3660514,0.0016275018],"study_design_scores_gemma":[0.0027127485,0.00053420576,0.18064237,0.00018256388,0.0001990462,0.003914964,0.0010285411,0.0010554707,0.23399903,0.003018373,0.5721403,0.000572407],"about_ca_topic_score_codex":0.0015046023,"about_ca_topic_score_gemma":0.00016987471,"teacher_disagreement_score":0.39235076,"about_ca_system_score_codex":0.000119596116,"about_ca_system_score_gemma":0.000042516796,"threshold_uncertainty_score":0.9958327},"labels":[],"label_agreement":null},{"id":"W2100348678","doi":"10.1038/ismej.2013.56","title":"Effects of environmental variation and spatial distance on <i>Bacteria</i>, <i>Archaea</i> and viruses in sub-polar and arctic waters","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"Fisheries and Oceans Canada; Natural Sciences and Engineering Research Council of Canada; Universität Wien; Austrian Science Fund; Tula Foundation","keywords":"Biology; Biological dispersal; Archipelago; Bay; Arctic; Ecology; Archaea; Metacommunity; Oceanography; Population; Bacteria","score_opus":0.002913599317915328,"score_gpt":0.17646877302953864,"score_spread":0.17355517371162332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100348678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99913,0.00010530985,0.00012500121,0.00036657165,0.00009058704,0.00015496147,0.000009438566,0.0000022394868,0.000015892996],"genre_scores_gemma":[0.9986437,0.000980661,0.00006844247,0.00023954199,0.00003124465,0.0000040834525,7.755868e-7,0.000006902327,0.000024643723],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99946326,0.00007627834,0.00014642975,0.00010800266,0.00007910726,0.00012689631],"domain_scores_gemma":[0.9997138,0.00007948877,0.00008831453,0.00005966095,0.000001519238,0.000057227327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000112825226,0.00008691531,0.000096979245,0.000021045695,0.000110167246,0.000055439275,0.000055569668,0.00002710539,0.00015030218],"category_scores_gemma":[0.000009261756,0.000058126065,0.000015304631,0.000023490484,0.00018847352,0.00026397404,0.00007850132,0.00016191669,0.00001591189],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003030269,0.0000457212,0.010367849,0.000009888071,0.0000073904635,0.0000023464117,0.0011289548,0.000004534635,0.9820646,0.0000021835092,0.000044591416,0.0062916516],"study_design_scores_gemma":[0.00037240965,0.00011379724,0.9714887,0.000042793672,0.000014302656,0.0000916383,0.00003992005,0.00005370746,0.027111975,0.00018598197,0.00041784352,0.00006692397],"about_ca_topic_score_codex":0.0018025219,"about_ca_topic_score_gemma":0.00015669665,"teacher_disagreement_score":0.96112084,"about_ca_system_score_codex":0.000051662675,"about_ca_system_score_gemma":0.0000018387001,"threshold_uncertainty_score":0.2724886},"labels":[],"label_agreement":null},{"id":"W2102254747","doi":"10.1038/ismej.2010.40","title":"Complex array of endobionts in <i>Petalomonas sphagnophila</i>, a large heterotrophic euglenid protist from <i>Sphagnum</i>-dominated peatlands","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Japan Society for the Promotion of Science; Nova Scotia Health Research Foundation; Dalhousie University; Canadian Institutes of Health Research; Tula Foundation; Natural Sciences and Engineering Research Council of Canada; Johns Hopkins University; Canadian Institute for Advanced Research","keywords":"Biology; Protist; Ribosomal DNA; 16S ribosomal RNA; Botany; Flagellate; Proteobacteria; Obligate; Sphagnum; Phylogenetics; Ecology; Bacteria; Peat; Genetics; Gene","score_opus":0.008835160204048276,"score_gpt":0.22878411973720944,"score_spread":0.21994895953316115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102254747","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99744415,0.00033719192,0.0002900026,0.00053233985,0.00033701764,0.00029337857,0.00020381092,0.0000055501973,0.00055656314],"genre_scores_gemma":[0.99824244,0.00009599658,0.0005377076,0.00049632223,0.00033821238,0.000009457442,0.00015797268,0.000016860424,0.000105021914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874073,0.00015582812,0.0003331852,0.0002239787,0.00021548013,0.00033081346],"domain_scores_gemma":[0.9991821,0.00002311492,0.00023542176,0.0003530183,0.00009717377,0.00010915911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042899948,0.00018336084,0.00024331335,0.000053065356,0.00018853837,0.000037101316,0.00057609024,0.00014503504,0.00018276364],"category_scores_gemma":[0.00004074173,0.00013830578,0.0001523531,0.000102137725,0.00015624166,0.000009978985,0.00011164796,0.0005739324,0.000013924045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002909465,0.00018617543,0.026127826,0.000007990053,0.0000714971,0.000030307157,0.0001668732,0.000008984032,0.97155,0.000029995483,0.0012289967,0.00030042438],"study_design_scores_gemma":[0.0062351734,0.00074427755,0.20141968,0.00006401367,0.00007778095,0.000509515,0.0001727261,0.000061564264,0.75710094,0.0013246115,0.03181918,0.00047052628],"about_ca_topic_score_codex":0.00006371391,"about_ca_topic_score_gemma":0.00025233324,"teacher_disagreement_score":0.21444903,"about_ca_system_score_codex":0.000010555796,"about_ca_system_score_gemma":0.00006901387,"threshold_uncertainty_score":0.56399465},"labels":[],"label_agreement":null},{"id":"W2105807526","doi":"10.1038/ismej.2010.69","title":"High bicarbonate assimilation in the dark by Arctic bacteria","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":198,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministerio de Ciencia e Innovación; Vetenskapsrådet; Dalhousie University","keywords":"Gammaproteobacteria; Biology; Bicarbonate; Biochemistry; Heterotroph; Microbiology; Bacteria; 16S ribosomal RNA; Gene","score_opus":0.005839644134896029,"score_gpt":0.210976751634039,"score_spread":0.205137107499143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105807526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908175,0.0000042457973,0.00001072934,0.006920658,0.00034376973,0.000053073447,0.0000018395579,0.0000032425976,0.0018449735],"genre_scores_gemma":[0.9981382,0.000013519563,0.000095550255,0.0015720298,0.00007611577,0.000001634223,0.0000046434834,0.0000034206635,0.00009488528],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99917346,0.00043392935,0.000121330704,0.00005376194,0.00007156076,0.00014598097],"domain_scores_gemma":[0.99952877,0.0001718399,0.000077547,0.00019621161,0.0000032331568,0.000022402719],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00096373813,0.000057259786,0.00006437945,0.000011190209,0.0003244059,0.00002825717,0.0005076271,0.000059164962,0.0060185674],"category_scores_gemma":[0.000035287576,0.00002995622,0.000024764213,0.00007933854,0.00018601095,0.000084062136,0.000083297564,0.0009878607,0.00012723677],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004432503,0.00010020134,0.01308034,0.0000010007919,0.000010236527,0.0000036015797,0.0020865095,0.00022269363,0.9364379,0.0002746263,0.046202667,0.0015359089],"study_design_scores_gemma":[0.00029420466,0.00006862651,0.9417883,0.0000032806863,0.000011319172,0.00017753009,0.000097328106,0.0000952611,0.00068700686,0.03325753,0.023432022,0.00008759891],"about_ca_topic_score_codex":0.00024854168,"about_ca_topic_score_gemma":0.0013248384,"teacher_disagreement_score":0.9357509,"about_ca_system_score_codex":0.00002432609,"about_ca_system_score_gemma":0.000006757506,"threshold_uncertainty_score":0.9948901},"labels":[],"label_agreement":null},{"id":"W2110594762","doi":"10.1038/ismej.2011.28","title":"Reversal in competitive dominance of a toxic versus non-toxic cyanobacterium in response to rising CO2","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal ecosystems","field":"Earth and Planetary Sciences","cited_by":214,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of British Columbia","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Dominance (genetics); Chemostat; Microcystin; Microcystis aeruginosa; Competition (biology); Algal bloom; Biology; Phytoplankton; Algae; Microcystis; Ecology; Environmental chemistry; Cyanobacteria; Chemistry; Bacteria; Nutrient; Biochemistry","score_opus":0.020456800131865495,"score_gpt":0.22013417836855403,"score_spread":0.19967737823668855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110594762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98817897,0.00004534738,0.000033350883,0.00022378955,0.00044028054,0.000115356714,0.000015398762,0.0000029116125,0.010944597],"genre_scores_gemma":[0.9994347,0.000025701787,0.00020123276,0.00007367812,0.00006997643,5.2128036e-7,8.938498e-7,0.000002643193,0.0001906705],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988589,0.00028896338,0.00032527588,0.000106946856,0.00017513572,0.0002447673],"domain_scores_gemma":[0.9994056,0.00020908481,0.00014226713,0.00013205239,0.00002980937,0.00008119241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011623397,0.000092444374,0.00020037907,0.00015132678,0.000058761216,0.000025109131,0.0002724412,0.000036439633,0.0007371833],"category_scores_gemma":[0.00008357121,0.00006496935,0.000043904838,0.00029175653,0.0000409584,0.00015893049,0.000028227914,0.0002619746,0.00006871348],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.052371625,0.00021121166,0.87478924,0.00006918914,0.000075418386,0.00089831225,0.030175926,0.0018374211,0.009000704,0.00013272681,0.00068482105,0.029753402],"study_design_scores_gemma":[0.001150581,0.00056355016,0.99389845,0.00015795944,0.000005740689,0.00009723835,0.0017321839,0.0005342388,0.0007910985,0.00011168402,0.0008512877,0.00010597452],"about_ca_topic_score_codex":0.0033822153,"about_ca_topic_score_gemma":0.02110783,"teacher_disagreement_score":0.11910922,"about_ca_system_score_codex":0.00001568975,"about_ca_system_score_gemma":0.00009597103,"threshold_uncertainty_score":0.9967544},"labels":[],"label_agreement":null},{"id":"W2113051120","doi":"10.1038/ismej.2007.86","title":"Organic substrate quality as the link between bacterioplankton carbon demand and growth efficiency in a temperate salt-marsh estuary","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal ecosystems","field":"Earth and Planetary Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"National Estuarine Research Reserve System","keywords":"Bacterioplankton; Dissolved organic carbon; Nutrient; Environmental chemistry; Biology; Lability; Estuary; Carbon fibers; Organic matter; Carbon cycle; Temperate climate; Substrate (aquarium); Salt marsh; Ecology; Phytoplankton; Chemistry; Biochemistry; Ecosystem","score_opus":0.013310053294214738,"score_gpt":0.22691553100925918,"score_spread":0.21360547771504446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113051120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926816,0.00048694378,0.000028375545,0.0017865809,0.00020731617,0.000146266,0.000007277001,0.0000128912025,0.0046427236],"genre_scores_gemma":[0.99871343,0.00021313767,0.00000746371,0.00017968693,0.0007447561,2.5459366e-7,0.0000064318483,0.00000451336,0.00013029674],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983142,0.0003422908,0.0004840275,0.00016221315,0.00030337885,0.000393874],"domain_scores_gemma":[0.99905825,0.00040258866,0.00018848028,0.00016305163,0.00003987646,0.00014775436],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0042943927,0.00015279594,0.00022228812,0.00007288316,0.00035152034,0.00020645118,0.0003365288,0.00007176667,0.00023735462],"category_scores_gemma":[0.00006580248,0.000078514466,0.000041677125,0.00028289796,0.00008798789,0.00013802586,0.000031590884,0.0005867501,0.00002780112],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054015585,0.000004780039,0.9854896,0.000015498863,0.000018100192,0.000037337923,0.0010827605,0.000022207565,0.0002522386,0.00002619849,0.0000086852715,0.012988545],"study_design_scores_gemma":[0.00030315176,0.0001486268,0.99616516,0.000029832265,0.000018028299,0.00035437202,0.00051475206,0.000328245,0.00025326776,0.0015259974,0.000230532,0.0001280095],"about_ca_topic_score_codex":0.0075367833,"about_ca_topic_score_gemma":0.014783562,"teacher_disagreement_score":0.012860536,"about_ca_system_score_codex":0.000008488192,"about_ca_system_score_gemma":0.000105476734,"threshold_uncertainty_score":0.99907213},"labels":[],"label_agreement":null},{"id":"W2116535026","doi":"10.1038/ismej.2007.9","title":"Microbial ecology of biological invasions","year":2007,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":415,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Koninklijke Nederlandse Akademie van Wetenschappen; Nederlands Instituut voor Ecologie","keywords":"Decomposer; Biology; Ecosystem; Ecology; Trophic level; Microbial population biology; Invasive species; Microbial ecology","score_opus":0.17434118608520383,"score_gpt":0.31257520032430103,"score_spread":0.1382340142390972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116535026","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001513859,0.99493456,0.000002902356,0.00025260952,0.0010196425,0.00020308116,0.0006817053,0.0000124863545,0.0013791794],"genre_scores_gemma":[0.00011778557,0.99790967,0.000033692144,0.00011510133,0.0012482296,0.0000030083656,0.0002571433,9.747895e-7,0.00031439168],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985513,0.00035097895,0.00058546785,0.00013281526,0.00011354224,0.00026589233],"domain_scores_gemma":[0.99472445,0.0045806062,0.0004893962,0.000054505635,0.000059673945,0.00009139254],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006794417,0.0001910535,0.0006975316,0.000030553212,0.0002991797,0.000036000267,0.00060270855,0.00032125635,0.009462592],"category_scores_gemma":[0.00019697016,0.00004240464,0.00060122466,0.00025209066,0.00002843749,0.000031838077,0.00009730273,0.00087457255,0.0005372739],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001062699,0.00006654236,0.000077697485,0.0000747356,0.00007837687,0.000018393503,0.00001629255,1.9767465e-7,0.0004962306,0.00022855107,0.027909642,0.9710227],"study_design_scores_gemma":[0.000011185515,0.00014972004,0.000054896656,0.0008963096,0.00012276167,0.0028334602,0.000027410631,2.3669737e-7,0.0000058865094,0.00025408226,0.995537,0.00010704368],"about_ca_topic_score_codex":0.000048618735,"about_ca_topic_score_gemma":0.00007104649,"teacher_disagreement_score":0.9709157,"about_ca_system_score_codex":0.000028243741,"about_ca_system_score_gemma":0.00004165691,"threshold_uncertainty_score":0.9914429},"labels":[],"label_agreement":null},{"id":"W2117068420","doi":"10.1038/ismej.2009.56","title":"Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies","year":2009,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Chemical, Bioengineering, Environmental, and Transport Systems; National Science Foundation; Vetenskapsrådet; Uppsala Universitet; Svenska Forskningsrådet Formas; Global Lake Ecological Observatory Network","keywords":"Biology; Black box; Microbial ecology; Ecology; Geomicrobiology; Computational biology; Remote sensing; Environmental biotechnology; Bacteria; Artificial intelligence; Computer science; Genetics","score_opus":0.019785367346309753,"score_gpt":0.27689264107882455,"score_spread":0.2571072737325148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117068420","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.050937284,0.8672402,0.00015946232,0.07433575,0.002260431,0.0032117476,0.0003357606,0.00051731715,0.0010020316],"genre_scores_gemma":[0.016563296,0.98154855,0.0001743055,0.0011371155,0.00011799993,0.0000044073927,0.000095843665,0.000027304306,0.00033117822],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964009,0.0021475917,0.0006979439,0.00018891474,0.00015126326,0.00041339456],"domain_scores_gemma":[0.99756527,0.0006667699,0.0011060933,0.0006065454,0.000026978985,0.000028320137],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0013350203,0.00031097588,0.0007190726,0.000054877346,0.001359835,0.000046127458,0.0015644128,0.00044013787,0.0006427204],"category_scores_gemma":[0.00011149597,0.00014489896,0.00025109848,0.0003375095,0.002049524,0.00006391725,0.00048126944,0.0017667444,0.00008731699],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003886222,0.0001436106,0.000009392902,0.00017410159,0.0003897923,0.00000888017,0.0014494923,0.0009481693,0.0037438932,0.00015815819,0.758666,0.2342697],"study_design_scores_gemma":[0.0003149332,0.0002506956,0.00034513714,0.0003901853,0.0007673009,0.0010193723,0.0005600225,0.00014326662,0.00019390263,0.0038047342,0.9918922,0.0003182198],"about_ca_topic_score_codex":0.00036622895,"about_ca_topic_score_gemma":0.001435691,"teacher_disagreement_score":0.23395146,"about_ca_system_score_codex":0.00032842305,"about_ca_system_score_gemma":0.00011201397,"threshold_uncertainty_score":0.9999403},"labels":[],"label_agreement":null},{"id":"W2118194113","doi":"10.1038/ismej.2010.121","title":"Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Tula Foundation; National Science Foundation","keywords":"Biology; Proteobacteria; Commensalism; Epibiont; Phylogenetic tree; Ecology; Clade; Phylogenetics; Host (biology); Symbiosis; Candidatus; Evolutionary biology; Zoology; Bacteria; 16S ribosomal RNA; Gene; Paleontology; Genetics","score_opus":0.023444400847837922,"score_gpt":0.2929856075066647,"score_spread":0.26954120665882675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118194113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998158,0.000013672817,0.00013571452,0.0009407825,0.00033073523,0.00020330353,0.000008083375,0.0000045307506,0.0002051749],"genre_scores_gemma":[0.9994216,0.000049253827,0.00022550675,0.00018131311,0.00005006027,0.0000023543546,0.0000036072888,0.00000561434,0.000060693448],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915975,0.0002281423,0.00023512857,0.000108134926,0.0000866945,0.00018215753],"domain_scores_gemma":[0.99929124,0.0002782965,0.00016888297,0.00020094315,0.0000138263385,0.00004682881],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010566785,0.000087612665,0.0001489804,0.000040769977,0.00025293315,0.000017913277,0.00031868703,0.00008594177,0.0015963803],"category_scores_gemma":[0.00016355202,0.000064388005,0.000041206105,0.00008301922,0.00029521604,0.00025245434,0.0001654674,0.0004819312,0.000035126228],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025029256,0.00014772099,0.12103314,0.000011902295,0.000016433038,0.0000012394304,0.00032932885,0.000016037844,0.8763984,0.00055937277,0.000939501,0.00029662903],"study_design_scores_gemma":[0.00050873554,0.00033643612,0.9875556,0.000041489107,0.000018613197,0.000053813048,0.000058317928,0.00011170905,0.0055476553,0.005525111,0.00016485734,0.00007765916],"about_ca_topic_score_codex":0.00046145698,"about_ca_topic_score_gemma":0.0038447294,"teacher_disagreement_score":0.87085074,"about_ca_system_score_codex":0.00007815772,"about_ca_system_score_gemma":0.000015323552,"threshold_uncertainty_score":0.9993163},"labels":[],"label_agreement":null},{"id":"W2122136925","doi":"10.1038/ismej.2012.138","title":"Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and viruses","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Vlaamse regering; Natural Sciences and Engineering Research Council of Canada; Fonds Wetenschappelijk Onderzoek; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Tula Foundation","keywords":"Metacommunity; Biological dispersal; Biology; Ecology; Plankton; Biodiversity; Microbial ecology; Bacterioplankton; Zooplankton; Community structure; Beta diversity; Spatial ecology; Phytoplankton; Bacteria; Nutrient; Population","score_opus":0.011588733786877232,"score_gpt":0.2501188061710169,"score_spread":0.23853007238413967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122136925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995319,0.0001282738,0.000017610777,0.000050417377,0.00014547346,0.000063974556,0.000019566263,0.0000021877954,0.000040549116],"genre_scores_gemma":[0.9996742,0.00008770654,0.00011196684,0.00008447744,0.000030291305,3.3116302e-7,2.978206e-7,0.0000042554284,0.000006444523],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994783,0.0001863691,0.000115021634,0.00004588123,0.00006415683,0.00011029323],"domain_scores_gemma":[0.9995185,0.00017578872,0.00013930148,0.00010423249,0.000004763852,0.000057407127],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018498758,0.00007259406,0.00013192225,0.000013039739,0.00014019111,0.00001582466,0.00008954363,0.00003200365,0.00027349504],"category_scores_gemma":[0.000023729126,0.000043849177,0.00003199024,0.000030730545,0.000144197,0.00018501143,0.000113237664,0.00021807336,0.0000019469126],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034262037,0.000055696237,0.020460341,0.000010582707,0.00003137572,2.3662979e-7,0.0005382664,0.0000036267638,0.9773261,0.0000074120317,0.000038667727,0.0014934557],"study_design_scores_gemma":[0.00012353928,0.00006715589,0.6185515,0.00001276439,0.000029663062,0.000092522474,0.000025166666,0.0000028480742,0.38081172,0.000052178508,0.00020105246,0.000029898985],"about_ca_topic_score_codex":0.00034237106,"about_ca_topic_score_gemma":0.00014572276,"teacher_disagreement_score":0.5980911,"about_ca_system_score_codex":0.000020725829,"about_ca_system_score_gemma":0.0000028284253,"threshold_uncertainty_score":0.2994579},"labels":[],"label_agreement":null},{"id":"W2129737554","doi":"10.1038/ismej.2007.55","title":"Witnessing the last supper of uncultivated microbial cells with Raman-FISH","year":2007,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Isotope Analysis in Ecology","field":"Environmental Science","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Environment Research Council","keywords":"Supper; Biology; Fish <Actinopterygii>; Zoology; Fishery; Archaeology","score_opus":0.02331272080480972,"score_gpt":0.281445753943025,"score_spread":0.2581330331382153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129737554","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.020025734,0.9552359,0.0016726177,0.0014864819,0.0018200441,0.0021317296,0.000043977765,0.00005538962,0.01752811],"genre_scores_gemma":[0.0015425328,0.99469423,0.00057513424,0.0004940056,0.00044671973,0.0000069075613,0.0000077385075,0.00007096567,0.0021617396],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99764585,0.0005179479,0.00071260834,0.00022144911,0.00045585103,0.00044626114],"domain_scores_gemma":[0.99814636,0.00029729665,0.0010037038,0.00045678992,0.000028497587,0.00006735271],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017162267,0.0003209887,0.00089405593,0.000079274294,0.00044592647,0.000084889,0.0012317162,0.00018987623,0.0023180323],"category_scores_gemma":[0.000026790618,0.00013038777,0.0003762481,0.00058327994,0.00086885935,0.00011573231,0.00028639458,0.0011598273,0.000245583],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000548375,0.00029764973,0.0005925065,0.00060566014,0.0012774429,0.0001565333,0.0013123885,0.0023734511,0.001008406,0.00002683181,0.040443283,0.951851],"study_design_scores_gemma":[0.00021203035,0.00006683508,0.00019679277,0.0009931062,0.0009980658,0.0012652818,0.00010581728,0.000011374423,0.00022585507,0.000020723293,0.99568,0.00022411978],"about_ca_topic_score_codex":0.000039688646,"about_ca_topic_score_gemma":0.00026921713,"teacher_disagreement_score":0.95523673,"about_ca_system_score_codex":0.00027948702,"about_ca_system_score_gemma":0.000099467696,"threshold_uncertainty_score":0.998594},"labels":[],"label_agreement":null},{"id":"W2131925745","doi":"10.1038/ismej.2012.108","title":"Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Joint Genome Institute; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research; U.S. Department of Energy; National Cancer Institute; National Science Foundation","keywords":"Biology; 16S ribosomal RNA; Subarctic climate; Library; Ribosomal RNA; Population; Zoology; Ecology; Phylogenetic tree; Bacteria; Genetics; Gene","score_opus":0.009765499853740086,"score_gpt":0.19697654165278844,"score_spread":0.18721104179904835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131925745","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99947315,0.000007984595,0.0000024811397,0.0002769339,0.00007252397,0.000046328507,0.0000019766037,0.0000011018082,0.00011749958],"genre_scores_gemma":[0.99980575,0.000012665634,0.000026216738,0.00010464155,0.000038026676,5.2017796e-8,0.000003967632,0.0000015702839,0.000007116344],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999365,0.000356959,0.00008320608,0.000030989715,0.000052448515,0.00011143864],"domain_scores_gemma":[0.9997466,0.00005652637,0.000071998584,0.000100812555,0.000002035488,0.000021990427],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00040580725,0.000043676926,0.000065053006,0.00001180111,0.00073281926,0.0000043300806,0.00019435628,0.0000322441,0.0013475339],"category_scores_gemma":[0.000008527897,0.0000236642,0.000016757422,0.00005555355,0.000114859635,0.00011528929,0.0005680929,0.0002728477,0.0000027128683],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026519456,0.000025505913,0.9901842,0.0000016161829,0.0000037292914,2.7034824e-7,0.005774081,0.000011209093,0.0035776037,0.00005426481,0.000072392126,0.00026864142],"study_design_scores_gemma":[0.00010675253,0.000032522443,0.9958981,0.0000015971102,0.000009229366,0.000110016066,0.0003649534,0.000010281065,0.0000114067525,0.0033369837,0.00009113631,0.000026994876],"about_ca_topic_score_codex":0.0007132608,"about_ca_topic_score_gemma":0.0015755491,"teacher_disagreement_score":0.00571396,"about_ca_system_score_codex":0.000021854654,"about_ca_system_score_gemma":0.0000011084173,"threshold_uncertainty_score":0.99956536},"labels":[],"label_agreement":null},{"id":"W2134849516","doi":"10.1038/ismej.2009.6","title":"A reanalysis of phospholipid fatty acids as ecological biomarkers for methanotrophic bacteria","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"European Social Fund; Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Biology; Microbial ecology; Stable-isotope probing; Microbial population biology; Bacteria; Phylogenetic tree; 16S ribosomal RNA; Methanotroph; Fatty acid; Anaerobic oxidation of methane; Microorganism; Ecology; Botany; Methane; Biochemistry; Gene; Genetics","score_opus":0.013272076024383716,"score_gpt":0.2501667282015003,"score_spread":0.2368946521771166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134849516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99179196,0.000121515535,0.0008185518,0.0026287627,0.0001804793,0.00015451356,0.000004197451,0.000009587866,0.004290427],"genre_scores_gemma":[0.9943571,0.00021792256,0.0043568667,0.0004562746,0.00009505971,0.0000033895756,0.000002181098,0.000007784661,0.000503441],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99872696,0.00016522684,0.0003734506,0.00015989196,0.00028145465,0.00029299912],"domain_scores_gemma":[0.99923354,0.0001088834,0.00028420027,0.00022692891,0.000016484279,0.00012998238],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012039109,0.0001339496,0.0002537876,0.000038417817,0.00022472463,0.00003476481,0.00040678063,0.000094302464,0.0062143034],"category_scores_gemma":[0.00008304645,0.000070828,0.00025259095,0.00027947561,0.0001523729,0.000095780684,0.000058548358,0.00023731857,0.00008351129],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00077817956,0.0004980224,0.0033011518,0.000007933593,0.00072776,0.000023739392,0.0012818577,0.006136985,0.93402857,0.00047013207,0.0037351002,0.049010564],"study_design_scores_gemma":[0.0054143476,0.0061347005,0.5235191,0.00011177492,0.002243264,0.0011047418,0.0010396696,0.01288955,0.21468474,0.18774503,0.04366665,0.001446416],"about_ca_topic_score_codex":0.000025787578,"about_ca_topic_score_gemma":0.000002081058,"teacher_disagreement_score":0.71934384,"about_ca_system_score_codex":0.000082303704,"about_ca_system_score_gemma":0.000015668456,"threshold_uncertainty_score":0.9946942},"labels":[],"label_agreement":null},{"id":"W2134972829","doi":"10.1038/ismej.2007.75","title":"The geomicrobiology of gold","year":2007,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":229,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Archaea; Biogeochemical cycle; Bacteria; Environmental chemistry; Geomicrobiology; Sulfate-reducing bacteria; Hot spring; Mineralization (soil science); Biology; Biogeochemistry; Microorganism; Chemistry; Ecology; Environmental biotechnology; Soil water","score_opus":0.06256322082647085,"score_gpt":0.33188065154340135,"score_spread":0.2693174307169305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134972829","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000116078945,0.99364555,0.00039318376,0.000030384024,0.001546685,0.00007871765,0.000003833268,0.00001790239,0.004272158],"genre_scores_gemma":[0.000027280663,0.9982041,0.00004968408,0.000017613775,0.00057243736,9.559717e-7,0.0000017212548,0.000021074324,0.0011051185],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99905837,0.00012803658,0.0005042587,0.000046914793,0.000075229145,0.00018720803],"domain_scores_gemma":[0.99924386,0.00029973267,0.00022882101,0.00017256268,0.000019467816,0.000035567682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014070292,0.00015033576,0.00045600682,0.000059517715,0.00011444706,0.000037455055,0.0004072579,0.00014247734,0.00006421588],"category_scores_gemma":[0.000029102182,0.00005950222,0.0003512942,0.00008700154,0.00005066189,0.000022578424,0.00002616715,0.0012115365,0.00006951796],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[7.706457e-7,0.0000021828362,4.3275538e-8,0.00030858943,0.00012437202,0.0000015673404,0.000011207452,0.000024299074,0.000035060133,0.00012201371,0.0038212931,0.9955486],"study_design_scores_gemma":[0.000028500117,0.00000770068,9.1584013e-7,0.0007158777,0.000120949684,0.001128853,0.000012349424,0.000017456838,0.000008014343,0.000037147787,0.9978523,0.000069880596],"about_ca_topic_score_codex":0.0000017395595,"about_ca_topic_score_gemma":0.0000029318924,"teacher_disagreement_score":0.99547875,"about_ca_system_score_codex":0.000044833607,"about_ca_system_score_gemma":0.000032271182,"threshold_uncertainty_score":0.526359},"labels":[],"label_agreement":null},{"id":"W2135850335","doi":"10.1038/ismej.2013.36","title":"The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of <i>Burkholderia cenocepacia</i>","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Cystic Fibrosis Trust; Cystic Fibrosis Canada; European Cooperation in Science and Technology; Cystic Fibrosis Foundation Therapeutics","keywords":"Burkholderia cenocepacia; Persistence (discontinuity); Anoxic waters; Locus (genetics); Burkholderia cepacia complex; Biology; Microbiology; Ecology; Burkholderia; Genetics; Gene; Bacteria; Geology","score_opus":0.029841824738715945,"score_gpt":0.28890590597912325,"score_spread":0.2590640812404073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135850335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9785494,0.0025547065,0.005994982,0.011213528,0.00026637063,0.0011368801,0.000041473286,0.000012986852,0.00022962666],"genre_scores_gemma":[0.9975562,0.00043273886,0.00074563554,0.00011661857,0.00022145004,0.00003975453,0.00000208608,0.00002497079,0.000860563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981979,0.000087787375,0.00048817683,0.00013787698,0.0006681332,0.00042012578],"domain_scores_gemma":[0.9967306,0.0016444817,0.00041987182,0.00051107426,0.0005894732,0.000104482526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007008836,0.00015822347,0.0003198394,0.000056490444,0.00043952675,0.00010660639,0.00056561985,0.000047130474,0.00008097528],"category_scores_gemma":[0.0011969496,0.00006317707,0.00024872244,0.0003533364,0.0006670722,0.00028986429,0.00009199564,0.00042266137,0.0000040107057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007029639,0.00014898549,0.00006282997,0.000061475715,0.00024868088,0.0000012345567,0.00071036536,0.0001360363,0.99269634,0.0000921983,0.0031318495,0.0020070274],"study_design_scores_gemma":[0.009253276,0.0026027164,0.031575426,0.0013867086,0.000511075,0.0011345277,0.02565471,0.011510985,0.90693384,0.002106013,0.006921884,0.00040883548],"about_ca_topic_score_codex":0.00009952043,"about_ca_topic_score_gemma":0.000014271448,"teacher_disagreement_score":0.08576251,"about_ca_system_score_codex":0.000078493686,"about_ca_system_score_gemma":0.00028331278,"threshold_uncertainty_score":0.33805287},"labels":[],"label_agreement":null},{"id":"W2136626927","doi":"10.1038/ismej.2008.24","title":"<i>Escherichia coli</i>transcription factor YncC (McbR) regulates colanic acid and biofilm formation by repressing expression of periplasmic protein YbiM (McbA)","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Biomedical Imaging and Bioengineering; National Institutes of Health; Keio University","keywords":"Biology; Biofilm; Repressor; Periplasmic space; Overproduction; Transcription factor; Transcription (linguistics); Quorum sensing; Escherichia coli; Molecular biology; Microbiology; Gene; Biochemistry; Bacteria; Genetics","score_opus":0.011711458045803782,"score_gpt":0.21027780349601907,"score_spread":0.1985663454502153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136626927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99780595,0.00095981586,0.0004992411,0.0003201451,0.00013582101,0.00018995318,0.000022989325,0.0000089671,0.000057107536],"genre_scores_gemma":[0.9979693,0.0005039411,0.001031942,0.00010996227,0.00017271677,0.0000028430281,0.000029234832,0.000017933162,0.00016207637],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990221,0.00013213613,0.00032678797,0.00016147547,0.0001538833,0.00020360417],"domain_scores_gemma":[0.99935603,0.0000061421497,0.00029988433,0.00018705608,0.00007781334,0.00007309949],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019746034,0.00015060158,0.00016570334,0.000028775064,0.0003840723,0.000057917205,0.00011786845,0.0001527962,0.000019280891],"category_scores_gemma":[0.000027229105,0.00010586085,0.00007553522,0.000056132594,0.00012893125,0.000035974546,0.00004451843,0.00018163995,9.809512e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018387234,0.000023295252,0.00010844684,0.00001794392,0.000014934929,0.000001233023,0.00029595982,0.000004470015,0.9977116,0.0000018748601,0.00096761785,0.0006687437],"study_design_scores_gemma":[0.00053463463,0.00021435773,0.001829138,0.00009591633,0.000015374342,0.00026913293,0.00013651908,0.00009816531,0.9931547,0.000015850776,0.00350143,0.00013478786],"about_ca_topic_score_codex":0.000015812524,"about_ca_topic_score_gemma":0.0000027824392,"teacher_disagreement_score":0.0045569143,"about_ca_system_score_codex":0.000014852116,"about_ca_system_score_gemma":0.00004459618,"threshold_uncertainty_score":0.431688},"labels":[],"label_agreement":null},{"id":"W2146398613","doi":"10.1038/ismej.2008.54","title":"Indole cell signaling occurs primarily at low temperatures in <i>Escherichia coli</i>","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Army Research Office; Institute of Genetics; National Institute of Biomedical Imaging and Bioengineering; National Institutes of Health; Keio University","keywords":"Biology; Escherichia coli; Indole test; Microbiology; Escherichia coli Proteins; Cell; Biochemistry; Gene","score_opus":0.012262103342270453,"score_gpt":0.24584675913637885,"score_spread":0.2335846557941084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146398613","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99479353,0.0029859329,0.000046555644,0.00056641083,0.00013903415,0.00016161703,0.0000049175537,0.0000072273283,0.0012947532],"genre_scores_gemma":[0.99436784,0.001793266,0.00043235123,0.0010691432,0.0004651601,0.000013801009,0.0000055187797,0.000024749306,0.0018281854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851716,0.0002383178,0.0002647097,0.00020883643,0.00032707895,0.00044389555],"domain_scores_gemma":[0.99937475,0.000046365436,0.000118158336,0.00023090982,0.00011356165,0.00011627796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005540982,0.00018132542,0.00018832325,0.000047137888,0.0005365394,0.000046210243,0.00040930734,0.00010175739,0.00002927595],"category_scores_gemma":[0.000120131815,0.00012501344,0.00011273168,0.00018243192,0.00019662044,0.0000073917263,0.00028320638,0.0005818115,0.000014654789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015778773,0.000080651014,0.011899181,0.0000118657035,0.000040668154,0.000055669843,0.0003956399,0.00029803716,0.9731395,0.0000033038716,0.013884135,0.000033553726],"study_design_scores_gemma":[0.0022740013,0.0004782549,0.038970098,0.000058506335,0.00002262827,0.00043500174,0.0005247313,0.00009523559,0.92459345,0.000079708865,0.032000292,0.00046810397],"about_ca_topic_score_codex":0.000017640712,"about_ca_topic_score_gemma":0.000031456977,"teacher_disagreement_score":0.04854607,"about_ca_system_score_codex":0.00007007965,"about_ca_system_score_gemma":0.00027823492,"threshold_uncertainty_score":0.50979},"labels":[],"label_agreement":null},{"id":"W2151285072","doi":"10.1038/ismej.2009.13","title":"Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater <i>Actinobacteria</i>","year":2009,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Nova Scotia Health Research Foundation","keywords":"Actinobacteria; Biology; Metagenomics; Environmental DNA; Ecology; Gene; Botany; Biodiversity; Genetics; 16S ribosomal RNA","score_opus":0.04058561982530956,"score_gpt":0.29571585586290455,"score_spread":0.255130236037595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151285072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978612,0.000059808095,0.000020749065,0.0011531477,0.00027717097,0.00020524654,0.000063950894,0.000015253585,0.0003434556],"genre_scores_gemma":[0.9983413,0.00037207946,0.00015119063,0.00044743458,0.00020037635,0.000003577797,0.0000033051808,0.000017472556,0.00046323385],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99791175,0.00044203876,0.0003050932,0.00029041647,0.00047498837,0.00057571364],"domain_scores_gemma":[0.999234,0.00016852244,0.000115200855,0.00023821704,0.00004349025,0.00020054713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047634623,0.00020345235,0.00020574228,0.00015327359,0.00039855952,0.00043923565,0.00049869926,0.0000802575,0.00043220996],"category_scores_gemma":[0.00017432976,0.00012058558,0.00007241797,0.00023103946,0.0002461887,0.00059256493,0.00015047356,0.0006282713,0.000027378854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017183769,0.000075177646,0.019397411,0.0000026532534,0.0000055336777,0.00007970958,0.0010614216,0.000040794766,0.9756053,0.000008555702,0.0008991109,0.0026524654],"study_design_scores_gemma":[0.0010233507,0.00014426316,0.110568196,0.000034793084,0.000009219757,0.00022652598,0.000205416,0.00048462485,0.8819472,0.0008842235,0.0042650467,0.00020712495],"about_ca_topic_score_codex":0.00007698697,"about_ca_topic_score_gemma":0.00036359497,"teacher_disagreement_score":0.09365811,"about_ca_system_score_codex":0.000067604335,"about_ca_system_score_gemma":0.00004035205,"threshold_uncertainty_score":0.49173373},"labels":[],"label_agreement":null},{"id":"W2154218487","doi":"10.1038/ismej.2007.24","title":"Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":245,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"British Antarctic Survey; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Nederlands Instituut voor Ecologie; Koninklijke Nederlandse Akademie van Wetenschappen; Fonds Québécois de la Recherche sur la Nature et les Technologies; U.S. Department of Energy","keywords":"Biology; Nitrogen cycle; Ecology; Environmental DNA; Microbial ecology; Microbial population biology; Cycling; Transect; Abundance (ecology); Biodiversity; Nitrogen; Genetics","score_opus":0.024822015404223265,"score_gpt":0.29142758033531735,"score_spread":0.2666055649310941,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154218487","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983633,0.00022456632,0.0009345823,0.00019318056,0.000050665065,0.000039355884,0.0000052633636,0.000003756121,0.00018529294],"genre_scores_gemma":[0.99946725,0.0000901499,0.00025468768,0.000060348222,0.000085636704,5.0128904e-7,0.0000018860342,0.000004907117,0.000034648336],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998985,0.00009265326,0.00020163892,0.000116111536,0.00026071517,0.00034390864],"domain_scores_gemma":[0.99957067,0.00008880593,0.000080483434,0.000102960345,0.000010973741,0.00014608329],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017529008,0.00007105358,0.00014534369,0.00006782641,0.0003151933,0.000028107363,0.00015500485,0.000038698865,0.00068913953],"category_scores_gemma":[0.000018919782,0.000047551886,0.00008300264,0.00029478932,0.00026274077,0.00011985524,0.000046084024,0.00023222409,0.000005198717],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010508612,0.000041654686,0.8223022,0.0000016025666,0.00026471922,0.000012344728,0.0008847102,0.0016690271,0.17098498,0.0000026716507,0.000013180047,0.0037178178],"study_design_scores_gemma":[0.0002475278,0.00011919737,0.98943615,0.0000017545906,0.0001605782,0.00020133989,0.00036914638,0.0015892715,0.0073338063,0.00037640947,0.00010220179,0.00006264135],"about_ca_topic_score_codex":0.0007414496,"about_ca_topic_score_gemma":0.0043130917,"teacher_disagreement_score":0.16713393,"about_ca_system_score_codex":0.00007033758,"about_ca_system_score_gemma":0.000012904333,"threshold_uncertainty_score":0.75455946},"labels":[],"label_agreement":null},{"id":"W2154282828","doi":"10.1038/ismej.2010.80","title":"Survival of <i>Escherichia coli</i> in the environment: fundamental and public health aspects","year":2010,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":638,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Ecological niche; Context (archaeology); Escherichia coli; Virulence; Niche; Organism; Indigenous; Ecology; Habitat; Genetics; Gene","score_opus":0.05670669571385241,"score_gpt":0.33302449337448997,"score_spread":0.2763177976606376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154282828","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008188781,0.9883364,0.00001810081,0.0022435253,0.00014355885,0.00048792275,0.00002599539,0.0000016945971,0.0005540249],"genre_scores_gemma":[0.005001211,0.99410313,0.00007315472,0.00031758822,0.0003467581,0.00003204134,0.00001624512,0.000028474775,0.0000814191],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99727327,0.0011471927,0.00049511355,0.00022359964,0.00041337256,0.000447436],"domain_scores_gemma":[0.9988589,0.00011846957,0.00047433592,0.0003990482,0.00002675135,0.00012245946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026903206,0.0002669071,0.0006781652,0.000058080634,0.00026209437,0.000088456,0.00071608665,0.00017143943,0.000018946394],"category_scores_gemma":[0.00012802017,0.0001381733,0.00021362859,0.0001420359,0.0003851429,0.000004933685,0.00036021502,0.0012885857,0.0000033581105],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005162259,0.00096490665,0.00084373687,0.004798265,0.0014660544,0.000041904692,0.0017201506,0.0000019596978,0.0058334554,0.0010394986,0.005255225,0.97798324],"study_design_scores_gemma":[0.00022857972,0.00024999765,0.00040427694,0.00024735872,0.00004470673,0.00011457587,0.0003295491,7.819552e-7,0.0000073036917,0.00004995037,0.9981924,0.00013049805],"about_ca_topic_score_codex":0.000020258336,"about_ca_topic_score_gemma":0.000081262486,"teacher_disagreement_score":0.9929372,"about_ca_system_score_codex":0.00004862971,"about_ca_system_score_gemma":0.00059240486,"threshold_uncertainty_score":0.56345433},"labels":[],"label_agreement":null},{"id":"W2156142245","doi":"10.1038/ismej.2011.163","title":"Microbes in thawing permafrost: the unknown variable in the climate change equation","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Lawrence Berkeley National Laboratory; Oak Ridge National Laboratory; Biological and Environmental Research; Office of Science; U.S. Department of Energy; Earth Sciences Division; Joint Genome Institute; Russian Academy of Sciences; University of Tennessee, Knoxville; McGill University; Princeton University; Battelle","keywords":"Biology; Permafrost; Climate change; Variable (mathematics); Ecology; Atmospheric sciences; Computational biology; Mathematics; Mathematical analysis","score_opus":0.1471236102102383,"score_gpt":0.24988409893438804,"score_spread":0.10276048872414975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156142245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97669834,0.001953195,0.00001682587,0.0049289665,0.0006375751,0.0002988385,0.00027466493,0.000008713069,0.01518287],"genre_scores_gemma":[0.99516654,0.0015991319,0.000040124487,0.002475586,0.00058808504,0.0000037807304,0.0000770873,0.0000045467164,0.000045133813],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99864125,0.00035929607,0.00025724387,0.00010473723,0.00022207924,0.00041540238],"domain_scores_gemma":[0.99936336,0.00027834484,0.00010832632,0.00019216609,0.000021306325,0.00003646939],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0027334322,0.00011694872,0.00011542451,0.00007497983,0.0004517058,0.00016629578,0.0005635795,0.00005021551,0.004311154],"category_scores_gemma":[0.00002599487,0.000049519287,0.000048474212,0.00030677908,0.000073078576,0.000344172,0.000024094586,0.0004948071,0.0001641521],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008751038,0.000052573916,0.8943803,0.000016567092,0.000011307777,0.00006920561,0.09514188,0.00019764,0.00039000585,0.0007673064,0.000987283,0.007898422],"study_design_scores_gemma":[0.0003111402,0.000067626184,0.9803932,0.00008685189,0.000018920207,0.00044048767,0.006723113,0.004057455,0.00003458129,0.0034207278,0.004318575,0.00012738029],"about_ca_topic_score_codex":0.004637597,"about_ca_topic_score_gemma":0.023163356,"teacher_disagreement_score":0.08841877,"about_ca_system_score_codex":0.000007869191,"about_ca_system_score_gemma":0.0000226932,"threshold_uncertainty_score":0.996599},"labels":[],"label_agreement":null},{"id":"W2156481911","doi":"10.1038/ismej.2008.124","title":"An oligarchic microbial assemblage in the anoxic bottom waters of a volcanic subglacial lake","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"NASA Astrobiology Institute; National Aeronautics and Space Administration","keywords":"Biology; Phylotype; Archaea; Anoxic waters; Library; Ecology; 16S ribosomal RNA; Bacteria; Paleontology","score_opus":0.015244315957541173,"score_gpt":0.2357745833576478,"score_spread":0.22053026740010664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156481911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99781704,0.000009304228,0.000025619263,0.001057436,0.00014562768,0.000099148725,0.000004164063,0.000004887015,0.0008367876],"genre_scores_gemma":[0.9987067,0.000049776223,0.000054050346,0.0010032632,0.00011124331,0.0000015492824,0.000004795274,0.0000068286467,0.000061783496],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981342,0.0011171816,0.00024812118,0.00009308488,0.00012275837,0.00028465796],"domain_scores_gemma":[0.99939233,0.00012623666,0.0001244758,0.0003075361,0.0000059343565,0.00004351467],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011339913,0.00010222883,0.00015810165,0.0000357174,0.00052041846,0.000012879216,0.0010169467,0.000079018515,0.0016542313],"category_scores_gemma":[0.000018852506,0.000057735546,0.000075461016,0.00015411335,0.00056485547,0.00013651451,0.000117758405,0.0008859138,0.00008595633],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023154939,0.00046405412,0.05122064,0.000004102503,0.000026975726,0.00007157927,0.027948584,0.0014266956,0.9041035,0.00007028384,0.014020499,0.0004115456],"study_design_scores_gemma":[0.0010094683,0.0006213871,0.9798397,0.000014979087,0.000028557404,0.0023600424,0.0007994687,0.00015673022,0.0055263224,0.0039295545,0.005481457,0.00023232392],"about_ca_topic_score_codex":0.00021232452,"about_ca_topic_score_gemma":0.011262892,"teacher_disagreement_score":0.9286191,"about_ca_system_score_codex":0.00003734477,"about_ca_system_score_gemma":0.000034996676,"threshold_uncertainty_score":0.9992584},"labels":[],"label_agreement":null},{"id":"W2159625083","doi":"10.1038/ismej.2008.46","title":"Function and evolution of the <i>psbA</i> gene family in marine <i>Synechococcus: Synechococcus</i> sp. WH7803 as a case study","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Allison University","funders":"Natural Sciences and Engineering Research Council of Canada; Région Bretagne; Canada Research Chairs; Agence Nationale de la Recherche","keywords":"Biology; Gene; Synechococcus; Genome; Genetics; Photosystem II; Gene isoform; Cyanobacteria; Gene family; Phylogenetic tree; Botany; Photosynthesis; Bacteria","score_opus":0.008918263756065394,"score_gpt":0.2200609591743457,"score_spread":0.21114269541828032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159625083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741334,0.00057567,0.0010133409,0.00015694526,0.00022788224,0.0003525123,0.000005617297,0.0000049368005,0.0002497429],"genre_scores_gemma":[0.99888706,0.00043830863,0.00005983946,0.00028274654,0.00014251242,0.000017428809,0.0000012966991,0.000016406459,0.00015440882],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891925,0.00014383177,0.00031268148,0.00019834966,0.00021282064,0.00021308115],"domain_scores_gemma":[0.99928176,0.000016087288,0.00020228498,0.00033378598,0.00009787075,0.00006820743],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054021314,0.00015350094,0.00016511888,0.00004571252,0.0002867533,0.000018615276,0.00023672347,0.00009244637,0.0000098962],"category_scores_gemma":[0.00006541167,0.000091685455,0.00008128718,0.00014993042,0.0000964872,0.000010408038,0.00022192993,0.0002716262,0.000001953536],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016954723,0.00025782437,0.0073073814,0.000009876185,0.000055760018,0.0001828803,0.00029783105,0.00007014463,0.99052685,0.000033145625,0.00017041716,0.00091833837],"study_design_scores_gemma":[0.0041970992,0.0022470308,0.036769513,0.000066328044,0.00023709348,0.05135849,0.007495028,0.00015339658,0.8884097,0.0059465426,0.0026806155,0.00043918678],"about_ca_topic_score_codex":0.00038488998,"about_ca_topic_score_gemma":0.0001743796,"teacher_disagreement_score":0.10211718,"about_ca_system_score_codex":0.000034420445,"about_ca_system_score_gemma":0.00019472525,"threshold_uncertainty_score":0.37388244},"labels":[],"label_agreement":null},{"id":"W2161886157","doi":"10.1038/ismej.2010.41","title":"The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":310,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Biotechnology Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Permafrost; Metagenomics; Actinobacteria; Biology; Microbial population biology; Abundance (ecology); Bacteroidetes; Soil water; Soil microbiology; Ecology; Gene; 16S ribosomal RNA; Genetics; Bacteria","score_opus":0.03663409645877831,"score_gpt":0.24909680274727908,"score_spread":0.21246270628850078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161886157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99344575,0.0021433765,0.000034860816,0.0021107134,0.00090973725,0.000067287394,0.0011186686,0.0000046797695,0.00016493075],"genre_scores_gemma":[0.9972505,0.000973565,0.000054654047,0.00028160433,0.0006003202,3.6462197e-7,0.00022418846,0.000004524245,0.0006102602],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989455,0.00012782986,0.00028449701,0.00012324269,0.00026383804,0.0002551183],"domain_scores_gemma":[0.99917454,0.00023653865,0.00022126264,0.00017753275,0.00007712416,0.000113005815],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008388819,0.00012497955,0.0001678503,0.000045371835,0.0008273708,0.00018655264,0.0002685201,0.000054178883,0.0073177023],"category_scores_gemma":[0.000039997794,0.00006167932,0.000097841235,0.000094900475,0.00029296658,0.00014222242,0.000017987091,0.00049744826,0.000040351602],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017574662,0.000016392549,0.21646497,0.000018481076,0.0002241772,0.000017175778,0.000837234,0.00041217927,0.7625352,0.000030781142,0.015943846,0.0033237878],"study_design_scores_gemma":[0.00055945135,0.00011620364,0.98283607,0.000016370146,0.00023373705,0.0019682576,0.001102688,0.0010491608,0.0024443667,0.0016110352,0.0078679705,0.00019470562],"about_ca_topic_score_codex":0.0027112958,"about_ca_topic_score_gemma":0.0063893665,"teacher_disagreement_score":0.7663711,"about_ca_system_score_codex":0.0000059262,"about_ca_system_score_gemma":0.000068194924,"threshold_uncertainty_score":0.99358976},"labels":[],"label_agreement":null},{"id":"W2166152927","doi":"10.1038/ismej.2012.48","title":"Influence of geogenic factors on microbial communities in metallogenic Australian soils","year":2012,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Geochemistry and Geologic Mapping","field":"Computer Science","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Research Council; University of Adelaide; Commonwealth Scientific and Industrial Research Organisation; Barrick Gold Corporation","keywords":"Biology; Soil water; Firmicutes; Alphaproteobacteria; Soil microbiology; Microbial population biology; Proteobacteria; Topsoil; Botany; Ecology; Bacteria; 16S ribosomal RNA","score_opus":0.03595779145907074,"score_gpt":0.2503031662992922,"score_spread":0.21434537484022148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166152927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99749863,0.0000729368,0.00021519006,0.0014619261,0.00013048315,0.00004010414,0.0000012346553,0.000010533647,0.0005689624],"genre_scores_gemma":[0.9991117,0.000019749828,0.0002763296,0.00014762394,0.00005915151,9.332511e-7,5.9484404e-7,0.0000015517356,0.00038232937],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989565,0.00019996297,0.00027269885,0.00005929453,0.00016728565,0.0003442288],"domain_scores_gemma":[0.9991853,0.00015367217,0.00018114343,0.00035555736,0.000053375363,0.000070934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096533314,0.00010745291,0.00015117462,0.00006536682,0.00015492678,0.000043804906,0.0011574562,0.00005509128,0.00006987375],"category_scores_gemma":[0.000059032223,0.000068572015,0.00008766793,0.0001600249,0.00013500928,0.00028696796,0.00018488645,0.00047851427,0.000012481004],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009509574,0.001057725,0.3025632,0.00013345398,0.0005254628,0.00003806984,0.08500296,0.19254445,0.38379762,0.025690211,0.0039098603,0.0046419175],"study_design_scores_gemma":[0.0012086463,0.00028864568,0.7028201,0.00026915187,0.000061310624,0.0011631808,0.0036622318,0.0007471394,0.25849658,0.013973643,0.01661544,0.00069392775],"about_ca_topic_score_codex":0.000083893785,"about_ca_topic_score_gemma":0.000011963473,"teacher_disagreement_score":0.40025693,"about_ca_system_score_codex":0.000027702908,"about_ca_system_score_gemma":0.000039037914,"threshold_uncertainty_score":0.27962855},"labels":[],"label_agreement":null},{"id":"W2168431291","doi":"10.1038/ismej.2013.39","title":"Mesoscale distribution and functional diversity of picoeukaryotes in the first-year sea ice of the Canadian Arctic","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"Natural Resources Canada; Fisheries and Oceans Canada; Natural Sciences and Engineering Research Council of Canada; ArcticNet","keywords":"Sea ice; Arctic; Biology; Trophic level; Oceanography; Ecology; Geology","score_opus":0.010538985456260424,"score_gpt":0.17792196893618162,"score_spread":0.1673829834799212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168431291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99304277,0.00001124635,0.0000075685,0.0063874414,0.00005400182,0.00006875686,0.0000098827395,4.91124e-7,0.00041785094],"genre_scores_gemma":[0.9995751,0.000009851204,0.000005349256,0.0003620124,0.000013885315,5.984505e-7,0.000002105624,8.526171e-7,0.000030270683],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994932,0.00022544146,0.00007932215,0.000033020566,0.000075047516,0.00009398039],"domain_scores_gemma":[0.99965805,0.0001324717,0.00006420756,0.0001105891,0.000011110549,0.0000236002],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004035501,0.00003434146,0.000052745705,0.000007772406,0.00071075506,0.0000073052774,0.00027376297,0.00003407845,0.001736404],"category_scores_gemma":[0.00003427381,0.000017008033,0.000025778729,0.000075585776,0.00036877368,0.00006587159,0.00020133161,0.00028528375,0.000014557477],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011716137,0.00003096365,0.9869799,0.0000029757023,0.000009459127,2.3474507e-7,0.0013877687,0.00035874167,0.00061084045,0.0002635132,0.010240725,0.00010317947],"study_design_scores_gemma":[0.0000953652,0.000025346279,0.99194217,0.0000041982007,0.000008252075,0.00002208704,0.00022999421,0.00005044382,0.000068013775,0.0070242947,0.00051070057,0.000019150933],"about_ca_topic_score_codex":0.11843546,"about_ca_topic_score_gemma":0.40003034,"teacher_disagreement_score":0.2815949,"about_ca_system_score_codex":0.000074419695,"about_ca_system_score_gemma":0.000019261613,"threshold_uncertainty_score":0.99917614},"labels":[],"label_agreement":null},{"id":"W2168442789","doi":"10.1038/ismej.2011.124","title":"Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":310,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"British Antarctic Survey; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Koninklijke Nederlandse Akademie van Wetenschappen; Fonds Québécois de la Recherche sur la Nature et les Technologies; Nederlands Instituut voor Ecologie","keywords":"Biology; Ecology; Microorganism; Acidobacteria; Ecosystem; Pyrosequencing; Global warming; Microbial ecology; Abiotic component; Alphaproteobacteria; Species richness; Abundance (ecology); Soil microbiology; Soil water; Climate change; Proteobacteria; Bacteria; 16S ribosomal RNA","score_opus":0.031912592043488154,"score_gpt":0.2666588237250712,"score_spread":0.23474623168158307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168442789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986266,0.00004762973,0.0000306326,0.0009281978,0.000054213204,0.00014586201,0.0000049302935,0.0000018536808,0.00016008531],"genre_scores_gemma":[0.99924594,0.000038769715,0.00020676495,0.00032716486,0.000011161764,0.0000050933145,1.0490676e-7,0.000009179025,0.00015579452],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99847215,0.00037999408,0.00027699265,0.00013362401,0.00024737752,0.00048986526],"domain_scores_gemma":[0.99947584,0.00009391632,0.00010269825,0.00017703846,0.0000021765281,0.00014833074],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0021678933,0.00008701406,0.00015788742,0.00006186789,0.00010839906,0.000013465418,0.00038543902,0.000045271416,0.0011876471],"category_scores_gemma":[0.0001619925,0.00006315028,0.000041943556,0.00015944341,0.00020309965,0.000117513206,0.00031083077,0.00034477268,0.00029909887],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012213165,0.0002451802,0.76681113,0.0000037422453,0.000012387069,0.00026276897,0.01904594,0.00015294758,0.21070595,0.000001059132,0.00014531228,0.0013922802],"study_design_scores_gemma":[0.00073623506,0.00016577789,0.9897635,0.000027083744,0.000002933517,0.00009791143,0.0016261194,0.00002270293,0.006876956,0.00027647274,0.00033248568,0.00007183732],"about_ca_topic_score_codex":0.0007283651,"about_ca_topic_score_gemma":0.003121302,"teacher_disagreement_score":0.22295238,"about_ca_system_score_codex":0.0003341891,"about_ca_system_score_gemma":0.00002071353,"threshold_uncertainty_score":0.9997254},"labels":[],"label_agreement":null},{"id":"W2170521038","doi":"10.1038/ismej.2014.234","title":"A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation","year":2014,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Advancing Translational Sciences; National Institutes of Health; Georgia Clinical and Translational Science Alliance; National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institute for Advanced Research","keywords":"Sputum; Cystic fibrosis; Microbiology; Pseudomonas aeruginosa; Microbial population biology; Exacerbation; Biology; Bacteria; Fermentation; Biofilm; Physiology; Food science; Medicine; Pathology; Immunology","score_opus":0.013039500595870689,"score_gpt":0.28708636379400204,"score_spread":0.2740468631981314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170521038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9826847,0.00012160532,0.014639792,0.001832834,0.00014815877,0.00035996208,0.00002261817,0.00005160028,0.00013875292],"genre_scores_gemma":[0.9933832,0.000011255365,0.0050270855,0.00013105661,0.0010166983,0.000008740567,0.000063202526,0.000018182966,0.00034056563],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982563,0.00042214233,0.00030544784,0.00015400811,0.0005977737,0.00026432454],"domain_scores_gemma":[0.998951,0.00021918524,0.00027970853,0.00015607462,0.00020164119,0.00019235056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001295134,0.0001296797,0.00023553969,0.00009927029,0.00037351996,0.00020176092,0.00010194069,0.0000902579,0.000029310238],"category_scores_gemma":[0.00033245652,0.00008448673,0.00006634264,0.0001382767,0.000047578294,0.0002575332,0.000018438728,0.0003733441,0.000013880443],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00095682073,0.00015603493,0.13607354,0.0006142953,0.00032903798,0.000008622461,0.0028555999,0.000589784,0.82468224,0.00016881339,0.006723591,0.026841646],"study_design_scores_gemma":[0.00804397,0.0032656428,0.93179107,0.0012279269,0.0010978583,0.00047360154,0.002026288,0.023215717,0.021174662,0.0006133303,0.0066520376,0.00041792306],"about_ca_topic_score_codex":0.000019615129,"about_ca_topic_score_gemma":0.000010552619,"teacher_disagreement_score":0.80350757,"about_ca_system_score_codex":0.0004976389,"about_ca_system_score_gemma":0.00008173204,"threshold_uncertainty_score":0.3445269},"labels":[],"label_agreement":null},{"id":"W2171734506","doi":"10.1038/ismej.2010.11","title":"Microbial secondary succession in a chronosequence of chalk grasslands","year":2010,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Botany and Plant Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Koninklijke Nederlandse Akademie van Wetenschappen; Nederlands Instituut voor Ecologie","keywords":"Chronosequence; Ecological succession; Primary succession; Acidobacteria; Biology; Secondary succession; Gemmatimonadetes; Ecology; Proteobacteria; Paleontology","score_opus":0.008375538201721794,"score_gpt":0.20133599885899142,"score_spread":0.19296046065726963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171734506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945064,0.00013146791,4.0026228e-7,0.0041773277,0.00036320338,0.000037610713,0.000012796893,0.0000042004376,0.0007665475],"genre_scores_gemma":[0.99934393,0.00012365957,0.000020726384,0.00012780016,0.0002972736,9.108789e-7,0.0000017548311,2.3236959e-7,0.00008369589],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995056,0.00005973099,0.00016022661,0.00006432957,0.00006598002,0.00014416232],"domain_scores_gemma":[0.9996623,0.00015841339,0.00010443084,0.000023060547,0.000024513274,0.000027309832],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046540593,0.000057682104,0.00011090134,0.000007497984,0.00020409767,0.000015233394,0.0002269838,0.00006536873,0.0006935805],"category_scores_gemma":[0.00002627444,0.00001545009,0.000042016967,0.00009461215,0.000105724896,0.000067211164,0.000040437924,0.0004874941,0.000006507479],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002445288,0.000029081093,0.052737813,0.0000015768298,0.0000068818636,0.000009622357,0.00013818497,7.829471e-7,0.9268224,0.000047649275,0.0009492387,0.019232294],"study_design_scores_gemma":[0.00015963927,0.00011273769,0.98146135,0.000018842778,0.0000051712036,0.00029004403,0.0001665249,0.000008453207,0.010685083,0.0013196417,0.005709741,0.00006276572],"about_ca_topic_score_codex":0.00008927993,"about_ca_topic_score_gemma":0.005464575,"teacher_disagreement_score":0.9287235,"about_ca_system_score_codex":0.0000054034153,"about_ca_system_score_gemma":0.000012758904,"threshold_uncertainty_score":0.759422},"labels":[],"label_agreement":null},{"id":"W2175093233","doi":"10.1038/ismej.2008.108","title":"Shotgun metaproteomics of the human distal gut microbiota","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":542,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Ste. Anne's Hospital","funders":"Oak Ridge National Laboratory; National Institutes of Health; Universitetssjukhuset Örebro; U.S. Department of Energy; Örebro Universitet; Arnold and Mabel Beckman Initiative for Macular Research; UT-Battelle; Lawrence Berkeley National Laboratory; National Institute of General Medical Sciences; Battelle","keywords":"Metaproteomics; Metagenomics; Biology; Proteome; Computational biology; Shotgun proteomics; Microbiome; Human microbiome; Proteomics; Gut flora; Shotgun; Shotgun sequencing; Gene; Microbiology; Genetics; DNA sequencing; Biochemistry","score_opus":0.01642312010991245,"score_gpt":0.24886168061318448,"score_spread":0.23243856050327202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2175093233","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974535,0.0004258953,0.000081094884,0.0011779823,0.00017547383,0.00012087773,0.000041130916,0.0000022759177,0.0005217506],"genre_scores_gemma":[0.9973277,0.00017218525,0.0002081612,0.0005311273,0.00033361325,0.0000013131421,0.000013837728,0.000014176672,0.0013978845],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992388,0.00010186762,0.00025058063,0.00010645193,0.00009545533,0.00020684424],"domain_scores_gemma":[0.99932975,0.000005647863,0.00020050239,0.0003436215,0.00006883671,0.000051624265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023842571,0.00010511154,0.00012535517,0.000016888678,0.00052497437,0.000014794015,0.0004657126,0.00008213902,0.000085510655],"category_scores_gemma":[0.00002101215,0.000056035507,0.00018517234,0.000058891746,0.00018641744,0.0000024212559,0.00013930352,0.0002738567,0.0000068593017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012477217,0.000032383254,0.00087028224,0.0000059543104,0.000039317616,0.0000013801149,0.00013694252,0.000011070284,0.9804129,0.00003482641,0.018391112,0.000051337156],"study_design_scores_gemma":[0.0008958047,0.00021763297,0.11086614,0.00004232508,0.00006362773,0.0028307005,0.0001362589,0.0000051725365,0.8146891,0.0002511674,0.06978074,0.00022134114],"about_ca_topic_score_codex":0.000015210451,"about_ca_topic_score_gemma":0.00002085715,"teacher_disagreement_score":0.16572382,"about_ca_system_score_codex":0.000015707123,"about_ca_system_score_gemma":0.00015174568,"threshold_uncertainty_score":0.40377316},"labels":[],"label_agreement":null},{"id":"W2180202274","doi":"10.1038/ismej.2015.148","title":"The initial state of the human gut microbiome determines its reshaping by antibiotics","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":367,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University; Fonds Québécois de la Recherche sur la Nature et les Technologies; Mitacs; Québec Consortium for Drug Discovery; Compute Canada; Université Laval","keywords":"Microbiome; Antibiotics; Biology; Metagenomics; Enterobacter cloacae; Antibiotic resistance; Microbiology; Dysbiosis; Genetics; Gene; Enterobacteriaceae; Escherichia coli","score_opus":0.03864666385635142,"score_gpt":0.3254168428144214,"score_spread":0.28677017895807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2180202274","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99487156,0.0019891348,0.000041516367,0.0023316222,0.00041032556,0.00011002209,0.000040218856,0.0000026693285,0.00020295657],"genre_scores_gemma":[0.99721223,0.00028652142,0.000035450004,0.00063831784,0.0003484504,1.9682784e-7,0.0000074462987,0.00001564687,0.0014557635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902517,0.00018448134,0.0003013217,0.00009997126,0.00012492255,0.00026416],"domain_scores_gemma":[0.9991842,0.000016301876,0.00026826173,0.00028734276,0.00016945762,0.000074449286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071254297,0.00010930761,0.00010746047,0.000016197599,0.00053002225,0.00006682496,0.00050804025,0.00006116801,0.0000040477385],"category_scores_gemma":[0.000056438246,0.000051674484,0.00008960931,0.000065410415,0.00020781043,0.000004207958,0.00017868567,0.0002386919,0.0000056679514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002367703,0.000016869006,0.0002441273,0.000006530645,0.000025905092,9.57231e-7,0.00020888382,0.000009428181,0.95849776,0.000008992347,0.04051821,0.0004386744],"study_design_scores_gemma":[0.0007269143,0.00023424492,0.002500193,0.00005209666,0.000030933974,0.00041582834,0.00015970654,0.000017541677,0.877407,0.00026809867,0.11804939,0.00013806463],"about_ca_topic_score_codex":0.0000135185055,"about_ca_topic_score_gemma":0.00006499123,"teacher_disagreement_score":0.081090756,"about_ca_system_score_codex":0.00001767278,"about_ca_system_score_gemma":0.00017675948,"threshold_uncertainty_score":0.40765563},"labels":[],"label_agreement":null},{"id":"W2188359693","doi":"10.1038/ismej.2015.209","title":"Synbiotic approach restores intestinal homeostasis and prolongs survival in leukaemic mice with cachexia","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":206,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Fonds De La Recherche Scientifique - FNRS; University of Minnesota","keywords":"Biology; Cachexia; Gut flora; Lactobacillus reuteri; Immunology; Cancer; Microbiome; Lactobacillus; Wasting; Probiotic; Cancer research; Bioinformatics; Endocrinology","score_opus":0.027900616999941657,"score_gpt":0.25797051703954565,"score_spread":0.230069900039604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2188359693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959657,0.0021773155,0.00037356289,0.00092628767,0.00007024871,0.00012578139,0.0000026778878,0.0000045738893,0.00035380817],"genre_scores_gemma":[0.99781275,0.0002109104,0.0014330258,0.00017324532,0.00021304566,0.0000028126444,0.00000841384,0.000015903364,0.00012990819],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99910307,0.00015507154,0.00017535215,0.00017575249,0.00012230687,0.0002684623],"domain_scores_gemma":[0.99950355,0.000014032955,0.00010216822,0.00015646945,0.00007918848,0.00014457069],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007566993,0.00012726826,0.0001445408,0.000048461607,0.00009830301,0.00004925864,0.00019162739,0.000078763085,0.0000019858123],"category_scores_gemma":[0.00006535261,0.00007794952,0.000023973224,0.000089298184,0.00014576383,0.000006109085,0.00007296425,0.00034784534,0.0000023019036],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00425937,0.00071261276,0.35161015,0.00027513955,0.00033699253,0.00018620555,0.0076308204,0.0010289337,0.6008713,0.0003693824,0.020940633,0.011778445],"study_design_scores_gemma":[0.014529686,0.007761867,0.8568717,0.0005487794,0.00033686016,0.04033268,0.014801803,0.00079012103,0.03845699,0.001199857,0.022431182,0.0019384363],"about_ca_topic_score_codex":0.00012494234,"about_ca_topic_score_gemma":0.00018989269,"teacher_disagreement_score":0.56241435,"about_ca_system_score_codex":0.00004114993,"about_ca_system_score_gemma":0.0002869582,"threshold_uncertainty_score":0.31786892},"labels":[],"label_agreement":null},{"id":"W2199498800","doi":"10.1038/ismej.2015.189","title":"The biogeography of the atlantic salmon (<i>Salmo salar</i>) gut microbiome","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":405,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère des Ressources naturelles et des Forêts (Québec); Université Laval","funders":"National Marine Fisheries Service; Natural Sciences and Engineering Research Council of Canada; National Oceanic and Atmospheric Administration; Inland Fisheries Ireland; University College Cork","keywords":"Biology; Salmo; Microbiome; Vertebrate; Ecology; Phylotype; Zoology; Microbial ecology; Fishery; Phylogenetics; Fish <Actinopterygii>; Bacteria; Gene; Genetics","score_opus":0.019925202618688388,"score_gpt":0.26464813904802736,"score_spread":0.24472293642933898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2199498800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98305416,0.008800444,0.00004104824,0.005382664,0.0015785075,0.00024684254,0.00003032054,0.000020272939,0.0008457587],"genre_scores_gemma":[0.9979054,0.0005500835,0.000008204056,0.0001665432,0.00012893927,0.000004535734,0.0000052916153,0.0000141413,0.0012168768],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99832255,0.0006847736,0.0003528233,0.00012106892,0.00009121487,0.00042754345],"domain_scores_gemma":[0.99876773,0.00020299172,0.00022562363,0.0004904987,0.00025577503,0.00005735401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014256001,0.00014200421,0.00017744301,0.00010451513,0.0011033418,0.00008992716,0.0007959857,0.00011795005,0.00019020011],"category_scores_gemma":[0.0001213417,0.000058085774,0.0003220195,0.0004484237,0.00081782875,0.00006445654,0.00023230087,0.0006676772,0.00023636315],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017763423,0.00016541792,0.011648679,0.000008347641,0.0004009932,0.0000035988692,0.0003488121,0.000016689199,0.85206836,0.00081640837,0.13282214,0.001522906],"study_design_scores_gemma":[0.0033368536,0.0004458787,0.045932636,0.00016088423,0.00036597974,0.004897577,0.0016379964,0.000008495103,0.11265512,0.005302372,0.824849,0.00040717237],"about_ca_topic_score_codex":0.00037310636,"about_ca_topic_score_gemma":0.00006734321,"teacher_disagreement_score":0.73941326,"about_ca_system_score_codex":0.00003845544,"about_ca_system_score_gemma":0.00023487437,"threshold_uncertainty_score":0.8486124},"labels":[],"label_agreement":null},{"id":"W2234726504","doi":"10.1038/ismej.2015.238","title":"Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Swiss Federal Institute for Forest, Snow and Landscape Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; McGill University; Génome Québec; Eidgenössische Technische Hochschule Zürich; National Science Foundation","keywords":"Glacier; Snow; Ecosystem; Ecology; Habitat; Deposition (geology); Soil water; Environmental science; Alpine climate; Sediment; Geology; Physical geography; Biology; Geography; Geomorphology","score_opus":0.0075695746315916895,"score_gpt":0.24267025660048766,"score_spread":0.23510068196889597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2234726504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990305,0.000018417992,0.000043808042,0.00051906623,0.00010942058,0.00007996258,0.000026598542,0.0000030806223,0.00016920094],"genre_scores_gemma":[0.99958587,0.000019652718,0.00007565737,0.000047740945,0.00013295944,0.0000021677909,6.555706e-7,0.000008296114,0.00012700376],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99866253,0.0003502638,0.00028863247,0.00011644748,0.00025475264,0.000327359],"domain_scores_gemma":[0.99950165,0.00003292076,0.00014050942,0.00017180074,0.000014081263,0.0001390258],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008425583,0.00008122956,0.00016799018,0.00006219803,0.000075701,0.00001817274,0.0003757362,0.00006494982,0.0030892505],"category_scores_gemma":[0.000033312645,0.000044002943,0.000060384788,0.000088808076,0.00028972264,0.00033008182,0.0001269636,0.00016464411,0.000056189605],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019493799,0.0004097835,0.20569725,0.000012941113,0.000042817468,0.0002309982,0.0017109311,0.0004530019,0.7766713,0.000005682559,0.00048959797,0.012326338],"study_design_scores_gemma":[0.0036431095,0.002117848,0.88162696,0.00008388812,0.000033233347,0.0011610849,0.00043261182,0.00063449447,0.108448505,0.00073909917,0.00084582635,0.00023332526],"about_ca_topic_score_codex":0.00020779834,"about_ca_topic_score_gemma":0.0039847307,"teacher_disagreement_score":0.6759297,"about_ca_system_score_codex":0.00011192991,"about_ca_system_score_gemma":0.00003878544,"threshold_uncertainty_score":0.99782205},"labels":[],"label_agreement":null},{"id":"W2239933105","doi":"10.1038/ismej.2015.242","title":"Single-cell activity of freshwater aerobic anoxygenic phototrophic bacteria and their contribution to biomass production","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Anoxygenic photosynthesis; Bacteria; Biology; Phototroph; Trophic level; Ecology; Biomass (ecology); Bacterial cell structure","score_opus":0.011634168953006252,"score_gpt":0.19912870288818796,"score_spread":0.1874945339351817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2239933105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968316,0.000012636913,0.00023601347,0.0025236134,0.00022018627,0.00012268388,0.000008726544,0.0000058162973,0.000038725117],"genre_scores_gemma":[0.99961793,0.000022760052,0.00005614366,0.000082551574,0.00006367876,0.0000018862827,0.0000010075335,0.000004673532,0.00014936508],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921376,0.00035743674,0.000121912075,0.000096589836,0.000043262677,0.00016706398],"domain_scores_gemma":[0.99957967,0.00006166004,0.00011847565,0.00017749215,0.000014949767,0.000047772468],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004343839,0.000080606245,0.00011845934,0.000023139368,0.0002326665,0.000009661872,0.00017324137,0.000055262197,0.001445953],"category_scores_gemma":[0.00003173434,0.000038849626,0.000034443212,0.000066684785,0.00021512428,0.00012881924,0.00014727285,0.00013587312,0.00006242117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012983281,0.00006631112,0.00057137065,0.000001504441,0.000009564839,2.5017766e-7,0.00023854186,0.00000450341,0.9965934,0.000001791356,0.00093335885,0.0014495519],"study_design_scores_gemma":[0.00026955325,0.0002886863,0.049346846,0.000010729097,0.000008762544,0.00008668732,0.00001203707,0.0000034047703,0.9443524,0.0010220229,0.004532901,0.000065961096],"about_ca_topic_score_codex":0.0000370058,"about_ca_topic_score_gemma":0.00037855445,"teacher_disagreement_score":0.05224101,"about_ca_system_score_codex":0.00007359496,"about_ca_system_score_gemma":0.000007253272,"threshold_uncertainty_score":0.99946684},"labels":[],"label_agreement":null},{"id":"W2270555468","doi":"10.1038/ismej.2015.226","title":"Interactions between hydrology and water chemistry shape bacterioplankton biogeography across boreal freshwater networks","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":280,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Hydro-Québec","keywords":"Bacterioplankton; Biological dispersal; Ecology; Boreal; Metacommunity; Biology; Biogeography; STREAMS; Freshwater ecosystem; Species richness; Spatial ecology; Community structure; Ecosystem; Environmental science; Phytoplankton; Nutrient; Population","score_opus":0.008496172782838157,"score_gpt":0.2282507939841138,"score_spread":0.21975462120127565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2270555468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99504167,0.0000135701775,0.00011145985,0.00400867,0.00015536447,0.000039420574,0.000027273867,0.000011936192,0.0005906176],"genre_scores_gemma":[0.9988724,0.00007504262,0.000027071377,0.00044979618,0.0002642577,0.0000022774752,0.000018633466,0.000007629387,0.00028290303],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990847,0.00018817256,0.00017774361,0.00012097448,0.00004556291,0.00038281],"domain_scores_gemma":[0.9995113,0.00013638134,0.000068918234,0.00019001396,0.000006203077,0.00008717454],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00038590014,0.000113301576,0.00013995392,0.000011519281,0.00064753,0.000032243097,0.00033886536,0.0001148517,0.014822989],"category_scores_gemma":[0.000005993152,0.000050920993,0.00006103925,0.000036323494,0.00061601796,0.0001400064,0.00040343523,0.00048511452,0.00013896039],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014433046,0.0000535561,0.31171662,0.0000029311605,0.00014104402,0.0000118795,0.0014580089,0.000055131586,0.6542113,0.0000027383112,0.014036478,0.018166006],"study_design_scores_gemma":[0.0009798644,0.00020405902,0.75574046,0.000025100646,0.00006632051,0.0012206122,0.000095011,0.00019440416,0.021880722,0.0037410334,0.21550643,0.00034596998],"about_ca_topic_score_codex":0.000087147266,"about_ca_topic_score_gemma":0.0005330468,"teacher_disagreement_score":0.6323306,"about_ca_system_score_codex":0.000028101253,"about_ca_system_score_gemma":0.000002756801,"threshold_uncertainty_score":0.9860776},"labels":[],"label_agreement":null},{"id":"W2270670832","doi":"10.1038/ismej.2015.255","title":"Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Ministry of Science and Technology, Taiwan; Academia Sinica","keywords":"Biology; Anoxic waters; Androgen; Metagenomics; Androgen receptor; Biochemistry; Gene; Genetics; Ecology; Hormone","score_opus":0.02301143747554099,"score_gpt":0.25972043964505903,"score_spread":0.23670900216951804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2270670832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99319243,0.0019735186,0.0033777866,0.0012913591,0.000029180394,0.000099166515,0.00002415149,0.0000018293345,0.0000105796025],"genre_scores_gemma":[0.9970339,0.0015649863,0.0010063197,0.00016404937,0.00009223303,0.000007460369,0.000015334756,0.000008937647,0.00010675785],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904794,0.00013242016,0.00028881678,0.00019033927,0.00016088749,0.0001795798],"domain_scores_gemma":[0.9993233,0.00005860821,0.00019451084,0.00035147963,0.00003298352,0.000039112183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004926174,0.00014933189,0.00012380563,0.000015275755,0.000110063964,0.000024182862,0.00042935272,0.00011610854,0.000010035003],"category_scores_gemma":[0.00009379569,0.000059562833,0.00007757945,0.00007654657,0.00023244071,0.0000039330453,0.0000857489,0.00017348115,0.0000010597822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048485555,0.00004125338,0.00048015785,0.000005524755,0.000043249023,0.0000015225141,0.00005533236,0.000013455061,0.99750036,0.0000043232776,0.00024592172,0.0015604188],"study_design_scores_gemma":[0.0005457943,0.00007234083,0.0017894001,0.000030108677,0.00004300678,0.00018667015,0.00032128664,0.000044605953,0.9961395,0.00023648115,0.0004942754,0.00009648887],"about_ca_topic_score_codex":0.0000048659927,"about_ca_topic_score_gemma":0.0000024872159,"teacher_disagreement_score":0.0038414928,"about_ca_system_score_codex":0.000020050169,"about_ca_system_score_gemma":0.000035887504,"threshold_uncertainty_score":0.2428902},"labels":[],"label_agreement":null},{"id":"W2278519007","doi":"10.1038/ismej.2016.4","title":"Bacterial communities from Arctic seasonal sea ice are more compositionally variable than those from multi-year sea ice","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"York University; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates","keywords":"Sea ice; Arctic; Biology; Arctic ice pack; Biogeochemical cycle; Abundance (ecology); Oceanography; Physical geography; Ecology; Geography; Geology","score_opus":0.02014219460198165,"score_gpt":0.23010056665154854,"score_spread":0.20995837204956688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2278519007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929323,0.00017780504,0.0008297766,0.0029776176,0.000555634,0.00013261677,0.0007114067,0.000030825453,0.0016520234],"genre_scores_gemma":[0.9916911,0.0003023746,0.0050941217,0.0006258508,0.0007763331,0.000005526855,0.00011091666,0.000035695837,0.0013580495],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978771,0.00061754935,0.0003251836,0.0002050347,0.000575274,0.00039982016],"domain_scores_gemma":[0.99849594,0.00055769447,0.0002632479,0.0004123528,0.00003077249,0.00023999736],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005322058,0.00024316764,0.00025576694,0.000024557763,0.00066516455,0.00017565025,0.0007943366,0.00012401775,0.0410781],"category_scores_gemma":[0.000020135374,0.00013278499,0.000116186544,0.000110535395,0.00034519203,0.00038371055,0.0002873761,0.0006356799,0.0010980522],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037635206,0.0022529077,0.5626705,0.000037712125,0.0026287707,0.00023485729,0.024321593,0.018061394,0.34506425,0.0005142899,0.032768335,0.0076818354],"study_design_scores_gemma":[0.007467838,0.00025415584,0.9188563,0.0011615227,0.00048168324,0.0002990572,0.004003965,0.010747557,0.002338176,0.021589251,0.031581502,0.0012189848],"about_ca_topic_score_codex":0.0038780635,"about_ca_topic_score_gemma":0.000276949,"teacher_disagreement_score":0.35618576,"about_ca_system_score_codex":0.00018617195,"about_ca_system_score_gemma":0.000041132538,"threshold_uncertainty_score":0.9996797},"labels":[],"label_agreement":null},{"id":"W2280701844","doi":"10.1038/ismej.2016.2","title":"Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":389,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Austrian Science Fund; National Science Foundation","keywords":"Biology; Hydroxylamine; Thaumarchaeota; Nitrosomonas; Nitrification; Archaea; Nitrite; Ammonia; Bacteria; Nitrosomonas europaea; Biochemistry; Microbial metabolism; Catabolism; Nitrogen cycle; Glutamine synthetase; Obligate; Metabolism; Glutamine; Nitrogen; Botany; Ecology; Nitrate; Chemistry","score_opus":0.014648223502279602,"score_gpt":0.21011587811152324,"score_spread":0.19546765460924365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2280701844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997779,0.00014291042,0.00004930374,0.001686566,0.00009248178,0.000186894,0.000009234946,0.000009020266,0.000044594017],"genre_scores_gemma":[0.99623597,0.0003048714,0.0029578505,0.000056473917,0.00009069329,0.000011857281,9.793358e-7,0.000014508895,0.00032677903],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909484,0.00006687757,0.0002075115,0.00017921113,0.00014619796,0.00030538658],"domain_scores_gemma":[0.999585,0.000076271615,0.00009385102,0.00012104785,0.000005310003,0.000118545264],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040182396,0.0001404528,0.00015260093,0.000037063935,0.0001390295,0.00006711348,0.00017426447,0.000039920837,0.00012186196],"category_scores_gemma":[0.000012755178,0.00006773201,0.0000426953,0.00004174845,0.00025345775,0.00023599454,0.00020439783,0.00008712341,0.000024389952],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003245859,0.00006256551,0.043777566,0.000007924467,0.000044593697,0.000051092433,0.0024632516,0.0000020303592,0.92582035,0.000069846545,0.00013492207,0.027241291],"study_design_scores_gemma":[0.0095652025,0.00101692,0.55884975,0.00025193382,0.00011294841,0.0021157258,0.00055731845,0.00020632076,0.38207427,0.04252229,0.0020866967,0.0006406217],"about_ca_topic_score_codex":0.0000490022,"about_ca_topic_score_gemma":0.000092639224,"teacher_disagreement_score":0.54374605,"about_ca_system_score_codex":0.0000952248,"about_ca_system_score_gemma":0.000008436874,"threshold_uncertainty_score":0.27620313},"labels":[],"label_agreement":null},{"id":"W2291268260","doi":"10.1038/ismej.2015.240","title":"Seasonal determinations of algal virus decay rates reveal overwintering in a temperate freshwater pond","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Infectivity; Temperate climate; Overwintering; Virus; Algae; Persistence (discontinuity); Ecology; Seasonality; Virology","score_opus":0.01049039520463392,"score_gpt":0.25359371474983916,"score_spread":0.24310331954520525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2291268260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973969,0.000015243238,0.00023030334,0.0013381484,0.00018656743,0.00005278082,0.00003136593,0.000004463676,0.0007442485],"genre_scores_gemma":[0.9972623,0.000028116528,0.00031337113,0.00010787594,0.00007499249,0.0000028918857,4.2522979e-7,0.000008535796,0.002201508],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992895,0.0000739773,0.00024322062,0.00009355899,0.000111568675,0.00018813717],"domain_scores_gemma":[0.99966353,0.000058104564,0.00010740138,0.000104774714,0.000012434832,0.000053729065],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025699654,0.000083326006,0.00009797761,0.000036472837,0.00012230019,0.000045415094,0.00020571546,0.0000299891,0.006038662],"category_scores_gemma":[0.000017856179,0.00004354977,0.00006761526,0.000072390656,0.00010960055,0.00035185533,0.00011227844,0.00015640268,0.00014871008],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024463221,0.00003263955,0.006990597,9.85488e-7,0.000008204604,0.0000084079,0.00028886998,0.000016573309,0.9870991,0.000007901469,0.0012244886,0.004297765],"study_design_scores_gemma":[0.00076405023,0.00010787043,0.64087856,0.00020348415,0.000020511678,0.0008876183,0.00011040311,0.00016142262,0.34522095,0.0002973223,0.011163276,0.00018454912],"about_ca_topic_score_codex":0.00015570704,"about_ca_topic_score_gemma":0.0012328752,"teacher_disagreement_score":0.6418781,"about_ca_system_score_codex":0.00012223236,"about_ca_system_score_gemma":0.000013396883,"threshold_uncertainty_score":0.99486995},"labels":[],"label_agreement":null},{"id":"W2295377907","doi":"10.1038/ismej.2016.20","title":"Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":180,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"University of California, Davis; University of Connecticut","keywords":"Biology; Verrucomicrobia; Stable-isotope probing; Planctomycetes; Thaumarchaeota; Archaea; Actinobacteria; Prochlorococcus; Euryarchaeota; Microbial population biology; Ecology; Botany; Bacteria; Synechococcus; Microorganism; 16S ribosomal RNA; Cyanobacteria; Genetics","score_opus":0.03446447654448718,"score_gpt":0.25534972216528495,"score_spread":0.22088524562079778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2295377907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99499625,0.0000115193225,0.000035126795,0.0045993193,0.000036830865,0.00013359527,0.0000019709746,0.000002376478,0.00018300749],"genre_scores_gemma":[0.9996336,0.00003488795,0.000038629027,0.00020644539,0.00001576252,0.0000010409613,4.1103345e-7,0.0000030035962,0.00006620814],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988564,0.00072559813,0.00014346764,0.000055873043,0.000069241665,0.00014938069],"domain_scores_gemma":[0.9993497,0.00035116996,0.000112144866,0.0001643731,0.000004259432,0.00001834674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011104455,0.000061193816,0.00008218992,0.00001133497,0.00041970584,0.000012629349,0.00046540945,0.000033730455,0.00061659655],"category_scores_gemma":[0.00005872927,0.000021159747,0.000026750566,0.0000724468,0.00051616057,0.00007795334,0.00021627352,0.0003087519,0.0000107067435],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006886142,0.00003702526,0.0137420725,0.000002000032,0.000016123964,0.000002367496,0.007453452,0.000027840495,0.97411406,0.00016967404,0.00037147384,0.003995019],"study_design_scores_gemma":[0.00063971925,0.00013822404,0.9663926,0.000068107045,0.000015525839,0.00009055852,0.00321248,0.000041182222,0.0044209394,0.023675065,0.0012108108,0.00009483154],"about_ca_topic_score_codex":0.00013538552,"about_ca_topic_score_gemma":0.0005311963,"teacher_disagreement_score":0.9696931,"about_ca_system_score_codex":0.000024693842,"about_ca_system_score_gemma":0.000006818076,"threshold_uncertainty_score":0.67512995},"labels":[],"label_agreement":null},{"id":"W2301954100","doi":"10.1038/ismej.2015.239","title":"Nearing the cold-arid limits of microbial life in permafrost of an upper dry valley, Antarctica","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; University of Ottawa; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University; Ames Research Center; National Aeronautics and Space Administration; National Science Foundation","keywords":"Permafrost; Arid; Arctic; Geomicrobiology; Soil water; Physical geography; Microbial ecology; Biomass (ecology); Microorganism; Ecology; Environmental science; Hydrology (agriculture); Geology; Biology; Geography; Bacteria","score_opus":0.01802820609599486,"score_gpt":0.2549241023471947,"score_spread":0.23689589625119983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2301954100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99487036,0.000037176833,0.000030245948,0.0041597504,0.00008018973,0.00008421954,0.000015286536,0.0000020406849,0.00072073634],"genre_scores_gemma":[0.999155,0.00012905007,0.00014548619,0.00024091484,0.000081116574,0.000001221351,2.8220245e-7,0.0000069254725,0.00024001097],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99888134,0.0002419433,0.00023413361,0.000087427514,0.00023955762,0.0003155939],"domain_scores_gemma":[0.9994113,0.00016069421,0.00010624285,0.00019497264,0.00001022154,0.00011659979],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011254793,0.0000641108,0.00012424345,0.000030264811,0.00015177355,0.000018156192,0.0005386725,0.000038948914,0.0020586462],"category_scores_gemma":[0.00015548887,0.000028767594,0.000054891847,0.00008899754,0.0004312926,0.00019076088,0.00019942319,0.0002673467,0.00008451713],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001297953,0.00010116545,0.21072754,0.0000025076538,0.00001613812,0.0000069391876,0.00078271254,0.000089777066,0.7849235,0.000037405636,0.00084214605,0.002340386],"study_design_scores_gemma":[0.00080794975,0.00036477228,0.96965235,0.000029857963,0.000009341542,0.00011877662,0.00022730473,0.00019487787,0.026027836,0.00043583987,0.002057585,0.00007351033],"about_ca_topic_score_codex":0.00039796493,"about_ca_topic_score_gemma":0.0007510015,"teacher_disagreement_score":0.7589248,"about_ca_system_score_codex":0.00007821092,"about_ca_system_score_gemma":0.00005735936,"threshold_uncertainty_score":0.9988536},"labels":[],"label_agreement":null},{"id":"W2324475251","doi":"10.1038/ismej.2008.18","title":"Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Swedish Foundation for International Cooperation in Research and Higher Education","keywords":"Lytic cycle; Biology; Groundwater; Bacteriophage; Virus; Geomicrobiology; Abundance (ecology); Microorganism; BK virus; Microbiology; Virology; Ecology; Bacteria; Geology; Paleontology; Gene; Escherichia coli; Kidney","score_opus":0.026946300549087067,"score_gpt":0.243115196107452,"score_spread":0.21616889555836494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2324475251","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99769413,0.000024616766,0.000114558105,0.0011665068,0.00035236886,0.00008245182,0.000013190657,0.000004655783,0.0005475098],"genre_scores_gemma":[0.9976353,0.000030107532,0.00012584547,0.0014052795,0.00010261537,0.0000023347773,3.2452306e-7,0.000009328451,0.0006888737],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992921,0.00009684086,0.00020629099,0.00009026524,0.00014840564,0.00016614157],"domain_scores_gemma":[0.9996319,0.000035033652,0.00008574542,0.000181986,0.000010789387,0.00005455278],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000116327334,0.00008229244,0.00010206957,0.000020648338,0.00024675822,0.00003915536,0.00036914845,0.000028951848,0.0023442544],"category_scores_gemma":[0.000017760729,0.000044439115,0.00006455939,0.00014600603,0.00006897644,0.00019769826,0.00013003053,0.00026296647,0.0004634],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000276681,0.00008681554,0.026443353,8.3885817e-7,0.000018136763,0.000015339341,0.0030236964,0.00040763928,0.96173584,0.000002821236,0.007838616,0.00039926046],"study_design_scores_gemma":[0.00019920558,0.000037028287,0.9418922,0.000029773126,0.000015238081,0.00012753964,0.00017832314,0.000015075634,0.037832573,0.00012566135,0.019468036,0.00007931814],"about_ca_topic_score_codex":0.0018429874,"about_ca_topic_score_gemma":0.001632797,"teacher_disagreement_score":0.9239032,"about_ca_system_score_codex":0.000113102265,"about_ca_system_score_gemma":0.000016721315,"threshold_uncertainty_score":0.99856776},"labels":[],"label_agreement":null},{"id":"W2324897069","doi":"10.1038/ismej.2016.37","title":"Cigarette smoking and the oral microbiome in a large study of American adults","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":581,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Cancer Institute; U.S. Department of Veterans Affairs; National Institutes of Health; American Cancer Society","keywords":"Oral Microbiome; Capnocytophaga; Microbiome; Metagenomics; Proteobacteria; Biology; Firmicutes; Dysbiosis; Peptostreptococcus; Bacteroidetes; Physiology; Microbiology; 16S ribosomal RNA; Genetics; Gene; Bacteria; Anaerobic bacteria","score_opus":0.014287940628999964,"score_gpt":0.299547238731444,"score_spread":0.28525929810244405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2324897069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973785,0.0003246659,0.000019219116,0.0018432988,0.00017287133,0.00017664373,0.000025467381,0.000004338108,0.00005497634],"genre_scores_gemma":[0.99928266,0.00008906642,0.000006397295,0.00011542804,0.00007614357,0.000003570164,3.7605665e-7,0.000008155476,0.00041818223],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984976,0.0007194655,0.00027534054,0.0001124399,0.00012457125,0.00027056405],"domain_scores_gemma":[0.9993382,0.00021477156,0.0001664532,0.0001914553,0.00005511821,0.000034019176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016410004,0.00008578218,0.00023674672,0.00008306386,0.00019881147,0.000045121957,0.00035342408,0.00003836855,0.00026591768],"category_scores_gemma":[0.00008420404,0.000034089542,0.000052119325,0.00017535876,0.00048093498,0.0000757856,0.00016694829,0.00042210586,0.00001251959],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021110417,0.0003678533,0.9346917,0.0000112732505,0.0003608573,0.0001931949,0.007978933,9.197639e-7,0.025521332,0.00012289926,0.002465264,0.026174687],"study_design_scores_gemma":[0.010727822,0.0003635545,0.98133636,0.00012972498,0.000038523536,0.00082109874,0.0041667772,0.0000071304016,0.00076326693,0.00019532262,0.0013454055,0.00010503471],"about_ca_topic_score_codex":0.0003945231,"about_ca_topic_score_gemma":0.0021472056,"teacher_disagreement_score":0.046644595,"about_ca_system_score_codex":0.000025429596,"about_ca_system_score_gemma":0.000025436004,"threshold_uncertainty_score":0.2911612},"labels":[],"label_agreement":null},{"id":"W2335786001","doi":"10.1038/ismej.2015.249","title":"High-resolution phylogenetic microbial community profiling","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":322,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; University of British Columbia; Joint Genome Institute; Tula Foundation; Canadian Institute for Advanced Research; U.S. Department of Energy","keywords":"Biology; Phylogenetic tree; Microbial population biology; Metagenomics; Community structure; 16S ribosomal RNA; Amplicon; Phylogenetics; In silico; Computational biology; Ribosomal RNA; Sanger sequencing; Evolutionary biology; Genetics; Ecology; DNA sequencing; Gene; Bacteria; Polymerase chain reaction","score_opus":0.017081075299184477,"score_gpt":0.22478508128804667,"score_spread":0.20770400598886218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2335786001","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958679,0.000017341301,0.0007694447,0.0021845787,0.00031879227,0.000077181976,0.000005075218,0.000013235067,0.0007464306],"genre_scores_gemma":[0.99822515,0.000036642236,0.00059107656,0.000602438,0.00014941106,0.0000017056012,0.0000020862194,0.0000070875267,0.00038438212],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981397,0.0012993002,0.00017265788,0.00006314412,0.0000704995,0.00025472662],"domain_scores_gemma":[0.9992934,0.00022156801,0.00011534043,0.0003079583,0.0000095464975,0.000052194624],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009986869,0.00008991905,0.00010634199,0.000016168975,0.0012833895,0.000015603573,0.0006347738,0.0000741395,0.004667496],"category_scores_gemma":[0.000052166954,0.000046844943,0.000053922395,0.00006675201,0.00043745144,0.00008319136,0.00034525333,0.0006467953,0.0007590786],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045042874,0.00006440308,0.0024527465,0.0000010493326,0.000014199412,0.000001163968,0.0003100815,0.00032819778,0.98435664,0.0001263526,0.0093596885,0.0029404587],"study_design_scores_gemma":[0.003938572,0.0013397438,0.5919513,0.00010442797,0.00014151252,0.0017813944,0.00055572833,0.00012824353,0.23740746,0.119570844,0.04217913,0.0009016505],"about_ca_topic_score_codex":0.00023418659,"about_ca_topic_score_gemma":0.0005297815,"teacher_disagreement_score":0.74694914,"about_ca_system_score_codex":0.000111429865,"about_ca_system_score_gemma":0.000014791869,"threshold_uncertainty_score":0.99624234},"labels":[],"label_agreement":null},{"id":"W2336434671","doi":"10.1038/ismej.2016.51","title":"Temperate phages enhance pathogen fitness in chronic lung infection","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Medical Research Council; Cystic Fibrosis Canada; University of Liverpool; Wellcome Trust","keywords":"Biology; Lysogenic cycle; Microbiology; Prophage; Lysogen; Temperateness; Pseudomonas aeruginosa; Bacteriophage; Lung; In vivo; Pathogen; Virology; Cystic fibrosis; Immunology; Bacteria; Genetics; Gene; Escherichia coli","score_opus":0.006653073909218346,"score_gpt":0.2572094031069926,"score_spread":0.25055632919777426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2336434671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954876,0.00007181599,0.0017834955,0.0015931032,0.00038356867,0.00007305946,0.0000037419982,0.000010797634,0.00059283787],"genre_scores_gemma":[0.995961,0.0005583321,0.000025309799,0.00010454962,0.00021450972,0.000005424752,3.2948395e-7,0.000007982358,0.003122577],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993816,0.00008128362,0.00016152483,0.00010138083,0.00008058651,0.0001936187],"domain_scores_gemma":[0.9997293,0.000028055738,0.000084468105,0.00011205343,0.0000060571156,0.00004007822],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002625947,0.00007705079,0.00007059537,0.000023034694,0.00019143788,0.000052652365,0.000136794,0.00003144063,0.0053575863],"category_scores_gemma":[0.000013283776,0.00003971264,0.00004232327,0.0000951923,0.00006928586,0.00040586983,0.00006568989,0.0001829582,0.00048372816],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005975984,0.000016047563,0.002648927,0.0000011435495,0.000004842674,0.0000046094606,0.00013091965,0.00024583962,0.9746754,0.0000029770295,0.0011422281,0.021121075],"study_design_scores_gemma":[0.0007913165,0.0001074688,0.817543,0.00021301274,0.000025799018,0.0007354273,0.00003533143,0.000463601,0.14282781,0.00035001268,0.03662438,0.00028279301],"about_ca_topic_score_codex":0.00019385402,"about_ca_topic_score_gemma":0.00042973502,"teacher_disagreement_score":0.8318476,"about_ca_system_score_codex":0.0005044163,"about_ca_system_score_gemma":0.000018039278,"threshold_uncertainty_score":0.99555165},"labels":[],"label_agreement":null},{"id":"W2378140384","doi":"10.1038/ismej.2016.78","title":"Evaluating community–environment relationships along fine to broad taxonomic resolutions reveals evolutionary forces underlying community assembly","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ocean Networks Canada Society; University of Victoria","funders":"National Yang-Ming University; Ministry of Science and Technology, Taiwan; National Center for Theoretical Sciences","keywords":"Biology; Ecological niche; Taxonomic rank; Niche; Taxon; Ecology; Phylogenetic tree; Community structure; Conservatism; Phylum; Niche differentiation; Community; Evolutionary biology; Habitat; Paleontology","score_opus":0.19139964568814424,"score_gpt":0.3397492499711902,"score_spread":0.14834960428304597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2378140384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98686314,0.000059913065,0.003706015,0.0065435893,0.00012091121,0.00029006778,0.00001686586,0.000028310922,0.0023711764],"genre_scores_gemma":[0.99498147,0.000038668455,0.003273597,0.00057686423,0.0000659705,0.00002191662,0.000010621138,0.000016351549,0.0010145268],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.98972166,0.00901984,0.0004999559,0.00012012838,0.00020672055,0.0004316859],"domain_scores_gemma":[0.99559206,0.00307056,0.00030058748,0.000859211,0.000019006553,0.00015855386],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0067821057,0.00018246136,0.00021621783,0.000067075845,0.008478283,0.000037475038,0.001179484,0.00012636653,0.0027309954],"category_scores_gemma":[0.0006781084,0.00012147056,0.00010800591,0.00015652277,0.0004775852,0.0003299396,0.0010907005,0.0022803396,0.0011217191],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032097084,0.0008351889,0.08430396,0.000016150472,0.00022913107,0.0000044737053,0.010483868,0.064618796,0.6796218,0.0014112213,0.14235038,0.015804036],"study_design_scores_gemma":[0.00065183284,0.00055244024,0.95506597,0.00010585001,0.000064844295,0.00024322075,0.001643953,0.00036935345,0.00018094023,0.033182316,0.0076462044,0.00029308154],"about_ca_topic_score_codex":0.0012446393,"about_ca_topic_score_gemma":0.0038167688,"teacher_disagreement_score":0.870762,"about_ca_system_score_codex":0.00073568075,"about_ca_system_score_gemma":0.000039938775,"threshold_uncertainty_score":0.999656},"labels":[],"label_agreement":null},{"id":"W2401911887","doi":"10.1038/ismej.2015.215","title":"Selective consumption and metabolic allocation of terrestrial and algal carbon determine allochthony in lake bacteria","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; University of Ottawa; National Science Foundation","keywords":"Bacterioplankton; Biomass (ecology); Biology; Algae; Carbon cycle; Dissolved organic carbon; Ecology; Carbon dioxide; Respiration; Productivity; Carbon fibers; Environmental chemistry; Heterotroph; Substrate (aquarium); Phytoplankton; Ecosystem; Bacteria; Nutrient; Botany; Chemistry","score_opus":0.026974790874143614,"score_gpt":0.2522874234971465,"score_spread":0.22531263262300288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2401911887","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999356,0.000072716175,0.0000072925623,0.00020518301,0.00009470874,0.00007206289,0.0000015504266,0.0000019325305,0.00018860392],"genre_scores_gemma":[0.9996686,0.00011107926,0.00010158732,0.000053427622,0.00004271412,0.000001313549,0.0000023344148,0.0000025742252,0.000016351192],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992993,0.0003687239,0.00013743562,0.000057347283,0.000046619476,0.00009058208],"domain_scores_gemma":[0.99972785,0.00006585547,0.00009596594,0.00006516141,0.000004354239,0.000040835206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005666552,0.000053490687,0.00011360098,0.000023519084,0.0000569983,0.000008287088,0.000085846696,0.000049054728,0.00010163681],"category_scores_gemma":[0.000045021377,0.000038461807,0.000009813195,0.000042356063,0.00019943935,0.000072919545,0.000081169695,0.00020512985,0.0000026407097],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076406193,0.00012185826,0.29117677,0.000005101161,0.000048655416,0.000004202182,0.007381783,0.0002295152,0.6906858,0.000044930097,0.00057260075,0.008964701],"study_design_scores_gemma":[0.001032296,0.000168279,0.99171257,0.0000078276635,0.000022885584,0.0001700179,0.00007367662,0.0005938711,0.003475626,0.0016822272,0.0009959588,0.000064785076],"about_ca_topic_score_codex":0.00024699574,"about_ca_topic_score_gemma":0.0064725303,"teacher_disagreement_score":0.7005358,"about_ca_system_score_codex":0.000018288543,"about_ca_system_score_gemma":0.0000147872515,"threshold_uncertainty_score":0.3611824},"labels":[],"label_agreement":null},{"id":"W2417593230","doi":"10.1038/ismej.2016.79","title":"Prophages mediate defense against phage infection through diverse mechanisms","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":542,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Canadian Institutes of Health Research; Wellcome Trust; Sight Research UK; Royal Society","keywords":"Prophage; Superinfection; Biology; Lysogenic cycle; Temperateness; Microbiology; Pilus; Host (biology); Population; Bacteriophage; Genetics; Escherichia coli; Virus; Gene","score_opus":0.014204819370342053,"score_gpt":0.2356565934542723,"score_spread":0.22145177408393027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2417593230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97791946,0.000019923596,0.013217264,0.0023467976,0.0011635834,0.00013015082,0.000010222544,0.00004053704,0.0051520593],"genre_scores_gemma":[0.9952525,0.00051675196,0.0005845979,0.0006672231,0.00023139712,0.0000044663702,6.252581e-7,0.000014068495,0.0027283703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991737,0.00009789031,0.00018091049,0.00013177,0.0001703771,0.00024537955],"domain_scores_gemma":[0.999557,0.00004192574,0.0001523162,0.00016080643,0.000012113952,0.00007581219],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00026710084,0.00011766992,0.00009268947,0.000018356674,0.00047900138,0.00007368957,0.00018797709,0.000046169305,0.0048342403],"category_scores_gemma":[0.00003058828,0.000056778536,0.00010327713,0.00008652026,0.00012613708,0.00066765,0.00014519227,0.00021084472,0.0019267303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018633109,0.000051077972,0.00020152495,0.0000011456118,0.000024030212,0.00002538107,0.00052390015,0.00005057604,0.96702105,0.0000852574,0.006638895,0.025358548],"study_design_scores_gemma":[0.004101191,0.00076306716,0.19007885,0.00028500485,0.00032339335,0.0034535748,0.0007533835,0.00016026507,0.5075434,0.031731464,0.2596038,0.0012026402],"about_ca_topic_score_codex":0.00010217659,"about_ca_topic_score_gemma":0.00011162668,"teacher_disagreement_score":0.45947766,"about_ca_system_score_codex":0.00016599675,"about_ca_system_score_gemma":0.000009599604,"threshold_uncertainty_score":0.9988504},"labels":[],"label_agreement":null},{"id":"W2472420902","doi":"10.1038/ismej.2016.101","title":"The ‘other’ coral symbiont: <i>Ostreobium</i> diversity and distribution","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"FP7 People: Marie-Curie Actions; Tula Foundation; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Symbiodinium; Zooxanthellae; Phylogenetic diversity; Ulvophyceae; Coral; Lineage (genetic); Ecology; Phylogenetics; Genetic diversity; Coral reef; Evolutionary biology; Botany; Phylogenetic tree; Symbiosis; Chlorophyta; Algae; Gene; Genetics; Bacteria","score_opus":0.009126101270405595,"score_gpt":0.17896295666529677,"score_spread":0.16983685539489118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2472420902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98273796,0.000116056704,0.00034950956,0.0151098035,0.00027614855,0.00006261693,0.000011561158,0.000009730752,0.0013266194],"genre_scores_gemma":[0.99676204,0.00027504208,0.0000030427182,0.000096075186,0.00010994805,9.707182e-7,1.4390673e-7,0.0000021177311,0.0027505935],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99948686,0.000055132034,0.000086631975,0.00006723516,0.00015202256,0.00015213725],"domain_scores_gemma":[0.9997078,0.00008258078,0.0000685263,0.000086899905,0.000007138516,0.000047028934],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00037166956,0.000058891594,0.00005463071,0.0000023673374,0.0024127492,0.000031838346,0.00017308952,0.000013751631,0.00012726693],"category_scores_gemma":[0.000025611154,0.00002068544,0.000031969535,0.000035480545,0.00019188508,0.00010714354,0.0009730199,0.00007755768,0.00009238213],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007757036,0.000031405016,0.76747876,0.0000020593009,0.000044966768,0.000006700096,0.00074843713,0.000001560517,0.0016299877,0.001019061,0.08495411,0.14400539],"study_design_scores_gemma":[0.0003804365,0.00007708484,0.78085434,0.0000177574,0.000023393188,0.00015946006,0.00022178265,0.000022769736,0.00014429264,0.0054787598,0.2125255,0.000094409574],"about_ca_topic_score_codex":0.0002535468,"about_ca_topic_score_gemma":0.0003510963,"teacher_disagreement_score":0.14391097,"about_ca_system_score_codex":0.00007226397,"about_ca_system_score_gemma":0.00000235068,"threshold_uncertainty_score":0.998886},"labels":[],"label_agreement":null},{"id":"W2519341718","doi":"10.1038/ismej.2016.112","title":"Ubiquitous marine bacterium inhibits diatom cell division","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Gordon and Betty Moore Foundation","keywords":"Thalassiosira pseudonana; Diatom; Biogeochemistry; Biology; Frustule; Biogeochemical cycle; Plastid; Botany; Ecology; Chloroplast; Phytoplankton; Biochemistry; Gene; Nutrient","score_opus":0.004455191958570748,"score_gpt":0.18144891019646786,"score_spread":0.1769937182378971,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2519341718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883944,0.000009193434,0.0001662376,0.0027652597,0.00031585357,0.000049011243,0.0000024133274,0.0000114464765,0.008286198],"genre_scores_gemma":[0.99642605,0.00008895213,0.00007288561,0.00074310263,0.00012791652,9.4721145e-7,0.0000012359544,0.0000075217945,0.0025314142],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991357,0.00030039425,0.00015329462,0.00008477982,0.000085184925,0.00024065573],"domain_scores_gemma":[0.99943024,0.00015578048,0.00010427123,0.00023057725,0.0000062413064,0.000072896786],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00044338458,0.00008796766,0.00009975513,0.000014937168,0.00040801306,0.000017315277,0.00044318332,0.00006320876,0.026616078],"category_scores_gemma":[0.000020290085,0.00004209755,0.000053111777,0.000055399505,0.00018534383,0.00012955141,0.00065775454,0.00031483735,0.001936389],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004781621,0.00010194699,0.020202812,0.0000017134189,0.000009176312,0.0000072019548,0.00041221862,0.00003927321,0.9241995,0.000025993944,0.0368666,0.01808572],"study_design_scores_gemma":[0.0012168706,0.00047441592,0.7854013,0.000025216103,0.000026268764,0.0003298462,0.000057461242,0.000021327498,0.070101224,0.01651711,0.12550972,0.00031926003],"about_ca_topic_score_codex":0.000044473225,"about_ca_topic_score_gemma":0.00014905639,"teacher_disagreement_score":0.8540983,"about_ca_system_score_codex":0.00006327579,"about_ca_system_score_gemma":0.000009463033,"threshold_uncertainty_score":0.9988407},"labels":[],"label_agreement":null},{"id":"W2548512960","doi":"10.1038/ismej.2016.124","title":"Metabolic and physiological interdependencies in the <i>Bathymodiolus azoricus</i> symbiosis","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine Biology and Ecology Research","field":"Earth and Planetary Sciences","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Vienna Science and Technology Fund; Max-Planck-Gesellschaft; Deutscher Akademischer Austauschdienst","keywords":"Biology; Symbiosis; Gammaproteobacteria; Chemosynthesis; Host (biology); Sulfur metabolism; Endosymbiosis; Ecology; Hydrothermal vent; Biochemistry; Metabolism; Bacteria; Gene; Genetics","score_opus":0.03379890833984195,"score_gpt":0.24345300780317372,"score_spread":0.20965409946333177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2548512960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870591,0.0010498231,0.000007593925,0.009963661,0.00016786941,0.00006388883,0.0000036792617,0.0000051285097,0.0016792318],"genre_scores_gemma":[0.99706185,0.0015840704,0.000011218977,0.0008143207,0.00022684113,0.0000011423446,7.918261e-7,8.5378576e-7,0.0002988923],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988071,0.0005305837,0.00014290225,0.000106734005,0.00012512178,0.0002875616],"domain_scores_gemma":[0.9991987,0.0005777464,0.00004577525,0.00011086333,0.000017171564,0.00004975079],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016970077,0.00007686797,0.00012764648,0.000041216776,0.0003077734,0.000042416046,0.0004541221,0.00006580831,0.0014106613],"category_scores_gemma":[0.00014328219,0.000023381031,0.000040609786,0.00009228215,0.00029284102,0.00010632777,0.00003993381,0.00035649087,0.00011966173],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056878922,0.000013258783,0.96327543,0.0000011821145,0.000022958073,0.00002394602,0.00034338288,0.0000037286165,0.00028389087,0.00024154248,0.0025326079,0.033201188],"study_design_scores_gemma":[0.00019993017,0.00013155231,0.9899826,0.000004478494,0.00000691658,0.00051943137,0.0002826974,0.00004747759,0.000034663717,0.0058982717,0.002844306,0.000047689704],"about_ca_topic_score_codex":0.000120148194,"about_ca_topic_score_gemma":0.00067938876,"teacher_disagreement_score":0.0331535,"about_ca_system_score_codex":0.0000020299867,"about_ca_system_score_gemma":0.000023934314,"threshold_uncertainty_score":0.9995022},"labels":[],"label_agreement":null},{"id":"W2559205772","doi":"10.1038/ismej.2016.158","title":"Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring <i>Dehalobacter</i> isolates","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Strategic Environmental Research and Development Program; University of Toronto; Ontario Genomics Institute; Government of Canada; U.S. Department of Agriculture; Government of Ontario; National Institute of Environmental Health Sciences; Ontario Genomics; Genome Canada; U.S. Department of Defense","keywords":"Corrinoid; Biology; Biochemistry; Biosynthesis; Cofactor; Mutase; Isobutanol; Operon; Enzyme; Methyltransferase; Escherichia coli; Methylation","score_opus":0.00934552296110537,"score_gpt":0.24135578194577448,"score_spread":0.2320102589846691,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559205772","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959713,0.0015557589,0.00058497034,0.0010103631,0.00029046906,0.00009943039,0.000006440593,0.000008883162,0.00047236308],"genre_scores_gemma":[0.99788386,0.00032770666,0.00015130387,0.0007510185,0.00027939933,0.0000098950695,0.000005952207,0.000016656575,0.0005741912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990029,0.00011495064,0.0003099821,0.00016769076,0.000115926276,0.00028857507],"domain_scores_gemma":[0.99946785,0.00002013186,0.00016615757,0.00021983014,0.00004870979,0.00007729938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003671393,0.00014251858,0.00014234714,0.0000481409,0.00013111695,0.000044299126,0.00024940522,0.00007658037,0.000060808445],"category_scores_gemma":[0.00008290339,0.00008209129,0.000091511465,0.00006846794,0.00008100991,0.000022997085,0.00007537926,0.0001114074,0.00002134585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019987703,0.00004391622,0.0047568535,0.0000023176553,0.000016116244,0.0000035931812,0.00008511985,0.000019470985,0.991887,0.00007649672,0.0012933523,0.0016159279],"study_design_scores_gemma":[0.004666072,0.00045108973,0.12415313,0.0000917146,0.000025965275,0.00027190417,0.0003981465,0.00004152186,0.84994787,0.0012202852,0.018296402,0.00043592002],"about_ca_topic_score_codex":0.000013398428,"about_ca_topic_score_gemma":0.000009662953,"teacher_disagreement_score":0.1419391,"about_ca_system_score_codex":0.000022049568,"about_ca_system_score_gemma":0.00005480068,"threshold_uncertainty_score":0.33475855},"labels":[],"label_agreement":null},{"id":"W2559993150","doi":"10.1038/ismej.2016.168","title":"Strategies to improve reference databases for soil microbiomes","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Argonne National Laboratory; U.S. Department of Energy; Biological and Environmental Research; Office of Science; National Science Foundation","keywords":"Biology; Microbiome; Computational biology; Database; Bioinformatics; Computer science","score_opus":0.029208243059375857,"score_gpt":0.31692982169689016,"score_spread":0.2877215786375143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559993150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95996183,0.00057597767,0.028210701,0.009882876,0.00041410374,0.00024243713,0.00029387386,0.000008427107,0.00040978426],"genre_scores_gemma":[0.9922449,0.00065061165,0.0021213037,0.0012013362,0.0007444669,0.000011265979,0.00002176813,0.000018047742,0.002986302],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993499,0.000033783872,0.00015729536,0.00015026817,0.00004693071,0.00026182045],"domain_scores_gemma":[0.99948055,0.000021914888,0.000077903525,0.00024053501,0.000093352784,0.000085766864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027264468,0.00009636345,0.000088179266,0.000025530695,0.00018945236,0.000051205618,0.00025197,0.00004355589,0.00003554197],"category_scores_gemma":[0.000029874134,0.00004755079,0.0000539381,0.00002802232,0.00004889036,0.000007199715,0.00007805759,0.00006642528,0.000024994875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006840388,0.000012735863,0.000027289663,0.000007494759,0.00002031826,3.9805033e-7,0.000031348456,0.0000014995043,0.9506549,0.00030280015,0.04471573,0.004157059],"study_design_scores_gemma":[0.0005793298,0.00038270684,0.00087124255,0.000036331126,0.000016062551,0.00012131207,0.00025374733,6.8166577e-7,0.5289629,0.0003857249,0.4682547,0.00013525077],"about_ca_topic_score_codex":0.000013792129,"about_ca_topic_score_gemma":0.00008093536,"teacher_disagreement_score":0.42353895,"about_ca_system_score_codex":0.000014694955,"about_ca_system_score_gemma":0.00022320362,"threshold_uncertainty_score":0.1939065},"labels":[],"label_agreement":null},{"id":"W2560515330","doi":"10.1038/ismej.2016.170","title":"Identification of the fitness determinants of budding yeast on a natural substrate","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Biology; Yeast; Allantoin; Saccharomyces cerevisiae; Botany; Deciduous; Maple; Obligate; Ecology; Genetics; Biochemistry","score_opus":0.02497779946246656,"score_gpt":0.251284384586766,"score_spread":0.22630658512429944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560515330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822974,0.0000100037705,0.0000019553877,0.0015575825,0.000120496305,0.000028331195,0.0000070610504,0.000001870234,0.000042958334],"genre_scores_gemma":[0.99911463,0.000015413747,0.0000011839606,0.000041510157,0.000058685942,3.9382564e-7,2.1744118e-7,2.3810112e-7,0.0007677259],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994207,0.000100555815,0.00020621375,0.000045389523,0.00016355483,0.000063558444],"domain_scores_gemma":[0.99954194,0.000075854696,0.0002722873,0.000037664307,0.00005705912,0.000015200256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002717277,0.00003728752,0.00006671251,0.0000065672166,0.00014265423,0.00001638073,0.00020742584,0.000015161648,0.00013239204],"category_scores_gemma":[0.000037509308,0.0000070457263,0.00008931792,0.00011998478,0.000061447405,0.000056436103,0.000012534037,0.000052104886,0.0000057274724],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018154191,0.000014892233,0.0063458798,8.781458e-7,0.000008174041,2.5909208e-7,0.000094886025,0.0000084563,0.972622,0.00006979204,0.00003671086,0.020779952],"study_design_scores_gemma":[0.00007905271,0.00002836827,0.6787068,0.00003722392,0.000016147636,0.000015116961,0.0003863376,0.000105999236,0.32010773,0.00044933683,0.000038752405,0.0000291119],"about_ca_topic_score_codex":0.000007596498,"about_ca_topic_score_gemma":0.000054075343,"teacher_disagreement_score":0.67236096,"about_ca_system_score_codex":0.000007854761,"about_ca_system_score_gemma":0.0000034636541,"threshold_uncertainty_score":0.14496002},"labels":[],"label_agreement":null},{"id":"W2576407813","doi":"10.1038/ismej.2016.175","title":"Impacts of chemical gradients on microbial community structure","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Max-Planck-Gesellschaft","keywords":"Biology; Microbial population biology; Microbial ecology; Community structure; Ecology; Bacteria; Genetics","score_opus":0.017898110825252726,"score_gpt":0.26088942615877314,"score_spread":0.24299131533352042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2576407813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971712,0.0000033769145,0.0000016184183,0.0007536512,0.00024187456,0.00004670781,0.000013260859,0.000003082946,0.0017652326],"genre_scores_gemma":[0.9993846,0.0000055666947,0.0000517488,0.00043989334,0.000072054994,1.648332e-7,0.0000032270164,0.000004988359,0.00003779416],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991257,0.00041757943,0.00014428866,0.00004795168,0.00007782728,0.00018660552],"domain_scores_gemma":[0.9989367,0.000104463965,0.00026909725,0.00061991945,0.0000081194485,0.000061667255],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00045956837,0.00008615561,0.00013873666,0.000011341818,0.0014044135,0.000028960554,0.0013633608,0.00008530317,0.0026291953],"category_scores_gemma":[0.000118289114,0.00005411254,0.000065291715,0.000020331203,0.0006907508,0.00008907901,0.00047479206,0.0012513059,0.00006355072],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011411736,0.00010943642,0.009137504,0.0000025399981,0.000023572258,0.0000015989297,0.0012261812,0.00004367133,0.97550243,0.000049353257,0.0130579285,0.0007316427],"study_design_scores_gemma":[0.0010856524,0.0004269575,0.7763814,0.0000381712,0.00003662232,0.00036097228,0.00012028174,0.000016273061,0.1959729,0.022846568,0.0025241433,0.00019009282],"about_ca_topic_score_codex":0.0006613032,"about_ca_topic_score_gemma":0.00063952536,"teacher_disagreement_score":0.7795296,"about_ca_system_score_codex":0.000053982374,"about_ca_system_score_gemma":0.000010638955,"threshold_uncertainty_score":0.99989563},"labels":[],"label_agreement":null},{"id":"W2583691729","doi":"10.1038/ismej.2016.205","title":"Archaea and bacteria mediate the effects of native species root loss on fungi during plant invasion","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Archaea; Botany; Bacteria; Bromus inermis; Ecology; Poaceae","score_opus":0.014272061828663887,"score_gpt":0.20781325278020468,"score_spread":0.1935411909515408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2583691729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99566853,0.00019079976,5.362013e-7,0.0027388143,0.00051649875,0.00008621287,0.00014296907,0.000004105227,0.00065154664],"genre_scores_gemma":[0.9965737,0.0024720405,0.0000024652775,0.00004763755,0.0005410772,0.0000015482273,0.0000098810615,5.041472e-7,0.00035116804],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994395,0.000103817496,0.00011387036,0.00006900712,0.00014945099,0.00012437218],"domain_scores_gemma":[0.9976665,0.0020038472,0.00019737646,0.000058615824,0.000025766014,0.00004789371],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002494138,0.00007538245,0.00009956915,0.000007796896,0.0009827226,0.00012518142,0.0003064605,0.000027222586,0.00040553906],"category_scores_gemma":[0.0002707002,0.000017466129,0.000049687143,0.000021985523,0.000037697868,0.00009869623,0.00008541225,0.00024337973,0.000020466296],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002688101,0.00004124156,0.04077663,0.00001792995,0.000055779536,0.00004284723,0.0013990392,0.000002906614,0.9489384,0.0007997628,0.0019466406,0.0057099573],"study_design_scores_gemma":[0.00008502111,0.00026512184,0.93777734,0.0002694898,0.000019293053,0.0003994814,0.00022629842,0.000018854107,0.055450924,0.001490209,0.0039224788,0.00007546595],"about_ca_topic_score_codex":0.0000974044,"about_ca_topic_score_gemma":0.00019808514,"teacher_disagreement_score":0.89700073,"about_ca_system_score_codex":0.00000804183,"about_ca_system_score_gemma":0.0000036411493,"threshold_uncertainty_score":0.7558407},"labels":[],"label_agreement":null},{"id":"W2587888759","doi":"10.1038/ismej.2016.206","title":"Host specificity of <i>Symbiodinium</i> variants revealed by an ITS2 metahaplotype approach","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"York University; New York University Abu Dhabi","keywords":"Symbiodinium; Biology; Acropora; Coral; Evolutionary biology; Ecology; Scleractinia; Dominance (genetics); Clade; Cnidaria; Phylogenetics; Symbiosis; Genetics; Gene","score_opus":0.028325728333027638,"score_gpt":0.24095701548529402,"score_spread":0.2126312871522664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587888759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93623745,0.000110116045,0.00031592674,0.0013035116,0.00038912622,0.00015182013,0.000019692034,0.000012976761,0.061459385],"genre_scores_gemma":[0.9957701,0.00014402262,0.00045872803,0.00007192424,0.00018799651,0.000002576889,0.0000010073617,0.0000092870805,0.0033543753],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892616,0.0001042113,0.00026986236,0.00016246126,0.0003129133,0.00022437597],"domain_scores_gemma":[0.99894863,0.000025799149,0.00041462912,0.00049320667,0.00001822823,0.000099519275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092576264,0.00012405268,0.00023616382,0.000011459233,0.00092706125,0.000106693406,0.00082685746,0.0000362785,0.0005084665],"category_scores_gemma":[0.000061407154,0.00007229849,0.00007841793,0.000045416935,0.00021667454,0.00035252358,0.000439383,0.00023517832,0.00010031622],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032724507,0.0012804768,0.530313,0.00005340784,0.00038956286,0.00003088107,0.002732512,0.000071296476,0.1451856,0.0006391106,0.3006364,0.01834049],"study_design_scores_gemma":[0.0006108526,0.00021816461,0.97496367,0.000019107123,0.00008614502,0.00019268908,0.00031799168,0.00039830583,0.0019620452,0.0011959004,0.019793296,0.00024182907],"about_ca_topic_score_codex":0.0005228475,"about_ca_topic_score_gemma":0.00008835883,"teacher_disagreement_score":0.44465068,"about_ca_system_score_codex":0.000041249532,"about_ca_system_score_gemma":0.0000079847205,"threshold_uncertainty_score":0.7130299},"labels":[],"label_agreement":null},{"id":"W2588228709","doi":"10.1038/ismej.2016.192","title":"Cultivation and characterization of <i>Candidatus</i> Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":234,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Oxidizing agent; Candidatus; Wastewater; Ammonia; Environmental chemistry; Bacteria; Waste management; 16S ribosomal RNA; Biochemistry; Genetics","score_opus":0.018875625384278973,"score_gpt":0.2346018403206475,"score_spread":0.2157262149363685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588228709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99925613,0.00002159613,0.000030330282,0.00022735595,0.00012616818,0.00020817855,0.00003281796,0.000014336413,0.00008307937],"genre_scores_gemma":[0.9982243,0.00006560078,0.0012761801,0.000013540009,0.00016335427,0.000008136322,0.00003499972,0.000016101716,0.0001977917],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894184,0.00013843935,0.00026836866,0.00018103713,0.00024940475,0.00022092268],"domain_scores_gemma":[0.9990746,0.000018618262,0.00039007454,0.00039864087,0.000010142674,0.00010797316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002191364,0.00017040857,0.00020400026,0.000028236303,0.00073187874,0.00017837842,0.0002978707,0.000049348386,0.00005626809],"category_scores_gemma":[0.0000038911135,0.0000977689,0.00006225889,0.000026732403,0.00018447443,0.000590802,0.00013354603,0.0000992144,0.00002326462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014702394,0.000083448525,0.027262578,0.000003829652,0.00006307062,0.000016177162,0.004123082,0.000018205044,0.96423995,0.000010625745,0.0000043190284,0.0040276893],"study_design_scores_gemma":[0.0021511721,0.00058604067,0.27828282,0.000118998425,0.00018605913,0.00020120271,0.0010323813,0.0020396053,0.7144529,0.0002948627,0.00043331558,0.00022061198],"about_ca_topic_score_codex":0.002202511,"about_ca_topic_score_gemma":0.00021777253,"teacher_disagreement_score":0.25102022,"about_ca_system_score_codex":0.00018220345,"about_ca_system_score_gemma":0.0000084824915,"threshold_uncertainty_score":0.56290936},"labels":[],"label_agreement":null},{"id":"W2588960210","doi":"10.1038/ismej.2016.197","title":"Syntrophic linkage between predatory <i>Carpediemonas</i> and specific prokaryotic populations","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Max-Planck-Gesellschaft","keywords":"Biology; Verrucomicrobia; Firmicutes; Deltaproteobacteria; Bacteroidetes; Transcriptome; Microbiome; Metagenomics; Ecology; Gammaproteobacteria; Bacteria; Gene; Genetics; 16S ribosomal RNA","score_opus":0.04589486034576998,"score_gpt":0.2697770040942955,"score_spread":0.22388214374852553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588960210","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99311227,0.00009066882,0.00007843795,0.0028959056,0.00027260318,0.000097977514,0.0000067594233,0.000008931976,0.0034364464],"genre_scores_gemma":[0.99854565,0.00012369771,0.000221097,0.00018655794,0.00036385804,0.0000013581856,0.000002918579,0.000007178207,0.0005476923],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99925405,0.00022304124,0.00015283901,0.00009658068,0.000082016515,0.00019147665],"domain_scores_gemma":[0.9992144,0.00007768158,0.00017686954,0.00044801377,0.0000060565358,0.000076976896],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00049719826,0.00008571788,0.00012414728,0.000014113143,0.0025394459,0.000092402224,0.00062750187,0.00007463552,0.0015443007],"category_scores_gemma":[0.00003928351,0.00005872029,0.00003913254,0.00002088558,0.00055237534,0.00021188319,0.0004064996,0.0006234529,0.00019758222],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005661338,0.00012994395,0.88043225,0.000014098539,0.00009498547,0.000033035794,0.0023926639,0.00038819795,0.03235987,0.0010218895,0.06857493,0.014501518],"study_design_scores_gemma":[0.00017087736,0.000053218602,0.96858674,0.000007910819,0.00002233673,0.000093624396,0.000026814307,0.000026020221,0.00006108231,0.014990167,0.015884193,0.000077023695],"about_ca_topic_score_codex":0.000049342227,"about_ca_topic_score_gemma":0.00012299388,"teacher_disagreement_score":0.08815447,"about_ca_system_score_codex":0.000038966933,"about_ca_system_score_gemma":0.000009249256,"threshold_uncertainty_score":0.9993684},"labels":[],"label_agreement":null},{"id":"W2593785112","doi":"10.1038/ismej.2017.7","title":"Seasonal patterns in Arctic prasinophytes and inferred ecology of <i>Bathycoccus</i> unveiled in an Arctic winter metagenome","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Excellence Research Chairs, Government of Canada; Fonds de recherche du Québec – Nature et technologies; ArcticNet; Université Laval","keywords":"Biology; Metagenomics; Arctic; Ecology; Ecotype; Phytoplankton; Evolutionary biology; Gene; Genetics","score_opus":0.017890178317067733,"score_gpt":0.26386836487955656,"score_spread":0.24597818656248882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2593785112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983665,0.000029881778,0.000006239414,0.0011400261,0.00013400028,0.00010128014,0.0000044002563,0.000002083609,0.0002156116],"genre_scores_gemma":[0.99934053,0.00006129438,0.000060674625,0.0004424837,0.000039075745,0.000003442057,0.0000021290657,0.0000065220347,0.000043816734],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99869615,0.00060455984,0.00025793148,0.00012327786,0.00006726518,0.00025084193],"domain_scores_gemma":[0.9991446,0.00019113826,0.00025070846,0.00034249082,0.000010355483,0.00006069718],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00082277344,0.000106662614,0.00024306642,0.000047233494,0.000281533,0.000035407138,0.000622749,0.000082890234,0.0021864169],"category_scores_gemma":[0.00010565608,0.00007741506,0.000038124806,0.00003980415,0.0004922799,0.00028203175,0.0003657788,0.0006271388,0.00002100353],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008057259,0.00014204302,0.97919095,0.000008187652,0.000015301774,0.000015717553,0.0013324774,0.00019325719,0.018490016,0.000019994537,0.000035213965,0.00047627502],"study_design_scores_gemma":[0.0006396248,0.00023412622,0.99293673,0.00002154563,0.000013772572,0.00010613943,0.00012320072,0.00013685932,0.00019021564,0.005420631,0.00009670313,0.00008044223],"about_ca_topic_score_codex":0.0005595848,"about_ca_topic_score_gemma":0.017662372,"teacher_disagreement_score":0.018299801,"about_ca_system_score_codex":0.00007891512,"about_ca_system_score_gemma":0.000021601172,"threshold_uncertainty_score":0.9987257},"labels":[],"label_agreement":null},{"id":"W2605723514","doi":"10.1038/ismej.2017.45","title":"Allelopathic interactions of linoleic acid and nitric oxide increase the competitive ability of <i>Microcystis aeruginosa</i>","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Program for Changjiang Scholars and Innovative Research Team in University; Natural Science Foundation of Zhejiang Province; National Natural Science Foundation of China; National Science Foundation","keywords":"Biology; Allelopathy; Microcystis aeruginosa; Chlorella vulgaris; Cyanobacteria; Algal bloom; Dinoflagellate; Linoleic acid; Botany; Microcystis; Algae; Microbiology; Biochemistry; Bacteria; Fatty acid; Phytoplankton; Ecology; Nutrient; Germination","score_opus":0.009718683257690944,"score_gpt":0.2346571036865084,"score_spread":0.22493842042881745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605723514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99431735,0.00010799529,0.00055175566,0.0006217687,0.000085256375,0.000118413314,0.00002371071,0.0000027230647,0.0041710436],"genre_scores_gemma":[0.9994252,0.000106114356,0.00027144793,0.000057245077,0.000044333065,0.0000021483731,5.385773e-7,0.000004935582,0.00008805732],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999098,0.00017299956,0.00031791092,0.00009173785,0.00019787023,0.000121492485],"domain_scores_gemma":[0.9986746,0.00023049438,0.0006151711,0.0003937817,0.0000257711,0.000060181308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009934709,0.00008806551,0.00017523846,0.000015563297,0.00056962454,0.00004805678,0.00047448633,0.000029009274,0.00020544474],"category_scores_gemma":[0.00015226513,0.00004769289,0.000065544446,0.000042731754,0.00049064204,0.00015416628,0.00023051476,0.0003260865,0.00001698985],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018790243,0.00028781226,0.7796338,0.00008924586,0.00017860172,0.000018856541,0.004329459,0.00077127863,0.19658868,0.0023115773,0.0012777089,0.014325033],"study_design_scores_gemma":[0.0003468589,0.000043528144,0.98903316,0.00010390322,0.000060582806,0.00048290452,0.00069898483,0.0023355854,0.0027706744,0.0023912005,0.0016368999,0.00009569904],"about_ca_topic_score_codex":0.0011278854,"about_ca_topic_score_gemma":0.00073249696,"teacher_disagreement_score":0.20939933,"about_ca_system_score_codex":0.00004734748,"about_ca_system_score_gemma":0.000024494122,"threshold_uncertainty_score":0.43811488},"labels":[],"label_agreement":null},{"id":"W2606492639","doi":"10.1038/ismej.2017.54","title":"Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Chicoutimi","funders":"Natural Sciences and Engineering Research Council of Canada; H2020 Marie Skłodowska-Curie Actions; Academy of Finland","keywords":"Permafrost; Biology; Ecological succession; Ecology; Microbial population biology; Ecosystem; Taxon; Microbial ecology; Phylum; Biodiversity; Nutrient cycle; Bacteria; Paleontology","score_opus":0.011640090042649433,"score_gpt":0.24339721207399714,"score_spread":0.2317571220313477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606492639","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.982111,0.00005450914,0.000018054012,0.0077105733,0.0005902632,0.000114069015,0.00007272768,0.000005234372,0.009323576],"genre_scores_gemma":[0.99646276,0.00006321838,0.00006838316,0.000799958,0.00017692806,0.0000013447301,0.0000056770655,0.000010716837,0.002411033],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987827,0.0004195614,0.000264999,0.00011286865,0.00009417437,0.0003257275],"domain_scores_gemma":[0.9985106,0.00014130004,0.00048233004,0.0007901646,0.00001920002,0.000056429475],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001136479,0.00014195916,0.0002031964,0.000022475126,0.0026034056,0.000093294286,0.002262839,0.00010122935,0.009273401],"category_scores_gemma":[0.000057752764,0.00007599595,0.00014913327,0.000052177948,0.0017427021,0.00019164568,0.00084038323,0.00077509426,0.00046989726],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088572764,0.00006671228,0.003376596,0.0000025007055,0.0000385204,0.000005273727,0.0015455743,0.000038954175,0.9383068,0.00013201995,0.055501353,0.00089712534],"study_design_scores_gemma":[0.0019419602,0.0004442753,0.77629,0.000054265154,0.00015894925,0.0021505828,0.000662202,0.000060484566,0.06281872,0.008669776,0.14628148,0.00046728898],"about_ca_topic_score_codex":0.00036140328,"about_ca_topic_score_gemma":0.00090734253,"teacher_disagreement_score":0.8754881,"about_ca_system_score_codex":0.000042329342,"about_ca_system_score_gemma":0.000028440976,"threshold_uncertainty_score":0.9986951},"labels":[],"label_agreement":null},{"id":"W2619938970","doi":"10.1038/ismej.2017.83","title":"Co-evolution with <i>Staphylococcus aureus</i> leads to lipopolysaccharide alterations in <i>Pseudomonas aeruginosa</i>","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Royal Society; Cystic Fibrosis Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Pseudomonas aeruginosa; Staphylococcus aureus; Biology; Microbiology; Lipopolysaccharide; Staphylococcal infections; Bacteria; Immunology; Genetics","score_opus":0.009393115000083295,"score_gpt":0.2540178194872493,"score_spread":0.24462470448716597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619938970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989031,0.00015454022,0.0020604718,0.0076383664,0.00028688027,0.0001837999,0.000016504864,0.0000075369207,0.0006208928],"genre_scores_gemma":[0.99747455,0.00012829166,0.0006128906,0.00065614074,0.0007498233,0.000013484599,0.000007852976,0.000017774917,0.00033920966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990518,0.000054183092,0.00022013234,0.00021806425,0.00013870923,0.00031712165],"domain_scores_gemma":[0.99900067,0.000006050182,0.00018182493,0.0006311067,0.000081249884,0.00009910413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003126717,0.00015489638,0.00014303402,0.000065793734,0.00058923877,0.00021029156,0.0006618551,0.00016270606,0.000014181934],"category_scores_gemma":[0.000051310628,0.00010231802,0.000058850652,0.000044642922,0.00016776945,0.00000927472,0.00011063751,0.00030222043,0.000018186425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012705584,0.000036004476,0.00398094,0.000001668328,0.00002122429,0.000007994434,0.000041158113,0.00014252689,0.9920515,0.00025792792,0.0024473579,0.0008846825],"study_design_scores_gemma":[0.0008148243,0.00059650594,0.014585412,0.00002971497,0.000022214575,0.00017471827,0.000065911605,0.000018550927,0.95858186,0.00035004204,0.02452312,0.00023713284],"about_ca_topic_score_codex":0.00007461929,"about_ca_topic_score_gemma":0.00069218734,"teacher_disagreement_score":0.033469606,"about_ca_system_score_codex":0.000029143606,"about_ca_system_score_gemma":0.0001270086,"threshold_uncertainty_score":0.4532008},"labels":[],"label_agreement":null},{"id":"W2622992011","doi":"10.1038/ismej.2017.67","title":"Identifying the core seed bank of a complex boreal bacterial metacommunity","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Metacommunity; Biology; Phyllosphere; Ecology; Taxon; Aquatic ecosystem; Boreal; Biological dispersal","score_opus":0.10108418255544828,"score_gpt":0.3185055771485044,"score_spread":0.21742139459305615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2622992011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98997456,0.000012356854,0.000042690684,0.001694353,0.00036338173,0.000082555096,0.000008676421,0.000004608351,0.0078168195],"genre_scores_gemma":[0.99917847,0.000037044323,0.00015395934,0.000294083,0.00013078187,0.0000011249066,0.0000058380215,0.0000055698492,0.00019315771],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987651,0.00065683527,0.00021532185,0.000056894627,0.00011127298,0.00019458526],"domain_scores_gemma":[0.998501,0.00021753929,0.00041846838,0.00080836914,0.000013666855,0.000040966508],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014185864,0.00008979243,0.00017546571,0.000010879255,0.003279651,0.00008346511,0.0021337646,0.00005579325,0.006830364],"category_scores_gemma":[0.00009152056,0.00004787831,0.000100923615,0.00003150331,0.001085574,0.00016332924,0.001009998,0.00074831187,0.00008351073],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038391177,0.00022757771,0.048599415,0.000009541774,0.00024467515,0.000008441152,0.008264203,0.00016806547,0.89835733,0.00079194,0.038941205,0.0040036775],"study_design_scores_gemma":[0.0003322841,0.000058830836,0.98185945,0.0000070790784,0.000044006458,0.0001233916,0.00025603088,0.000092560804,0.00089004793,0.009809037,0.006462231,0.00006507788],"about_ca_topic_score_codex":0.0014241079,"about_ca_topic_score_gemma":0.0020511313,"teacher_disagreement_score":0.93326,"about_ca_system_score_codex":0.000031650143,"about_ca_system_score_gemma":0.000015611302,"threshold_uncertainty_score":0.99801797},"labels":[],"label_agreement":null},{"id":"W2636085960","doi":"10.1038/ismej.2017.95","title":"Unexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Universität Wien; Austrian Science Fund; Tula Foundation; Compute Canada; Canadian Institute for Advanced Research; National Science Foundation","keywords":"Chlamydiae; Biology; Flagellum; Intracellular parasite; Genome; Obligate; Chlamydiales; Chlamydiaceae; Microbiology; Evolutionary biology; Gene; Bacteria; Genetics; Ecology","score_opus":0.058403132394617106,"score_gpt":0.34972365478351264,"score_spread":0.29132052238889555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2636085960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946719,0.0014180753,0.0001704503,0.0022977884,0.0008088297,0.0003882201,0.0000089997575,0.000009005801,0.000226771],"genre_scores_gemma":[0.9976874,0.00035404155,0.00017250142,0.00000901625,0.00014071733,0.000018310635,0.000004342938,0.000011610815,0.0016020699],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987491,0.00035762135,0.00033987113,0.00020060806,0.00004899046,0.0003038477],"domain_scores_gemma":[0.99805325,0.0005747021,0.00034927527,0.0007731074,0.00022996987,0.000019705818],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019219776,0.000117815405,0.00026112888,0.00012150968,0.00055857346,0.00007038498,0.00072376215,0.00012982525,0.0004941232],"category_scores_gemma":[0.0029659627,0.000079008416,0.00011277155,0.00005969515,0.0004778842,0.00025732187,0.00021072086,0.00085657474,0.0000336032],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005228914,0.0001154246,0.037668504,0.000016934484,0.00012690992,0.0000033193205,0.0002807983,0.000023601067,0.9526027,0.000117083735,0.0004836027,0.008038266],"study_design_scores_gemma":[0.0005957407,0.00012671352,0.7354285,0.000047671376,0.000021618604,0.0002632474,0.000051348412,0.0000040210784,0.26126027,0.0014311785,0.00071680156,0.000052880474],"about_ca_topic_score_codex":0.00051861524,"about_ca_topic_score_gemma":0.0001670638,"teacher_disagreement_score":0.69776,"about_ca_system_score_codex":0.00010370369,"about_ca_system_score_gemma":0.00015592079,"threshold_uncertainty_score":0.5410302},"labels":[],"label_agreement":null},{"id":"W2736769361","doi":"10.1038/ismej.2017.111","title":"Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Japan Society for the Promotion of Science; National Science Foundation","keywords":"Biology; Metagenomics; Chloroflexi (class); Proteobacteria; Phylum; Ecology; Microbial ecology; Biodiversity; Genome; Microbial population biology; Gene; Genetics; Bacteria; 16S ribosomal RNA","score_opus":0.030121220203166384,"score_gpt":0.22810373600131675,"score_spread":0.19798251579815038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2736769361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966924,0.00002121664,0.000009217646,0.0015213904,0.00014610092,0.0000876852,0.000016496344,0.0000058176734,0.001499663],"genre_scores_gemma":[0.9988576,0.00004835838,0.00001122014,0.00040143036,0.000034416793,5.2192013e-7,0.000014888978,0.0000062897843,0.0006252266],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987264,0.00075702707,0.00014640324,0.000054940254,0.00012765641,0.00018756675],"domain_scores_gemma":[0.99889356,0.00015526765,0.000407315,0.00048721893,0.00002518778,0.000031430704],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00085997104,0.00009660299,0.0001667536,0.000015107267,0.006134157,0.000044119526,0.0013083994,0.000059769976,0.003049504],"category_scores_gemma":[0.000042969146,0.00005289806,0.000063258805,0.0000513875,0.0013828622,0.00017984406,0.0015888471,0.00045738308,0.000039381033],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053083786,0.000353539,0.85023075,0.0000058635,0.0005056615,0.0000071601808,0.032192696,0.002775325,0.09528795,0.00016608316,0.01654475,0.0013993682],"study_design_scores_gemma":[0.00063475635,0.00010618029,0.9926565,0.000013205291,0.00010583484,0.00009595306,0.00065060693,0.000040073824,0.0032077474,0.00055162015,0.0018368986,0.00010061269],"about_ca_topic_score_codex":0.0019303691,"about_ca_topic_score_gemma":0.022694515,"teacher_disagreement_score":0.14242575,"about_ca_system_score_codex":0.00005231017,"about_ca_system_score_gemma":0.000014062076,"threshold_uncertainty_score":0.99786186},"labels":[],"label_agreement":null},{"id":"W2740985030","doi":"10.1038/ismej.2017.109","title":"Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Forest Ecology and Biodiversity Studies","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Natural Resources and Forestry; Natural Resources Canada; Ministry of Forests; Canadian Forest Service; College of New Caledonia; University of British Columbia","funders":"Canadian Forest Service; Natural Sciences and Engineering Research Council of Canada; U.S. Forest Service; Office of Science; Genome Canada; Tula Foundation; Joint Genome Institute; Natural Resources Canada; Genome British Columbia; Ministry of Natural Resources; U.S. Department of Energy","keywords":"Biology; Edaphic; Decomposer; Ecology; Soil organic matter; Biodiversity; Soil fertility; Humus; Ecosystem; Soil water; Agroforestry","score_opus":0.018191637061383603,"score_gpt":0.2060290895392439,"score_spread":0.1878374524778603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2740985030","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99620056,0.00011521628,2.0088959e-7,0.0030995714,0.00019391176,0.000064184984,0.00000868374,0.0000065471086,0.0003110971],"genre_scores_gemma":[0.9990625,0.00013285542,0.000014005232,0.00039561873,0.00016854786,4.4029483e-7,0.0000027622561,5.7381544e-7,0.00022273567],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999492,0.00008302287,0.00010805166,0.00006570472,0.00008219555,0.00016902709],"domain_scores_gemma":[0.99941885,0.00024112528,0.00019502608,0.00006703661,0.000042312666,0.00003562274],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00021646464,0.0000954657,0.00014020721,0.000012745464,0.0021122587,0.00013489001,0.00039303215,0.00005901268,0.00021438269],"category_scores_gemma":[0.000031996624,0.000030616102,0.00007564919,0.000031751162,0.0005339362,0.00010658069,0.00024339896,0.00022346723,0.00002939181],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039167197,0.00003859118,0.9881328,0.000012549462,0.000058679332,0.000020395053,0.00021469766,4.7186597e-7,0.008273422,0.000013517022,0.001155763,0.0020399734],"study_design_scores_gemma":[0.00020020884,0.0002594904,0.9978623,0.00007973159,0.000038872553,0.00018941304,0.00014282305,0.0000034740897,0.0008090145,0.00020498934,0.00013602465,0.000073660725],"about_ca_topic_score_codex":0.00017391614,"about_ca_topic_score_gemma":0.0021008241,"teacher_disagreement_score":0.009729524,"about_ca_system_score_codex":0.000005491854,"about_ca_system_score_gemma":0.000002854751,"threshold_uncertainty_score":0.9991869},"labels":[],"label_agreement":null},{"id":"W2742801096","doi":"10.1038/ismej.2017.112","title":"Mixotrophy drives niche expansion of verrucomicrobial methanotrophs","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":135,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Royal Society Te Apārangi; Commonwealth Scientific and Industrial Research Organisation; Royal Society; University of Otago; National Aeronautics and Space Administration","keywords":"Methanotroph; Biology; Carbon fixation; Methane; Autotroph; Mixotroph; Hydrogenase; Anaerobic oxidation of methane; Heterotroph; Environmental chemistry; Bacteria; Ecology; Carbon dioxide; Chemistry; Genetics","score_opus":0.01285108781173137,"score_gpt":0.25323246493246465,"score_spread":0.2403813771207333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2742801096","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954037,0.0005979012,0.0017801332,0.0005353558,0.0012955607,0.000058114398,0.000013041562,0.0000027982885,0.0003133887],"genre_scores_gemma":[0.99611515,0.0007067159,0.00083124446,0.00015284223,0.0014086913,0.0000010784362,0.0000051932802,0.000014616413,0.00076449907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993073,0.000095839845,0.00020596715,0.00012345379,0.00010454009,0.00016294171],"domain_scores_gemma":[0.9990204,0.0000069748785,0.0003193088,0.0005161837,0.00008630542,0.00005081991],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031262398,0.00010600651,0.00014482817,0.000025879215,0.00044717957,0.000052466417,0.0004883463,0.00008905563,0.00005759517],"category_scores_gemma":[0.00012477399,0.000069227455,0.00015107442,0.000017906577,0.00014937796,0.000009440419,0.00015587018,0.00017161074,0.00001166453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013814443,0.00001687168,0.00016674874,0.000004218205,0.0000434339,0.0000013002243,0.00006449245,0.00003454863,0.9836079,0.000036615344,0.013436868,0.0024488731],"study_design_scores_gemma":[0.0007237487,0.00015570008,0.008827716,0.000018379063,0.00005618049,0.00013785512,0.000035335022,0.000008632559,0.9444736,0.00023613204,0.045221068,0.00010564286],"about_ca_topic_score_codex":0.0000239042,"about_ca_topic_score_gemma":0.0000059817644,"teacher_disagreement_score":0.039134275,"about_ca_system_score_codex":0.000005764687,"about_ca_system_score_gemma":0.000062062965,"threshold_uncertainty_score":0.3439389},"labels":[],"label_agreement":null},{"id":"W2744725584","doi":"10.1038/ismej.2017.129","title":"Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Armand Frappier Museum; Fisheries and Oceans Canada; Institut National de la Recherche Scientifique; National Research Council Canada","funders":"Natural Resources Canada; Environmental Studies Research Funds; Dalhousie University; Compute Canada; Suncor Energy Incorporated; McGill University","keywords":"Dispersant; Biodegradation; Context (archaeology); AlkB; Environmental chemistry; Hopanoids; Metagenomics; Hydrocarbon; Residual oil; Petroleum; Environmental science; Microorganism; Biology; Bacteria; Chemistry; Ecology; Dispersion (optics); Organic chemistry; Source rock","score_opus":0.012555341922173694,"score_gpt":0.24401456462429133,"score_spread":0.23145922270211763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2744725584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930266,0.000006347412,0.0000048286297,0.0042290734,0.00014491242,0.000022040454,0.000003830677,0.0000028646314,0.0025594712],"genre_scores_gemma":[0.9989441,0.00022146452,0.000081164464,0.00008783423,0.00007345881,2.3127613e-7,2.169812e-7,0.0000039446545,0.00058756565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999446,0.000047824262,0.00011710997,0.00008643814,0.00016381517,0.00013882027],"domain_scores_gemma":[0.9994403,0.00003862598,0.00024509945,0.00021121558,0.0000063297357,0.000058413443],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043133608,0.000072878094,0.00009485606,0.0000050876183,0.0003794011,0.000099874196,0.0003728737,0.000031759053,0.0016862033],"category_scores_gemma":[0.00007330378,0.000035304238,0.000034508168,0.000019776986,0.0004202566,0.00014985554,0.000263039,0.00018568759,0.00003987246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026733416,0.00001359912,0.010830387,0.0000014942357,0.000007449038,0.0000011710738,0.00018503644,3.0954678e-7,0.95000976,0.0000035761668,0.000372591,0.038547877],"study_design_scores_gemma":[0.00025962424,0.000016170787,0.3483283,0.000015458776,0.000016057074,0.00008045569,0.000036934605,0.00013951483,0.64965427,0.0001610848,0.0012093569,0.000082795515],"about_ca_topic_score_codex":0.000091837974,"about_ca_topic_score_gemma":0.000053634223,"teacher_disagreement_score":0.3374979,"about_ca_system_score_codex":0.000031814467,"about_ca_system_score_gemma":0.0000068858276,"threshold_uncertainty_score":0.9992264},"labels":[],"label_agreement":null},{"id":"W2753973347","doi":"10.1038/ismej.2017.143","title":"DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Joint Genome Institute; U.S. Environmental Protection Agency; U.S. Department of Energy","keywords":"Metagenomics; Biology; Anaerobic digestion; Anaerobic exercise; Biogas; Population; Stable-isotope probing; Microcosm; Microbiology; Bacteria; Methane; Gene; Microorganism; Biochemistry; Genetics; Ecology; Physiology","score_opus":0.037435833919087454,"score_gpt":0.23917307750496125,"score_spread":0.2017372435858738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2753973347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97762,0.00034666713,0.019346936,0.0013589938,0.0008783799,0.00019114387,0.000004588557,0.000079955586,0.00017333814],"genre_scores_gemma":[0.99856716,0.00018218179,0.0007444664,0.000038920432,0.00027756087,0.0000077469585,0.000008455659,0.000033626082,0.00013989856],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.9987934,0.00007096788,0.00034832928,0.00017115504,0.00025616182,0.00035996686],"domain_scores_gemma":[0.9992304,0.000026616912,0.00022002422,0.0003598798,0.00005443274,0.00010865363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005646218,0.00022765923,0.00023738948,0.00027806536,0.0010111668,0.0006642903,0.00043216016,0.00006497285,0.000042817526],"category_scores_gemma":[0.00006383603,0.00015218288,0.00009514038,0.00014638118,0.00011049673,0.0005196254,0.000039829494,0.0005045715,0.000007710606],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015501243,0.00026213573,0.2752991,0.00011463984,0.00063535554,0.00019523181,0.006884796,0.4953138,0.2078094,0.007414485,0.00059568975,0.0053203544],"study_design_scores_gemma":[0.00093547284,0.000059158134,0.9820374,0.00015003094,0.00012977702,0.00014448802,0.00085154606,0.005061372,0.009556495,0.00044530083,0.0002310251,0.0003979034],"about_ca_topic_score_codex":0.0000477452,"about_ca_topic_score_gemma":0.00047615112,"teacher_disagreement_score":0.70673835,"about_ca_system_score_codex":0.000361313,"about_ca_system_score_gemma":0.00003136365,"threshold_uncertainty_score":0.777718},"labels":[],"label_agreement":null},{"id":"W2761527878","doi":"10.1038/ismej.2017.169","title":"Mycorrhizal fungi show regular community compositions in natural ecosystems","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Key Research and Development Program of China; KU Leuven","keywords":"Biology; Ecosystem; Ecology; Taxon; Community structure; Universality (dynamical systems); Arbuscular mycorrhizal; Biodiversity; Symbiosis; Microbial population biology; Arbuscular mycorrhizal fungi; Mycorrhizal fungi; Botany; Bacteria; Paleontology","score_opus":0.02191739481541924,"score_gpt":0.23847445127631509,"score_spread":0.21655705646089585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2761527878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.988085,0.0004745042,0.000005952647,0.0049589267,0.0011669908,0.00010982153,0.00027629748,0.000019224903,0.004903299],"genre_scores_gemma":[0.99801743,0.0003303456,0.000023776454,0.00020469964,0.0006834298,0.0000036317642,0.00013220236,9.020393e-7,0.00060360617],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886453,0.00040684143,0.0002319736,0.000078772806,0.00017416797,0.00024373573],"domain_scores_gemma":[0.9983587,0.0011242538,0.0002061709,0.00016361763,0.000061693136,0.0000855469],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00076260587,0.00011115204,0.00015281924,0.000015967045,0.0032014032,0.00050173874,0.0009028506,0.000059551112,0.00177186],"category_scores_gemma":[0.000142947,0.000035615623,0.00012131952,0.00006632205,0.000017418899,0.00030844443,0.00011340587,0.0011205063,0.0002549052],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003575395,0.00063989114,0.3271369,0.000019900255,0.0001520769,0.00016303269,0.0019774863,0.00016154819,0.49253508,0.005706905,0.13882983,0.0323198],"study_design_scores_gemma":[0.00040074962,0.0004947158,0.7918851,0.0007240492,0.000083769904,0.007259526,0.004499783,0.006093171,0.0023262606,0.016170993,0.1693279,0.000734038],"about_ca_topic_score_codex":0.002870923,"about_ca_topic_score_gemma":0.005034696,"teacher_disagreement_score":0.4902088,"about_ca_system_score_codex":0.000040367548,"about_ca_system_score_gemma":0.000009261637,"threshold_uncertainty_score":0.9991407},"labels":[],"label_agreement":null},{"id":"W2761759859","doi":"10.1038/ismej.2017.167","title":"Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"FP7 People: Marie-Curie Actions; Tula Foundation; Gordon and Betty Moore Foundation; David and Lucile Packard Foundation","keywords":"Biology; Paraphyly; Dinoflagellate; Haptophyte; Sister group; Eukaryote; Phylogenetic tree; Gene; Phylogenetics; Genetics; Gymnodinium; Evolutionary biology; Ribosomal RNA; Genome; Botany; Clade; Ecology","score_opus":0.013670868093822725,"score_gpt":0.21684083056754258,"score_spread":0.20316996247371985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2761759859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99608094,0.00043405418,0.00011194115,0.00017094935,0.00013671971,0.000064195534,0.000029053961,0.000001216419,0.0029709132],"genre_scores_gemma":[0.99837923,0.00027988493,0.0005339232,0.000049611423,0.00018287002,3.3080207e-7,0.000007956089,0.000006956331,0.0005592264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994708,0.000041295894,0.00016993089,0.00008996019,0.00009488207,0.00013318472],"domain_scores_gemma":[0.999152,0.000010291008,0.0003655954,0.00033018738,0.00009485771,0.000047081783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022289318,0.00009018815,0.00013403445,0.000016536647,0.0002553604,0.000036614958,0.0005634301,0.00008294996,0.000059134436],"category_scores_gemma":[0.0000319497,0.00006320461,0.00014219899,0.000014592576,0.00017816183,0.0000054837215,0.0002646859,0.000116695286,0.0000022052925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011034579,0.00006376905,0.035846327,0.00001336583,0.000080671634,0.0000023370826,0.0001214904,0.00006265039,0.96190095,0.000018257253,0.0011073571,0.0006724716],"study_design_scores_gemma":[0.00044324354,0.00021897281,0.041683126,0.000008070285,0.00004240902,0.000021075115,0.000067976136,0.000017756882,0.9538769,0.0011124182,0.002423683,0.0000843533],"about_ca_topic_score_codex":0.000026992386,"about_ca_topic_score_gemma":0.000016872447,"teacher_disagreement_score":0.008024041,"about_ca_system_score_codex":0.000005871129,"about_ca_system_score_gemma":0.000038654838,"threshold_uncertainty_score":0.2577409},"labels":[],"label_agreement":null},{"id":"W2768021120","doi":"10.1038/ismej.2017.183","title":"Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":571,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ocean Networks Canada Society; University of Victoria","funders":"National Yang-Ming University; Ministry of Science and Technology, Taiwan; National Center for Theoretical Sciences","keywords":"Biology; Biological dispersal; Protist; Metacommunity; Ecology; Habitat; Microbial ecology; Microbial population biology; Bacteria; Population","score_opus":0.06671977067357635,"score_gpt":0.2764190227338847,"score_spread":0.20969925206030834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2768021120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937412,0.000011617023,0.000022489714,0.0012810117,0.00012381267,0.000095966905,0.000001437776,0.000001883857,0.00472055],"genre_scores_gemma":[0.9996857,0.00003864455,0.000116353935,0.000040481827,0.00006303575,0.0000017296376,0.000002293495,0.0000031689187,0.000048581645],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992999,0.0003017319,0.00019022066,0.00003758774,0.0000517231,0.00011883382],"domain_scores_gemma":[0.99888176,0.0005414221,0.0003845434,0.0001704659,0.000008117553,0.000013708239],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084175967,0.000057195844,0.000105161474,0.000009251756,0.001296965,0.00005144968,0.00035793878,0.000029651574,0.00056719454],"category_scores_gemma":[0.00027483838,0.00003479931,0.000021301872,0.000018216613,0.0008076288,0.00023707488,0.00039141695,0.0004523553,0.0000026710882],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047164096,0.00003897273,0.9343155,0.000007305733,0.000047034173,0.000003417002,0.024397528,0.00019627393,0.03538887,0.002919132,0.00015553235,0.0020588145],"study_design_scores_gemma":[0.0005678158,0.00008097105,0.9904438,0.00002620986,0.000011668335,0.000020721302,0.003160817,0.00065909425,0.00014172739,0.0047519733,0.00008670352,0.000048465135],"about_ca_topic_score_codex":0.00065037434,"about_ca_topic_score_gemma":0.018847616,"teacher_disagreement_score":0.056128353,"about_ca_system_score_codex":0.00003565548,"about_ca_system_score_gemma":0.0000084179665,"threshold_uncertainty_score":0.99905586},"labels":[],"label_agreement":null},{"id":"W2774820118","doi":"10.1038/s41396-017-0017-5","title":"The complex resistomes of Paenibacillaceae reflect diverse antibiotic chemical ecologies","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; University of California, San Francisco; University of Toronto; McMaster University","keywords":"Resistome; Biology; Antibiotic resistance; Antibiotics; Microbial ecology; Bacteria; Genetics; Computational biology; Evolutionary biology","score_opus":0.07008434724679069,"score_gpt":0.3374254401864955,"score_spread":0.2673410929397048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2774820118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9765068,0.00007249836,0.000010978547,0.0074701807,0.00018251991,0.00008433051,0.0000044429,0.000008941022,0.01565929],"genre_scores_gemma":[0.99809134,0.00048255204,0.00022506842,0.00024619227,0.00007453016,1.5699523e-7,3.00943e-7,0.0000070411193,0.00087280176],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988998,0.00009502678,0.00021916172,0.00011821657,0.0003343448,0.0003334243],"domain_scores_gemma":[0.99901134,0.00017176056,0.00027889936,0.0004094323,0.000004517231,0.00012403041],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00064220035,0.00011788033,0.00014768283,0.000007837579,0.0015361786,0.00014258815,0.0010590467,0.00004125026,0.0007141627],"category_scores_gemma":[0.00022424353,0.00005496608,0.00010877641,0.000033555774,0.0018988835,0.00017607067,0.0006465528,0.00029381484,0.00023484946],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000162307,0.00018998494,0.07917592,0.000010180728,0.000099345765,0.000041491676,0.00035839,0.00015631353,0.85356134,0.00018524949,0.02756441,0.03849508],"study_design_scores_gemma":[0.00058976904,0.000109769186,0.87462175,0.000026911192,0.00006460808,0.00017040984,0.0003514573,0.0002703124,0.10641188,0.002393228,0.014817194,0.00017273735],"about_ca_topic_score_codex":0.00003205623,"about_ca_topic_score_gemma":0.000017803814,"teacher_disagreement_score":0.7954458,"about_ca_system_score_codex":0.000100849065,"about_ca_system_score_gemma":0.000008404584,"threshold_uncertainty_score":0.99976367},"labels":[],"label_agreement":null},{"id":"W2776948390","doi":"10.1038/ismej.2014.2","title":"Erratum: Mesoscale distribution and functional diversity of picoeukaryotes in the first-year sea ice of the Canadian Arctic","year":2014,"lang":"en","type":"erratum","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Arctic; Mesoscale meteorology; The arctic; Diversity (politics); Oceanography; Physical geography; Ecology; Anthropology; Geography; Sociology","score_opus":0.011527991543128047,"score_gpt":0.19183738775799875,"score_spread":0.1803093962148707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2776948390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9469614,0.0003197228,0.00004036889,0.02385852,0.0076824287,0.00048749143,0.000339235,0.0000048949996,0.020305954],"genre_scores_gemma":[0.9975042,0.00007973447,0.000003296922,0.00053399673,0.00015097312,8.8005896e-7,0.000045603923,0.0000038363246,0.0016775177],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9987114,0.0006395207,0.00018298007,0.000087810105,0.00019096266,0.0001873086],"domain_scores_gemma":[0.9991937,0.00020707698,0.00025115086,0.00028099061,0.0000231074,0.000043938646],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010260303,0.00010797857,0.00018020779,0.000023647464,0.001297791,0.0000146391985,0.0007390828,0.0002129022,0.0009479028],"category_scores_gemma":[0.00009172243,0.000056966437,0.000082092265,0.00013531624,0.00077736436,0.000052737218,0.0004863998,0.0015959425,0.000010416316],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027587448,0.00003463327,0.10148829,0.00001810681,0.000027753875,8.6738885e-7,0.0009683666,0.00018484636,0.000032286112,0.00016901734,0.89701027,0.000037973517],"study_design_scores_gemma":[0.00014355357,0.00006015048,0.9490892,0.000038820093,0.000051772655,0.000057275396,0.00013558303,0.00003954765,0.0000058092123,0.0073003634,0.043013524,0.00006436201],"about_ca_topic_score_codex":0.07645589,"about_ca_topic_score_gemma":0.68780607,"teacher_disagreement_score":0.85399675,"about_ca_system_score_codex":0.00020998655,"about_ca_system_score_gemma":0.00010870282,"threshold_uncertainty_score":0.99996537},"labels":[],"label_agreement":null},{"id":"W2783521342","doi":"10.1038/s41396-017-0018-4","title":"Soil contamination alters the willow root and rhizosphere metatranscriptome and the root–rhizosphere interactome","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; National Research Council Canada; Institut National de la Recherche Scientifique","funders":"Compute Canada; Genome Canada","keywords":"Rhizosphere; Willow; Phytoremediation; Biology; Bulk soil; Soil contamination; Botany; Environmental remediation; Soil water; Contamination; Agronomy; Ecology; Bacteria","score_opus":0.00907478319540986,"score_gpt":0.20534560447104352,"score_spread":0.19627082127563367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2783521342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9080394,0.0012993772,0.00005991071,0.08857947,0.0005970293,0.00015845372,0.0000018336668,0.000019141367,0.0012454155],"genre_scores_gemma":[0.9943384,0.00042864573,0.000015838868,0.0015869312,0.00088849565,0.000006844,0.000001314182,0.0000014483243,0.0027320937],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99898225,0.0002520341,0.00019835323,0.00015789861,0.00021383804,0.00019560875],"domain_scores_gemma":[0.9995105,0.00012225068,0.00014191678,0.00007733698,0.00008756532,0.000060388058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010312189,0.00012688657,0.00013042567,0.0000048454735,0.0010145968,0.00035597253,0.0003009959,0.00003687897,0.0004748715],"category_scores_gemma":[0.00003251368,0.00002769354,0.00007310039,0.00014301616,0.000549399,0.00020068945,0.00008199911,0.00025992887,0.000013172496],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009237715,0.00013313434,0.0028469798,0.000018715766,0.00063689006,0.000010895202,0.00784305,0.000033277036,0.041921627,0.018831225,0.048255473,0.878545],"study_design_scores_gemma":[0.0019703563,0.0006947665,0.27409792,0.000067073546,0.0002871805,0.00069444784,0.010620845,0.00070673734,0.002781207,0.009664973,0.6980302,0.0003843339],"about_ca_topic_score_codex":0.0001910252,"about_ca_topic_score_gemma":0.0025347658,"teacher_disagreement_score":0.87816066,"about_ca_system_score_codex":0.000015796182,"about_ca_system_score_gemma":0.000004869044,"threshold_uncertainty_score":0.78035605},"labels":[],"label_agreement":null},{"id":"W2784099543","doi":"10.1038/s41396-017-0031-7","title":"Phosphate insensitive aminophosphonate mineralisation within oceanic nutrient cycles","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queen's University; Universität Wien; University of Cambridge; Queen's University Belfast; Department for Employment and Learning, Northern Ireland","keywords":"Biology; Regulon; Phosphorus; Nutrient; Phosphate; Catabolism; Marine bacteriophage; Bacteria; Enzyme; Gene; Biochemistry; Botany; Ecology; Genetics; Regulation of gene expression; Chemistry","score_opus":0.011004495748108545,"score_gpt":0.2625993426131603,"score_spread":0.2515948468650518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2784099543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99549526,0.0002870053,0.0025638368,0.00095163594,0.00027344076,0.000076157696,0.000006455217,0.000022299753,0.00032388838],"genre_scores_gemma":[0.994578,0.00034565225,0.0022148879,0.001117775,0.00095862744,0.0000010943721,0.00001589083,0.00001622128,0.0007518696],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907124,0.00010159104,0.00025326118,0.00018830471,0.00018132778,0.00020430161],"domain_scores_gemma":[0.999175,0.000010792575,0.00024391778,0.00024040503,0.00026278806,0.00006706883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045345546,0.00014551051,0.0001225839,0.000038726368,0.00031905854,0.00005704964,0.00017030751,0.000088258195,0.000005015412],"category_scores_gemma":[0.000069725356,0.00009002376,0.00010811311,0.00012219575,0.00025448456,0.0000068357785,0.00006805739,0.00016858858,0.000009459067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001661998,0.000041035266,0.00026380125,0.0000017355288,0.000104921135,0.000008283787,0.0002774001,0.000014647275,0.99140304,0.00019844488,0.00505981,0.0024606865],"study_design_scores_gemma":[0.00025416169,0.00031410894,0.0018115116,0.000022122838,0.000044497985,0.00025328997,0.00021162133,0.0002361844,0.9893839,0.0019462603,0.0053733755,0.00014898794],"about_ca_topic_score_codex":0.000010630077,"about_ca_topic_score_gemma":0.000014933263,"teacher_disagreement_score":0.0023116986,"about_ca_system_score_codex":0.000026901367,"about_ca_system_score_gemma":0.000045120378,"threshold_uncertainty_score":0.36710623},"labels":[],"label_agreement":null},{"id":"W2787668501","doi":"10.1038/s41396-018-0212-z","title":"Cross-feeding modulates antibiotic tolerance in bacterial communities","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":161,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Health and Human Services; National Institutes of Health; Cystic Fibrosis Foundation; National Heart, Lung, and Blood Institute; University of Minnesota","keywords":"Biology; Pseudomonas aeruginosa; Microbiology; Salmonella enterica; Antibiotics; Tetracycline; Multidrug tolerance; Obligate; Facultative; Ampicillin; Escherichia coli; Obligate anaerobe; Antibiotic resistance; Antimicrobial; Cross-resistance; Anaerobic exercise; Bacteria; Salmonella; Ecology; Physiology; Biofilm; Biochemistry; Genetics","score_opus":0.012137339811405813,"score_gpt":0.2753261218141537,"score_spread":0.2631887820027479,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2787668501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99711967,0.00019162618,0.0007011016,0.00028664552,0.00054421515,0.000038946135,0.0000039030383,0.000004006875,0.0011098853],"genre_scores_gemma":[0.9974767,0.00018536003,0.00031046063,0.00024350121,0.00107173,3.111285e-7,0.000009105347,0.000010056095,0.00069280725],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994094,0.000078377976,0.00017688789,0.00006742105,0.000082074424,0.00018584645],"domain_scores_gemma":[0.99962145,0.000008625123,0.000070481685,0.00018164457,0.00008108404,0.000036735317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029429275,0.000080922924,0.00007989735,0.00002844504,0.00021617975,0.00008999306,0.00026712322,0.00006766858,0.00011466391],"category_scores_gemma":[0.000023910889,0.00005926731,0.00004375666,0.000051075767,0.0002406232,0.000004876556,0.000087074084,0.00015780539,0.000015016306],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023865292,0.000083816805,0.045239672,0.000011215354,0.00005558328,0.0000034706338,0.0016408991,0.0051911357,0.9425592,0.00021021436,0.0023748681,0.002391283],"study_design_scores_gemma":[0.0039849738,0.00122166,0.79776865,0.00019404362,0.000035059486,0.0011236051,0.0021471048,0.04602222,0.10356041,0.0020259158,0.04113433,0.000782018],"about_ca_topic_score_codex":0.000028622217,"about_ca_topic_score_gemma":0.00022585857,"teacher_disagreement_score":0.8389988,"about_ca_system_score_codex":0.000013087253,"about_ca_system_score_gemma":0.000038643655,"threshold_uncertainty_score":0.24168508},"labels":[],"label_agreement":null},{"id":"W2789511815","doi":"10.1038/s41396-018-0078-0","title":"Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":489,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Lawrence Berkeley National Laboratory; Biological and Environmental Research; Office of Science; Austrian Science Fund; U.S. Department of Energy","keywords":"Candidatus; Phylum; Biology; Biogeochemical cycle; Sulfur cycle; Sulfur; Sulfate; Sulfite; Sulfur metabolism; Sulfite reductase; Green sulfur bacteria; Ecology; Botany; Bacteria; Genome; Phototroph; Genetics; Gene; Chemistry; Biochemistry","score_opus":0.021137781916931785,"score_gpt":0.22809908194699957,"score_spread":0.2069613000300678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789511815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99574184,0.00001686206,0.000034615998,0.0011918179,0.00033015496,0.00006599769,0.000004788137,0.000006529831,0.002607409],"genre_scores_gemma":[0.9986031,0.000026509504,0.000030271325,0.0009854258,0.0001703857,3.643786e-7,0.000001026631,0.0000044925873,0.00017841834],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909556,0.00038389207,0.00012961605,0.000078230856,0.000107970765,0.00020476058],"domain_scores_gemma":[0.99938816,0.00013121568,0.00015139474,0.00027320554,0.000010696775,0.00004531471],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000689991,0.00008376877,0.00011688078,0.000012142105,0.0016860364,0.000012977209,0.00092309143,0.00006249404,0.012430494],"category_scores_gemma":[0.000017160834,0.00004538214,0.00008355,0.00007238915,0.0011678358,0.00010704831,0.0011017043,0.00043318133,0.00019346859],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006289035,0.00038998816,0.15303989,0.0000075565767,0.00018805036,0.000010262686,0.033104666,0.00024979102,0.63395894,0.0003276548,0.17285194,0.0052423673],"study_design_scores_gemma":[0.00064098765,0.00028449547,0.95856094,0.000012714584,0.00006495655,0.00023838699,0.0011485522,0.00015610775,0.018313931,0.012558958,0.007841623,0.0001783718],"about_ca_topic_score_codex":0.00012902226,"about_ca_topic_score_gemma":0.0005804151,"teacher_disagreement_score":0.805521,"about_ca_system_score_codex":0.00004441871,"about_ca_system_score_gemma":0.000011818051,"threshold_uncertainty_score":0.99961364},"labels":[],"label_agreement":null},{"id":"W2790178828","doi":"10.1038/s41396-017-0042-4","title":"Deposition rates of viruses and bacteria above the atmospheric boundary layer","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":241,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Fisheries and Oceans Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Goddard Space Flight Center; National Oceanic and Atmospheric Administration; Banco Bilbao Vizcaya Argentaria; Junta de Andalucía; Tula Foundation; National Aeronautics and Space Administration","keywords":"Deposition (geology); Aerosolization; Aerosol; Atmosphere (unit); Bacteria; Biology; Sea spray; Environmental chemistry; Flux (metallurgy); Atmospheric sciences; Chemistry; Meteorology; Sediment","score_opus":0.015059642608766117,"score_gpt":0.2683428986833603,"score_spread":0.2532832560745942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790178828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974608,0.000068926456,0.00020370648,0.0008654758,0.0002971509,0.000048073147,0.0000031645563,0.000003885135,0.0010488527],"genre_scores_gemma":[0.9981403,0.00010903266,0.0005468847,0.00067585,0.00019169641,9.720183e-7,2.455545e-7,0.0000058336514,0.00032922818],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99958116,0.00005979337,0.00012880897,0.000057913985,0.0000704392,0.000101882884],"domain_scores_gemma":[0.9997178,0.000033385924,0.000109289496,0.00009825059,0.00001183207,0.000029468025],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016101195,0.000058125584,0.000058548652,0.000002250801,0.0004291157,0.000105065104,0.00013234644,0.00002003044,0.0030640855],"category_scores_gemma":[0.0000070240985,0.000029009114,0.000032936627,0.000058901314,0.00035453608,0.00021212833,0.00007742251,0.00012455451,0.000108482134],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002469329,0.000016667329,0.0012954767,7.2226476e-7,0.000015111907,8.245688e-7,0.0007423972,0.0000048148677,0.9904784,0.000006731285,0.002976089,0.0044380496],"study_design_scores_gemma":[0.00019822859,0.00018250689,0.7889019,0.000028226666,0.000047106278,0.00083893025,0.00036659514,0.0002129487,0.16000877,0.00041146672,0.048708346,0.00009493274],"about_ca_topic_score_codex":0.00022762165,"about_ca_topic_score_gemma":0.00014214334,"teacher_disagreement_score":0.83046967,"about_ca_system_score_codex":0.000027174345,"about_ca_system_score_gemma":0.000007208387,"threshold_uncertainty_score":0.99784726},"labels":[],"label_agreement":null},{"id":"W2790475227","doi":"10.1038/s41396-018-0073-5","title":"Iron and phosphorus deprivation induce sociality in the marine bloom-forming cyanobacterium <i>Trichodesmium</i>","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal ecosystems","field":"Earth and Planetary Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Mediterranean Sea Research Center of Israel, University of Haifa; Israel Science Foundation; Dalhousie University; Higher Council for Science and Technology; Bar-Ilan University","keywords":"Trichodesmium; Biology; Sociality; Cyanobacteria; Phosphorus; Bloom; Algal bloom; Ecology; Algae; Diazotroph; Nutrient; Phytoplankton; Bacteria; Genetics; Nitrogen fixation","score_opus":0.014436693952725012,"score_gpt":0.21539487069578026,"score_spread":0.20095817674305524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790475227","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9824415,0.00011872734,0.000051297076,0.001607605,0.00029875466,0.00010047351,0.0000041985204,0.0000071590866,0.015370287],"genre_scores_gemma":[0.9979733,0.00013726797,0.000054343713,0.00094947556,0.00071710214,5.7254823e-7,0.0000057608227,0.0000022001834,0.00015998149],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990207,0.00019525382,0.00023248229,0.00009815027,0.0002302321,0.00022317462],"domain_scores_gemma":[0.9995417,0.00011186806,0.0001359956,0.00012710775,0.00003464173,0.00004867409],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001663365,0.00009021308,0.00010464584,0.00003716843,0.00043065773,0.00019052322,0.00027111542,0.000045701145,0.00042792162],"category_scores_gemma":[0.000040585488,0.000047284077,0.000029999257,0.00020299606,0.000076422046,0.00023987838,0.000039991854,0.00031874556,0.000033225337],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005844871,0.000017374961,0.7224634,0.000008097165,0.000009811624,0.000010039635,0.0017017467,0.000013725614,0.00008798072,0.00007944777,0.0007409542,0.27480897],"study_design_scores_gemma":[0.00027639308,0.00011359008,0.97687334,0.0000108214235,0.000012419791,0.00033625434,0.0006059378,0.0010558577,0.00013006301,0.0033556519,0.017133683,0.00009598661],"about_ca_topic_score_codex":0.0046589742,"about_ca_topic_score_gemma":0.008017504,"teacher_disagreement_score":0.27471298,"about_ca_system_score_codex":0.0000063494917,"about_ca_system_score_gemma":0.00004250675,"threshold_uncertainty_score":0.70430064},"labels":[],"label_agreement":null},{"id":"W2794475670","doi":"10.1038/s41396-018-0101-5","title":"Drinking water microbiome assembly induced by water stagnation","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":232,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"American Water (Canada)","funders":"University of Illinois at Urbana-Champaign; Alfred P. Sloan Foundation","keywords":"Biology; Water quality; Microbiome; Water supply; Ecosystem; Ecology; Environmental science; Environmental engineering","score_opus":0.012847017015676518,"score_gpt":0.23394866583477475,"score_spread":0.22110164881909822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794475670","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99418104,0.000002808241,0.000107358814,0.002939784,0.00036202953,0.00005607393,9.4820297e-7,0.000011230685,0.0023387298],"genre_scores_gemma":[0.99740887,0.000005150509,0.000062369894,0.0013565683,0.00017530317,0.0000010347295,0.0000119853,0.000008188559,0.0009705536],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999052,0.00030234864,0.00015771159,0.00008888081,0.00007844282,0.00032063675],"domain_scores_gemma":[0.999696,0.000026659145,0.000046675603,0.00017463714,0.000013735642,0.000042294152],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00072639727,0.0000883042,0.000087566536,0.00002233139,0.00086647336,0.000044648557,0.00043988242,0.0000851777,0.015127509],"category_scores_gemma":[0.000005105172,0.000042281303,0.000037803868,0.000039473918,0.0002043746,0.00016755603,0.00029219882,0.00041801445,0.0027345892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014856945,0.000026554802,0.00024322755,3.8633866e-7,0.000011705404,7.0926075e-7,0.0019810318,0.000007777224,0.97887814,0.000005062703,0.018344942,0.0004855924],"study_design_scores_gemma":[0.0002843374,0.00021016023,0.004685954,0.000004449639,0.000013451355,0.00012557356,0.000076937875,0.000036395664,0.9195689,0.0031469206,0.07171296,0.00013392846],"about_ca_topic_score_codex":0.000080731515,"about_ca_topic_score_gemma":0.00020744815,"teacher_disagreement_score":0.05930923,"about_ca_system_score_codex":0.00007965738,"about_ca_system_score_gemma":0.0000041940857,"threshold_uncertainty_score":0.99804187},"labels":[],"label_agreement":null},{"id":"W2794529768","doi":"10.1038/s41396-018-0096-y","title":"Global negative effects of nitrogen deposition on soil microbes","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":698,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University","funders":"National Key Research and Development Program of China; Doctorate Fellowship Foundation of Nanjing Forestry University; Chinese Government Scholarship; Priority Academic Program Development of Jiangsu Higher Education Institutions; Government of Jiangsu Province; Nanjing Forestry University","keywords":"Biomass (ecology); Ecosystem; Terrestrial ecosystem; Biology; Deposition (geology); Environmental chemistry; Nitrogen; Soil microbiology; Microbial population biology; Soil respiration; Agronomy; Respiration; Soil carbon; Ecology; Bacteria; Botany; Soil water; Chemistry; Sediment","score_opus":0.0069446908162192275,"score_gpt":0.2129095525747727,"score_spread":0.20596486175855347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794529768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975935,0.000079390746,0.000012557731,0.0010672031,0.00018594539,0.000061020964,0.0000074915583,0.000012218032,0.0009806355],"genre_scores_gemma":[0.9988002,0.000019154582,0.000047223282,0.00052146864,0.0005840363,0.0000010998139,0.0000015066428,4.956521e-7,0.000024771483],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938196,0.00011842594,0.0001102548,0.0000733773,0.00016772478,0.00014827125],"domain_scores_gemma":[0.99956375,0.00014620909,0.000113128866,0.000031174797,0.00009115437,0.000054577613],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014854541,0.00007878588,0.00009476576,0.0000051776738,0.00022350406,0.00003573484,0.00018875676,0.000045147,0.00004370385],"category_scores_gemma":[0.00003428097,0.000022709512,0.00009930874,0.0001622001,0.000110919405,0.000039945535,0.000029003282,0.00009557208,0.000022497368],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038418264,0.00024639873,0.014864879,0.000010046556,0.00016347518,0.000019882422,0.000513329,0.000022227536,0.90003353,0.0009034939,0.004523838,0.078314684],"study_design_scores_gemma":[0.0006696854,0.0031288331,0.293629,0.00011679113,0.00011174029,0.00042306673,0.0005302946,0.00092363637,0.6732353,0.02666962,0.00029024848,0.00027179424],"about_ca_topic_score_codex":0.00013534084,"about_ca_topic_score_gemma":0.00050319236,"teacher_disagreement_score":0.27876413,"about_ca_system_score_codex":0.000034524226,"about_ca_system_score_gemma":0.000007649902,"threshold_uncertainty_score":0.1719035},"labels":[],"label_agreement":null},{"id":"W2794885494","doi":"10.1038/s41396-018-0108-y","title":"Thermophilic endospores associated with migrated thermogenic hydrocarbons in deep Gulf of Mexico marine sediments","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Petroleum seep; Deep sea; Biology; Thermophile; Biological dispersal; Petroleum; Oceanography; Sediment; Ecology; Bacteria; Geology; Paleontology; Methane; Fishery; Population","score_opus":0.008539972002282953,"score_gpt":0.2122409672430824,"score_spread":0.20370099524079943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794885494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99350005,0.000018607456,0.000015401618,0.0003739041,0.000064409876,0.00009805673,0.000001825651,0.0000076220604,0.005920104],"genre_scores_gemma":[0.999359,0.000022957895,0.000029403203,0.0003670553,0.000033182045,0.000001985561,0.0000057962557,0.000010052314,0.00017058296],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988204,0.00047683693,0.00022639295,0.000093831324,0.00012565553,0.00025687055],"domain_scores_gemma":[0.9993703,0.00013404674,0.00021732243,0.00022549112,0.000008697165,0.000044139357],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005994593,0.00011177853,0.00017887929,0.00003604351,0.00022313737,0.0000069895223,0.00049958884,0.00007846295,0.0051700617],"category_scores_gemma":[0.000037452795,0.00006625434,0.000044569468,0.00025938344,0.0005764176,0.000063908534,0.00019299821,0.00042368186,0.000061402716],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007075813,0.0007977893,0.5363081,0.0000019804966,0.0004111518,0.00003055253,0.0074952208,0.00089444406,0.4474234,0.000054514818,0.0021199004,0.0037553683],"study_design_scores_gemma":[0.00096499245,0.00059115945,0.97910416,0.000019057881,0.00003808903,0.0000801535,0.00012639431,0.0005279186,0.010243849,0.007980569,0.00019870258,0.00012492923],"about_ca_topic_score_codex":0.00054387545,"about_ca_topic_score_gemma":0.010033952,"teacher_disagreement_score":0.4427961,"about_ca_system_score_codex":0.00008657238,"about_ca_system_score_gemma":0.000021034002,"threshold_uncertainty_score":0.99573934},"labels":[],"label_agreement":null},{"id":"W2807433195","doi":"10.1038/s41396-018-0149-2","title":"Decrypting the sulfur cycle in oceanic oxygen minimum zones","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal ecosystems","field":"Earth and Planetary Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Research Foundation; Agouron Institute; Danmarks Grundforskningsfond; Villum Fonden","keywords":"Biology; Sulfur; Sulfur cycle; Oxygen; Paleontology; Bacteria","score_opus":0.012447588622386532,"score_gpt":0.2089596913873023,"score_spread":0.19651210276491576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2807433195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9670894,0.0002746736,0.000053651027,0.0018561789,0.00051283,0.00006951094,0.000003054498,0.000009540269,0.030131163],"genre_scores_gemma":[0.9975666,0.000047889807,0.000053239553,0.00047657522,0.0011404937,2.2059295e-7,0.0000012727052,0.0000027788012,0.0007109727],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990174,0.00015658911,0.00024039575,0.000087646535,0.00021582383,0.0002821099],"domain_scores_gemma":[0.9994867,0.00014808812,0.00011221863,0.00015371769,0.00003350011,0.000065806256],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00113035,0.00008352184,0.000100739446,0.000039875587,0.00042942996,0.000149252,0.00043857098,0.00002806538,0.0021915569],"category_scores_gemma":[0.00004688619,0.00003892473,0.00005047902,0.00018204268,0.00006777232,0.00014148385,0.000029673747,0.00026485883,0.00043745912],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024028971,0.000062310326,0.5037163,0.000030419167,0.00012333803,0.0001362817,0.008790076,0.0018887458,0.00027161516,0.0007198099,0.01969098,0.46432984],"study_design_scores_gemma":[0.0005950957,0.0003351534,0.86595523,0.00007440691,0.000025549201,0.0013699412,0.0045891013,0.06705027,0.000095544645,0.0152869625,0.04435523,0.00026749945],"about_ca_topic_score_codex":0.0013905044,"about_ca_topic_score_gemma":0.009042365,"teacher_disagreement_score":0.46406236,"about_ca_system_score_codex":0.0000037384577,"about_ca_system_score_gemma":0.00005280153,"threshold_uncertainty_score":0.9987206},"labels":[],"label_agreement":null},{"id":"W2810551560","doi":"10.1038/s41396-018-0166-1","title":"Factors influencing bacterial microbiome composition in a wild non-human primate community in Taï National Park, Côte d’Ivoire","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Max-Planck-Gesellschaft; Deutsche Forschungsgemeinschaft; Robert Koch Institut; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology; Canadian Institutes of Health Research; Ministry of Environment; University of Connecticut; Deutscher Akademischer Austauschdienst; National Science Foundation","keywords":"Biology; Microbiome; Sympatric speciation; Ecology; Biological dispersal; Troglodytes; Phylogenetic tree; Interspecific competition; Ecosystem; Zoology; Evolutionary biology; Population; Genetics","score_opus":0.024012684031183593,"score_gpt":0.32520672139271695,"score_spread":0.30119403736153333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810551560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99906,0.000023771829,0.000028846109,0.00032188595,0.00019244205,0.000120141056,0.000021492951,0.0000035926319,0.00022783916],"genre_scores_gemma":[0.9989906,0.00001862802,0.00009300015,0.00033990876,0.00041086454,0.000001975251,0.000103517756,0.000013063256,0.000028438599],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886525,0.0003165928,0.00033846434,0.00010944779,0.000099872785,0.0002703726],"domain_scores_gemma":[0.99949783,0.000015706737,0.00016806558,0.00015907666,0.00010245103,0.00005686423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008178423,0.00013363724,0.00014919117,0.000107222164,0.00046572075,0.000063993226,0.00028436605,0.00012100358,0.0000403711],"category_scores_gemma":[0.000013688458,0.000101019126,0.00005411172,0.00010532813,0.00013677467,0.000013278622,0.00011730406,0.0004998457,0.0000074415693],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058854024,0.00009308865,0.0071827327,0.000010993485,0.000013654144,0.0000010648021,0.0015648296,0.000016452987,0.9903319,0.000008929943,0.0006663062,0.00005121732],"study_design_scores_gemma":[0.002317956,0.0006274808,0.70242536,0.00022855462,0.000014194446,0.0002712271,0.0006778309,0.000038149774,0.28952572,0.00044383566,0.0030915441,0.00033817632],"about_ca_topic_score_codex":0.00022738511,"about_ca_topic_score_gemma":0.00095991377,"teacher_disagreement_score":0.70080614,"about_ca_system_score_codex":0.000131227,"about_ca_system_score_gemma":0.0001977252,"threshold_uncertainty_score":0.41194406},"labels":[],"label_agreement":null},{"id":"W2883748237","doi":"10.1038/s41396-018-0215-9","title":"Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the <i>Castor canadensis</i> fecal microbiome","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Tula Foundation; Genome Canada; University of British Columbia; Canadian Institute for Advanced Research","keywords":"Biology; Metagenomics; Microbiome; Feces; Microbial ecology; Gut microbiome; Computational biology; Evolutionary biology; Microbiology; Ecology; Genetics; Bacteria; Gene","score_opus":0.04164739197052236,"score_gpt":0.2814455343798142,"score_spread":0.23979814240929181,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2883748237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9880577,0.0005055435,0.007706549,0.0031549488,0.00015243607,0.00013835554,0.000013949236,0.0000024511708,0.0002680642],"genre_scores_gemma":[0.99636555,0.00015292171,0.00017229166,0.0015865407,0.000695531,0.0000046690834,0.000015515876,0.000011158052,0.0009958285],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.999124,0.00012740084,0.00019715453,0.00014491031,0.00018932798,0.00021722513],"domain_scores_gemma":[0.9995143,0.000024811518,0.00008125052,0.00018342232,0.00013178981,0.000064447464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008648777,0.00009608201,0.00008579764,0.00006515962,0.00029833356,0.00009182729,0.00021039585,0.00007823594,0.00008071839],"category_scores_gemma":[0.00008678774,0.00005764729,0.000046108606,0.0001390329,0.00015406776,0.0000072536227,0.000069202615,0.0001978874,0.0000088519955],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009077932,0.000028737028,0.0003125158,0.000003309115,0.00003501023,0.0000032392827,0.00012965125,0.000043348376,0.98921746,0.0003345735,0.008878804,0.0009225666],"study_design_scores_gemma":[0.005058733,0.0011729097,0.093457766,0.00006889832,0.00013701145,0.007538323,0.0019206819,0.0027554876,0.38705507,0.001762722,0.49821585,0.0008565503],"about_ca_topic_score_codex":0.00013914616,"about_ca_topic_score_gemma":0.00093103375,"teacher_disagreement_score":0.6021624,"about_ca_system_score_codex":0.000030718104,"about_ca_system_score_gemma":0.00014980971,"threshold_uncertainty_score":0.23507883},"labels":[],"label_agreement":null},{"id":"W2883944638","doi":"10.1038/s41396-018-0230-x","title":"Microbiome functioning depends on individual and interactive effects of the environment and community structure","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University; Natural Resources Canada","funders":"Gatsby Charitable Foundation; Natural Environment Research Council; Sight Research UK","keywords":"Biology; Ecosystem; Abundance (ecology); Ecology; Biodiversity; Biological dispersal; Microbiome; Community structure; Habitat; Environmental change; Climate change; Population","score_opus":0.0071061550169420114,"score_gpt":0.20780577919119006,"score_spread":0.20069962417424805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2883944638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991955,0.00002045813,0.000023528772,0.00028907016,0.00017564197,0.000070731236,0.0000053875856,0.0000017903163,0.000217887],"genre_scores_gemma":[0.99933976,0.000011616553,0.000046896217,0.0005053476,0.000034952416,4.846616e-7,0.0000010712979,0.0000036273827,0.000056254008],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986848,0.0010064758,0.00009228367,0.00005297257,0.000059157694,0.00010430247],"domain_scores_gemma":[0.9992847,0.00037950024,0.00011990997,0.0001855482,0.0000032064595,0.000027163465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037888074,0.00007453217,0.00008677341,0.000014365718,0.0012592319,0.000016038208,0.0002802832,0.000052416595,0.00079636567],"category_scores_gemma":[0.000033161126,0.000040244642,0.000021285181,0.00003768188,0.0008352961,0.000059929258,0.00055087404,0.0009517239,0.000009894222],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012999913,0.00012459453,0.022649074,0.000009812373,0.00011327098,8.3231896e-7,0.017459638,0.000089111345,0.9488004,0.000034422697,0.0018268576,0.008761974],"study_design_scores_gemma":[0.00038760775,0.0006753664,0.95114475,0.000026394919,0.000043459215,0.0001866599,0.00050210697,0.000011027826,0.04291309,0.002618003,0.0014228954,0.000068602254],"about_ca_topic_score_codex":0.000091190675,"about_ca_topic_score_gemma":0.00021478163,"teacher_disagreement_score":0.9284957,"about_ca_system_score_codex":0.000033353463,"about_ca_system_score_gemma":0.000003867232,"threshold_uncertainty_score":0.9685121},"labels":[],"label_agreement":null},{"id":"W2884915932","doi":"10.1038/s41396-018-0211-0","title":"The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Environment Research Council; Natural Sciences and Engineering Research Council of Canada; China Scholarship Council; University of Alberta; Deutsche Forschungsgemeinschaft; Sight Research UK","keywords":"Biology; Vertebrate; Allopatric speciation; Lactobacillus reuteri; Lactobacillus crispatus; Lactobacillus gasseri; Context (archaeology); Evolutionary biology; Ecology; Zoology; Lactobacillus; Genetics; Bacteria; Gene; Population","score_opus":0.017438606541823942,"score_gpt":0.2639842802800291,"score_spread":0.24654567373820518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884915932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99647796,0.0001955912,0.0006514106,0.0021456713,0.00009460403,0.0001066796,0.000007906072,0.0000021066544,0.0003180962],"genre_scores_gemma":[0.99890393,0.000063813924,0.00031855504,0.00013460153,0.0002487062,0.0000024462315,0.000004462202,0.000003921375,0.0003195861],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990277,0.00030748648,0.00026553197,0.00008773561,0.00011940776,0.00019213364],"domain_scores_gemma":[0.99946296,0.00006292019,0.00017258197,0.00017126669,0.0001034392,0.000026806862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014241679,0.00007663354,0.00007327771,0.00002158816,0.0003512812,0.000036047113,0.00030765968,0.000047971596,0.00001802131],"category_scores_gemma":[0.00018195566,0.000033042896,0.000061371175,0.00007257823,0.0003221549,0.000004331656,0.00003138643,0.00024844697,0.000007771431],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001138739,0.0000889013,0.005051305,0.0000036010601,0.000006677801,0.000001323194,0.0006274308,0.000048756778,0.9891696,0.00081072643,0.00382985,0.00024796335],"study_design_scores_gemma":[0.0008582484,0.0030535352,0.91495544,0.000035608224,0.000024134164,0.002049138,0.012861823,0.00018863835,0.05371218,0.0014238905,0.010678794,0.00015856116],"about_ca_topic_score_codex":0.000027983637,"about_ca_topic_score_gemma":0.00033944202,"teacher_disagreement_score":0.9354574,"about_ca_system_score_codex":0.00003842434,"about_ca_system_score_gemma":0.00012546146,"threshold_uncertainty_score":0.27018064},"labels":[],"label_agreement":null},{"id":"W2885280423","doi":"10.1038/s41396-018-0257-z","title":"Following the terrestrial tracks of<i>Caulobacter</i>- redefining the ecology of a reputed aquatic oligotroph","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Western Canada Research Grid; Compute Canada","keywords":"Biology; Holdfast; Ecology; Caulobacter crescentus; Metagenomics; Microbial ecology; Aquatic ecosystem; Soil microbiology; Biological dispersal; Botany; Soil water; Bacteria; Gene; Population","score_opus":0.01130470587435918,"score_gpt":0.2590253914454677,"score_spread":0.24772068557110855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885280423","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952545,0.00042023015,0.0010481977,0.0021650533,0.000507065,0.0001451932,0.0000060640755,0.0000025170164,0.00045118798],"genre_scores_gemma":[0.99789643,0.00016326121,0.00031692686,0.00030698,0.0011825047,0.0000060130283,0.0000026263317,0.000010164066,0.00011510561],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902683,0.00022547554,0.00036235395,0.00010580657,0.000110404544,0.00016914422],"domain_scores_gemma":[0.9990884,0.000073576455,0.00034183852,0.00042320817,0.000044754917,0.000028190356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007844818,0.00009046796,0.00015647821,0.000018330602,0.00032017694,0.000025765754,0.00053881586,0.00007152154,0.000021302638],"category_scores_gemma":[0.00018785246,0.000042237803,0.00018621136,0.000109508044,0.0002723176,0.000003343831,0.00009308609,0.00018352456,0.000004601706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007954909,0.000032804845,0.00017505238,0.0000020971195,0.00013813528,6.0924907e-7,0.0005142928,0.000013316297,0.9919629,0.0002310217,0.003973188,0.0028770426],"study_design_scores_gemma":[0.0037670932,0.0012217549,0.025420014,0.000113217364,0.0009719537,0.000850932,0.0017552404,0.00027331294,0.7784401,0.006724509,0.18002202,0.00043983848],"about_ca_topic_score_codex":0.000028106853,"about_ca_topic_score_gemma":0.000029641631,"teacher_disagreement_score":0.21352278,"about_ca_system_score_codex":0.000004408061,"about_ca_system_score_gemma":0.00010445097,"threshold_uncertainty_score":0.24625745},"labels":[],"label_agreement":null},{"id":"W2885488593","doi":"10.1038/s41396-018-0254-2","title":"Extrachromosomal circular elements targeted by CRISPR-Cas in <i>Dehalococcoides mccartyi</i> are linked to mobilization of reductive dehalogenase genes","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Strategic Environmental Research and Development Program; Ontario Genomics Institute; Government of Ontario; Canadian Institutes of Health Research; Ontario Genomics; Genome Canada; Government of Canada; U.S. Department of Defense","keywords":"Biology; Genome; Extrachromosomal DNA; Prophage; CRISPR; Dehalogenase; Genetics; Genomic island; Metagenomics; Horizontal gene transfer; Gene; Bacteriophage; Escherichia coli","score_opus":0.009534215766656716,"score_gpt":0.2539120589980622,"score_spread":0.24437784323140546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885488593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99566185,0.0013174771,0.001748867,0.00061244896,0.0003129345,0.00026554533,0.000049450882,0.0000061469027,0.000025286621],"genre_scores_gemma":[0.9978417,0.0004065733,0.00085299433,0.00023104444,0.00054855715,0.000013346988,0.00003621315,0.000022776901,0.000046795703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987292,0.00013461422,0.0004306165,0.0002587142,0.000150164,0.00029667534],"domain_scores_gemma":[0.99906975,0.0000070809183,0.00027157567,0.00031431607,0.00025361724,0.000083670115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035398937,0.00016570935,0.00019409972,0.00007938044,0.00012686082,0.000028339491,0.0003570546,0.0002261814,0.000041243115],"category_scores_gemma":[0.00008876399,0.00012680521,0.000075230484,0.00020114548,0.00019015408,0.000005833194,0.00012858477,0.0001648665,0.000006250703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010284822,0.000105458275,0.0026449265,0.0000060567895,0.000054141226,0.000003946156,0.00012518713,0.000040082494,0.9931731,0.000006605153,0.0014320166,0.002305632],"study_design_scores_gemma":[0.0005181372,0.0006742916,0.008123147,0.000022743734,0.000026538042,0.00008347661,0.00029715692,0.000039833543,0.9816553,0.00018270245,0.008219041,0.00015761933],"about_ca_topic_score_codex":0.000020087042,"about_ca_topic_score_gemma":0.000058703743,"teacher_disagreement_score":0.011517787,"about_ca_system_score_codex":0.000031662723,"about_ca_system_score_gemma":0.00007230047,"threshold_uncertainty_score":0.51709664},"labels":[],"label_agreement":null},{"id":"W2886541467","doi":"10.1038/s41396-018-0236-4","title":"Microbial connectivity and sorting in a High Arctic watershed","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Center for Northern Studies; Institut National de la Recherche Scientifique","funders":"Natural Resources Canada; Natural Sciences and Engineering Research Council of Canada; ArcticNet; Parks Canada","keywords":"Arctic; Snow; Ecology; Permafrost; Habitat; Ecosystem; Biodiversity; Glacier; Watershed; Cryosphere; Aquatic ecosystem; Biology; Environmental science; Physical geography; Oceanography; Sea ice; Geography; Geology","score_opus":0.010982109344369977,"score_gpt":0.22430196950082815,"score_spread":0.21331986015645818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2886541467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975909,0.0000056418044,0.000031963278,0.0017334092,0.00014010842,0.000046954327,5.3303125e-7,0.0000039516935,0.0004465654],"genre_scores_gemma":[0.9989242,0.000007906002,0.0001169991,0.00074547296,0.00011434952,5.8672623e-7,6.2846976e-7,0.0000035585542,0.000086313914],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992307,0.00034441103,0.0001236433,0.00007396558,0.000033954788,0.00019334181],"domain_scores_gemma":[0.9996878,0.000103283026,0.00006871409,0.00010276811,0.0000049630626,0.0000324679],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007183219,0.000058905276,0.00009445049,0.000016477841,0.00040652454,0.00001875022,0.00018205335,0.00004486384,0.0036687248],"category_scores_gemma":[0.000049637958,0.000038680406,0.00001798814,0.000058571055,0.00043520363,0.00008353733,0.00020021126,0.00039427623,0.0001276348],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021236304,0.00012408862,0.18890388,0.0000052396613,0.00002649285,0.000013751665,0.008037227,0.00013394888,0.7949286,0.0001972836,0.004395376,0.003021752],"study_design_scores_gemma":[0.0007500828,0.00025377652,0.96277964,0.00001465425,0.000012874468,0.000546831,0.000209707,0.00014767937,0.004573538,0.029035633,0.001543356,0.00013219831],"about_ca_topic_score_codex":0.0009144748,"about_ca_topic_score_gemma":0.004304086,"teacher_disagreement_score":0.790355,"about_ca_system_score_codex":0.00005381998,"about_ca_system_score_gemma":0.000006539358,"threshold_uncertainty_score":0.99724203},"labels":[],"label_agreement":null},{"id":"W2888694607","doi":"10.1038/s41396-018-0256-0","title":"Seasonality of the gut microbiota of free-ranging white-faced capuchins in a tropical dry forest","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Primate Behavior and Ecology","field":"Psychology","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Centers for Disease Control and Prevention; Alberta Children's Hospital Research Institute; Public Health Agency; Washington University in St. Louis; Public Health Agency of Canada; University of Calgary; Eppley Foundation for Research","keywords":"Biology; Tropical forest; Seasonality; Tropical and subtropical dry broadleaf forests; White (mutation); Dry season; Ecology","score_opus":0.022562742060318913,"score_gpt":0.30673167229137743,"score_spread":0.2841689302310585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888694607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942791,0.00007394233,0.00011422744,0.0021716694,0.0009099726,0.00011430987,0.000029121775,0.000005646988,0.0023020473],"genre_scores_gemma":[0.999193,0.000004236565,0.00009525906,0.00021326815,0.00017111342,0.0000024037583,6.646321e-7,0.000010974888,0.00030907243],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99868506,0.0003545355,0.00040599518,0.00011107359,0.00013525439,0.00030808293],"domain_scores_gemma":[0.9990672,0.00009189992,0.00025344078,0.00047536776,0.00006799624,0.000044125463],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005496109,0.00010022846,0.00025946565,0.0000402261,0.00012518828,0.000010103588,0.00072825246,0.00011469945,0.0014737531],"category_scores_gemma":[0.000067813795,0.000056863002,0.00015199515,0.00018945837,0.00036322398,0.000037740523,0.0001632652,0.0004622153,0.000021334963],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016170775,0.00020030589,0.95970494,0.0000060296125,0.00006253541,0.0000064698525,0.0048004882,0.000026439355,0.030299984,0.0010841187,0.0032249864,0.00042197268],"study_design_scores_gemma":[0.0009263097,0.00009244953,0.99645174,0.000028195576,0.00006107467,0.00012404859,0.00047630272,0.000087634595,0.0004770373,0.00089801435,0.00031772887,0.000059472983],"about_ca_topic_score_codex":0.00020646825,"about_ca_topic_score_gemma":0.0013150803,"teacher_disagreement_score":0.036746766,"about_ca_system_score_codex":0.000058588343,"about_ca_system_score_gemma":0.00006944181,"threshold_uncertainty_score":0.99943906},"labels":[],"label_agreement":null},{"id":"W2888979881","doi":"10.1038/s41396-018-0263-1","title":"In situ development of a methanotrophic microbiome in deep-sea sediments","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Leibniz-Gemeinschaft; Sixth Framework Programme; Max-Planck-Gesellschaft; Alfred P. Sloan Foundation; Deutsche Forschungsgemeinschaft; Institut Français de Recherche pour l'Exploitation de la Mer; Alberta Innovates - Technology Futures; Universiteit Gent; Woods Hole Oceanographic Institution","keywords":"Biology; In situ; Microbiome; Geomicrobiology; Deep sea; Metagenomics; Ecology; Microbial ecology; Oceanography; Computational biology; Bacteria; Paleontology; Bioinformatics; Fishery; Environmental biotechnology; Genetics; Gene","score_opus":0.011918765205836826,"score_gpt":0.23944398927734925,"score_spread":0.22752522407151243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888979881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956505,0.00011016284,0.00019085869,0.00041569193,0.0002120102,0.00009020347,3.3720534e-7,0.0000022740967,0.0033279706],"genre_scores_gemma":[0.9954877,0.00003009891,0.0038715955,0.00018699907,0.000051547075,0.000002050818,4.2083724e-7,0.000008023642,0.0003615582],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887,0.00013154402,0.0003913694,0.000114308474,0.0002257923,0.00026694345],"domain_scores_gemma":[0.99963665,0.000025446325,0.00014783563,0.00012154649,0.0000073052393,0.000061205785],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010549811,0.00009523644,0.00014326647,0.00008623645,0.000087558474,0.000012198788,0.00030689465,0.00005260675,0.0019217024],"category_scores_gemma":[0.0000102294825,0.000058182457,0.000031413107,0.00037345535,0.00015186174,0.00010731532,0.0001430028,0.00028171565,0.00031813633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007023331,0.0002080698,0.009248665,0.0000062537592,0.000040902734,0.000026683663,0.012826939,0.0009235444,0.9697692,0.000015073424,0.00038684733,0.0064776256],"study_design_scores_gemma":[0.005204298,0.00050824333,0.28155845,0.00031871407,0.00005582705,0.00050045014,0.0011078655,0.0020691024,0.67221874,0.012353716,0.023301894,0.00080266857],"about_ca_topic_score_codex":0.000060770504,"about_ca_topic_score_gemma":0.00018460135,"teacher_disagreement_score":0.2975504,"about_ca_system_score_codex":0.00018194753,"about_ca_system_score_gemma":0.000027069722,"threshold_uncertainty_score":0.99899065},"labels":[],"label_agreement":null},{"id":"W2890474477","doi":"10.1038/s41396-018-0270-2","title":"Soil exchange rates of COS and CO18O differ with the diversity of microbial communities and their carbonic anhydrase enzymes","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Enzyme function and inhibition","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"SLAC National Accelerator Laboratory; Directorate for Geosciences; Biological and Environmental Research; U.S. Department of Energy; European Commission; Division of Atmospheric and Geospace Sciences; Joint Genome Institute; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Office of Science; Agence Nationale de la Recherche; European Research Council; National Science Foundation","keywords":"Biology; Carbonic anhydrase; Enzyme; Diversity (politics); Biochemistry; Ecology; Microbiology; Botany; Anthropology","score_opus":0.012983164772109104,"score_gpt":0.20885853777647093,"score_spread":0.1958753730043618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2890474477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99779594,0.0011995505,0.00014045349,0.00060365326,0.00004051507,0.000046353656,0.000017563016,0.0000012888539,0.00015468562],"genre_scores_gemma":[0.998786,0.00063266273,0.000008411343,0.00026461534,0.00014180651,5.5720795e-7,0.000004688422,0.000004182181,0.00015711524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996598,0.00010583597,0.000073674746,0.000041348096,0.00004868753,0.000070701666],"domain_scores_gemma":[0.9996612,0.000019989517,0.000097062606,0.000110666835,0.000089033434,0.000022016073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020364403,0.000064990956,0.00008066738,0.000015215201,0.00029687173,0.000013845886,0.00008523267,0.000034987148,0.000025464515],"category_scores_gemma":[0.0000055706987,0.0000306497,0.000023988841,0.000022932685,0.00056269765,0.000004529514,0.00014951978,0.00009093319,1.3723304e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045258366,0.00005105024,0.009251059,0.000024531979,0.00011455176,4.5604835e-7,0.0065442002,0.000002915037,0.9721745,0.000051186715,0.010821817,0.00051114155],"study_design_scores_gemma":[0.00093570835,0.0008922688,0.012345296,0.00004296864,0.000046645062,0.00015313645,0.005016724,0.00004247463,0.97794384,0.00007848732,0.0024215674,0.000080904705],"about_ca_topic_score_codex":0.000078112316,"about_ca_topic_score_gemma":0.00039193736,"teacher_disagreement_score":0.00840025,"about_ca_system_score_codex":0.0000029442679,"about_ca_system_score_gemma":0.000016750699,"threshold_uncertainty_score":0.22833274},"labels":[],"label_agreement":null},{"id":"W2904061783","doi":"10.1038/s41396-018-0334-3","title":"Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Peatlands and Wetlands Ecology","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; Tula Foundation; University of British Columbia","funders":"Hakai Institute; U.S. Forest Service; University of British Columbia; University of Alberta; Tula Foundation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; McGill University; Génome Québec; U.S. Department of Agriculture","keywords":"Biology; Biogeochemical cycle; Carbon cycle; Ecology; Nutrient cycle; Cycling; Phylotype; Microbial population biology; Bog; Temperate climate; Ecosystem; Peat; 16S ribosomal RNA; Bacteria; Forestry","score_opus":0.0152024834391424,"score_gpt":0.23663837664394094,"score_spread":0.22143589320479853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2904061783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984939,0.00001349668,0.000010755172,0.00096745405,0.000055610322,0.000067370784,0.00000388053,0.000002187157,0.0003853343],"genre_scores_gemma":[0.99960136,0.000037213274,0.00011347444,0.00010018339,0.00009173885,0.0000015641854,0.0000060289913,0.0000026883265,0.000045715904],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993907,0.00009116417,0.00018477964,0.00009234229,0.00007923208,0.00016177664],"domain_scores_gemma":[0.99976385,0.00004143909,0.00008905351,0.00004969429,0.0000072245402,0.000048770533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034993773,0.00006448399,0.0001158021,0.000044532422,0.00012763756,0.000020795329,0.00006628804,0.000060111266,0.00027131542],"category_scores_gemma":[0.00003218357,0.00004131038,0.000014801277,0.00009631189,0.00033192392,0.0001411809,0.00007839865,0.0001490009,0.0000026710866],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000101435144,0.000029308638,0.977005,0.0000010184386,0.000003854145,0.000001515647,0.00088321924,0.00058423035,0.020134958,0.000061086634,0.0002548065,0.00093958696],"study_design_scores_gemma":[0.0007759766,0.00011803707,0.9883543,0.000009315346,0.0000047234516,0.000055733006,0.00006130828,0.006146735,0.00040494488,0.003881773,0.00013732075,0.000049823364],"about_ca_topic_score_codex":0.00021634011,"about_ca_topic_score_gemma":0.006071358,"teacher_disagreement_score":0.019730013,"about_ca_system_score_codex":0.000051907966,"about_ca_system_score_gemma":0.000012613218,"threshold_uncertainty_score":0.33879602},"labels":[],"label_agreement":null},{"id":"W2904788106","doi":"10.1038/s41396-018-0331-6","title":"The soil organic matter decomposition mechanisms in ectomycorrhizal fungi are tuned for liberating soil organic nitrogen","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":223,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Vetenskapsrådet; Knut och Alice Wallenbergs Stiftelse; Lunds Universitet; Canadian Light Source","keywords":"Biology; Soil organic matter; Organic matter; Decomposition; Nitrogen; Ectomycorrhiza; Botany; Nitrogen cycle; Ecosystem; Mycorrhiza; Litter; Symbiosis; Ecology; Soil water; Chemistry; Bacteria","score_opus":0.009826976198429843,"score_gpt":0.2210298378563692,"score_spread":0.21120286165793936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2904788106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99090147,0.000232663,0.0007108716,0.006457198,0.0008560163,0.00022843946,0.00012590193,0.000029371186,0.00045804938],"genre_scores_gemma":[0.99608433,0.00021210403,0.00013359232,0.0012010093,0.0016835756,0.00001543875,0.00006998856,0.0000041675435,0.00059578824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998736,0.00018350313,0.00033684974,0.00016395259,0.00018585584,0.00039383004],"domain_scores_gemma":[0.99777585,0.0016948442,0.00022858642,0.00007398987,0.00014224638,0.00008449399],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00062761805,0.0001567609,0.0001527118,0.00001835583,0.001561816,0.00037232338,0.00040746058,0.00008388761,0.007350723],"category_scores_gemma":[0.00010727652,0.00004842139,0.00012336584,0.00023898899,0.000013097898,0.00017437083,0.000063628744,0.0003584677,0.00091260765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016177846,0.00004985741,0.00618383,0.0000030963877,0.000037813785,0.0000053522685,0.000301471,0.000009976257,0.97091866,0.00029429703,0.019656172,0.0023776742],"study_design_scores_gemma":[0.0014101198,0.0031712544,0.037677698,0.0009458428,0.00041283635,0.009002882,0.011136256,0.015896825,0.5338097,0.34463757,0.03983979,0.002059169],"about_ca_topic_score_codex":0.000090693,"about_ca_topic_score_gemma":0.0018083956,"teacher_disagreement_score":0.43710893,"about_ca_system_score_codex":0.000055515524,"about_ca_system_score_gemma":0.00002193574,"threshold_uncertainty_score":0.9998653},"labels":[],"label_agreement":null},{"id":"W2906762386","doi":"10.1038/s41396-018-0333-4","title":"An interspecies malate–pyruvate shuttle reconciles redox imbalance in an anaerobic microbial community","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Government of Ontario","keywords":"Biology; Flux balance analysis; Biochemistry; Metabolic pathway; Metabolomics; Metabolite; Metabolic network; Metabolic flux analysis; Amino acid; Malate dehydrogenase; Citric acid cycle; Metabolism; Enzyme; Bioinformatics","score_opus":0.008481873061575544,"score_gpt":0.23821365651765844,"score_spread":0.2297317834560829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2906762386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984061,0.0002522313,0.0000862808,0.0003545559,0.00070515857,0.00008324921,0.000007496856,0.000010686702,0.00009423794],"genre_scores_gemma":[0.99788314,0.00025142723,0.00045579186,0.00013661724,0.000699644,0.0000011998524,0.000026698994,0.00001613897,0.0005293329],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991299,0.00026150627,0.00020223882,0.00014105278,0.00006113587,0.0002041525],"domain_scores_gemma":[0.9993502,0.0000033872639,0.00008792185,0.00044037733,0.00006349706,0.000054647473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007671494,0.00012058633,0.00013506139,0.00004701251,0.00012411951,0.00006910458,0.0003946075,0.00009012308,0.000056306668],"category_scores_gemma":[0.000023340765,0.00008875384,0.000052527674,0.000077883524,0.00005764684,0.000018250987,0.000052983643,0.00047408836,0.000015217327],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005904622,0.00005820696,0.0013759437,0.000005369178,0.00001423745,7.660579e-7,0.0004427292,0.0007828308,0.99567294,0.000012403983,0.0007808577,0.0007946683],"study_design_scores_gemma":[0.0010566345,0.0009182084,0.06306687,0.00008622198,0.000021072274,0.00044182298,0.0016506988,0.00017808253,0.90418696,0.00013217119,0.027852,0.00040925053],"about_ca_topic_score_codex":0.000070062466,"about_ca_topic_score_gemma":0.00017422196,"teacher_disagreement_score":0.09148598,"about_ca_system_score_codex":0.000026368896,"about_ca_system_score_gemma":0.000032723907,"threshold_uncertainty_score":0.36192766},"labels":[],"label_agreement":null},{"id":"W2910672108","doi":"10.1038/s41396-019-0345-8","title":"Effects of the captive and wild environment on diversity of the gut microbiome of deer mice (<i>Peromyscus maniculatus</i>)","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Peromyscus; Biology; Deer mouse; Captivity; Microbiome; Metagenomics; Zoology; Host (biology); Lachnospiraceae; Ecology; 16S ribosomal RNA; Bacteria; Genetics; Gene","score_opus":0.002637259004517503,"score_gpt":0.1704674826076162,"score_spread":0.1678302236030987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2910672108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848586,0.0005977926,0.000010126159,0.0004527928,0.00014562368,0.00021755288,0.000016063088,4.334457e-7,0.00007377881],"genre_scores_gemma":[0.9991091,0.00028118168,0.000031066887,0.00024185353,0.000032919215,3.4150136e-7,7.008745e-7,0.0000058484334,0.00029700718],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993823,0.00013315088,0.00015289613,0.00009864037,0.00011134627,0.000121638484],"domain_scores_gemma":[0.99942684,0.000025048415,0.00025166603,0.00024447995,0.00002536356,0.000026618549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020519385,0.00008707862,0.00013363682,0.000013149399,0.00013176356,0.0000034332552,0.00030311735,0.00007027893,0.000012009753],"category_scores_gemma":[0.000008252079,0.00004113699,0.00012066793,0.000032003423,0.00015999342,0.0000021815265,0.00039094163,0.00016247522,0.0000019302743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005899013,0.000051505784,0.007164356,0.00004459087,0.00006826268,2.2167343e-7,0.00042194707,0.000041052914,0.99166507,0.00001830438,0.00040473932,0.000060968745],"study_design_scores_gemma":[0.0006287411,0.00021313735,0.2775795,0.000075110394,0.000065063876,0.000045545465,0.000104866915,0.00000200113,0.7202842,0.00003712453,0.00091321935,0.00005150492],"about_ca_topic_score_codex":0.000037431066,"about_ca_topic_score_gemma":0.000006179923,"teacher_disagreement_score":0.27138084,"about_ca_system_score_codex":0.000017727592,"about_ca_system_score_gemma":0.00003403144,"threshold_uncertainty_score":0.16775177},"labels":[],"label_agreement":null},{"id":"W2914208605","doi":"10.1038/s41396-019-0359-2","title":"RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":true,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Joint Genome Institute; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Biology; Gene; Gene expression; Genetics; Botany; Computational biology; Evolutionary biology","score_opus":0.017532881032990732,"score_gpt":0.2054281536574568,"score_spread":0.1878952726244661,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914208605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864,0.00047228354,0.00000145341,0.00029780046,0.00026659152,0.00008915704,0.000003855498,0.000007663207,0.0002212222],"genre_scores_gemma":[0.9991931,0.00011615304,0.00004831716,0.000024624063,0.0005968621,9.571547e-7,0.0000014473774,7.135725e-7,0.00001785642],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990932,0.00011266317,0.00030108806,0.00011047784,0.00018982434,0.00019277538],"domain_scores_gemma":[0.99954736,0.000097605116,0.00021417072,0.00003673328,0.000060216153,0.00004390544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066114514,0.000079029196,0.00013272703,0.000015640391,0.00017364993,0.000098611185,0.00014635718,0.00008410572,0.0003416679],"category_scores_gemma":[0.000019314259,0.000025663916,0.00004151253,0.00018347055,0.000039542978,0.00025297003,0.00003351362,0.00027470122,0.0000071222626],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003527972,0.00002223254,0.027716732,0.0000021276355,0.0000025078778,0.000001194572,0.0001528532,0.000010677129,0.9680575,0.000046424688,0.000040561557,0.00391188],"study_design_scores_gemma":[0.00013547666,0.00010096572,0.65226424,0.000088753906,0.0000027303327,0.00003012989,0.0005988992,0.000040793107,0.34610912,0.00048148725,0.00008570701,0.00006170272],"about_ca_topic_score_codex":0.000077585486,"about_ca_topic_score_gemma":0.000034803845,"teacher_disagreement_score":0.6245475,"about_ca_system_score_codex":0.000031284046,"about_ca_system_score_gemma":0.00000687475,"threshold_uncertainty_score":0.3741024},"labels":[],"label_agreement":null},{"id":"W2914323324","doi":"10.1038/s41396-019-0355-6","title":"Live cell analysis at sea reveals divergent thermal performance between photosynthetic ocean microbial eukaryote populations","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Australian Research Council; Engineering and Physical Sciences Research Council; Department of Education and Training; University of Technology Sydney; Marine National Facility; Australian Government; National Science Foundation","keywords":"Biology; Eukaryote; Photosynthesis; Ecology; Microbial ecology; Algae; Evolutionary biology; Botany; Bacteria; Genetics; Gene; Genome","score_opus":0.012655150776063,"score_gpt":0.2137063669160735,"score_spread":0.2010512161400105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914323324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99867857,0.00017836315,0.00010994699,0.00021126597,0.00018178177,0.00015994467,0.00009847322,0.0000046724103,0.0003769976],"genre_scores_gemma":[0.99644333,0.0001042949,0.000094861774,0.00018149687,0.00032217635,6.002335e-7,0.000087343564,0.000010668404,0.0027552266],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990762,0.00013737343,0.0001951894,0.00018179981,0.00015812268,0.00025130546],"domain_scores_gemma":[0.99934506,0.000011935248,0.0001756905,0.00030668944,0.00006322372,0.00009742029],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003174809,0.00013478646,0.00017244554,0.00005346764,0.0004566783,0.000035903053,0.00040443064,0.00009545546,0.00051311904],"category_scores_gemma":[0.000006696244,0.000100156336,0.00026059794,0.00012237749,0.000053032258,0.000007657044,0.00025026815,0.0001992618,0.00023382765],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058252583,0.000024601588,0.8615737,0.000007671134,0.0003009942,0.0000017146963,0.00023122561,0.002497131,0.13398497,0.0000014852178,0.0012188848,0.00009939191],"study_design_scores_gemma":[0.00047740882,0.00016970807,0.9075128,0.000011330268,0.00064857595,0.000032134933,0.000058390484,0.00023325904,0.08931893,0.00003963452,0.0012697962,0.00022805209],"about_ca_topic_score_codex":0.000024569164,"about_ca_topic_score_gemma":0.000010274021,"teacher_disagreement_score":0.045939103,"about_ca_system_score_codex":0.000040566,"about_ca_system_score_gemma":0.00003949037,"threshold_uncertainty_score":0.5618293},"labels":[],"label_agreement":null},{"id":"W2914883768","doi":"10.1038/s41396-019-0364-5","title":"Defining the role of <i>Parasutterella</i>, a previously uncharacterized member of the core gut microbiota","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":501,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; University of Alberta; Genome British Columbia; Alberta Innovates - Technology Futures; Alberta Innovates; University of Victoria","keywords":"Biology; Gut flora; Computational biology; Core (optical fiber); Genetics; Evolutionary biology; Immunology","score_opus":0.006431909303620495,"score_gpt":0.23720484044301243,"score_spread":0.23077293113939193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914883768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994739,0.002863585,0.000008156606,0.0009672376,0.00025482805,0.000239733,0.00001835637,0.0000018291745,0.00090727845],"genre_scores_gemma":[0.9977283,0.0003728689,0.00007852298,0.0008170389,0.00012121419,0.0000016316633,0.000005992122,0.000016787186,0.0008576506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989936,0.00015789177,0.00035955512,0.00012442887,0.00012260997,0.00024196273],"domain_scores_gemma":[0.99884355,0.00003084517,0.00047158738,0.0005155189,0.00010087982,0.000037608286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005871366,0.00012659915,0.00019892951,0.000015934178,0.000149844,0.000020174086,0.0006037808,0.00009433601,0.00010427729],"category_scores_gemma":[0.00002643343,0.000057440247,0.00020510469,0.00007685724,0.00012799552,0.000003074971,0.00018124831,0.00030106888,0.000018963552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007652813,0.00002625745,0.008436316,0.000018496876,0.000066004664,1.6966057e-7,0.00037774857,0.00001518869,0.98872405,0.00012184674,0.0017651793,0.0003721879],"study_design_scores_gemma":[0.0015927276,0.000369499,0.0981759,0.00023882407,0.00015292646,0.0008781514,0.0006333068,0.00003498885,0.7948704,0.0004491087,0.10236321,0.00024097478],"about_ca_topic_score_codex":0.000023578628,"about_ca_topic_score_gemma":0.000013800349,"teacher_disagreement_score":0.19385369,"about_ca_system_score_codex":0.000011450596,"about_ca_system_score_gemma":0.00018927346,"threshold_uncertainty_score":0.23423453},"labels":[],"label_agreement":null},{"id":"W2916508691","doi":"10.1038/s41396-019-0377-0","title":"Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Paleontology and Stratigraphy of Fossils","field":"Earth and Planetary Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Precursory Research for Embryonic Science and Technology; Core Research for Evolutional Science and Technology; Japan Science and Technology Agency; Agence Nationale de la Recherche; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Centers for Disease Control and Prevention; National Natural Science Foundation of China","keywords":"Biology; Diversification (marketing strategy); Algae; Earth (classical element); Evolutionary biology; Ecology","score_opus":0.009405424141603289,"score_gpt":0.1867434083879109,"score_spread":0.17733798424630762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916508691","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97840315,0.0012322362,0.000029586752,0.011965524,0.00039245264,0.00019929335,0.000027392698,0.0000069591756,0.0077433977],"genre_scores_gemma":[0.999296,0.00014245576,0.000015844349,0.00028812655,0.00006212398,5.4607267e-7,0.0000014419825,0.0000010881578,0.00019238777],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988045,0.00045257475,0.00020619074,0.00010765774,0.0002546546,0.00017438998],"domain_scores_gemma":[0.9982842,0.0011463875,0.00025707154,0.00023075887,0.000042999905,0.000038543083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075030007,0.00010749714,0.00012935772,0.000027083133,0.00096437306,0.00010713531,0.00048265644,0.000044036307,0.00028350292],"category_scores_gemma":[0.000065384476,0.000039069197,0.00010800797,0.00016513246,0.0004913026,0.00018393442,0.0000069547405,0.0005263013,0.000023564882],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013617367,0.00007230332,0.8778631,0.000018671952,0.00079503097,0.0000037713924,0.014762482,0.0007469632,0.006079375,0.005222027,0.003611186,0.08946333],"study_design_scores_gemma":[0.0004166443,0.000090124326,0.99380827,0.00003029238,0.000036494574,0.00004296367,0.00120171,0.0014395093,0.0008391831,0.0018719122,0.00016300479,0.000059862214],"about_ca_topic_score_codex":0.0005560286,"about_ca_topic_score_gemma":0.0003024915,"teacher_disagreement_score":0.115945175,"about_ca_system_score_codex":0.0000019824272,"about_ca_system_score_gemma":0.000027596689,"threshold_uncertainty_score":0.74172753},"labels":[],"label_agreement":null},{"id":"W2917585407","doi":"10.1038/s41396-019-0376-1","title":"Molecular evidence for novel mercury methylating microorganisms in sulfate-impacted lakes","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"College of Science and Engineering, University of Minnesota; University of Minnesota Duluth; Genomics Center, University of Minnesota; University of Minnesota","keywords":"Biology; Deltaproteobacteria; Euryarchaeota; Metagenomics; Methylmercury; Methanogenesis; Bioaccumulation; Library; Mercury (programming language); Sulfate; Verrucomicrobia; Pyrosequencing; Ecology; Archaea; 16S ribosomal RNA; Firmicutes; Gammaproteobacteria; Gene; Genetics; Chemistry; Methane","score_opus":0.0453786232103519,"score_gpt":0.3138038958238258,"score_spread":0.2684252726134739,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917585407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99236244,0.00029826298,0.0035348444,0.0025749533,0.00019188348,0.00026780518,0.0000038727976,0.000010944421,0.00075501733],"genre_scores_gemma":[0.997392,0.000055489687,0.0015806849,0.00051603955,0.000052956446,0.0000050230165,6.6375105e-7,0.000013638102,0.00038350731],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989437,0.000069640206,0.00027558702,0.00013323009,0.00026969693,0.00030815633],"domain_scores_gemma":[0.99926734,0.00031241582,0.00016624079,0.0001576955,0.000019178262,0.00007711464],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011087258,0.00012214493,0.00016583272,0.00003698184,0.00018155342,0.000068672845,0.00027040817,0.000040232724,0.0009488654],"category_scores_gemma":[0.0003312158,0.00007845355,0.00007765237,0.00021003709,0.000076019605,0.00033934845,0.00009122523,0.00023618339,0.00013273787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022228149,0.000018395445,0.015704006,0.000004428711,0.000018917268,0.0000016071536,0.0018262144,0.0013205573,0.9790042,0.00003705677,0.00058449345,0.0014578828],"study_design_scores_gemma":[0.0038734186,0.0005172204,0.4448636,0.0005147021,0.00015966549,0.00043805322,0.0057746544,0.0042926637,0.5253012,0.006069888,0.0072452454,0.0009496905],"about_ca_topic_score_codex":0.000062336556,"about_ca_topic_score_gemma":0.00003194364,"teacher_disagreement_score":0.45370302,"about_ca_system_score_codex":0.000116555886,"about_ca_system_score_gemma":0.000024280054,"threshold_uncertainty_score":0.9999644},"labels":[],"label_agreement":null},{"id":"W2920147189","doi":"10.1038/s41396-019-0382-3","title":"Fluid geochemistry, local hydrology, and metabolic activity define methanogen community size and composition in deep-sea hydrothermal vents","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Division of Earth Sciences; Division of Ocean Sciences; Natural Sciences and Engineering Research Council of Canada; National Oceanic and Atmospheric Administration; Directorate for Geosciences; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; U.S. Department of Commerce; Fulbright New Zealand; Schmidt Ocean Institute; Center for Dark Energy Biosphere Investigations; National Science Foundation; University of Washington; Gordon and Betty Moore Foundation; National Aeronautics and Space Administration","keywords":"Hydrothermal vent; Methanogen; Biology; Seamount; Hyperthermophile; Hydrothermal circulation; Oceanography; Earth science; Geology; Ecology; Archaea; Methane; Paleontology","score_opus":0.007799599613339066,"score_gpt":0.2175320879799693,"score_spread":0.20973248836663025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2920147189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965628,0.00078843796,0.000117858785,0.00054786395,0.000060899823,0.00013257802,0.0000030300766,0.0000066920634,0.0017798734],"genre_scores_gemma":[0.9992527,0.0003272172,0.0001109226,0.00019635519,0.000026827604,0.0000026242644,0.0000017237961,0.0000104726805,0.000071203045],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987051,0.00056238886,0.00017564985,0.00012836329,0.00017715307,0.0002513275],"domain_scores_gemma":[0.9993981,0.0001816172,0.00011036158,0.00019343627,0.0000043089717,0.000112164125],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011345749,0.00013599232,0.0002142418,0.000020761336,0.00025038683,0.000031756124,0.0002076009,0.00009739551,0.0009543802],"category_scores_gemma":[0.000013046446,0.00009201993,0.000036916026,0.000100254445,0.00027885512,0.00013781578,0.00024556118,0.0008264489,0.000038528673],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029923956,0.00028213157,0.08311301,0.000020187039,0.00011536641,0.000016397657,0.0018817238,0.007898823,0.89231515,0.000025377492,0.000042114876,0.013990486],"study_design_scores_gemma":[0.0038190894,0.000349957,0.811674,0.000056954137,0.0001630396,0.0017032326,0.0003160563,0.056071825,0.117586225,0.00696047,0.0008057697,0.0004933913],"about_ca_topic_score_codex":0.0004992493,"about_ca_topic_score_gemma":0.00005253296,"teacher_disagreement_score":0.7747289,"about_ca_system_score_codex":0.000052933814,"about_ca_system_score_gemma":0.0000070999035,"threshold_uncertainty_score":0.9999589},"labels":[],"label_agreement":null},{"id":"W2921236349","doi":"10.1038/s41396-019-0397-9","title":"Active and diverse viruses persist in the deep sub-seafloor sediments over thousands of years","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Fisheries and Oceans Canada","funders":"China Ocean Mineral Resources Research and Development Association; National Natural Science Foundation of China; Danmarks Grundforskningsfond; China Postdoctoral Science Foundation; National Research Foundation","keywords":"Seafloor spreading; Biology; Biosphere; Biogeochemical cycle; Marine bacteriophage; Ecology; Extreme environment; Phototroph; Oceanography; Geology; Paleontology; Bacteria","score_opus":0.009541678051504023,"score_gpt":0.24105619909668552,"score_spread":0.2315145210451815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2921236349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99771094,0.000020178053,0.000004830106,0.00019138123,0.00013390348,0.000072588104,0.00000544479,0.0000014219148,0.0018592839],"genre_scores_gemma":[0.99933106,0.00006508255,0.00002185762,0.00037893569,0.000030166018,6.6159373e-7,2.3465591e-7,0.0000037408315,0.00016823596],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99958414,0.000056688572,0.000087428285,0.00006148253,0.00011022598,0.00010005046],"domain_scores_gemma":[0.9997756,0.00003880224,0.00007242442,0.000087446926,0.0000034370446,0.000022319566],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015387329,0.00004916029,0.000062668165,0.000016402244,0.000079933125,0.00003504886,0.0001583718,0.000019539151,0.0019578664],"category_scores_gemma":[0.000004792624,0.000027438546,0.000039331877,0.000060547867,0.00009232766,0.00020734005,0.000081404345,0.00018474374,0.000085712294],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001740735,0.0001831721,0.06336512,0.0000042432753,0.0000661586,0.000016709355,0.017192375,0.00023431989,0.9018065,0.000023433098,0.0030657032,0.013868206],"study_design_scores_gemma":[0.00038713185,0.00006314808,0.98828506,0.000013584729,0.000022521557,0.00009095847,0.0032069292,0.000043614553,0.003803988,0.000056414046,0.0039748875,0.00005175701],"about_ca_topic_score_codex":0.00024633782,"about_ca_topic_score_gemma":0.00012809887,"teacher_disagreement_score":0.92491996,"about_ca_system_score_codex":0.000044371733,"about_ca_system_score_gemma":0.000004300179,"threshold_uncertainty_score":0.9989545},"labels":[],"label_agreement":null},{"id":"W2929098320","doi":"10.1038/s41396-019-0406-z","title":"Single cell fluorescence imaging of glycan uptake by intestinal bacteria","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Deutsche Forschungsgemeinschaft; Newcastle University; Max-Planck-Gesellschaft; National Science Foundation","keywords":"Biology; Glycan; Bacteria; Bacteroides thetaiotaomicron; Bacteroides; Biochemistry; Microbiology; Yeast; Microbiome; Fluorescence microscope; Fluorescence; Genetics","score_opus":0.006646439971786837,"score_gpt":0.22457711651458748,"score_spread":0.21793067654280063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2929098320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974929,0.0004893886,0.00019526461,0.00067538454,0.00023415951,0.00006106879,0.000008458171,0.000002665318,0.00084069214],"genre_scores_gemma":[0.9978383,0.00007091166,0.00083143817,0.00025202948,0.00016071973,3.4537544e-7,0.000010336173,0.000011898307,0.00082399807],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993756,0.00004857738,0.00020211533,0.00009425773,0.000077069235,0.00020238374],"domain_scores_gemma":[0.9995116,0.000007680662,0.00016356856,0.00018711876,0.000067775174,0.00006223353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023594974,0.00008587451,0.00009829485,0.000017313614,0.00007036891,0.00003370336,0.00024783766,0.000034642242,0.00013528168],"category_scores_gemma":[0.000014106511,0.00006020018,0.000058205755,0.000036271736,0.0000547444,0.0000038098372,0.000063232794,0.00016386167,0.000020217996],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036772628,0.00003833838,0.002934788,0.000012228336,0.000005808729,7.205749e-7,0.00007672688,0.0000018170452,0.98678195,0.0000056364083,0.008909615,0.0011955663],"study_design_scores_gemma":[0.0005781213,0.00035382982,0.010643662,0.000054037766,0.000014990828,0.0004566937,0.0002728443,0.000032755088,0.94627774,0.000055574335,0.0411278,0.00013193226],"about_ca_topic_score_codex":0.000014316225,"about_ca_topic_score_gemma":0.0000018953007,"teacher_disagreement_score":0.040504225,"about_ca_system_score_codex":0.0000142609,"about_ca_system_score_gemma":0.00009240437,"threshold_uncertainty_score":0.24548921},"labels":[],"label_agreement":null},{"id":"W2929112394","doi":"10.1038/s41396-019-0407-y","title":"Structural equation modeling of a winnowed soil microbiome identifies how invasive plants re-structure microbial networks","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canada First Research Excellence Fund; University of Saskatchewan","keywords":"Biology; Ecology; Microbial ecology; Ecological network; Network analysis; Microbiome; Ecosystem; Metagenomics; Identification (biology); Inference; Microbial population biology; Biochemical engineering; Computer science; Artificial intelligence; Bioinformatics","score_opus":0.01598948143329743,"score_gpt":0.23439278243688075,"score_spread":0.21840330100358332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2929112394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964748,0.00057979615,0.0012962412,0.0005742728,0.00082422525,0.00017367817,0.00004775303,0.0000044555336,0.000024771512],"genre_scores_gemma":[0.9982171,0.00018007548,0.00019497353,0.00027703855,0.00061790587,5.833851e-7,0.00013114736,0.000021114713,0.00036008048],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895316,0.00011771284,0.00030991013,0.00019571894,0.000117101954,0.000306406],"domain_scores_gemma":[0.999169,0.000016090866,0.00033033197,0.00026941363,0.00015660009,0.000058584174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026717698,0.00016982573,0.00021064079,0.00006297507,0.00019248186,0.00009154731,0.00033714433,0.00019620625,0.000057196037],"category_scores_gemma":[0.000017684511,0.000120026365,0.00011856659,0.00007290349,0.00006118118,0.000014834222,0.000106191175,0.00032852322,0.000003978038],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012249814,0.0000056646413,0.0003617768,0.000026533993,0.0000708121,0.0000011733549,0.00042030343,0.027366232,0.9701153,0.000005135784,0.0014253941,0.00007914878],"study_design_scores_gemma":[0.0037954133,0.00054410275,0.004194638,0.0003386291,0.00013258723,0.0016270826,0.003292712,0.046197206,0.93777305,0.0007363149,0.00060089363,0.00076734676],"about_ca_topic_score_codex":0.000028876848,"about_ca_topic_score_gemma":0.00013809095,"teacher_disagreement_score":0.032342255,"about_ca_system_score_codex":0.00003460277,"about_ca_system_score_gemma":0.00024108146,"threshold_uncertainty_score":0.48945332},"labels":[],"label_agreement":null},{"id":"W2944872651","doi":"10.1038/s41396-019-0441-9","title":"Molecular mechanisms of temperature acclimation and adaptation in marine diatoms","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Algal biology and biofuel production","field":"Energy","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Allison University; Dalhousie University","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Génome Québec; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; McGill University","keywords":"Biology; Acclimatization; Adaptation (eye); Ecology; Evolutionary biology; Neuroscience","score_opus":0.007473653349787101,"score_gpt":0.208350885388418,"score_spread":0.2008772320386309,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2944872651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99789006,0.00009359237,0.00018763324,0.0010304905,0.00018785118,0.000059852875,4.7060524e-7,0.0000048324328,0.00054520456],"genre_scores_gemma":[0.9992241,0.00007138482,0.00045212888,0.000103000595,0.000054272492,8.6415895e-7,0.0000052053174,0.000003887751,0.000085141255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995549,0.00009123618,0.00014777882,0.00006247621,0.00007369835,0.00006994724],"domain_scores_gemma":[0.9997623,0.00001577861,0.0001037205,0.00007082788,0.000034730238,0.000012623019],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037230153,0.000048559734,0.0000749569,0.000043650867,0.000035804333,0.000010929219,0.000054705528,0.000070798815,0.00010977966],"category_scores_gemma":[0.000023674469,0.000029430397,0.000019415178,0.00007382738,0.00001821746,0.00009247384,0.000022154876,0.00019235568,0.000010214249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011127803,0.000032532153,0.0031536685,0.000017260048,0.000029587762,0.0000028857805,0.0005407299,0.002779391,0.9426996,0.03879869,0.000017475282,0.0118168695],"study_design_scores_gemma":[0.0018877403,0.00052524975,0.1390602,0.00007776712,0.000059544345,0.00048374292,0.0017554055,0.0053875768,0.44958326,0.40039393,0.00050905766,0.00027650915],"about_ca_topic_score_codex":0.000032930995,"about_ca_topic_score_gemma":0.000022490321,"teacher_disagreement_score":0.49311638,"about_ca_system_score_codex":0.000013347286,"about_ca_system_score_gemma":0.000011381039,"threshold_uncertainty_score":0.12020103},"labels":[],"label_agreement":null},{"id":"W2946730248","doi":"10.1038/s41396-019-0436-6","title":"Microbial succession on decomposing root litter in a drought-prone Scots pine forest","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Génome Québec; Eidgenössische Technische Hochschule Zürich; McGill University; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Decomposer; Biology; Ecological succession; Acidobacteria; Scots pine; Litter; Nutrient cycle; Carbon cycle; Plant litter; Agronomy; Botany; Soil water; Ecology; Ecosystem; Actinobacteria; Bacteria","score_opus":0.008382539216395432,"score_gpt":0.2364142539820094,"score_spread":0.22803171476561399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2946730248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930282,0.00001600298,0.0000269496,0.0022615225,0.00039621838,0.00013892067,9.479141e-7,0.000006647209,0.00412455],"genre_scores_gemma":[0.99808615,0.000010158428,0.00011152325,0.0010330303,0.00011852186,0.0000011334744,0.0000037411146,0.000009437022,0.0006263146],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99890786,0.00037365337,0.00021558996,0.0001235052,0.00008989919,0.0002894997],"domain_scores_gemma":[0.99948466,0.00011289454,0.00011319272,0.00023824614,0.0000046129107,0.000046411893],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00055251713,0.000111701804,0.00015575405,0.000039990784,0.00029462384,0.000032386793,0.0004795119,0.00008718134,0.0066312524],"category_scores_gemma":[0.0000124921535,0.0000727461,0.000053089585,0.000114878945,0.00011440897,0.0001491202,0.00025311086,0.00080725737,0.0014373207],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051464443,0.0003598146,0.2910832,0.000008804845,0.00001936751,0.00001615385,0.001396871,0.014949086,0.678323,0.0000817211,0.011254984,0.0019923986],"study_design_scores_gemma":[0.0012753318,0.00041416867,0.9801929,0.00012026499,0.00000946121,0.0002551547,0.00004676964,0.0005423762,0.0046642884,0.0031796882,0.009092269,0.00020729871],"about_ca_topic_score_codex":0.00019485615,"about_ca_topic_score_gemma":0.003513548,"teacher_disagreement_score":0.68910974,"about_ca_system_score_codex":0.0001308925,"about_ca_system_score_gemma":0.000013674447,"threshold_uncertainty_score":0.9993402},"labels":[],"label_agreement":null},{"id":"W2950135557","doi":"10.1038/ismej.2016.68","title":"Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter","year":2016,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":170,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Cornell Atkinson Center for Sustainability, Cornell University; Towards Sustainability Foundation; U.S. Department of Agriculture; National Science Foundation; David R. Atkinson Center for a Sustainable Future , Cornell University; National Institute of Food and Agriculture","keywords":"Soil organic matter; Organic matter; Soil carbon; Soil water; Environmental chemistry; Microbial population biology; Stover; Environmental science; Mineralization (soil science); Biology; Agronomy; Ecology; Chemistry; Field experiment; Bacteria","score_opus":0.006161306913681706,"score_gpt":0.19813019312591174,"score_spread":0.19196888621223002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950135557","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99893403,0.000021218028,0.00012992937,0.00070725195,0.000056483885,0.000057034227,0.000011570203,0.0000025612628,0.00007993711],"genre_scores_gemma":[0.9997321,0.00006194272,0.00003530445,0.00011420139,0.000013286525,4.98732e-7,0.000014934129,0.0000069332987,0.000020826095],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99893737,0.0006202101,0.00022665855,0.000053999993,0.000052206917,0.00010958234],"domain_scores_gemma":[0.99952316,0.00014050976,0.00016865184,0.00013404641,0.00000985599,0.000023747925],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004738678,0.00007270359,0.00014785635,0.000037001024,0.00018088936,0.000006223127,0.0001536079,0.000073738905,0.0010900274],"category_scores_gemma":[0.000015716807,0.00004983186,0.000027582457,0.00008793448,0.00024531377,0.00009852946,0.00017205083,0.00025462967,0.0000040436253],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003376021,0.000052642084,0.040249925,0.0000067322317,0.000014557548,4.9218477e-7,0.0007699289,0.000039424416,0.9585403,0.000010507175,0.00018354588,0.00009816258],"study_design_scores_gemma":[0.0030547748,0.00042171963,0.8428385,0.00027448364,0.00014120537,0.00043316052,0.00079312717,0.0011074719,0.13817793,0.012425929,0.0000148350155,0.00031684103],"about_ca_topic_score_codex":0.00063285854,"about_ca_topic_score_gemma":0.013752088,"teacher_disagreement_score":0.8203624,"about_ca_system_score_codex":0.0000840394,"about_ca_system_score_gemma":0.000010570136,"threshold_uncertainty_score":0.9998231},"labels":[],"label_agreement":null},{"id":"W2950413189","doi":"10.1038/s41396-018-0279-6","title":"Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":397,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Genome Canada","keywords":"Decomposer; Metagenomics; Biology; Stable-isotope probing; Lignin; Microbial population biology; Lignocellulosic biomass; Microbial ecology; Cellulose; Botany; Bacteria; Ecology; Microorganism; Biochemistry; Gene","score_opus":0.018673013632951086,"score_gpt":0.24295274989793098,"score_spread":0.22427973626497988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950413189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961493,0.00008472778,0.0005371808,0.0026712457,0.00007358791,0.00020790486,0.00014558694,0.0000060100074,0.0001244558],"genre_scores_gemma":[0.9990848,0.00019543433,0.00029872378,0.00007976127,0.00018993136,0.0000076242854,0.000052702155,6.1146363e-7,0.00009042055],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995009,0.00008354174,0.00013531845,0.00009238931,0.000061851104,0.00012605471],"domain_scores_gemma":[0.9993616,0.00037762235,0.000075950134,0.000021439235,0.000102972015,0.000060420276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000356258,0.00006208668,0.000079640224,0.000018465353,0.00036081905,0.00016096116,0.000062060906,0.000024348119,0.0001876514],"category_scores_gemma":[0.000087541855,0.000020438883,0.000011184931,0.00012682677,0.000014996668,0.00019035833,0.00001761231,0.00010034596,0.000027681297],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033865919,0.00003902887,0.01176198,0.0000023559196,0.000023441282,0.0000021651324,0.0011581638,0.000034458455,0.9785892,0.0030827026,0.0010864255,0.0038814605],"study_design_scores_gemma":[0.0017572888,0.008614169,0.70461684,0.0008918759,0.00039270145,0.002401718,0.014582574,0.013187908,0.14017473,0.0234319,0.08843267,0.0015156335],"about_ca_topic_score_codex":0.0004381002,"about_ca_topic_score_gemma":0.0023446956,"teacher_disagreement_score":0.83841443,"about_ca_system_score_codex":0.000022071205,"about_ca_system_score_gemma":0.000012772691,"threshold_uncertainty_score":0.27751648},"labels":[],"label_agreement":null},{"id":"W2951992010","doi":"10.1038/ismej.2017.58","title":"Characterising and predicting cyanobacterial blooms in an 8-year amplicon sequencing time course","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Université du Québec à Montréal; National Research Council Canada; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; European Commission; Australian Government","keywords":"Bloom; Algal bloom; Eutrophication; Microcystis; Cyanobacteria; Amplicon sequencing; Biology; Operational taxonomic unit; Ecology; Microcystin; Microcystis aeruginosa; Phytoplankton; Bacteria; Nutrient","score_opus":0.012987046903765563,"score_gpt":0.24501820796867263,"score_spread":0.23203116106490707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951992010","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984447,0.000006468861,0.000053891123,0.00027271215,0.00024822942,0.00009437236,0.000004994847,0.0000084900585,0.00086619385],"genre_scores_gemma":[0.99925244,0.000010262799,0.00015305042,0.000047512764,0.00039150706,0.0000012056448,0.0000011685403,0.000011183628,0.0001316652],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991745,0.00008515611,0.00022607442,0.00012833971,0.00016733292,0.00021859467],"domain_scores_gemma":[0.99928385,0.000030148378,0.00031219493,0.0002719251,0.0000049368723,0.00009697263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009886291,0.000095372,0.00013875902,0.000012644883,0.00068780803,0.00042242446,0.00031654787,0.00004890913,0.0003271847],"category_scores_gemma":[0.000029034945,0.000066834735,0.000022530503,0.000018799818,0.00010613259,0.0005731605,0.00012910571,0.00026138796,0.0000545561],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021839813,0.00002128742,0.9362889,0.000005431772,0.000009855756,0.000024487355,0.0018394778,0.00019964334,0.058435358,0.000028443268,0.000018371937,0.0031069284],"study_design_scores_gemma":[0.0004577435,0.00006328859,0.96449834,0.00011054169,0.000016823868,0.0003906996,0.0002351358,0.033317603,0.00018798499,0.00045435113,0.00013733371,0.00013013667],"about_ca_topic_score_codex":0.00020846835,"about_ca_topic_score_gemma":0.0003955283,"teacher_disagreement_score":0.058247373,"about_ca_system_score_codex":0.00010218705,"about_ca_system_score_gemma":0.000018335777,"threshold_uncertainty_score":0.5290133},"labels":[],"label_agreement":null},{"id":"W2952919847","doi":"10.1038/ismej.2017.194","title":"Immune loss as a driver of coexistence during host-phage coevolution","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Institute of General Medical Sciences","keywords":"Coevolution; Biology; Arms race; Host (biology); Immune system; Immunity; Extinction (optical mineralogy); CRISPR; Evolutionary biology; Antagonistic Coevolution; Pathogen; Genetics; Gene","score_opus":0.005669552136118194,"score_gpt":0.24924269578694017,"score_spread":0.24357314365082197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2952919847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99456286,0.00062008423,0.0027754596,0.00033854,0.00023663156,0.00005833867,0.0000051341726,0.000004271585,0.0013986952],"genre_scores_gemma":[0.99630755,0.0003410439,0.00035937782,0.00011239291,0.00040362315,0.0000010376178,0.00000404553,0.000009723004,0.0024612264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929315,0.00006603487,0.0002135869,0.000103745,0.00015162787,0.00017188382],"domain_scores_gemma":[0.9993484,0.000005184196,0.0001646936,0.00023773838,0.0001894905,0.000054477798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020838491,0.00008387147,0.00008970441,0.000025790261,0.0002090072,0.000015094185,0.00024736897,0.00006990369,0.000093669776],"category_scores_gemma":[0.00005452797,0.000061524865,0.00008744817,0.00006544474,0.00030501306,0.0000037251987,0.000097249984,0.00012118475,0.000036871883],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010219776,0.000034429908,0.0009050851,0.000006240935,0.000049032504,0.0000035813164,0.00024962277,0.00008291533,0.99769115,0.00017106665,0.00055534067,0.0001493161],"study_design_scores_gemma":[0.002473364,0.0014012033,0.36852568,0.00009497384,0.00009376214,0.0030240314,0.0007638781,0.0018092204,0.6085568,0.0011863345,0.011652015,0.00041875168],"about_ca_topic_score_codex":0.000012943854,"about_ca_topic_score_gemma":0.000014769846,"teacher_disagreement_score":0.38913438,"about_ca_system_score_codex":0.000017953571,"about_ca_system_score_gemma":0.00006882402,"threshold_uncertainty_score":0.25089112},"labels":[],"label_agreement":null},{"id":"W2953201188","doi":"10.1038/s41396-019-0372-5","title":"Convergent gain and loss of genomic islands drive lifestyle changes in plant-associated <i>Pseudomonas</i>","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Universities Space Research Association; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Western Canada Research Grid; Compute Canada; Life Sciences Research Foundation","keywords":"Biology; Quorum sensing; Commensalism; Host (biology); Pseudomonas fluorescens; Pathogenic bacteria; Genetics; Arabidopsis; Gene; Convergent evolution; Evolutionary biology; Bacteria; Phylogenetics; Mutant; Virulence","score_opus":0.01186579623081602,"score_gpt":0.20477366346220405,"score_spread":0.19290786723138803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953201188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976293,0.00014217396,2.8911205e-7,0.0016180722,0.0001838102,0.0000718187,0.000090047135,0.000004510997,0.00025997453],"genre_scores_gemma":[0.998526,0.00079176086,0.0000031870984,0.00023372163,0.000072639246,8.974114e-7,0.00001630038,6.1224716e-7,0.0003549013],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993931,0.00013002931,0.0001661156,0.00007008834,0.000083505845,0.00015715565],"domain_scores_gemma":[0.9995479,0.00019373049,0.00015890619,0.00003214238,0.00003081345,0.00003647957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040525975,0.00007365104,0.00014632377,0.000015333851,0.00010566131,0.000031839536,0.0001678869,0.000047884296,0.00044234906],"category_scores_gemma":[0.000015679449,0.000024323524,0.000038991857,0.00007370031,0.00003507554,0.00005893981,0.000055670134,0.00024993898,0.00002117706],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005842968,0.00008722528,0.17396484,0.000002912618,0.000034313154,0.000006924569,0.0007002367,0.0000095795185,0.8225259,0.0000115152225,0.0015133589,0.0010847151],"study_design_scores_gemma":[0.00054416136,0.00038502895,0.9763883,0.00010361257,0.000016552549,0.00046342643,0.0017505898,0.00022725681,0.011687444,0.00024059774,0.008042867,0.0001501632],"about_ca_topic_score_codex":0.00024822186,"about_ca_topic_score_gemma":0.0013873932,"teacher_disagreement_score":0.8108385,"about_ca_system_score_codex":0.000026293443,"about_ca_system_score_gemma":0.0000086255495,"threshold_uncertainty_score":0.4843412},"labels":[],"label_agreement":null},{"id":"W2961235523","doi":"10.1038/s41396-019-0469-x","title":"Microbe-driven chemical ecology: past, present and future","year":2019,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Japan Society for the Promotion of Science; Helmholtz-Zentrum für Umweltforschung; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Koninklijke Nederlandse Akademie van Wetenschappen; Nederlands Instituut voor Ecologie; Deutsche Forschungsgemeinschaft; Friedrich-Schiller-Universität Jena","keywords":"Ecology; Abiotic component; Microbial ecology; Natural (archaeology); Biology; Ecosystem","score_opus":0.026397562955485114,"score_gpt":0.2829624679861104,"score_spread":0.2565649050306253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2961235523","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010537105,0.99278295,0.0000022325344,0.0027470852,0.00087644067,0.00043434856,0.000017575107,0.000012232089,0.0020734458],"genre_scores_gemma":[0.00003290971,0.99618804,0.00010404887,0.00038782382,0.002321224,0.0000066430975,0.000021588414,0.000022140444,0.000915557],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99822176,0.0008129333,0.00033963492,0.00020202219,0.00008238067,0.00034128688],"domain_scores_gemma":[0.99889565,0.00027870163,0.00033692524,0.00038765554,0.000006236697,0.00009482354],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004005858,0.00026968386,0.0008022336,0.000029989542,0.0003456242,0.000033545602,0.0009310169,0.00045701288,0.0051605646],"category_scores_gemma":[0.0000050858157,0.00015533358,0.00024418396,0.00008711913,0.00040558726,0.000058631984,0.0009613506,0.002005057,0.0009499826],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016365237,0.000103259204,0.00008820715,0.0005985523,0.000246873,0.000017501843,0.00034581596,0.000011826173,0.00024854633,0.000029271343,0.4514417,0.54685205],"study_design_scores_gemma":[0.00011791826,0.00005630667,0.00014122175,0.00015552127,0.00028108901,0.0015898654,0.000016908794,0.0000026500663,0.0000017251549,0.00024129296,0.9972261,0.00016939802],"about_ca_topic_score_codex":0.000008388059,"about_ca_topic_score_gemma":0.000015215346,"teacher_disagreement_score":0.54668266,"about_ca_system_score_codex":0.0001294389,"about_ca_system_score_gemma":0.000049036396,"threshold_uncertainty_score":0.9998279},"labels":[],"label_agreement":null},{"id":"W2965214956","doi":"10.1038/s41396-019-0481-1","title":"Coherence of <i>Microcystis</i> species revealed through population genomics","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"National Research Council Canada; Université de Montréal","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; European Commission; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Genome Canada","keywords":"Biology; Monophyly; Microcystis; Clade; Evolutionary biology; Population genomics; Population; Microcystin; Microcystis aeruginosa; Paraphyly; Phylogenetics; Genome; Genomics; Genetics; Ecology; Zoology; Gene; Cyanobacteria","score_opus":0.008034898699021494,"score_gpt":0.20071898700629245,"score_spread":0.19268408830727096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2965214956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98472977,0.000049669103,0.0009858812,0.00017742476,0.00029827488,0.0001458806,0.0000084571,0.000005216716,0.013599443],"genre_scores_gemma":[0.99580306,0.000035888268,0.0012778147,0.0001119221,0.00008617655,7.1858614e-7,0.0000023625635,0.00000774454,0.0026742923],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99919,0.00006034216,0.00029960994,0.00008637028,0.0002240279,0.00013966001],"domain_scores_gemma":[0.9993843,0.00005641043,0.00031968972,0.00020064655,0.00000874917,0.000030192454],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00037910097,0.00007909946,0.00015189731,0.0000080743275,0.00010356837,0.000025697385,0.00027400782,0.00003652641,0.00195709],"category_scores_gemma":[0.000010406032,0.000051150277,0.00005468785,0.00008047454,0.000049323917,0.00014896491,0.000069966154,0.00016294573,0.00032234596],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046940368,0.000051496325,0.8826017,0.00003622231,0.000040188115,0.00000524654,0.0023878794,0.019293567,0.08383456,0.0021050805,0.008020564,0.0015765588],"study_design_scores_gemma":[0.0009505545,0.00021156292,0.93441164,0.00015255089,0.000056085926,0.0007885438,0.00075898465,0.0067344247,0.0031383478,0.020906955,0.03150631,0.00038404702],"about_ca_topic_score_codex":0.00022929329,"about_ca_topic_score_gemma":0.00010423557,"teacher_disagreement_score":0.08069621,"about_ca_system_score_codex":0.00011393289,"about_ca_system_score_gemma":0.000011085646,"threshold_uncertainty_score":0.99895525},"labels":[],"label_agreement":null},{"id":"W2966137778","doi":"10.1038/s41396-019-0480-2","title":"Global change-driven use of onshore habitat impacts polar bear faecal microbiota","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"U.S. Geological Survey; Natural Environment Research Council; Research Councils UK","keywords":"Biology; Gut flora; Ecology; Arctic; Environmental change; Ursus maritimus; Abundance (ecology); Firmicutes; Biodiversity; Climate change; Habitat; Ecosystem; Microbial ecology; Phylum; Proteobacteria; Keystone species; Marine ecosystem; 16S ribosomal RNA","score_opus":0.024859295227733464,"score_gpt":0.2766726291332955,"score_spread":0.25181333390556204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966137778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99656993,0.0008782449,0.00005085576,0.0017090329,0.00033674767,0.00019881391,0.00015542115,0.0000041476364,0.000096827156],"genre_scores_gemma":[0.99728024,0.0003934373,0.0005407646,0.0010880649,0.00040493323,7.8773e-7,0.00003839089,0.000016593813,0.00023680781],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901056,0.00011556124,0.00024814697,0.00015754286,0.00011446369,0.00035373084],"domain_scores_gemma":[0.9992421,0.000011636878,0.00018225661,0.000327223,0.000096114934,0.00014062334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022550805,0.00014610315,0.00018655484,0.000029993816,0.000112479596,0.0000486842,0.0002941753,0.00015501001,0.00007127282],"category_scores_gemma":[0.000026814068,0.000099282974,0.00014263293,0.00008297845,0.00008323049,0.000010657135,0.00012670146,0.00021385637,0.00004749126],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009671736,0.000054150754,0.08998319,0.00002226313,0.00007556078,0.0000037058685,0.0001342096,0.00001424887,0.8925935,0.000041003885,0.016640568,0.00034086092],"study_design_scores_gemma":[0.0017634511,0.0013539476,0.83632267,0.00015994886,0.00009781264,0.0020246247,0.00028070432,0.00004238626,0.033226438,0.00008739119,0.12421084,0.00042977493],"about_ca_topic_score_codex":0.00012291853,"about_ca_topic_score_gemma":0.00015112877,"teacher_disagreement_score":0.8593671,"about_ca_system_score_codex":0.000042121374,"about_ca_system_score_gemma":0.00016532003,"threshold_uncertainty_score":0.4048642},"labels":[],"label_agreement":null},{"id":"W2971436011","doi":"10.1038/s41396-019-0498-5","title":"Drivers of human gut microbial community assembly: coadaptation, determinism and stochasticity","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; McMaster University; U.S. Department of Health and Human Services","keywords":"Biology; Determinism; Microbial population biology; Ecology; Microbial ecology; Evolutionary biology; Computational biology; Genetics; Bacteria; Epistemology","score_opus":0.014776034218930789,"score_gpt":0.27475345110928967,"score_spread":0.25997741689035886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971436011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860173,0.000057023346,0.0006802909,0.00020172904,0.00011642771,0.00009646625,0.000008945702,0.0000020931789,0.000235269],"genre_scores_gemma":[0.9991258,0.000044608056,0.00018454297,0.00025090258,0.000092289425,3.9948733e-7,0.00000963371,0.000008010752,0.0002838174],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999366,0.00018069813,0.0001845068,0.000068795394,0.000063685344,0.00013631552],"domain_scores_gemma":[0.9994895,0.000019747722,0.00016757027,0.0001872751,0.000082815575,0.000053094456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043687093,0.00007833061,0.00012047808,0.000024708825,0.00030965442,0.000021437963,0.00018997431,0.00007178954,0.000021497108],"category_scores_gemma":[0.000016777683,0.000058683334,0.00004769852,0.00002398698,0.00010178807,0.0000038341927,0.000090461464,0.00028680274,0.0000040044106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022047654,0.000027886124,0.0016521611,0.000013801243,0.0000237912,3.4682301e-7,0.00060708076,0.000019673837,0.99665594,0.00005129076,0.0007094104,0.00021654324],"study_design_scores_gemma":[0.0053311978,0.0036861685,0.50150454,0.0001784272,0.00017377111,0.0012036816,0.004469426,0.00017607794,0.4745836,0.0009375984,0.0071385573,0.0006169724],"about_ca_topic_score_codex":0.000063105195,"about_ca_topic_score_gemma":0.00007978304,"teacher_disagreement_score":0.5220724,"about_ca_system_score_codex":0.000010406984,"about_ca_system_score_gemma":0.00007751781,"threshold_uncertainty_score":0.2393037},"labels":[],"label_agreement":null},{"id":"W2972076716","doi":"10.1038/s41396-019-0502-0","title":"Metagenomic and chemical characterization of soil cobalamin production","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Cassava research and cyanide","field":"Agricultural and Biological Sciences","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Simons Foundation; Agencia Estatal de Investigación; National Science Foundation","keywords":"Biology; Metagenomics; Cobalamin; Computational biology; Biotechnology; Biochemistry","score_opus":0.011432567986789838,"score_gpt":0.1972539473581652,"score_spread":0.18582137937137536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2972076716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967514,0.00003158499,0.0000011222038,0.0029658214,0.0000734493,0.00006632859,0.0000031138316,0.0000035144526,0.00010361198],"genre_scores_gemma":[0.9989883,0.00012311505,0.0000042491306,0.000030424912,0.00023746118,6.444699e-7,0.000004536357,2.8764725e-7,0.0006110115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999593,0.00004381904,0.0000919955,0.000058856782,0.0001231539,0.00008915764],"domain_scores_gemma":[0.99981666,0.000024269979,0.00006611946,0.000021961405,0.00003680135,0.000034207595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031769584,0.00003446514,0.00006411195,0.0000043743366,0.000057442438,0.00003162617,0.0000831827,0.000019451269,0.0002526639],"category_scores_gemma":[0.000023411065,0.000009697112,0.000027344144,0.00006391403,0.00003173703,0.000074511394,0.000027483102,0.00009740594,0.000015367672],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018931523,0.000010625058,0.002088843,0.000001731922,0.000005760434,2.0955041e-7,0.000033050637,4.788463e-7,0.98248,0.000025503175,0.000042770946,0.015292082],"study_design_scores_gemma":[0.000103924045,0.0001171821,0.44570735,0.000012045594,0.00000954866,0.00015630134,0.00015179615,0.000079656966,0.5510066,0.0003312643,0.0022692464,0.000055061588],"about_ca_topic_score_codex":0.000013839812,"about_ca_topic_score_gemma":0.000008482548,"teacher_disagreement_score":0.4436185,"about_ca_system_score_codex":0.000009253627,"about_ca_system_score_gemma":0.0000056376575,"threshold_uncertainty_score":0.27664924},"labels":[],"label_agreement":null},{"id":"W2972767555","doi":"10.1038/s41396-019-0499-4","title":"Diversity and biogeography of SAR11 bacteria from the Arctic Ocean","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Concordia University","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; ArcticNet; Office of Science; Fisheries and Oceans Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Division of Ocean Sciences; Joint Genome Institute; U.S. Department of Energy","keywords":"Ecotype; Arctic; Biology; Ecology; Biogeography; Brackish water; Water mass; Clade; Salinity; Oceanography; Phylogenetics; Geology","score_opus":0.00839533989352497,"score_gpt":0.18869973608312623,"score_spread":0.18030439618960126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2972767555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99705654,0.0020963554,0.000010531632,0.00050592347,0.00018350146,0.000054253018,0.000019893305,4.1065297e-7,0.00007256065],"genre_scores_gemma":[0.99839896,0.0011078756,0.00006618454,0.00022258458,0.00016187657,1.3461776e-7,0.000001855283,0.000004062452,0.000036455538],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996284,0.000047352358,0.00008966364,0.000080347854,0.0000642506,0.000089933405],"domain_scores_gemma":[0.9996547,0.00002600618,0.000083432205,0.00016936378,0.000041188367,0.000025290827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017423758,0.00006346533,0.000079252684,0.00000916454,0.00042096086,0.000011353883,0.00020330699,0.000029956169,0.000022619339],"category_scores_gemma":[0.000010373881,0.000033625227,0.000068496825,0.000026427011,0.000094604125,5.279632e-7,0.000620854,0.000071366776,0.0000013547441],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042807387,0.000011282107,0.7638767,0.0000027014514,0.00020312745,2.8161443e-7,0.0007884863,0.000006842944,0.23425189,0.000021774575,0.00044176652,0.0003523465],"study_design_scores_gemma":[0.00032268246,0.00013036837,0.9840859,0.000008212839,0.000050821993,0.000019901854,0.0003672342,0.0000042302654,0.008776033,0.0012596821,0.004911443,0.00006346955],"about_ca_topic_score_codex":0.000105287014,"about_ca_topic_score_gemma":0.000011687344,"teacher_disagreement_score":0.22547586,"about_ca_system_score_codex":0.0000019764752,"about_ca_system_score_gemma":0.000010011857,"threshold_uncertainty_score":0.32377332},"labels":[],"label_agreement":null},{"id":"W2973135657","doi":"10.1038/s41396-019-0501-1","title":"Root-associated microorganisms reprogram plant life history along the growth–stress resistance tradeoff","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Waterloo; Universiteit Utrecht","keywords":"Biology; Plant evolution; Microorganism; Plant growth; Phenotype; Biotechnology; Bacteria; Genetics; Botany; Gene; Genome","score_opus":0.018386013096049827,"score_gpt":0.1922522080306634,"score_spread":0.17386619493461358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2973135657","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9869792,0.0012665455,0.0000012129358,0.0094387205,0.00081828365,0.00013992123,0.00006711442,0.000037394686,0.0012516256],"genre_scores_gemma":[0.9938051,0.00013811803,0.000009954817,0.00069948565,0.00029982536,0.0000029388484,0.000027591663,0.0000018701207,0.00501511],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987084,0.0003128493,0.00030111737,0.00014849579,0.00021913352,0.00030995518],"domain_scores_gemma":[0.9990557,0.0003534385,0.0003047872,0.000115524344,0.00008679384,0.0000837844],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00073726824,0.00013841604,0.00016608664,0.000010044533,0.00063437375,0.00015542374,0.000714787,0.000081320984,0.0010427007],"category_scores_gemma":[0.0001106527,0.000038225575,0.00014851727,0.00013540931,0.00008330917,0.00015878803,0.00006363643,0.00075516157,0.00011065576],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019145105,0.00038787565,0.020055065,0.000008236314,0.00021012664,0.00002914527,0.0013642265,0.0000080010595,0.7005127,0.00020763384,0.274041,0.0029845308],"study_design_scores_gemma":[0.00033469798,0.00021495903,0.55666447,0.00016929673,0.000056771438,0.0004954261,0.0017544666,0.000024220682,0.007178629,0.00035945297,0.4324394,0.00030821614],"about_ca_topic_score_codex":0.00062459544,"about_ca_topic_score_gemma":0.0027438418,"teacher_disagreement_score":0.69333404,"about_ca_system_score_codex":0.00016196571,"about_ca_system_score_gemma":0.00003685139,"threshold_uncertainty_score":0.9998705},"labels":[],"label_agreement":null},{"id":"W2975914829","doi":"10.1038/s41396-019-0508-7","title":"Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Vienna Science and Technology Fund; Max-Planck-Gesellschaft; Deutsche Forschungsgemeinschaft; Universität Bremen; European Commission; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Biology; Betaproteobacteria; Gammaproteobacteria; Autotroph; Carbon fixation; Candidatus; Carbon cycle; Gene; Ecology; Bacteria; Biochemistry; Genetics; 16S ribosomal RNA; Ecosystem; Actinobacteria","score_opus":0.0024584814725689577,"score_gpt":0.17832787061844946,"score_spread":0.1758693891458805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2975914829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998474,0.00005646608,0.000041026575,0.000437721,0.00020626419,0.00015474725,0.000016399306,0.000006603816,0.00060677185],"genre_scores_gemma":[0.9994959,0.000042917407,0.00012664712,0.00017372283,0.00004065655,0.0000013917535,0.0000043994933,0.000007998792,0.00010633304],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99906707,0.00029440387,0.00020794169,0.000105052524,0.0000978059,0.00022772698],"domain_scores_gemma":[0.9993395,0.00013832287,0.00017985851,0.0002723115,0.0000074976315,0.000062470346],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00049228495,0.00010538212,0.00017722195,0.000015516232,0.0002656908,0.000027622016,0.00040458166,0.00008899708,0.005344324],"category_scores_gemma":[0.000021735237,0.00007513034,0.000049854614,0.000068876725,0.00020993256,0.00018578483,0.00031242846,0.0003900345,0.00011415069],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000074988384,0.00009349776,0.04920022,0.000010873724,0.00003573608,0.0000013831836,0.0017870055,0.00003303255,0.93935835,0.000030314184,0.007995544,0.0013790615],"study_design_scores_gemma":[0.00097591785,0.0014616647,0.97911185,0.00014091139,0.000060884602,0.0005301349,0.0008793346,0.00020373813,0.008905136,0.005927777,0.0014496065,0.00035304457],"about_ca_topic_score_codex":0.0004776271,"about_ca_topic_score_gemma":0.0002756799,"teacher_disagreement_score":0.9304532,"about_ca_system_score_codex":0.00006880044,"about_ca_system_score_gemma":0.000009972166,"threshold_uncertainty_score":0.99556494},"labels":[],"label_agreement":null},{"id":"W2980537951","doi":"10.1038/s41396-019-0532-7","title":"Host determinants of among-species variation in microbiome composition in drosophilid flies","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Emil Aaltosen Säätiö; European Commission; Suomen Kulttuurirahasto; National Science Foundation","keywords":"Biology; Host (biology); Microbiome; Composition (language); Ecology; Zoology; Generalist and specialist species; Habitat; Bioinformatics","score_opus":0.01151182397698564,"score_gpt":0.2027645277388187,"score_spread":0.19125270376183306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980537951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990517,0.000029921215,9.116057e-8,0.0004777076,0.00021576042,0.000097862445,0.0000089971245,0.0000029489788,0.00011499688],"genre_scores_gemma":[0.9997185,0.000042767704,0.0000070739165,0.000058203525,0.0001254215,0.0000011307027,0.0000023694886,3.9347984e-7,0.00004415655],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99930763,0.00009952406,0.0002851026,0.0000746036,0.00010195544,0.0001311994],"domain_scores_gemma":[0.9996746,0.00006826922,0.00017921743,0.000027740329,0.000034589106,0.000015565396],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004058566,0.00006518426,0.00014610059,0.000024444846,0.00006988707,0.000061187355,0.00018140663,0.000050278406,0.00027927622],"category_scores_gemma":[0.0000074106315,0.000020905381,0.000045065775,0.00018018445,0.000053749394,0.00018514907,0.000027744083,0.00011067979,0.000011266735],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021231868,0.00003401078,0.2085585,0.0000021238077,0.0000014862653,9.809698e-7,0.00032604331,0.000005192447,0.7907278,0.000022026294,0.0000059380022,0.00029465344],"study_design_scores_gemma":[0.0001228574,0.00012422266,0.956328,0.000078149315,0.0000020806415,0.00001548443,0.00015863158,0.000025087727,0.042781234,0.0002620899,0.00004709441,0.000055061973],"about_ca_topic_score_codex":0.00030055552,"about_ca_topic_score_gemma":0.0006777841,"teacher_disagreement_score":0.74794656,"about_ca_system_score_codex":0.000024765914,"about_ca_system_score_gemma":0.0000051098123,"threshold_uncertainty_score":0.3057879},"labels":[],"label_agreement":null},{"id":"W2981155023","doi":"10.1038/s41396-019-0538-1","title":"Archaeal nitrification is constrained by copper complexation with organic matter in municipal wastewater treatment plants","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"National Research Foundation of Korea; Ministry of Science, ICT and Future Planning; National Research Foundation","keywords":"Biology; Nitrification; Wastewater; Activated sludge; Environmental chemistry; Organic matter; Oxidizing agent; Archaea; Sewage treatment; Yeast extract; Bacteria; Ecology; Environmental engineering; Chemistry; Nitrogen","score_opus":0.012534606856064518,"score_gpt":0.21232876664000622,"score_spread":0.1997941597839417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981155023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99672085,0.000022402895,0.000009434351,0.0017697715,0.000047167905,0.0002913265,0.000014752048,0.000008130088,0.0011161559],"genre_scores_gemma":[0.99649185,0.000017741653,0.00033671327,0.00023722777,0.000029459745,0.0000061803385,0.000027574062,0.000015337839,0.0028378966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989814,0.00010402039,0.00020734423,0.00016681728,0.00026251428,0.00027790066],"domain_scores_gemma":[0.99958926,0.000027045557,0.00010869952,0.00020124805,0.0000045901306,0.00006913668],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016168426,0.00015740166,0.00014789606,0.00003728609,0.00011839183,0.00005242603,0.00017918635,0.000039162882,0.007566493],"category_scores_gemma":[5.911676e-7,0.00008106437,0.000038209742,0.000080401136,0.00010773792,0.00016228436,0.00003358069,0.0001349504,0.0022081113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000523957,0.00040966223,0.44516304,0.000003900234,0.00014421628,0.00003324541,0.01171495,0.0003210618,0.53502613,0.0000063957596,0.0052358503,0.0014176056],"study_design_scores_gemma":[0.02113014,0.00284106,0.45065483,0.00017717175,0.0002508307,0.0040420042,0.006585459,0.0048546875,0.49687308,0.00096840726,0.01036233,0.0012599686],"about_ca_topic_score_codex":0.00027365025,"about_ca_topic_score_gemma":0.00009989889,"teacher_disagreement_score":0.038153026,"about_ca_system_score_codex":0.00025534464,"about_ca_system_score_gemma":0.000013655194,"threshold_uncertainty_score":0.9985688},"labels":[],"label_agreement":null},{"id":"W2981323893","doi":"10.1038/s41396-019-0506-9","title":"Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Ministerio de Ciencia e Innovación; Ministerio de Economía y Competitividad","keywords":"Mesopelagic zone; Bathyal zone; Biology; Water column; Plankton; Ecology; Trophic level; Oceanography; Community structure; Deep sea; Relative species abundance; Pelagic zone; Abundance (ecology); Fishery; Benthic zone; Geology","score_opus":0.013682159826226151,"score_gpt":0.21313904795231253,"score_spread":0.1994568881260864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981323893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99508935,0.000009717363,0.0000023963014,0.0016499617,0.00001838049,0.00008859943,6.9588054e-7,9.4932204e-7,0.0031399622],"genre_scores_gemma":[0.99951893,0.00002367004,0.000019919977,0.00022837409,0.000005972782,1.9135155e-7,1.9236113e-7,0.0000014542662,0.00020128314],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992118,0.0005317087,0.00004998768,0.000050025774,0.000057797482,0.00009870346],"domain_scores_gemma":[0.9994748,0.00033440074,0.000073730764,0.0001029029,0.0000021724504,0.000011957285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006880612,0.000046742123,0.00009107045,0.00002730755,0.00022014421,0.0000035831263,0.00023907148,0.000024286986,0.00057938136],"category_scores_gemma":[0.000009436138,0.000023818353,0.000010801744,0.0001255667,0.00020719877,0.00009753368,0.00036251952,0.00045860276,0.0000057741518],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017270287,0.00004787785,0.9899107,0.0000018454065,0.000007744833,0.0000025562845,0.0069849025,0.000117714604,0.002116952,0.00003970203,0.00018897162,0.000408322],"study_design_scores_gemma":[0.0002837231,0.00012449804,0.99715126,0.000011123941,0.000005236754,0.000020111005,0.0003861496,0.000040581443,0.0002127758,0.0016436758,0.00008828013,0.000032597498],"about_ca_topic_score_codex":0.0004026967,"about_ca_topic_score_gemma":0.034034517,"teacher_disagreement_score":0.03363182,"about_ca_system_score_codex":0.000029237315,"about_ca_system_score_gemma":0.000004020689,"threshold_uncertainty_score":0.98359185},"labels":[],"label_agreement":null},{"id":"W2982425222","doi":"10.1038/s41396-019-0541-6","title":"Novel probiotic approach to counter <i>Paenibacillus larvae</i> infection in honey bees","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Government of Canada","keywords":"American foulbrood; Biology; Honey bee; Probiotic; Microbiology; Pathogen; Lactobacillus plantarum; Brood; Bacteria; Zoology; Lactic acid","score_opus":0.02640672216137102,"score_gpt":0.2365568123271846,"score_spread":0.21015009016581357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982425222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99265325,0.00003216155,0.000046786747,0.0017512051,0.00018582973,0.00025502272,0.00000484991,0.000011193237,0.0050597233],"genre_scores_gemma":[0.99828625,0.00003166824,0.000068663656,0.0004438051,0.00039226617,0.000004944225,0.0000035921598,9.475857e-7,0.00076784054],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990662,0.00008500304,0.00015979889,0.000118067175,0.00027512197,0.0002958463],"domain_scores_gemma":[0.9996742,0.00009429166,0.000046344478,0.000040230818,0.00006648825,0.00007845749],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008088331,0.00008611611,0.000115079754,0.000022185122,0.00015923464,0.00014692287,0.00023170587,0.000059625625,0.00042224576],"category_scores_gemma":[0.000033445584,0.00002497989,0.00005805137,0.0003181668,0.000024799549,0.00011266181,0.00005799825,0.0003951771,0.00025005202],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013516063,0.0003783353,0.06976115,0.000019637271,0.000025115969,0.000003830965,0.000976361,0.0013157956,0.91064924,0.00042661728,0.0025023397,0.013806421],"study_design_scores_gemma":[0.00073286623,0.0008758907,0.96195173,0.00011231258,0.000014874953,0.000751399,0.00041453374,0.0015970921,0.004244579,0.0009536027,0.027968716,0.00038242983],"about_ca_topic_score_codex":0.00049171195,"about_ca_topic_score_gemma":0.0004445197,"teacher_disagreement_score":0.9064047,"about_ca_system_score_codex":0.00005023037,"about_ca_system_score_gemma":0.00001657805,"threshold_uncertainty_score":0.4623295},"labels":[],"label_agreement":null},{"id":"W2984078263","doi":"10.1038/s41396-019-0551-4","title":"Biodiversity of protists and nematodes in the wild nonhuman primate gut","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Economic and Social Research Council; Akademie Věd České Republiky; Leaky Foundation; Primate Conservation; University of Texas at Austin; Fogarty International Center; University of Arizona; Margot Marsh Biodiversity Foundation; National Institutes of Health; National Science Foundation","keywords":"Biology; Microbiome; Biodiversity; Phylogenetics; Primate; Microbial ecology; Ecology; Gut flora; Evolutionary biology; Metagenomics; Gut microbiome; Zoology; Bacteria; Genetics; Gene; Immunology","score_opus":0.007426909789199012,"score_gpt":0.2506874605647243,"score_spread":0.24326055077552527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2984078263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776715,0.00032885067,0.000013576697,0.0013351096,0.000044153905,0.00016329577,0.0000048614875,8.525319e-7,0.00034217347],"genre_scores_gemma":[0.9991339,0.00024337722,0.00007072376,0.00042555082,0.0000409322,5.7439803e-7,0.000002613795,0.0000022687514,0.000080065445],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995678,0.00007735538,0.00011052693,0.00006811945,0.00006244891,0.00011372962],"domain_scores_gemma":[0.99972343,0.0000073505316,0.00008728804,0.00013790168,0.000023616962,0.000020419246],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043575742,0.00005265279,0.00007795284,0.000018517025,0.00008798519,0.000019286816,0.00018158683,0.000040122737,0.00001765684],"category_scores_gemma":[0.000006570312,0.000028202712,0.00002950771,0.000029485765,0.000057480178,0.0000028497798,0.000058475973,0.00012989187,0.0000070755514],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000865056,0.000070564536,0.12948975,0.00008253184,0.000031709682,0.000003950817,0.0015287357,0.000010410994,0.86238277,0.00018673629,0.005503929,0.0006224202],"study_design_scores_gemma":[0.0016925886,0.0006001217,0.94801277,0.00009402016,0.000031986634,0.00086850335,0.0012469478,0.000020617246,0.032591578,0.0005109729,0.0141386045,0.00019128797],"about_ca_topic_score_codex":0.000025975973,"about_ca_topic_score_gemma":0.000029301043,"teacher_disagreement_score":0.8297912,"about_ca_system_score_codex":0.000005090273,"about_ca_system_score_gemma":0.00003948762,"threshold_uncertainty_score":0.11500732},"labels":[],"label_agreement":null},{"id":"W2992628624","doi":"10.1038/s41396-019-0561-2","title":"Novel copper-containing membrane monooxygenases (CuMMOs) encoded by alkane-utilizing <i>Betaproteobacteria</i>","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Genome Alberta; National Research Foundation; Genome British Columbia; Syncrude; U.S. Department of Energy; Government of Alberta; Genome Canada; Joint Genome Institute; Mitacs; National Research Foundation of Korea","keywords":"Biology; Betaproteobacteria; Methane monooxygenase; Gene; Monooxygenase; Ammonia monooxygenase; Bacteria; Methanotroph; Operon; Gene cluster; Anaerobic oxidation of methane; Alkane; Microbiology; Biochemistry; Genetics; Archaea; Escherichia coli; Enzyme; Cytochrome P450","score_opus":0.010480857030037552,"score_gpt":0.2070314086211625,"score_spread":0.19655055159112494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2992628624","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921198,0.00005497657,0.0001000572,0.0015478095,0.00048898655,0.0002475974,0.000030345087,0.000030755687,0.005379668],"genre_scores_gemma":[0.9962359,0.00009687983,0.00053234247,0.0017130855,0.00012147024,0.0000015784263,0.000008147735,0.00001871531,0.0012718913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985165,0.00008771928,0.00035957905,0.00022466709,0.00040644896,0.00040507142],"domain_scores_gemma":[0.9992655,0.000059201837,0.00025950887,0.00024099417,0.000014239903,0.00016056125],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00072642637,0.00019005117,0.00020160503,0.000022442075,0.00028309115,0.0001512773,0.0004922221,0.00008171651,0.0064097885],"category_scores_gemma":[0.000034965284,0.0001207871,0.00009761111,0.00015080773,0.00009917464,0.00031904943,0.00014379858,0.0003538878,0.0015838743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004978416,0.000041665615,0.0047114124,0.0000024920346,0.000015603531,0.0000020666464,0.00034008845,0.00007988532,0.9850752,0.00000495147,0.008521723,0.001155149],"study_design_scores_gemma":[0.0021877994,0.0002585837,0.009579005,0.000067969544,0.0000440167,0.00054115086,0.001004734,0.00076315063,0.9115088,0.00005587427,0.07342277,0.0005661715],"about_ca_topic_score_codex":0.000134108,"about_ca_topic_score_gemma":0.000045703262,"teacher_disagreement_score":0.0735664,"about_ca_system_score_codex":0.00013438052,"about_ca_system_score_gemma":0.000026676673,"threshold_uncertainty_score":0.9991935},"labels":[],"label_agreement":null},{"id":"W2993955438","doi":"10.1038/s41396-019-0560-3","title":"The relationship between fecal bile acids and microbiome community structure in pediatric Crohn’s disease","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Dalhousie University; Izaak Walton Killam Health Centre","funders":"Canadian Institutes of Health Research; Canadian Association of Gastroenterology; IWK Health Centre; Crohn's and Colitis Foundation; Nestlé Health Science; Nova Scotia Health Research Foundation; Pfizer","keywords":"Feces; Biology; Microbiome; Bile acid; Disease; Gut flora; Gastroenterology; Immunology; Crohn's disease; Internal medicine; Microbiology; Biochemistry; Bioinformatics; Medicine","score_opus":0.017427766290443836,"score_gpt":0.27647544418749265,"score_spread":0.2590476778970488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2993955438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966153,0.0014601613,0.000012796224,0.0015665691,0.00013180936,0.00013911398,0.00003542365,0.0000025359507,0.000036312496],"genre_scores_gemma":[0.9988083,0.0002576477,0.000031785654,0.00018872257,0.0003537888,9.70521e-7,0.00002702528,0.00001036151,0.0003213781],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990612,0.00038624048,0.00018844975,0.00008789051,0.00006419206,0.0002119968],"domain_scores_gemma":[0.9993479,0.00014091881,0.00009539032,0.000285669,0.000030207933,0.000099882214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062331767,0.00009433901,0.00008897366,0.000038040514,0.0005916415,0.000074766205,0.00027563807,0.000091723865,0.000012642027],"category_scores_gemma":[0.000083409126,0.000053499505,0.000045771758,0.00009043972,0.00007593979,0.000005240567,0.00012577945,0.0007018751,0.000008180633],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050366256,0.000012953008,0.97334236,0.000019662028,0.000008647889,0.0000013767809,0.00018155765,0.000008101831,0.024963802,0.00003633944,0.0011666414,0.00020816617],"study_design_scores_gemma":[0.00040468934,0.000054333625,0.9956173,0.000008281637,0.000019755125,0.000041822805,0.00010454513,0.0000019240072,0.00018649428,0.00096016045,0.00252745,0.000073245785],"about_ca_topic_score_codex":0.000021943155,"about_ca_topic_score_gemma":0.00007885089,"teacher_disagreement_score":0.024777306,"about_ca_system_score_codex":0.000021355541,"about_ca_system_score_gemma":0.00013148914,"threshold_uncertainty_score":0.4550488},"labels":[],"label_agreement":null},{"id":"W2996038863","doi":"10.1038/s41396-019-0563-0","title":"Swift evolutionary response of microbes to a rise in anthropogenic mercury in the Northern Hemisphere","year":2019,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; China Scholarship Council; Suomalainen Tiedeakatemia; ArcticNet","keywords":"Mercury (programming language); Biology; Population; Ecology; Northern Hemisphere; Ecosystem; Methylmercury; Environmental chemistry; Bioaccumulation; Atmospheric sciences","score_opus":0.010363495766190603,"score_gpt":0.2587705433642688,"score_spread":0.2484070475980782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2996038863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935954,0.0004890965,0.000011443637,0.0047415467,0.00007464247,0.00017194914,0.0000040386917,0.000002462902,0.00090938655],"genre_scores_gemma":[0.99899083,0.00009609514,0.000080775746,0.00037866877,0.00002484671,0.000003471377,1.9635263e-7,0.0000055045625,0.00041959944],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998869,0.0003317814,0.00024999114,0.0000874776,0.00027358066,0.00018817729],"domain_scores_gemma":[0.9994838,0.00018913728,0.00009221304,0.00018604251,0.000009721942,0.00003903913],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012942703,0.00008210308,0.00012194921,0.000035007186,0.00010095023,0.000012773131,0.0003205848,0.000025919306,0.0015907927],"category_scores_gemma":[0.00008130427,0.000044425997,0.000054246324,0.0002939014,0.00013159016,0.000106288455,0.00009449018,0.00021344065,0.00034824785],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054069137,0.00013346535,0.8035666,0.0000051647617,0.000018919478,0.000014240187,0.020420143,0.003292631,0.16307841,0.000012185601,0.0065311533,0.002386428],"study_design_scores_gemma":[0.0003753252,0.000093332244,0.9861246,0.000040931645,0.000007275861,0.0001217687,0.006422652,0.000046000685,0.001452004,0.0003535288,0.004880824,0.000081752594],"about_ca_topic_score_codex":0.00031598491,"about_ca_topic_score_gemma":0.0008323565,"teacher_disagreement_score":0.18255804,"about_ca_system_score_codex":0.000111859146,"about_ca_system_score_gemma":0.000031590225,"threshold_uncertainty_score":0.9993219},"labels":[],"label_agreement":null},{"id":"W2999071584","doi":"10.1038/s41396-019-0581-y","title":"Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Comisión Nacional de Investigación Científica y Tecnológica; Gordon and Betty Moore Foundation; Natural Environment Research Council; Sight Research UK; Leverhulme Trust; David and Lucile Packard Foundation","keywords":"Biology; Sediment; Diatom; Archaea; Ecology; Carbon cycle; Ribosomal RNA; Community structure; Ecosystem; Bacteria; Gene; Paleontology","score_opus":0.033840154756157696,"score_gpt":0.2566780333872933,"score_spread":0.22283787863113558,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2999071584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99441826,0.000010337411,0.00003364267,0.003433195,0.000056734334,0.00038920963,0.000005891247,0.0000033673043,0.0016493716],"genre_scores_gemma":[0.99928993,0.000017098804,0.00007947007,0.00056430267,0.000017398215,0.0000023302034,0.0000022356999,0.0000036096035,0.000023641293],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99840283,0.0009157588,0.00023640832,0.00009979073,0.00015417491,0.00019103523],"domain_scores_gemma":[0.9991835,0.0004520252,0.00021575503,0.0001039048,0.000010070056,0.000034739445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008602883,0.00009756866,0.00024159829,0.000019616917,0.00030176595,0.0000144234755,0.000565968,0.00005180931,0.00049557287],"category_scores_gemma":[0.000089481415,0.000060870374,0.000058555554,0.00018106043,0.00027624122,0.000103861945,0.0005849925,0.0007327917,0.000007793906],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0078363465,0.00048435476,0.29262227,0.000025682357,0.000305891,0.00008605529,0.22013542,0.14412063,0.33279243,0.00022876031,0.0006076005,0.00075455976],"study_design_scores_gemma":[0.006838741,0.00061392837,0.9516332,0.000030461943,0.00008136586,0.000041871524,0.022621857,0.0031122416,0.0059236386,0.008744242,0.000105862644,0.00025256124],"about_ca_topic_score_codex":0.0015698257,"about_ca_topic_score_gemma":0.0030607933,"teacher_disagreement_score":0.65901095,"about_ca_system_score_codex":0.00011297938,"about_ca_system_score_gemma":0.000021324033,"threshold_uncertainty_score":0.54261756},"labels":[],"label_agreement":null},{"id":"W3005272128","doi":"10.1038/s41396-020-0597-3","title":"Insights into the bioavailability of oceanic dissolved Fe from phytoplankton uptake kinetics","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal ecosystems","field":"Earth and Planetary Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Israel Science Foundation; Armenian National Science and Education Fund; National Science Foundation","keywords":"Seawater; Phytoplankton; Bioavailability; Environmental chemistry; Chemical oceanography; Genetic algorithm; Oceanography; Siderophore; Biology; Chemistry; Ecology; Nutrient; Microorganism; Geology","score_opus":0.017294742169897664,"score_gpt":0.195778558977656,"score_spread":0.17848381680775835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3005272128","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909596,0.0011639699,0.00012166679,0.0033182984,0.00033925025,0.0000969107,0.00002618783,0.000011319306,0.0039628027],"genre_scores_gemma":[0.9986207,0.00014499217,0.00006106823,0.00052843266,0.000560732,1.6021347e-7,0.000014155363,0.0000027452877,0.00006704009],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989216,0.00016396816,0.00034653826,0.00012052462,0.00030111437,0.00014627332],"domain_scores_gemma":[0.9992319,0.00018241249,0.00020022974,0.00021466661,0.00004654643,0.00012424332],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022810012,0.00010761146,0.00017823726,0.0000141093915,0.00019833527,0.00007803427,0.00052044576,0.000038072565,0.0016072758],"category_scores_gemma":[0.0000691007,0.00004897952,0.000091993345,0.00016757341,0.00009401207,0.00009379545,0.000038006972,0.00031315687,0.00009719286],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010335433,0.00021468397,0.5268106,0.0001760516,0.0006406643,0.00008757544,0.04343526,0.0030444902,0.013077861,0.0004971742,0.025470238,0.3855119],"study_design_scores_gemma":[0.00046610544,0.0005039219,0.8819321,0.000035120458,0.00007784993,0.000025759726,0.0023005456,0.02445886,0.0014724304,0.008043814,0.080482185,0.00020130616],"about_ca_topic_score_codex":0.0013196195,"about_ca_topic_score_gemma":0.0025573948,"teacher_disagreement_score":0.3853106,"about_ca_system_score_codex":0.0000030923884,"about_ca_system_score_gemma":0.00004705638,"threshold_uncertainty_score":0.99930537},"labels":[],"label_agreement":null},{"id":"W3006143003","doi":"10.1038/s41396-020-0604-8","title":"Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Gordon and Betty Moore Foundation","keywords":"Biology; Water column; Column (typography); Oceanography; Ecology","score_opus":0.020780936737306726,"score_gpt":0.25472526601832457,"score_spread":0.23394432928101785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006143003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96395123,0.000012307279,0.000060591876,0.032213148,0.000104404724,0.00023650106,0.000006207063,0.0000058300866,0.0034097552],"genre_scores_gemma":[0.9984662,0.00005773792,0.000052828556,0.0009509818,0.00013179057,0.0000022925935,0.0000033841827,0.000007941481,0.00032685482],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992384,0.00010612722,0.00018280439,0.0001726014,0.00010897268,0.00019110483],"domain_scores_gemma":[0.9997009,0.000018840106,0.00006444492,0.0001561941,0.0000065471354,0.00005305109],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041217048,0.000096850345,0.00011095665,0.000010455258,0.00034490932,0.0006136727,0.0005266752,0.000030774616,0.0006952077],"category_scores_gemma":[0.00000531178,0.00004710702,0.00003282997,0.00008390695,0.00016053165,0.00055170315,0.0002228121,0.0004475762,0.000055909153],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018601897,0.00031897408,0.0026571918,0.000023019235,0.00015329117,0.00025963047,0.09650505,0.006484713,0.8673525,0.0013128064,0.017673958,0.0053987056],"study_design_scores_gemma":[0.01580948,0.002902915,0.635573,0.00024966776,0.00055995653,0.015178042,0.11315011,0.011525225,0.07864304,0.027621884,0.09638647,0.0024001745],"about_ca_topic_score_codex":0.00051375467,"about_ca_topic_score_gemma":0.0008295168,"teacher_disagreement_score":0.78870946,"about_ca_system_score_codex":0.0000637178,"about_ca_system_score_gemma":0.000013014253,"threshold_uncertainty_score":0.76120365},"labels":[],"label_agreement":null},{"id":"W3007025444","doi":"10.1038/s41396-020-0612-8","title":"Competition experiments in a soil microcosm reveal the impact of genetic and biotic factors on natural yeast populations","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; PROTEO","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Microcosm; Biology; Competition (biology); Yeast; Ecology; Biotic component; Natural (archaeology); Abiotic component; Genetics","score_opus":0.025280501511327973,"score_gpt":0.28942148880943525,"score_spread":0.26414098729810725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007025444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976366,0.0013115846,0.000024210422,0.00083012244,0.00006066187,0.000072568946,0.000010531504,0.0000011799735,0.000052505937],"genre_scores_gemma":[0.99952984,0.00013681447,0.00003639934,0.00010648842,0.00015283102,8.448222e-7,0.000004996566,0.0000058478176,0.000025939959],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99957407,0.000054917808,0.00013244839,0.00007258108,0.00006863711,0.0000973411],"domain_scores_gemma":[0.99979365,0.000006823175,0.000075550895,0.00006842394,0.000021946478,0.00003363483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053866006,0.00007683453,0.00008333405,0.000016194012,0.00011450336,0.000016907214,0.00008897677,0.00002675559,0.00001046834],"category_scores_gemma":[0.000020169477,0.00003618753,0.000065942564,0.000044217206,0.000057329667,0.000001906996,0.000046877634,0.00012418414,0.0000011448882],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013401013,0.00006605929,0.079707116,0.0000071023396,0.00013360573,0.0000026362122,0.0018973451,0.0012697256,0.914205,0.000041490355,0.0019223576,0.00061352365],"study_design_scores_gemma":[0.00049223553,0.00040623403,0.9766476,0.000030283698,0.000019866997,0.000050058137,0.0007423945,0.00021429331,0.02110114,0.00008097163,0.00012486249,0.00009003921],"about_ca_topic_score_codex":0.000045558205,"about_ca_topic_score_gemma":0.000013837941,"teacher_disagreement_score":0.8969405,"about_ca_system_score_codex":0.000010724371,"about_ca_system_score_gemma":0.000020481306,"threshold_uncertainty_score":0.14756848},"labels":[],"label_agreement":null},{"id":"W3007625293","doi":"10.1038/s41396-020-0614-6","title":"Plant communities mediate the interactive effects of invasion and drought on soil microbial communities","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Algoma University","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Forest Service; Florida Department of Agriculture and Consumer Services; U.S. Department of Agriculture","keywords":"Species richness; Plant community; Ecosystem; Biology; Ecology; Microbial population biology; Biomass (ecology); Community structure; Global change; Agronomy; Climate change; Bacteria","score_opus":0.01681527420070833,"score_gpt":0.21033411016700906,"score_spread":0.19351883596630073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007625293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98971474,0.00005822229,0.000011667037,0.009137976,0.00014830807,0.0001013551,0.000010887328,0.0000064279443,0.0008104423],"genre_scores_gemma":[0.9942227,0.00035968065,0.000012514577,0.0052908706,0.00006944365,0.0000020063217,0.000008280589,0.0000067458564,0.000027747996],"study_design_codex":"qualitative","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980813,0.0014968477,0.00015319978,0.000038936952,0.00008362301,0.00014608246],"domain_scores_gemma":[0.9977698,0.0018051247,0.00016805637,0.00020397209,0.000008221919,0.000044868924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039871447,0.000108825916,0.0001755774,0.000015178553,0.0008346567,0.000025622508,0.00066996046,0.000052885338,0.00061639125],"category_scores_gemma":[0.00003158497,0.00005872047,0.000047892143,0.000054758264,0.0008439534,0.00009637501,0.0006141545,0.001117435,0.000041565112],"study_design_candidate":"qualitative","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017081648,0.00036656103,0.0037046422,0.00009762221,0.00032222105,0.000021171201,0.5285623,0.0024106423,0.34475332,0.00065523415,0.11486351,0.0025345935],"study_design_scores_gemma":[0.011355121,0.013953142,0.25721526,0.0014155523,0.00080702914,0.0024479956,0.23604481,0.0053229462,0.34982362,0.033624258,0.08584223,0.0021480147],"about_ca_topic_score_codex":0.0006084749,"about_ca_topic_score_gemma":0.0024133332,"teacher_disagreement_score":0.2925175,"about_ca_system_score_codex":0.000025825573,"about_ca_system_score_gemma":0.000010632429,"threshold_uncertainty_score":0.6749052},"labels":[],"label_agreement":null},{"id":"W3009802967","doi":"10.1038/s41396-020-0618-2","title":"Oxygen isotope effects during microbial sulfate reduction: applications to sediment cell abundances","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Ocean Sciences; McGill University; National Aeronautics and Space Administration; Harvard University; Brown University; National Science Foundation","keywords":"Sulfate; Sulfate-reducing bacteria; Desulfovibrio vulgaris; Desulfovibrio; Environmental chemistry; Sulfide; Chemistry; Stable isotope ratio; Anaerobic bacteria; Oxygen; Isotopes of oxygen; Bacteria; Geology; Nuclear chemistry","score_opus":0.008238135024483813,"score_gpt":0.20776951580002806,"score_spread":0.19953138077554425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3009802967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9816418,0.0002442156,0.0010361986,0.012283629,0.00033583178,0.00043366634,0.000001819198,0.000025178304,0.003997609],"genre_scores_gemma":[0.99511117,0.0001406009,0.001234102,0.0007948974,0.0008742868,0.000024690236,8.8993676e-7,0.000016005073,0.0018033431],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990927,0.00008018352,0.00020018223,0.00017953172,0.00021093515,0.00023645861],"domain_scores_gemma":[0.99949265,0.00001712563,0.00010479161,0.00013880727,0.000006648012,0.00023995343],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00020711527,0.00011098067,0.000108136686,0.00001527886,0.0004927964,0.0000719746,0.0003352298,0.000034128814,0.0012075435],"category_scores_gemma":[0.0000039732404,0.00007122188,0.000060280567,0.0002470812,0.000058307567,0.000094906645,0.00014613489,0.0003150954,0.0014803862],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045615307,0.000048313184,0.00013523661,0.000018378623,0.000028027522,0.0000070752785,0.0031098328,0.025993818,0.96138644,0.000011854819,0.0073380084,0.0018774009],"study_design_scores_gemma":[0.0020174563,0.0005228006,0.010957371,0.00006870668,0.00016931393,0.00059377594,0.00085276674,0.000660312,0.6776002,0.0013633267,0.30447525,0.0007186853],"about_ca_topic_score_codex":0.000016874945,"about_ca_topic_score_gemma":9.4068423e-7,"teacher_disagreement_score":0.29713723,"about_ca_system_score_codex":0.00008615856,"about_ca_system_score_gemma":0.000009939376,"threshold_uncertainty_score":0.9997055},"labels":[],"label_agreement":null},{"id":"W3011257059","doi":"10.1038/s41396-020-0624-4","title":"Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of British Columbia","funders":"Leibniz-Gemeinschaft; Office of Science; Universität Bremen; Ministerium für Kultur und Wissenschaft des Landes Nordrhein-Westfalen; Joint Genome Institute; Deutsche Forschungsgemeinschaft; Alfred P. Sloan Foundation; Gottfried Wilhelm Leibniz Universität Hannover; U.S. Department of Energy","keywords":"Lipidome; Biology; Archaea; Metagenomics; Bacteria; Membrane lipids; Autotroph; Membrane curvature; Extreme environment; Ecology; Microbial population biology; Biochemistry; Lipid metabolism; Lipid bilayer; Membrane; Paleontology","score_opus":0.010732239836247206,"score_gpt":0.21812587042776016,"score_spread":0.20739363059151295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3011257059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99678665,0.00007880614,0.00091809436,0.0014094551,0.00008481618,0.00012389272,0.000006841922,0.000017098919,0.0005743333],"genre_scores_gemma":[0.99729437,0.00005573342,0.0020724512,0.00041672066,0.00006916317,0.000002115858,0.000010451727,0.000021987707,0.000057023266],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.99807775,0.00036940706,0.000446235,0.00026807643,0.00047605575,0.00036250474],"domain_scores_gemma":[0.998979,0.00007383653,0.0003346441,0.00030387385,0.000020532745,0.00028812388],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005687819,0.00021106689,0.00042817928,0.00007083255,0.00013481457,0.00005937074,0.0005381078,0.00009034048,0.0055747423],"category_scores_gemma":[0.000022165694,0.00012310172,0.000118138065,0.0019391531,0.00020110254,0.00019358075,0.00006989804,0.00047888714,0.000049734866],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029910347,0.00015602776,0.0777078,0.000008345944,0.0003760305,0.000021430054,0.0032662463,0.80844504,0.10884367,0.00001110628,0.00007832833,0.00078684965],"study_design_scores_gemma":[0.0028910362,0.0015287474,0.50294495,0.00003732671,0.0015827853,0.000030975727,0.0017434513,0.48174784,0.005785109,0.00010698529,0.00090284157,0.0006979853],"about_ca_topic_score_codex":0.00018115726,"about_ca_topic_score_gemma":0.00025594948,"teacher_disagreement_score":0.42523712,"about_ca_system_score_codex":0.000106067535,"about_ca_system_score_gemma":0.00004438503,"threshold_uncertainty_score":0.99533427},"labels":[],"label_agreement":null},{"id":"W3012829164","doi":"10.1038/s41396-020-0631-5","title":"Niche-based assembly of bacterial consortia on the diatom <i>Thalassiosira rotula</i> is stable and reproducible","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Diatoms and Algae Research","field":"Materials Science","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Deutscher Akademischer Austauschdienst","keywords":"Biology; Diatom; Niche; Ecological niche; Geomicrobiology; Ecology; Evolutionary biology; Environmental biotechnology; Botany; Microbial ecology; Bacteria; Paleontology","score_opus":0.04553646408855533,"score_gpt":0.2734867397434967,"score_spread":0.22795027565494136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012829164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97371554,0.00019385731,0.000056814963,0.024904829,0.00021388997,0.0001803982,0.000032720825,0.000015593316,0.00068634225],"genre_scores_gemma":[0.99718744,0.000063634296,0.000109002394,0.002086997,0.00041395501,0.000005510777,7.3366283e-7,0.0000170926,0.00011564589],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981791,0.00033070814,0.00033128174,0.00026160374,0.000567493,0.00032984954],"domain_scores_gemma":[0.99872917,0.00034111706,0.00024017309,0.00041260076,0.000110008645,0.00016693836],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0021594218,0.00012736497,0.0002274549,0.000028721484,0.00033761852,0.0003513309,0.00050341844,0.000042612508,0.0020519858],"category_scores_gemma":[0.00038216173,0.0000632264,0.0000784939,0.00017201123,0.00019512975,0.00013917637,0.0001357196,0.0003377738,0.00008087984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024137305,0.00006834092,0.0009106599,0.000024473447,0.000020461042,0.000009918195,0.00052261667,0.00007213078,0.96966547,0.0003875244,0.027537908,0.00053910154],"study_design_scores_gemma":[0.00066985283,0.00036597467,0.00188003,0.000057173627,0.000026826032,0.000023092029,0.00024003252,0.0006590005,0.9854862,0.00033199825,0.010145251,0.00011453328],"about_ca_topic_score_codex":0.000029543733,"about_ca_topic_score_gemma":0.0000016597078,"teacher_disagreement_score":0.023471875,"about_ca_system_score_codex":0.000017884784,"about_ca_system_score_gemma":0.0002598681,"threshold_uncertainty_score":0.9988603},"labels":[],"label_agreement":null},{"id":"W3020476340","doi":"10.1038/s41396-020-0650-2","title":"High functional diversity among <i>Nitrospira</i> populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Russian Science Foundation; Joint Genome Institute","keywords":"Nitrospira; Biology; Nitrobacter; Rotating biological contactor; Operational taxonomic unit; Metagenomics; Archaea; 16S ribosomal RNA; Ecology; Bacteria; Nitrate; Nitrite; Sewage treatment; Biochemistry; Genetics; Environmental science; Gene; Environmental engineering","score_opus":0.0875821900817506,"score_gpt":0.22380935264839397,"score_spread":0.13622716256664336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3020476340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983877,0.000025240579,0.0000138579335,0.0010888997,0.00017404273,0.00016063468,0.000055439938,0.000021778736,0.00007239742],"genre_scores_gemma":[0.9984588,0.000022706881,0.0009000561,0.00027568647,0.00015433985,0.000006933559,0.000063493615,0.000009931392,0.00010807259],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99872726,0.00030499534,0.00025176432,0.00014470918,0.0002304679,0.00034080405],"domain_scores_gemma":[0.9995101,0.000076684715,0.00013895723,0.00013240418,0.000005165153,0.00013667425],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021578466,0.00020574167,0.00023108907,0.000030669897,0.00091738324,0.00008797472,0.00030407132,0.00006288098,0.0012719735],"category_scores_gemma":[0.0000053522144,0.000116154915,0.00013708601,0.000089376656,0.00022319787,0.00024096761,0.00046201685,0.00030603536,0.00009921914],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046383764,0.0001966998,0.9693544,0.000001690997,0.00008742974,0.00011166907,0.013978477,0.002983571,0.011956889,0.000034903467,0.0004369673,0.0003934507],"study_design_scores_gemma":[0.007291613,0.0012886212,0.961524,0.000053992357,0.00020208966,0.00037403314,0.007750717,0.0044030393,0.014135128,0.00071921194,0.001671628,0.00058592134],"about_ca_topic_score_codex":0.004610238,"about_ca_topic_score_gemma":0.0018501829,"teacher_disagreement_score":0.007830409,"about_ca_system_score_codex":0.00030528358,"about_ca_system_score_gemma":0.000008202526,"threshold_uncertainty_score":0.999641},"labels":[],"label_agreement":null},{"id":"W3020822222","doi":"10.1038/s41396-020-0669-4","title":"Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":294,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Graduate Education; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Proteobacteria; Metagenomics; Hydrothermal vent; Ecology; Microbial ecology; Lineage (genetic); Adaptation (eye); Autotroph; Comparative genomics; Niche; Evolutionary biology; Genome; Genomics; Hydrothermal circulation; Genetics; Gene; Bacteria","score_opus":0.024727062839277912,"score_gpt":0.2099418730417747,"score_spread":0.18521481020249678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3020822222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866364,0.0000025482643,0.002325021,0.010475252,0.000046974063,0.00022880288,0.000064434564,0.0000069403627,0.0002136522],"genre_scores_gemma":[0.9966095,0.0000155485,0.00062051584,0.0025865673,0.000055268603,0.0000035086362,0.00007613548,0.000004431822,0.000028542898],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993273,0.00012590761,0.000176147,0.00011209585,0.0000973903,0.00016117962],"domain_scores_gemma":[0.9996716,0.000020746802,0.000094667055,0.00011977593,0.0000027444794,0.000090460846],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002208368,0.00008087299,0.000092293274,0.000011949724,0.00022191858,0.000022293934,0.0004276244,0.0000517431,0.0070053176],"category_scores_gemma":[0.000019984322,0.00006446721,0.000031021078,0.00012081585,0.00007440904,0.00010940331,0.0003987574,0.0003068892,0.0005972426],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023576677,0.00015759126,0.012794051,0.0000015674079,0.000016070693,0.0000030551078,0.0054744813,0.0061081634,0.972999,0.000012245942,0.0010029515,0.0011950941],"study_design_scores_gemma":[0.0004015108,0.00019007303,0.9875498,0.000002055475,0.000008641953,0.00002000049,0.00025616985,0.00094558415,0.0002730565,0.00032844194,0.009934088,0.000090603906],"about_ca_topic_score_codex":0.000114248025,"about_ca_topic_score_gemma":0.00015511211,"teacher_disagreement_score":0.9747557,"about_ca_system_score_codex":0.0001862622,"about_ca_system_score_gemma":0.00000917692,"threshold_uncertainty_score":0.9939024},"labels":[],"label_agreement":null},{"id":"W3024383636","doi":"10.1038/s41396-020-0672-9","title":"Fish oil supplementation reduces maternal defensive inflammation and predicts a gut bacteriome with reduced immune priming capacity in infants","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Pediatric health and respiratory diseases","field":"Health Professions","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology; Government of Canada","keywords":"Biology; Immune system; Fish <Actinopterygii>; Inflammation; Priming (agriculture); Immunology; Zoology; Fishery; Botany","score_opus":0.06568289278507707,"score_gpt":0.34369793649931385,"score_spread":0.2780150437142368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3024383636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862436,0.00012835227,0.000015367454,0.012906344,0.00018712897,0.00029847684,0.000045073222,0.000025628417,0.00015003688],"genre_scores_gemma":[0.99578136,0.00039629688,0.00017893706,0.0022593935,0.0012799058,0.000036077,0.000012892148,0.000015746966,0.00003940939],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997715,0.0006956183,0.00070327404,0.00014960582,0.00031939032,0.00041712887],"domain_scores_gemma":[0.9986827,0.00017300954,0.00054837216,0.000093888586,0.00016182047,0.00034020966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007580597,0.0001369944,0.00022395757,0.00010758456,0.00073731726,0.000044578308,0.00013820519,0.00008511517,0.00015180935],"category_scores_gemma":[0.00032327088,0.000086222215,0.000026562693,0.00019646388,0.000060265887,0.00036247482,0.000060914736,0.00073562237,0.000011429815],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048977197,0.00012609869,0.6557443,0.002464564,0.00021232858,0.00021034453,0.11695085,0.00025844682,0.15721928,0.000058788533,0.0071103065,0.054746997],"study_design_scores_gemma":[0.0032767148,0.000218346,0.9887133,0.00048336157,0.00005851196,0.00005418427,0.0039278413,0.00016007738,0.0013654034,0.00007198916,0.0015187499,0.00015151672],"about_ca_topic_score_codex":0.00013982203,"about_ca_topic_score_gemma":0.000057888286,"teacher_disagreement_score":0.332969,"about_ca_system_score_codex":0.0001269482,"about_ca_system_score_gemma":0.0006300438,"threshold_uncertainty_score":0.56709224},"labels":[],"label_agreement":null},{"id":"W3024697245","doi":"10.1038/s41396-020-0680-9","title":"Lake characteristics influence how methanogens in littoral sediments respond to terrestrial litter inputs","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Atmospheric and Environmental Gas Dynamics","field":"Environmental Science","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Natural Resources Canada; Laurentian University","funders":"NERC Biomolecular Analysis Facility; Natural Environment Research Council; Research Councils UK; Sight Research UK","keywords":"Methanogen; Sediment; Litter; Organic matter; Biology; Eutrophication; Ecology; Nutrient; Mesocosm; Oceanography; Environmental science; Methane; Geology","score_opus":0.013815491720746679,"score_gpt":0.22205240250254177,"score_spread":0.2082369107817951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3024697245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9780343,0.0000067507694,0.0021747472,0.019225,0.00022496138,0.00017121405,0.000006238225,0.000013228413,0.0001435131],"genre_scores_gemma":[0.9869887,0.000024850673,0.0035351452,0.008559547,0.0003504572,0.000005524607,0.0000017591015,0.000021326328,0.0005126628],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984661,0.00015645185,0.0002904002,0.00023072863,0.0004732501,0.00038309733],"domain_scores_gemma":[0.999312,0.00004079057,0.00013999033,0.00018637601,0.0000026677747,0.0003181638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038917628,0.0001833934,0.00019504919,0.000009588365,0.00014036134,0.00010914332,0.0005252014,0.00007089407,0.00070993294],"category_scores_gemma":[0.00009678237,0.00013153155,0.00006733817,0.00026184527,0.00013703312,0.0002769219,0.0003806718,0.00047699298,0.00029320677],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000993719,0.00020056184,0.82926846,0.00000791062,0.00006934402,0.00037571503,0.0125741195,0.07760068,0.048585344,0.000005722158,0.006446341,0.023872055],"study_design_scores_gemma":[0.0010280047,0.00037988505,0.9159524,0.000030063855,0.000033722918,0.00008984495,0.00025533634,0.0040336004,0.00048705842,0.00015331202,0.07717836,0.00037841045],"about_ca_topic_score_codex":0.000023172928,"about_ca_topic_score_gemma":0.000027419423,"teacher_disagreement_score":0.086683914,"about_ca_system_score_codex":0.00019766318,"about_ca_system_score_gemma":0.00001475654,"threshold_uncertainty_score":0.77732676},"labels":[],"label_agreement":null},{"id":"W3028270276","doi":"10.1038/s41396-020-0678-3","title":"Linking perturbations to temporal changes in diversity, stability, and compositions of neonatal calf gut microbiota: prediction of diarrhea","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":158,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Alberta","funders":"Agricultural Science and Technology Innovation Program; Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Manitoba; Chinese Academy of Agricultural Sciences; University of Washington","keywords":"Biology; Gut flora; Diarrhea; Lachnospiraceae; Antimicrobial; Ruminococcus; Microbiology; Microbiome; Antimicrobial peptides; Immunology; Bacteria; Firmicutes; Internal medicine; Bioinformatics; Medicine","score_opus":0.02733295253647221,"score_gpt":0.24655260209971275,"score_spread":0.21921964956324053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3028270276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906391,0.0002902958,0.000993753,0.007717787,0.000054310654,0.000121362675,0.00016197535,0.0000019144059,0.00001953859],"genre_scores_gemma":[0.99885964,0.0001469974,0.00046926935,0.00035644692,0.0001221887,7.0157387e-7,0.000033268076,0.0000041592834,0.0000073129445],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995142,0.000066584136,0.00016685118,0.000092726594,0.000061716935,0.00009787691],"domain_scores_gemma":[0.9996911,0.000013228378,0.00008357513,0.000075290955,0.00006674941,0.00007004595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018415357,0.000057288773,0.00010500642,0.00003655719,0.00014702087,0.000008691491,0.000112674636,0.000055213073,0.000014930956],"category_scores_gemma":[0.000019254177,0.000045834517,0.000033012384,0.00007992313,0.00006658871,0.0000040988543,0.00024126629,0.00013715199,3.6222823e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044121047,0.000027313703,0.045346223,0.000031730193,0.000014563859,6.209405e-7,0.0025863124,0.0000289842,0.95115685,0.000011321499,0.000597141,0.00015482279],"study_design_scores_gemma":[0.0020258978,0.0019461293,0.65686184,0.00023114993,0.00009798805,0.0002442405,0.0030304038,0.0003439193,0.32943588,0.000198386,0.0053247325,0.00025940975],"about_ca_topic_score_codex":0.000061517814,"about_ca_topic_score_gemma":0.00028957575,"teacher_disagreement_score":0.62172097,"about_ca_system_score_codex":0.000011840955,"about_ca_system_score_gemma":0.000051615185,"threshold_uncertainty_score":0.18690772},"labels":[],"label_agreement":null},{"id":"W3032958094","doi":"10.1038/s41396-020-0693-4","title":"Changes in the transcriptome, ploidy, and optimal light intensity of a cryptomonad upon integration into a kleptoplastic dinoflagellate","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Research Organization of Information and Systems","keywords":"Biology; Dinoflagellate; Transcriptome; Ecology; Evolutionary biology; Genetics; Gene; Gene expression","score_opus":0.01370248721800209,"score_gpt":0.218922241135743,"score_spread":0.2052197539177409,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3032958094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896815,0.00040755968,0.0021919752,0.007470932,0.00006165778,0.00010695565,0.0000051213656,0.0000021025405,0.00007219389],"genre_scores_gemma":[0.9985733,0.0003168105,0.00016891638,0.00076075405,0.00015930811,0.000001629692,0.000004108184,0.000004410337,0.000010755115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944955,0.000107607026,0.00012155653,0.000102151076,0.000110082554,0.000109074776],"domain_scores_gemma":[0.9997308,0.000015798543,0.00007391876,0.0000851467,0.000048289858,0.000046019293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028120246,0.00008541048,0.00010961417,0.000024620284,0.00010525246,0.000028994682,0.00023073694,0.00006098437,0.00001180009],"category_scores_gemma":[0.0000526657,0.000050084793,0.00004699881,0.00007908067,0.00006441867,0.000005402864,0.000059960854,0.0002258702,0.0000015028238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004312287,0.000029920224,0.0020319163,0.000019104724,0.000041994663,0.000011027358,0.009679785,0.000055832086,0.9855065,0.000064844346,0.0005391537,0.001588728],"study_design_scores_gemma":[0.002073867,0.0025018845,0.06308631,0.00011358392,0.00016842132,0.00050681137,0.007355933,0.0016052854,0.91509616,0.0016633401,0.005444957,0.00038342155],"about_ca_topic_score_codex":0.000020861711,"about_ca_topic_score_gemma":0.00011380067,"teacher_disagreement_score":0.07041028,"about_ca_system_score_codex":0.00000588329,"about_ca_system_score_gemma":0.000022605502,"threshold_uncertainty_score":0.20423986},"labels":[],"label_agreement":null},{"id":"W3042868212","doi":"10.1038/s41396-020-0716-1","title":"Groundwater <i>Elusimicrobia</i> are metabolically diverse compared to gut microbiome <i>Elusimicrobia</i> and some have a novel nitrogenase paralog","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Lawrence Berkeley National Laboratory; Biological and Environmental Research; Japan Atomic Energy Agency; Agency for Natural Resources and Energy; Ministry of Economy, Trade and Industry; Office of Science; Canada Research Chairs; Innovative Genomics Institute; Camille and Henry Dreyfus Foundation; U.S. Department of Energy","keywords":"Biology; Genome; Clade; Phylogenomics; Phylum; Evolutionary biology; Phylogenetics; Metagenomics; Comparative genomics; Ecology; Genetics; Gene; Genomics","score_opus":0.027225277049246318,"score_gpt":0.22824528711993694,"score_spread":0.20102001007069062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042868212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9726249,0.00010707478,0.00045282816,0.02582848,0.0002444997,0.00038285897,0.00011691925,0.000044061097,0.00019835688],"genre_scores_gemma":[0.9226755,0.000058231337,0.0013308765,0.07531907,0.00028693976,0.000006734279,0.000024123472,0.00003399694,0.00026455114],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978262,0.00041264136,0.00049019913,0.00040755625,0.00015695443,0.0007064403],"domain_scores_gemma":[0.99865633,0.00012281141,0.00027778707,0.00041279744,0.000034299363,0.0004959957],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005107833,0.00037335238,0.0005433989,0.00005582695,0.0011675578,0.0001549875,0.0011362876,0.00015858984,0.0023443156],"category_scores_gemma":[0.00004752504,0.0002719499,0.00018254982,0.0002416842,0.0006385036,0.00033723962,0.0016683352,0.0010115308,0.0009679908],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002511626,0.00017931129,0.0013622887,0.000008126167,0.00008756216,0.000026639545,0.0026422667,0.00076379266,0.8662869,0.000026975591,0.12825304,0.000111981346],"study_design_scores_gemma":[0.00905444,0.0011543941,0.0745569,0.00011601654,0.00077189016,0.004577999,0.002606737,0.0006349957,0.068328,0.0031520945,0.8323791,0.002667431],"about_ca_topic_score_codex":0.0002551661,"about_ca_topic_score_gemma":0.000653338,"teacher_disagreement_score":0.79795885,"about_ca_system_score_codex":0.00010506176,"about_ca_system_score_gemma":0.000030409446,"threshold_uncertainty_score":0.9999733},"labels":[],"label_agreement":null},{"id":"W3043135777","doi":"10.1038/s41396-020-0720-5","title":"Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":297,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; National Postdoctoral Program for Innovative Talents; Special Fund for Agro-scientific Research in the Public Interest; Fundamental Research Funds for the Central Universities; Natural Science Foundation of Jiangsu Province; Government of Jiangsu Province; Chinese Academy of Sciences; Ministry of Education of the People's Republic of China; Institute of Genetics; National Natural Science Foundation of China","keywords":"Biology; Fusarium oxysporum; Fusarium wilt; Fusarium; Microbiome; Soil microbiology; Soil water; Wilt disease; Agronomy; Botany; Ecology","score_opus":0.014068415409726226,"score_gpt":0.22753010987309963,"score_spread":0.2134616944633734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3043135777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943086,0.00008713045,0.0016373163,0.0024329762,0.00005653081,0.00008250663,0.0013391558,0.0000072094404,0.00004856943],"genre_scores_gemma":[0.997582,0.0000499299,0.00003589189,0.0018552467,0.00031852335,0.000004130269,0.00013667328,0.000007176906,0.0000104179035],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99919164,0.00009181816,0.00015097001,0.00016428379,0.00020305319,0.00019821613],"domain_scores_gemma":[0.9993909,0.000043735905,0.00012223062,0.00015138685,0.000061832245,0.00022988488],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000115370654,0.00012163983,0.00011652599,0.000013540615,0.00012902467,0.000029343064,0.00025588248,0.0000398483,0.000070770715],"category_scores_gemma":[0.00014192778,0.00006231139,0.00008372385,0.000035151654,0.000050855873,0.000004309743,0.00006296729,0.00018322216,0.0000040152163],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026809515,0.00029637554,0.2577851,0.00007189901,0.00009915418,0.0002042065,0.000081740916,0.013123492,0.7222273,0.000017915316,0.002374439,0.0010374619],"study_design_scores_gemma":[0.0040282505,0.005446399,0.8025095,0.00021836144,0.00050487777,0.00015858798,0.00034319732,0.011581373,0.16905628,0.000065214765,0.005279042,0.00080894213],"about_ca_topic_score_codex":0.0000025320378,"about_ca_topic_score_gemma":0.000002163307,"teacher_disagreement_score":0.553171,"about_ca_system_score_codex":0.0000051608363,"about_ca_system_score_gemma":0.000101933896,"threshold_uncertainty_score":0.25409847},"labels":[],"label_agreement":null},{"id":"W3044875548","doi":"10.1038/s41396-020-0727-y","title":"Multi-omic meta-analysis identifies functional signatures of airway microbiome in chronic obstructive pulmonary disease","year":2020,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Medical Science and Technology Foundation of Guangdong Province; National Natural Science Foundation of China","keywords":"Microbiome; Transcriptome; Metagenomics; COPD; Metabolome; Biology; Computational biology; Metabolomics; Fusobacteria; Bioinformatics; Genetics; Gene; Medicine; Gene expression; Internal medicine; 16S ribosomal RNA","score_opus":0.05443636966060513,"score_gpt":0.3258184633096387,"score_spread":0.2713820936490336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3044875548","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003124142,0.998148,0.00027084898,0.0002677839,0.0002127353,0.00033849585,0.00043577133,0.000003532869,0.000010408796],"genre_scores_gemma":[0.006623566,0.99131984,0.00011237173,0.00010605735,0.0004812498,0.000023626486,0.00045123414,0.00004113308,0.0008409303],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.99765486,0.00053402566,0.000878993,0.00043501478,0.00018507068,0.0003120434],"domain_scores_gemma":[0.99842596,0.000047760546,0.0008412242,0.00041793962,0.00010740001,0.00015973317],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044779922,0.00041304386,0.0018153744,0.0003138804,0.00014809838,0.000046980807,0.0005722437,0.00028444754,0.00029536517],"category_scores_gemma":[0.000040409792,0.00025236086,0.0031710796,0.00048226747,0.00016713205,0.0000069621915,0.00020446721,0.00080831535,0.00001708861],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000628459,0.00097597553,0.00007190729,0.02136411,0.50848025,0.0004952584,0.00047461037,0.003987732,0.35355544,0.00006246672,0.016346248,0.09355756],"study_design_scores_gemma":[0.00040325234,0.00009716504,0.0015832401,0.00034638034,0.21941589,0.00032465984,0.000058660284,0.000036337264,0.00046789978,0.000062620726,0.77654594,0.0006579296],"about_ca_topic_score_codex":0.000018875586,"about_ca_topic_score_gemma":0.000058528167,"teacher_disagreement_score":0.7601997,"about_ca_system_score_codex":0.00016192082,"about_ca_system_score_gemma":0.001229958,"threshold_uncertainty_score":0.99999285},"labels":[],"label_agreement":null},{"id":"W3047182147","doi":"10.1038/s41396-020-0725-0","title":"Anoxygenic photosynthesis and iron–sulfur metabolic potential of <i>Chlorobia</i> populations from seasonally anoxic Boreal Shield lakes","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; York University; University of Waterloo","funders":"Soehngen Institute of Anaerobic Microbiology","keywords":"Anoxygenic photosynthesis; Phototroph; Biology; Metagenomics; Anoxic waters; Chemocline; Ecology; Biogeochemistry; Candidatus; Sulfur cycle; Sulfur; Photosynthesis; Botany; Genome; Bacteria; Chemistry; Genetics","score_opus":0.017087803620733085,"score_gpt":0.2152003124477498,"score_spread":0.1981125088270167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047182147","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99387515,0.00023916173,0.00017333704,0.004739529,0.00011295875,0.000083239705,0.000056689503,0.000011088006,0.0007088444],"genre_scores_gemma":[0.9974517,0.0002173185,0.00045294917,0.0016672328,0.00014963491,0.000001419366,0.000013002571,0.000009825761,0.000036876707],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998934,0.00036430723,0.00024643063,0.00013159566,0.00012689021,0.00019680304],"domain_scores_gemma":[0.9993964,0.00012187587,0.00017512929,0.00017746945,0.000008508586,0.000120633325],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024328176,0.00012115968,0.00022883143,0.000015529908,0.00039482038,0.000024167332,0.00043077848,0.000083378356,0.0065924535],"category_scores_gemma":[0.000050026723,0.000088291185,0.00009794533,0.000115164155,0.000279516,0.00015141763,0.00024289142,0.0004258532,0.000053903386],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021028721,0.0001107696,0.020830538,0.000005161665,0.00010588081,0.000009000263,0.0027735305,0.0015129116,0.9629533,0.00016256666,0.0088442825,0.0024817507],"study_design_scores_gemma":[0.00074084074,0.00021277602,0.96673405,0.0000138386185,0.0003170333,0.00013673725,0.0005778853,0.0011051937,0.017427536,0.008721771,0.003724592,0.00028775376],"about_ca_topic_score_codex":0.0003583129,"about_ca_topic_score_gemma":0.0011191688,"teacher_disagreement_score":0.9459035,"about_ca_system_score_codex":0.000012877991,"about_ca_system_score_gemma":0.000020094014,"threshold_uncertainty_score":0.9943157},"labels":[],"label_agreement":null},{"id":"W3047434250","doi":"10.1038/s41396-020-0732-1","title":"Fungal communities decline with urbanization—more in air than in soil","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Norges Forskningsråd; Jane ja Aatos Erkon Säätiö; Academy of Finland","keywords":"Biology; Urbanization; Biodiversity; Ecosystem; Ecology; Habitat; Bioindicator; Ecosystem services; Abundance (ecology); Urban ecosystem; Species richness; Generalist and specialist species; Fungal Diversity; Urban ecology; Disturbance (geology)","score_opus":0.025010275745225696,"score_gpt":0.2077872206556879,"score_spread":0.1827769449104622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047434250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94211006,0.00008335281,0.0000033858862,0.057236742,0.000036696423,0.000049405946,0.0000036655001,0.000010564572,0.0004661204],"genre_scores_gemma":[0.9945967,0.000042235824,0.00002052579,0.0049855476,0.00028009433,0.0000018003374,0.00000576697,7.221605e-7,0.00006660663],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993624,0.0001520514,0.00015973278,0.000053326916,0.000110851186,0.00016165241],"domain_scores_gemma":[0.9996815,0.00014179543,0.00006242051,0.000024818584,0.000031501917,0.000057975005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024558333,0.00006901563,0.00011558341,0.000008573931,0.00014867441,0.000026308942,0.00030298918,0.000042276097,0.00027802165],"category_scores_gemma":[0.000025138686,0.000019125273,0.000023963497,0.0002804469,0.000064332075,0.00009039647,0.000076876655,0.00039423356,0.0000125295355],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011377561,0.00006791032,0.98983616,0.0000021636472,0.000009250359,0.00003094169,0.0045340285,0.00066859263,0.0019031329,0.00021836255,0.0005502083,0.0020655012],"study_design_scores_gemma":[0.00027469426,0.000283635,0.9903858,0.000013595405,0.0000037898094,0.00007504169,0.006175523,0.0006087617,0.00010513255,0.00034989018,0.0016517654,0.0000724174],"about_ca_topic_score_codex":0.00040934657,"about_ca_topic_score_gemma":0.015741222,"teacher_disagreement_score":0.052486636,"about_ca_system_score_codex":0.000016710042,"about_ca_system_score_gemma":0.000015027553,"threshold_uncertainty_score":0.87839705},"labels":[],"label_agreement":null},{"id":"W3047471226","doi":"10.1038/s41396-020-0731-2","title":"Lichen-like association of <i>Chlamydomonas reinhardtii</i> and <i>Aspergillus nidulans</i> protects algal cells from bacteria","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Biocrusts and Microbial Ecology","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Deutsche Forschungsgemeinschaft","keywords":"Aspergillus nidulans; Biology; Chlamydomonas reinhardtii; Fungus; Mycelium; Algae; Microbiology; Bacteria; Chlorophyta; Botany; Gene; Biochemistry; Genetics","score_opus":0.00876693771585155,"score_gpt":0.15970493686177573,"score_spread":0.15093799914592418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047471226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9774759,0.00014565207,0.0000067442484,0.021773124,0.00023486535,0.00014258715,0.0000694844,0.000014369917,0.00013729684],"genre_scores_gemma":[0.9945752,0.00020327914,0.000087241904,0.0041207955,0.0007708799,0.000001884095,0.000010218469,0.0000013623334,0.00022914598],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99912393,0.0001517401,0.00024213763,0.00014031812,0.00014024817,0.00020163467],"domain_scores_gemma":[0.99939084,0.00011859205,0.00028545407,0.000030482304,0.00006763427,0.00010702258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027931976,0.00010409682,0.00019984534,0.0000038051583,0.00019100987,0.00006768632,0.0002130792,0.00012490805,0.00054479163],"category_scores_gemma":[0.00003700403,0.000035195448,0.0000744308,0.00009809454,0.000045990546,0.0000758162,0.00007787581,0.00028468354,0.000020433621],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047976326,0.000019908764,0.00049192243,0.0000023790974,0.000031661442,0.0000031702175,0.00023579643,0.000003068272,0.9806964,0.0000064009864,0.013027441,0.005433909],"study_design_scores_gemma":[0.0012019662,0.0010444222,0.12097072,0.00004741793,0.00011753422,0.0000692554,0.00040416213,0.000117443065,0.35416305,0.00063370116,0.52082324,0.00040707973],"about_ca_topic_score_codex":0.0002047573,"about_ca_topic_score_gemma":0.00018339668,"teacher_disagreement_score":0.6265333,"about_ca_system_score_codex":0.000024460693,"about_ca_system_score_gemma":0.000014695051,"threshold_uncertainty_score":0.5965086},"labels":[],"label_agreement":null},{"id":"W3048058741","doi":"10.1038/s41396-020-0733-0","title":"A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; McGill Genome Centre; Université de Sherbrooke; Université de Montréal; Concordia University","funders":"National Bioscience Database Center; Natural Sciences and Engineering Research Council of Canada; Groupe de recherche interuniversitaire en limnologie; Fonds Québécois de la Recherche sur la Nature et les Technologies; Genome Canada","keywords":"Ecosystem; Ecology; Watershed; Biogeochemical cycle; Ecosystem health; Land use; Ecosystem services; Biodiversity; Geography; Biology","score_opus":0.03386633334900501,"score_gpt":0.2622793685303401,"score_spread":0.2284130351813351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048058741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997713,0.0000051319275,0.0000892044,0.001095155,0.0000599692,0.00007395362,0.00005352659,0.0000033269766,0.0009066834],"genre_scores_gemma":[0.9987667,0.000035066576,0.0002380268,0.00082807854,0.00006442742,8.4070655e-7,0.000009772718,0.0000048986685,0.00005215693],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987042,0.0007801942,0.0002258549,0.00004478774,0.000108368935,0.00013662153],"domain_scores_gemma":[0.9992004,0.00035759958,0.00021637554,0.00016182635,0.000015522332,0.000048288184],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00040480398,0.000076482655,0.00020930564,0.000013050692,0.00022040363,0.000012644567,0.00040512157,0.000049470425,0.010528825],"category_scores_gemma":[0.000021270474,0.000050661507,0.00007301108,0.000057774992,0.00025524944,0.000089822846,0.00022631136,0.00045589096,0.000018968722],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007824302,0.00062440656,0.16803847,0.00003550253,0.00017113413,0.000007475242,0.04889521,0.0052737147,0.752503,0.00029370593,0.023178978,0.00019599008],"study_design_scores_gemma":[0.0027426998,0.003890912,0.9543975,0.00013947085,0.00013767194,0.00011667804,0.009958363,0.001809759,0.009697235,0.0032307606,0.013531402,0.00034752025],"about_ca_topic_score_codex":0.000119645534,"about_ca_topic_score_gemma":0.0007917271,"teacher_disagreement_score":0.7863591,"about_ca_system_score_codex":0.000021928108,"about_ca_system_score_gemma":0.000017420653,"threshold_uncertainty_score":0.9903757},"labels":[],"label_agreement":null},{"id":"W3048306807","doi":"10.1038/s41396-020-0728-x","title":"Unique inducible filamentous motility identified in pathogenic <i>Bacillus cereus</i> group species","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Food and Agriculture; Canadian Institutes of Health Research; Agricultural Research Service; Killam Trusts; Government of Canada; U.S. Department of Agriculture","keywords":"Biology; Microbiology; Bacillus cereus; Virulence; Motility; Cereus; Biofilm; Flagellum; Bacteria; Swarming motility; Bacillus (shape); Quorum sensing; Secretion; Campylobacter jejuni; Gene; Cell biology; Biochemistry; Genetics","score_opus":0.0335895501983999,"score_gpt":0.25057692538108167,"score_spread":0.21698737518268177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048306807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944424,0.00063097966,0.0008550048,0.0019820624,0.00024916788,0.00018385828,0.000031880667,0.000007236316,0.0016173853],"genre_scores_gemma":[0.99684334,0.00083703245,0.00008007588,0.00076048926,0.0007750088,0.0000060129046,0.000021430053,0.000018512432,0.0006581243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99850607,0.00026084948,0.00032627728,0.0002646662,0.0002686082,0.00037350878],"domain_scores_gemma":[0.9993047,0.000019606703,0.00010096524,0.00030364108,0.000083517014,0.0001875369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008560098,0.00015059103,0.00018188203,0.000033294637,0.00016582404,0.00013755196,0.0005049846,0.00013185987,0.0003036379],"category_scores_gemma":[0.00019253534,0.0001074461,0.00013013557,0.00018693494,0.000110244575,0.000009773446,0.00023473034,0.00048088745,0.00003107409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017523713,0.000047762107,0.0008800277,0.000011610466,0.000030351615,0.000022241611,0.00027530978,0.000029285417,0.9924943,0.00004658764,0.0034441736,0.0025431085],"study_design_scores_gemma":[0.0049925144,0.0016996742,0.13538729,0.00007305628,0.000055024906,0.0004192499,0.0011744753,0.00041615515,0.53269625,0.0024174082,0.31983015,0.0008387559],"about_ca_topic_score_codex":0.000026685499,"about_ca_topic_score_gemma":0.00008009264,"teacher_disagreement_score":0.45979807,"about_ca_system_score_codex":0.000036277914,"about_ca_system_score_gemma":0.000113831265,"threshold_uncertainty_score":0.4381525},"labels":[],"label_agreement":null},{"id":"W3081913397","doi":"10.1038/s41396-020-00758-0","title":"A 500-year tale of co-evolution, adaptation, and virulence: <i>Helicobacter pylori</i> in the Americas","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Cancer Institute; Medical Research Council; Svenska Sällskapet för Medicinsk Forskning; Consejo Nacional de Ciencia y Tecnología; Health and Care Research Wales","keywords":"Biology; Genetics; Virulence; Helicobacter pylori; Genome; Homo sapiens; Adaptation (eye); Gene; Evolutionary biology; Genetic variation; Host adaptation","score_opus":0.029237846860229795,"score_gpt":0.2740196222391967,"score_spread":0.2447817753789669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3081913397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9353888,0.000492657,0.0008003079,0.06259102,0.0000878723,0.00019810794,0.000008971666,0.000012938792,0.00041930247],"genre_scores_gemma":[0.9922813,0.0005097173,0.00024630857,0.0065909927,0.000317967,0.000007030931,0.000002120933,0.000012534146,0.000032013006],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998654,0.00023073824,0.00041641988,0.0001370872,0.0003183979,0.00024334739],"domain_scores_gemma":[0.9992413,0.00012091196,0.00021618624,0.0001642048,0.00015897061,0.00009841033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005417355,0.00013296577,0.00028365888,0.00006318952,0.00015045972,0.000021057924,0.0001892601,0.00005415654,0.000044031978],"category_scores_gemma":[0.00023170406,0.00007256036,0.000065118526,0.00029806947,0.0003725893,0.00010715775,0.00004656583,0.00070173194,0.000025499945],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001446094,0.00028578707,0.87932163,0.00007488682,0.0007560775,0.00014599909,0.07095266,0.00014491554,0.012242627,0.0003863852,0.030742448,0.0035004755],"study_design_scores_gemma":[0.0033794069,0.0014553221,0.9655188,0.000118813965,0.00029106232,0.0013539091,0.018242808,0.00044343254,0.00026398635,0.00031985802,0.00848641,0.00012620646],"about_ca_topic_score_codex":0.000031197615,"about_ca_topic_score_gemma":0.000009747876,"teacher_disagreement_score":0.08619714,"about_ca_system_score_codex":0.000038281647,"about_ca_system_score_gemma":0.00007247627,"threshold_uncertainty_score":0.30487153},"labels":[],"label_agreement":null},{"id":"W3085563783","doi":"10.1038/s41396-020-00770-4","title":"Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Horizon 2020 Framework Programme; Ministry of Education and Science of the Russian Federation; Ministerio de Economía y Competitividad; Russian Foundation for Basic Research; European Commission","keywords":"Biology; Flagellate; Gene; Transcriptome; Operon; Gene expression; Cell biology; Genetics; Ecology; Botany; Mutant","score_opus":0.01185994254538494,"score_gpt":0.1975793297791346,"score_spread":0.18571938723374964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3085563783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978987,0.000012806672,0.000075503085,0.0013522968,0.000086796295,0.000059262933,0.0000017385422,0.000007770581,0.0005051058],"genre_scores_gemma":[0.9989269,0.00007922133,0.00035640242,0.0004730315,0.00009490021,8.2245134e-7,0.0000016466258,0.000007959702,0.000059163354],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991823,0.00028401954,0.00019799049,0.00008504799,0.00008086307,0.00016976715],"domain_scores_gemma":[0.99956024,0.000047230136,0.00015187127,0.0001554649,0.0000069433872,0.00007826473],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016178364,0.000086151966,0.0001442945,0.000011354947,0.00027376568,0.000010001925,0.00044276397,0.00004974177,0.006510328],"category_scores_gemma":[0.000029915187,0.000057129702,0.00006195344,0.000071730676,0.00015334424,0.000088816356,0.00059024844,0.00041433828,0.00013154709],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013303188,0.000021458629,0.0044772695,0.0000063029784,0.000010710499,0.00001047828,0.0007570593,0.0005967434,0.9933424,0.0000013493459,0.0005179404,0.00012524873],"study_design_scores_gemma":[0.0005556768,0.0002661031,0.14155258,0.000018684874,0.00001955216,0.00034130673,0.000024711851,0.00011458935,0.8549443,0.0017818896,0.0002557383,0.00012485868],"about_ca_topic_score_codex":0.00005191913,"about_ca_topic_score_gemma":0.000020681426,"teacher_disagreement_score":0.1383981,"about_ca_system_score_codex":0.00002494397,"about_ca_system_score_gemma":0.000005409052,"threshold_uncertainty_score":0.9943979},"labels":[],"label_agreement":null},{"id":"W3087176413","doi":"10.1038/s41396-020-00753-5","title":"Experimental evolution reveals nitrate tolerance mechanisms in <i>Desulfovibrio vulgaris</i>","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Lawrence Berkeley National Laboratory; University of Oklahoma; Office of Science; National Natural Science Foundation of China; National Key Research and Development Program of China; U.S. Department of Energy","keywords":"Biology; Desulfovibrio vulgaris; Nitrate; Geomicrobiology; Evolutionary biology; Computational biology; Ecology; Bacteria; Genetics; Microbial ecology; Environmental biotechnology","score_opus":0.010231894089706716,"score_gpt":0.2370922957063313,"score_spread":0.2268604016166246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3087176413","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9360629,0.0016624446,0.05854427,0.002457077,0.00024246711,0.00013382528,0.0000071405793,0.000010319789,0.0008795892],"genre_scores_gemma":[0.9960855,0.00009973912,0.0009953228,0.0021199747,0.00036826843,0.000004732103,0.000008310482,0.000014729873,0.00030337536],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908173,0.00012180029,0.0002520989,0.00016920592,0.00015637605,0.0002188178],"domain_scores_gemma":[0.9995982,0.0000051116667,0.000104571496,0.00014468415,0.000039882736,0.000107549764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023679703,0.00011611208,0.000110965244,0.000018888439,0.00012504267,0.00003949355,0.0002434407,0.00008254129,0.000041044863],"category_scores_gemma":[0.00003317091,0.00009140904,0.000076561584,0.000098830875,0.000046214274,0.000005581619,0.000069182424,0.00022818359,0.000024446934],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000799477,0.000031016858,0.00023991943,0.000002566525,0.000011810972,0.000004249321,0.00019300882,0.00257823,0.99304247,0.00059242727,0.0031142745,0.00011006971],"study_design_scores_gemma":[0.0052874372,0.001809409,0.01805716,0.00008205932,0.000054397216,0.0009202564,0.0027868517,0.02580065,0.9201676,0.011186361,0.012821686,0.0010260842],"about_ca_topic_score_codex":0.000006558439,"about_ca_topic_score_gemma":0.000010868183,"teacher_disagreement_score":0.07287483,"about_ca_system_score_codex":0.000033650205,"about_ca_system_score_gemma":0.00007846362,"threshold_uncertainty_score":0.37275523},"labels":[],"label_agreement":null},{"id":"W3087398517","doi":"10.1038/s41396-020-00774-0","title":"Quorum sensing controls persistence, resuscitation, and virulence of <i>Legionella</i> subpopulations in biofilms","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Novartis Stiftung für Medizinisch-Biologische Forschung; Deutsche Forschungsgemeinschaft; McGill University; Novartis Foundation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Legionella pneumophila; Biology; Biofilm; Legionella; Virulence; Quorum sensing; Microbiology; Pathogen; Pseudomonas aeruginosa; Legionnaires' disease; Bacteria; Multidrug tolerance; Genetics; Gene","score_opus":0.03255818185666919,"score_gpt":0.26386032493477535,"score_spread":0.23130214307810615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3087398517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9852632,0.0006873662,0.0005494733,0.013072463,0.000044388275,0.00008297619,0.000004246464,0.0000020148261,0.0002938691],"genre_scores_gemma":[0.99837005,0.0004860869,0.00029702764,0.00060885795,0.00017261202,5.10251e-7,0.0000035328571,0.000006352865,0.000054948607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992825,0.00010321982,0.00020057247,0.00011527608,0.00014669473,0.0001517622],"domain_scores_gemma":[0.9996115,0.000030513791,0.00009245038,0.00009395858,0.00009377028,0.00007783521],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032505504,0.00006467835,0.00009788245,0.00003459164,0.00013111622,0.0000311479,0.00012417552,0.00004729284,0.0000028556826],"category_scores_gemma":[0.00013964246,0.000045885008,0.000045550412,0.00013576825,0.0001387986,0.0000070445276,0.000051751867,0.00016314753,0.0000015583269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117727424,0.00001292193,0.010883043,0.000010573568,0.000023044653,0.0000063903635,0.00060376513,0.00033878806,0.98556626,0.00010579078,0.0015643004,0.0007674198],"study_design_scores_gemma":[0.012534157,0.0026477235,0.18529834,0.0004897854,0.00020859302,0.00150936,0.019560467,0.030587416,0.7006896,0.0047561955,0.040252216,0.0014661052],"about_ca_topic_score_codex":0.000025692261,"about_ca_topic_score_gemma":0.000023870363,"teacher_disagreement_score":0.28487659,"about_ca_system_score_codex":0.0000058174933,"about_ca_system_score_gemma":0.00006628912,"threshold_uncertainty_score":0.18711363},"labels":[],"label_agreement":null},{"id":"W3092954960","doi":"10.1038/s41396-020-00757-1","title":"Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Science Support Program, Lamont-Doherty Earth Observatory; Biological and Environmental Research; Office of Science; Lamont-Doherty Earth Observatory, Columbia University; Directorate for Geosciences; Division of Ocean Sciences; Joint Genome Institute; Canadian Institute for Advanced Research; U.S. Department of Energy; Gordon and Betty Moore Foundation; Simons Foundation; National Science Foundation","keywords":"Deltaproteobacteria; Biology; Anaerobic oxidation of methane; Petroleum seep; 16S ribosomal RNA; Archaea; Microbiology; Ecology; Bacteria; Gammaproteobacteria; Methane; Genetics","score_opus":0.06984525965273712,"score_gpt":0.2686893860228826,"score_spread":0.19884412637014548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3092954960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98719466,0.00014698131,0.009633831,0.0023639647,0.000057714908,0.00020717178,0.0000029291027,0.000018030767,0.00037470984],"genre_scores_gemma":[0.996642,0.000054335393,0.002394601,0.0005122409,0.00007383056,0.0000044392623,0.000023133645,0.000016096486,0.00027932093],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.99805087,0.00047577926,0.00045844255,0.00027073806,0.00044661335,0.0002975561],"domain_scores_gemma":[0.999058,0.00006513627,0.0003570994,0.00020720014,0.000012423881,0.00030011515],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000648878,0.00018851977,0.00030446696,0.00007968607,0.00015248424,0.00007697462,0.00028980584,0.00007941636,0.0025732245],"category_scores_gemma":[0.00003539828,0.00011610909,0.00011389454,0.0012370762,0.00013931161,0.00028240867,0.00007652441,0.00044421924,0.00015089719],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006170546,0.00017667406,0.16636916,0.0000069895973,0.00104662,0.00011944495,0.008104765,0.460604,0.3600027,0.0001237081,0.0013955889,0.0014332954],"study_design_scores_gemma":[0.011436368,0.0022474558,0.6316231,0.00014975294,0.0042010928,0.00075043703,0.0062083276,0.099095136,0.23645863,0.0032783237,0.0020269887,0.002524379],"about_ca_topic_score_codex":0.0002340419,"about_ca_topic_score_gemma":0.0001244039,"teacher_disagreement_score":0.46525395,"about_ca_system_score_codex":0.00014788407,"about_ca_system_score_gemma":0.000028238728,"threshold_uncertainty_score":0.9983386},"labels":[],"label_agreement":null},{"id":"W3093156732","doi":"10.1038/s41396-020-00809-6","title":"Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Universität Wien; Natural Sciences and Engineering Research Council of Canada; EQUIPMENT BOKU VIENNA INSTITUTE OF BIOTECHNOLOGY; Universität für Bodenkultur Wien; Austrian Science Fund; Agence Nationale de la Recherche; Oxford Nanopore Technologies","keywords":"Biology; Nitrite; Strain (injury); Candidatus; Mixotroph; Heterotroph; Bacteria; Botany; Microbiology; Nitrogenase; Archaea; Biochemistry; 16S ribosomal RNA; Nitrogen fixation; Genetics; Ecology","score_opus":0.013649550737528444,"score_gpt":0.20660603916955078,"score_spread":0.19295648843202234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093156732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980161,0.00021088742,0.000710246,0.0006670317,0.000015101239,0.00004624368,0.0000042994902,0.0000049084324,0.0003251682],"genre_scores_gemma":[0.9971331,0.000037042428,0.0024772075,0.0001850942,0.000032765165,5.148182e-7,0.0000018691376,0.0000067785277,0.00012563317],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99933195,0.00003110451,0.00020635712,0.00010765619,0.00017146187,0.00015145348],"domain_scores_gemma":[0.999632,0.000020649373,0.0001671867,0.00007718392,0.0000038911476,0.00009907967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014849198,0.000086472755,0.00016295581,0.000023224233,0.000109015484,0.000029924946,0.00016673864,0.00002071588,0.00042461825],"category_scores_gemma":[0.0000058445894,0.00005366977,0.00009295766,0.00024455177,0.00007521475,0.000053458476,0.00009858491,0.00011119587,0.000018256327],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015724701,0.00004151976,0.048025023,0.0000017221752,0.00015183687,0.0000026758794,0.00095632416,0.0013160199,0.948836,0.000001527932,0.0002478795,0.00040369635],"study_design_scores_gemma":[0.0034560596,0.00066421914,0.7084949,0.0000084663625,0.004537717,0.0001159184,0.001203304,0.06653092,0.21303073,0.00031751374,0.0011301525,0.000510123],"about_ca_topic_score_codex":0.000071262584,"about_ca_topic_score_gemma":0.0000042243,"teacher_disagreement_score":0.73580533,"about_ca_system_score_codex":0.000028757873,"about_ca_system_score_gemma":0.0000035493201,"threshold_uncertainty_score":0.4649272},"labels":[],"label_agreement":null},{"id":"W3093813477","doi":"10.1038/s41396-020-00805-w","title":"Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13C and 2H metabolic network mapping","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":135,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Graduate Education; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Division of Chemical, Bioengineering, Environmental, and Transport Systems; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Anammox; Biology; Metabolic pathway; Metabolic flux analysis; Microbial metabolism; Metabolic network; Biochemistry; Autotroph; Metabolism; Citric acid cycle; Carbon fixation; Stable-isotope probing; Population; Candidatus; Bacteria; Microorganism; Chemistry; Photosynthesis; Denitrification; Nitrogen","score_opus":0.010307967922194388,"score_gpt":0.19112637973755822,"score_spread":0.18081841181536384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093813477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951733,0.0024961748,0.000030589894,0.0020127848,0.00007713197,0.00013060597,0.0000063778552,0.000011497405,0.00006157712],"genre_scores_gemma":[0.99536616,0.00074595114,0.0032027494,0.0003318287,0.00021954371,0.000002503076,0.0000014581038,0.000016745591,0.00011304422],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99869424,0.00024545102,0.00031646443,0.0002023585,0.00022943302,0.0003120473],"domain_scores_gemma":[0.99946356,0.000021876886,0.00016385027,0.00013114267,0.0000058370388,0.00021376243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040103114,0.00017086334,0.0003248734,0.00003032619,0.0001575824,0.000062164014,0.00021101593,0.000050196566,0.00030036745],"category_scores_gemma":[0.000008952448,0.00011100008,0.000051657767,0.00023994163,0.0001656057,0.00028149845,0.00014708615,0.0002453219,0.0000066949488],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002662474,0.00011595365,0.040283203,0.000020913254,0.0001876199,0.000106765925,0.004458817,0.0015089384,0.94431657,0.00005155976,0.0018719024,0.0068115024],"study_design_scores_gemma":[0.0044291914,0.00045345046,0.94218206,0.000076215525,0.00039792882,0.001043942,0.00043458192,0.010011325,0.017054483,0.0030574722,0.020201998,0.00065732177],"about_ca_topic_score_codex":0.000105542545,"about_ca_topic_score_gemma":0.00001587639,"teacher_disagreement_score":0.92726207,"about_ca_system_score_codex":0.000018242483,"about_ca_system_score_gemma":0.000009063188,"threshold_uncertainty_score":0.4526452},"labels":[],"label_agreement":null},{"id":"W3096131779","doi":"10.1038/s41396-020-00820-x","title":"Genomics and metatranscriptomics of biogeochemical cycling and degradation of lignin-derived aromatic compounds in thermal swamp sediment","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Resources Canada; Genome British Columbia; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Government of Canada","keywords":"Biogeochemical cycle; Biology; Swamp; Lignin; Sediment; Environmental chemistry; Degradation (telecommunications); Cycling; Geomicrobiology; Microbial biodegradation; Ecology; Botany; Microbial ecology; Environmental biotechnology; Bacteria; Paleontology; Chemistry","score_opus":0.018989037568854557,"score_gpt":0.21635293482887677,"score_spread":0.1973638972600222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096131779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99877113,0.00010169717,0.0000482693,0.00092290645,0.000020904254,0.000056031044,0.000002819355,0.0000014840366,0.000074742835],"genre_scores_gemma":[0.99859875,0.00010728182,0.0010418952,0.00023417221,0.000011231571,3.4818885e-7,0.000002447596,0.000002912747,9.643943e-7],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946696,0.00014686174,0.00021235344,0.00005205549,0.00004264173,0.00007913683],"domain_scores_gemma":[0.99969757,0.000097011376,0.00011656788,0.00005208105,0.000002746121,0.000034042903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028258198,0.000053721942,0.00014877977,0.000012596282,0.00006405337,0.0000046698087,0.00012403175,0.00003758079,0.000051364048],"category_scores_gemma":[0.000012226488,0.000039534432,0.00002227338,0.000047142716,0.00023391143,0.00004821941,0.000080364385,0.00020552697,0.0000010761452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040406685,0.000023635539,0.0075942343,0.00000724661,0.000016749966,3.9070912e-7,0.0032543296,0.00025548015,0.98849946,0.00000960332,0.00005063534,0.000247844],"study_design_scores_gemma":[0.001329851,0.0003315845,0.1278331,0.00003225879,0.00009140401,0.00008074357,0.0011272097,0.0046306388,0.85642695,0.007839711,0.000120222576,0.00015634598],"about_ca_topic_score_codex":0.000044172877,"about_ca_topic_score_gemma":0.000032291373,"teacher_disagreement_score":0.13207251,"about_ca_system_score_codex":0.000016713288,"about_ca_system_score_gemma":0.000008143305,"threshold_uncertainty_score":0.16121674},"labels":[],"label_agreement":null},{"id":"W3096961990","doi":"10.1038/s41396-020-00814-9","title":"Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere","year":2020,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Microplastics and Plastic Pollution","field":"Environmental Science","cited_by":270,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Dalhousie University; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Universitat de les Illes Balears; University of Warwick; Association of Commonwealth Universities","keywords":"Biology; Metadata; Ecology; Ecosystem; Microbial ecology; Biofilm; Diversity (politics); Metagenomics; World Wide Web; Computer science; Bacteria","score_opus":0.11608307105055406,"score_gpt":0.28814590896237957,"score_spread":0.17206283791182553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096961990","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00018790492,0.99101573,0.0024558504,0.001651789,0.00052085426,0.00057911867,0.0023056224,0.000010210779,0.0012729121],"genre_scores_gemma":[0.010821256,0.98738194,0.00027911903,0.00031618774,0.00029523746,0.000008758574,0.000004252432,0.00002206087,0.0008711722],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971164,0.0007932189,0.00066340674,0.00025392533,0.0008753868,0.00029768632],"domain_scores_gemma":[0.9973041,0.00062372815,0.0012292404,0.0006903987,0.000017641361,0.00013490197],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009769214,0.00034479224,0.0015408113,0.000020388108,0.000989288,0.00008953999,0.0026349504,0.00013814394,0.006892552],"category_scores_gemma":[0.00042149663,0.00011388266,0.0027244256,0.0011916708,0.00033151024,0.0000609343,0.0023680192,0.0007955468,0.00012692355],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003107975,0.00040906502,0.0011454747,0.002126351,0.51062095,0.00017093614,0.0024074218,0.0090444,0.000006700616,0.0019559178,0.2935803,0.17822167],"study_design_scores_gemma":[0.0001399392,0.00011173865,0.0005328171,0.00014972815,0.36305147,0.0004500076,0.000060512222,0.00009448817,5.162848e-7,0.0010072478,0.6341916,0.00020993921],"about_ca_topic_score_codex":0.00015032924,"about_ca_topic_score_gemma":0.0010865097,"teacher_disagreement_score":0.34061128,"about_ca_system_score_codex":0.00028420743,"about_ca_system_score_gemma":0.00012888125,"threshold_uncertainty_score":0.9940153},"labels":[],"label_agreement":null},{"id":"W3096971890","doi":"10.1038/s41396-020-00821-w","title":"Skin fungal assemblages of bats vary based on susceptibility to white-nose syndrome","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Geological Survey; Natural Sciences and Engineering Research Council of Canada; U.S. Fish and Wildlife Service; U.S. Department of the Interior","keywords":"Biology; Host (biology); Ecology; Colonization; Zoology","score_opus":0.03011496438488023,"score_gpt":0.23231257940908612,"score_spread":0.20219761502420588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096971890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93829286,0.000046582667,0.0000072285884,0.06079962,0.00015786271,0.00009916619,0.000014766883,0.00001651346,0.0005653985],"genre_scores_gemma":[0.9948184,0.000013794186,0.000041528416,0.0048102196,0.00023709517,0.0000026873797,0.0000021478977,6.228921e-7,0.000073504096],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99898,0.00026242642,0.0002225975,0.00016732821,0.0001344049,0.00023328238],"domain_scores_gemma":[0.9992739,0.00039443024,0.00010455555,0.000051466122,0.000054187258,0.000121444275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060676446,0.00011273141,0.00022374876,0.000008398432,0.0003528717,0.000016383978,0.00034499416,0.00009218522,0.00083546975],"category_scores_gemma":[0.00018176666,0.000033023516,0.00011537298,0.00019302557,0.000111239315,0.000041435862,0.000087532724,0.0003206265,0.0000761006],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011715797,0.00067508937,0.7504577,0.000025307767,0.0002376364,0.00015998374,0.0016104332,0.00089064846,0.16844983,0.00012318956,0.05327276,0.022925833],"study_design_scores_gemma":[0.000122711,0.0017722878,0.995096,0.000011103985,0.000017827515,0.00004743836,0.00039427273,0.000067895206,0.0012928853,0.00017724694,0.0009122795,0.000088032764],"about_ca_topic_score_codex":0.00001081126,"about_ca_topic_score_gemma":0.00015897202,"teacher_disagreement_score":0.24463832,"about_ca_system_score_codex":0.000014320231,"about_ca_system_score_gemma":0.000010925799,"threshold_uncertainty_score":0.9147808},"labels":[],"label_agreement":null},{"id":"W3103058980","doi":"10.1038/s41396-020-00825-6","title":"Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":165,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Agouron Institute; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Biology; Thaumarchaeota; Nitrogen cycle; Biogeochemistry; Ecology; Geomicrobiology; Metagenomics; Anoxic waters; Proteobacteria; Ecosystem; Denitrification; Microbial ecology; Archaea; Environmental biotechnology; Nitrogen; Bacteria; Gene","score_opus":0.010197522726341382,"score_gpt":0.21034845126011437,"score_spread":0.20015092853377298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3103058980","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99307066,0.000029356013,0.00024277827,0.0057138694,0.00025904542,0.00008026229,0.000008415539,0.000021185779,0.0005744219],"genre_scores_gemma":[0.99719805,0.00011183821,0.0001224545,0.0022671248,0.00021527534,8.3447475e-7,0.0000039158363,0.000015448779,0.00006504757],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911416,0.00008669364,0.0002609732,0.00013111229,0.00014187185,0.0002652175],"domain_scores_gemma":[0.99965024,0.00002144148,0.0000997017,0.000089623725,0.0000054583425,0.00013355307],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00017911152,0.00010362215,0.00011061542,0.0000225424,0.00018219465,0.000087355606,0.0002996468,0.000041728308,0.0033742504],"category_scores_gemma":[0.000027876285,0.00007029075,0.0000897566,0.00016721385,0.00006148,0.00022720496,0.00013238734,0.00048031277,0.0012424514],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000461399,0.000028553195,0.0009552705,0.0000010603173,0.000018708946,0.000048456983,0.0009244937,0.0005618036,0.9924896,0.0000010547059,0.0043196473,0.00060525275],"study_design_scores_gemma":[0.005487914,0.0006448759,0.7299187,0.00013290509,0.000266598,0.0029342663,0.0033478648,0.022532545,0.119615324,0.0019815797,0.11163016,0.001507242],"about_ca_topic_score_codex":0.0001448956,"about_ca_topic_score_gemma":0.00003180308,"teacher_disagreement_score":0.87287426,"about_ca_system_score_codex":0.000096159376,"about_ca_system_score_gemma":0.000010720025,"threshold_uncertainty_score":0.9995352},"labels":[],"label_agreement":null},{"id":"W3117780117","doi":"10.1038/s41396-020-00856-z","title":"Morphological complexity affects the diversity of marine microbiomes","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal plant biology","field":"Earth and Planetary Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; Tula Foundation; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Hakai Institute; Tula Foundation","keywords":"Biology; Epibiont; Ecology; Host (biology); Phylogenetic diversity; Species richness; Microbial ecology; Crustose; Community; Community structure; Biodiversity; Holobiont; Algae; Habitat; Phylogenetic tree; Symbiosis","score_opus":0.04910418026402568,"score_gpt":0.20523811212826926,"score_spread":0.15613393186424357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3117780117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9767962,0.0000714309,0.000055858945,0.0121026775,0.00012216429,0.00005528716,0.00004315942,0.000007865804,0.010745332],"genre_scores_gemma":[0.9976866,0.00005932363,0.00008373909,0.0018081048,0.0001582463,2.6472183e-8,0.000014603356,5.744046e-7,0.00018875414],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994336,0.00015546502,0.000096870455,0.00006733003,0.00010729618,0.00013948744],"domain_scores_gemma":[0.9996099,0.00014834267,0.0000903359,0.00006953043,0.000016038504,0.00006587449],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002915431,0.000062598156,0.00011739249,0.000010668065,0.0003489613,0.00002001663,0.00043841166,0.000027525008,0.0050222618],"category_scores_gemma":[0.00002662918,0.000025791513,0.00006407551,0.00009020786,0.00023057967,0.00003855312,0.00021906663,0.0002525176,0.000059673366],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039014767,0.00002724031,0.8737139,0.000015052394,0.00009928228,0.00014760302,0.00071153964,0.00027761597,0.0016573805,0.00027203246,0.030331641,0.09235657],"study_design_scores_gemma":[0.00027274943,0.00039634743,0.9779815,0.000002937928,0.000028806815,0.00094549643,0.00025307864,0.00090713776,0.00025551853,0.0031642788,0.015708571,0.000083566745],"about_ca_topic_score_codex":0.0014355147,"about_ca_topic_score_gemma":0.00071132043,"teacher_disagreement_score":0.10426761,"about_ca_system_score_codex":8.9375453e-7,"about_ca_system_score_gemma":0.000013664924,"threshold_uncertainty_score":0.9958873},"labels":[],"label_agreement":null},{"id":"W3118572295","doi":"10.1038/s41396-020-00867-w","title":"Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Engineering and Physical Sciences Research Council; Department for International Development; Imperial College London; National Institute of General Medical Sciences; Medical Research Council; Royal Society; National Institutes of Health; Government of Canada; Wellcome Trust","keywords":"Biology; Locus (genetics); Recombination; Genetics; Population; Frequency-dependent selection; Evolutionary biology; Genome; Gene","score_opus":0.025118381719016068,"score_gpt":0.2948254535290908,"score_spread":0.2697070718100747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3118572295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924428,0.00005451629,0.0039039247,0.002784383,0.0004402259,0.00016680846,0.000017662971,0.000024224903,0.00016548105],"genre_scores_gemma":[0.998651,0.00006646847,0.00054796104,0.00019955737,0.0004607303,0.0000034567906,0.000014201877,0.0000092800665,0.000047339337],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99904555,0.00020287844,0.00027325333,0.00010110512,0.00023587156,0.00014136125],"domain_scores_gemma":[0.99949706,0.000060175425,0.00010048367,0.00007050767,0.00016127506,0.00011048238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002660906,0.00009816137,0.00014739418,0.00011105794,0.00038163422,0.00008689515,0.00003047473,0.00008826776,0.00023754584],"category_scores_gemma":[0.0001991492,0.00006226832,0.000070375536,0.00022885377,0.000033051794,0.00022170172,0.000007771103,0.00045757284,0.0000029832272],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014533149,0.00022869057,0.02959569,0.00004979094,0.00022327987,0.00004477504,0.0037531029,0.00036449856,0.93018675,0.0010393898,0.000075752105,0.03429294],"study_design_scores_gemma":[0.0026672096,0.00030145672,0.9679217,0.00003948772,0.00021837938,0.005271545,0.0009060126,0.0011450849,0.017283577,0.003652602,0.00045434284,0.00013861855],"about_ca_topic_score_codex":0.000032829896,"about_ca_topic_score_gemma":0.0001332553,"teacher_disagreement_score":0.938326,"about_ca_system_score_codex":0.00012691483,"about_ca_system_score_gemma":0.0001273879,"threshold_uncertainty_score":0.29352605},"labels":[],"label_agreement":null},{"id":"W3120810479","doi":"10.1038/s41396-020-00864-z","title":"Phosphorus deficiencies invoke optimal allocation of exoenzymes by ectomycorrhizas","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Resources Canada; Canadian Sport Centre Pacific; Ministry of Forests; University of British Columbia; Government of British Columbia; University of British Columbia, Okanagan Campus","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phosphomonoesterase; Phosphorus; Biology; Chemistry; Botany; Biochemistry; Phosphatase; Enzyme","score_opus":0.010024087511464668,"score_gpt":0.198665362689845,"score_spread":0.18864127517838034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3120810479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897061,0.004717653,0.00009481076,0.002586834,0.00035300307,0.00004331301,0.0002213064,0.000014049286,0.0022629476],"genre_scores_gemma":[0.9947479,0.0033008126,0.00012318758,0.00028563553,0.00019861583,0.000001965807,0.0001247852,7.408922e-7,0.0012163762],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991998,0.000095564836,0.00022362602,0.000097107026,0.00021331414,0.00017058464],"domain_scores_gemma":[0.9988015,0.0008039087,0.00013717181,0.000046807207,0.0001492858,0.00006132063],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024965053,0.000083026534,0.00011515263,0.0000073489173,0.00029698026,0.000086481254,0.00022807239,0.000043271877,0.003734948],"category_scores_gemma":[0.00016703326,0.00002676687,0.00010072379,0.00022789843,0.000012343214,0.00012191157,0.000041981235,0.00021064865,0.00009550838],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004818176,0.0001463427,0.012794222,0.0000034628488,0.00003741899,0.000012047548,0.0004450977,0.00018016915,0.8239824,0.0014398729,0.14800027,0.01291051],"study_design_scores_gemma":[0.00016449159,0.0005376519,0.020169,0.00016526334,0.00011785737,0.003573234,0.008619343,0.001504567,0.4617241,0.0025634698,0.5003996,0.00046143736],"about_ca_topic_score_codex":0.00021951503,"about_ca_topic_score_gemma":0.00002943554,"teacher_disagreement_score":0.36225832,"about_ca_system_score_codex":0.000016374363,"about_ca_system_score_gemma":0.00002619728,"threshold_uncertainty_score":0.99717575},"labels":[],"label_agreement":null},{"id":"W3125903257","doi":"10.1038/s41396-020-00889-4","title":"Mercury methylation by metabolically versatile and cosmopolitan marine bacteria","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Medical Research Council; Office of Science; University of Melbourne; National Health and Medical Research Council; Natural Sciences and Engineering Research Council of Canada; State Government of Victoria; Joint Genome Institute; U.S. Department of Energy","keywords":"Biology; Mercury (programming language); Methylmercury; Methylation; Bacteria; Marine bacteriophage; Anoxic waters; Gene; Microbial ecology; DNA methylation; Genetics; Ecology; Gene expression; Bioaccumulation","score_opus":0.011845951717894621,"score_gpt":0.2503395252742487,"score_spread":0.23849357355635406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3125903257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97990036,0.0003938159,0.00027687335,0.006759048,0.00017719512,0.000045179928,0.000009754344,0.000009277258,0.012428467],"genre_scores_gemma":[0.9931536,0.00067193346,0.00092960283,0.0011383903,0.000110522735,0.0000020503066,0.000007352059,0.000008222352,0.003978324],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999263,0.00012665709,0.00015811781,0.00008868824,0.00020972737,0.00015382156],"domain_scores_gemma":[0.99963737,0.000065905995,0.00007771414,0.00010112663,0.00001536113,0.00010250284],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003751787,0.00007787047,0.00011149097,0.000009706649,0.00028179647,0.000071565504,0.000079503465,0.000023565612,0.006884254],"category_scores_gemma":[0.00007266458,0.000050272924,0.000034467535,0.00009686322,0.00011585928,0.00018800003,0.00015162428,0.00014409792,0.00007970879],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038787162,0.00008561741,0.029742895,0.0000057058132,0.00020556626,0.00001481194,0.003619074,0.000023405557,0.5949274,0.00066713756,0.29079902,0.07987059],"study_design_scores_gemma":[0.0008535632,0.000068116045,0.6171193,0.00000934011,0.00016596094,0.0004563229,0.0014145557,0.00013725027,0.041828316,0.017457373,0.32021454,0.0002753275],"about_ca_topic_score_codex":0.00004069964,"about_ca_topic_score_gemma":0.000018731085,"teacher_disagreement_score":0.5873764,"about_ca_system_score_codex":0.00004513557,"about_ca_system_score_gemma":0.000011846025,"threshold_uncertainty_score":0.99402356},"labels":[],"label_agreement":null},{"id":"W3127659961","doi":"10.1038/s41396-021-00898-x","title":"Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Environmental Biology; Wisconsin Alumni Research Foundation; Division of Graduate Education; Natural Sciences and Engineering Research Council of Canada; Leibniz-Gemeinschaft; Office of Science; Government of Canada; Deutsche Forschungsgemeinschaft; National Science Foundation; Tanzania Commission for Science and Technology; Joint Genome Institute; U.S. Department of Energy","keywords":"Anoxic waters; Biogeochemical cycle; Biology; Metagenomics; Water column; Ecology; Freshwater ecosystem; Nutrient cycle; Context (archaeology); Microbial ecology; Archaea; Biodiversity; Surface water; Biogeochemistry; Ecosystem; Environmental science","score_opus":0.01440448076272673,"score_gpt":0.24266474477180405,"score_spread":0.2282602640090773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127659961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99267316,0.00026045408,0.000016919012,0.006485629,0.000061442435,0.000072435636,0.000013955083,0.0000018398457,0.00041418566],"genre_scores_gemma":[0.9979925,0.00016778748,0.00030168894,0.001415475,0.00006361835,0.0000022498577,0.000007121937,0.0000053237122,0.000044190292],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979905,0.0012552856,0.0003271377,0.00009661402,0.00009178641,0.00023868098],"domain_scores_gemma":[0.9991232,0.0004407426,0.00010873617,0.0002975578,0.0000072404955,0.000022510467],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010394882,0.00009307357,0.00018545362,0.000019434263,0.00021458589,0.000024721572,0.0007766079,0.00008593575,0.001547007],"category_scores_gemma":[0.000090183086,0.00004394199,0.00009630752,0.00015582869,0.00037925542,0.000051386392,0.00030292777,0.00090221287,0.00002960246],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058464608,0.00010764224,0.08029592,0.0000034538325,0.000030134477,0.000031645603,0.006022273,0.00093055033,0.90864056,0.00015516946,0.0034173417,0.00030680918],"study_design_scores_gemma":[0.0014395679,0.0001505386,0.7065565,0.000084914514,0.00011620405,0.0014596225,0.0068932427,0.0003889978,0.17413087,0.0643556,0.044032782,0.00039118686],"about_ca_topic_score_codex":0.000058147525,"about_ca_topic_score_gemma":0.050843403,"teacher_disagreement_score":0.7345097,"about_ca_system_score_codex":0.00003351648,"about_ca_system_score_gemma":0.000017840912,"threshold_uncertainty_score":0.9993657},"labels":[],"label_agreement":null},{"id":"W3128180079","doi":"10.1038/s41396-020-00836-3","title":"Bacterial microbiota similarity between predators and prey in a blue tit trophic network","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Fonds Québécois de la Recherche sur la Nature et les Technologies; Université du Québec à Montréal","keywords":"Trophic level; Biology; Gut flora; Ecology; Host (biology); Predation; Zoology","score_opus":0.01919672527985582,"score_gpt":0.2129778164862658,"score_spread":0.19378109120640996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3128180079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99498445,0.00018267025,3.2660185e-7,0.0042964816,0.00036267625,0.000069685586,0.000028087754,0.000008284516,0.00006735142],"genre_scores_gemma":[0.99705976,0.0001550078,0.000034046825,0.0003268726,0.002362031,0.0000013188913,0.0000125547185,8.0634567e-7,0.000047610145],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989599,0.0002521591,0.00026160988,0.00014861986,0.00010541061,0.00027232704],"domain_scores_gemma":[0.999618,0.00011138987,0.00010739526,0.000044413806,0.000046195593,0.00007261122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050130504,0.00010811556,0.0001896345,0.0000058413575,0.00033333097,0.00029675782,0.00020132972,0.000096654876,0.00070417894],"category_scores_gemma":[0.000037386235,0.000034966248,0.00006471738,0.00018854282,0.000068984256,0.00012663106,0.000103595674,0.0002829999,0.0000061049245],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006914929,0.000061152976,0.10142652,0.000005390107,0.000045523808,0.00003165207,0.00032669684,0.000011702696,0.8873759,0.000041287774,0.0013926197,0.00921244],"study_design_scores_gemma":[0.00019158979,0.00012508623,0.9817975,0.000057485995,0.000022045691,0.00014035171,0.00009612036,0.000005468783,0.006982056,0.0007505554,0.009696362,0.00013538968],"about_ca_topic_score_codex":0.00007302346,"about_ca_topic_score_gemma":0.00052194716,"teacher_disagreement_score":0.8803938,"about_ca_system_score_codex":0.000017917748,"about_ca_system_score_gemma":0.000022574926,"threshold_uncertainty_score":0.77102655},"labels":[],"label_agreement":null},{"id":"W3133726023","doi":"10.1038/s41396-021-00932-y","title":"Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":235,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China; U.S. Department of Veterans Affairs","keywords":"Biology; Cold seep; Metagenomics; Ecology; Microbial ecology; Microbial population biology; Human virome; Host (biology); Microbial mat; Biogeochemical cycle; Geomicrobiology; Ecosystem; Biogeochemistry; Environmental biotechnology; Bacteria; Gene; Genetics","score_opus":0.0129955331826679,"score_gpt":0.2155973232935198,"score_spread":0.2026017901108519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3133726023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99758065,0.000027496339,0.00012783978,0.0010333402,0.00013511536,0.000048443686,0.000017603363,0.0000069833477,0.001022536],"genre_scores_gemma":[0.99697703,0.000020894922,0.00017097694,0.00022826986,0.0000241335,3.9280525e-7,0.0000023432833,0.0000063533503,0.0025695954],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992499,0.00012102836,0.00012779627,0.00009590568,0.00023254423,0.00017287832],"domain_scores_gemma":[0.9995186,0.00003887557,0.00020429562,0.00013297972,0.000036951074,0.000068302106],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021402635,0.000075497985,0.00011407833,0.00000985587,0.00047012357,0.000040845454,0.00021557859,0.000035974226,0.0021496129],"category_scores_gemma":[0.000026257938,0.00005067744,0.00006291825,0.0001476263,0.00009390167,0.0002111916,0.00036718496,0.000284103,0.00004881699],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001421259,0.0005260303,0.28610715,0.000006393922,0.0003569992,0.00022681618,0.0027871127,0.0075689675,0.6874178,0.000008761634,0.014588482,0.0002633694],"study_design_scores_gemma":[0.0007642013,0.000108021995,0.9521817,0.00008012902,0.00010176869,0.00019657305,0.0007971994,0.0003749271,0.043103646,0.00008879942,0.0020653233,0.00013771284],"about_ca_topic_score_codex":0.00024031808,"about_ca_topic_score_gemma":0.0010937803,"teacher_disagreement_score":0.6660746,"about_ca_system_score_codex":0.00018020395,"about_ca_system_score_gemma":0.000016699616,"threshold_uncertainty_score":0.99876255},"labels":[],"label_agreement":null},{"id":"W3133776405","doi":"10.1038/s41396-021-00939-5","title":"Competition between strains of <i>Borrelia afzelii</i> in the host tissues and consequences for transmission to ticks","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Neuchâtel; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Borrelia afzelii; Host (biology); Transmission (telecommunications); Competition (biology); Borrelia; Zoology; Ecology; Virology; Microbiology; Borrelia burgdorferi; Immunology; Antibody","score_opus":0.020224792679199816,"score_gpt":0.280127883266709,"score_spread":0.2599030905875092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3133776405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98551744,0.0036188678,0.0018610077,0.008284365,0.00017026196,0.00020672737,0.000072705705,0.000008028854,0.0002606191],"genre_scores_gemma":[0.99907744,0.00027350086,0.000084750485,0.0003836901,0.00006637575,0.0000062948584,0.000013613859,0.000005367849,0.000088941975],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999209,0.00030322294,0.0002150589,0.00008807924,0.000036406575,0.00014825202],"domain_scores_gemma":[0.99937993,0.00034723614,0.00007935998,0.00009501469,0.000078560864,0.000019866611],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041585256,0.00007734769,0.00016145302,0.000041458155,0.00019129018,0.000026218017,0.00013920544,0.00006317765,0.00015719433],"category_scores_gemma":[0.00008105255,0.0000441944,0.000055048793,0.000089048466,0.00018868703,0.000043034728,0.000015175232,0.0002064736,0.000008086558],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016091733,0.0002305979,0.017135596,0.000059149635,0.00024583383,0.000024334931,0.008251608,0.000042158026,0.94865936,0.0031948749,0.0046363417,0.017359203],"study_design_scores_gemma":[0.004293092,0.0017588581,0.56870157,0.00067235384,0.0005527895,0.0023724881,0.010340082,0.000007324734,0.31986186,0.01438324,0.07662839,0.00042796927],"about_ca_topic_score_codex":0.00004560218,"about_ca_topic_score_gemma":0.00005650335,"teacher_disagreement_score":0.62879753,"about_ca_system_score_codex":0.000012832862,"about_ca_system_score_gemma":0.00009527508,"threshold_uncertainty_score":0.18021953},"labels":[],"label_agreement":null},{"id":"W3134014361","doi":"10.1038/s41396-021-00924-y","title":"Regulation of mating genes during arbuscular mycorrhizal isolate co-existence—where is the evidence?","year":2021,"lang":"en","type":"letter","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; University of Ottawa","keywords":"Biology; Rhizophagus irregularis; Mating; Gene; Fungus; Strain (injury); Genetics; Mating type; Arbuscular mycorrhizal; Symbiosis; Botany; Evolutionary biology; Bacteria","score_opus":0.03181632569711134,"score_gpt":0.23662418610176758,"score_spread":0.20480786040465623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134014361","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.34854475,0.011724873,0.000020396617,0.63674253,0.0011692524,0.00026104884,0.00035401492,0.000026820353,0.0011563301],"genre_scores_gemma":[0.27453625,0.14576258,0.0007757447,0.404524,0.11160272,0.00009153531,0.0024708828,0.00005429592,0.06018197],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976677,0.00053654896,0.00060466933,0.0002429578,0.00060529646,0.00034285107],"domain_scores_gemma":[0.9957653,0.0029925404,0.00077950937,0.00017604191,0.00023978773,0.000046795405],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00066567934,0.000260115,0.0003444011,0.000024340588,0.0010279394,0.00028271432,0.0007635048,0.00029836068,0.017204337],"category_scores_gemma":[0.00020664194,0.00007192481,0.00039727023,0.00027068317,0.00003376469,0.00023703682,0.00008999098,0.001734898,0.00014242888],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003454433,0.000011329782,0.00422993,0.00008952746,0.00014921976,0.000071542585,0.0007208376,0.00006830061,0.10025569,0.0000246698,0.8924747,0.0018697066],"study_design_scores_gemma":[0.000067608766,0.00019443533,0.020175328,0.004920528,0.00035375365,0.005452999,0.001541728,0.0007184068,0.0035281733,0.0030443245,0.9594244,0.00057832786],"about_ca_topic_score_codex":0.00049587176,"about_ca_topic_score_gemma":0.00003242103,"teacher_disagreement_score":0.23221852,"about_ca_system_score_codex":0.00004405533,"about_ca_system_score_gemma":0.000028807095,"threshold_uncertainty_score":0.9836941},"labels":[],"label_agreement":null},{"id":"W3135640894","doi":"10.1038/s41396-021-00920-2","title":"Conserved and reproducible bacterial communities associate with extraradical hyphae of arbuscular mycorrhizal fungi","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"Office of Science; Clemson University; U.S. Department of Energy","keywords":"Biology; Hypha; Arbuscular mycorrhizal fungi; Mycorrhizal fungi; Symbiosis; Arbuscular mycorrhizal; Microbial ecology; Botany; Fungus; Microbiology; Mycology; Ecology; Bacteria; Genetics; Immunology","score_opus":0.015615584642046624,"score_gpt":0.19339063952618582,"score_spread":0.1777750548841392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3135640894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948443,0.0014623652,0.0000075819894,0.002127715,0.0002562905,0.000053758427,0.00022764156,0.000011934436,0.0010083953],"genre_scores_gemma":[0.99652314,0.002180644,0.000114362156,0.00019031324,0.00041612404,0.0000014596618,0.0001620444,0.0000011911992,0.00041074588],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99899167,0.00032774592,0.00021924714,0.00010278158,0.00018608956,0.00017247572],"domain_scores_gemma":[0.998276,0.0012788774,0.00015070735,0.00008711997,0.0001287962,0.00007852155],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00050384563,0.00009604443,0.00018808054,0.000008420171,0.0003523541,0.00012279644,0.00016885049,0.00005247785,0.005125969],"category_scores_gemma":[0.00011712738,0.000030580773,0.00007705286,0.00013174255,0.000032077834,0.000113837246,0.00005581691,0.00034155246,0.00001657776],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00088180776,0.0003922294,0.3548958,0.000028266562,0.00042484733,0.00020863938,0.0021339804,0.000036127043,0.60717887,0.0016498975,0.02423895,0.007930585],"study_design_scores_gemma":[0.0013089884,0.002423324,0.5474245,0.0011611945,0.00069497793,0.031470004,0.021755777,0.0006067604,0.09288652,0.009191476,0.28984335,0.0012331373],"about_ca_topic_score_codex":0.0003816909,"about_ca_topic_score_gemma":0.00036047696,"teacher_disagreement_score":0.51429236,"about_ca_system_score_codex":0.00000976623,"about_ca_system_score_gemma":0.000032089873,"threshold_uncertainty_score":0.9957835},"labels":[],"label_agreement":null},{"id":"W3158506324","doi":"10.1038/s41396-021-00988-w","title":"Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":315,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Health and Medical Research Council; Australian Research Council; Department of Education and Training; Australian Government","keywords":"Generalist and specialist species; Biology; Ecology; Metagenomics; Habitat; Ecosystem; Ecological niche; Microbial ecology; Microbiome; Bacteria","score_opus":0.018245219334155658,"score_gpt":0.2570083545091979,"score_spread":0.23876313517504225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3158506324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952938,0.000072290444,0.000044874178,0.0030164318,0.00083318935,0.00015655471,0.000020836154,0.000006761537,0.00055526843],"genre_scores_gemma":[0.997932,0.000031380023,0.00038477514,0.0011283307,0.000200996,0.00000888349,0.000011813662,0.000009365419,0.0002924563],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975523,0.0013701974,0.0003887133,0.00019947716,0.00012558188,0.00036374276],"domain_scores_gemma":[0.9991776,0.00012665437,0.000112917514,0.00043623577,0.000015986583,0.00013065498],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012664236,0.00014366425,0.00031549818,0.000028578079,0.00034356595,0.000053276173,0.0005722081,0.000085114894,0.007049328],"category_scores_gemma":[0.000102161976,0.00009893773,0.00011570172,0.00019886642,0.000096384654,0.00012768542,0.00045152375,0.00051782955,0.00041362667],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019556528,0.0002813298,0.024924869,0.0000072992684,0.000052859607,0.0000937538,0.0028639867,0.0022080906,0.9606435,0.00023318178,0.007719697,0.00077590125],"study_design_scores_gemma":[0.0012543234,0.00014168382,0.90430015,0.000026671376,0.000042793945,0.0005818024,0.00022110564,0.00013271142,0.017390875,0.005166826,0.070407934,0.00033314028],"about_ca_topic_score_codex":0.0003729522,"about_ca_topic_score_gemma":0.054860648,"teacher_disagreement_score":0.94325256,"about_ca_system_score_codex":0.00019667872,"about_ca_system_score_gemma":0.00004989218,"threshold_uncertainty_score":0.99385834},"labels":[],"label_agreement":null},{"id":"W3159026682","doi":"10.1038/s41396-021-01084-9","title":"Proteomic traits vary across taxa in a coastal Antarctic phytoplankton bloom","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Gordon and Betty Moore Foundation; Killam Trusts; Dalhousie University; Simons Foundation; National Science Foundation","keywords":"Biology; Taxon; Bloom; Phytoplankton; Ecology; Algal bloom; Oceanography; Evolutionary biology; Nutrient","score_opus":0.012269802407594113,"score_gpt":0.2480317085384191,"score_spread":0.23576190613082498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159026682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968613,0.000031721636,0.00003108056,0.001655503,0.00015597095,0.00009085399,0.00001166603,0.000006551567,0.001155399],"genre_scores_gemma":[0.9981232,0.000051672745,0.0001790199,0.0009932045,0.00008799485,0.0000036558424,0.0000052324012,0.000006888439,0.0005491224],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99879843,0.0004904555,0.0001872662,0.00011183404,0.000088062974,0.0003239403],"domain_scores_gemma":[0.9996115,0.00007822729,0.00009036698,0.00015901212,0.0000068946965,0.00005397542],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00056251144,0.00009403878,0.00014626347,0.000011300896,0.00042280686,0.000030571257,0.00034922975,0.00007497446,0.005674252],"category_scores_gemma":[0.000037616537,0.00006879709,0.000057101297,0.00014566502,0.00022524664,0.00011950136,0.00029442512,0.00089682476,0.00027919174],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022555378,0.00048721104,0.052752584,0.000013074867,0.000053335865,0.00037676617,0.009973787,0.0017698448,0.91721696,0.000038557693,0.011193018,0.005899285],"study_design_scores_gemma":[0.0011212438,0.00016163496,0.9688719,0.000032441523,0.00001543313,0.0034686811,0.00054468337,0.00013624753,0.011153065,0.0062511596,0.008046065,0.00019742812],"about_ca_topic_score_codex":0.00014374229,"about_ca_topic_score_gemma":0.004424826,"teacher_disagreement_score":0.91611934,"about_ca_system_score_codex":0.000063583226,"about_ca_system_score_gemma":0.0000441122,"threshold_uncertainty_score":0.99523467},"labels":[],"label_agreement":null},{"id":"W3167545178","doi":"10.1038/s41396-021-01026-5","title":"Degradation of biological macromolecules supports uncultured microbial populations in Guaymas Basin hydrothermal sediments","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Science Foundation","keywords":"Biology; Metagenomics; Phylum; Thermophile; Extracellular polymeric substance; Microbial mat; Population; Heterotroph; Microbiology; Biochemistry; Bacteria; Cyanobacteria; Biofilm; Gene; Enzyme","score_opus":0.028611989796377222,"score_gpt":0.2665429727698609,"score_spread":0.23793098297348367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3167545178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976814,0.0009495839,0.00023358954,0.00064876373,0.0001868371,0.000066873086,0.000022588752,8.0493845e-7,0.00020958153],"genre_scores_gemma":[0.9978729,0.00026232976,0.0012539097,0.00018643131,0.00014333666,0.0000023979921,0.000047106998,0.0000073114807,0.00022427978],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992698,0.00012639412,0.00025274162,0.00012387775,0.00007882092,0.00014838741],"domain_scores_gemma":[0.9996429,0.0000071555587,0.00011362631,0.00012850243,0.000076724886,0.000031096693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019736834,0.0000904496,0.000120222976,0.000021598935,0.00009573364,0.000016908698,0.00011543527,0.000073719944,0.000040280596],"category_scores_gemma":[0.000040552808,0.00006166978,0.00008620682,0.000069218244,0.00005683746,9.4741625e-7,0.00007734449,0.00009337679,0.0000014181973],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025439816,0.000059244903,0.03873943,0.0000019871518,0.00004258189,0.000008748163,0.000091388676,0.00021598028,0.9596575,0.000077937424,0.00051301357,0.0005667675],"study_design_scores_gemma":[0.0010247481,0.000158339,0.24868071,0.000023680323,0.000038069655,0.00048727336,0.0005430702,0.000027793665,0.74152005,0.0011690162,0.0061312816,0.0001959582],"about_ca_topic_score_codex":0.000016915134,"about_ca_topic_score_gemma":0.000046028326,"teacher_disagreement_score":0.21813741,"about_ca_system_score_codex":0.000010948638,"about_ca_system_score_gemma":0.000067311645,"threshold_uncertainty_score":0.25148207},"labels":[],"label_agreement":null},{"id":"W3174509424","doi":"10.1038/s41396-021-01044-3","title":"Methane-dependent selenate reduction by a bacterial consortium","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Canada First Research Excellence Fund; Government of Alberta","keywords":"Selenate; Biology; Methanotroph; Anaerobic oxidation of methane; Methane; Nitrate; Environmental chemistry; Microorganism; Bacteria; Ecology; Chemistry; Selenium","score_opus":0.008974157525017998,"score_gpt":0.2193431816995659,"score_spread":0.2103690241745479,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174509424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98524535,0.00037468786,0.00019623502,0.0033441081,0.0015191804,0.00007189628,0.0000051958123,0.000017416247,0.00922592],"genre_scores_gemma":[0.9833473,0.0006092578,0.00033868154,0.00023229247,0.00041987284,0.000003013184,0.0000061267765,0.000017653972,0.0150257945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986512,0.0003194583,0.00025870194,0.0001657564,0.00034351644,0.00026134364],"domain_scores_gemma":[0.99948883,0.000029682004,0.0001560497,0.0001807311,0.00001560052,0.00012910886],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007421179,0.0001098869,0.00012856115,0.000012973103,0.00024928025,0.00008870037,0.00020110022,0.0000666963,0.017804079],"category_scores_gemma":[0.000025976551,0.00006725359,0.00007385171,0.0001466058,0.00010096266,0.00014937653,0.00011483792,0.00046416474,0.0005308882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004138801,0.00006895587,0.000106041516,0.000001738747,0.000069764654,0.000036742294,0.0006767762,0.0011067432,0.97045547,0.00002969975,0.023252795,0.0041539166],"study_design_scores_gemma":[0.0026172632,0.00023004523,0.001689756,0.000043473367,0.0002821886,0.011400547,0.0015707267,0.00069996685,0.7014567,0.010474938,0.26887423,0.0006601206],"about_ca_topic_score_codex":0.00004316491,"about_ca_topic_score_gemma":0.000004792661,"teacher_disagreement_score":0.26899868,"about_ca_system_score_codex":0.000102645994,"about_ca_system_score_gemma":0.000031067953,"threshold_uncertainty_score":0.9830938},"labels":[],"label_agreement":null},{"id":"W3177213766","doi":"10.1038/s41396-021-01037-2","title":"Verrucomicrobial methanotrophs grow on diverse C3 compounds and use a homolog of particulate methane monooxygenase to oxidize acetone","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Biological Resources; Ministry of Education, India; National Research Foundation of Korea; Ministry of Oceans and Fisheries; Ministry of Environment; Agence Nationale de la Recherche; National Research Foundation","keywords":"Methane monooxygenase; Biology; Monooxygenase; Acetone; Particulates; Environmental chemistry; Methane; Methanotroph; Microbiology; Biochemistry; Ecology; Anaerobic oxidation of methane; Cytochrome P450; Enzyme; Chemistry","score_opus":0.01968205425431767,"score_gpt":0.24625701555949095,"score_spread":0.2265749613051733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3177213766","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971695,0.00050525635,0.00078438444,0.000844823,0.00052822346,0.000088399305,0.000048490205,0.0000044062845,0.0000264983],"genre_scores_gemma":[0.99569315,0.0005717636,0.0018067261,0.00094608526,0.00038250824,0.0000024023896,0.000017131686,0.000017147531,0.0005630659],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989266,0.00026757634,0.0002476311,0.00020960697,0.00011968082,0.00022893028],"domain_scores_gemma":[0.9992819,0.00003251616,0.0001257721,0.00029232955,0.00013187126,0.00013561311],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000365504,0.00014834778,0.00023002902,0.000046150548,0.00012935644,0.000041871986,0.00013901325,0.00009496813,0.00004717204],"category_scores_gemma":[0.00017806665,0.00010859151,0.00011946162,0.000112958944,0.000081461956,0.000010327401,0.00017683979,0.00018908805,0.0000108608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046327978,0.00006905123,0.00009089523,0.0000063371663,0.00011990318,0.000021500015,0.00014740971,0.0003325365,0.98965955,0.0000441459,0.008497168,0.00054822],"study_design_scores_gemma":[0.0010453652,0.0002738391,0.0033479347,0.000021035312,0.00011330897,0.0005343623,0.00009987532,0.00000946629,0.9758405,0.00008470252,0.0184899,0.00013970648],"about_ca_topic_score_codex":0.00004418994,"about_ca_topic_score_gemma":0.000023653947,"teacher_disagreement_score":0.013819048,"about_ca_system_score_codex":0.00001310106,"about_ca_system_score_gemma":0.00006505873,"threshold_uncertainty_score":0.44282332},"labels":[],"label_agreement":null},{"id":"W3185204656","doi":"10.1038/s41396-021-01030-9","title":"Novel Antarctic yeast adapts to cold by switching energy metabolism and increasing small RNA synthesis","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"McGill Space Institute; McGill University","keywords":"Biology; Transcriptome; Fermentation; Yeast; Ethanol fuel; Gene; Cell biology; Gene expression; Biochemistry","score_opus":0.015338618099523391,"score_gpt":0.22148262705731736,"score_spread":0.20614400895779397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3185204656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893764,0.00043724984,0.004050831,0.004756875,0.00009869293,0.00003707787,0.000007926078,0.0000074236705,0.0012275216],"genre_scores_gemma":[0.9957916,0.00024266857,0.002001837,0.0014713156,0.00013270255,0.0000036921829,3.4827073e-7,0.00001305105,0.00034279574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880034,0.00022157143,0.00015286566,0.00016077486,0.00025322425,0.0004112303],"domain_scores_gemma":[0.9992722,0.00019857679,0.000057368597,0.00014390364,0.00001043099,0.0003175181],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008879334,0.00009752339,0.00014741042,0.000029891273,0.00044074078,0.0001406612,0.0002519414,0.000038233986,0.000774022],"category_scores_gemma":[0.0003589613,0.00006972066,0.000042375374,0.00014250055,0.00006208958,0.00014941036,0.0003444348,0.00027994643,0.000052943356],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035081557,0.000053280724,0.0011283314,0.0000016118175,0.000037359685,0.00003980901,0.0002318885,0.00008362473,0.9807884,0.000093668314,0.0019577271,0.015549212],"study_design_scores_gemma":[0.0017691904,0.00021867763,0.30419466,0.00015366252,0.00024643593,0.011313531,0.0016106133,0.0038455648,0.42157736,0.0025031825,0.25160435,0.0009627751],"about_ca_topic_score_codex":0.0022837496,"about_ca_topic_score_gemma":0.0012042599,"teacher_disagreement_score":0.5592111,"about_ca_system_score_codex":0.00010320246,"about_ca_system_score_gemma":0.000037265378,"threshold_uncertainty_score":0.84749985},"labels":[],"label_agreement":null},{"id":"W3195023709","doi":"10.1038/s41396-021-01090-x","title":"Phages in the infant gut: a framework for virome development during early life","year":2021,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":82,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; McGill University Health Centre; Canada Research Chairs; Government of Canada; McGill University; Canadian Institute for Advanced Research","keywords":"Biology; Human virome; Microbial ecology; Microbiology; Metagenomics; Bacteria; Genetics","score_opus":0.04576413757488141,"score_gpt":0.33493826209701266,"score_spread":0.28917412452213126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3195023709","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.016086726,0.9809754,0.0005693106,0.00071646716,0.0006668023,0.00072702963,0.000016832668,0.000010455451,0.00023097673],"genre_scores_gemma":[0.0011625089,0.99490327,0.0022513242,0.00033087377,0.0004671253,0.000105838466,0.0000049578316,0.000035381072,0.0007387431],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99842924,0.0002317258,0.00058447436,0.00020159318,0.00021028444,0.00034268445],"domain_scores_gemma":[0.9989737,0.00029172594,0.0003683291,0.00028015356,0.00000792498,0.00007812374],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00068270403,0.00024979244,0.0005418884,0.000049612114,0.000521272,0.00031189615,0.0007536867,0.00014312162,0.001511382],"category_scores_gemma":[0.000100005076,0.00012672831,0.0003560584,0.00023437222,0.00006403185,0.00015136003,0.00023091705,0.0012204715,0.00020077253],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018054441,0.000277381,0.000025466514,0.0010365939,0.00043621822,0.00015396466,0.011518255,0.000036570622,0.00088708766,0.00010265916,0.0027215574,0.9827862],"study_design_scores_gemma":[0.000091799426,0.000018221031,0.006327448,0.003404562,0.00013004696,0.0008282299,0.00014130764,5.0871364e-7,0.0000071347013,0.000073460535,0.9887956,0.00018167571],"about_ca_topic_score_codex":0.000037554626,"about_ca_topic_score_gemma":0.000043278815,"teacher_disagreement_score":0.98607403,"about_ca_system_score_codex":0.00026344808,"about_ca_system_score_gemma":0.00009346412,"threshold_uncertainty_score":0.9994014},"labels":[],"label_agreement":null},{"id":"W3195521165","doi":"10.1038/s41396-021-01072-z","title":"Niche partitioning by photosynthetic plankton as a driver of CO2-fixation across the oligotrophic South Pacific Subtropical Ocean","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Max-Planck-Gesellschaft; Bundesministerium für Bildung und Forschung; Niedersächsische Ministerium für Wissenschaft und Kultur","keywords":"Ocean gyre; Biology; Prochlorococcus; Plankton; Phytoplankton; Ecosystem; Photosynthesis; Deep chlorophyll maximum; Oceanography; Photic zone; Population; Ecology; Marine ecosystem; Carbon fixation; Cyanobacteria; Synechococcus; Subtropics; Botany; Nutrient; Paleontology; Geology","score_opus":0.009603928393163331,"score_gpt":0.23217702676188784,"score_spread":0.22257309836872452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3195521165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966453,0.00005421482,0.000082476356,0.0021921021,0.00013480702,0.00005992284,0.000014308039,0.0000064042324,0.0008105033],"genre_scores_gemma":[0.9990612,0.000066936555,0.00002176169,0.0004018975,0.000051820516,0.0000012350719,0.000010967566,0.0000065903214,0.00037754595],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986378,0.0006717255,0.00021346907,0.00009983444,0.00014201694,0.00023518005],"domain_scores_gemma":[0.9993087,0.00018392743,0.00018299324,0.0002599565,0.000017784641,0.000046622263],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00045462287,0.000087551365,0.00013059466,0.000006600803,0.00087514933,0.000037509955,0.00034944268,0.000077174824,0.004921074],"category_scores_gemma":[0.00007419823,0.000052181982,0.00007894304,0.0001106683,0.0005155869,0.00006729854,0.00018364048,0.00061160483,0.00018218913],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026310622,0.00035042327,0.07059402,0.000011287512,0.0001441983,0.000031557,0.03257608,0.003959152,0.859475,0.00050965464,0.031217383,0.0008681247],"study_design_scores_gemma":[0.0031856264,0.0011837506,0.5518521,0.0001551115,0.00032909936,0.0037145468,0.023195928,0.0019437845,0.30059734,0.046996683,0.065907165,0.000938818],"about_ca_topic_score_codex":0.000058549285,"about_ca_topic_score_gemma":0.00010251328,"teacher_disagreement_score":0.55887765,"about_ca_system_score_codex":0.000047586786,"about_ca_system_score_gemma":0.00002703171,"threshold_uncertainty_score":0.99598855},"labels":[],"label_agreement":null},{"id":"W3200885023","doi":"10.1038/s41396-021-01108-4","title":"Non-diphtheriae <i>Corynebacterium</i> species are associated with decreased risk of pneumococcal colonization during infancy","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Fogarty International Center; Office of AIDS Research; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; School of Medicine, Duke University; Center for AIDS Research, University of Washington; University of Pennsylvania; National Institutes of Health; Children's Hospital of Philadelphia","keywords":"Biology; Streptococcus pneumoniae; Microbiome; Colonization; Microbiology; Colonisation resistance; Pneumococcal infections; Respiratory tract infections; Immunology; Antibiotics; Respiratory system; Genetics","score_opus":0.009325235118455068,"score_gpt":0.22557755653140446,"score_spread":0.2162523214129494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3200885023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972013,0.000058545906,0.00010889579,0.0010078935,0.00020689187,0.00012785743,0.000018374252,0.000024453862,0.0012457414],"genre_scores_gemma":[0.9984721,0.00016282838,0.00002023529,0.0001740355,0.00028434378,0.000004555264,0.0000066802136,0.000022201071,0.0008530498],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989599,0.00016502189,0.00030297265,0.000106296306,0.0002721342,0.00019365503],"domain_scores_gemma":[0.9986161,0.000085955704,0.0004680367,0.00020330404,0.000499892,0.00012670703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025509225,0.0001257506,0.0002884665,0.00006794827,0.00037118205,0.00004124918,0.00007555302,0.00007883055,0.00019888658],"category_scores_gemma":[0.00037740293,0.00007569168,0.00011762098,0.00036652267,0.00010082044,0.0000885519,0.000026564327,0.0004776462,0.000006142874],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000953642,0.00020436532,0.56832576,0.000021602516,0.00030474758,0.00015438462,0.0004435569,0.00015839729,0.43015352,0.0000030928982,0.00009781794,0.00003736542],"study_design_scores_gemma":[0.0016827597,0.00018333695,0.96050906,0.00035898195,0.0003372649,0.0011958824,0.00038709008,0.000040866023,0.03427775,0.000018764109,0.0009185281,0.00008968965],"about_ca_topic_score_codex":0.000005650182,"about_ca_topic_score_gemma":0.000056073826,"teacher_disagreement_score":0.39587578,"about_ca_system_score_codex":0.00007676153,"about_ca_system_score_gemma":0.0003028935,"threshold_uncertainty_score":0.30866173},"labels":[],"label_agreement":null},{"id":"W3201292328","doi":"10.1038/s41396-021-01109-3","title":"Plant-microbe interactions in the phyllosphere: facing challenges of the anthropocene","year":2021,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Plant Parasitism and Resistance","field":"Agricultural and Biological Sciences","cited_by":158,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Phyllosphere; Biology; Abiotic component; Ecology; Anthropocene; Context (archaeology); Biodiversity; Ecosystem; Environmental change; Resistance (ecology); Climate change; Global warming; Global change","score_opus":0.08372079351199185,"score_gpt":0.3094050598033124,"score_spread":0.22568426629132055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3201292328","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015770185,0.9932086,5.272363e-7,0.0031843162,0.0004658312,0.00015953479,0.00016563626,0.0000037485743,0.0012348011],"genre_scores_gemma":[0.004951841,0.99434376,0.000004161711,0.00007145208,0.0004455522,0.000004919197,0.00001282885,0.0000011618897,0.00016431205],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99831086,0.0007068605,0.00039894524,0.00013752174,0.00023502538,0.00021079429],"domain_scores_gemma":[0.9987688,0.0006261682,0.00044689953,0.00010610527,0.000026711063,0.00002529933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053250906,0.00017978308,0.0005240559,0.000007403528,0.0004223117,0.0000806361,0.0009675392,0.000077658835,0.00018042297],"category_scores_gemma":[0.00003202593,0.000033520715,0.0003928683,0.00026594097,0.00010816733,0.000056272,0.00008984225,0.0008755971,0.000007998737],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000030438455,0.00008264556,0.00001552443,0.00028869556,0.00008008398,0.00003994214,0.00024354015,0.0000024101794,0.0002315187,0.00031273774,0.0033752436,0.9953246],"study_design_scores_gemma":[0.000032773463,0.000017101516,0.0011861861,0.006601906,0.00010779774,0.0021425064,0.00094390125,7.726678e-7,0.00001643077,0.00010052281,0.988738,0.00011210599],"about_ca_topic_score_codex":0.00004243059,"about_ca_topic_score_gemma":0.00091522065,"teacher_disagreement_score":0.9952125,"about_ca_system_score_codex":0.000027689677,"about_ca_system_score_gemma":0.000036611156,"threshold_uncertainty_score":0.38040826},"labels":[],"label_agreement":null},{"id":"W3209042695","doi":"10.1038/s41396-021-01146-y","title":"Terrestrial connectivity, upstream aquatic history and seasonality shape bacterial community assembly within a large boreal aquatic network","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université du Québec à Montréal","funders":"Hydro-Québec; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Seasonality; Boreal; Aquatic ecosystem; Ecology; Upstream (networking)","score_opus":0.028013870581547036,"score_gpt":0.2463060918244335,"score_spread":0.21829222124288647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209042695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956626,0.00010499285,0.00008244294,0.0010010871,0.0010118964,0.00011566539,0.000007851753,0.000017548084,0.0019958771],"genre_scores_gemma":[0.99801326,0.00003502659,0.00016939512,0.0010908744,0.00048032354,0.0000034120897,0.0000312641,0.00001271523,0.0001637419],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9934956,0.0054709576,0.00032554462,0.00014486273,0.00016842585,0.00039463135],"domain_scores_gemma":[0.99804705,0.0010963202,0.0002762573,0.00042986163,0.000007991673,0.00014251407],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0032257952,0.00017942618,0.00031961102,0.000010393979,0.0012961862,0.00005838029,0.0004931174,0.00014164417,0.0046721925],"category_scores_gemma":[0.00034616786,0.00013744207,0.00009563703,0.00009969829,0.00046347498,0.00017729404,0.0006899869,0.0016462959,0.00006842682],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033309085,0.0046460056,0.5179918,0.0000697856,0.0010877841,0.00030169383,0.044477098,0.0015683669,0.09962209,0.001711916,0.31232977,0.01286277],"study_design_scores_gemma":[0.0046595777,0.0008589992,0.9051693,0.000096482276,0.00028028627,0.0018157641,0.0012864564,0.008781737,0.00044901966,0.044421863,0.031459387,0.0007211179],"about_ca_topic_score_codex":0.0013295233,"about_ca_topic_score_gemma":0.019974409,"teacher_disagreement_score":0.38717753,"about_ca_system_score_codex":0.00029843533,"about_ca_system_score_gemma":0.00015985183,"threshold_uncertainty_score":0.99790853},"labels":[],"label_agreement":null},{"id":"W3216525820","doi":"10.1038/s41396-021-01156-w","title":"Retraction Note: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi","year":2021,"lang":"en","type":"retraction","venue":"The ISME Journal","topic":"Forest Ecology and Biodiversity Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":true,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Gene; RNA; Clade; Agaricomycetes; Gene expression; RNA editing; Genetics; Phylogenetics; Botany","score_opus":0.030840305391119063,"score_gpt":0.22476172861292473,"score_spread":0.19392142322180567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3216525820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98258114,0.012889436,0.00001238063,0.0010253845,0.0026410518,0.00013364472,0.00004298243,0.000012798921,0.0006612072],"genre_scores_gemma":[0.9768846,0.01969242,0.000082679086,0.000017575074,0.0027887842,0.0000019435374,0.000053430853,0.0000012811649,0.0004772847],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986572,0.00021725302,0.00035578813,0.00021657559,0.00031406726,0.0002390761],"domain_scores_gemma":[0.99895906,0.0002604718,0.0005463828,0.000043773467,0.00014384376,0.000046466583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008013339,0.00016667171,0.0002960669,0.000047680212,0.0007206876,0.00007074692,0.00016697538,0.0005730206,0.00023189254],"category_scores_gemma":[0.00006940536,0.00006358706,0.000117486896,0.00025172875,0.00010333646,0.00022350605,0.000093837814,0.0013927164,0.0000061042183],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028529175,0.00024678238,0.026527671,0.000107315354,0.000113703085,0.00010448432,0.0007386048,0.00008059234,0.84223765,0.00004098681,0.04979052,0.07972637],"study_design_scores_gemma":[0.0005128903,0.00043617186,0.9320259,0.001029852,0.00012778175,0.0005774543,0.0051361313,0.00004768715,0.0222953,0.00075048883,0.036603026,0.00045732406],"about_ca_topic_score_codex":0.00011307919,"about_ca_topic_score_gemma":0.00044135333,"teacher_disagreement_score":0.9054982,"about_ca_system_score_codex":0.0002107598,"about_ca_system_score_gemma":0.00002592783,"threshold_uncertainty_score":0.60507375},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"not_applicable","genre":"other","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"not_applicable","genre":"editorial","about_ca_system":false,"about_ca_topic":false,"confidence":"low"}],"label_agreement":"agree"},{"id":"W4200453169","doi":"10.1038/s41396-021-01178-4","title":"Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Joint Genome Institute; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Biology; Spring (device); Sampling (signal processing); Microbial ecology; Microbial population biology; Resolution (logic); Computational biology; Evolutionary biology; Ecology; Genetics; Bacteria; Artificial intelligence","score_opus":0.05782203216645829,"score_gpt":0.2592101987727392,"score_spread":0.20138816660628092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200453169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946746,0.00003680674,0.0010455938,0.0018960331,0.00046997835,0.000086385284,0.0000032397113,0.000010165117,0.0017771692],"genre_scores_gemma":[0.9974935,0.0000089572795,0.00074687676,0.0012410799,0.0001289751,0.0000015785275,0.000011209831,0.000013341014,0.0003544483],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978395,0.0014184915,0.00025293097,0.0001008944,0.0000937246,0.00029447777],"domain_scores_gemma":[0.998254,0.0010194695,0.00019246824,0.00047060393,0.000014370137,0.00004908601],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001330394,0.00012015059,0.00012854264,0.000023129787,0.0050447816,0.000060227765,0.0005223315,0.00007085641,0.0011553732],"category_scores_gemma":[0.00019746601,0.00007940965,0.00010729397,0.00012776353,0.00020494456,0.000063278494,0.0004844033,0.0013772007,0.00014109099],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089717294,0.00015018493,0.0070867543,0.0000026256268,0.000008051429,0.000003841998,0.0011977529,0.068179786,0.92207247,0.000024360688,0.0010616655,0.00012281506],"study_design_scores_gemma":[0.0019814323,0.00047714723,0.8418872,0.00016734848,0.00018142429,0.00068962056,0.0028292912,0.009200162,0.10970932,0.005014031,0.027178098,0.00068496],"about_ca_topic_score_codex":0.00048648147,"about_ca_topic_score_gemma":0.0075462954,"teacher_disagreement_score":0.8348004,"about_ca_system_score_codex":0.00042136968,"about_ca_system_score_gemma":0.000025428064,"threshold_uncertainty_score":0.9997577},"labels":[],"label_agreement":null},{"id":"W4200467852","doi":"10.1038/s41396-021-01152-0","title":"Mammalian gut metabolomes mirror microbiome composition and host phylogeny","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Centers for Disease Control and Prevention; National Institutes of Health; Ben-Gurion University of the Negev; European Commission; Georgia Institute of Technology; Azrieli Foundation; Israel Science Foundation; Gordon and Betty Moore Foundation","keywords":"Metabolome; Microbiome; Biology; Metagenomics; Metabolomics; Host (biology); Gut flora; Gut microbiome; Microbial metabolism; Phylogenetics; Microbial ecology; Composition (language); Computational biology; Evolutionary biology; Bacteria; Ecology; Biochemistry; Genetics; Bioinformatics; Gene","score_opus":0.010162697828116024,"score_gpt":0.25492341837239435,"score_spread":0.24476072054427833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200467852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901947,0.004939476,0.00013393632,0.0042295544,0.000233915,0.00005711679,0.000027414895,0.0000035258363,0.00018040958],"genre_scores_gemma":[0.9943897,0.0011677801,0.0013773078,0.0015935473,0.00025956513,0.0000012228121,0.00003688035,0.000013316351,0.0011606482],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928695,0.00012392263,0.00016732376,0.0001484414,0.000059159247,0.0002141843],"domain_scores_gemma":[0.9995582,0.0000067313704,0.00008645572,0.00017220479,0.000087900065,0.00008847742],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022332663,0.00010436731,0.00012217168,0.000025902333,0.0002820107,0.00007297819,0.00012021406,0.000081551356,0.00007746562],"category_scores_gemma":[0.000008304592,0.00007454697,0.00007447412,0.00005964075,0.00007693455,0.000003544014,0.00008227471,0.00016615684,0.00001527155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021924072,0.000029700459,0.00047341298,0.0000098204555,0.00004766476,0.0000122127785,0.00008439044,3.395653e-7,0.995623,0.000039628274,0.003349198,0.00030874152],"study_design_scores_gemma":[0.0007906195,0.00012130587,0.10941536,0.00002190724,0.00007158497,0.0047468883,0.0002586152,0.0000023502541,0.78023416,0.00009050251,0.10405738,0.00018935332],"about_ca_topic_score_codex":0.000009557634,"about_ca_topic_score_gemma":0.000023852699,"teacher_disagreement_score":0.21538883,"about_ca_system_score_codex":0.000010469794,"about_ca_system_score_gemma":0.00009722183,"threshold_uncertainty_score":0.30399376},"labels":[],"label_agreement":null},{"id":"W4206050445","doi":"10.1038/s41396-020-0714-3","title":"Correction: Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system","year":2020,"lang":"en","type":"erratum","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Villum Fonden","keywords":"Biology; Oxidizing agent; Wastewater; Candidatus; Bacteria; Waste management; Genetics; Engineering; 16S ribosomal RNA","score_opus":0.015926397144755175,"score_gpt":0.21815539309823614,"score_spread":0.20222899595348098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206050445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926345,0.00014970284,0.000031046777,0.0002630928,0.006054132,0.00040306817,0.00010452424,0.000038664162,0.00032129756],"genre_scores_gemma":[0.96224105,0.0011475886,0.0013758407,0.00007673395,0.004067263,0.000053701497,0.002204203,0.00013902466,0.028694611],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99790806,0.0003509177,0.000540091,0.00037769735,0.0004975275,0.000325683],"domain_scores_gemma":[0.9987838,0.000036426944,0.00063697906,0.0003167134,0.000020722331,0.00020534366],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017941384,0.00041263827,0.00051060534,0.00007297847,0.00040560946,0.00014117079,0.00029875938,0.00022737574,0.00016577319],"category_scores_gemma":[0.000006238501,0.00025440584,0.00014314556,0.00014428729,0.00015961434,0.0003447157,0.00015601364,0.000550479,0.000044769116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014648943,0.00056988467,0.006570934,0.000119783486,0.001299631,0.00031017765,0.042816225,0.00021009683,0.9025865,0.000008535542,0.027234899,0.016808417],"study_design_scores_gemma":[0.01352065,0.01144707,0.14087182,0.004380529,0.0058510704,0.004748909,0.016628165,0.06232712,0.52079606,0.0005259123,0.21476243,0.0041402434],"about_ca_topic_score_codex":0.0037689891,"about_ca_topic_score_gemma":0.0005288466,"teacher_disagreement_score":0.38179043,"about_ca_system_score_codex":0.0007039769,"about_ca_system_score_gemma":0.000049768598,"threshold_uncertainty_score":0.9999908},"labels":[],"label_agreement":null},{"id":"W4214842754","doi":"10.1038/s41396-022-01202-1","title":"Diversity and origins of bacterial and archaeal viruses on sinking particles reaching the abyssal ocean","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Gordon and Betty Moore Foundation; Simons Foundation","keywords":"Biology; Abyssal zone; Archaea; Diversity (politics); Geomicrobiology; Ecology; Marine bacteriophage; Oceanography; Microbial ecology; Evolutionary biology; Bacteria; Paleontology; Environmental biotechnology; Fishery","score_opus":0.02744156421968607,"score_gpt":0.23870412284951809,"score_spread":0.211262558629832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214842754","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986198,0.000015068041,0.000016753982,0.001003917,0.0001994558,0.000041371146,0.000009005283,0.00000388484,0.000090771355],"genre_scores_gemma":[0.999545,0.00002627974,0.000036727684,0.00028324057,0.00007697681,2.9006947e-7,2.3268548e-7,0.0000035102737,0.000027780441],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994863,0.00012809658,0.00009360605,0.000067197536,0.00012117262,0.00010360763],"domain_scores_gemma":[0.99972636,0.00008017688,0.00008815879,0.00007040421,0.0000022482438,0.000032655345],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00038363456,0.000049805818,0.00005758118,0.000011473506,0.0030815094,0.000033370216,0.0001475003,0.000007944263,0.00052201364],"category_scores_gemma":[0.000009468331,0.000028789334,0.000025810537,0.00003584426,0.00016732611,0.00011256427,0.0011725845,0.0002775931,0.0000016977046],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040753,0.00016659443,0.060581643,0.00000428215,0.00007916081,0.000022320282,0.06079358,0.0009006564,0.8534454,0.00088923547,0.0013656708,0.021343898],"study_design_scores_gemma":[0.00082350615,0.0005086637,0.92852765,0.00002632864,0.00010171099,0.0012579962,0.004517537,0.0004182912,0.008469798,0.002251252,0.052898258,0.00019897628],"about_ca_topic_score_codex":0.00069175084,"about_ca_topic_score_gemma":0.00008425085,"teacher_disagreement_score":0.867946,"about_ca_system_score_codex":0.00008392534,"about_ca_system_score_gemma":0.0000041340554,"threshold_uncertainty_score":0.99821633},"labels":[],"label_agreement":null},{"id":"W4220973876","doi":"10.1038/s41396-022-01222-x","title":"Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biological and Environmental Research; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Center for Dark Energy Biosphere Investigations; U.S. Department of Energy; Dalio Foundation; Canadian Institute for Advanced Research; Office of Science; California Institute of Technology; Schmidt Ocean Institute; John Templeton Foundation","keywords":"Hydrothermal vent; Biology; Biogeography; Geomicrobiology; Ecology; Microbial ecology; Hydrothermal circulation; Oceanography; Evolutionary biology; Paleontology; Environmental biotechnology; Bacteria","score_opus":0.008448070838028544,"score_gpt":0.18562478704183769,"score_spread":0.17717671620380915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220973876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940793,0.0005763885,0.000001615494,0.0016625,0.00030526653,0.00012034137,0.000016510843,0.0000032857022,0.003234826],"genre_scores_gemma":[0.9987403,0.00008808627,0.000015138372,0.0009032405,0.000027935965,0.0000052009927,0.000003892353,0.0000059033555,0.0002102872],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99810493,0.0013741384,0.00021036217,0.00004820307,0.00013692773,0.0001254418],"domain_scores_gemma":[0.9992973,0.0001900452,0.0002363102,0.00024841324,0.0000068000604,0.000021138592],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008399231,0.00008074266,0.00015564535,0.000043050528,0.0006172874,0.0000025110346,0.0005890819,0.000029303423,0.00592972],"category_scores_gemma":[0.0000046058094,0.00004870627,0.00010161471,0.00006808096,0.0012283211,0.000035949084,0.00047384188,0.0005662982,0.0000062000236],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006836902,0.002083712,0.028822405,0.0000318336,0.0007924705,0.00001105059,0.08774736,0.011255274,0.66586685,0.003682647,0.19075938,0.0021100857],"study_design_scores_gemma":[0.012747567,0.0048350086,0.62462914,0.00011158277,0.0004472668,0.0014548475,0.009980419,0.001435423,0.0072036535,0.04005066,0.2962403,0.0008641511],"about_ca_topic_score_codex":0.000539292,"about_ca_topic_score_gemma":0.000059127364,"teacher_disagreement_score":0.6586632,"about_ca_system_score_codex":0.00013487742,"about_ca_system_score_gemma":0.000026056476,"threshold_uncertainty_score":0.994979},"labels":[],"label_agreement":null},{"id":"W4223487095","doi":"10.1038/s41396-022-01223-w","title":"Glycoside hydrolase from the GH76 family indicates that marine Salegentibacter sp. Hel_I_6 consumes alpha-mannan from fungi","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Horizon 2020 Framework Programme; Max-Planck-Gesellschaft; Deutsche Forschungsgemeinschaft; Deutsches Elektronen-Synchrotron; European Commission; Newcastle University","keywords":"Biology; Marine fungi; Mannan; Glycoside hydrolase; Alpha (finance); Botany; Biochemistry; Enzyme; Polysaccharide","score_opus":0.01392178227359288,"score_gpt":0.21689920472742585,"score_spread":0.20297742245383296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223487095","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896515,0.0023775937,0.00019660483,0.0063448017,0.0009396505,0.00012364364,0.00017290059,0.000014669106,0.00017862003],"genre_scores_gemma":[0.9918847,0.0011254753,0.000069979185,0.003632416,0.0012531675,0.000014415017,0.0007081369,0.000027989054,0.0012837356],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874383,0.0002916266,0.00023745919,0.00024328391,0.00027213144,0.0002116523],"domain_scores_gemma":[0.99921507,0.000036551402,0.00025528792,0.00037637074,0.00004195319,0.000074785996],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033620134,0.00015994204,0.00012639441,0.000028129107,0.0006391122,0.0001239975,0.00049279816,0.000057268968,0.0013500383],"category_scores_gemma":[0.000027335667,0.000101589736,0.00012022244,0.00007396401,0.0000877806,0.000012868742,0.00040101787,0.00042218532,0.000040153685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018797739,0.00007374494,0.020837963,0.0000013293051,0.00022582443,0.00000892163,0.00034397515,0.00004561666,0.9518198,0.000012415944,0.02285548,0.0035869468],"study_design_scores_gemma":[0.0010062238,0.0001523828,0.20557141,0.000010898507,0.00014464902,0.0002081309,0.0011526031,0.000099527264,0.41032013,0.0008402899,0.3802009,0.0002928565],"about_ca_topic_score_codex":0.000114579816,"about_ca_topic_score_gemma":0.00002602879,"teacher_disagreement_score":0.5414997,"about_ca_system_score_codex":0.00002270563,"about_ca_system_score_gemma":0.00006400758,"threshold_uncertainty_score":0.99956286},"labels":[],"label_agreement":null},{"id":"W4223657123","doi":"10.1038/s41396-022-01233-8","title":"Active lithoautotrophic and methane-oxidizing microbial community in an anoxic, sub-zero, and hypersaline High Arctic spring","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Anoxic waters; Biology; Oxidizing agent; Spring (device); Microbial population biology; Methane; Arctic; Microbial ecology; Geomicrobiology; Ecology; Environmental chemistry; Oceanography; Bacteria; Environmental biotechnology; Paleontology","score_opus":0.016639133636640803,"score_gpt":0.22613690625649313,"score_spread":0.20949777261985233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223657123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839544,0.00030131498,0.00002702826,0.0009334771,0.00013792998,0.000113613234,0.000005050243,0.000008833011,0.00007729309],"genre_scores_gemma":[0.99884135,0.00022002115,0.00053265906,0.00029604335,0.000045242312,0.0000038660346,0.0000017116197,0.000016146347,0.000042965064],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99796015,0.0012040115,0.00021746082,0.00014368139,0.00020683982,0.00026786682],"domain_scores_gemma":[0.99941546,0.00013545695,0.00013388049,0.00018636177,0.0000055579826,0.000123314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017725222,0.00012890031,0.00017638486,0.00006177044,0.0008953506,0.000060161263,0.00027397528,0.000038127553,0.00047122588],"category_scores_gemma":[0.000023706993,0.00009323551,0.000028152948,0.00019417456,0.00018103553,0.00023470103,0.0005266587,0.0016052268,0.0000040254145],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025862764,0.0002463019,0.016644722,0.00001427793,0.000062887404,0.00007547031,0.014497736,0.019026628,0.9422557,0.00008766432,0.000029348528,0.006800657],"study_design_scores_gemma":[0.008992407,0.0027738984,0.85126865,0.00019218757,0.0004259883,0.0076556834,0.018366812,0.014790785,0.044850644,0.04581205,0.0030910925,0.001779827],"about_ca_topic_score_codex":0.0032408782,"about_ca_topic_score_gemma":0.00029314734,"teacher_disagreement_score":0.897405,"about_ca_system_score_codex":0.00019875771,"about_ca_system_score_gemma":0.000013147948,"threshold_uncertainty_score":0.6974001},"labels":[],"label_agreement":null},{"id":"W4224248164","doi":"10.1038/s41396-022-01227-6","title":"Correction: Experimental evaluation of ecological principles to understand and modulate the outcome of bacterial strain competition in gut microbiomes","year":2022,"lang":"en","type":"erratum","venue":"The ISME Journal","topic":"Economic and Environmental Valuation","field":"Economics, Econometrics and Finance","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Competition (biology); Microbiome; Ecology; Outcome (game theory); Microbial ecology; Strain (injury); Computational biology; Evolutionary biology; Bioinformatics; Bacteria; Genetics","score_opus":0.19237755828548103,"score_gpt":0.28094478887073876,"score_spread":0.08856723058525773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224248164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98318285,0.0011001688,0.00007434109,0.00085723,0.010333542,0.00043136935,0.0002357124,0.000002624851,0.0037821427],"genre_scores_gemma":[0.99663174,0.00029875568,0.000044511355,0.00007415149,0.0002816908,0.00001483293,0.0000926731,0.00001499472,0.00254666],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.9984841,0.0001733812,0.000908891,0.00019387317,0.00010561474,0.00013415393],"domain_scores_gemma":[0.9988123,0.00006667146,0.00090649445,0.00016788938,0.000015774796,0.000030829528],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0030446246,0.00013938053,0.00039080385,0.00017087138,0.00016389058,0.00004330819,0.00021750115,0.00011433733,0.004510398],"category_scores_gemma":[0.000059043756,0.00010859942,0.00009998086,0.00008205249,0.00010825082,0.00009468244,0.00013152183,0.0004158638,0.00000908518],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014875847,0.004409746,0.17132294,0.00045104066,0.0024509116,0.000014938984,0.07675714,0.3453964,0.01768907,0.067666225,0.3030887,0.009265316],"study_design_scores_gemma":[0.0025337886,0.0008359719,0.93131036,0.00009969633,0.00010843819,0.00011558877,0.009448573,0.02122186,0.0001522114,0.008985196,0.024722314,0.0004659777],"about_ca_topic_score_codex":0.000048464975,"about_ca_topic_score_gemma":0.000099386794,"teacher_disagreement_score":0.7599875,"about_ca_system_score_codex":0.0007308761,"about_ca_system_score_gemma":0.00004642355,"threshold_uncertainty_score":0.99639964},"labels":[],"label_agreement":null},{"id":"W4225271770","doi":"10.1038/s41396-022-01241-8","title":"Discovery of lignin-transforming bacteria and enzymes in thermophilic environments using stable isotope probing","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Government of Canada","keywords":"Biology; Thermophile; Lignin; Bacteria; Microbial ecology; Enzyme; Environmental biotechnology; Microbiology; Computational biology; Biotechnology; Biochemistry; Botany; Genetics","score_opus":0.018517069933848253,"score_gpt":0.20320961396723805,"score_spread":0.1846925440333898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225271770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989051,0.00040956962,0.000009301104,0.00042172807,0.00007200455,0.00012396842,0.000013771589,0.000002684726,0.00004183582],"genre_scores_gemma":[0.9996575,0.000106998035,0.000028082717,0.000043998654,0.00007161491,0.0000039047577,0.0000057584025,0.0000010564788,0.00008108103],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992069,0.00015066538,0.00020724036,0.00008743886,0.00019336154,0.00015437602],"domain_scores_gemma":[0.99973816,0.00007491431,0.00013247225,0.000027773394,0.000004451069,0.00002220302],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005558581,0.000068988345,0.000102526115,0.000016587994,0.00029922635,0.00005092047,0.00015520076,0.000020064494,0.00008441444],"category_scores_gemma":[0.000008403042,0.00002481168,0.000030158179,0.0001396327,0.000034542703,0.0003133889,0.00007536584,0.00021344837,3.3970758e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001742373,0.000033487726,0.0038093748,0.000001984935,0.000007202088,0.0000025683905,0.0005873984,0.0002577942,0.99272424,0.000035798126,0.000014595934,0.0025081194],"study_design_scores_gemma":[0.0011813336,0.00077655487,0.38327187,0.00017362641,0.00007763832,0.000548749,0.012602689,0.001891243,0.5911084,0.0033302582,0.0044731223,0.0005645251],"about_ca_topic_score_codex":0.00010671832,"about_ca_topic_score_gemma":0.000047000885,"teacher_disagreement_score":0.40161586,"about_ca_system_score_codex":0.00005099853,"about_ca_system_score_gemma":0.00000963402,"threshold_uncertainty_score":0.23014374},"labels":[],"label_agreement":null},{"id":"W4225538684","doi":"10.1038/s41396-022-01208-9","title":"Experimental evaluation of ecological principles to understand and modulate the outcome of bacterial strain competition in gut microbiomes","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Science Foundation Ireland","keywords":"Biology; Akkermansia muciniphila; Niche; Microbiome; Competition (biology); Competitive exclusion; Ecology; Strain (injury); Ecological niche; Microbial ecology; Microbiology; Intraspecific competition; Ecosystem; Habitat; Genetics; Bacteria","score_opus":0.06960091683647779,"score_gpt":0.3369757738407887,"score_spread":0.2673748570043109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225538684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983599,0.00021530037,0.000035583773,0.000993156,0.00011243475,0.0002015842,0.000043068383,6.3419134e-7,0.000038332466],"genre_scores_gemma":[0.99968463,0.000016678618,0.00008510473,0.00012460435,0.000047245474,0.000003398846,0.00001701654,0.000003751421,0.000017597324],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991581,0.0003100884,0.0002385025,0.00007773726,0.00012170889,0.00009390732],"domain_scores_gemma":[0.99971807,0.000011751239,0.00012645549,0.00008759913,0.000034032273,0.000022085773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012712738,0.00005292243,0.00009419726,0.000031828888,0.00012907782,0.000009888651,0.00011787405,0.000026630254,0.00016792443],"category_scores_gemma":[0.000016597298,0.000032777785,0.000033208908,0.00004241233,0.000057297595,0.000002154151,0.00012094901,0.000096095166,1.8884964e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000910743,0.00006677905,0.00059927715,0.000003808389,0.000012885005,2.7602078e-7,0.0007525235,0.0013048445,0.9968706,0.00013225591,0.000049481325,0.00011619308],"study_design_scores_gemma":[0.0061140633,0.0035788538,0.6107392,0.000039212664,0.00010281238,0.000589411,0.022031382,0.00100892,0.35055935,0.0010259749,0.0038752663,0.00033558492],"about_ca_topic_score_codex":0.000008512726,"about_ca_topic_score_gemma":0.000047763933,"teacher_disagreement_score":0.6463113,"about_ca_system_score_codex":0.000053998254,"about_ca_system_score_gemma":0.00007163489,"threshold_uncertainty_score":0.18386547},"labels":[],"label_agreement":null},{"id":"W4226147673","doi":"10.1038/s41396-022-01228-5","title":"Abiotic factors modulate interspecies competition mediated by the type VI secretion system effectors in <i>Vibrio cholerae</i>","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Vibrio cholerae; Effector; Type VI secretion system; Biology; Microbiology; Abiotic component; Escherichia coli; Competition (biology); Mutant; Virulence; Cell biology; Genetics; Gene; Ecology; Bacteria","score_opus":0.009780016806277709,"score_gpt":0.2372490166892479,"score_spread":0.22746899988297017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226147673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99653065,0.0007565291,0.00006904827,0.0016696173,0.0005632456,0.00022246237,0.000037922975,0.0000113911765,0.00013910454],"genre_scores_gemma":[0.99909735,0.0002697884,0.0000034993357,0.0001225049,0.00018995533,0.000012704649,0.00010613406,0.000018026292,0.00018004449],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99834985,0.0006653842,0.00022918839,0.00015838072,0.00032609006,0.00027108303],"domain_scores_gemma":[0.99946135,0.000064710286,0.00013638895,0.00021522059,0.000070192604,0.00005213377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007763649,0.00014134933,0.0001513593,0.000050734907,0.0005275188,0.00008387909,0.00038995544,0.000043647346,0.00006832262],"category_scores_gemma":[0.000101947706,0.00008217635,0.00008209226,0.00018491354,0.000117764495,0.000007878406,0.00030126286,0.00046721427,0.000007548752],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018261938,0.000041024046,0.0028466259,0.000018504847,0.00012764499,0.000006030327,0.0009900013,0.00057935563,0.9892615,0.0000324403,0.0057956753,0.00011856474],"study_design_scores_gemma":[0.011840646,0.00898025,0.40004912,0.0006336327,0.00035028424,0.0025605282,0.055643234,0.014111206,0.25823754,0.0004195079,0.24459624,0.0025777924],"about_ca_topic_score_codex":0.00005668478,"about_ca_topic_score_gemma":0.000028300004,"teacher_disagreement_score":0.73102397,"about_ca_system_score_codex":0.0001969179,"about_ca_system_score_gemma":0.000051891264,"threshold_uncertainty_score":0.40573013},"labels":[],"label_agreement":null},{"id":"W4240288849","doi":"10.1038/s41396-019-0384-1","title":"Correction: Long-term in situ permafrost thaw effects on bacterial communities and potential aerobic respiration","year":2019,"lang":"en","type":"erratum","venue":"The ISME Journal","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Impact","funders":"","keywords":"Biology; Citation; Term (time); In situ; Respiration; Information retrieval; Permafrost; Ecology; Library science; Botany; Computer science","score_opus":0.025347521066026186,"score_gpt":0.24017324772662238,"score_spread":0.21482572666059618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4240288849","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8773502,0.0018349821,0.0000043415967,0.0009313005,0.10486836,0.00038559912,0.0009864295,0.000019119629,0.013619656],"genre_scores_gemma":[0.89516467,0.010117888,0.0000035589276,0.001864974,0.024362165,0.0000029181942,0.021780984,0.000041982235,0.046660863],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.998136,0.0005863196,0.00034245552,0.00017443224,0.00039172338,0.0003690584],"domain_scores_gemma":[0.9989253,0.0003613261,0.00027834642,0.00028612735,0.000048055164,0.00010081141],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00057651644,0.00031283963,0.0003885162,0.00021817232,0.00051699684,0.00062059273,0.00037528656,0.00033573236,0.005998022],"category_scores_gemma":[0.000020398551,0.0002096107,0.000106484404,0.000107188534,0.00011673207,0.00028402184,0.000039921633,0.0020132267,0.0002656093],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007421537,0.00004177219,0.15191035,0.00021858075,0.000074221054,0.00021478347,0.004242188,0.00017808883,0.00086793053,0.0000016223161,0.82988584,0.011622477],"study_design_scores_gemma":[0.00086071214,0.00075921544,0.97836083,0.0010523984,0.00008050377,0.0011148193,0.0005051148,0.00036101637,0.000057692803,0.00003470411,0.016446242,0.00036672302],"about_ca_topic_score_codex":0.0012743559,"about_ca_topic_score_gemma":0.072231404,"teacher_disagreement_score":0.8264505,"about_ca_system_score_codex":0.000020475956,"about_ca_system_score_gemma":0.00009803031,"threshold_uncertainty_score":0.99491066},"labels":[],"label_agreement":null},{"id":"W4280580007","doi":"10.1038/s41396-022-01247-2","title":"Adaptation of gut microbiome and host metabolic systems to lignocellulosic degradation in bamboo rats","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Higher Education Discipline Innovation Project; National Natural Science Foundation of China","keywords":"Biology; Adaptation (eye); Host (biology); Bamboo; Gut microbiome; Microbiome; Microbiology; Biotechnology; Ecology; Bioinformatics; Neuroscience","score_opus":0.015055425569846891,"score_gpt":0.2439579575432745,"score_spread":0.2289025319734276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280580007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938519,0.0045878687,0.000473816,0.00066173665,0.0002005231,0.00017062259,0.000020418442,0.0000015218562,0.00003159859],"genre_scores_gemma":[0.9987958,0.00040621756,0.00016264936,0.00020027271,0.00009878407,0.0000073550427,0.000017237368,0.000008965204,0.00030271406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927056,0.00017489128,0.00023363564,0.00010350848,0.000083238374,0.00013418919],"domain_scores_gemma":[0.9996576,0.000008300257,0.00013506884,0.00011011949,0.000042694584,0.000046224006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005443363,0.000068641384,0.000115616436,0.000091608505,0.00015822747,0.000021806816,0.00012586416,0.000030573276,0.000012746068],"category_scores_gemma":[0.000010939837,0.000054312113,0.000029548733,0.00012852922,0.000019641353,0.0000036671884,0.000077309094,0.0001339876,0.0000016299737],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038891052,0.00002587178,0.00061870227,0.00001090388,0.000014178129,0.0000010758928,0.00043687262,0.0006525713,0.9967045,0.000062385094,0.00088059914,0.00055344426],"study_design_scores_gemma":[0.0042311815,0.0025018365,0.17698133,0.0001609857,0.00018521705,0.0027849039,0.013536407,0.0019617018,0.5971906,0.00015371469,0.19944173,0.0008703721],"about_ca_topic_score_codex":0.00011671218,"about_ca_topic_score_gemma":0.00005036931,"teacher_disagreement_score":0.3995139,"about_ca_system_score_codex":0.00002128324,"about_ca_system_score_gemma":0.000094542134,"threshold_uncertainty_score":0.22147837},"labels":[],"label_agreement":null},{"id":"W4283011420","doi":"10.1038/s41396-022-01261-4","title":"Endosymbiont population genomics sheds light on transmission mode, partner specificity, and stability of the scaly-foot snail holobiont","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Japan Agency for Marine-Earth Science and Technology; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Hong Kong University of Science and Technology; China Ocean Mineral Resources Research and Development Association; National Natural Science Foundation of China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)","keywords":"Biology; Holobiont; Snail; Transmission (telecommunications); Population genomics; Population; Genomics; Evolutionary biology; Ecology; Genetics; Genome; Gene; Bacteria; Symbiosis; Environmental health","score_opus":0.020515102366976786,"score_gpt":0.29044534647132425,"score_spread":0.26993024410434746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283011420","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925914,0.000030182882,0.00017207781,0.0039416063,0.0002450039,0.00012188111,0.000013955297,0.000004646492,0.0028792545],"genre_scores_gemma":[0.99944305,0.000035590267,0.00004696609,0.00014971908,0.000044847748,0.0000036089452,0.0000019844695,0.000004338919,0.0002698993],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99903286,0.00030189738,0.00021357235,0.000120692916,0.00020957383,0.00012139687],"domain_scores_gemma":[0.99957293,0.000054986118,0.0001406083,0.0001796264,0.000005355663,0.000046520585],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00052102096,0.000075625474,0.00009082177,0.00001659559,0.00083060603,0.00001502794,0.00022961732,0.00003226514,0.0024542098],"category_scores_gemma":[0.000009819217,0.000040554347,0.000077844285,0.00007623371,0.0001067654,0.0000689266,0.00012111059,0.000404438,0.000010451575],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006117537,0.00060878886,0.5734257,0.000003977042,0.000051933275,0.000003368674,0.0040426548,0.014737175,0.38121352,0.0008584534,0.0018073528,0.02263531],"study_design_scores_gemma":[0.00022373241,0.00014782492,0.95718336,0.000005139706,0.000024962472,0.0001423431,0.00022657753,0.0015025128,0.017316716,0.0022280058,0.02091947,0.00007936133],"about_ca_topic_score_codex":0.00010636434,"about_ca_topic_score_gemma":0.00005584707,"teacher_disagreement_score":0.38375765,"about_ca_system_score_codex":0.00020172953,"about_ca_system_score_gemma":0.000009411397,"threshold_uncertainty_score":0.9984577},"labels":[],"label_agreement":null},{"id":"W4283703462","doi":"10.1038/s41396-022-01270-3","title":"Priority effects shape the structure of infant-type <i>Bifidobacterium</i> communities on human milk oligosaccharides","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Diabetes and Digestive and Kidney Diseases; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Lady Davis Fellowship Trust, Hebrew University of Jerusalem; Science Foundation Ireland; U.S. Department of Health and Human Services","keywords":"Biology; Bifidobacterium; Bifidobacterium bifidum; Bifidobacterium breve; Bifidobacterium longum; Infant formula; Dominance (genetics); Gut flora; Food science; Microbiology; Immunology; Lactobacillus; Genetics; Fermentation","score_opus":0.01553643243209666,"score_gpt":0.2771984398114095,"score_spread":0.26166200737931283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283703462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978618,0.0006105166,0.000002945071,0.00080892764,0.00040916182,0.00014780812,0.000045084067,0.0000040070713,0.00010976009],"genre_scores_gemma":[0.99754906,0.0001924931,0.000022832452,0.0018057625,0.00028204327,0.000001467127,0.00003274093,0.000013970239,0.000099659286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890214,0.00044401328,0.00020706888,0.00008129442,0.00016167827,0.00020381849],"domain_scores_gemma":[0.9992569,0.00004607744,0.00019954074,0.00039011924,0.00006598361,0.000041362953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040159345,0.00012126055,0.00014686857,0.00002881896,0.0011221893,0.00003473122,0.0006036099,0.000053239026,0.000167829],"category_scores_gemma":[0.000017203065,0.000070340546,0.00008591722,0.00007423108,0.00012375695,0.00000299949,0.0002727649,0.0006768531,0.0000013249588],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009442417,0.000035305817,0.0014645306,0.000023028784,0.00005411175,0.0000014546868,0.0010568965,0.00006536322,0.9926955,0.00012718665,0.0040803864,0.00030177584],"study_design_scores_gemma":[0.0018064443,0.0040279427,0.14281818,0.000088625515,0.00014482556,0.0012140764,0.0037524388,0.00003848296,0.7610661,0.0018077259,0.08276282,0.00047234542],"about_ca_topic_score_codex":0.000098835495,"about_ca_topic_score_gemma":0.00009074348,"teacher_disagreement_score":0.23162946,"about_ca_system_score_codex":0.000022772372,"about_ca_system_score_gemma":0.00011431976,"threshold_uncertainty_score":0.86310863},"labels":[],"label_agreement":null},{"id":"W4284975309","doi":"10.1038/s41396-022-01281-0","title":"Expanding the phylogenetic distribution of cytochrome <i>b</i>-containing methanogenic archaea sheds light on the evolution of methanogenesis","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Science Fund for Distinguished Young Scholars; Helmholtz-Zentrum Potsdam - Deutsches GeoForschungsZentrum GFZ; National Natural Science Foundation of China; Deutsche Forschungsgemeinschaft; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Archaea; Biology; Methanogenesis; Anoxic waters; Euryarchaeota; Phylum; Methanomicrobiales; Thermophile; Phylogenetics; Horizontal gene transfer; Crenarchaeota; Methanosarcina; Biochemistry; Ecology; Bacteria; Gene; Genetics","score_opus":0.013251058921988655,"score_gpt":0.22751793796770395,"score_spread":0.21426687904571529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4284975309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935913,0.000933124,0.0015453773,0.0022744767,0.00022920112,0.00026443193,0.000019043333,0.0000063311813,0.0011367048],"genre_scores_gemma":[0.9994468,0.00011406275,0.000042098094,0.000106357526,0.00008170524,0.000027864964,0.000002780251,0.000014865447,0.00016344062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99712133,0.0011709876,0.00045961057,0.00016525589,0.0007786032,0.00030423305],"domain_scores_gemma":[0.9985634,0.0004329598,0.00053651136,0.00039306725,0.000018100853,0.00005594071],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0037596202,0.00015075518,0.00021129908,0.00004516196,0.0010394832,0.000017684095,0.0008192159,0.000038579372,0.0023382634],"category_scores_gemma":[0.00006935766,0.00006893192,0.0002116545,0.0005949239,0.00026332994,0.000051523955,0.00040341803,0.0005690229,0.00001448872],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020293113,0.0001212381,0.0031424477,0.000007023091,0.00024948706,0.000004498429,0.004138412,0.08939826,0.8978363,0.001556462,0.0003731916,0.0029697446],"study_design_scores_gemma":[0.0027553895,0.0043798694,0.157382,0.00017671277,0.0013963032,0.0013804865,0.025794499,0.011573368,0.72217953,0.062815465,0.009092933,0.0010734316],"about_ca_topic_score_codex":0.00013156518,"about_ca_topic_score_gemma":0.000007098298,"teacher_disagreement_score":0.17565677,"about_ca_system_score_codex":0.0004334065,"about_ca_system_score_gemma":0.00004223022,"threshold_uncertainty_score":0.9985737},"labels":[],"label_agreement":null},{"id":"W4286685040","doi":"10.1038/s41396-022-01293-w","title":"Acquisition and evolution of enhanced mutualism—an underappreciated mechanism for invasive success?","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant Parasitism and Resistance","field":"Agricultural and Biological Sciences","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Education, India; China Scholarship Council; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Max-Planck-Gesellschaft; Université Laval; Deutscher Akademischer Austauschdienst; Office of Experimental Program to Stimulate Competitive Research; National Science Foundation; MPG Ranch","keywords":"Biology; Mutualism (biology); Mechanism (biology); Evolutionary biology; Ecology; Computational biology; Epistemology","score_opus":0.015626354943947016,"score_gpt":0.22492795988845699,"score_spread":0.20930160494450997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4286685040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99773103,0.0001886344,0.0005826414,0.0010287822,0.00013743926,0.00012960211,0.00012633148,0.000008917032,0.00006662596],"genre_scores_gemma":[0.9994396,0.00009309162,0.000045952846,0.00014227685,0.00014058461,0.000011665285,0.000028344135,5.4127673e-7,0.000097944096],"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.99932796,0.00014868601,0.00014277427,0.0000900065,0.00016639847,0.00012415255],"domain_scores_gemma":[0.99954516,0.00015942422,0.00016836167,0.000024047098,0.00006283826,0.000040168914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035488853,0.000056419536,0.00009256675,0.000010172452,0.0007322604,0.000032131553,0.0001730571,0.000025524556,0.00011616958],"category_scores_gemma":[0.000015146532,0.000019794248,0.000040459126,0.000104223145,0.000031744505,0.00011934543,0.000034341258,0.000103069804,3.9985736e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011035205,0.0000377745,0.0001110428,0.0000034143886,0.00001394375,0.0000013015764,0.00023953438,0.00005108648,0.99141055,0.0062895287,0.00019278066,0.0015387047],"study_design_scores_gemma":[0.001826251,0.0034653754,0.32900915,0.00010236817,0.0001400997,0.0008150551,0.014634497,0.0012461976,0.25369725,0.3937139,0.0007743764,0.00057551044],"about_ca_topic_score_codex":0.000049352497,"about_ca_topic_score_gemma":0.00020685958,"teacher_disagreement_score":0.7377133,"about_ca_system_score_codex":0.0000352293,"about_ca_system_score_gemma":0.000014927343,"threshold_uncertainty_score":0.5632029},"labels":[],"label_agreement":null},{"id":"W4288424531","doi":"10.1038/s41396-022-01296-7","title":"Microbiome of the freshwater sponge <i>Ephydatia muelleri</i> shares compositional and functional similarities with those of marine sponges","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine Sponges and Natural Products","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; McGill University; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; German Network for Bioinformatics Infrastructure; Directorate for Biological Sciences; Bundesministerium für Bildung und Forschung; University of Alberta; Government of Canada","keywords":"Biology; Metagenomics; Sponge; Microbiome; Ecology; Shotgun sequencing; Microbial ecology; Pyrosequencing; Zoology; Genome; Genetics; Bacteria; Gene; Botany","score_opus":0.007933498216617022,"score_gpt":0.19375237032170906,"score_spread":0.18581887210509204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4288424531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99551934,0.001056644,0.000009254433,0.002683884,0.00016044194,0.000095894204,0.00021565348,0.0000017681557,0.00025712437],"genre_scores_gemma":[0.99761873,0.00015862579,0.00026296533,0.00035191933,0.00020111252,0.000003450252,0.0000839569,0.00001042951,0.0013088319],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992573,0.000117590964,0.00017461374,0.00012084763,0.00021281409,0.00011679669],"domain_scores_gemma":[0.9995069,0.000019753414,0.00016434256,0.00018322114,0.00009984555,0.000025932763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029671128,0.00010090992,0.000115584284,0.000032498534,0.00028556824,0.000015071724,0.00021648438,0.000026241192,0.0005508617],"category_scores_gemma":[0.000010237748,0.000052754953,0.00006673073,0.000075737276,0.00020718799,0.000005831221,0.00052764965,0.00023262858,1.8716304e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012088255,0.00011014793,0.010083438,0.00004336586,0.00019352381,0.0000045285337,0.00012875335,0.00052991125,0.9716598,0.00025832382,0.014861072,0.00091831153],"study_design_scores_gemma":[0.0025913578,0.0016184401,0.2777143,0.000066168075,0.00018967346,0.004497965,0.0006006061,0.00010859142,0.53920066,0.0017778497,0.17119443,0.00043991246],"about_ca_topic_score_codex":0.000025470605,"about_ca_topic_score_gemma":0.000056662928,"teacher_disagreement_score":0.43245912,"about_ca_system_score_codex":0.000007448121,"about_ca_system_score_gemma":0.000056385717,"threshold_uncertainty_score":0.60315496},"labels":[],"label_agreement":null},{"id":"W4297183131","doi":"10.1038/s41396-022-01321-9","title":"Gastric acid and escape to systemic circulation represent major bottlenecks to host infection by <i>Citrobacter rodentium</i>","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; Host (biology); Citrobacter; Microbiology; Ecology; Enterobacteriaceae; Escherichia coli; Pathogen; Genetics; Gene","score_opus":0.005909849005387527,"score_gpt":0.23298375135152705,"score_spread":0.22707390234613953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4297183131","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928312,0.0006411842,0.003692757,0.002090227,0.00037605476,0.00026491584,0.000023127914,0.000006805948,0.00007373823],"genre_scores_gemma":[0.9974901,0.00014332314,0.00009567723,0.0013877818,0.0003228805,0.000019963301,0.000023630644,0.000016420601,0.0005001861],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901706,0.00017249156,0.00022041872,0.00020785893,0.00015057517,0.00023161616],"domain_scores_gemma":[0.9994748,0.000005353088,0.00010855646,0.00021396394,0.00005356193,0.00014371682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004755776,0.00010384575,0.000106034866,0.00006964045,0.00046125174,0.00007399533,0.00013713572,0.0000447213,0.0000589846],"category_scores_gemma":[0.000021602038,0.00008485526,0.00005486672,0.00013872905,0.000011439695,0.000005511331,0.00019992475,0.00022061824,0.00001289705],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057817597,0.000024036932,0.006982066,0.000009077078,0.000024029281,0.0000012725222,0.00013742816,0.0003483282,0.9662116,0.0000027523356,0.025752733,0.00044885106],"study_design_scores_gemma":[0.0036512434,0.0029394971,0.5380822,0.00014234097,0.0002750986,0.01514831,0.0010415302,0.00018414682,0.2049387,0.000119778604,0.23230697,0.0011702125],"about_ca_topic_score_codex":0.000053885207,"about_ca_topic_score_gemma":0.000016173326,"teacher_disagreement_score":0.7612729,"about_ca_system_score_codex":0.00007924874,"about_ca_system_score_gemma":0.000056951765,"threshold_uncertainty_score":0.35476223},"labels":[],"label_agreement":null},{"id":"W4303647440","doi":"10.1038/s41396-022-01327-3","title":"Mortality by ribosomal sequencing (MoRS) provides a window into taxon-specific cell lysis","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada; University of British Columbia","funders":"British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation; Government of Canada; Ministry of Technology, Innovation and Citizens' Services; Tula Foundation; Gordon and Betty Moore Foundation","keywords":"Biology; Ribosomal RNA; Taxon; Pyrosequencing; Prochlorococcus; Lysis; Ecology; Botany; Synechococcus; Zoology; Cyanobacteria; Bacteria; Genetics; Gene; Molecular biology","score_opus":0.013571002920320444,"score_gpt":0.22284296619220928,"score_spread":0.20927196327188885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4303647440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99477625,0.00013861973,0.00040403823,0.0014255346,0.00041208643,0.00013320078,0.000026201305,0.00001990577,0.0026641893],"genre_scores_gemma":[0.9965131,0.00005761815,0.00037390806,0.00051286357,0.00015423857,0.00001744578,0.0000044735434,0.000015254809,0.002351083],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.998741,0.00020187197,0.0002739648,0.00018929571,0.00031606396,0.00027782292],"domain_scores_gemma":[0.9994055,0.000035039768,0.00021451713,0.00023647278,0.0000079076535,0.00010056852],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00050635857,0.00012853344,0.00012796045,0.00002609061,0.0014030772,0.00015640959,0.0004720559,0.000024003579,0.015372434],"category_scores_gemma":[0.000006341052,0.000094423434,0.00014187612,0.0001920828,0.000121284196,0.0003267826,0.00036305576,0.00066211313,0.00019166946],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014355244,0.000074177784,0.0015564027,0.0000019954111,0.000021779097,0.000021550193,0.0014800826,0.0012566905,0.9623732,0.0000054300967,0.031112408,0.0020819097],"study_design_scores_gemma":[0.0009101038,0.00034601605,0.059140377,0.000020570993,0.00015315987,0.0018765102,0.007665204,0.0005829262,0.10490353,0.00095386367,0.82275945,0.00068829686],"about_ca_topic_score_codex":0.0011586463,"about_ca_topic_score_gemma":0.00012118043,"teacher_disagreement_score":0.8574697,"about_ca_system_score_codex":0.0007424451,"about_ca_system_score_gemma":0.000034191995,"threshold_uncertainty_score":0.99989694},"labels":[],"label_agreement":null},{"id":"W4310062946","doi":"10.1038/s41396-022-01343-3","title":"The ColR/S two-component system is a conserved determinant of host association across <i>Pseudomonas</i> species","year":2022,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Killam Trusts; National Science Foundation; Government of Canada; Michael Smith Health Research BC","keywords":"Biology; Host (biology); Component (thermodynamics); Association (psychology); Pseudomonas; Pseudomonas aeruginosa; Ecology; Genetics; Evolutionary biology; Bacteria; Epistemology","score_opus":0.017894312889610738,"score_gpt":0.21395741108852837,"score_spread":0.19606309819891762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310062946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905066,0.00044752593,5.138427e-7,0.007566608,0.0006117026,0.00015369123,0.00049518305,0.00001526209,0.00020291822],"genre_scores_gemma":[0.99843335,0.00021656256,0.0000057039,0.00020671729,0.00026812308,0.00001711998,0.0000042861457,9.053654e-7,0.00084724603],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982672,0.00044944196,0.00036400353,0.000105819156,0.00049685006,0.00031672526],"domain_scores_gemma":[0.99842125,0.00077731034,0.00060310116,0.00006271894,0.00009580762,0.000039836552],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0019339778,0.00010678132,0.0002079284,0.000003955334,0.002660979,0.0001280499,0.0005421211,0.000024103569,0.0000699929],"category_scores_gemma":[0.000049940125,0.000029522736,0.0001565001,0.00015251429,0.00007689502,0.0000493432,0.00031047346,0.0002723147,0.0000074785985],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000093682625,0.000040905597,0.009850034,0.0000039205065,0.00009573873,0.000016547108,0.0011104498,0.0000037647521,0.9814849,0.00007982494,0.005696919,0.0015233227],"study_design_scores_gemma":[0.00075215375,0.00041897537,0.76140743,0.00006000241,0.00009476771,0.0011536331,0.025843838,0.00014173155,0.031050293,0.00011963664,0.17867313,0.00028440956],"about_ca_topic_score_codex":0.00009677446,"about_ca_topic_score_gemma":0.00029478996,"teacher_disagreement_score":0.9504346,"about_ca_system_score_codex":0.0002008352,"about_ca_system_score_gemma":0.000016161888,"threshold_uncertainty_score":0.99863744},"labels":[],"label_agreement":null},{"id":"W4315645017","doi":"10.1038/s41396-023-01358-4","title":"CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Danish Agency for Science and Higher Education; Canadian Institutes of Health Research; Danmarks Frie Forskningsfond; Ministeriet for Forskning Innovation og Videregående Uddannelser; Canada Research Chairs","keywords":"Biology; Microbiology; Bacteria; Immunity; CRISPR; Virology; Phage therapy; Bacteriophage; Immunology; Immune system; Escherichia coli; Genetics","score_opus":0.014274829616702612,"score_gpt":0.31281772679256836,"score_spread":0.29854289717586574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4315645017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941723,0.00055329065,0.003056838,0.0015402484,0.0002980243,0.00022626726,0.000006779143,0.00001782581,0.00012847387],"genre_scores_gemma":[0.9978933,0.00034219402,0.00025553108,0.0002845806,0.00032452922,0.000012815475,0.000010332435,0.000023143255,0.00085359666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904156,0.00011914449,0.00023917189,0.00015159082,0.00012769885,0.00032085995],"domain_scores_gemma":[0.99948454,0.000030334706,0.00004930515,0.00028506664,0.00005044986,0.00010028472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068711827,0.00013504548,0.000120789664,0.000099150195,0.00010585081,0.00006035482,0.00033156533,0.0000703688,0.000029281971],"category_scores_gemma":[0.00017625296,0.000101717524,0.000082107494,0.00023175486,0.000023913188,0.0000042556508,0.00017907356,0.00025932328,0.00004802965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051695988,0.000033691136,0.00064895774,0.00002519827,0.00003286457,0.000015515418,0.0005768546,0.0027255807,0.99026424,0.000001847019,0.0032939415,0.0023296007],"study_design_scores_gemma":[0.0011019879,0.00051490654,0.244156,0.00014912576,0.000057526497,0.00043225905,0.00095159066,0.0018149597,0.7204801,0.00010005191,0.029793644,0.00044789122],"about_ca_topic_score_codex":0.000022177126,"about_ca_topic_score_gemma":0.00003998075,"teacher_disagreement_score":0.26978418,"about_ca_system_score_codex":0.000026957558,"about_ca_system_score_gemma":0.000048784907,"threshold_uncertainty_score":0.41479203},"labels":[],"label_agreement":null},{"id":"W4316814952","doi":"10.1038/s41396-023-01359-3","title":"Evolution of snow algae, from cosmopolitans to endemics, revealed by DNA analysis of ancient ice","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Russian Academy of Sciences; Research Institute for Humanity and Nature; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; National Institute of Polar Research; Institute for Fermentation, Osaka","keywords":"Biology; Endemism; Microevolution; Phylotype; Ecology; Biological dispersal; Biogeography; Cosmopolitan distribution; Green algae; Algae; Phylogenetics; Population","score_opus":0.012038919541747588,"score_gpt":0.24480350373768114,"score_spread":0.23276458419593354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4316814952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786216,0.000051431558,0.00056593557,0.00064016134,0.0001087992,0.00005979728,0.00012669773,0.000006611602,0.0005784351],"genre_scores_gemma":[0.9991493,0.000045301873,0.00009940368,0.0004070328,0.000022612452,0.0000010305419,0.000026872242,0.0000037564782,0.00024468175],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99895203,0.00036227616,0.00027472954,0.000089086905,0.00013280746,0.00018908331],"domain_scores_gemma":[0.99918085,0.0002723305,0.00019876826,0.00026651064,0.000017239196,0.0000643169],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00083066616,0.00006631764,0.00022773498,0.00008682234,0.00017679238,0.0000035374717,0.00046378674,0.000059475344,0.0024733762],"category_scores_gemma":[0.00009218513,0.00004966535,0.00010852345,0.00084910763,0.00018240603,0.000045805136,0.00020259884,0.00023526853,0.00011149046],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056850782,0.00007893387,0.048326105,0.000001696957,0.0002681014,9.012593e-7,0.0021122973,0.007405165,0.7986706,0.00009963533,0.14264293,0.00033679474],"study_design_scores_gemma":[0.00021568622,0.00013297317,0.98046225,0.00001189735,0.0003365789,0.0000053377635,0.00075622415,0.0014528065,0.00788585,0.0050000264,0.0036403888,0.000100003774],"about_ca_topic_score_codex":0.0016941591,"about_ca_topic_score_gemma":0.001468996,"teacher_disagreement_score":0.9321361,"about_ca_system_score_codex":0.00015757789,"about_ca_system_score_gemma":0.000016456117,"threshold_uncertainty_score":0.9984385},"labels":[],"label_agreement":null},{"id":"W4319298576","doi":"10.1038/s41396-023-01365-5","title":"Rapid diversification underlying the global dominance of a cosmopolitan phytoplankton","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Marine and coastal ecosystems","field":"Earth and Planetary Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Rimouski","funders":"Agence Nationale de la Recherche; Natural Environment Research Council; European Commission; Sight Research UK","keywords":"Biology; Diversification (marketing strategy); Phytoplankton; Dominance (genetics); Cosmopolitan distribution; Ecology; Evolutionary biology; Genetics; Nutrient; Gene","score_opus":0.04318715310858276,"score_gpt":0.24825555741532154,"score_spread":0.20506840430673878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319298576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9699132,0.0005398283,0.00012398302,0.002319101,0.00053907454,0.00010279765,0.00005399471,0.000018190956,0.026389856],"genre_scores_gemma":[0.9990987,0.00028471212,0.000010849348,0.00008773465,0.00011061542,2.7676543e-7,0.0000074220843,0.0000010097617,0.00039866057],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9992739,0.00010332038,0.00016530554,0.00006242778,0.00022729945,0.00016774531],"domain_scores_gemma":[0.999535,0.000108654705,0.0001496763,0.00013691337,0.000030258021,0.000039471295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069371745,0.000056720048,0.00008461338,0.000021448297,0.00035396015,0.00005340337,0.0003207578,0.000019552039,0.0003371524],"category_scores_gemma":[0.0000217455,0.000028128141,0.00005650071,0.00029875274,0.000059367012,0.00009921499,0.000018255885,0.00011980315,0.00013315163],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018625552,0.000022579752,0.38888398,0.000056358105,0.00012615582,0.000032967964,0.0017568873,0.0027221362,0.00010501341,0.003296909,0.03766516,0.5651456],"study_design_scores_gemma":[0.00027507418,0.00010717477,0.9490317,0.000032023756,0.000024994077,0.00021177741,0.002931233,0.008961386,0.00003548418,0.020912664,0.017392779,0.00008367186],"about_ca_topic_score_codex":0.0007066777,"about_ca_topic_score_gemma":0.0006371054,"teacher_disagreement_score":0.5650619,"about_ca_system_score_codex":0.0000073809806,"about_ca_system_score_gemma":0.00004139856,"threshold_uncertainty_score":0.3691582},"labels":[],"label_agreement":null},{"id":"W4362522945","doi":"10.1038/s41396-023-01397-x","title":"Replicated life-history patterns and subsurface origins of the bacterial sister phyla <i>Nitrospirota</i> and <i>Nitrospinota</i>","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Park Service; Global Affairs Canada; Center for Dark Energy Biosphere Investigations; Nuclear Safety and Security Commission; National Science Foundation; Government of Canada; NASA Astrobiology Institute; National Aeronautics and Space Administration","keywords":"Phylum; Biology; Clade; Phylogenomics; Evolutionary biology; Phylogenetics; Ecology; Gene; Genetics","score_opus":0.016105474780093006,"score_gpt":0.19966723558101163,"score_spread":0.18356176080091863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362522945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99738944,0.00013857348,0.0000051801953,0.0015284937,0.00040261197,0.00018874471,0.00001691129,0.000025950678,0.00030408014],"genre_scores_gemma":[0.9983983,0.00017625149,0.00010765107,0.0003382768,0.000149284,0.000005114594,0.0000026231476,0.000021482389,0.0008010307],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987331,0.0001437926,0.00027955772,0.0002139,0.00033502164,0.00029460058],"domain_scores_gemma":[0.9992675,0.000049536528,0.00020740536,0.00032891092,0.000010821169,0.00013583296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041837845,0.0001771847,0.00019476899,0.000024303175,0.00028543064,0.00005395702,0.00031491322,0.000055932305,0.00036886372],"category_scores_gemma":[0.000015288644,0.0000941643,0.00009482417,0.0001492698,0.0003603299,0.00014860246,0.00031715818,0.00024132448,0.000058638714],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016763374,0.000102496866,0.35655063,0.000021773489,0.00013418739,0.000024279052,0.0021037743,0.000052058163,0.62630445,0.00005075538,0.012838573,0.0016493828],"study_design_scores_gemma":[0.0017346954,0.00020485264,0.8961834,0.00004532882,0.00017563201,0.0003933673,0.00021672617,0.00019782191,0.04154028,0.0004142999,0.058594197,0.00029944157],"about_ca_topic_score_codex":0.0002743089,"about_ca_topic_score_gemma":0.000050378156,"teacher_disagreement_score":0.5847642,"about_ca_system_score_codex":0.00017543886,"about_ca_system_score_gemma":0.000024677314,"threshold_uncertainty_score":0.4038799},"labels":[],"label_agreement":null},{"id":"W4362733300","doi":"10.1038/s41396-023-01406-z","title":"Plant pathogen resistance is mediated by recruitment of specific rhizosphere fungi","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Fundamental Research Funds for the Central Universities; China Postdoctoral Science Foundation; National Natural Science Foundation of China","keywords":"Biology; Rhizosphere; Pathogen; Plant disease resistance; Botany; Plant defense against herbivory; Trichoderma; Resistance (ecology); Plant disease; Microorganism; Biotechnology; Microbiology; Bacteria; Ecology; Biochemistry; Gene","score_opus":0.05682788673389997,"score_gpt":0.2438379104840614,"score_spread":0.18701002375016143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362733300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99226576,0.0013440588,0.000001644151,0.0041434537,0.00025306034,0.00010122565,0.00092559366,0.000023197874,0.00094197795],"genre_scores_gemma":[0.9854243,0.007434432,0.000033377408,0.00030185445,0.000246617,0.0000065634886,0.00019805851,0.0000014992307,0.006353302],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99920654,0.00010890856,0.00023700969,0.00008251333,0.0001779041,0.00018712203],"domain_scores_gemma":[0.99943435,0.0002394665,0.00016630923,0.0000578076,0.0000492244,0.000052826726],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004079275,0.00008044255,0.00011798938,0.0000074889904,0.00030208813,0.00004972913,0.00030760549,0.00004117366,0.0014118365],"category_scores_gemma":[0.000016137332,0.00002414859,0.00007965498,0.0002622031,0.00003381009,0.000068681955,0.000044053926,0.00023561041,0.00017078978],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003514444,0.000026388212,0.0001401701,0.0000010795593,0.000017311433,0.0000057564303,0.00012841143,7.541181e-7,0.7004883,0.000013938278,0.29390866,0.005234033],"study_design_scores_gemma":[0.00011158038,0.00009552255,0.024109788,0.000065825756,0.00000924604,0.00008208771,0.0011127635,0.000016603368,0.025504434,0.0003442617,0.94844997,0.00009790211],"about_ca_topic_score_codex":0.00004824234,"about_ca_topic_score_gemma":0.00011312626,"teacher_disagreement_score":0.6749839,"about_ca_system_score_codex":0.000024958617,"about_ca_system_score_gemma":0.0000072847,"threshold_uncertainty_score":0.999501},"labels":[],"label_agreement":null},{"id":"W4364361789","doi":"10.1038/s41396-023-01405-0","title":"Thermophilic <i>Dehalococcoidia</i> with unusual traits shed light on an unexpected past","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Lawrence Livermore National Laboratory; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; National Science Foundation; Government of Canada; Joint Genome Institute; Office of Science; National Aeronautics and Space Administration; U.S. Department of Energy","keywords":"Biology; Thermophile; Evolutionary biology; Computational biology; Ecology; Genetics; Bacteria","score_opus":0.013680250483266761,"score_gpt":0.26657954117212834,"score_spread":0.2528992906888616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4364361789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99115664,0.000084789404,0.000055881108,0.006809275,0.000091046866,0.00013501872,0.0000059977497,0.000028265475,0.0016330692],"genre_scores_gemma":[0.996575,0.00014977223,0.000014494124,0.00056653155,0.0013790393,0.000010592528,0.000023305072,0.000036938498,0.0012443311],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986329,0.00021212974,0.00015909896,0.00022769356,0.0003605144,0.00040768142],"domain_scores_gemma":[0.99934816,0.000023117254,0.00007149247,0.00029001778,0.00009509159,0.00017214163],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044393286,0.00015730078,0.00012395684,0.00007775753,0.00035949735,0.00009452023,0.00043423966,0.000094013645,0.000035181012],"category_scores_gemma":[0.000026100364,0.000087169996,0.00007763351,0.0003099882,0.000097157514,0.0000071240793,0.00006213309,0.00036738854,0.000069377835],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003773229,0.00010866535,0.00031475924,0.0000041860108,0.00010262201,0.00008541358,0.0004635552,0.00024533522,0.97869587,0.00008549707,0.014030745,0.0054860525],"study_design_scores_gemma":[0.00583988,0.0073652617,0.066995755,0.00012891006,0.000103405684,0.0019768116,0.002630157,0.00065020606,0.84680164,0.0013870357,0.064975984,0.0011449461],"about_ca_topic_score_codex":0.000006295804,"about_ca_topic_score_gemma":0.000015486079,"teacher_disagreement_score":0.1318942,"about_ca_system_score_codex":0.000014627025,"about_ca_system_score_gemma":0.00012664178,"threshold_uncertainty_score":0.35546893},"labels":[],"label_agreement":null},{"id":"W4377294163","doi":"10.1038/s41396-023-01429-6","title":"Permafrost microbial communities and functional genes are structured by latitudinal and soil geochemical gradients","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Engineer Research and Development Center; U.S. Army Corps of Engineers; National Institute of General Medical Sciences; National Science Foundation; Strategic Environmental Research and Development Program; Biological and Environmental Research; U.S. Geological Survey; U.S. Department of Defense; U.S. Department of Energy; European Commission; Office of Science; National Aeronautics and Space Administration","keywords":"Permafrost; Ecology; Biogeochemical cycle; Soil water; Biodiversity; Biology; Biogeochemistry; Climate change; Temperate climate; Earth science; Latitude; Microbial population biology; Arctic; Environmental science; Geology","score_opus":0.041432881438190725,"score_gpt":0.224978870146072,"score_spread":0.1835459887078813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377294163","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99275976,0.0017772204,0.0000028599063,0.0017807678,0.00038458803,0.000039597668,0.003161875,0.000015449119,0.00007786087],"genre_scores_gemma":[0.9950545,0.0024127131,0.000008929331,0.00041681813,0.00047899224,3.5391622e-7,0.0014071055,0.000004158128,0.00021646862],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992999,0.00007194538,0.00013489908,0.00008390693,0.00017297234,0.00023641376],"domain_scores_gemma":[0.99958587,0.0001263764,0.00007203923,0.000076364784,0.00003111998,0.00010825601],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022064576,0.00011396923,0.00012313407,0.000051804447,0.00077783625,0.00019102872,0.00011313432,0.000051138773,0.0017886481],"category_scores_gemma":[0.000007258175,0.00007335512,0.000028820548,0.00009915564,0.00021966182,0.00013215106,0.000037389615,0.0002906356,0.000028411789],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057515786,0.0000054099824,0.93523437,0.000014510948,0.000032853557,0.000012330516,0.001790078,0.00004996586,0.009309286,0.0000038642193,0.051717922,0.001771898],"study_design_scores_gemma":[0.00047206556,0.000045222485,0.9867588,0.000027235032,0.000028525672,0.0010652661,0.003421065,0.0010535723,0.00035210236,0.0007021863,0.005929114,0.0001448107],"about_ca_topic_score_codex":0.00070064375,"about_ca_topic_score_gemma":0.0064643403,"teacher_disagreement_score":0.05152447,"about_ca_system_score_codex":0.000003393903,"about_ca_system_score_gemma":0.000015051347,"threshold_uncertainty_score":0.9991239},"labels":[],"label_agreement":null},{"id":"W4379645551","doi":"10.1038/s41396-023-01447-4","title":"High speciation rate of niche specialists in hot springs","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Natural Science Foundation of China","keywords":"Niche; Biology; Generalist and specialist species; Ecological niche; Biological dispersal; Ecology; Genetic algorithm; Adaptation (eye); Coexistence theory; Niche differentiation; Evolutionary biology; Character displacement; Range (aeronautics); Habitat; Sympatry","score_opus":0.01473193373958351,"score_gpt":0.23449391744968623,"score_spread":0.21976198371010272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4379645551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967576,0.0000038430544,0.000008258072,0.0014179028,0.0002604699,0.000042467644,0.0000013728928,0.0000057711536,0.001502269],"genre_scores_gemma":[0.99899906,0.000086424276,0.000039668303,0.00024604442,0.00012674983,5.558391e-7,0.000002324956,0.0000036088222,0.00049556146],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992845,0.0002969751,0.00017156571,0.000051025756,0.000054276505,0.00014166565],"domain_scores_gemma":[0.9996074,0.00012431147,0.00011843988,0.00012511753,0.000004307256,0.000020414464],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010014457,0.000047035875,0.000097691416,0.00003515137,0.00012752447,0.000007311008,0.00029123103,0.000041974585,0.0052028038],"category_scores_gemma":[0.000051164905,0.00003379456,0.000031666525,0.00023177912,0.000113841714,0.0000646542,0.00015172522,0.00032047337,0.00055389194],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039337893,0.00023110735,0.07040098,0.000009716973,0.000043751672,0.000041430358,0.0067418898,0.02062313,0.7662352,0.0029561792,0.12790595,0.0044173105],"study_design_scores_gemma":[0.00021340545,0.000045197634,0.97549963,0.000005580149,0.0000038587555,0.000012393646,0.000066397195,0.000058444537,0.003252759,0.015619203,0.005178977,0.00004412493],"about_ca_topic_score_codex":0.0003131192,"about_ca_topic_score_gemma":0.001383655,"teacher_disagreement_score":0.9050987,"about_ca_system_score_codex":0.00005922103,"about_ca_system_score_gemma":0.000008676233,"threshold_uncertainty_score":0.99570656},"labels":[],"label_agreement":null},{"id":"W4380538413","doi":"10.1038/s41396-023-01422-z","title":"Delivery mechanism can enhance probiotic activity against honey bee pathogens","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Western University","funders":"W. Garfield Weston Foundation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Brood; Beekeeping; Honey bee; Probiotic; Apiary; Propolis; Varroa; Biotechnology; Nosema; Microbiology; Ecology; Food science; Bacteria; Spore","score_opus":0.032989780217245065,"score_gpt":0.25652833068735825,"score_spread":0.22353855047011317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380538413","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924094,0.000037829497,0.000008633236,0.006758766,0.00018896602,0.0001281147,0.000026088006,0.0000510077,0.00039119288],"genre_scores_gemma":[0.9977369,0.00039107673,0.000014023602,0.00025136085,0.0006903218,0.000004512277,0.000005301748,0.0000013321812,0.00090519973],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987248,0.00021543185,0.00012688823,0.00013493371,0.00035232698,0.00044559245],"domain_scores_gemma":[0.9994131,0.00025010033,0.00007590416,0.000045423534,0.00008799473,0.00012747778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090621784,0.0001049774,0.0001191411,0.000019030436,0.0007671565,0.00013231179,0.0003734861,0.00006650812,0.00037947268],"category_scores_gemma":[0.000068293884,0.000031441577,0.00010137256,0.00043095686,0.000051800846,0.00007724594,0.00010321284,0.000449745,0.00020250242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001546252,0.000020354253,0.00010498481,0.00000260888,0.000012721424,0.000039984152,0.00015335862,0.000016057811,0.9435506,0.00008876615,0.00092234183,0.05507279],"study_design_scores_gemma":[0.0004768395,0.0012828805,0.28485003,0.00019237892,0.000072640716,0.00053946924,0.0015819883,0.003138654,0.66817707,0.03327248,0.005471948,0.00094362436],"about_ca_topic_score_codex":0.00012847001,"about_ca_topic_score_gemma":0.00046638053,"teacher_disagreement_score":0.28474504,"about_ca_system_score_codex":0.000042376858,"about_ca_system_score_gemma":0.000037482,"threshold_uncertainty_score":0.5900425},"labels":[],"label_agreement":null},{"id":"W4380876239","doi":"10.1038/s41396-023-01454-5","title":"Life strategies for <i>Aminicenantia</i> in subseafloor oceanic crust","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Ocean Sciences; Directorate for Geosciences; Global Affairs Canada; Joint Genome Institute; Nuclear Safety and Security Commission; Center for Dark Energy Biosphere Investigations; Office of Science; NASA Astrobiology Institute; National Aeronautics and Space Administration; U.S. Department of Energy; Government of Canada; National Science Foundation","keywords":"Biology; Oceanic crust; Crust; Paleontology; Subduction","score_opus":0.023385872759557978,"score_gpt":0.25533901951146404,"score_spread":0.23195314675190606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380876239","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98694235,0.00021598424,0.00029200767,0.004145725,0.00050826144,0.00022380616,0.000004766577,0.000035454028,0.007631626],"genre_scores_gemma":[0.99627024,0.0004900876,0.00014681334,0.00072225556,0.00018992598,0.000007984016,0.000002301933,0.00001945223,0.0021509577],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9988663,0.00008472828,0.00028212924,0.00013666974,0.00023426555,0.00039586076],"domain_scores_gemma":[0.99944127,0.00013574876,0.00011028537,0.00015527368,0.0000064776086,0.0001509525],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012006433,0.000107791115,0.00013606391,0.000045847948,0.00024879645,0.000102166945,0.00036959484,0.00005953444,0.0011422238],"category_scores_gemma":[0.0000674072,0.00006168134,0.00007918966,0.0004249866,0.00009565435,0.00020691993,0.00009360414,0.0003496981,0.0006862073],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005457684,0.0005005565,0.02310502,0.00010406845,0.00033297812,0.0002472816,0.018163336,0.29482818,0.053519614,0.0070131314,0.5789678,0.02267224],"study_design_scores_gemma":[0.010545886,0.0013284524,0.30112934,0.00032693177,0.00031641193,0.0006726022,0.032100827,0.1398692,0.002787472,0.22549374,0.2833142,0.0021149225],"about_ca_topic_score_codex":0.000033038308,"about_ca_topic_score_gemma":0.000022289476,"teacher_disagreement_score":0.2956536,"about_ca_system_score_codex":0.0000462715,"about_ca_system_score_gemma":0.0000631632,"threshold_uncertainty_score":0.9997709},"labels":[],"label_agreement":null},{"id":"W4382344216","doi":"10.1038/s41396-023-01460-7","title":"Trimethoprim resistance in surface and wastewater is mediated by contrasting variants of the<i>dfrB</i>gene","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; PROTEO; Centre in Green Chemistry and Catalysis","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Geological Survey; Hydro-Québec; Fonds Québécois de la Recherche sur la Nature et les Technologies; Technische Universität Dresden; Bundesministerium für Bildung und Forschung; Government of Canada; University of Auckland; University of Oxford; Canada Research Chairs; University of Manitoba; Göteborgs Universitet; Georgia Institute of Technology","keywords":"Biology; Metagenomics; Mobile genetic elements; Gene; Microbiome; Genetics; Antibiotic resistance; Sewage; Genome; Bacteria","score_opus":0.011008331890587033,"score_gpt":0.24752857424774152,"score_spread":0.2365202423571545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382344216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969507,0.0010163038,0.000080356294,0.0014664737,0.00016655943,0.000096672986,0.000036109523,0.0000037788122,0.00018305996],"genre_scores_gemma":[0.99686545,0.0007145541,0.00051991286,0.00015355318,0.000072167684,4.6822566e-7,0.000005662221,0.00001596141,0.0016522674],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891645,0.00021976797,0.00031635293,0.00015116863,0.00016138307,0.00023486395],"domain_scores_gemma":[0.99939126,0.00007534169,0.00020297703,0.00023755529,0.000050725725,0.000042163912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096462877,0.00010703389,0.00016172545,0.000019275938,0.00010697646,0.000028928362,0.000280651,0.000089400775,0.000016283237],"category_scores_gemma":[0.0002096678,0.00006327259,0.000050171002,0.00017352191,0.0001321706,0.000005176804,0.000107262495,0.00017576265,0.0000022815093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000090980466,0.000010399726,0.008073936,0.00000956949,0.00003381406,0.0000048543784,0.00015986625,0.000009703134,0.98684275,0.000003860414,0.0046960823,0.000064173066],"study_design_scores_gemma":[0.0010234258,0.00004185531,0.12626387,0.00010495335,0.000023786062,0.00006124261,0.0002337649,0.000073247786,0.86816853,0.00043255862,0.0034283244,0.00014440813],"about_ca_topic_score_codex":0.000009680047,"about_ca_topic_score_gemma":0.000015655858,"teacher_disagreement_score":0.118674204,"about_ca_system_score_codex":0.000010990976,"about_ca_system_score_gemma":0.00006676767,"threshold_uncertainty_score":0.25801814},"labels":[],"label_agreement":null},{"id":"W4385780925","doi":"10.1038/s41396-023-01491-0","title":"Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Key Research and Development Program of China; State Key Laboratory of Marine Geology; Tongji University; Natural Science Foundation of Fujian Province; China Postdoctoral Science Foundation","keywords":"Biology; Cold seep; Ecology; Adaptation (eye); Phylum; Host (biology); Microbial ecology; Evolutionary biology; Gene; Genetics; Bacteria","score_opus":0.028937357073820936,"score_gpt":0.2488314348091895,"score_spread":0.21989407773536856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385780925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971856,0.000014019262,0.00032326597,0.001239769,0.00051737635,0.00011628251,0.0000149283005,0.000020425205,0.00056834286],"genre_scores_gemma":[0.9965198,0.00012601454,0.001038829,0.00071460655,0.000073624906,0.0000035394555,0.0000010006179,0.000014303192,0.0015082557],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99905664,0.00013576014,0.00022646044,0.00014066238,0.00019354545,0.000246918],"domain_scores_gemma":[0.999596,0.00008136671,0.000092311195,0.00011890532,0.000008211914,0.00010320614],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005746879,0.000107510015,0.00012355957,0.000041949344,0.0002749221,0.00012291186,0.00020075754,0.000042358653,0.0019933472],"category_scores_gemma":[0.00003552152,0.00007676138,0.000041895142,0.00017561488,0.00015691994,0.00016299527,0.00024160565,0.00027200746,0.00033163745],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038668375,0.000039674836,0.0050149746,0.0000021831706,0.000023754033,0.00007274717,0.00068733824,0.0004025432,0.99173045,0.00029148685,0.0015313999,0.00016475456],"study_design_scores_gemma":[0.0012895168,0.0001773238,0.93427175,0.00006304567,0.000060720173,0.00019605379,0.0022624794,0.0026002342,0.049230207,0.0019948273,0.0075174198,0.00033639817],"about_ca_topic_score_codex":0.0002685803,"about_ca_topic_score_gemma":0.0013454161,"teacher_disagreement_score":0.9425003,"about_ca_system_score_codex":0.00009052428,"about_ca_system_score_gemma":0.0000128595975,"threshold_uncertainty_score":0.99891895},"labels":[],"label_agreement":null},{"id":"W4386533426","doi":"10.1038/s41396-023-01506-w","title":"Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Science Foundation of Zhejiang Province; Université de Lausanne; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Biodiversa+; National Natural Science Foundation of China; Westlake University; National Science Foundation","keywords":"Biology; Effluent; Wastewater; Antibiotics; Sewage treatment; Habitat; Differential (mechanical device); Ecology; Biotechnology; Microbiology; Waste management; Engineering","score_opus":0.028405161840771347,"score_gpt":0.2626886025247839,"score_spread":0.23428344068401252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386533426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998212,0.000015727379,0.0000026383186,0.0008740456,0.00024218722,0.00018645418,0.000018244747,0.000008991735,0.00043973146],"genre_scores_gemma":[0.99892825,0.00022762801,0.000010691828,0.00011096007,0.00004247714,5.486084e-7,0.0000018523667,0.000010157289,0.0006674443],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877155,0.0001666614,0.00021541191,0.00012338837,0.000435024,0.00028799142],"domain_scores_gemma":[0.9992558,0.000292145,0.00013937309,0.00020157959,0.0000019565316,0.00010918852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015715387,0.00015020331,0.00018842577,0.000035251083,0.00020551364,0.00001528064,0.00030253033,0.000033428125,0.0005755298],"category_scores_gemma":[0.000028168779,0.000063489584,0.00014039724,0.00012432269,0.0005283463,0.00006763926,0.00018790316,0.00014809924,0.00045448262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002952546,0.0009317801,0.057133563,0.00005849953,0.00029057133,0.00013406143,0.0027500223,0.0011658028,0.9256049,0.00008494475,0.0059031295,0.0056474875],"study_design_scores_gemma":[0.0007336018,0.00041839096,0.4576679,0.00010800643,0.0000996978,0.000022291075,0.00011092042,0.00029093327,0.53999805,0.0002790056,0.00018778212,0.00008342743],"about_ca_topic_score_codex":0.000043356533,"about_ca_topic_score_gemma":0.0000026294367,"teacher_disagreement_score":0.4005343,"about_ca_system_score_codex":0.00008981268,"about_ca_system_score_gemma":0.000004529862,"threshold_uncertainty_score":0.6301648},"labels":[],"label_agreement":null},{"id":"W4386829317","doi":"10.1038/s41396-023-01515-9","title":"Frequency of change determines effectiveness of microbial response strategies","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Advanced Chemical Sensor Technologies","field":"Engineering","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation; Canada First Research Excellence Fund; Natural Sciences and Engineering Research Council of Canada; Government of Alberta; University of Calgary","keywords":"Biology; Geomicrobiology; Microbial ecology; Ecology; Environmental biotechnology; Bacteria; Genetics","score_opus":0.03632171311859479,"score_gpt":0.27069372389283053,"score_spread":0.23437201077423575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386829317","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989553,0.00022121644,0.0002945958,0.00006877997,0.00015360047,0.00006966735,0.00000881638,0.00017173328,0.00005629632],"genre_scores_gemma":[0.99951935,0.00012534058,0.00027065419,0.0000016494738,0.000054869703,0.0000045950273,4.13423e-7,0.000015876903,0.000007276466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99945647,0.00006343196,0.00018280616,0.000046714915,0.000095528754,0.00015506976],"domain_scores_gemma":[0.99934393,0.00039013408,0.00006251298,0.00014527123,0.000041728996,0.000016408505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025407693,0.00008456474,0.00016419971,0.00009442089,0.000029676004,0.000008680324,0.0002480882,0.00006038199,0.0000074866557],"category_scores_gemma":[0.0001247429,0.000057488767,0.000058455196,0.00025152558,0.00011487418,0.00011384983,0.000033877648,0.00019985184,0.000004591765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051615247,0.0000039421784,0.00011620027,0.00007798862,0.000021349124,0.000009662705,0.00018918094,0.002176277,0.99613,0.000068730755,0.000034491684,0.0011205476],"study_design_scores_gemma":[0.00018148188,0.000040513085,0.010468375,0.0001274594,0.000010392424,0.000060896436,0.00033572002,0.00016916849,0.978581,0.009925201,0.00003205193,0.00006771293],"about_ca_topic_score_codex":0.0000039768456,"about_ca_topic_score_gemma":0.0000015399038,"teacher_disagreement_score":0.017548986,"about_ca_system_score_codex":0.000029736517,"about_ca_system_score_gemma":0.0000057891884,"threshold_uncertainty_score":0.23443238},"labels":[],"label_agreement":null},{"id":"W4387016532","doi":"10.1038/s41396-023-01518-6","title":"Cultivation and genomic characterization of novel and ubiquitous marine nitrite-oxidizing bacteria from the <i>Nitrospirales</i>","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; EQUIPMENT BOKU VIENNA INSTITUTE OF BIOTECHNOLOGY; Universität für Bodenkultur Wien; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Austrian Science Fund; Grantová Agentura České Republiky","keywords":"Nitrospira; Biology; Nitrobacter; Marine habitats; Nitrite; Bacteria; Metagenomics; Microorganism; Ecology; Environmental chemistry; Habitat; Biochemistry; Gene; Genetics; Nitrate","score_opus":0.016439693861077177,"score_gpt":0.20685216505232953,"score_spread":0.19041247119125235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387016532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99861735,0.00001748069,0.00006573536,0.0010521156,0.00008269322,0.000108723274,0.000019871743,0.000011692251,0.00002434361],"genre_scores_gemma":[0.99804586,0.00022557826,0.0012306417,0.00013242151,0.00016623554,0.0000021776063,0.000033807733,0.000010801151,0.00015244968],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994138,0.00004873248,0.00017059858,0.00009812074,0.00014000373,0.00012874293],"domain_scores_gemma":[0.99967456,0.00005358015,0.00013439804,0.00009451947,0.0000063164307,0.0000366309],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026501456,0.00008716228,0.00009361373,0.000018183682,0.0002423464,0.00007326674,0.00011812257,0.000027586657,0.00011036225],"category_scores_gemma":[0.000008125406,0.000047175832,0.000025838646,0.000110549816,0.00010041722,0.00016991145,0.00019823031,0.0000985227,0.000016764998],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024473513,0.000014440345,0.03724588,0.0000012674365,0.00001866725,0.0000015962826,0.0006327619,0.000007533275,0.95904845,0.0000036915444,0.000052316827,0.0029489405],"study_design_scores_gemma":[0.0005826585,0.000038541995,0.92770827,0.00001311437,0.00003950674,0.00006279797,0.000120005454,0.00055634265,0.06996321,0.0003040418,0.00054650026,0.00006501879],"about_ca_topic_score_codex":0.00014752452,"about_ca_topic_score_gemma":0.000017015938,"teacher_disagreement_score":0.8904624,"about_ca_system_score_codex":0.000028609387,"about_ca_system_score_gemma":0.0000045102565,"threshold_uncertainty_score":0.19237746},"labels":[],"label_agreement":null},{"id":"W4387734681","doi":"10.1038/s41396-023-01531-9","title":"Ongoing diversification of the global fish pathogen<i>Piscirickettsia salmonis</i>through genetic isolation and transposition bursts","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fisheries and Oceans Canada","keywords":"Biology; Aquaculture; Outbreak; Genetics; Genome; Fish farming; Mobile genetic elements; Genetic diversity; Pathogen; Evolutionary biology; Zoology; Ecology; Gene; Fishery; Virology","score_opus":0.01154977285734665,"score_gpt":0.22464553814464358,"score_spread":0.21309576528729693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387734681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913897,0.00089280686,0.000967848,0.0057747522,0.0004228309,0.00018997285,0.00008080125,0.000025509531,0.0002558083],"genre_scores_gemma":[0.9988505,0.00027792907,0.000037679056,0.0003035208,0.000050660637,0.0000020880955,0.000052938824,0.000005470179,0.00041918978],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993118,0.00017394584,0.00019045803,0.0001109661,0.000048496386,0.00016431411],"domain_scores_gemma":[0.999609,0.00002542925,0.0001666858,0.00014117644,0.00004641477,0.000011329331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018852696,0.00009283681,0.00009555895,0.000024133082,0.00051080046,0.000027979333,0.00021137582,0.00007633721,0.000049307877],"category_scores_gemma":[0.00001144877,0.000055178854,0.00009158575,0.00023738574,0.00014583503,0.000097940625,0.00005881477,0.00015129993,0.00004344737],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000161508,0.00008068536,0.033309754,0.00004534591,0.00034467116,0.0000064084575,0.0056480747,0.00018951668,0.9139881,0.0011333739,0.037349995,0.007742582],"study_design_scores_gemma":[0.0009588888,0.0000594515,0.97398674,0.00007178075,0.0003563441,0.00017280427,0.0012854227,0.000037877504,0.0071171736,0.002188463,0.013632817,0.00013222724],"about_ca_topic_score_codex":0.000015400954,"about_ca_topic_score_gemma":0.000012477844,"teacher_disagreement_score":0.940677,"about_ca_system_score_codex":0.00003375312,"about_ca_system_score_gemma":0.000020280066,"threshold_uncertainty_score":0.39287156},"labels":[],"label_agreement":null},{"id":"W4387935756","doi":"10.1038/s41396-023-01542-6","title":"Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Office of Science; Genome British Columbia; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada; U.S. Department of Energy","keywords":"Methanogen; Archaea; Biology; Anoxic waters; Formate; Methanogenesis; Anaerobic digestion; Stable-isotope probing; Formate dehydrogenase; Euryarchaeota; Metagenomics; Acetate kinase; Bacteria; Environmental chemistry; Microorganism; Biochemistry; Methane; Ecology; Chemistry; Genetics","score_opus":0.01997140359601745,"score_gpt":0.27163869148964453,"score_spread":0.2516672878936271,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387935756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975565,0.00005299791,0.000038939354,0.0010602137,0.00042043545,0.00011239751,0.0000014792779,0.000035633206,0.0007213882],"genre_scores_gemma":[0.998488,0.0002786465,0.00012216122,0.00014560549,0.00008859812,0.000004992388,0.0000032787734,0.000015715696,0.00085301476],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998597,0.00028384174,0.00026025617,0.00017749649,0.00024313632,0.00043822857],"domain_scores_gemma":[0.9994171,0.0000805679,0.00014423851,0.00018620965,0.000008905934,0.00016292366],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00067707757,0.00012881009,0.00014681305,0.00010933376,0.00040250085,0.00007174561,0.00031509544,0.00004145833,0.0013688296],"category_scores_gemma":[0.00003478066,0.00008546433,0.00006805364,0.0006005903,0.00013707967,0.00033739005,0.000115321745,0.00078231696,0.0005165887],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000118430755,0.000110473215,0.017551495,0.000003953738,0.00012856381,0.00025660082,0.0136616025,0.19822522,0.76372564,0.00030821067,0.0030130567,0.0028967378],"study_design_scores_gemma":[0.006811129,0.0015082821,0.7527596,0.00021468141,0.000632419,0.0020037775,0.055827945,0.10449232,0.020189319,0.03193199,0.021159422,0.002469144],"about_ca_topic_score_codex":0.00020494634,"about_ca_topic_score_gemma":0.00034394636,"teacher_disagreement_score":0.74353635,"about_ca_system_score_codex":0.0002569781,"about_ca_system_score_gemma":0.000023209124,"threshold_uncertainty_score":0.9995441},"labels":[],"label_agreement":null},{"id":"W4388128900","doi":"10.1038/s41396-023-01545-3","title":"Coordinated proteome change precedes cell lysis and death in a mat-forming cyanobacterium","year":2023,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Canada First Research Excellence Fund; Government of Alberta; Genome Canada","keywords":"Biology; Programmed cell death; Cyanobacteria; Lysis; Proteome; Metaproteomics; Microbiology; Cell biology; Metagenomics; Apoptosis; Biochemistry; Bacteria; Genetics","score_opus":0.031238990904616508,"score_gpt":0.2446546329253914,"score_spread":0.2134156420207749,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388128900","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997437,0.00001616407,0.0000058160645,0.0013131911,0.00006967793,0.00015841606,0.0000024008382,0.000016358386,0.0009809718],"genre_scores_gemma":[0.9990298,0.00012445975,0.000051259303,0.00023263016,0.000041031002,0.0000138595815,0.0000033399067,0.0000065814797,0.0004970104],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999256,0.00023673609,0.00013169108,0.00007970368,0.00004984768,0.00024603267],"domain_scores_gemma":[0.9996933,0.0000681138,0.00007394541,0.00011779663,0.000003731511,0.000043116735],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006227479,0.000077629724,0.00011571095,0.00005116807,0.00032641686,0.000024213183,0.0002465634,0.00005919773,0.0011459898],"category_scores_gemma":[0.00001519046,0.000052926396,0.000025575468,0.0002323546,0.00008290562,0.00015160258,0.000299509,0.0003670505,0.00021377021],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016902988,0.00016551212,0.19436996,0.000038775175,0.000040213927,0.00006135911,0.016917087,0.0004157669,0.7782344,0.000034812158,0.003908188,0.0056448975],"study_design_scores_gemma":[0.00041646644,0.00013874708,0.98720866,0.000022767583,0.000012315881,0.00015720414,0.00036755105,0.00058289623,0.004620219,0.0031232068,0.0032110477,0.00013892388],"about_ca_topic_score_codex":0.00028535508,"about_ca_topic_score_gemma":0.00055417663,"teacher_disagreement_score":0.7928387,"about_ca_system_score_codex":0.000050265426,"about_ca_system_score_gemma":0.0000056128756,"threshold_uncertainty_score":0.9997671},"labels":[],"label_agreement":null},{"id":"W4390694515","doi":"10.1093/ismejo/wrad015","title":"Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"National Institute of Environmental Health Sciences; Natural Sciences and Engineering Research Council of Canada; Joint Genome Institute; U.S. Department of Energy; Office of Science; National Institutes of Health; National Science Foundation","keywords":"Biology; Cover (algebra); Environmental change; Ecology; Climate change","score_opus":0.037126891491114734,"score_gpt":0.2829389802768974,"score_spread":0.24581208878578267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390694515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99367034,0.00044677232,0.0000039278484,0.005519903,0.000102947866,0.000080001184,0.000011568737,0.000007844883,0.00015667808],"genre_scores_gemma":[0.99830407,0.00028545863,0.000017367054,0.0011736983,0.000040522995,0.0000050474578,0.0000066971133,0.0000057924067,0.00016132939],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980031,0.0015762759,0.00015534318,0.00006256065,0.00005217659,0.00015050561],"domain_scores_gemma":[0.9991257,0.0006688775,0.000046026897,0.0001271975,0.0000034761251,0.00002870423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011543572,0.00007566848,0.00010965663,0.000051247443,0.00028428092,0.00004492374,0.00024408437,0.000068331115,0.0008561926],"category_scores_gemma":[0.00006328469,0.00005043245,0.00001961305,0.00013195864,0.00012036537,0.00022247642,0.0001963012,0.0010330357,0.00012479813],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007800815,0.000685998,0.57636666,0.0000554129,0.000055649318,0.00011493296,0.08972256,0.00044897402,0.20807792,0.00007669386,0.11900297,0.0046121283],"study_design_scores_gemma":[0.00029976422,0.000082654326,0.96501243,0.00006058141,0.000008131296,0.00007136018,0.00074564887,0.0005838145,0.0006600941,0.0031608802,0.029213818,0.000100823556],"about_ca_topic_score_codex":0.0009372086,"about_ca_topic_score_gemma":0.031358056,"teacher_disagreement_score":0.38864574,"about_ca_system_score_codex":0.00006250791,"about_ca_system_score_gemma":0.000006174426,"threshold_uncertainty_score":0.98631716},"labels":[],"label_agreement":null},{"id":"W4390704069","doi":"10.1093/ismejo/wrad034","title":"Episymbiotic Saccharibacteria induce intracellular lipid droplet production in their host bacteria","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Dental and Craniofacial Research","keywords":"Biology; Host (biology); Intracellular; Bacteria; Intracellular parasite; Lipid droplet; Microbiology; Cell biology; Ecology; Genetics","score_opus":0.013107290557124042,"score_gpt":0.220460138300606,"score_spread":0.20735284774348198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390704069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914508,0.00007689578,0.000024887531,0.0059420555,0.0019219207,0.00012215835,0.0000031710092,0.000022231372,0.00043590847],"genre_scores_gemma":[0.9987294,0.00013800056,0.000064820866,0.00020485996,0.00044360696,0.0000027006763,0.000006378006,0.000012495925,0.00039772768],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987433,0.0005195939,0.00023687008,0.00016149464,0.00006821688,0.00027055142],"domain_scores_gemma":[0.99953973,0.000086172426,0.00006613313,0.00025306115,0.000005439365,0.00004943766],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010637912,0.00012597744,0.00014243314,0.000049695733,0.000288987,0.00008544029,0.0004202344,0.00010317984,0.009670844],"category_scores_gemma":[0.000043963963,0.00008127978,0.00005236063,0.00022636757,0.00020458362,0.0002509273,0.00019842993,0.0010291135,0.0007241066],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026027323,0.000055183446,0.0010631126,0.0000064314568,0.000016609867,0.000009356997,0.0024870115,0.000067935136,0.9885173,0.00003448002,0.0051478455,0.0025687143],"study_design_scores_gemma":[0.000595,0.00059252913,0.6902113,0.0002838886,0.000078014345,0.003528772,0.0011706803,0.00095383567,0.17564678,0.018705744,0.107414946,0.00081853056],"about_ca_topic_score_codex":0.00008231666,"about_ca_topic_score_gemma":0.00046923992,"teacher_disagreement_score":0.8128705,"about_ca_system_score_codex":0.00015058808,"about_ca_system_score_gemma":0.000028034423,"threshold_uncertainty_score":0.9912344},"labels":[],"label_agreement":null},{"id":"W4390858353","doi":"10.1093/ismejo/wrae005","title":"<i>Escherichia coli</i> CRISPR arrays from early life fecal samples preferentially target prophages","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Det Sundhedsvidenskabelige Fakultet, Københavns Universitet; Natural Sciences and Engineering Research Council of Canada; Compute Canada; Canadian Institutes of Health Research; Faculty of Health and Medical Sciences, University of Western Australia; Alliance de recherche numérique du Canada; Canada First Research Excellence Fund; Novo Nordisk Fonden; Fonds de recherche du Québec – Nature et technologies; Danish Agency for Science and Higher Education; Copenhagen Graduate School for Nanoscience and Nanotechnology; Novo Nordisk","keywords":"Biology; Prophage; Escherichia coli; CRISPR; Feces; Microbiology; Lysogenic cycle; Genetics; Bacteriophage; Gene","score_opus":0.01205726318715176,"score_gpt":0.27264390833571894,"score_spread":0.26058664514856716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390858353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8385343,0.009082405,0.15022123,0.00081482437,0.00083588285,0.000110300156,0.000042437587,0.000031574506,0.0003270633],"genre_scores_gemma":[0.9929468,0.00059649564,0.003255686,0.00027996945,0.0023240994,0.000008477168,0.000026004813,0.0000403328,0.0005221348],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990024,0.00007117884,0.00023563573,0.00022112753,0.00019714687,0.00027253694],"domain_scores_gemma":[0.99949765,0.000025425861,0.00004327835,0.00023421117,0.00004842977,0.00015099181],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022094652,0.00017857306,0.00014202895,0.000028745624,0.00014792065,0.00025811887,0.0003120924,0.00010911361,0.00016069274],"category_scores_gemma":[0.00005139735,0.00012100599,0.00014765715,0.00007053251,0.000050108538,0.000007032693,0.000088360684,0.000365515,0.000031598123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004726827,0.00002551916,0.00020539883,0.00001868483,0.00024207808,0.0000097649845,0.00032670563,0.0013306873,0.98094904,0.000047529855,0.015466765,0.0013305745],"study_design_scores_gemma":[0.00057481084,0.0003976967,0.015878892,0.000096380914,0.00017770618,0.000066615336,0.00020677522,0.001033635,0.78676397,0.0014904804,0.19284812,0.00046494283],"about_ca_topic_score_codex":0.000029893587,"about_ca_topic_score_gemma":0.000009588566,"teacher_disagreement_score":0.19418508,"about_ca_system_score_codex":0.000010504116,"about_ca_system_score_gemma":0.00014653787,"threshold_uncertainty_score":0.4934481},"labels":[],"label_agreement":null},{"id":"W4390990497","doi":"10.1093/ismejo/wrad003","title":"Rhizoviticin is an alphaproteobacterial tailocin that mediates biocontrol of grapevine crown gall disease","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Okayama University; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Prophage; Gene; Genetics; Genome; Gall; Locus (genetics); Bacteriophage; Microbiology; Botany; Escherichia coli","score_opus":0.022969738060480208,"score_gpt":0.23274019849457153,"score_spread":0.2097704604340913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390990497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98182684,0.00095764664,0.0000026905907,0.016294131,0.00048688945,0.0001905981,0.00013368808,0.000054207703,0.000053324504],"genre_scores_gemma":[0.9974815,0.00006877842,0.000043103446,0.0006037809,0.0016286308,0.000008638769,0.000014048671,0.0000028640306,0.00014860956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985926,0.00020357802,0.0002978035,0.00020245473,0.00038981263,0.00031375655],"domain_scores_gemma":[0.9992695,0.000191765,0.000131772,0.00009010145,0.000071472015,0.00024538275],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006316364,0.00017147699,0.00021242705,0.00002456205,0.00022785077,0.0002448177,0.0004577995,0.000065450105,0.002920598],"category_scores_gemma":[0.000058526628,0.00004956834,0.00023477175,0.00021625723,0.0001304764,0.00029874124,0.0000578416,0.00026816272,0.000053129173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016977143,0.00008769805,0.0030856035,0.000015521959,0.000091867056,0.000028749319,0.0003514345,2.5672833e-7,0.9809915,0.00015984268,0.0025902567,0.012427544],"study_design_scores_gemma":[0.0012810491,0.0017248272,0.45787117,0.00042845518,0.00075551093,0.0003068666,0.00089395617,0.00044759232,0.503127,0.015390694,0.016847277,0.00092565094],"about_ca_topic_score_codex":0.000112927584,"about_ca_topic_score_gemma":0.00003861757,"teacher_disagreement_score":0.4778645,"about_ca_system_score_codex":0.000027228369,"about_ca_system_score_gemma":0.000034412664,"threshold_uncertainty_score":0.99799085},"labels":[],"label_agreement":null},{"id":"W4391322982","doi":"10.1093/ismejo/wrae018","title":"Dynamics of carbon substrate competition among heterotrophic microorganisms","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Nick Simons Foundation; National Science Foundation","keywords":"Heterotroph; Organic matter; Microorganism; Competition (biology); Substrate (aquarium); Environmental chemistry; Dissolved organic carbon; Carbon fibers; Biology; Total organic carbon; Ecology; Chemistry; Bacteria","score_opus":0.006779891119394137,"score_gpt":0.20547897205491095,"score_spread":0.1986990809355168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391322982","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963397,0.00005275932,0.00013524419,0.001099992,0.0002926996,0.000046997204,0.0000039887127,0.00001174538,0.00201691],"genre_scores_gemma":[0.9995901,0.00005394561,0.000042151496,0.0000750478,0.00005247968,5.8122447e-7,0.000005288,0.0000072032503,0.0001732189],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99937826,0.00020433783,0.00015763538,0.000063674604,0.00006354595,0.00013252352],"domain_scores_gemma":[0.9997187,0.00005209575,0.00006346951,0.00013114959,0.000005231764,0.000029335317],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00030989342,0.00006691263,0.000092908886,0.00002122282,0.00015974756,0.00002237948,0.00027004143,0.000057231442,0.002479922],"category_scores_gemma":[0.000004019011,0.000045570592,0.00005232981,0.00009413107,0.00034010573,0.0000635046,0.000093803974,0.0004883033,0.0000725689],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004017626,0.00008217947,0.009864579,0.000024678382,0.0000783046,0.000034097913,0.001823539,0.004748392,0.9789864,0.0025055131,0.0009876682,0.0008245022],"study_design_scores_gemma":[0.000880818,0.0011353357,0.6720032,0.0002816708,0.00024980254,0.0024177947,0.0007111852,0.03838163,0.06997221,0.2111378,0.0021024172,0.000726133],"about_ca_topic_score_codex":0.00018741608,"about_ca_topic_score_gemma":0.0011882968,"teacher_disagreement_score":0.90901417,"about_ca_system_score_codex":0.00008326417,"about_ca_system_score_gemma":0.000011067099,"threshold_uncertainty_score":0.9984319},"labels":[],"label_agreement":null},{"id":"W4391672773","doi":"10.1093/ismejo/wrae023","title":"Commensal protist<i>Tritrichomonas musculus</i>exhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; University of Toronto; Hospital for Sick Children; Government of Ontario; Compute Canada; Cummings Foundation","keywords":"Biology; Protist; Gut flora; Microbiology; Genetics; Immunology","score_opus":0.018256436408287856,"score_gpt":0.22854845205928234,"score_spread":0.21029201565099448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391672773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9731439,0.0026544272,0.000005768958,0.023015076,0.0006422988,0.00033404535,0.00003719611,0.000047868583,0.00011942532],"genre_scores_gemma":[0.9982,0.00008647697,0.00009190572,0.0010095881,0.00039302622,0.0000063035704,0.0000031919067,0.0000041523194,0.00020536639],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982717,0.00031042498,0.00038158993,0.00023825334,0.00043402525,0.00036398595],"domain_scores_gemma":[0.99904585,0.00032936974,0.00022711248,0.0001326207,0.00015954465,0.00010550366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007846007,0.00019935227,0.00023852676,0.000025081616,0.000593161,0.0002646549,0.0008280638,0.00011383018,0.00011011331],"category_scores_gemma":[0.00014360846,0.000054559496,0.00032139584,0.00055496435,0.00015074764,0.00018268403,0.0002499735,0.0007448053,0.000027499853],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017179855,0.0000519344,0.00041203518,0.00001450149,0.00008672208,0.000008006221,0.00061072916,0.000010973217,0.9863776,0.00003939166,0.0033759924,0.008994949],"study_design_scores_gemma":[0.0021526976,0.0012449716,0.5904973,0.004285792,0.001316643,0.0065539223,0.00995259,0.013345673,0.32744804,0.024281595,0.016277224,0.0026435638],"about_ca_topic_score_codex":0.00013421041,"about_ca_topic_score_gemma":0.000056577013,"teacher_disagreement_score":0.6589295,"about_ca_system_score_codex":0.00007408581,"about_ca_system_score_gemma":0.00006036042,"threshold_uncertainty_score":0.45621747},"labels":[],"label_agreement":null},{"id":"W4392626926","doi":"10.1093/ismejo/wrae040","title":"Phylogenomic position of eupelagonemids, abundant, and diverse deep-ocean heterotrophs","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tula Foundation; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Hakai Institute; Gordon and Betty Moore Foundation","keywords":"Clade; Biology; Ribosomal RNA; Evolutionary biology; Sister group; Phylogenetics; Gene; Ecology; Genetics","score_opus":0.006821335957915239,"score_gpt":0.21894137733309096,"score_spread":0.21212004137517573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392626926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99446416,0.003482518,0.0012371863,0.00027209453,0.00021470786,0.000064503045,0.00002747635,0.000004249788,0.00023311292],"genre_scores_gemma":[0.9985073,0.0007815991,0.00013587823,0.00011171447,0.00029609542,3.2931098e-7,0.000009599216,0.000007139288,0.00015035002],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995424,0.000055171284,0.00010713996,0.00010511881,0.00007816821,0.000111987065],"domain_scores_gemma":[0.99976313,0.000008115615,0.000045646444,0.00010475441,0.000029751438,0.000048600377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017779325,0.00007438628,0.00007230433,0.000031608426,0.00015122927,0.000046347504,0.00014290231,0.000056735596,0.000033842523],"category_scores_gemma":[0.00000694078,0.00005446222,0.00007571646,0.000036018482,0.000109143126,0.0000053551785,0.00009651667,0.00013458097,0.000008515274],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001323467,0.000031223826,0.0032193123,0.00004471259,0.00021776406,0.000033038647,0.00057550095,0.00010455457,0.9874942,0.00036387335,0.0027243483,0.005059133],"study_design_scores_gemma":[0.0036355162,0.003678283,0.13625361,0.0003994931,0.00095108623,0.009716172,0.0023034217,0.0018056773,0.7816853,0.020475987,0.037803527,0.001291929],"about_ca_topic_score_codex":0.0000080122845,"about_ca_topic_score_gemma":0.00000320324,"teacher_disagreement_score":0.2058089,"about_ca_system_score_codex":0.000011203218,"about_ca_system_score_gemma":0.000030357169,"threshold_uncertainty_score":0.22209048},"labels":[],"label_agreement":null},{"id":"W4392702466","doi":"10.1093/ismejo/wrae041","title":"Enigmatic persistence of aerobic methanotrophs in oxygen-limiting freshwater habitats","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Ecology; Limiting; Anoxic waters; Habitat; Persistence (discontinuity); Bacteria; Environmental chemistry","score_opus":0.020038560153148442,"score_gpt":0.23219980274332178,"score_spread":0.21216124259017333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392702466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914623,0.0014458084,0.0002451528,0.0014355688,0.0003215447,0.00008721737,0.0000014131692,0.000011616716,0.0049893972],"genre_scores_gemma":[0.99663585,0.0001620659,0.001767339,0.00010370233,0.00006081613,0.0000024632584,4.592042e-7,0.000013711678,0.0012535593],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99875724,0.00018217605,0.0003519925,0.00013652378,0.00030467505,0.00026737907],"domain_scores_gemma":[0.9995537,0.00013899755,0.000088795816,0.00014629152,0.000005815173,0.000066446715],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001087291,0.000107824315,0.00015369902,0.00006229457,0.0001046834,0.000059354657,0.00031251067,0.00004705621,0.0028654109],"category_scores_gemma":[0.000030552335,0.000059402213,0.000104260245,0.00029762677,0.00013852815,0.00016560238,0.00010507281,0.00049536827,0.00027347115],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007012834,0.00020047322,0.005963019,0.00020852478,0.00029825582,0.00042517748,0.041106597,0.10241697,0.8173016,0.00076464075,0.0053106067,0.025934033],"study_design_scores_gemma":[0.0049709403,0.0020493905,0.08208892,0.006035223,0.0011672026,0.008338247,0.020087155,0.50131565,0.14133823,0.16970386,0.059606317,0.0032988992],"about_ca_topic_score_codex":0.00004726901,"about_ca_topic_score_gemma":0.00004548716,"teacher_disagreement_score":0.67596334,"about_ca_system_score_codex":0.00010169883,"about_ca_system_score_gemma":0.000016047725,"threshold_uncertainty_score":0.9980461},"labels":[],"label_agreement":null},{"id":"W4396569691","doi":"10.1093/ismejo/wrae073","title":"Mechanisms and implications of bacterial–fungal competition for soil resources","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":553,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Key Research and Development Program of China","keywords":"Biology; Competition (biology); Ecology; Soil microbiology; Microbial ecology; Geomicrobiology; Environmental biotechnology; Biotechnology; Bacteria; Soil water; Genetics","score_opus":0.014207880201525021,"score_gpt":0.22289771118557258,"score_spread":0.20868983098404756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396569691","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9864825,0.00064651546,0.00075971,0.009868924,0.00043237308,0.00009999355,0.00091648166,0.000019948506,0.00077354826],"genre_scores_gemma":[0.99845016,0.0005902449,0.00014063739,0.00008683454,0.00041521233,0.0000057995603,0.00007135948,5.61426e-7,0.00023920338],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99966663,0.00003254141,0.000116803785,0.000057148536,0.000051834846,0.00007501864],"domain_scores_gemma":[0.9990026,0.000870614,0.00004250596,0.000017741513,0.00003442354,0.000032135216],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021596599,0.000041853138,0.000057862573,0.000008792764,0.0002294209,0.00010995167,0.00008370359,0.000024524761,0.0014570343],"category_scores_gemma":[0.000025914695,0.0000125334245,0.00005311299,0.000060301172,0.0000067490855,0.00006648481,0.0000139861495,0.00008634907,0.000013716535],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029249844,0.000014480743,0.000119267854,0.000008397985,0.000022135107,5.5464267e-7,0.00022556922,0.0000046862933,0.9276141,0.04526863,0.0078100394,0.018882867],"study_design_scores_gemma":[0.000102010395,0.0007357151,0.018744163,0.00032768538,0.00015367505,0.0021911534,0.0014599543,0.0012581395,0.014800902,0.36424023,0.5957429,0.00024350679],"about_ca_topic_score_codex":0.000034306933,"about_ca_topic_score_gemma":0.000047640762,"teacher_disagreement_score":0.91281325,"about_ca_system_score_codex":0.0000050883896,"about_ca_system_score_gemma":0.0000044939543,"threshold_uncertainty_score":0.99945575},"labels":[],"label_agreement":null},{"id":"W4398141808","doi":"10.1093/ismejo/wrae089","title":"Symbiotic bacteria and fungi proliferate in diapause and may enhance overwintering survival in a solitary bee","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of California, Davis; Dalhousie University; National Science Foundation","keywords":"Biology; Overwintering; Microbiome; Host (biology); Insect; Ecology; Diapause; Zoology; Megachilidae; Honey bee; Larva; Pollinator; Pollination; Genetics; Pollen","score_opus":0.02799024960907521,"score_gpt":0.2301646602222216,"score_spread":0.2021744106131464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398141808","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940511,0.0034394085,2.7599341e-7,0.0022694028,0.00008141378,0.000047664213,0.00000864978,0.000008933427,0.000093132396],"genre_scores_gemma":[0.99746865,0.00214026,0.000004711928,0.000045052606,0.0002198499,0.0000013519337,4.5961497e-7,5.688196e-7,0.000119084856],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99947643,0.000055844128,0.00012698813,0.00010386001,0.00006481991,0.000172082],"domain_scores_gemma":[0.99980694,0.00012809246,0.00001793507,0.0000064237906,0.000005595603,0.000034988392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033998213,0.000075912096,0.00011388941,0.0000117923655,0.00009341818,0.00014846819,0.000068792724,0.000024329567,0.000026267897],"category_scores_gemma":[0.00001247036,0.000023453696,0.000017677092,0.00008865235,0.000035942263,0.00009519119,0.00007417096,0.00019262698,0.0000032745595],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005757179,0.00001670857,0.043152843,0.000018716642,0.000016689579,0.00010721504,0.000750303,9.1827286e-7,0.9400899,0.00008706127,0.00007109523,0.015630992],"study_design_scores_gemma":[0.00006004899,0.00009555761,0.99676496,0.00020873475,0.000005070477,0.00016038903,0.00037255953,0.00011985825,0.0009894602,0.00064763956,0.0004943792,0.00008135273],"about_ca_topic_score_codex":0.00009243624,"about_ca_topic_score_gemma":0.002229954,"teacher_disagreement_score":0.9536121,"about_ca_system_score_codex":0.0000128836145,"about_ca_system_score_gemma":0.000003324259,"threshold_uncertainty_score":0.14316821},"labels":[],"label_agreement":null},{"id":"W4398253721","doi":"10.1093/ismejo/wrae091","title":"Microbial ecology of the deep terrestrial subsurface","year":2024,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Nuclear Waste Management Organization","keywords":"Biosphere; Biology; Ecology; Context (archaeology); Microbial ecology; Microbial population biology; Archaea; Geomicrobiology; Earth science; Environmental biotechnology; Bacteria","score_opus":0.024888789750672952,"score_gpt":0.2775995169426449,"score_spread":0.25271072719197196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398253721","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001021818,0.9914069,0.000005545758,0.00038466856,0.0042726984,0.00035792883,0.000009368154,0.0000071615186,0.0025339213],"genre_scores_gemma":[0.0002084672,0.9958899,0.00004671119,0.000047272035,0.0005376668,0.0000034958096,0.0000015182148,0.000031997373,0.003232979],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997971,0.0006330578,0.00063976296,0.00018621379,0.0002769021,0.0002930875],"domain_scores_gemma":[0.99887127,0.00013781442,0.0005674403,0.0003497446,0.0000034504183,0.000070258706],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00096831826,0.00025775694,0.00067747425,0.000032258617,0.00021593999,0.000055196324,0.0011461428,0.0002535269,0.0025425705],"category_scores_gemma":[0.000030393727,0.00009693733,0.0006574851,0.00031716697,0.0003261958,0.00003573126,0.00048721983,0.001595973,0.0008958044],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034560304,0.00015714641,0.00003868033,0.0015290595,0.0012881196,0.000075104814,0.0014391211,0.0020701052,0.00019729287,0.000102107486,0.06478335,0.92828536],"study_design_scores_gemma":[0.00012349027,0.0000376201,0.000011309379,0.0009654341,0.0012545713,0.00084989757,0.000012945868,0.000030733416,0.00000578154,0.0007015066,0.9958738,0.00013288239],"about_ca_topic_score_codex":0.000031421452,"about_ca_topic_score_gemma":0.000032654127,"teacher_disagreement_score":0.9310905,"about_ca_system_score_codex":0.00017475346,"about_ca_system_score_gemma":0.00009979931,"threshold_uncertainty_score":0.9998821},"labels":[],"label_agreement":null},{"id":"W4399102426","doi":"10.1093/ismejo/wrae092","title":"The atmosphere: a transport medium or an active microbial ecosystem?","year":2024,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Centre National de la Recherche Scientifique; National Health and Medical Research Council; Canadian Institute for Advanced Research; Medical Research Council; Human Frontier Science Program","keywords":"Atmosphere (unit); Ecology; Biology; Ecosystem; Context (archaeology); Biodiversity; Biological dispersal; Climate change; Global change; Astrobiology; Environmental science; Geography; Population","score_opus":0.034389287386256816,"score_gpt":0.30980688986827776,"score_spread":0.27541760248202096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399102426","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002443183,0.9900017,0.000010370998,0.0010431284,0.0033741833,0.00083719764,0.0001327407,0.000044499302,0.0021129993],"genre_scores_gemma":[0.0004059825,0.9952302,0.000025756979,0.00019720323,0.000766979,0.00002259204,0.000027789943,0.000048502006,0.003274992],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99685824,0.0016421125,0.0006132007,0.00024758867,0.00017030769,0.00046857586],"domain_scores_gemma":[0.99840695,0.00044388074,0.00040595073,0.00059903116,0.00001069474,0.00013350113],"candidate_categories":["sts","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0014669149,0.00038853017,0.0008306372,0.000009951807,0.0014863679,0.000089922345,0.0020961661,0.00035850616,0.008644841],"category_scores_gemma":[0.0000230086,0.00015387997,0.00049354107,0.00024174915,0.00040840317,0.00012785646,0.00028579385,0.0028558148,0.0018814531],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026091712,0.00020628178,0.0000034083384,0.0014076753,0.0012198744,0.00019402592,0.0032911622,0.00005450098,0.00012891671,0.00007998367,0.17992586,0.8132274],"study_design_scores_gemma":[0.00008935475,0.00016069524,0.000016386755,0.0007868167,0.0008743016,0.0024834548,0.00012423696,0.0000038604476,0.0000032805292,0.0004914205,0.99475795,0.00020825386],"about_ca_topic_score_codex":0.0000616608,"about_ca_topic_score_gemma":0.0098647615,"teacher_disagreement_score":0.8148321,"about_ca_system_score_codex":0.0003206271,"about_ca_system_score_gemma":0.00030952183,"threshold_uncertainty_score":0.99981356},"labels":[],"label_agreement":null},{"id":"W4399597185","doi":"10.1093/ismejo/wrae102","title":"Leveraging genome-scale metabolic models to understand aerobic methanotrophs","year":2024,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Grantová Agentura České Republiky","keywords":"Biology; Ecology; Microbial ecology; Methanogenesis; Biochemical engineering; Methane; Bacteria; Genetics; Engineering","score_opus":0.07212476257052353,"score_gpt":0.3038069619577346,"score_spread":0.23168219938721107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399597185","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022309825,0.9789078,0.018114494,0.00015915123,0.0018305493,0.00035181985,0.000054495747,0.000016178554,0.00034238372],"genre_scores_gemma":[0.00010437493,0.9914209,0.00063679944,0.00035908216,0.0032959539,0.00001389798,0.00005474572,0.00010980656,0.0040044147],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980301,0.00030006527,0.0005593135,0.0004363282,0.00022971461,0.000444436],"domain_scores_gemma":[0.99896896,0.00001270245,0.00022246632,0.0005271864,0.000072433046,0.00019624314],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007511951,0.0004657651,0.0009072426,0.00019441203,0.00025017693,0.00018692359,0.00060655305,0.0002848779,0.00006941398],"category_scores_gemma":[0.000016454469,0.00027863783,0.0007368573,0.0003090324,0.000046758287,0.000008645006,0.00029132678,0.00074477127,0.00018907968],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010163788,0.00010478748,7.13375e-8,0.003948085,0.0036461246,0.00004828674,0.0021967015,0.0031411503,0.033984575,0.00060438516,0.16623072,0.78599346],"study_design_scores_gemma":[0.00011178551,0.000050913524,1.8326638e-7,0.0006869866,0.0020093545,0.0007522349,0.000110746354,0.0000074780537,0.00019047677,0.00047032937,0.99527574,0.0003337652],"about_ca_topic_score_codex":0.00001087424,"about_ca_topic_score_gemma":0.00000739124,"teacher_disagreement_score":0.829045,"about_ca_system_score_codex":0.00005843581,"about_ca_system_score_gemma":0.00032359574,"threshold_uncertainty_score":0.99996656},"labels":[],"label_agreement":null},{"id":"W4399830464","doi":"10.1093/ismejo/wrae108","title":"Conditions for the spread of CRISPR-Cas immune systems into bacterial populations","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Natural Environment Research Council; Sight Research UK","keywords":"CRISPR; Biology; Population; Immune system; Horizontal gene transfer; Acquired immune system; Bacteria; Microbiology; Genetics; Gene; Genome","score_opus":0.01682747672909287,"score_gpt":0.34670723989606955,"score_spread":0.3298797631669767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399830464","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4837047,0.026387535,0.48140165,0.0026026925,0.005179674,0.00041881125,0.00010339919,0.000016110427,0.00018542708],"genre_scores_gemma":[0.99800515,0.00020776622,0.00019901329,0.0000144147225,0.001162676,0.000018324294,0.000027328133,0.000013729882,0.00035157704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952453,0.000025419853,0.00020590071,0.00006898005,0.00007060647,0.00010457407],"domain_scores_gemma":[0.9996538,0.00004326638,0.000043657958,0.00017684985,0.000056746176,0.000025637366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026512766,0.000068655136,0.000075617936,0.000024349925,0.00018183743,0.00007266094,0.00015969852,0.00004449405,0.00002644762],"category_scores_gemma":[0.000040240746,0.000039184903,0.000119174285,0.00004584079,0.000041327366,0.0000030577141,0.000030512112,0.00009471217,0.00000246112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021907364,0.000011599191,0.000026578546,0.00004231934,0.00016191813,8.420087e-7,0.0003085103,0.0099172555,0.97746354,0.0013844827,0.009802549,0.00085852045],"study_design_scores_gemma":[0.0012033008,0.0006232004,0.009291859,0.00032111703,0.0006389913,0.0012289169,0.0020854757,0.026495697,0.5899588,0.0044221017,0.3632571,0.00047343358],"about_ca_topic_score_codex":0.000028744058,"about_ca_topic_score_gemma":0.000011701108,"teacher_disagreement_score":0.51430047,"about_ca_system_score_codex":0.000009048886,"about_ca_system_score_gemma":0.000042997588,"threshold_uncertainty_score":0.1597914},"labels":[],"label_agreement":null},{"id":"W4400497617","doi":"10.1093/ismejo/wrae127","title":"Linking active rectal mucosa–attached microbiota to host immunity reveals its role in host–pathogenic STEC O157 interactions","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Agriculture and Agri-Food Canada; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Beef Cattle Research Council","keywords":"Biology; Microbiology; Pathogen; Colonization; Host (biology); Immune system; Immunity; Virulence; Microbiome; Escherichia coli; Intestinal mucosa; Gene; Immunology; Genetics","score_opus":0.018375883649766934,"score_gpt":0.3244146173571691,"score_spread":0.30603873370740214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400497617","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908662,0.0046623936,0.00013822468,0.0026979346,0.00039393248,0.00027215542,0.000041598243,0.000014975707,0.0009125866],"genre_scores_gemma":[0.99659044,0.0007888219,0.00030984412,0.0002523756,0.00056130363,0.000028744227,0.0000102600525,0.000031466847,0.0014267745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984411,0.00042595508,0.00028946987,0.0002508104,0.00018129397,0.000411367],"domain_scores_gemma":[0.99925816,0.00010965049,0.000076457436,0.00028558396,0.00015786127,0.00011231111],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00093769084,0.00018430807,0.00018542416,0.00014201237,0.00034216203,0.00017172752,0.00045384953,0.000096149386,0.000044348722],"category_scores_gemma":[0.000395743,0.00013679813,0.00015723828,0.00035033986,0.00005921954,0.00001832649,0.0005072395,0.0011314868,0.000049996022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011550177,0.000051745035,0.00028371526,0.000015215721,0.00017432813,0.000022675727,0.0014140907,0.000018284783,0.9945776,0.00000953157,0.00094754575,0.0023698003],"study_design_scores_gemma":[0.0010835397,0.0010200489,0.09669494,0.0010514819,0.00013017889,0.0013929709,0.0064485646,0.00039703638,0.8178945,0.00033425933,0.07272962,0.0008228224],"about_ca_topic_score_codex":0.000030294252,"about_ca_topic_score_gemma":0.00027214413,"teacher_disagreement_score":0.17668302,"about_ca_system_score_codex":0.00014732177,"about_ca_system_score_gemma":0.00020958607,"threshold_uncertainty_score":0.5578466},"labels":[],"label_agreement":null},{"id":"W4401157842","doi":"10.1093/ismejo/wrae142","title":"Colonization compatibility with <i>Bacillus altitudinis</i> confers soybean seed rot resistance","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Education, India; Ministry of Agriculture - Saskatchewan","keywords":"Biology; Colonization; Compatibility (geochemistry); Botany; Microbiology; Biotechnology","score_opus":0.02016852687476308,"score_gpt":0.22880505003476106,"score_spread":0.20863652315999798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401157842","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893153,0.00028001406,0.00010916145,0.007629984,0.00031879084,0.000108472115,0.000049836082,0.000046532958,0.0021419188],"genre_scores_gemma":[0.99825174,0.000070191374,0.000048620248,0.00025560686,0.00019951156,0.0000020969271,0.000018715913,8.729596e-7,0.0011526368],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992663,0.00013585045,0.0001746607,0.000112694506,0.00014976192,0.00016073497],"domain_scores_gemma":[0.99952656,0.00019284135,0.000074568496,0.000052485837,0.00010101192,0.000052521573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041539044,0.00009102859,0.00010406545,0.00000872551,0.00060449744,0.0003155722,0.00020913889,0.00003330318,0.0003256268],"category_scores_gemma":[0.000022213933,0.000025250902,0.000052219413,0.00021561878,0.000088096385,0.00019309211,0.000026686435,0.0003764848,0.00004096804],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082094,0.0004051054,0.0125543615,0.00005128751,0.00037985697,0.0001157411,0.0021440538,0.00025588681,0.8901683,0.0022108243,0.06926753,0.021626113],"study_design_scores_gemma":[0.0005181084,0.0007531355,0.33923268,0.0005475711,0.00012614789,0.0013976549,0.0028139001,0.0014537483,0.012697046,0.0021865745,0.63773525,0.00053815707],"about_ca_topic_score_codex":0.00013465872,"about_ca_topic_score_gemma":0.0019340215,"teacher_disagreement_score":0.87747127,"about_ca_system_score_codex":0.000056573615,"about_ca_system_score_gemma":0.00003160071,"threshold_uncertainty_score":0.46493667},"labels":[],"label_agreement":null},{"id":"W4401158037","doi":"10.1093/ismejo/wrae141","title":"Cell motility empowers bacterial contact weapons","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Winnipeg; University of Manitoba","funders":"H2020 European Research Council; Wellcome Trust; Human Frontier Science Program","keywords":"Motility; Biology; Secretion; Cell biology; Microbial toxins; Cell; Type VI secretion system; Bacteria; Virulence; Genetics; Gene","score_opus":0.011000333168546012,"score_gpt":0.2808974691893013,"score_spread":0.26989713602075527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401158037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916065,0.0016035732,0.00031295166,0.0028090454,0.0012091979,0.000097924225,0.000033828568,0.000014596994,0.0023124185],"genre_scores_gemma":[0.9958135,0.0008394682,0.000066569606,0.00009612224,0.0014115664,0.0000044926,0.0000123762065,0.000018219624,0.001737704],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989991,0.00016612135,0.0001752181,0.00017924105,0.00018357705,0.00029674292],"domain_scores_gemma":[0.9995272,0.00003312862,0.000038442362,0.00024017012,0.00006113238,0.00009990756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058626116,0.00012600808,0.00011309721,0.00003159292,0.0002231088,0.00022973216,0.00029091493,0.000066913395,0.00026639903],"category_scores_gemma":[0.00009258479,0.000077295146,0.00014833342,0.000059469978,0.00009204632,0.000007246629,0.00018056986,0.00030622064,0.00006339385],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099786914,0.000024223646,0.00024306907,0.000015683678,0.00012670335,0.000022262295,0.00016933183,0.0000030303227,0.9463703,0.000016992117,0.05184571,0.0010629037],"study_design_scores_gemma":[0.001013175,0.0008170682,0.029638406,0.00006435171,0.00008026288,0.00035251322,0.00046675166,0.00008529827,0.31236452,0.00048270647,0.6543243,0.00031067955],"about_ca_topic_score_codex":0.000010483713,"about_ca_topic_score_gemma":0.000008091119,"teacher_disagreement_score":0.6340058,"about_ca_system_score_codex":0.000032534714,"about_ca_system_score_gemma":0.00018626223,"threshold_uncertainty_score":0.31520048},"labels":[],"label_agreement":null},{"id":"W4402889100","doi":"10.1093/ismejo/wrae188","title":"Hidden syndinian and perkinsid infections in dinoflagellate hosts revealed by single-cell transcriptomics","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Hakai Institute; Gordon and Betty Moore Foundation","keywords":"Biology; Dinoflagellate; Clade; Host (biology); Transcriptome; Parasite hosting; Evolutionary biology; Gene; Lineage (genetic); Sister group; Genome; Phylogenetics; Genetics; Ecology; Gene expression","score_opus":0.008356339745922236,"score_gpt":0.2092086618845492,"score_spread":0.20085232213862697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402889100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99318385,0.0039498354,0.0002498394,0.0010930501,0.00025995416,0.00008561856,0.000028098608,0.0000073277793,0.001142402],"genre_scores_gemma":[0.99714816,0.0015081076,0.00005238341,0.00018169144,0.0001651791,0.0000012941973,0.000008698632,0.000010707803,0.00092378276],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99944603,0.000077125864,0.00011980108,0.00013269436,0.00006761647,0.00015669799],"domain_scores_gemma":[0.99978095,0.00001535608,0.000027860353,0.0000966995,0.000015998407,0.00006311626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022748313,0.000090853995,0.000080012374,0.00004550158,0.00015104006,0.00010462734,0.000124784,0.00008795791,0.000024866507],"category_scores_gemma":[0.000011006988,0.00007071422,0.000059793972,0.00007502208,0.00006228472,0.000006925519,0.00004357988,0.0002621786,0.000008513341],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003861956,0.00007136026,0.008591137,0.000029736768,0.000056974444,0.000038096838,0.00073751516,0.000009238946,0.97817,0.000032036205,0.009565383,0.0026599364],"study_design_scores_gemma":[0.005844373,0.0033782271,0.07036119,0.0005929472,0.0005448626,0.008366068,0.0014803894,0.00068265275,0.41344807,0.0064459923,0.48698574,0.0018694997],"about_ca_topic_score_codex":0.000014404778,"about_ca_topic_score_gemma":0.00002731064,"teacher_disagreement_score":0.5647219,"about_ca_system_score_codex":0.000020835983,"about_ca_system_score_gemma":0.0000406129,"threshold_uncertainty_score":0.2883642},"labels":[],"label_agreement":null},{"id":"W4403205256","doi":"10.1093/ismejo/wrae194","title":"Insecticide susceptibility in a planthopper pest increases following inoculation with cultured <i>Arsenophonus</i>","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Fundamental Research Funds for the Central Universities; Biotechnology and Biological Sciences Research Council; Huazhong Agricultural University; National Natural Science Foundation of China","keywords":"Biology; Brown planthopper; Symbiosis; Host (biology); PEST analysis; Host adaptation; Obligate; Zoology; Ecology; Genetics; Botany; Genome; Bacteria; Gene","score_opus":0.012063232164024348,"score_gpt":0.2193805754128991,"score_spread":0.20731734324887474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403205256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972226,0.00029729505,0.0000016078872,0.001729399,0.0003097664,0.00011640985,0.000009636167,0.00003662148,0.0002766887],"genre_scores_gemma":[0.9989958,0.000040580326,0.000037229653,0.00028934656,0.0005751539,0.000004460954,0.000009370801,0.0000011796905,0.000046897243],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99894416,0.00018256095,0.00024292107,0.00016933828,0.00023329703,0.00022769],"domain_scores_gemma":[0.999608,0.00019998424,0.000062322855,0.000040776304,0.000032199074,0.00005671228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067852734,0.00012697169,0.00014822972,0.000017632086,0.0003206086,0.00042668649,0.00017601222,0.00006306863,0.00022624423],"category_scores_gemma":[0.00004284884,0.00003234177,0.000103546954,0.00034887245,0.000051412546,0.000332421,0.000028485812,0.00029776187,0.000015645424],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013868051,0.00009380447,0.07226715,0.00000835799,0.00004407056,0.00011393391,0.0009450427,0.0000404467,0.918499,0.00008371109,0.00044573637,0.007320089],"study_design_scores_gemma":[0.00029155615,0.00051944464,0.97973704,0.00042699144,0.000061790226,0.0007225815,0.0015319678,0.00014607854,0.009475947,0.0014927163,0.00526262,0.00033126932],"about_ca_topic_score_codex":0.0015256961,"about_ca_topic_score_gemma":0.006077778,"teacher_disagreement_score":0.90902305,"about_ca_system_score_codex":0.000050793526,"about_ca_system_score_gemma":0.000025323212,"threshold_uncertainty_score":0.41145477},"labels":[],"label_agreement":null},{"id":"W4403665064","doi":"10.1093/ismejo/wrae214","title":"Trade-offs between receptor modification and fitness drive host-bacteriophage co-evolution leading to phage extinction or co-existence","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Lytic cycle; Bacteriophage; Genetics; Population; Mutation rate; Mutation; Gene; Experimental evolution; Microbiology; Virus; Escherichia coli","score_opus":0.03165803632096489,"score_gpt":0.3076438351458009,"score_spread":0.27598579882483604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403665064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98417425,0.00007505679,0.010833368,0.0032156438,0.000642751,0.00025149947,0.00004534381,0.000059261543,0.00070281146],"genre_scores_gemma":[0.99566454,0.00010203524,0.00046876725,0.0001612686,0.00050352147,0.000013000162,0.0000134817865,0.00002247087,0.0030509303],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99884677,0.000117239986,0.0003031434,0.00026994362,0.00019337458,0.0002695341],"domain_scores_gemma":[0.9994589,0.00010208451,0.0001134993,0.00015999742,0.000009461258,0.00015603448],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00045590644,0.00015752112,0.00015760624,0.00007178619,0.00059023564,0.00038531254,0.00021626658,0.00007345431,0.001844596],"category_scores_gemma":[0.000027647786,0.00011107701,0.000070766204,0.0002348036,0.00013787285,0.00074722036,0.000056506902,0.0004298647,0.0007891553],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034497018,0.000022833232,0.0004722118,0.000012077157,0.000025677786,0.000009449219,0.0022144816,0.000039997536,0.9663242,0.000022315879,0.0036756014,0.027146658],"study_design_scores_gemma":[0.0006774762,0.0006602515,0.6597826,0.0004389413,0.00023106785,0.0020375282,0.0027043615,0.0012409975,0.112800986,0.00022301059,0.21843903,0.00076376746],"about_ca_topic_score_codex":0.00005048366,"about_ca_topic_score_gemma":0.00003274209,"teacher_disagreement_score":0.8535232,"about_ca_system_score_codex":0.00046376247,"about_ca_system_score_gemma":0.000024217565,"threshold_uncertainty_score":0.99998885},"labels":[],"label_agreement":null},{"id":"W4404241142","doi":"10.1093/ismejo/wrae219","title":"Microbial solutions must be deployed against climate catastrophe","year":2024,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Global Energy and Sustainability Research","field":"Energy","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Alberta","funders":"","keywords":"Biology; Geomicrobiology; Microbial ecology; Extreme environment; Ecology; Environmental biotechnology; Bacteria; Genetics","score_opus":0.024117961512731826,"score_gpt":0.2788204035352,"score_spread":0.25470244202246817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404241142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94801706,0.001879147,0.00064656715,0.030471504,0.0016546668,0.00016364417,0.00007468509,0.00025354276,0.016839184],"genre_scores_gemma":[0.9964405,0.00032653526,0.00014836354,0.00051780493,0.00069492473,0.000004726577,0.000016113972,0.00003036053,0.0018206891],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980942,0.0002981499,0.0002985831,0.00018373618,0.00033444542,0.00079087657],"domain_scores_gemma":[0.9992205,0.00011853336,0.00003625341,0.00030620163,0.00014053553,0.00017796585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010884772,0.00015093404,0.00014544626,0.00010081939,0.0009596134,0.0004040808,0.00047540528,0.000088016146,0.0004289949],"category_scores_gemma":[0.00013240425,0.00009646893,0.00020701646,0.00033987744,0.00020742066,0.00019436037,0.00021596228,0.00088496285,0.00018434566],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042600321,0.0004921826,0.00026750064,0.0002781999,0.0009926696,0.0019725228,0.005093155,0.16271235,0.038026653,0.38758913,0.23344737,0.16870226],"study_design_scores_gemma":[0.00094732054,0.00019309261,0.0010186837,0.00015471908,0.00013660332,0.0014401895,0.0035741567,0.011649002,0.0012784371,0.024430199,0.9547039,0.0004736975],"about_ca_topic_score_codex":0.00041531006,"about_ca_topic_score_gemma":0.00043784044,"teacher_disagreement_score":0.72125655,"about_ca_system_score_codex":0.00027892878,"about_ca_system_score_gemma":0.00030574933,"threshold_uncertainty_score":0.7380668},"labels":[],"label_agreement":null},{"id":"W4406018522","doi":"10.1093/ismejo/wrae258","title":"<i>Escherichia coli</i> phage-inducible chromosomal island aids helper phage replication and represses the locus of enterocyte effacement pathogenicity island","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Pathogenicity island; Genetics; Prophage; Virulence; Temperateness; Gene; Lysogenic cycle; Escherichia coli; Mobile genetic elements; Repressor; Bacteriophage; Microbiology; Plasmid; Gene expression","score_opus":0.007338023862538159,"score_gpt":0.24453092795502082,"score_spread":0.23719290409248267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406018522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935795,0.00037751955,0.0014621796,0.0017666839,0.0002522724,0.00024194273,0.00002717798,0.000008882111,0.002283837],"genre_scores_gemma":[0.99615383,0.00040919718,0.00014129424,0.0006954666,0.000082118684,0.000011614539,0.0000022552047,0.000008228368,0.0024960118],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895513,0.00014798033,0.00031871055,0.00023356988,0.00015372329,0.00019088382],"domain_scores_gemma":[0.9991718,0.00007149849,0.00021876431,0.0004709609,0.00002098441,0.000045971425],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00055085006,0.00012962768,0.00015463072,0.000022359427,0.00045155693,0.000110014655,0.00031112277,0.000045786477,0.0010926897],"category_scores_gemma":[0.0000329839,0.00007402729,0.00008048245,0.00015830316,0.0001845482,0.00020473938,0.00023139437,0.000308946,0.000021814923],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005967068,0.00008763719,0.0017194139,0.000008740932,0.00006092031,0.000002737963,0.000721163,0.00012248864,0.98686105,0.000012672946,0.007066824,0.0032766946],"study_design_scores_gemma":[0.0017099414,0.00033492784,0.1367375,0.00016391193,0.00031739572,0.00048799397,0.0007072886,0.00036106713,0.77104473,0.00043336034,0.08743185,0.00027003046],"about_ca_topic_score_codex":0.00026476488,"about_ca_topic_score_gemma":0.0002538578,"teacher_disagreement_score":0.2158163,"about_ca_system_score_codex":0.00007502916,"about_ca_system_score_gemma":0.00002080588,"threshold_uncertainty_score":0.9998205},"labels":[],"label_agreement":null},{"id":"W4406685570","doi":"10.1093/ismejo/wraf011","title":"Led astray by 16S rRNA: phylogenomics reaffirms the monophyly of <i>Methylobacterium</i> and lack of support for <i>Methylorubrum</i> as a genus","year":2025,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Methylobacterium; Monophyly; Phylogenomics; Clade; Phylogenetics; Taxonomy (biology); 16S ribosomal RNA; Evolutionary biology; Genus; Botany; Genetics; Gene","score_opus":0.02207144934648557,"score_gpt":0.3077510888334351,"score_spread":0.2856796394869495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406685570","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0047902474,0.9913057,0.00079665595,0.00014829707,0.0008734895,0.0007712973,0.0010532712,0.0000035752678,0.00025745592],"genre_scores_gemma":[0.00045119072,0.9962726,0.00034743478,0.0002769293,0.00070850784,0.0000319855,0.00016950513,0.000046452482,0.0016953889],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99796003,0.00033744963,0.0009159271,0.00031536492,0.0001542275,0.00031698702],"domain_scores_gemma":[0.99791706,0.00015087685,0.0011058586,0.0005554196,0.00018841187,0.00008234722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012798179,0.0003946925,0.0011238129,0.00007076484,0.00016992485,0.00004023595,0.0006575165,0.0003887483,0.00001992503],"category_scores_gemma":[0.00018814701,0.00022382756,0.00066291436,0.00015755673,0.00022364658,0.0000060734064,0.00019297536,0.00041213093,0.0000023586301],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037918036,0.00014042438,0.000005891732,0.0054406603,0.0013750449,0.000001866633,0.00012022044,0.000009213435,0.2380067,0.00009882112,0.09854628,0.6558757],"study_design_scores_gemma":[0.00050522556,0.0003841031,0.000005619631,0.0005242323,0.0012384766,0.00024029655,0.00003621248,5.712558e-7,0.014556371,0.000102693426,0.9821966,0.0002095871],"about_ca_topic_score_codex":0.000020734393,"about_ca_topic_score_gemma":0.0000054465027,"teacher_disagreement_score":0.8836503,"about_ca_system_score_codex":0.000017746708,"about_ca_system_score_gemma":0.0005075969,"threshold_uncertainty_score":0.9127423},"labels":[],"label_agreement":null},{"id":"W4407320615","doi":"10.1093/ismejo/wraf024","title":"Proteomic evidence for aerobic methane production in groundwater by methylotrophic <i>Methylotenera</i>","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Biodiversity Monitoring Institute; Provincial Laboratory of Public Health; University of Alberta; Alberta Environment and Protected Areas; University of Calgary","funders":"Fundamental Research Funds for the Central Universities; Alliance de recherche numérique du Canada; University of Calgary; Alberta Innovates; Canada Foundation for Innovation; Canada First Research Excellence Fund; Natural Sciences and Engineering Research Council of Canada; Government of Alberta","keywords":"Ecotype; Methane; Biology; Environmental chemistry; Anaerobic oxidation of methane; Phosphate; Bacteria; Aquifer; Groundwater; Ecology; Biochemistry; Chemistry","score_opus":0.022370512522838837,"score_gpt":0.27466533006544874,"score_spread":0.2522948175426099,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407320615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97992444,0.0014348828,0.0037038992,0.012882543,0.0008109138,0.00086610875,7.754308e-7,0.00001808919,0.0003583551],"genre_scores_gemma":[0.984039,0.0008292853,0.0031278555,0.00072342914,0.00019638556,0.00012591314,0.0000018500713,0.000022313538,0.010933978],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99819714,0.00040268977,0.00042640767,0.00030458657,0.00026669854,0.0004024967],"domain_scores_gemma":[0.9993196,0.00014051878,0.00017333796,0.0002782475,0.00001904995,0.00006922771],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028850695,0.0001766104,0.00022149456,0.000082703344,0.00026796592,0.00007580225,0.00045692202,0.00009319072,0.00033065284],"category_scores_gemma":[0.00018929108,0.00010319887,0.00010323897,0.0004852732,0.00015390261,0.0003328573,0.00011208504,0.0005876683,0.00006462025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019412785,0.00010002163,0.00092170195,0.000021021866,0.000053423035,0.0000025553468,0.00047021557,0.009340412,0.97066313,0.0000478513,0.010240152,0.007945401],"study_design_scores_gemma":[0.0045623374,0.0011114744,0.011021077,0.00095995236,0.00053600443,0.00043846696,0.00040812994,0.0059685376,0.8303907,0.098998874,0.044329822,0.0012746475],"about_ca_topic_score_codex":0.0002183786,"about_ca_topic_score_gemma":0.000023147715,"teacher_disagreement_score":0.14027244,"about_ca_system_score_codex":0.00028308624,"about_ca_system_score_gemma":0.00003454332,"threshold_uncertainty_score":0.42083278},"labels":[],"label_agreement":null},{"id":"W4407740177","doi":"10.1093/ismejo/wraf032","title":"Lysis of <i>Escherichia coli</i> by colicin Ib contributes to bacterial cross-feeding by releasing active β-galactosidase","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; Regional Municipality of Waterloo; University of Regina","funders":"National Institute of Allergy and Infectious Diseases; Bader Philanthropies; Instituto Mexicano del Seguro Social; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Universities Space Research Association","keywords":"Salmonella enterica; Biology; Escherichia coli; Colicin; Microbiology; Population; Enterobacteriaceae; Lactose; Biochemistry; Gene","score_opus":0.003427679349127107,"score_gpt":0.25902030620624245,"score_spread":0.2555926268571153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407740177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97093034,0.00051601796,0.024961699,0.0023145967,0.0003394292,0.00014892961,0.00012530111,0.000005806495,0.0006579059],"genre_scores_gemma":[0.99546057,0.00025493058,0.00027698264,0.0016149761,0.00015728414,0.000005374442,0.000046087596,0.000013928699,0.0021698459],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898,0.00012138997,0.00033962957,0.00016925242,0.0001363308,0.00025338805],"domain_scores_gemma":[0.9992253,0.000037938335,0.00018814197,0.0001932148,0.0002629978,0.000092362854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002458661,0.00014285212,0.00020773035,0.00004404373,0.00024412491,0.00009142746,0.00028140642,0.00013191157,0.000029704028],"category_scores_gemma":[0.00023802649,0.00011404629,0.00010542444,0.00022724814,0.00011683448,0.0000059309764,0.000110212844,0.00019554692,0.0000025046272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036723065,0.000047691974,0.00059821305,0.0000058339006,0.00014502446,2.7730604e-7,0.000065978915,0.00016241075,0.9324652,0.00004216952,0.065582424,0.00051756273],"study_design_scores_gemma":[0.00162325,0.0002117457,0.008261446,0.00005853026,0.00010489891,0.000010975745,0.00024331566,0.00037442424,0.89692044,0.00016130615,0.091842756,0.00018691104],"about_ca_topic_score_codex":0.00003503697,"about_ca_topic_score_gemma":0.000016556176,"teacher_disagreement_score":0.035544742,"about_ca_system_score_codex":0.00005476122,"about_ca_system_score_gemma":0.00016091387,"threshold_uncertainty_score":0.46506727},"labels":[],"label_agreement":null},{"id":"W4407838679","doi":"10.1093/ismejo/wraf031","title":"Phylogenomic resolution of marine to freshwater dinoflagellate transitions","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tula Foundation; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Gordon and Betty Moore Foundation","keywords":"Biology; Dinoflagellate; Phylogenomics; Ecology; Protist; Phototroph; Plastid; Phylogenetics; Ecological niche; Range (aeronautics); Tree of life (biology); Evolutionary biology; Gene; Botany; Habitat; Chloroplast; Photosynthesis; Clade; Genetics","score_opus":0.006899257076601612,"score_gpt":0.22460384475912784,"score_spread":0.21770458768252623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407838679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98821676,0.00015014711,0.006563894,0.002307295,0.00015413004,0.00009530863,0.00003725038,0.000002272247,0.0024729616],"genre_scores_gemma":[0.997365,0.00007495924,0.00057285675,0.00046908937,0.000113942944,0.0000012951286,0.000011373474,0.000003254341,0.0013882247],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995911,0.00005489777,0.00011462272,0.00007489776,0.00005339726,0.0001110945],"domain_scores_gemma":[0.9997319,0.0000045000806,0.000035979134,0.00014491398,0.000048513743,0.000034192428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018759309,0.000054759108,0.00006649961,0.000040646257,0.00015552419,0.000012353572,0.00019393933,0.000045228793,0.00007840563],"category_scores_gemma":[0.0000106340885,0.00004053503,0.00007356069,0.00006195957,0.000043430293,0.000001561911,0.00009725538,0.00009046773,0.000009332422],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001574088,0.000029277493,0.001910693,0.0000072779244,0.000087419925,0.000002059029,0.00013239417,0.0007983368,0.9858225,0.0002662092,0.009448844,0.0013375742],"study_design_scores_gemma":[0.0010617696,0.0004087289,0.07624998,0.000042635216,0.00012897387,0.00009836216,0.00015643693,0.00011674043,0.83606505,0.006643045,0.07882604,0.00020222196],"about_ca_topic_score_codex":0.000015543012,"about_ca_topic_score_gemma":0.00006696804,"teacher_disagreement_score":0.14975744,"about_ca_system_score_codex":0.000010591165,"about_ca_system_score_gemma":0.00003915688,"threshold_uncertainty_score":0.16529705},"labels":[],"label_agreement":null},{"id":"W4408491281","doi":"10.1093/ismejo/wraf053","title":"Metabolism of CO and H2 by pioneer bacteria in volcanic soils and the phyllosphere","year":2025,"lang":"en","type":"review","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Environment Research Council","keywords":"Phyllosphere; Biology; Ecology; Ecosystem; Environmental chemistry; Microbial ecology; Carbon cycle; Biogeochemical cycle; Bacteria; Paleontology; Chemistry","score_opus":0.009844494325075013,"score_gpt":0.26652238915335447,"score_spread":0.25667789482827946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408491281","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01083277,0.98729,0.0000032176952,0.00031453892,0.00013850971,0.00023996904,0.000025906627,0.0000018561778,0.0011531906],"genre_scores_gemma":[0.0018175961,0.9972036,0.000015051052,0.00020096423,0.000034221743,0.0000056759905,0.0000063721427,0.000006522895,0.00071000657],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980445,0.0012978385,0.00034039514,0.00009969822,0.00006047787,0.000157082],"domain_scores_gemma":[0.99891865,0.000551795,0.00027823212,0.00021611716,0.000004052342,0.000031153304],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010545678,0.00015981396,0.0007586385,0.000019048886,0.0002141183,0.000021251743,0.0004741843,0.0001504433,0.0020836126],"category_scores_gemma":[0.00004078251,0.00007727385,0.00010294146,0.00010982358,0.0006610924,0.00005010724,0.00032721192,0.0008996182,0.000014677871],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018688415,0.0001945091,0.00011712158,0.002498043,0.00060708204,0.0000067498313,0.0030870407,0.000013800235,0.0011901171,0.0010456551,0.122563526,0.86848944],"study_design_scores_gemma":[0.0005144504,0.000023585673,0.0008986788,0.0006679041,0.00028628373,0.00013857467,0.000051918865,0.0000029759553,0.0000050479,0.0022475442,0.9950462,0.00011681877],"about_ca_topic_score_codex":0.00015660825,"about_ca_topic_score_gemma":0.00031392733,"teacher_disagreement_score":0.8724827,"about_ca_system_score_codex":0.000027688151,"about_ca_system_score_gemma":0.000040323786,"threshold_uncertainty_score":0.9988286},"labels":[],"label_agreement":null},{"id":"W4409149121","doi":"10.1093/ismejo/wraf063","title":"Adaptive genomic plasticity in large-genome, broad-host–range vibrio phages","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Institut de Recherche Clinique De Montréal; Canada Excellence Research Chairs, Government of Canada; H2020 European Research Council; Agence Nationale de la Recherche; Institut Français de Recherche pour l'Exploitation de la Mer; European Commission; Université Laval","keywords":"Biology; Host (biology); Genome; Evolutionary biology; Ecology; Vibrio; Generalist and specialist species; Genetics; Range (aeronautics); Gene; Bacteria","score_opus":0.008941888401614919,"score_gpt":0.23683557050327417,"score_spread":0.22789368210165925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409149121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870451,0.00013557884,0.0020703997,0.001237687,0.00039071066,0.0001273061,0.000023120596,0.000012837925,0.0089572305],"genre_scores_gemma":[0.9952558,0.00012738294,0.00023249666,0.00068329193,0.0000999367,0.0000037626805,6.9120836e-7,0.000008749344,0.003587852],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991414,0.00008759581,0.00023597023,0.00014192697,0.000094407405,0.00029871665],"domain_scores_gemma":[0.9996592,0.00006606537,0.000094479234,0.00011584173,0.000007555806,0.000056854373],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020288577,0.00011517734,0.00013400186,0.000057563357,0.00031014066,0.00008459242,0.00032034778,0.000045346842,0.0040636905],"category_scores_gemma":[0.000018895573,0.00008218894,0.00008032364,0.00018506152,0.000090151145,0.00021553432,0.00020789896,0.00048649037,0.00051172724],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011928167,0.0002021849,0.0059973155,0.000003561443,0.000057987385,0.00003538814,0.0015809126,0.001239638,0.9831557,0.00010024505,0.005026858,0.002480924],"study_design_scores_gemma":[0.00051968754,0.000048338035,0.9659334,0.00003156814,0.000028181295,0.000108609034,0.0003636062,0.0003293282,0.002256389,0.00023136706,0.030032333,0.00011721242],"about_ca_topic_score_codex":0.00031022017,"about_ca_topic_score_gemma":0.0008871547,"teacher_disagreement_score":0.98089933,"about_ca_system_score_codex":0.0003179784,"about_ca_system_score_gemma":0.00002037921,"threshold_uncertainty_score":0.99684674},"labels":[],"label_agreement":null},{"id":"W4409527835","doi":"10.1093/ismejo/wraf071","title":"Within-host competition causes pathogen molecular evolution and perpetual microbiota dysbiosis","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Linacre College, University of Oxford","keywords":"Biology; Pathogen; Virulence; Dysbiosis; Microbiology; Host (biology); Metagenomics; Microbiome; Genetics; Gene","score_opus":0.0031503079466637467,"score_gpt":0.22204129507735962,"score_spread":0.21889098713069588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409527835","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9664481,0.0024676814,0.028099086,0.0018860981,0.0003013882,0.00010210952,0.000025798285,0.000008751239,0.0006609345],"genre_scores_gemma":[0.9970446,0.00040111225,0.00068596937,0.00084209716,0.00011905493,0.0000025600486,0.000027388318,0.000010221342,0.0008669798],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926174,0.00011806821,0.00019888986,0.00016171132,0.000095404255,0.00016419886],"domain_scores_gemma":[0.99954784,0.000008483626,0.00009018191,0.00019273272,0.00010427741,0.0000565029],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023771824,0.000118599906,0.000094472445,0.0000516095,0.00027676168,0.00006246534,0.00015609777,0.00010201345,0.000016635757],"category_scores_gemma":[0.000047228117,0.000090378504,0.00006689904,0.000087243556,0.0001406241,0.0000036880276,0.00010372159,0.00016643759,0.000005466668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003071387,0.000026589887,0.0010100949,0.0000074620652,0.00006611201,0.0000024512667,0.000062830186,0.00025173885,0.99422723,0.0029018787,0.0012678892,0.0001450036],"study_design_scores_gemma":[0.007948961,0.0018500789,0.35540864,0.0005931142,0.0011296127,0.005151296,0.005679072,0.010973254,0.48759308,0.016268322,0.105193526,0.0022110427],"about_ca_topic_score_codex":0.000009393032,"about_ca_topic_score_gemma":0.000041593383,"teacher_disagreement_score":0.5066342,"about_ca_system_score_codex":0.000033280634,"about_ca_system_score_gemma":0.0001132488,"threshold_uncertainty_score":0.36855283},"labels":[],"label_agreement":null},{"id":"W4409739864","doi":"10.1093/ismejo/wraf078","title":"Fireworms are a reservoir and potential vector for coral-infecting apicomplexans","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Agencia Estatal de Investigación; Generalitat de Catalunya; University of Miami","keywords":"Biology; Anthozoa; Ecology; Coral reef; Reef; Coral; Habitat; Ecosystem; Host (biology); Cnidaria; Ecosystem engineer","score_opus":0.012624235873159566,"score_gpt":0.24205204039328646,"score_spread":0.2294278045201269,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409739864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874509,0.00013055766,0.0016287649,0.008278021,0.000478172,0.00018656447,0.000004074309,0.000017138622,0.0018258063],"genre_scores_gemma":[0.99592173,0.0000402183,0.00015328002,0.00020934768,0.00018896502,0.000010988101,3.4204095e-7,0.000004830641,0.0034702974],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993989,0.000034130935,0.00015651945,0.000108128836,0.00010815551,0.00019419266],"domain_scores_gemma":[0.9996807,0.00008037402,0.00009399788,0.00009229756,0.0000125188835,0.00004012003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003386535,0.000083173974,0.00012714932,0.000018549254,0.0007555632,0.00007703192,0.00014951137,0.000021685924,0.00014769923],"category_scores_gemma":[0.0000721723,0.000047605958,0.000060065588,0.00008979575,0.000064286156,0.000095323936,0.00032256547,0.00015485846,0.000014110314],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033228358,0.0002010361,0.66389644,0.00017786352,0.0003470035,0.000037069527,0.002256179,0.0007727812,0.012918346,0.0011990757,0.23937324,0.07848871],"study_design_scores_gemma":[0.0008563234,0.00012857592,0.9258924,0.00009977047,0.000067646135,0.00016471013,0.0007673344,0.0036834287,0.00016504523,0.015583028,0.0524251,0.0001666088],"about_ca_topic_score_codex":0.00013675769,"about_ca_topic_score_gemma":0.00037453894,"teacher_disagreement_score":0.261996,"about_ca_system_score_codex":0.00006199999,"about_ca_system_score_gemma":0.000006682778,"threshold_uncertainty_score":0.58112574},"labels":[],"label_agreement":null},{"id":"W4410267570","doi":"10.1093/ismejo/wraf091","title":"Chromosomal capture of beneficial genes drives plasmids toward ecological redundancy","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"H2020 Marie Skłodowska-Curie Actions; HORIZON EUROPE Framework Programme; Okinawa Institute of Science and Technology Graduate University; Queen's University; Queen's University Belfast; UK Research and Innovation","keywords":"Plasmid; Biology; Gene; Genetics; Chromosome; Genome; Phenotype; Ecological niche; Ecology","score_opus":0.012917124734449522,"score_gpt":0.2251541163931384,"score_spread":0.21223699165868887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410267570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98743385,0.0007619665,0.000003102332,0.009900354,0.0004790776,0.00009255243,0.000023809245,0.000020806256,0.001284459],"genre_scores_gemma":[0.99849236,0.00007021018,0.00012863647,0.0003358504,0.0005698671,0.000003448696,0.000004261129,8.2907644e-7,0.00039453467],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988418,0.00014547426,0.00032728908,0.00015539522,0.00024965676,0.00028037088],"domain_scores_gemma":[0.99938947,0.00021618835,0.00017195773,0.000057525907,0.0001001655,0.000064702544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003126275,0.00013937481,0.00023095698,0.000017988013,0.00037757744,0.000071131304,0.0005889644,0.00014662906,0.0006858543],"category_scores_gemma":[0.000077657474,0.000040555606,0.00021014253,0.00029102716,0.00015741312,0.00008124258,0.00012932187,0.0003465591,0.000013812738],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072310606,0.00020962117,0.01646906,0.000010428292,0.00012192593,0.000014566354,0.00039487096,0.000011761651,0.95713717,0.0015571602,0.0035668174,0.020434314],"study_design_scores_gemma":[0.0005684424,0.0006949487,0.67429,0.00013081892,0.00017620971,0.0003005269,0.001814793,0.00005950138,0.2959309,0.015290799,0.010349566,0.0003935039],"about_ca_topic_score_codex":0.00004912128,"about_ca_topic_score_gemma":0.00007649454,"teacher_disagreement_score":0.6612063,"about_ca_system_score_codex":0.000039666145,"about_ca_system_score_gemma":0.00003908462,"threshold_uncertainty_score":0.7509623},"labels":[],"label_agreement":null},{"id":"W4410941984","doi":"10.1093/ismejo/wraf114","title":"<i>In vitro</i> biofilm formation by a beneficial bacterium partially predicts <i>in planta</i> protection against rhizosphere pathogens","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biofilm; Biology; Rhizosphere; Microbiology; Pathogen; Mutant; Human pathogen; Abiotic component; Bacteria; Genetics; Gene; Ecology","score_opus":0.010461395923062628,"score_gpt":0.202066318546191,"score_spread":0.19160492262312837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410941984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935683,0.0001224102,0.000048272526,0.0046912283,0.0004291161,0.00022042962,0.00015106639,0.000017370232,0.00075181865],"genre_scores_gemma":[0.99844635,0.000273385,0.000015440428,0.0007990193,0.00017950528,0.000016117487,0.000063464075,8.2090327e-7,0.00020590844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898404,0.00018274372,0.00035363622,0.00010533987,0.00011689848,0.00025734561],"domain_scores_gemma":[0.99966973,0.00006393559,0.00014566795,0.000044894972,0.000039248487,0.00003652198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041477752,0.00011434663,0.00013576355,0.000023432185,0.0003306514,0.00014340773,0.00022497181,0.0000888426,0.000074080555],"category_scores_gemma":[0.000024816465,0.000043418502,0.0000690806,0.00029693477,0.000021644506,0.0003956571,0.00004210562,0.000486207,0.000015577863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019648272,0.00009595703,0.00011855135,0.0000036504482,0.0000061665887,0.000005176722,0.00007793672,0.000037137168,0.9691062,0.0000042737456,0.005193314,0.025155185],"study_design_scores_gemma":[0.0011778463,0.00036363804,0.03257286,0.00039265899,0.000033260803,0.000509952,0.0016132231,0.003173178,0.7643124,0.0006690757,0.19475785,0.00042407704],"about_ca_topic_score_codex":0.0003600638,"about_ca_topic_score_gemma":0.0017981355,"teacher_disagreement_score":0.20479378,"about_ca_system_score_codex":0.0000881917,"about_ca_system_score_gemma":0.000020847487,"threshold_uncertainty_score":0.25431368},"labels":[],"label_agreement":null},{"id":"W4412119899","doi":"10.1093/ismejo/wraf145","title":"Endophytic commensal bacteria capitalize on the AvrPto-FER pathway to enhance proliferation during early stages of pathogen invasion","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Key Research and Development Program of China; Central South University of Forestry and Technology; Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; Zhejiang University; Chinese Academy of Sciences; Natural Science Foundation of Hunan Province; Central South University; Institute of Genetics; National Natural Science Foundation of China","keywords":"Biology; Pseudomonas syringae; Pathogen; Microbiology; Gammaproteobacteria; Bacteria; Effector; Alphaproteobacteria; Cell biology; Genetics","score_opus":0.016381242659642893,"score_gpt":0.2345390708396293,"score_spread":0.2181578281799864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412119899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941315,0.00003540724,0.000006546623,0.0050782813,0.00023691365,0.0001679193,0.000045122753,0.000008636694,0.00028968902],"genre_scores_gemma":[0.99869,0.000051827275,0.000014690228,0.0005139529,0.0001266134,0.000007431489,0.000004671442,6.883234e-7,0.00059010746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920005,0.00022985812,0.00021954704,0.000083356405,0.00012135996,0.00014580748],"domain_scores_gemma":[0.99944913,0.00023999909,0.00011764328,0.000076208846,0.000084979336,0.000032019907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003591958,0.00008817177,0.00010606341,0.00001571457,0.0005398603,0.00012487386,0.00028610113,0.000032453292,0.00026134995],"category_scores_gemma":[0.00006214088,0.000024613792,0.000058080746,0.00013963423,0.000026961185,0.00010593995,0.00007046877,0.00026747092,0.00002513454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000822346,0.000046874997,0.0012081807,0.0000024429842,0.000014939688,0.000001348171,0.0002776221,0.000005010252,0.9947279,0.00010992737,0.00040491458,0.003118612],"study_design_scores_gemma":[0.00007807403,0.00029770972,0.36317408,0.00014935585,0.000009390079,0.000030806706,0.00035866236,0.000006140464,0.6324949,0.0003309628,0.0029918866,0.00007803958],"about_ca_topic_score_codex":0.00006648111,"about_ca_topic_score_gemma":0.00006724086,"teacher_disagreement_score":0.36223298,"about_ca_system_score_codex":0.000034210025,"about_ca_system_score_gemma":0.000015334734,"threshold_uncertainty_score":0.41522232},"labels":[],"label_agreement":null},{"id":"W4412393938","doi":"10.1093/ismejo/wraf147","title":"Distinct lactate utilization strategies drive niche differentiation between two co-existing <i>Megasphaera</i> species in the rumen microbiome","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Österreichische Forschungsförderungsgesellschaft; Bundesministerium für Wissenschaft, Forschung und Wirtschaft; Bundesministerium für Klimaschutz, Umwelt, Energie, Mobilität, Innovation und Technologie; Bundesministerium für Digitalisierung und Wirtschaftsstandort; Österreichische Nationalstiftung für Forschung, Technologie und Entwicklung","keywords":"Rumen; Propionate; Biology; Butyrate; Biochemistry; Microbiome; Metabolic pathway; Food science; Metabolism; Fermentation; Bioinformatics","score_opus":0.06604793800154886,"score_gpt":0.31217143807724007,"score_spread":0.24612350007569123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412393938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883519,0.000117566036,0.0001338996,0.0074297525,0.000109264285,0.00014680065,0.000027371017,0.000016331238,0.0036671052],"genre_scores_gemma":[0.9988411,0.00010094247,0.000008848933,0.00033834536,0.00032544584,0.0000052500345,0.0000816699,6.844761e-7,0.00029768105],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988589,0.00038876032,0.00027490535,0.00012767797,0.00012818909,0.00022152346],"domain_scores_gemma":[0.99920535,0.0004952379,0.00016733872,0.000045234487,0.00006185401,0.000025008654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039549315,0.000116432675,0.00015239578,0.000023949027,0.0005488837,0.00026201384,0.0003423628,0.000041351326,0.00008967278],"category_scores_gemma":[0.000044452205,0.000034493285,0.00007054859,0.00033659814,0.00012669839,0.00019567765,0.000038482074,0.00025992928,0.00001039234],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012788053,0.00028883512,0.24338944,0.000020770967,0.00006851855,0.000010065833,0.0014114351,0.000036837246,0.7094047,0.014172106,0.0064508254,0.024618613],"study_design_scores_gemma":[0.00028312395,0.00007806494,0.9725463,0.000047572816,0.000020863154,0.000012965005,0.0025853354,0.00003820659,0.0019359993,0.015772486,0.006594973,0.00008416046],"about_ca_topic_score_codex":0.000085770735,"about_ca_topic_score_gemma":0.00029386155,"teacher_disagreement_score":0.7291568,"about_ca_system_score_codex":0.000033088796,"about_ca_system_score_gemma":0.000016125021,"threshold_uncertainty_score":0.42216253},"labels":[],"label_agreement":null},{"id":"W4412572678","doi":"10.1093/ismejo/wraf144","title":"Eco-evolutionary robustness of wild bacterial communities to experimental perturbation","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Ecology; Biological dispersal; Metagenomics; Genetic diversity; Biodiversity; Population; Evolutionary ecology; Evolutionary biology; Gene; Genetics","score_opus":0.012739051067407565,"score_gpt":0.24640405139951457,"score_spread":0.23366500033210702,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412572678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934987,0.000036622987,0.00025487645,0.0016582309,0.00055812445,0.00007911629,0.000003983233,0.0000056691606,0.0039046647],"genre_scores_gemma":[0.9981261,0.000012301339,0.00030007353,0.0005602775,0.00007538058,0.0000025771408,0.000007202342,0.0000030653546,0.0009130208],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992376,0.0003765422,0.00016410952,0.000040745843,0.00006113334,0.00011988034],"domain_scores_gemma":[0.99958646,0.00012288918,0.00006922792,0.00018415862,0.000010590389,0.000026671769],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00027348733,0.00006570413,0.00010545889,0.000032695854,0.00048622955,0.000011908584,0.0004412028,0.000048578186,0.008885837],"category_scores_gemma":[0.000013217355,0.00004814332,0.000042894502,0.00009184832,0.0002375313,0.00009876398,0.0003247993,0.00026189565,0.000042885178],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010083015,0.0008072497,0.0073030526,0.000014446602,0.00014443767,0.0000018266594,0.01716946,0.09937331,0.49100795,0.001989098,0.37933078,0.0018500761],"study_design_scores_gemma":[0.00443039,0.0023945246,0.6191173,0.00031082323,0.0001864205,0.0005968365,0.035741784,0.009567359,0.06773428,0.019354247,0.23943889,0.0011271052],"about_ca_topic_score_codex":0.00014986344,"about_ca_topic_score_gemma":0.00022671373,"teacher_disagreement_score":0.6118143,"about_ca_system_score_codex":0.00009836872,"about_ca_system_score_gemma":0.000021273507,"threshold_uncertainty_score":0.9920202},"labels":[],"label_agreement":null},{"id":"W4413104706","doi":"10.1093/ismejo/wraf166","title":"Central metabolism and development are rewired in lichenized cyanobacteria","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Biodiversity Monitoring Institute; National Science Foundation","keywords":"Biology; Cyanobacteria; Ecology; Evolutionary biology; Bacteria; Genetics","score_opus":0.01331252206214168,"score_gpt":0.20623264466467361,"score_spread":0.19292012260253194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413104706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902861,0.00037011006,0.000003126498,0.008518117,0.00029280677,0.00006757188,0.0000016691865,0.0000088387405,0.00045166156],"genre_scores_gemma":[0.9981281,0.000119592085,0.00011748721,0.0009906989,0.00015962037,0.0000032929493,0.0000016323827,3.3155382e-7,0.00047925007],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992924,0.000113778246,0.0001959332,0.00009302674,0.00006926789,0.00023561553],"domain_scores_gemma":[0.99973303,0.00008879272,0.000073012656,0.000023363644,0.000023760293,0.000058022608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033925823,0.00007488395,0.00014634356,0.000012961199,0.0002115011,0.00007692366,0.00017469154,0.00005679852,0.00022023487],"category_scores_gemma":[0.000041828574,0.000021757149,0.000027008837,0.00014072779,0.000035151286,0.00005889736,0.00007368385,0.00019792354,0.0000059535923],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044013452,0.0004286821,0.37596276,0.00001528166,0.00021233645,0.0000533537,0.004460176,0.000007494757,0.34129238,0.0018559985,0.006015563,0.26925585],"study_design_scores_gemma":[0.00031497568,0.00001190492,0.9540029,0.000013374529,0.0000064586666,0.000023636176,0.0003831467,0.000008356064,0.0016125715,0.00088303426,0.04268333,0.000056276564],"about_ca_topic_score_codex":0.000031063686,"about_ca_topic_score_gemma":0.0005304242,"teacher_disagreement_score":0.5780402,"about_ca_system_score_codex":0.000027931128,"about_ca_system_score_gemma":0.000025336498,"threshold_uncertainty_score":0.24114174},"labels":[],"label_agreement":null},{"id":"W4414986504","doi":"10.1093/ismejo/wraf226","title":"Exceptionally high carbon fixation and nitrogen assimilation rates in microbial mats of an alkaline soda lake","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia, Okanagan Campus; Oncolytics Biotech (Canada); University of Calgary","funders":"Alliance de recherche numérique du Canada; Canada First Research Excellence Fund; Canada Research Chairs; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Alberta; University of Calgary","keywords":"Ammonium; Cyanobacteria; Microbial mat; Heterotroph; Nitrogen fixation; Nitrogen; Nitrogen assimilation; Assimilation (phonology); Carbon fixation; Nitrogen cycle","score_opus":0.007799561658516775,"score_gpt":0.24243429800509622,"score_spread":0.23463473634657944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414986504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981314,0.000012318166,0.000039302795,0.0011513688,0.00008587992,0.000062619554,0.0000051930006,0.0000029159191,0.00050902204],"genre_scores_gemma":[0.99928105,0.000026817112,0.00023709603,0.0003245444,0.000034703367,0.0000010052286,0.000022307688,0.0000023746818,0.00007011751],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99933386,0.00030102226,0.00017340085,0.000059993814,0.000044220662,0.000087518136],"domain_scores_gemma":[0.99971384,0.00007209758,0.00010216386,0.00008567245,0.000009725975,0.000016479009],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00045895256,0.000052838615,0.00009101611,0.000039724284,0.00013354489,0.000009795127,0.00013921777,0.00005939138,0.0010809648],"category_scores_gemma":[0.000018715093,0.000040138282,0.000015928454,0.00009189273,0.00012620904,0.00008669411,0.00007787183,0.00021396475,0.000004838015],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016102208,0.00011821943,0.08092951,0.000006047385,0.000020379382,0.0000014455195,0.0007964022,0.004574689,0.9103679,0.00019272244,0.0012938724,0.0015378075],"study_design_scores_gemma":[0.00049152575,0.00007535419,0.9513734,0.000015251536,0.0000148517565,0.000024371511,0.00006214684,0.0010187918,0.0056407037,0.040743534,0.00048403942,0.00005602959],"about_ca_topic_score_codex":0.00023548449,"about_ca_topic_score_gemma":0.00661594,"teacher_disagreement_score":0.90472716,"about_ca_system_score_codex":0.000032664026,"about_ca_system_score_gemma":0.000017241935,"threshold_uncertainty_score":0.99983215},"labels":[],"label_agreement":null},{"id":"W4415948522","doi":"10.1093/ismejo/wraf248","title":"Competitive fitness of <i>Staphylococcus aureus</i> against nasal commensals depends on biotin biosynthesis and acquisition","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Innovation Cluster (Canada)","funders":"","keywords":"Auxotrophy; Biotin; Commensalism; Microbiome; Pathogen; Staphylococcus aureus; Human pathogen","score_opus":0.005265912718123122,"score_gpt":0.239635161143386,"score_spread":0.23436924842526288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415948522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9828592,0.0027570513,0.00016050527,0.005586356,0.00027786414,0.00010161575,0.00003562349,0.000006414307,0.008215378],"genre_scores_gemma":[0.99583346,0.0022175438,0.000083460916,0.0014475925,0.00012953965,0.0000014514654,0.0000072725097,0.000007814783,0.00027186397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927074,0.00013569203,0.00020837644,0.00013168534,0.000100121084,0.00015340153],"domain_scores_gemma":[0.999526,0.00006439668,0.0001317656,0.00015054988,0.00009097355,0.00003626799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030881856,0.00012608414,0.00016589918,0.000058386122,0.00026195875,0.000023984245,0.00015481315,0.00013639759,0.000008278514],"category_scores_gemma":[0.00003929487,0.00007887363,0.00008471556,0.00008679628,0.00021531618,0.0000021923488,0.00010515298,0.00021374748,0.0000013329638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002293602,0.0001237917,0.0014235869,0.000029524495,0.0004952552,0.000005261354,0.00018336145,0.000043986813,0.98069495,0.0014080366,0.00896411,0.006398756],"study_design_scores_gemma":[0.0010278206,0.00032632973,0.01082707,0.00025912683,0.000090986316,0.000020728638,0.0010158864,0.000023311082,0.9640088,0.00030397315,0.021924626,0.00017135119],"about_ca_topic_score_codex":0.0000033917745,"about_ca_topic_score_gemma":0.0000062804083,"teacher_disagreement_score":0.01668618,"about_ca_system_score_codex":0.000010133184,"about_ca_system_score_gemma":0.000032760767,"threshold_uncertainty_score":0.3216373},"labels":[],"label_agreement":null},{"id":"W4416412575","doi":"10.1093/ismejo/wraf239","title":"Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; Hôpital Charles-Le Moyne; Canadian Institute for Advanced Research","funders":"Gordon and Betty Moore Foundation","keywords":"Safeguarding; Commission; European union; Nature Conservation; Group (periodic table)","score_opus":0.01701469750464557,"score_gpt":0.24968581981224083,"score_spread":0.23267112230759526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416412575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9357018,0.000019016677,0.0008262299,0.059785932,0.0016471742,0.0002851018,0.00008923784,0.0000037022394,0.0016418289],"genre_scores_gemma":[0.9974164,0.000023390188,0.0001990789,0.0010270707,0.00016229255,0.0000012975727,0.00001365926,0.0000031507234,0.00115366],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989352,0.00028947063,0.00026413088,0.00009033616,0.00028132123,0.00013948971],"domain_scores_gemma":[0.99918514,0.00027597352,0.00030539307,0.00014895442,0.00006138404,0.000023164137],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017800597,0.00007452762,0.00011641684,0.000042129057,0.00060626207,0.000051298855,0.0007357233,0.00008184885,0.0002605471],"category_scores_gemma":[0.00031081165,0.00003967487,0.00010899255,0.00019308139,0.00044388638,0.00013381762,0.00033246863,0.00039612796,0.0000032238258],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047981745,0.000086135995,0.17907602,0.000015120747,0.00010058629,7.4473826e-7,0.00065039494,0.00022564117,0.60747874,0.0053900736,0.20605378,0.00044292177],"study_design_scores_gemma":[0.0015060363,0.00009419757,0.77534753,0.0000866042,0.00006199688,0.000036752317,0.00128505,0.00077185384,0.06774493,0.00460234,0.14835685,0.00010585847],"about_ca_topic_score_codex":0.0004346096,"about_ca_topic_score_gemma":0.0016128999,"teacher_disagreement_score":0.5962715,"about_ca_system_score_codex":0.00017949361,"about_ca_system_score_gemma":0.00006802613,"threshold_uncertainty_score":0.4662939},"labels":[],"label_agreement":null},{"id":"W4416890315","doi":"10.1093/ismejo/wraf266","title":"Milk IgA promotes symbionts and limits pathobionts in the early life gut","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Colonization; Immunoglobulin A; Secretory IgA; Antibody; Gut flora; Escherichia coli; Proteus; Bacteria; Microbiome","score_opus":0.02271300953382039,"score_gpt":0.3004925239264043,"score_spread":0.2777795143925839,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416890315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.908496,0.001310183,0.000021390231,0.08736113,0.0005469416,0.0002603608,0.000004262503,0.000015193582,0.001984501],"genre_scores_gemma":[0.9904299,0.00026839928,0.00010165737,0.008674922,0.00028514926,0.0000050084523,8.7244274e-7,0.0000073445462,0.00022676817],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99878836,0.0003613132,0.0002909063,0.00009950377,0.00020351695,0.00025639395],"domain_scores_gemma":[0.99944323,0.00016918893,0.00010191482,0.00015799061,0.000060399936,0.00006726271],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011807429,0.00009630304,0.0001408031,0.00011532743,0.0005094229,0.00017245543,0.00023603743,0.00007012251,0.000025431478],"category_scores_gemma":[0.00014001182,0.000052799896,0.000047076803,0.00019971198,0.000059814793,0.00011611875,0.000020961992,0.0006059973,0.000016392345],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037531187,0.002045137,0.18800408,0.00081190845,0.0002784498,0.00030108594,0.1505165,0.000027988135,0.031280544,0.019157724,0.40826234,0.19556114],"study_design_scores_gemma":[0.0028030444,0.00036844058,0.9438641,0.00087255065,0.000062306346,0.0004338795,0.0026114609,0.00027223746,0.0007932235,0.025845468,0.021871535,0.00020174417],"about_ca_topic_score_codex":0.000060761584,"about_ca_topic_score_gemma":0.000054887907,"teacher_disagreement_score":0.75586003,"about_ca_system_score_codex":0.00005379241,"about_ca_system_score_gemma":0.000072959454,"threshold_uncertainty_score":0.39181206},"labels":[],"label_agreement":null},{"id":"W4417238925","doi":"10.1093/ismejo/wraf275","title":"Co-occurrence is associated with horizontal gene transfer across marine bacteria independent of phylogeny","year":2025,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of New Brunswick","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Horizon 2020 Framework Programme","keywords":"Horizontal gene transfer; Phylogenetic tree; Phylogenetics; Metagenomics; Taxon; Phylogenetic diversity; Genome; Marine bacteriophage","score_opus":0.009527991641982333,"score_gpt":0.25336595298768694,"score_spread":0.2438379613457046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417238925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979244,0.0004344664,0.00047164274,0.00019769784,0.00019219084,0.00010010064,0.0003014434,0.0000013504183,0.00037670796],"genre_scores_gemma":[0.9988222,0.0005146216,0.000072178824,0.00020385662,0.00009795557,0.000004545979,0.00003217599,0.000008033363,0.00024443804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991644,0.000060296865,0.00023888821,0.00015710806,0.00014175643,0.00023753411],"domain_scores_gemma":[0.99951816,0.000015424483,0.000087833745,0.00020036113,0.0001343831,0.00004386733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003119283,0.0001430185,0.00019051829,0.000020556196,0.0001968768,0.00003116342,0.00028727547,0.00008346146,0.00003784999],"category_scores_gemma":[0.000018249362,0.000092719514,0.000099197685,0.00007639651,0.00013020501,9.3594673e-7,0.000083409315,0.00016191781,0.0000010439552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017929506,0.00007209369,0.02052685,0.000006027711,0.00056606083,0.0000035754438,0.00036816308,0.000021654943,0.97525215,0.000013430039,0.00077846646,0.0022122294],"study_design_scores_gemma":[0.0014277459,0.0005380082,0.2915471,0.00002504714,0.0000911699,0.00008517604,0.000263667,0.0000071979352,0.7017915,0.00017180125,0.003875201,0.00017634511],"about_ca_topic_score_codex":0.000013508741,"about_ca_topic_score_gemma":0.00006479716,"teacher_disagreement_score":0.2734606,"about_ca_system_score_codex":0.000017354034,"about_ca_system_score_gemma":0.000112599744,"threshold_uncertainty_score":0.3780992},"labels":[],"label_agreement":null}]}