{"meta":{"query_hash":"a7829a503d25","filters":{"venue":"The Journal of Pathology"},"cohort_total":318,"direct_labels_cover":0,"predictions_cover":318,"exported":318,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/a7829a503d25","api":"https://metacan.xera.ac/api/v1/cohort?venue=The+Journal+of+Pathology"},"results":[{"id":"W1485376748","doi":"10.1002/path.2550","title":"Overexpression of Akt/PKB modulates N‐myristoyltransferase activity in cancer cells","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Protein Kinase Regulation and GTPase Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Cancer Agency; University of Saskatchewan","funders":"","keywords":"Protein kinase B; Breast cancer; Cancer research; Phosphorylation; Cancer; Western blot; MCF-7; Cancer cell; PI3K/AKT/mTOR pathway; Chemistry; Biology; Internal medicine; Signal transduction; Medicine; Cell biology; Biochemistry; Human breast; Gene","score_opus":0.011835602254425743,"score_gpt":0.2720559926061217,"score_spread":0.2602203903516959,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1485376748","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99598867,0.0011274705,0.00088603515,0.00010582534,0.000040082617,0.000032221298,0.0005167384,0.00007676573,0.0012261159],"genre_scores_gemma":[0.9938909,0.0011277911,0.0013695176,0.000054025768,0.000008017947,0.00006799045,0.0011473553,0.00001425028,0.0023200964],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998425,0.000023959466,0.000022180133,0.0000310535,0.000034172142,0.000046101188],"domain_scores_gemma":[0.9999337,0.000012079729,0.000014739289,0.0000106984335,0.000009120049,0.00001958685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016649808,0.0002346534,0.00026568308,0.00020485662,0.00018233634,0.00032742103,0.00014725937,0.0002381397,0.0013060301],"category_scores_gemma":[0.00011627692,0.00016447392,0.00026667636,0.00036284217,0.00016096643,0.00017923173,0.00014513628,0.0005208878,0.0004998637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019929992,0.000077644596,0.0003013308,0.000037074376,0.0000061256405,0.000034633165,0.000020705647,0.000065306216,0.99837995,0.00006049384,0.00007712776,0.0007402808],"study_design_scores_gemma":[0.00004845145,0.0007143868,0.00932256,0.000007944408,0.000025742165,0.0002370662,0.000058105434,0.0019849,0.9849423,0.000048121234,0.0026029726,0.0000074227705],"about_ca_topic_score_codex":0.0008079076,"about_ca_topic_score_gemma":0.00094397087,"teacher_disagreement_score":0.0013060301,"about_ca_system_score_codex":0.00030350595,"about_ca_system_score_gemma":0.00022303007,"threshold_uncertainty_score":0.00436908},"labels":[],"label_agreement":null},{"id":"W1487410601","doi":"10.1002/path.4105","title":"Clonal evolution of high‐grade serous ovarian carcinoma from primary to recurrent disease","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre; University of Victoria; Simon Fraser University; BC Cancer Agency","funders":"U.S. Department of Defense","keywords":"Biology; Somatic cell; Somatic evolution in cancer; Exome; Cancer research; Ovarian cancer; Ovarian carcinoma; Germline mutation; Exome sequencing; Mutation; Cancer; Genetics; Gene","score_opus":0.01009694581240434,"score_gpt":0.23523739022908052,"score_spread":0.2251404444166762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1487410601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99944454,0.000117020405,0.00012457719,0.0000068268428,8.60701e-7,0.00000484073,0.000043184602,0.000005061516,0.00025305108],"genre_scores_gemma":[0.99944466,0.000090272304,0.00018142704,0.000011044873,0.0000025053005,0.0000050914064,0.00013980275,0.000004298801,0.00012094328],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99989855,0.000015003432,0.000009503423,0.000023985478,0.000029633198,0.000023219427],"domain_scores_gemma":[0.99962544,0.00011291107,0.00010305368,0.000046907913,0.00005379281,0.000057896978],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016262193,0.00007281912,0.00015725607,0.0004923785,0.00022519442,0.00033486134,0.00011859342,0.00018799449,0.0009871343],"category_scores_gemma":[0.00093977683,0.000092596856,0.00012658643,0.0003197128,0.00017785466,0.000118938144,0.00024607067,0.00015854232,0.00014128721],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005831776,0.00006025564,0.60871524,0.000074009404,0.00005981302,0.0040557813,0.00068770704,0.00050090236,0.35428122,0.00024177619,0.00020340897,0.030536715],"study_design_scores_gemma":[0.000014946335,0.00030247198,0.9672936,0.000008336169,0.000050819304,0.01164049,0.00018620653,0.00088198145,0.01840026,0.00018370504,0.0010280719,0.000009107298],"about_ca_topic_score_codex":0.00069770025,"about_ca_topic_score_gemma":0.0016048676,"teacher_disagreement_score":0.0009871343,"about_ca_system_score_codex":0.00021600172,"about_ca_system_score_gemma":0.00011807425,"threshold_uncertainty_score":0.0033023357},"labels":[],"label_agreement":null},{"id":"W1487620770","doi":"10.1002/path.4257","title":"C1q‐tumour necrosis factor‐related protein 8 (<scp>CTRP8</scp>) is a novel interaction partner of relaxin receptor <scp>RXFP1</scp> in human brain cancer cells","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pregnancy-related medical research","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Biology; Leucine-rich repeat; Relaxin; Cell biology; Receptor; Molecular biology; Kinase; Biochemistry","score_opus":0.035452653633657474,"score_gpt":0.3391610146903951,"score_spread":0.30370836105673765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1487620770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995833,0.0007724776,0.0024682793,0.000061061844,0.0000069174216,0.000014005689,0.00015105557,0.000043491105,0.0006497474],"genre_scores_gemma":[0.99512523,0.00030679643,0.0028170212,0.000026112986,0.000004172865,0.000026194246,0.000499477,0.000008161273,0.0011868628],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986875,0.00002431535,0.0000049362284,0.00004067184,0.000036160207,0.000025250229],"domain_scores_gemma":[0.9999689,0.000004611755,0.00000875877,0.0000032564367,0.0000042282404,0.000010335452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010331608,0.00025315685,0.00025642,0.00009657461,0.00019923497,0.00021840693,0.00024767287,0.0002511049,0.0009255696],"category_scores_gemma":[0.0000757727,0.00012823677,0.00023794181,0.00011040865,0.00014902522,0.00014475992,0.00019918369,0.0003107918,0.0004237468],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097377764,0.000010900702,0.00030666403,0.00002249368,0.0000055526075,0.00014339865,0.000014014569,0.00024327837,0.998365,0.00007950547,0.000050904702,0.00066092814],"study_design_scores_gemma":[0.000040089624,0.0003682274,0.0055616274,0.0000062224303,0.000024548963,0.002138666,0.000037555055,0.004613764,0.9819671,0.000055307322,0.0051773516,0.000009566284],"about_ca_topic_score_codex":0.0013331479,"about_ca_topic_score_gemma":0.0012961371,"teacher_disagreement_score":0.0013331479,"about_ca_system_score_codex":0.00040897288,"about_ca_system_score_gemma":0.00015253093,"threshold_uncertainty_score":0.003096342},"labels":[],"label_agreement":null},{"id":"W1490367611","doi":"10.1002/path.4165","title":"Insulin‐like growth factor‐<scp>II</scp> is produced by, signals to and is an important survival factor for the mature podocyte in man and mouse","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal Diseases and Glomerulopathies","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"Medical Research Council; Kidney Research UK; British Heart Foundation","keywords":"Podocyte; Biology; Albuminuria; Insulin-like growth factor; Growth factor; Endocrinology; Genetically modified mouse; Internal medicine; Cell biology; Cancer research; Transgene; Receptor; Kidney; Medicine; Gene; Genetics","score_opus":0.02052860165622713,"score_gpt":0.2762680390236861,"score_spread":0.25573943736745897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1490367611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9469699,0.008340128,0.019078583,0.000871333,0.0004853615,0.000080771984,0.0031567027,0.000756196,0.020260926],"genre_scores_gemma":[0.9500591,0.0039276234,0.009356258,0.00024819543,0.0001048719,0.000069236674,0.0029516863,0.000118692486,0.033164237],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990344,0.0000100586885,0.000007816506,0.000023591227,0.00004004588,0.000014933044],"domain_scores_gemma":[0.999902,0.000007086644,0.000024966095,0.000010429246,0.000010126898,0.00004537375],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007872737,0.0004061431,0.00015658978,0.00039819142,0.00015939555,0.000360682,0.00013446066,0.00020929439,0.004457583],"category_scores_gemma":[0.00007787816,0.00012419882,0.00021312213,0.00020828744,0.00036205002,0.00016198355,0.00019835452,0.0006812091,0.0012063915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009747053,0.00001575584,0.00029890818,0.00003787727,0.000006440999,0.00014138894,0.000007766505,0.000026303258,0.9951525,0.0003749594,0.00027647073,0.0035641564],"study_design_scores_gemma":[0.00004920465,0.00036954728,0.02021758,0.000036105164,0.000037616217,0.0018723664,0.00005728528,0.00068643555,0.91838425,0.0002842587,0.057992138,0.000013250199],"about_ca_topic_score_codex":0.00086945604,"about_ca_topic_score_gemma":0.0012158129,"teacher_disagreement_score":0.004457583,"about_ca_system_score_codex":0.00033772708,"about_ca_system_score_gemma":0.0002550339,"threshold_uncertainty_score":0.014912128},"labels":[],"label_agreement":null},{"id":"W1496522307","doi":"10.1002/path.4568","title":"<scp>miRNAs</scp> dysregulated in association with Gleason grade regulate extracellular matrix, cytoskeleton and androgen receptor pathways","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"TGF-β signaling in diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; St. Michael's Hospital","funders":"Canadian Institutes of Health Research; Prostate Cancer Canada","keywords":"microRNA; Biology; Extracellular matrix; Focal adhesion; Prostate cancer; Signal transduction; Actin cytoskeleton; Cancer research; Androgen receptor; Metastasis; Cell biology; Cytoskeleton; Bioinformatics; Gene; Cell; Cancer; Genetics","score_opus":0.01276601117801425,"score_gpt":0.23429156199723927,"score_spread":0.22152555081922504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1496522307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8319089,0.027588548,0.025329258,0.0057014152,0.0017692371,0.00037118237,0.06532467,0.0032485328,0.03875833],"genre_scores_gemma":[0.91993284,0.0050439388,0.023762869,0.00181518,0.0004910012,0.0003506599,0.025947874,0.0006603856,0.021995287],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997334,0.000038483056,0.000035587243,0.00006942982,0.00009526157,0.000027792767],"domain_scores_gemma":[0.99952936,0.000113610266,0.00019868457,0.00004027524,0.00007334139,0.000044796194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018654886,0.00046281418,0.0004870196,0.00052028685,0.00027444,0.0007401789,0.00020445466,0.00040368026,0.0082908105],"category_scores_gemma":[0.0005607562,0.00016894632,0.0003790068,0.00064540317,0.00022043288,0.00023290701,0.00021973581,0.00059779297,0.0023298808],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013853721,0.00007246547,0.026104815,0.0010920332,0.00024216349,0.0025208471,0.00013657533,0.0010190777,0.883423,0.0020562727,0.020875722,0.061071716],"study_design_scores_gemma":[0.00014893888,0.00050090154,0.4399369,0.0001771774,0.00023688683,0.0094503015,0.0001962292,0.0074010347,0.41087148,0.0025532057,0.1284527,0.00007423803],"about_ca_topic_score_codex":0.00086550915,"about_ca_topic_score_gemma":0.0017577091,"teacher_disagreement_score":0.0082908105,"about_ca_system_score_codex":0.00025717117,"about_ca_system_score_gemma":0.00032247187,"threshold_uncertainty_score":0.027735472},"labels":[],"label_agreement":null},{"id":"W1505909540","doi":"10.1002/path.4220","title":"In Brief: Chromothripsis and cancer","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Chromothripsis; Cancer; Biology; Genetics; Genome instability; DNA; DNA damage","score_opus":0.014325158106012592,"score_gpt":0.2926589193670677,"score_spread":0.27833376126105513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1505909540","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012556206,0.42952427,0.0006467771,0.22412322,0.33288103,0.00003799187,0.000545176,0.000099079516,0.010886889],"genre_scores_gemma":[0.0125420075,0.3447575,0.0006016253,0.05578255,0.5477201,0.000043613352,0.00081616384,0.000048502257,0.037687957],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99885666,0.00024853414,0.00016650981,0.00032083582,0.00027107622,0.00013643455],"domain_scores_gemma":[0.9927417,0.003481044,0.00054406846,0.00020546808,0.0013378042,0.0016899185],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00218518,0.0012461619,0.0014107809,0.0026233466,0.0012384782,0.0036887887,0.0012431176,0.0077518574,0.01620922],"category_scores_gemma":[0.006036362,0.000497951,0.000574284,0.0024221002,0.0013514137,0.0023506046,0.0017541727,0.0075562326,0.0071443617],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016130197,0.00003110169,0.0011409321,0.0012171156,0.000060629678,0.0006104736,0.00005841051,0.00013642121,0.0005587346,0.003599786,0.88198686,0.11043824],"study_design_scores_gemma":[0.000038473307,0.00011023624,0.0027539947,0.000830821,0.00009227964,0.0025973388,0.00014614698,0.00016228421,0.0004484543,0.007009799,0.98577106,0.000039040697],"about_ca_topic_score_codex":0.0010492941,"about_ca_topic_score_gemma":0.0022851797,"teacher_disagreement_score":0.01620922,"about_ca_system_score_codex":0.0015325499,"about_ca_system_score_gemma":0.0013610714,"threshold_uncertainty_score":0.054225206},"labels":[],"label_agreement":null},{"id":"W1521770510","doi":"10.1002/path.4218","title":"Cancer‐generated lactic acid: a regulatory, immunosuppressive metabolite?","year":2013,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer, Hypoxia, and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":345,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"BC Cancer Agency; Canadian Institutes of Health Research; BC Cancer Foundation; Recruitment Program of Global Experts; National Natural Science Foundation of China","keywords":"Lactic acid; Immune system; Glutamine; Metabolite; Cancer; Cancer research; Secretion; Cancer cell; Biology; Metabolism; Biochemistry; Chemistry; Immunology; Amino acid; Bacteria; Genetics","score_opus":0.026309014521636274,"score_gpt":0.3168914863783882,"score_spread":0.29058247185675196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1521770510","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010193981,0.99846566,0.00013150414,0.00045330398,0.00021318436,0.0000016971514,0.000008316241,0.000005776914,0.0006186475],"genre_scores_gemma":[0.0010149229,0.9976052,0.00013608675,0.00027875297,0.00023207092,0.0000039529446,0.000016868944,0.0000015581172,0.0007105498],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99989724,0.000017943928,0.000012632453,0.000021112286,0.00003452475,0.000016445872],"domain_scores_gemma":[0.9998487,0.00005006702,0.000023641915,0.0000061823075,0.000045138022,0.000026200578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039080423,0.00073700707,0.0013878781,0.0013272568,0.00028104254,0.0011285702,0.00084150175,0.0014774596,0.0024045946],"category_scores_gemma":[0.00037755223,0.00028236123,0.000299931,0.0013547448,0.0008497487,0.0016670759,0.00062781665,0.0019467089,0.0025537277],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013871113,0.00005254077,0.00022313106,0.009273537,0.00005483336,0.0005196749,0.000057389727,0.00028923177,0.0052067605,0.007573718,0.030227784,0.94638276],"study_design_scores_gemma":[0.000014376985,0.00005732281,0.0004973667,0.0011289179,0.0000369162,0.0023814784,0.000058256508,0.000073238654,0.001289743,0.0032476517,0.991198,0.000016801347],"about_ca_topic_score_codex":0.0008243003,"about_ca_topic_score_gemma":0.0015449749,"teacher_disagreement_score":0.0024045946,"about_ca_system_score_codex":0.00084656174,"about_ca_system_score_gemma":0.0007165806,"threshold_uncertainty_score":0.008044183},"labels":[],"label_agreement":null},{"id":"W1527215597","doi":"10.1002/path.4226","title":"The paracrine effect of cancer‐associated fibroblast‐induced interleukin‐33 regulates the invasiveness of head and neck squamous cell carcinoma","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"IL-33, ST2, and ILC Pathways","field":"Immunology and Microbiology","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Defence Medical Centre","funders":"Tri-Service General Hospital","keywords":"Head and neck squamous-cell carcinoma; Stromal cell; Paracrine signalling; Cancer research; Cancer-Associated Fibroblasts; Cancer cell; Tumor microenvironment; Cancer; Epithelial–mesenchymal transition; Transdifferentiation; Metastasis; Biology; Pathology; Medicine; Cell; Head and neck cancer; Internal medicine","score_opus":0.009828422580994022,"score_gpt":0.23338740085585968,"score_spread":0.22355897827486565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1527215597","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955368,0.002362826,0.00086342986,0.000072891366,0.000018270834,0.000023259961,0.00035830995,0.000037765516,0.0007264089],"genre_scores_gemma":[0.99773765,0.0008346722,0.0006169443,0.00003945501,0.000009940604,0.00002171795,0.00025911,0.000003926038,0.00047651146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999237,0.000015162034,0.00000503747,0.0000134770735,0.00001953651,0.000023076871],"domain_scores_gemma":[0.99993825,0.000010924608,0.000015539264,0.0000042321244,0.000014481811,0.000016712875],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000743173,0.00018376739,0.00014486184,0.00031130007,0.00014603081,0.00018992556,0.000051384603,0.000086912805,0.00081222644],"category_scores_gemma":[0.00010884148,0.00007292649,0.00018073006,0.00015242654,0.00013615677,0.00011118115,0.00011679955,0.00022112187,0.00016857912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019307695,0.000027983475,0.0078869425,0.000057031273,0.00000712249,0.00021808365,0.000059617458,0.000066278306,0.9882101,0.00003966973,0.000106739746,0.0031274217],"study_design_scores_gemma":[0.000038238075,0.00057137996,0.5370535,0.000028045108,0.000095490366,0.0013564199,0.00061144587,0.002746583,0.45071417,0.00020652165,0.0065530003,0.000025143043],"about_ca_topic_score_codex":0.00088644825,"about_ca_topic_score_gemma":0.0014818304,"teacher_disagreement_score":0.00088644825,"about_ca_system_score_codex":0.00015077025,"about_ca_system_score_gemma":0.00015710996,"threshold_uncertainty_score":0.002717197},"labels":[],"label_agreement":null},{"id":"W1529356222","doi":"10.1002/path.4536","title":"Efficient molecular subtype classification of high‐grade serous ovarian cancer","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research and Materiel Command; Cancer Council Western Australia; Cancer Council Tasmania; Cancer Council Victoria; Cancer Council South Australia; Peter MacCallum Foundation; Ovarian Cancer Australia; Cancer Council NSW; National Health and Medical Research Council; U.S. Department of Defense","keywords":"Serous fluid; Ovarian cancer; Biology; Serous ovarian cancer; Microarray; Computational biology; Gene expression profiling; Gene; Pathology; Cancer research; Bioinformatics; Cancer; Gene expression; Medicine; Genetics","score_opus":0.02147748832479243,"score_gpt":0.27876740137423567,"score_spread":0.25728991304944326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1529356222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9803202,0.0012800491,0.01584713,0.0001436826,0.00002234002,0.00008925762,0.0008395504,0.00013136383,0.0013264001],"genre_scores_gemma":[0.9694242,0.0004379037,0.027555685,0.000072583935,0.000017251083,0.0000559374,0.0018246591,0.00002139078,0.0005904159],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99952674,0.00012429229,0.00004771092,0.000068673464,0.00017127964,0.000061402054],"domain_scores_gemma":[0.99959844,0.000109261106,0.00008896251,0.000058320504,0.000114871385,0.000030148212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083812716,0.00017313425,0.00026902324,0.00083846826,0.000230472,0.00068102445,0.00027006533,0.0002743024,0.00040422205],"category_scores_gemma":[0.0012849713,0.00009639722,0.00020002262,0.00042349315,0.00011113769,0.00021692511,0.0002807102,0.00027843867,0.00031540595],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007492708,0.000087762644,0.3470938,0.00018771442,0.000093332725,0.0001401336,0.0001805963,0.0026201324,0.51677805,0.0007815004,0.0013845287,0.12990311],"study_design_scores_gemma":[0.000052391748,0.0004670525,0.7087368,0.00007816449,0.000193333,0.0011221267,0.00061568327,0.054106243,0.22294211,0.001306823,0.01033722,0.00004214025],"about_ca_topic_score_codex":0.001518949,"about_ca_topic_score_gemma":0.0031885991,"teacher_disagreement_score":0.001518949,"about_ca_system_score_codex":0.00030210894,"about_ca_system_score_gemma":0.00045377534,"threshold_uncertainty_score":0.0044324994},"labels":[],"label_agreement":null},{"id":"W1544109218","doi":"10.1002/path.4113","title":"Oxidative stress and myocardial injury in the diabetic heart","year":2012,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cardiac Ischemia and Reperfusion","field":"Medicine","cited_by":231,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Oxidative stress; Mitochondrion; Reactive nitrogen species; Nitric oxide; Reactive oxygen species; Antioxidant; Homeostasis; Reperfusion injury; Intracellular; Nitric oxide synthase; Cell biology; Oxidative phosphorylation; Internal medicine; Chemistry; Ischemia; Biology; Medicine; Biochemistry","score_opus":0.02862826147046431,"score_gpt":0.3333748035430483,"score_spread":0.304746542072584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1544109218","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009868682,0.99896324,0.000076045384,0.0001635356,0.00015712179,0.0000025806862,0.000005990572,0.000004695489,0.0005280124],"genre_scores_gemma":[0.0006300768,0.99851173,0.00011447674,0.00008660059,0.00017357232,0.0000033873469,0.000011665474,8.1378465e-7,0.00046778767],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998659,0.000020295378,0.000022700242,0.00002450968,0.000053815802,0.000012806459],"domain_scores_gemma":[0.99980336,0.000058738748,0.00004081072,0.0000083551295,0.000057944566,0.000030933905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044586993,0.0009673182,0.001363787,0.0027544377,0.00038636258,0.0009817012,0.000879251,0.0011569357,0.0026913495],"category_scores_gemma":[0.00046766025,0.000263398,0.00031992595,0.0027703478,0.0007542695,0.0015727415,0.0007282725,0.0016179603,0.0023972383],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080486825,0.00009996383,0.00025556592,0.0117059965,0.00005679608,0.00043156522,0.00008451559,0.00030201377,0.0021309198,0.0031986854,0.029781904,0.9518716],"study_design_scores_gemma":[0.000023590183,0.00013366266,0.0023553835,0.0040562474,0.000084736515,0.00499414,0.00014614027,0.00011286976,0.00065820816,0.0054710694,0.98193514,0.000028926901],"about_ca_topic_score_codex":0.00094472256,"about_ca_topic_score_gemma":0.0015731938,"teacher_disagreement_score":0.0027544377,"about_ca_system_score_codex":0.00056104007,"about_ca_system_score_gemma":0.00077733933,"threshold_uncertainty_score":0.00900352},"labels":[],"label_agreement":null},{"id":"W1549032591","doi":"10.1002/path.4314","title":"The small heat‐shock protein <i>α</i><scp>B</scp>‐crystallin is essential for the nuclear localization of Smad4: impact on pulmonary fibrosis","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Heat shock protein; Shock (circulatory); Chemistry; Hsp70; Cell biology; Nuclear protein; Medicine; Biochemistry; Biology; Internal medicine; Transcription factor","score_opus":0.010105002160398441,"score_gpt":0.2505909483939127,"score_spread":0.24048594623351427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1549032591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937988,0.0016530346,0.0024605326,0.00029296632,0.00005720822,0.000020854466,0.0005831995,0.00014113428,0.0009922852],"genre_scores_gemma":[0.99610835,0.0005330822,0.0010790484,0.00006330308,0.000011212064,0.000017580795,0.0005573233,0.00004873667,0.0015813725],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987996,0.000029991557,0.000014903458,0.000021975717,0.000029946656,0.000023206687],"domain_scores_gemma":[0.99980825,0.000022106497,0.00007857918,0.000017941082,0.000010539648,0.00006270252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000979774,0.000322277,0.00026422224,0.00018002404,0.00024392935,0.0002629268,0.00018062342,0.00029103275,0.0015875243],"category_scores_gemma":[0.00010786108,0.00013373347,0.00030365816,0.00015196997,0.0003614186,0.0001222388,0.00018658569,0.00044703556,0.00048621904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022005793,0.000018495468,0.00011493044,0.000028462418,0.000005413365,0.000062721956,0.000005337246,0.000059514517,0.9988456,0.000060923132,0.000042579984,0.00053601805],"study_design_scores_gemma":[0.000043404023,0.00016351025,0.008993755,0.000012047645,0.000022574195,0.0005306753,0.000028571232,0.001081966,0.9857712,0.00006754995,0.0032768438,0.0000080479795],"about_ca_topic_score_codex":0.0010380455,"about_ca_topic_score_gemma":0.0009838828,"teacher_disagreement_score":0.0015875243,"about_ca_system_score_codex":0.000393394,"about_ca_system_score_gemma":0.00026632193,"threshold_uncertainty_score":0.005310774},"labels":[],"label_agreement":null},{"id":"W1550376883","doi":"10.1002/path.4230","title":"Distinct evolutionary trajectories of primary high‐grade serous ovarian cancers revealed through spatial mutational profiling","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":434,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Biology; Serous fluid; Ovarian cancer; Copy number analysis; Amplicon; Fallopian tube; Copy-number variation; Somatic evolution in cancer; Exome; Exome sequencing; Germline mutation; Genetics; Mutation; Gene; Cancer; Genome; Polymerase chain reaction","score_opus":0.010669276049083408,"score_gpt":0.23714378353868693,"score_spread":0.22647450748960352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1550376883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900526,0.00015882993,0.0004989084,0.000008094422,4.2564008e-7,0.000004255299,0.0000951537,0.0000073591336,0.00022170004],"genre_scores_gemma":[0.99911696,0.00009530902,0.00044361016,0.0000073191495,8.8035114e-7,0.0000069117386,0.00018333788,0.0000045354104,0.00014116704],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989355,0.00001659786,0.0000060711495,0.000032103362,0.000028145196,0.000023574212],"domain_scores_gemma":[0.99981886,0.00004941792,0.000057057718,0.000019412486,0.0000316903,0.000023564766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013070223,0.00009221927,0.00014370398,0.0005935302,0.00015802342,0.00032176432,0.00010781007,0.00013882676,0.00046345254],"category_scores_gemma":[0.0004971545,0.00010878794,0.000121676865,0.00039839704,0.00019287743,0.00012300772,0.0002858712,0.0001481444,0.0001262336],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005318464,0.000030604333,0.54436,0.000067441775,0.00006314384,0.0010838363,0.00078977883,0.0015627795,0.43107972,0.00026693539,0.0001017652,0.020062182],"study_design_scores_gemma":[0.0000035472974,0.000103215716,0.97009474,0.000005287475,0.00002129873,0.0023043423,0.00034027194,0.00257075,0.023665749,0.00014861759,0.0007347214,0.000007559409],"about_ca_topic_score_codex":0.0011288659,"about_ca_topic_score_gemma":0.0022740588,"teacher_disagreement_score":0.0011288659,"about_ca_system_score_codex":0.00020451276,"about_ca_system_score_gemma":0.00008916762,"threshold_uncertainty_score":0.0022445917},"labels":[],"label_agreement":null},{"id":"W1555404884","doi":"10.1002/path.4123","title":"Regulation of the immune and inflammatory responses by the 'atypical' chemokine receptor <scp>D6</scp>","year":2012,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Chemokine receptors and signaling","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"CCR1; Chemokine receptor; CCL13; Chemokine; CCR10; CXC chemokine receptors; Biology; CCL21; CCL18; Immunology; CCL7; C-C chemokine receptor type 6; CC chemokine receptors; Inflammation; Cell biology","score_opus":0.030512614023284274,"score_gpt":0.2968421857955195,"score_spread":0.26632957177223526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1555404884","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00030653758,0.99751854,0.00023602713,0.0002681357,0.00019881221,0.000005044776,0.000018672288,0.00000919358,0.0014390913],"genre_scores_gemma":[0.0014547056,0.9963923,0.0004199048,0.00017699672,0.00021832241,0.000007803557,0.000034781962,0.0000015697229,0.0012935564],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99988806,0.000017639408,0.000017324219,0.000018672163,0.00004701914,0.000011314594],"domain_scores_gemma":[0.99984777,0.00005013913,0.00002480221,0.0000066956804,0.00004678609,0.000023755325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037924806,0.00055426935,0.0006803235,0.0012603741,0.00017890766,0.00055354816,0.0004814356,0.00064605364,0.0024321827],"category_scores_gemma":[0.00036482475,0.00015401494,0.00022795395,0.0010409387,0.0003718646,0.0008618667,0.00041426756,0.00097544014,0.0030379896],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006882217,0.00004529232,0.00019800897,0.0048233247,0.000026787791,0.00019253578,0.000033697288,0.00019696465,0.0072927615,0.0037615732,0.017405841,0.9659544],"study_design_scores_gemma":[0.000014065809,0.00008327801,0.0009990132,0.0006804136,0.000027077673,0.0019858202,0.00003752077,0.000061328974,0.0015652737,0.001213128,0.9933189,0.000014194743],"about_ca_topic_score_codex":0.00040593836,"about_ca_topic_score_gemma":0.0006823663,"teacher_disagreement_score":0.0024321827,"about_ca_system_score_codex":0.0003500184,"about_ca_system_score_gemma":0.00061503414,"threshold_uncertainty_score":0.008136511},"labels":[],"label_agreement":null},{"id":"W1556447710","doi":"10.1002/path.4135","title":"Cancer‐associated somatic <i><scp>DICER1</scp></i> hotspot mutations cause defective <scp>miRNA</scp> processing and reverse‐strand expression bias to predominantly mature 3p strands through loss of 5p strand cleavage","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency; University of British Columbia","funders":"BC Cancer Agency; Canadian Institutes of Health Research","keywords":"Ribonuclease III; microRNA; Biology; RNase H; Somatic cell; Mutant; Molecular biology; RNase P; Gene; Messenger RNA; Genetics; RNA; RNA interference","score_opus":0.018065128394613387,"score_gpt":0.28249735570858214,"score_spread":0.26443222731396876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1556447710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956191,0.00039536363,0.0023789986,0.00003903446,0.000013981544,0.000028393326,0.00052722864,0.00013196174,0.0008659398],"genre_scores_gemma":[0.9964187,0.00029575435,0.0015754675,0.000042766464,0.000004860722,0.000014237763,0.0005654266,0.00003114907,0.0010515965],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998977,0.000009232485,0.000014430656,0.000030303116,0.000033189513,0.00001516877],"domain_scores_gemma":[0.9997919,0.000031425327,0.000094490795,0.000030511937,0.000017992448,0.000033687364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008283985,0.00040134235,0.00024502116,0.00027870268,0.00013703466,0.0002092024,0.00016408451,0.0002701083,0.0010011671],"category_scores_gemma":[0.00014351144,0.00015084131,0.00026290823,0.00019144664,0.0002685937,0.0000974437,0.00018472537,0.00030658225,0.00033465197],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039795963,0.000007827439,0.0014885246,0.000027541684,0.000008421443,0.00032954264,0.00001127435,0.00007999024,0.9966814,0.000055426437,0.0000398102,0.0012304648],"study_design_scores_gemma":[0.000007487985,0.00011219747,0.023033237,0.0000030968258,0.000026229973,0.00507977,0.0000189068,0.00057779683,0.9692029,0.000059501886,0.0018711407,0.000007710201],"about_ca_topic_score_codex":0.0005298798,"about_ca_topic_score_gemma":0.00075250544,"teacher_disagreement_score":0.0010011671,"about_ca_system_score_codex":0.00021168646,"about_ca_system_score_gemma":0.00013765068,"threshold_uncertainty_score":0.0033493042},"labels":[],"label_agreement":null},{"id":"W1564258193","doi":"10.1002/path.4343","title":"Tubers from patients with tuberous sclerosis complex are characterized by changes in microtubule biology through <scp>ROCK2</scp> signalling","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Tuberous Sclerosis Complex Research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Generalitat de Catalunya; European Commission","keywords":"TSC2; Tuberous sclerosis; ROCK2; Biology; Microtubule; Cell biology; TSC1; Cortex (anatomy); RHOA; Kinase; Rho-associated protein kinase; Signal transduction; PI3K/AKT/mTOR pathway; Neuroscience; Pathology; Medicine","score_opus":0.04593728950103022,"score_gpt":0.27005319621188945,"score_spread":0.22411590671085924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1564258193","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977494,0.00035569243,0.0005444025,0.000025847048,0.0000050561703,0.000015644335,0.0006344581,0.000047719193,0.00062174565],"genre_scores_gemma":[0.9975432,0.00030246627,0.00057330914,0.00002259056,0.000005602504,0.000016107973,0.0011714131,0.000014365543,0.00035090584],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998764,0.000008820304,0.000020129048,0.000039624745,0.000033419168,0.000021595439],"domain_scores_gemma":[0.9998567,0.00001693256,0.00005379735,0.000017916662,0.000023262339,0.00003141876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007193479,0.00033693755,0.00025850034,0.0007372947,0.0003978166,0.0003447,0.00008802372,0.00015463312,0.0012292706],"category_scores_gemma":[0.00024725974,0.00015910993,0.00020581618,0.00047031304,0.00023939589,0.00009670048,0.00034165333,0.00022841083,0.00032686585],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004308687,0.000031380147,0.05485662,0.00014502105,0.00009294067,0.0047086636,0.00031792076,0.0001221328,0.9291747,0.00007439119,0.0003414606,0.0097038755],"study_design_scores_gemma":[0.000033406825,0.00025417545,0.82165325,0.000024643316,0.0001170563,0.059531223,0.00060428004,0.000470988,0.11320244,0.00020999041,0.0038750584,0.000023530789],"about_ca_topic_score_codex":0.0011984297,"about_ca_topic_score_gemma":0.0027407426,"teacher_disagreement_score":0.0012292706,"about_ca_system_score_codex":0.00013800633,"about_ca_system_score_gemma":0.00012518809,"threshold_uncertainty_score":0.0041122437},"labels":[],"label_agreement":null},{"id":"W1565037297","doi":"10.1002/path.4202","title":"Dasatinib inhibits mammary tumour development in a genetically engineered mouse model","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"HER2/EGFR in Cancer Research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Cancer Research UK","keywords":"Dasatinib; Proto-oncogene tyrosine-protein kinase Src; Cancer research; Breast cancer; Cancer; ErbB; PTEN; Biology; Kinase; Medicine; Cre recombinase; Internal medicine; Genetically modified mouse; Tyrosine kinase; Transgene; Receptor; Signal transduction; PI3K/AKT/mTOR pathway; Gene; Cell biology; Genetics","score_opus":0.04213517269409412,"score_gpt":0.3176747396598824,"score_spread":0.2755395669657883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1565037297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9783222,0.0027514691,0.009226724,0.00073848077,0.00024688354,0.0004453734,0.0024761346,0.0006393432,0.005153392],"genre_scores_gemma":[0.9672637,0.0028806946,0.007891207,0.00021196522,0.000045134046,0.00043022053,0.0022268882,0.00010410201,0.018946145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995023,0.000071201175,0.000054401204,0.00011218163,0.00016041576,0.00009952399],"domain_scores_gemma":[0.9997322,0.00004572665,0.00008913875,0.000042210053,0.000020027197,0.00007072697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036640244,0.0007651031,0.00065265043,0.00081420946,0.00025174805,0.0004987595,0.0006341095,0.00093119714,0.002134964],"category_scores_gemma":[0.00017261617,0.00039885537,0.00070312025,0.0003733761,0.00039939658,0.00041938917,0.00028425115,0.0020055643,0.0008939548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039065848,0.00021911666,0.0001360224,0.000051368228,0.000013747657,0.00012902965,0.00002640294,0.00013471452,0.9969652,0.00027591374,0.00012395615,0.0015337248],"study_design_scores_gemma":[0.00015739376,0.0026997663,0.0019777867,0.00001549445,0.000036013105,0.0008530262,0.000049022256,0.0018404064,0.98661196,0.00013053828,0.005615897,0.000012703957],"about_ca_topic_score_codex":0.0006810913,"about_ca_topic_score_gemma":0.0015395912,"teacher_disagreement_score":0.002134964,"about_ca_system_score_codex":0.0006560145,"about_ca_system_score_gemma":0.00041106303,"threshold_uncertainty_score":0.007142186},"labels":[],"label_agreement":null},{"id":"W1569841065","doi":"10.1002/path.4585","title":"In Brief: Picturing the complex world of chromatin remodelling families","year":2015,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital; McGill University Health Centre","funders":"Canadian Cancer Society Research Institute; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Chromatin; Chromatin remodeling; Sex chromatin; Biology; Evolutionary biology; Genetics; DNA","score_opus":0.07478639435216956,"score_gpt":0.3519466941512499,"score_spread":0.27716029979908036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1569841065","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011388138,0.99521613,0.00040141106,0.0010172393,0.0015380521,0.000005272093,0.00004278583,0.000017079838,0.0016482874],"genre_scores_gemma":[0.000694302,0.9939825,0.00063634256,0.0010413557,0.0012661555,0.00000900187,0.000091026115,0.0000055985483,0.0022737079],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99983144,0.000033085526,0.000031248484,0.00003480811,0.00005396592,0.00001536649],"domain_scores_gemma":[0.9996412,0.00017076393,0.000046538902,0.000013023975,0.000088334345,0.00004012252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005103078,0.00080611167,0.0008904321,0.0023360236,0.0004004622,0.0011080761,0.00072554866,0.0011644396,0.0047980943],"category_scores_gemma":[0.000928322,0.00030287058,0.00033212328,0.0022327546,0.00059714436,0.0024071843,0.00081539236,0.0025209505,0.004374085],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009171168,0.00003753867,0.00022097847,0.016694773,0.00006934139,0.00049322366,0.00020927886,0.00041425365,0.00454106,0.010968734,0.15819417,0.80806494],"study_design_scores_gemma":[0.0000029360874,0.000023006032,0.00023650924,0.0014350271,0.000019809777,0.0011782005,0.000037576723,0.000027543992,0.0003173042,0.0015368683,0.995174,0.000011166798],"about_ca_topic_score_codex":0.000889829,"about_ca_topic_score_gemma":0.0014319126,"teacher_disagreement_score":0.0047980943,"about_ca_system_score_codex":0.0006296766,"about_ca_system_score_gemma":0.0008296557,"threshold_uncertainty_score":0.016051173},"labels":[],"label_agreement":null},{"id":"W1578459300","doi":"10.1002/path.4246","title":"The matricellular protein <scp>CCN3</scp> regulates <scp>NOTCH1</scp> signalling in chronic myeloid leukaemia","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Connective Tissue Growth Factor Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"HES1; Cancer research; K562 cells; Signalling; Haematopoiesis; Myeloid; Gene silencing; breakpoint cluster region; Imatinib; Cell biology; Notch signaling pathway; Biology; Chemistry; Myeloid leukemia; Receptor; Immunology; Leukemia; Signal transduction; Stem cell; Gene; Genetics","score_opus":0.0124191623754221,"score_gpt":0.2520000533082528,"score_spread":0.23958089093283072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1578459300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943546,0.0025070158,0.001342931,0.00016994071,0.000015595431,0.000021319724,0.0004051377,0.000049663293,0.0011337488],"genre_scores_gemma":[0.9975955,0.00059495564,0.0005396926,0.00003731981,0.000003930644,0.000015587686,0.00027956138,0.0000058834244,0.0009275512],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998927,0.000016873155,0.000008216319,0.000015941001,0.000042835545,0.000023488916],"domain_scores_gemma":[0.99993837,0.000005464068,0.000017257249,0.000005425969,0.000007897314,0.00002559738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000101443446,0.00020305839,0.00016002527,0.00019406914,0.00023566752,0.00021925132,0.00010991922,0.00021977855,0.0008730191],"category_scores_gemma":[0.00007004976,0.000080909675,0.00017574827,0.0001660068,0.00026772494,0.00013702028,0.00019562172,0.00041093962,0.00026242915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007669806,0.0000074114228,0.0003689072,0.000021946675,0.0000029959851,0.000061497114,0.000009832886,0.00004337517,0.99851674,0.00007368556,0.00005510878,0.0007618183],"study_design_scores_gemma":[0.00003126836,0.00014239375,0.05824928,0.00000845233,0.000021563084,0.0011681403,0.000060309634,0.0019254767,0.93258804,0.00015939405,0.0056361607,0.000009516614],"about_ca_topic_score_codex":0.0014394671,"about_ca_topic_score_gemma":0.001970178,"teacher_disagreement_score":0.0014394671,"about_ca_system_score_codex":0.0004774743,"about_ca_system_score_gemma":0.00024140604,"threshold_uncertainty_score":0.0034643412},"labels":[],"label_agreement":null},{"id":"W1580984542","doi":"10.1002/path.4344","title":"Targeted next‐generation sequencing of cancer genes dissects the molecular profiles of intraductal papillary neoplasms of the pancreas","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":344,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Hospital Foundation","funders":"National Center for Advancing Translational Sciences; Università degli Studi di Verona; Rolfe Pancreatic Cancer Foundation; National Institutes of Health; National Cancer Institute; Associazione Italiana per la Ricerca sul Cancro","keywords":"GNAS complex locus; KRAS; Intraductal papillary mucinous neoplasm; Dysplasia; Cancer; Pathology; Gene mutation; Pancreas; Cancer research; Medicine; Carcinoma; Mutation; Biology; Gene; Internal medicine; Colorectal cancer; Genetics","score_opus":0.043622543204610446,"score_gpt":0.32009000995084286,"score_spread":0.2764674667462324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1580984542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941713,0.000448254,0.0043878155,0.000022331134,0.0000041404323,0.000024397063,0.00054440455,0.000033646345,0.0003637732],"genre_scores_gemma":[0.9881606,0.00060666126,0.009382726,0.000057368197,0.0000054323064,0.00005540879,0.0012145085,0.00001881708,0.0004984718],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987733,0.000018215209,0.000012248034,0.000038023943,0.000035139514,0.000018978595],"domain_scores_gemma":[0.9998449,0.000052975807,0.000036976657,0.000020752746,0.000029105742,0.000015285808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021282627,0.00019825867,0.00022143265,0.00071770616,0.00014872682,0.000301576,0.00012499247,0.0002388567,0.0005243324],"category_scores_gemma":[0.0004765645,0.00014951984,0.00017830751,0.00046146638,0.0001630545,0.00011187029,0.00015410542,0.00018862904,0.00017520331],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021310551,0.000031319894,0.058995526,0.00006366449,0.00004699369,0.00050536665,0.0001181251,0.0003678402,0.92534715,0.00008027502,0.00010434132,0.014126202],"study_design_scores_gemma":[0.000034580513,0.00044089486,0.6791296,0.000021987003,0.00020949924,0.004726481,0.0002401774,0.0066495095,0.3045138,0.0003684907,0.003647613,0.000017393946],"about_ca_topic_score_codex":0.00044596175,"about_ca_topic_score_gemma":0.00074906764,"teacher_disagreement_score":0.00071770616,"about_ca_system_score_codex":0.0001374225,"about_ca_system_score_gemma":0.00012110574,"threshold_uncertainty_score":0.0017541051},"labels":[],"label_agreement":null},{"id":"W1582066855","doi":"10.1002/path.4555","title":"CXCR2 inhibition suppresses acute and chronic pancreatic inflammation","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatitis Pathology and Treatment","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Beatson Institute for Cancer Research; Cancer Research UK; Wellcome Trust; Cancer Research Institute","keywords":"Pancreatitis; Acute pancreatitis; CXC chemokine receptors; Medicine; Inflammation; Chemokine; Pancreatic injury; Pancreas; Immunology; Pathogenesis; Chemokine receptor; Cancer research; Gastroenterology; Internal medicine","score_opus":0.01943289307508973,"score_gpt":0.28331845468236555,"score_spread":0.26388556160727583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1582066855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98734355,0.006380884,0.0013719931,0.00041943046,0.00012530015,0.00007358967,0.00036026354,0.0002852048,0.0036397926],"genre_scores_gemma":[0.99117774,0.003059918,0.0011832577,0.00020903815,0.000046990073,0.00008597533,0.00062763796,0.000023819588,0.0035855733],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985313,0.00003291491,0.000011185604,0.000014920165,0.00003076008,0.000057060923],"domain_scores_gemma":[0.9999232,0.000009144461,0.000019302264,0.000008301713,0.0000073132524,0.00003276435],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022311047,0.00035187593,0.00037103635,0.00023611376,0.000130226,0.00028260093,0.00021104558,0.00026970328,0.0018888643],"category_scores_gemma":[0.00014889598,0.00011684735,0.00025144845,0.00014297124,0.00024335069,0.0002319804,0.00016488455,0.0010740827,0.0002921765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004250481,0.0018249571,0.00073388126,0.0002662625,0.000040509625,0.0001344619,0.0000414035,0.0005267566,0.9615703,0.0008895675,0.0015732548,0.028148104],"study_design_scores_gemma":[0.0020306897,0.024687186,0.019540792,0.00008977442,0.00015648175,0.001253802,0.00014168936,0.0070046373,0.9258745,0.0005434026,0.018646479,0.000030589625],"about_ca_topic_score_codex":0.00036410082,"about_ca_topic_score_gemma":0.0007392889,"teacher_disagreement_score":0.0018888643,"about_ca_system_score_codex":0.00016756548,"about_ca_system_score_gemma":0.0003929077,"threshold_uncertainty_score":0.006318927},"labels":[],"label_agreement":null},{"id":"W1584527630","doi":"10.1002/path.4404","title":"Up‐regulation of the interferon‐related genes in <i><scp>BRCA2</scp></i> knockout epithelial cells","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; National Institute for Health and Care Research; Canadian Cancer Society; Cancer Research UK; Wellcome Trust","keywords":"Biology; BRCA2 Protein; Interferon; DNA damage; Cancer research; Knockout mouse; Gene; IRF1; Homologous recombination; RAD51; Molecular biology; Gene expression; Mutation; Genetics; DNA; Germline mutation","score_opus":0.005918145138850707,"score_gpt":0.21342225844603632,"score_spread":0.20750411330718563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1584527630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98932797,0.0009619678,0.003806179,0.00015820513,0.00006035597,0.000033325185,0.0038265241,0.0002471512,0.0015783313],"genre_scores_gemma":[0.9851521,0.0006608376,0.0032859514,0.00013693611,0.000015709322,0.0000733646,0.0034136048,0.000100187855,0.007161158],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997967,0.000019567196,0.00002634315,0.000057970992,0.00005827825,0.000041226904],"domain_scores_gemma":[0.999778,0.00003290001,0.00006631695,0.000034426404,0.00002285479,0.00006553652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010454847,0.00034918118,0.0002984489,0.0002831009,0.00016011043,0.00033814105,0.00013290158,0.00030566438,0.0020541316],"category_scores_gemma":[0.00008954783,0.00018320195,0.0003104527,0.00026458397,0.00027671954,0.00013906152,0.00015094907,0.00069951813,0.00071659393],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029285531,0.000006566414,0.00010762798,0.000012491156,0.0000022034833,0.000034246517,0.000007795363,0.000016660902,0.9995639,0.000019232846,0.000025540763,0.00017452613],"study_design_scores_gemma":[0.000008355981,0.000076480035,0.01097121,0.000006242324,0.000012583533,0.0003952307,0.00004349211,0.000634819,0.9857099,0.000027340497,0.0021090896,0.000005343673],"about_ca_topic_score_codex":0.0011407498,"about_ca_topic_score_gemma":0.0011860535,"teacher_disagreement_score":0.0020541316,"about_ca_system_score_codex":0.0002575257,"about_ca_system_score_gemma":0.00017463573,"threshold_uncertainty_score":0.00687176},"labels":[],"label_agreement":null},{"id":"W1591654527","doi":"10.1002/path.4569","title":"Recurrent <i><scp>DICER1</scp></i> hotspot mutations in endometrial tumours and their impact on <scp>microRNA</scp> biogenesis","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Cancer Agency","funders":"National Cancer Institute; U.S. Public Health Service","keywords":"microRNA; Biogenesis; Biology; Cancer research; Genetics; Gene; Cell biology","score_opus":0.020412812882428508,"score_gpt":0.2789704674336853,"score_spread":0.2585576545512568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1591654527","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786013,0.0008020458,0.0007734701,0.000019037827,0.0000034217517,0.000009068422,0.00013937427,0.00001793239,0.00037546203],"genre_scores_gemma":[0.99841285,0.000275123,0.0010300615,0.000015544321,0.0000024177803,0.0000035756061,0.000108584405,0.000009900172,0.00014201556],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998023,0.000028869857,0.00003030219,0.000053224518,0.00005645494,0.000028815999],"domain_scores_gemma":[0.9997445,0.000056113957,0.00011273858,0.000028349326,0.00002296184,0.000035258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021951403,0.00020280665,0.0001855464,0.0004563255,0.00012640284,0.0002679236,0.00015168868,0.0002495697,0.0005633732],"category_scores_gemma":[0.00045541182,0.00016376752,0.0002737916,0.00026576364,0.00025944578,0.00010713451,0.00020664264,0.0001715246,0.00016355919],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048741457,0.00002056906,0.09340044,0.00017927645,0.000100434816,0.006572919,0.00019136349,0.00047629484,0.88320565,0.00016636765,0.00010839892,0.015090879],"study_design_scores_gemma":[0.0000359553,0.00046241045,0.41685498,0.000040858296,0.00026835536,0.06086759,0.00025949514,0.002901507,0.51365083,0.0003531541,0.0042724493,0.000032461387],"about_ca_topic_score_codex":0.00042116398,"about_ca_topic_score_gemma":0.00067730685,"teacher_disagreement_score":0.0005633732,"about_ca_system_score_codex":0.00018356898,"about_ca_system_score_gemma":0.00010933141,"threshold_uncertainty_score":0.0018846989},"labels":[],"label_agreement":null},{"id":"W1594350035","doi":"10.1002/path.4516","title":"Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":188,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency; University of British Columbia","funders":"Canadian Cancer Society Research Institute; BC Cancer Foundation; VGH and UBC Hospital Foundation","keywords":"Endometriosis; Malignant transformation; ARID1A; Cancer research; Carcinoma; Somatic cell; Mutation; Clear cell carcinoma; Biology; Cancer; Pathology; Medicine; Gene; Genetics","score_opus":0.040606367406022206,"score_gpt":0.30295750629312834,"score_spread":0.26235113888710615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1594350035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977793,0.000950556,0.0006816528,0.000025947233,0.000002273874,0.000013478139,0.000050314466,0.000012016182,0.00048449423],"genre_scores_gemma":[0.9988575,0.00020330647,0.0007492552,0.000011362505,0.0000039501538,0.0000029332914,0.000055587305,0.0000022376744,0.00011398467],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997067,0.00004075878,0.000032305266,0.00006291435,0.00009750788,0.000059884733],"domain_scores_gemma":[0.99907947,0.00018068866,0.00045540635,0.00009101129,0.00007432099,0.00011908672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034587388,0.00017150301,0.00022514808,0.0009820837,0.00032784237,0.0003563917,0.00015403886,0.00023459994,0.00133188],"category_scores_gemma":[0.0014393218,0.00019198131,0.00013827663,0.00047445495,0.00033167616,0.00023718369,0.0004769949,0.00022762732,0.00017838455],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033184834,0.000039814073,0.7392918,0.0001389474,0.000081100734,0.0077639422,0.00034888225,0.0002229699,0.22083023,0.00050906173,0.00012973511,0.030311622],"study_design_scores_gemma":[0.000020133211,0.00020373169,0.9138894,0.00002581177,0.00006908049,0.059776276,0.00036635873,0.0005698682,0.022250194,0.0005432824,0.0022682517,0.00001764122],"about_ca_topic_score_codex":0.0008107743,"about_ca_topic_score_gemma":0.0018378535,"teacher_disagreement_score":0.00133188,"about_ca_system_score_codex":0.00019809842,"about_ca_system_score_gemma":0.00019614711,"threshold_uncertainty_score":0.004455507},"labels":[],"label_agreement":null},{"id":"W1598545767","doi":"10.1002/path.4240","title":"Identification of a recurrent transforming <i><scp>UBR5–ZNF423</scp></i> fusion gene in <scp>EBV</scp>‐associated nasopharyngeal carcinoma","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University Health Network; Ontario Institute for Cancer Research","funders":"Chinese University of Hong Kong; Pathological Society of Great Britain and Ireland","keywords":"Nasopharyngeal carcinoma; Biology; Fusion protein; Ubiquitin ligase; Fusion gene; Cell fusion; Cancer research; Cell growth; Molecular biology; Cell culture; Gene; Genetics; Ubiquitin","score_opus":0.014025897953121872,"score_gpt":0.2563373170080389,"score_spread":0.24231141905491704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1598545767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986928,0.00015802523,0.0006967834,0.000016284717,0.000005035757,0.00001368909,0.00017083246,0.00002546983,0.0002211198],"genre_scores_gemma":[0.99851733,0.00012739819,0.0005767574,0.000018597211,0.0000027430808,0.000009148069,0.00037196005,0.0000064926276,0.0003695999],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999082,0.0000046755526,0.0000066550547,0.000024454774,0.000037427137,0.000018575438],"domain_scores_gemma":[0.999928,0.000009020986,0.00002295839,0.000010584447,0.000010328359,0.000018975574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000701057,0.00018088368,0.00025147386,0.0001743888,0.00018237477,0.0002330345,0.00012998906,0.00026578925,0.0005587597],"category_scores_gemma":[0.0001552948,0.00011351601,0.00029891872,0.00020746807,0.00018754422,0.00006460724,0.00013535639,0.00026893246,0.00023515195],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057499296,0.000008370714,0.0023729808,0.000021082884,0.000007999894,0.00070170104,0.000038703616,0.000047071913,0.99540234,0.000030358686,0.000031493822,0.0012803597],"study_design_scores_gemma":[0.000032296535,0.0003609162,0.13688482,0.00001026255,0.00012768827,0.016496036,0.00022710982,0.0031367007,0.8380378,0.00009205991,0.0045742346,0.000020181456],"about_ca_topic_score_codex":0.0012167552,"about_ca_topic_score_gemma":0.0013004699,"teacher_disagreement_score":0.0012167552,"about_ca_system_score_codex":0.00024782028,"about_ca_system_score_gemma":0.00017671414,"threshold_uncertainty_score":0.0024193525},"labels":[],"label_agreement":null},{"id":"W1715086455","doi":"10.1002/path.4636","title":"The genomic landscape of epithelioid sarcoma cell lines and tumours","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; BC Cancer Agency; University of Toronto; Centre for Advancing Health Outcomes","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre","keywords":"Epithelioid sarcoma; Epithelioid cell; Sarcoma; Pathology; Biology; Medicine; Immunohistochemistry","score_opus":0.012141872867615299,"score_gpt":0.2460708030591739,"score_spread":0.23392893019155858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1715086455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99372053,0.0004519933,0.0024331016,0.000035480676,0.0000047885073,0.000026124862,0.001984084,0.000047984893,0.0012959394],"genre_scores_gemma":[0.99035126,0.00036894582,0.002144829,0.00005909935,0.0000038785643,0.000055298246,0.005845025,0.00003959929,0.001132054],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997186,0.000024962777,0.000023737242,0.000108914675,0.00008218771,0.0000415642],"domain_scores_gemma":[0.99966407,0.00009807719,0.00005518857,0.00006486953,0.000072294475,0.00004547002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001725273,0.00014058784,0.00024554032,0.0007020757,0.00024848914,0.0004095337,0.0001404508,0.0001923597,0.0015305541],"category_scores_gemma":[0.00054785906,0.00013042722,0.00014194417,0.00049381464,0.00022079218,0.00010529745,0.00028919423,0.00021331954,0.00041243725],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002584186,0.000022952343,0.05435519,0.00007034914,0.000041216266,0.000591133,0.00034163834,0.00025961045,0.9364169,0.00017789837,0.00016379985,0.0073009073],"study_design_scores_gemma":[0.00002514412,0.00035202364,0.7504673,0.000019709849,0.00014136064,0.006668864,0.001013537,0.0024207998,0.22529636,0.00050870684,0.013062126,0.000024164494],"about_ca_topic_score_codex":0.001022853,"about_ca_topic_score_gemma":0.0020885456,"teacher_disagreement_score":0.0015305541,"about_ca_system_score_codex":0.00021153816,"about_ca_system_score_gemma":0.00014683396,"threshold_uncertainty_score":0.005120218},"labels":[],"label_agreement":null},{"id":"W1752362818","doi":"10.1002/path.4593","title":"Vitamin D attenuates proteinuria by inhibition of heparanase expression in the podocyte","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Coagulation, Bradykinin, Polyphosphates, and Angioedema","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Diabetes Fonds; Nierstichting; McGill University","keywords":"Heparanase; Podocyte; Proteinuria; Internal medicine; Endocrinology; Glomerular basement membrane; Chemistry; Heparan sulfate; Medicine; Kidney; Heparin","score_opus":0.027107606437323264,"score_gpt":0.28686535777158184,"score_spread":0.2597577513342586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1752362818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896318,0.006743744,0.0020130835,0.00021083104,0.00005419094,0.00004649479,0.00019976108,0.00013678827,0.0009633582],"genre_scores_gemma":[0.99242485,0.0030748472,0.0016373899,0.00008822667,0.00001714644,0.000050822266,0.00024271835,0.000016989658,0.0024469353],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987125,0.000024957068,0.000017436905,0.000027001242,0.000028160355,0.000031226224],"domain_scores_gemma":[0.99992585,0.0000115488465,0.000018996321,0.000008486788,0.000011282158,0.00002384052],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000115692856,0.0003143888,0.00037722182,0.0003276783,0.00013514153,0.00023833755,0.00026254254,0.00031228547,0.000657622],"category_scores_gemma":[0.000121470286,0.00013764676,0.00029441377,0.00016675594,0.0002825648,0.00012557102,0.00015887842,0.00058696646,0.00013990156],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008947713,0.00014338133,0.0002727912,0.00010582838,0.000020409685,0.000045016837,0.000022604565,0.00006778703,0.994365,0.00007629841,0.000057316636,0.0039288453],"study_design_scores_gemma":[0.00038464222,0.0028390575,0.008791065,0.00002436017,0.000108734464,0.0002140742,0.00006651204,0.0011773582,0.98067456,0.00017634555,0.005531708,0.000011531604],"about_ca_topic_score_codex":0.0014769582,"about_ca_topic_score_gemma":0.0020236704,"teacher_disagreement_score":0.0014769582,"about_ca_system_score_codex":0.00027312676,"about_ca_system_score_gemma":0.00037957882,"threshold_uncertainty_score":0.0029367208},"labels":[],"label_agreement":null},{"id":"W1758596112","doi":"10.1002/path.4473","title":"Chronic inflammation, lymphangiogenesis, and effect of an anti‐<scp>VEGFR</scp> therapy in a mouse model and in human patients with aspiration pneumonia","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lymphatic System and Diseases","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"","keywords":"Lymphangiogenesis; Medicine; Inflammation; Lung; Aspiration pneumonia; Pneumonia; Pathology; Immunology; Internal medicine; Metastasis; Cancer","score_opus":0.007616034322533396,"score_gpt":0.24660831185480242,"score_spread":0.23899227753226904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1758596112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9880212,0.007424801,0.0016187534,0.00027667536,0.00014402172,0.00016019997,0.00041901824,0.0001423752,0.0017929829],"genre_scores_gemma":[0.9923299,0.0032158198,0.001391568,0.00016660319,0.000052143503,0.00019203636,0.0006554847,0.000011817536,0.0019846652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997528,0.00006432274,0.000024291161,0.000042878026,0.00005789011,0.00005768922],"domain_scores_gemma":[0.99988925,0.000016315675,0.000026271973,0.00001482297,0.000010486209,0.000042874963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041832286,0.00048486685,0.0006631346,0.0002961764,0.00018064772,0.0002964307,0.00018961253,0.00040769842,0.0013053219],"category_scores_gemma":[0.00013582739,0.00016237417,0.000546346,0.0002138217,0.00029567452,0.00024372291,0.0001476083,0.0011788505,0.00028190447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0058692154,0.0025231305,0.00072001753,0.00033796736,0.00007188943,0.00048919575,0.0000622423,0.00047124506,0.97376674,0.00018050282,0.00071092125,0.0147970095],"study_design_scores_gemma":[0.0029146108,0.0875515,0.02076168,0.00006427955,0.0003868192,0.0028481882,0.0001253241,0.0047485423,0.86581624,0.00021954867,0.014518322,0.000044847235],"about_ca_topic_score_codex":0.00043231033,"about_ca_topic_score_gemma":0.00063702336,"teacher_disagreement_score":0.0013053219,"about_ca_system_score_codex":0.00019977178,"about_ca_system_score_gemma":0.00033690126,"threshold_uncertainty_score":0.004366696},"labels":[],"label_agreement":null},{"id":"W1780205146","doi":"10.1002/path.4315","title":"Frequent somatic mutations of the telomerase reverse transcriptase promoter in ovarian clear cell carcinoma but not in other major types of gynaecological malignancy","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"National Center for Advancing Translational Sciences; National Cancer Institute","keywords":"Telomerase reverse transcriptase; Biology; Telomerase; Carcinogenesis; Cancer research; Ovarian cancer; Ovarian carcinoma; Telomere; Somatic cell; Mutation; Clear cell carcinoma; Carcinoma; Cancer; Gene; Genetics","score_opus":0.011454323488533511,"score_gpt":0.2273153441582663,"score_spread":0.21586102066973278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1780205146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984073,0.0009299156,0.00022478947,0.00002146545,0.000007664347,0.000008961666,0.00010792451,0.000009256375,0.00028274456],"genre_scores_gemma":[0.9992095,0.0002757172,0.00026066913,0.0000104219835,0.0000073803835,0.0000053373324,0.00014536912,0.0000023768578,0.000083087456],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99962056,0.000052792166,0.00005148908,0.000093000854,0.00012519133,0.000056877616],"domain_scores_gemma":[0.9984548,0.00038642914,0.00070844294,0.0001360597,0.0001285854,0.00018574503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036544175,0.00016700751,0.00030073445,0.0010619416,0.0002942597,0.0003750092,0.00024186498,0.00036443872,0.0013546473],"category_scores_gemma":[0.0028160466,0.00020969666,0.00023113679,0.0008022051,0.00044606102,0.00020742336,0.00025513946,0.00023508874,0.00024252171],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034062445,0.000021867687,0.9458089,0.00010161088,0.00009749482,0.004695801,0.00015868768,0.000068393936,0.041666295,0.0000750191,0.0001278874,0.006837503],"study_design_scores_gemma":[0.000012709617,0.00010464317,0.97468907,0.000006658534,0.000064447944,0.02061716,0.0001583912,0.00019488916,0.0036890751,0.00007992806,0.00037534573,0.000007747451],"about_ca_topic_score_codex":0.0013388539,"about_ca_topic_score_gemma":0.0025899408,"teacher_disagreement_score":0.0013546473,"about_ca_system_score_codex":0.0002212425,"about_ca_system_score_gemma":0.00033697498,"threshold_uncertainty_score":0.0045316815},"labels":[],"label_agreement":null},{"id":"W1859257957","doi":"10.1002/path.4287","title":"Towards the introduction of the ‘Immunoscore’ in the classification of malignant tumours","year":2013,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":1347,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University Health Network; Ontario Institute for Cancer Research","funders":"National Cancer Institute; Labex Immuno-Oncology; Cancer Research Institute; Qatar National Research Fund; Institut National de la Santé et de la Recherche Médicale; Institut National Du Cancer; Assistance publique-Hôpitaux de Paris; Fonds National de la Recherche Luxembourg; European Commission; Pathological Society of Great Britain and Ireland; National Center for Advancing Translational Sciences; Japan Association for Chemical Innovation; Society for Immunotherapy of Cancer","keywords":"Medicine; Oncology; Colorectal cancer; Cancer staging; Cancer; Stage (stratigraphy); Internal medicine; Immune system; TNM staging system; Neoplasm staging; Immunology; Biology","score_opus":0.07554092438918289,"score_gpt":0.3444991782666527,"score_spread":0.26895825387746986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1859257957","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.030443601,0.2633985,0.41626972,0.19717145,0.060219698,0.0014254273,0.0040382654,0.0018322164,0.025201172],"genre_scores_gemma":[0.119455464,0.11109685,0.6484517,0.06426268,0.03436888,0.0016611927,0.009961674,0.00086694205,0.009874589],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.98831314,0.0047968314,0.0014688631,0.0014502198,0.0032887654,0.00068232947],"domain_scores_gemma":[0.96824014,0.007151433,0.0030693272,0.001682114,0.01670653,0.0031503686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.033026505,0.0017368227,0.0024283333,0.0065086433,0.0010127062,0.0053313505,0.0035537246,0.0030931805,0.0017406772],"category_scores_gemma":[0.034475286,0.00064710405,0.001519446,0.005602694,0.006021746,0.006609122,0.00545157,0.012736958,0.002306829],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000724718,0.00019126077,0.023423716,0.0020194568,0.00024571747,0.00030021468,0.00070075976,0.0020390665,0.0043354505,0.10817262,0.15395124,0.7038958],"study_design_scores_gemma":[0.00013305202,0.00086870894,0.024689585,0.0028864439,0.00020930466,0.0025285985,0.000679195,0.006458924,0.0024128447,0.06458692,0.894281,0.0002654485],"about_ca_topic_score_codex":0.009737046,"about_ca_topic_score_gemma":0.0063283877,"teacher_disagreement_score":0.033026505,"about_ca_system_score_codex":0.0048195953,"about_ca_system_score_gemma":0.01041765,"threshold_uncertainty_score":0.17466295},"labels":[],"label_agreement":null},{"id":"W1878807841","doi":"10.1002/path.4104","title":"The myofibroblast matrix: implications for tissue repair and fibrosis","year":2012,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Wound Healing and Treatments","field":"Medicine","cited_by":765,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institutes of Health; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; European Commission; University of Michigan; National Heart, Lung, and Blood Institute; Heart and Stroke Foundation of Canada","keywords":"Myofibroblast; Extracellular matrix; Fibrosis; Wound healing; Pathology; Cell biology; Biology; Regeneration (biology); Medicine; Immunology","score_opus":0.08283684304056833,"score_gpt":0.426759971398114,"score_spread":0.3439231283575457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1878807841","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008762966,0.9985696,0.00008634244,0.0002295316,0.00017175193,0.0000017327407,0.000006181439,0.0000040494892,0.0008430751],"genre_scores_gemma":[0.0006664149,0.99825543,0.0001565144,0.00011748677,0.00012471598,0.0000033651647,0.000010024591,9.080501e-7,0.00066512596],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99985504,0.000025115583,0.00002118305,0.000022633221,0.000060168306,0.000015743663],"domain_scores_gemma":[0.9997942,0.00008287334,0.000028919114,0.000007185299,0.000057163055,0.000029566934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035664154,0.00063702394,0.0010809592,0.0017746252,0.00041085793,0.0009819869,0.0005642852,0.0011900732,0.0038258648],"category_scores_gemma":[0.0004616958,0.00018568303,0.00033034195,0.0022921828,0.00074061495,0.0015183171,0.00062100915,0.001406714,0.0025281888],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055498713,0.00006848569,0.00017472215,0.014268257,0.000041881598,0.00038615274,0.00012591056,0.00027200856,0.0040312284,0.008235741,0.028141778,0.9441983],"study_design_scores_gemma":[0.0000084860085,0.000057873498,0.0009291849,0.0029613532,0.000030611067,0.0021734866,0.00014455529,0.000058858248,0.0005407907,0.0051920656,0.9878878,0.000014965952],"about_ca_topic_score_codex":0.0007221196,"about_ca_topic_score_gemma":0.0012632717,"teacher_disagreement_score":0.0038258648,"about_ca_system_score_codex":0.00052058697,"about_ca_system_score_gemma":0.0010271383,"threshold_uncertainty_score":0.012798846},"labels":[],"label_agreement":null},{"id":"W1901154960","doi":"10.1002/path.4362","title":"No small surprise – small cell carcinoma of the ovary, hypercalcaemic type, is a malignant rhabdoid tumour","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Children's Hospital; University Health Network; McGill University; McGill University and Génome Québec Innovation Centre; Jewish General Hospital; McGill University Health Centre","funders":"","keywords":"SMARCA4; Biology; Sanger sequencing; Ovary; Pathology; Gene; Cancer research; Mutation; Medicine; Chromatin; Genetics; Chromatin remodeling","score_opus":0.012976912829828803,"score_gpt":0.21952081629475595,"score_spread":0.20654390346492715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1901154960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8817931,0.081334755,0.0074346024,0.003940643,0.00050802075,0.000044788376,0.00075304543,0.00027812403,0.02391297],"genre_scores_gemma":[0.97993934,0.01429195,0.0021963373,0.00048294014,0.00008260103,0.0000066107136,0.00035277088,0.000025936944,0.002621488],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99984527,0.00001669918,0.000020595578,0.000053631993,0.000047732312,0.000016036136],"domain_scores_gemma":[0.9997888,0.00005754843,0.0000651646,0.000029735023,0.00003294105,0.000025825395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022474206,0.00015772671,0.00020668302,0.00034672496,0.0003058305,0.0005460794,0.00021962458,0.00041019323,0.00070584],"category_scores_gemma":[0.0009186801,0.00013259878,0.00014092044,0.00027445963,0.00075027504,0.0004742712,0.00022221648,0.00021113112,0.00031201408],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061024877,0.00003182938,0.21549743,0.0015128193,0.0002225197,0.09655207,0.0010949889,0.0006472985,0.46231964,0.007917752,0.005598761,0.20799461],"study_design_scores_gemma":[0.000034523182,0.00025136556,0.20079848,0.00031393918,0.00035615484,0.4553538,0.001234204,0.00083709206,0.12783687,0.0063519324,0.20655279,0.000078829624],"about_ca_topic_score_codex":0.0011192956,"about_ca_topic_score_gemma":0.0025350535,"teacher_disagreement_score":0.0011192956,"about_ca_system_score_codex":0.00042417337,"about_ca_system_score_gemma":0.0004479557,"threshold_uncertainty_score":0.0030776262},"labels":[],"label_agreement":null},{"id":"W1901535418","doi":"10.1002/path.4196","title":"Biallelic <i><scp>DICER1</scp></i> mutations occur in Wilms tumours","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Congenital Diaphragmatic Hernia Studies","field":"Medicine","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Montreal Children's Hospital; Jewish General Hospital","funders":"Fondation de l'Hôpital général juif; Jewish General Hospital","keywords":"Germline; Missense mutation; Biology; Germline mutation; Somatic cell; Genetics; Mutation; Exon; Ribonuclease III; Dicer; Endoribonuclease; Cancer research; RNase P; Molecular biology; Gene; RNA; Small interfering RNA; RNA interference","score_opus":0.01803494511857433,"score_gpt":0.2730209116273967,"score_spread":0.2549859665088224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1901535418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978211,0.0005238504,0.0006524437,0.000015836225,0.000004118632,0.000010376383,0.00017512552,0.000032591026,0.0007645708],"genre_scores_gemma":[0.9991715,0.00013947349,0.00028059332,0.000009952763,0.0000063799334,0.0000041875032,0.00014092738,0.000008060631,0.00023898299],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999726,0.000023721079,0.00004247323,0.000079442136,0.00008405852,0.000044334058],"domain_scores_gemma":[0.999589,0.00007197159,0.00019137355,0.00004223409,0.000031893796,0.00007346828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016251311,0.0002970222,0.00018282172,0.0009477856,0.0002614841,0.00024633337,0.00019319696,0.00041305655,0.0014024776],"category_scores_gemma":[0.00048551295,0.0002035201,0.00020514219,0.0004939731,0.0003336097,0.00017203925,0.00030902965,0.00019295156,0.0005554514],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033609956,0.000052887983,0.16283542,0.00011752863,0.00008246027,0.012424821,0.00033274904,0.0004280962,0.8126769,0.00039217368,0.0003840364,0.009936782],"study_design_scores_gemma":[0.000040347768,0.00032764813,0.70762056,0.000029170198,0.00015771485,0.13236153,0.0002431898,0.0013158325,0.15034902,0.00047584856,0.007046322,0.000032811575],"about_ca_topic_score_codex":0.0004986309,"about_ca_topic_score_gemma":0.0004974624,"teacher_disagreement_score":0.0014024776,"about_ca_system_score_codex":0.00013348313,"about_ca_system_score_gemma":0.00010568906,"threshold_uncertainty_score":0.00469172},"labels":[],"label_agreement":null},{"id":"W1919025398","doi":"10.1002/path.4015","title":"Activation of protein kinase Cδ leads to increased pancreatic acinar cell dedifferentiation in the absence of MIST1","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children’s Health Research Institute; Western University","funders":"Canadian Institutes of Health Research","keywords":"Acinar cell; Protein kinase C; Ductal cells; Biology; Rottlerin; Progenitor cell; Cell biology; Cell culture; Kinase; Cancer research; Molecular biology; Endocrinology; Internal medicine; Stem cell; Pancreas; Medicine","score_opus":0.019876549360932947,"score_gpt":0.26436793412008613,"score_spread":0.2444913847591532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1919025398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964224,0.0007459666,0.0008610299,0.0001273859,0.000046403384,0.000023287248,0.0007520852,0.000044161643,0.0009772917],"genre_scores_gemma":[0.9945462,0.00067771424,0.0011135801,0.000067291134,0.000007923946,0.00004775362,0.0006974693,0.000024328832,0.0028178454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995938,0.00005204442,0.000076837634,0.00008130142,0.00010376192,0.00009227544],"domain_scores_gemma":[0.99957913,0.00008514773,0.00012262932,0.000054446802,0.000022484317,0.00013611956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002272619,0.0003471323,0.00033517243,0.0003321581,0.00019158686,0.0004185921,0.00036696804,0.00048082194,0.0021478832],"category_scores_gemma":[0.00019867782,0.00026929114,0.00037149186,0.0002870858,0.00034166765,0.00022743012,0.0002867682,0.00095855433,0.00061756663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038379763,0.00006639841,0.00032323375,0.000048521073,0.0000064676688,0.00014142237,0.000021896958,0.000103313585,0.9981225,0.00007668606,0.000057745077,0.0006479205],"study_design_scores_gemma":[0.00006170895,0.0005949424,0.014192864,0.000016214255,0.00002389486,0.00084579986,0.00013846843,0.0018265897,0.97991735,0.00007561287,0.0022955183,0.000011013959],"about_ca_topic_score_codex":0.0009730879,"about_ca_topic_score_gemma":0.0010450045,"teacher_disagreement_score":0.0021478832,"about_ca_system_score_codex":0.00037517672,"about_ca_system_score_gemma":0.00029095728,"threshold_uncertainty_score":0.0071853995},"labels":[],"label_agreement":null},{"id":"W1930916494","doi":"10.1002/path.4334","title":"Fibroblast growth factor receptor 3 activation plays a causative role in urothelial cancer pathogenesis in cooperation with <i>Pten</i> loss in mice","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Fibroblast Growth Factor Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University Health Network","funders":"Medical Research Council; University of Glasgow; Cancer Research UK","keywords":"PTEN; Cancer research; Biology; Urothelial Cell; Urothelium; Receptor tyrosine kinase; PI3K/AKT/mTOR pathway; Pathogenesis; Growth factor receptor; Signal transduction; Cell biology; Immunology; Endocrinology","score_opus":0.008537941577713457,"score_gpt":0.24972261365458134,"score_spread":0.2411846720768679,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1930916494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98823094,0.0013627332,0.0064689005,0.00033917814,0.000042152566,0.00009229358,0.0011651496,0.0005710924,0.001727535],"genre_scores_gemma":[0.9903114,0.0009467715,0.003319347,0.00012976404,0.000021792206,0.000114663904,0.00062097516,0.00017133707,0.004363919],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930036,0.000120546654,0.00009346464,0.00018346494,0.00016344045,0.00013867771],"domain_scores_gemma":[0.9993243,0.00006769804,0.00032537547,0.000060577975,0.000024017332,0.00019804836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004017324,0.0010652301,0.00047345294,0.0014660843,0.00042391423,0.00073566154,0.00053094176,0.0010793996,0.0030599905],"category_scores_gemma":[0.00023406128,0.0006577446,0.001069377,0.00044382113,0.00076663715,0.00047983823,0.0006945725,0.0014399176,0.0009019377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026639455,0.000047886417,0.0004407839,0.000034825924,0.000013587227,0.0002864578,0.000025581861,0.000074459,0.99777716,0.00019610862,0.000052470754,0.00078425347],"study_design_scores_gemma":[0.000082482664,0.00066890754,0.014079109,0.000025641453,0.00008587923,0.0027472088,0.00008851377,0.0013553473,0.9775669,0.00024791982,0.003027881,0.000024214014],"about_ca_topic_score_codex":0.0008098253,"about_ca_topic_score_gemma":0.0009913901,"teacher_disagreement_score":0.0030599905,"about_ca_system_score_codex":0.0004902743,"about_ca_system_score_gemma":0.00038058992,"threshold_uncertainty_score":0.0102366805},"labels":[],"label_agreement":null},{"id":"W1939044377","doi":"10.1002/path.4225","title":"Familial rhabdoid tumour '<i>avant la lettre</i>'—from pathology review to exome sequencing and back again","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; McGill University Health Centre; McGill University; BC Cancer Agency; Montreal Children's Hospital; McGill University and Génome Québec Innovation Centre; Jewish General Hospital","funders":"Medical Research Council; Sparks; Canadian Institutes of Health Research; Susan G. Komen; Rivkin Center for Ovarian Cancer","keywords":"Exome sequencing; Biology; SMARCA4; Nonsense mutation; Pathology; Germline mutation; Teratoma; Exome; Context (archaeology); Sanger sequencing; Immature teratoma; Mutation; Germ cell tumors; Medicine; Epigenetics; Genetics; Chromatin remodeling; Gene","score_opus":0.01540321709331258,"score_gpt":0.25864355749519635,"score_spread":0.24324034040188378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1939044377","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019678099,0.9853521,0.0005518757,0.0074232714,0.0020979734,0.0000047051476,0.00005381229,0.000049800143,0.002498579],"genre_scores_gemma":[0.01961219,0.95966285,0.0008906934,0.009746138,0.006036103,0.000011082098,0.00020654025,0.000025038427,0.0038093247],"study_design_codex":"design_other","study_design_gemma":"case_report","domain_scores_codex":[0.99979705,0.000035133307,0.00003419781,0.000053656517,0.0000528442,0.000027232803],"domain_scores_gemma":[0.9990802,0.00041500657,0.0001297008,0.000034171237,0.0002613114,0.00007960242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047405987,0.00033185742,0.0004956333,0.0019433202,0.00028205206,0.0007954365,0.0005739371,0.0011288798,0.0017123896],"category_scores_gemma":[0.0011360823,0.00024316886,0.00024556537,0.0009647626,0.00069494796,0.0015219707,0.00048633097,0.0010456752,0.0012296899],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010910671,0.000032937085,0.0018230034,0.0056850654,0.00013359393,0.013550435,0.0003179092,0.00033604543,0.0047905864,0.0060162814,0.2138539,0.7533511],"study_design_scores_gemma":[0.000011043011,0.000054391025,0.0030147324,0.0025231896,0.00006858858,0.053862736,0.00023724396,0.00008111616,0.0012379156,0.0016423485,0.93723035,0.000036367623],"about_ca_topic_score_codex":0.0018372044,"about_ca_topic_score_gemma":0.0021035632,"teacher_disagreement_score":0.0019433202,"about_ca_system_score_codex":0.0007173984,"about_ca_system_score_gemma":0.00070906506,"threshold_uncertainty_score":0.005728483},"labels":[],"label_agreement":null},{"id":"W1941095565","doi":"10.1002/path.4099","title":"Oncogene‐dependent control of <scp>miRNA</scp> biogenesis and metastatic progression in a model of undifferentiated pleomorphic sarcoma","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institute of Allergy and Infectious Diseases; Alexander and Margaret Stewart Trust","keywords":"Dicer; Biology; Cancer research; Oncogene; microRNA; Metastasis; KRAS; Cancer; Genetics; Gene; Cell cycle; RNA interference; RNA","score_opus":0.041492267451058565,"score_gpt":0.306576222952567,"score_spread":0.26508395550150843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1941095565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958417,0.0005026096,0.0015402397,0.00013932388,0.000039390554,0.000058618924,0.00038899708,0.000068308844,0.0014208135],"genre_scores_gemma":[0.99424887,0.0004128611,0.0023105757,0.00004216467,0.000007634572,0.00007149785,0.0003475243,0.000023143079,0.0025356424],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996351,0.00008265211,0.000051288847,0.00006161968,0.00011073574,0.000058643906],"domain_scores_gemma":[0.9997086,0.00006784937,0.000070356386,0.000054641234,0.00002008822,0.000078451696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036141498,0.00028483957,0.00034783126,0.00042260435,0.00022582506,0.00038806853,0.00042392313,0.00043998176,0.001175771],"category_scores_gemma":[0.00023137406,0.0003128448,0.00033540995,0.0002236619,0.00047896837,0.00026063508,0.00026682083,0.0008280783,0.00039671644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021311526,0.00009739344,0.00009879404,0.000025450101,0.0000036443191,0.00009012885,0.000024284378,0.00022457397,0.99836475,0.0002716651,0.00005269749,0.0005334095],"study_design_scores_gemma":[0.00008642253,0.0010136632,0.0025117085,0.000008169669,0.000014254449,0.000422954,0.00004258954,0.004319557,0.989106,0.00015693066,0.0023048965,0.000012762943],"about_ca_topic_score_codex":0.0016560387,"about_ca_topic_score_gemma":0.001981683,"teacher_disagreement_score":0.0016560387,"about_ca_system_score_codex":0.00061396527,"about_ca_system_score_gemma":0.0004127609,"threshold_uncertainty_score":0.004454732},"labels":[],"label_agreement":null},{"id":"W1941960325","doi":"10.1002/path.4633","title":"Dual loss of the <scp>SWI</scp>/<scp>SNF</scp> complex <scp>ATPases SMARCA4</scp>/<scp>BRG1</scp> and <scp>SMARCA2</scp>/<scp>BRM</scp> is highly sensitive and specific for small cell carcinoma of the ovary, hypercalcaemic type","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":225,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; Terry Fox Foundation; Rivkin Center for Ovarian Cancer","keywords":"SMARCA4; Cancer research; Biology; Trichostatin A; Histone deacetylase; Chromatin remodeling; Chromatin; Histone; Genetics; Gene","score_opus":0.03324258209698763,"score_gpt":0.24730251263209638,"score_spread":0.21405993053510874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1941960325","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967752,0.0012739315,0.000837677,0.000030150806,0.000010281762,0.000008064508,0.00022848416,0.000027765975,0.0008083473],"genre_scores_gemma":[0.9982286,0.00027559948,0.00031522388,0.000019817704,0.000004309988,0.000009458019,0.00031510007,0.000006291873,0.00082556653],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99972636,0.00003107104,0.00002964952,0.00007079661,0.00009302756,0.000049057435],"domain_scores_gemma":[0.9997979,0.00003404753,0.000063628875,0.000026624719,0.000028993092,0.000048841255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019390286,0.00025368502,0.0002999227,0.0006986414,0.00016459002,0.00025214753,0.00019275665,0.00029587952,0.001736402],"category_scores_gemma":[0.00031770108,0.00016835694,0.00025030176,0.00029232862,0.00039140022,0.00015593626,0.00024764787,0.0002998075,0.00027263092],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020980394,0.000013932086,0.015812492,0.00004717027,0.00003553451,0.0002690285,0.000027796586,0.00004928583,0.9793596,0.00009480606,0.00007061835,0.0040100235],"study_design_scores_gemma":[0.00004279429,0.0006801024,0.3257078,0.000015565041,0.0001243214,0.012572902,0.0001324911,0.0013867428,0.6512694,0.00021439325,0.007839993,0.000013624058],"about_ca_topic_score_codex":0.001028041,"about_ca_topic_score_gemma":0.0011605474,"teacher_disagreement_score":0.001736402,"about_ca_system_score_codex":0.00028371776,"about_ca_system_score_gemma":0.00013386628,"threshold_uncertainty_score":0.0058088303},"labels":[],"label_agreement":null},{"id":"W1965087092","doi":"10.1002/path.2849","title":"Conditional β1‐integrin‐deficient mice display impaired pancreatic β cell function","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children’s Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Arthritis Society","keywords":"Conditional gene knockout; Integrin; Endocrinology; Internal medicine; Biology; Collagen receptor; Cell growth; Protein kinase B; Phosphorylation; Cell biology; Cell; Medicine; Phenotype","score_opus":0.02451692608261759,"score_gpt":0.24019394773599104,"score_spread":0.21567702165337344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965087092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99376607,0.0013567433,0.002598102,0.000106754596,0.000033539294,0.00002285524,0.00091063284,0.00017132753,0.0010339993],"genre_scores_gemma":[0.9827716,0.0024896755,0.0043470096,0.0001436468,0.00003006708,0.00010871484,0.0018258446,0.0001660496,0.00811742],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960893,0.000035526766,0.000049629027,0.00011794747,0.00010098391,0.000087055814],"domain_scores_gemma":[0.9994809,0.000054136144,0.00025804972,0.000031963882,0.000022696177,0.00015226865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025497214,0.0011558061,0.0005032003,0.0009330639,0.00023961307,0.000755017,0.0004524161,0.0007998309,0.0038217232],"category_scores_gemma":[0.0001780671,0.00049048767,0.000499253,0.00034775864,0.0005362416,0.00042512425,0.00034633893,0.0016647982,0.0008059883],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019654515,0.000045207024,0.00027192122,0.000032000626,0.000008808886,0.000103593455,0.000017651282,0.000030196159,0.99846303,0.000067866626,0.000029732999,0.00073348056],"study_design_scores_gemma":[0.00011353497,0.001028043,0.023904484,0.000034017994,0.00010361204,0.0018127869,0.00012337675,0.00085610634,0.9690015,0.00012707943,0.0028739064,0.000021495864],"about_ca_topic_score_codex":0.00051148824,"about_ca_topic_score_gemma":0.0007641048,"teacher_disagreement_score":0.0038217232,"about_ca_system_score_codex":0.0003267509,"about_ca_system_score_gemma":0.00020057436,"threshold_uncertainty_score":0.012784958},"labels":[],"label_agreement":null},{"id":"W1967121358","doi":"10.1002/path.1468","title":"NOV (CCN3) regulation in the growth plate and CCN family member expression in cartilage neoplasia","year":2003,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Connective Tissue Growth Factor Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"National Cancer Institute; Canada Research Chairs","keywords":"Cartilage; Chondrocyte; CTGF; Biology; Cellular differentiation; Pathology; Cell biology; Cancer research; Medicine; Growth factor; Anatomy; Genetics; Gene; Receptor","score_opus":0.022182747302491073,"score_gpt":0.28638543405808603,"score_spread":0.26420268675559494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967121358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946636,0.0026069605,0.0010960728,0.000045901164,0.000008811468,0.000007063697,0.00016580973,0.000021647733,0.0013842551],"genre_scores_gemma":[0.9952988,0.0009137839,0.0012373043,0.000031514013,0.000003643346,0.000011428236,0.00031310142,0.0000075574217,0.0021828809],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998939,0.000019097542,0.0000076046686,0.000021298023,0.000038231618,0.00001979092],"domain_scores_gemma":[0.99988043,0.000021978994,0.000037544854,0.000010928832,0.00002019824,0.000028918521],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009639473,0.00022286086,0.00011311891,0.00028666435,0.00017065297,0.00020858018,0.000103193306,0.00027941572,0.0006368688],"category_scores_gemma":[0.00013802922,0.000107413056,0.00014790276,0.00015453289,0.0003108973,0.00015416274,0.00016861015,0.00021064171,0.0001643963],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046972724,0.0000021742576,0.00038029242,0.000009959059,8.5433174e-7,0.000049654693,0.000007412514,0.000030347022,0.99905914,0.000039869796,0.00000983394,0.00036359415],"study_design_scores_gemma":[0.0000067421793,0.00009919341,0.047309943,0.000004385338,0.000006563387,0.00070679345,0.00004228867,0.0005116941,0.94957167,0.000056835004,0.0016790762,0.000004855265],"about_ca_topic_score_codex":0.0019518028,"about_ca_topic_score_gemma":0.004443344,"teacher_disagreement_score":0.0019518028,"about_ca_system_score_codex":0.0004393757,"about_ca_system_score_gemma":0.00019671387,"threshold_uncertainty_score":0.003880918},"labels":[],"label_agreement":null},{"id":"W1968578021","doi":"10.1002/path.4056","title":"Use of mutation profiles to refine the classification of endometrial carcinomas","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Endometrial and Cervical Cancer Treatments","field":"Medicine","cited_by":299,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Cancer Agency","funders":"National Cancer Institute; University of British Columbia; Michael Smith Health Research BC; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre","keywords":"PTEN; KRAS; Serous fluid; Carcinosarcoma; ARID1A; Carcinoma; Cancer research; Mutation; Clear cell; Endometrial cancer; Biology; Serous carcinoma; Gene mutation; Oncology; Gene; Medicine; Pathology; Internal medicine; Cancer; Genetics; PI3K/AKT/mTOR pathway","score_opus":0.12120969518083166,"score_gpt":0.34570791574816767,"score_spread":0.224498220567336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968578021","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889311,0.0010799047,0.007551492,0.0000938399,0.000026772568,0.00012625816,0.0008453166,0.000109944056,0.0012353959],"genre_scores_gemma":[0.9869277,0.00034875152,0.01141895,0.00005653919,0.000020763238,0.000053745636,0.00092605676,0.000032591506,0.00021499013],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99828976,0.00054552365,0.0003838319,0.00034664053,0.00027825477,0.00015606354],"domain_scores_gemma":[0.9951439,0.002029699,0.00087697967,0.0006628957,0.0010374205,0.0002490619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004691794,0.00057272124,0.0006508665,0.0065630306,0.00037564264,0.0013311006,0.0006098569,0.0004380178,0.00054177246],"category_scores_gemma":[0.012346039,0.00022654256,0.00052137085,0.0014319543,0.0002806872,0.00052990334,0.0009622959,0.00051076594,0.00046098165],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076271634,0.00003768886,0.9117406,0.00011116761,0.00022845076,0.0005477615,0.0004701402,0.0018508326,0.029094838,0.00026025609,0.00038691878,0.054508567],"study_design_scores_gemma":[0.000038327373,0.00016627484,0.953968,0.00011243619,0.00026415312,0.0022516754,0.00062656536,0.025939079,0.012485823,0.000981682,0.0031227465,0.00004319899],"about_ca_topic_score_codex":0.0022507086,"about_ca_topic_score_gemma":0.003183835,"teacher_disagreement_score":0.0065630306,"about_ca_system_score_codex":0.0003562744,"about_ca_system_score_gemma":0.00031713667,"threshold_uncertainty_score":0.024812877},"labels":[],"label_agreement":null},{"id":"W1969619428","doi":"10.1002/path.2337","title":"Increased uptake of non‐pathogenic <i>E. coli</i> via the follicle‐associated epithelium in longstanding ileal Crohn's disease","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Crohn's disease; Epithelium; Intestinal epithelium; Follicle; Disease; Ileum; Biology; Microbiology; Immunology; Medicine; Internal medicine; Pathology; Endocrinology","score_opus":0.009097729009107137,"score_gpt":0.23069097965566904,"score_spread":0.2215932506465619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969619428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989189,0.0006490038,0.00013011866,0.000015724783,0.0000035619562,0.0000028113375,0.00003092355,0.000007299952,0.0002417908],"genre_scores_gemma":[0.99935955,0.0001916717,0.00020135334,0.000020787447,0.000004850725,0.0000024132921,0.00004718038,0.0000036571676,0.00016861237],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987996,0.0000149720945,0.000016011949,0.000034406155,0.000027574844,0.000027164559],"domain_scores_gemma":[0.99977094,0.000037109112,0.00006678831,0.000023048076,0.000031308216,0.00007085212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015311543,0.00017293048,0.00027739155,0.0003036437,0.00021537715,0.00041210925,0.000105315026,0.00045391812,0.0009707614],"category_scores_gemma":[0.00030469405,0.00014626858,0.00018728779,0.00015372237,0.00025519103,0.00038659098,0.00026140135,0.000276776,0.00018769556],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00088054035,0.00003594894,0.03047483,0.00011372436,0.000016492262,0.0009835056,0.00026937132,0.000026757616,0.9645949,0.00004428226,0.000040522995,0.0025191314],"study_design_scores_gemma":[0.00003120727,0.001383161,0.889328,0.000022456734,0.000059673624,0.009052439,0.00057743554,0.00036442536,0.09714598,0.00014587972,0.0018735803,0.000015606573],"about_ca_topic_score_codex":0.00043090424,"about_ca_topic_score_gemma":0.000404114,"teacher_disagreement_score":0.0009707614,"about_ca_system_score_codex":0.00017497709,"about_ca_system_score_gemma":0.0000679219,"threshold_uncertainty_score":0.0032474995},"labels":[],"label_agreement":null},{"id":"W1970534185","doi":"10.1002/path.2507","title":"The development of multiple bladder tumour recurrences in relation to the <i>FGFR3</i> mutation status of the primary tumour","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Bladder and Urothelial Cancer Treatments","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"","keywords":"Medicine; Cystoscopy; Mutation; Stage (stratigraphy); Disease; Urinary bladder; Urinary system; Internal medicine; Oncology; Gastroenterology; Biology; Gene","score_opus":0.028640353909450612,"score_gpt":0.2828662339478266,"score_spread":0.254225880038376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970534185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99919575,0.00048214258,0.00010595904,0.000011834453,0.0000022691029,0.0000033019285,0.000030108144,0.000004322953,0.00016442478],"genre_scores_gemma":[0.9996915,0.00009168863,0.00008149646,0.0000044679696,0.000005573868,0.0000028936101,0.000047375663,0.000001645619,0.00007345675],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99948335,0.00011042778,0.00006409491,0.00012535657,0.00009088888,0.00012581937],"domain_scores_gemma":[0.99770963,0.0004686825,0.0012543252,0.00015867267,0.00013754779,0.00027117296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004851498,0.00018768931,0.00038603434,0.00050034205,0.00034051406,0.0004581563,0.00023904351,0.00040690112,0.00082475913],"category_scores_gemma":[0.0023034478,0.00024011779,0.00039098217,0.00036935523,0.00025260568,0.00034773163,0.00043730106,0.00047160574,0.00018980626],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002810798,0.000017351715,0.99165744,0.000013577161,0.000038468865,0.0012111977,0.000119481934,0.00009902009,0.0016937951,0.000012371794,0.000035467037,0.004820762],"study_design_scores_gemma":[0.0000068651275,0.00026207737,0.9893902,0.0000070605515,0.00006566227,0.0085783545,0.00011392937,0.0003537834,0.0009415025,0.000022884895,0.0002491526,0.000008510708],"about_ca_topic_score_codex":0.001704596,"about_ca_topic_score_gemma":0.0014858376,"teacher_disagreement_score":0.001704596,"about_ca_system_score_codex":0.00029004965,"about_ca_system_score_gemma":0.00018201221,"threshold_uncertainty_score":0.003389299},"labels":[],"label_agreement":null},{"id":"W1973758764","doi":"10.1002/(sici)1096-9896(200002)190:3<310::aid-path525>3.0.co;2-p","title":"Interactions between cancer cells and the endothelium in metastasis","year":2000,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Angiogenesis and VEGF in Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":288,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Northeast Cancer Centre; University of Manitoba","funders":"Medical Research Council; National Institutes of Health","keywords":"Endothelium; Metastasis; Cancer cell; Selectin; Cell adhesion molecule; Soluble cell adhesion molecules; Cancer; Cell biology; Chemistry; Cell adhesion; Matrix metalloproteinase; Immunology; Cancer research; Biology; Integrin; Cell; Biochemistry; Endocrinology","score_opus":0.04084528490379473,"score_gpt":0.3537391260943424,"score_spread":0.31289384119054764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973758764","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017085207,0.99738735,0.0002535527,0.0003506446,0.00029773638,0.0000052230644,0.0000057636735,0.000008460957,0.0015204401],"genre_scores_gemma":[0.0011922186,0.9969644,0.00019457776,0.00014188027,0.00028685952,0.0000068009713,0.000012225368,0.0000012176992,0.0011998574],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997867,0.00004476177,0.000022698052,0.000037320406,0.00008595902,0.000022714208],"domain_scores_gemma":[0.9997632,0.00008540277,0.00003212573,0.000009802907,0.000065813816,0.00004362429],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006907037,0.0009791935,0.0014504665,0.0018547499,0.00053470634,0.0013753638,0.001170394,0.0020480452,0.0027396036],"category_scores_gemma":[0.00046202273,0.00035720193,0.00028624022,0.002167891,0.0011886711,0.0021509645,0.00078502606,0.0017094527,0.003610458],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008674232,0.00007889344,0.00025885436,0.008479478,0.000039301347,0.0008259368,0.00014382006,0.00067932904,0.0053704563,0.012592326,0.037681125,0.9337637],"study_design_scores_gemma":[0.00001712614,0.00006123498,0.0007340637,0.0012367135,0.000027239385,0.0025682414,0.00007958735,0.000097287666,0.0008356953,0.005176895,0.98914975,0.000016278227],"about_ca_topic_score_codex":0.0009196444,"about_ca_topic_score_gemma":0.0015241941,"teacher_disagreement_score":0.0027396036,"about_ca_system_score_codex":0.001244334,"about_ca_system_score_gemma":0.00096319435,"threshold_uncertainty_score":0.009164929},"labels":[],"label_agreement":null},{"id":"W1974667893","doi":"10.1002/(sici)1096-9896(200006)191:2<208::aid-path618>3.0.co;2-6","title":"Altered expression of high-molecular-weight calmodulin-binding protein in human ischaemic myocardium","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Calpain Protease Function and Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"University of Saskatchewan","keywords":"Calpain; Western blot; Cardiac muscle; Ischemia; Myocyte; Blot; Calpastatin; Calmodulin; Biology; Sarcolemma; Endocrinology; Internal medicine; Molecular biology; Biochemistry; Medicine; Enzyme","score_opus":0.0063552317551271885,"score_gpt":0.23550447506023092,"score_spread":0.22914924330510372,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974667893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957695,0.0028486762,0.0007110652,0.000026555657,0.000012970019,0.000020196314,0.00010631029,0.00001525222,0.0004895434],"genre_scores_gemma":[0.99719596,0.0010876803,0.0006631675,0.000025495423,0.000026011123,0.000023245771,0.0003165629,0.0000051108373,0.00065672473],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993527,0.000007976006,0.0000058223072,0.000021684587,0.000013242256,0.000016013202],"domain_scores_gemma":[0.9998946,0.000018267072,0.00003559774,0.0000078759695,0.000012975919,0.000030580504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015238252,0.0001994973,0.00024106471,0.0005665927,0.00014648757,0.0002183634,0.0001317321,0.00029170222,0.0012493797],"category_scores_gemma":[0.00027766963,0.00014050651,0.00012633874,0.0003045413,0.000227603,0.00012185393,0.0001565335,0.00020159034,0.00027050573],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071992504,0.000056776815,0.010209405,0.0001651434,0.000023940422,0.0032588907,0.00025421786,0.0000376723,0.9804638,0.000074163654,0.000088092434,0.004647887],"study_design_scores_gemma":[0.00012777111,0.0016753492,0.7539418,0.000040568746,0.00016192514,0.019374868,0.00043010994,0.001050562,0.21922423,0.0002791358,0.003671742,0.00002191059],"about_ca_topic_score_codex":0.0002987153,"about_ca_topic_score_gemma":0.00018224718,"teacher_disagreement_score":0.0012493797,"about_ca_system_score_codex":0.00010071381,"about_ca_system_score_gemma":0.00007197432,"threshold_uncertainty_score":0.004179597},"labels":[],"label_agreement":null},{"id":"W1975003408","doi":"10.1002/path.1981","title":"A marginal zone phenotype in follicular lymphoma with t(14;18) is associated with secondary cytogenetic aberrations typical of marginal zone lymphoma","year":2006,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"","keywords":"Follicular lymphoma; Marginal zone; Lymphoma; Phenotype; Biology; Follicular phase; Pathology; Cancer research; Medicine; Immunology; Genetics; Gene; B cell; Antibody","score_opus":0.012051194654928762,"score_gpt":0.23893845063369426,"score_spread":0.2268872559787655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975003408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993345,0.00012105583,0.00021564018,0.000008813692,0.000001256559,0.0000071422705,0.000026893973,0.000009911863,0.0002746803],"genre_scores_gemma":[0.9996879,0.00004749085,0.00012945956,0.000006574861,0.000005744335,0.000004211472,0.00004267812,0.0000026731784,0.0000734067],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998357,0.000024876816,0.000014283482,0.000041424028,0.00004021228,0.000043526055],"domain_scores_gemma":[0.99947125,0.00011983328,0.00020046186,0.000052247487,0.00004257664,0.000113762806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018095545,0.00028355038,0.00026077975,0.0006804743,0.00022916995,0.00028696758,0.00022179226,0.00034193776,0.0021967334],"category_scores_gemma":[0.0008870841,0.00016538968,0.00015203723,0.000404863,0.00047821656,0.00017641312,0.00032783143,0.00023615653,0.00039691787],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009791416,0.00008646972,0.7018994,0.00011330365,0.00006155538,0.03442615,0.0006493535,0.00013877753,0.24608421,0.0003115843,0.00027885934,0.014971211],"study_design_scores_gemma":[0.000081003986,0.00071056036,0.7799594,0.000012082888,0.00009212893,0.20303127,0.0003107232,0.0004641022,0.012962276,0.00029635086,0.0020639584,0.00001612413],"about_ca_topic_score_codex":0.00064828305,"about_ca_topic_score_gemma":0.00066862593,"teacher_disagreement_score":0.0021967334,"about_ca_system_score_codex":0.00015425523,"about_ca_system_score_gemma":0.0001114733,"threshold_uncertainty_score":0.007348776},"labels":[],"label_agreement":null},{"id":"W1975046445","doi":"10.1002/(sici)1096-9896(200001)190:1<47::aid-path506>3.0.co;2-o","title":"Distinct B-cell clonal bands inHelicobacter pylori gastritis with lymphoid hyperplasia","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Cancer Agency; University of Saskatchewan; Royal University Hospital","funders":"","keywords":"Pathology; MALT lymphoma; Gastritis; Helicobacter pylori; Lymphoid hyperplasia; Chronic gastritis; Pseudolymphoma; Biology; Lymphoma; B cell; Polymerase chain reaction; Mucosa-associated lymphoid tissue; Antibody; Biopsy; Lymphatic system; Medicine; Immunology; Gene","score_opus":0.009746446218519503,"score_gpt":0.23036589843130717,"score_spread":0.22061945221278767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975046445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999057,0.00043380022,0.00020141796,0.0000045658803,0.0000014240468,0.0000069440207,0.000010616496,0.0000065057898,0.00027770826],"genre_scores_gemma":[0.9993623,0.00012878307,0.00031071,0.000015111555,0.0000058456244,0.000005873985,0.00004816266,0.0000024150254,0.00012096711],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997857,0.000041476313,0.000024713032,0.00004818858,0.00005614646,0.000043840733],"domain_scores_gemma":[0.99974185,0.000061382954,0.00008048195,0.000026593232,0.000041406754,0.000048331254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031624388,0.00025499208,0.00019060877,0.0007775309,0.00021195345,0.00024370039,0.00014031625,0.0002502006,0.0016587488],"category_scores_gemma":[0.0006139266,0.00021196337,0.00013433967,0.00026934044,0.0003898195,0.00018709074,0.00028904568,0.00013864605,0.0003194514],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007384736,0.00010078978,0.6540179,0.00015553682,0.00005468725,0.009433376,0.0005821517,0.000064387576,0.31774774,0.00010839617,0.000111729365,0.016884787],"study_design_scores_gemma":[0.000072924195,0.0006714643,0.91885453,0.000027690308,0.000066791035,0.05992233,0.0003648008,0.00029212993,0.018477773,0.000103847124,0.0011371431,0.000008696066],"about_ca_topic_score_codex":0.0003816259,"about_ca_topic_score_gemma":0.0006528321,"teacher_disagreement_score":0.0016587488,"about_ca_system_score_codex":0.0001236734,"about_ca_system_score_gemma":0.00009026309,"threshold_uncertainty_score":0.0055490136},"labels":[],"label_agreement":null},{"id":"W1976862232","doi":"10.1002/path.3985","title":"Characterization of the chromosomal translocation t(10;17)(q22;p13) in clear cell sarcoma of kidney","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital","funders":"Science Foundation Ireland","keywords":"Chromosomal translocation; Biology; Breakpoint; Karyotype; Genetics; Exon; Chromosome; Wilms' tumor; Cancer; Cancer research; Gene","score_opus":0.005582845855295547,"score_gpt":0.21143182144733033,"score_spread":0.20584897559203477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976862232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986933,0.00021095808,0.0007254257,0.000019133568,0.0000028884172,0.000022567181,0.000075593074,0.000008849715,0.00024137174],"genre_scores_gemma":[0.9983437,0.00022650482,0.00096726563,0.000016649026,0.000004222089,0.000014026759,0.00024802188,0.0000051769052,0.00017460773],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99970776,0.000029960895,0.00003136086,0.00007735181,0.000088920744,0.00006469746],"domain_scores_gemma":[0.9993343,0.00022251921,0.00018279858,0.000051933246,0.00008117883,0.00012741977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025274782,0.00027132168,0.00028065723,0.0012118043,0.00022751685,0.00043459883,0.00026353062,0.0005931369,0.0008807997],"category_scores_gemma":[0.0010202874,0.00026833056,0.00021705359,0.0006704173,0.00055078644,0.00020314244,0.00041986138,0.00030220347,0.00038079915],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038612765,0.00008882913,0.22827895,0.00015245727,0.000040527968,0.03264641,0.0006316455,0.0003449289,0.7279143,0.00020466438,0.00010254296,0.009208672],"study_design_scores_gemma":[0.00006256762,0.0010644284,0.69454217,0.000034694775,0.0001525358,0.16542962,0.0010336834,0.0023810049,0.13024965,0.00028193733,0.0047340533,0.000033633358],"about_ca_topic_score_codex":0.0014703571,"about_ca_topic_score_gemma":0.0017750527,"teacher_disagreement_score":0.0014703571,"about_ca_system_score_codex":0.0002581085,"about_ca_system_score_gemma":0.00036214426,"threshold_uncertainty_score":0.0029466152},"labels":[],"label_agreement":null},{"id":"W1981602644","doi":"10.1002/path.2854","title":"Matrix metalloproteinase 2 attenuates brain tumour growth, while promoting macrophage recruitment and vascular repair","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital de l'Enfant-Jésus; Université Laval","funders":"Canadian Institutes of Health Research","keywords":"MMP2; Cancer research; Astrocytoma; Matrix metalloproteinase; Biology; Extracellular matrix; Pathology; Cell culture; Cell growth; Downregulation and upregulation; Glioma; Cell biology; Medicine; Gene","score_opus":0.02923181450460685,"score_gpt":0.256129578138679,"score_spread":0.22689776363407213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981602644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996311,0.0016511444,0.0009211008,0.00010280831,0.000034517125,0.000022654507,0.00012173493,0.000075312,0.00075961585],"genre_scores_gemma":[0.9928866,0.001706085,0.0015688582,0.000049637667,0.000023292012,0.000048125898,0.00029994643,0.000022090027,0.0033953618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998994,0.000021716054,0.000010053315,0.0000143306615,0.000025714578,0.000028785727],"domain_scores_gemma":[0.99990654,0.0000148873605,0.00002538756,0.000012013915,0.000011611384,0.000029591018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015801859,0.0003736394,0.00030249718,0.00024696926,0.0001107768,0.00031062143,0.00016629737,0.00023257193,0.00087475515],"category_scores_gemma":[0.00015745893,0.000113172304,0.00019147895,0.0001308041,0.00027203996,0.00022627962,0.00012790399,0.00054909853,0.00016870952],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039336307,0.00012620077,0.00011318056,0.000044457996,0.000008201713,0.00004521818,0.000014214956,0.00004785886,0.9968701,0.00008838771,0.00007633476,0.002172525],"study_design_scores_gemma":[0.000058070316,0.0014944437,0.001997325,0.000005744024,0.0000241405,0.00030102947,0.000027677086,0.0006715624,0.9934487,0.0000733387,0.0018946488,0.0000034298282],"about_ca_topic_score_codex":0.0006371123,"about_ca_topic_score_gemma":0.0013878101,"teacher_disagreement_score":0.00087475515,"about_ca_system_score_codex":0.00018570888,"about_ca_system_score_gemma":0.00029110987,"threshold_uncertainty_score":0.0029263496},"labels":[],"label_agreement":null},{"id":"W1982874627","doi":"10.1002/path.2609","title":"Identification of a novel 12p13.3 amplicon in nasopharyngeal carcinoma","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"NF-κB Signaling Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Amplicon; Biology; Nasopharyngeal carcinoma; Carcinogenesis; Cancer research; Gene; Genetics; Molecular biology; Polymerase chain reaction; Internal medicine; Medicine; Radiation therapy","score_opus":0.01863836030146525,"score_gpt":0.27016661929061536,"score_spread":0.2515282589891501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982874627","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976064,0.0003054192,0.0011173213,0.00004536345,0.000008472554,0.000035679124,0.0002474896,0.000057700963,0.00057621225],"genre_scores_gemma":[0.9971259,0.00025280882,0.0012894884,0.00002831582,0.000006359717,0.000034103847,0.00045148854,0.000009813012,0.00080167275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998272,0.000010934172,0.000014192982,0.000049910057,0.00006313882,0.000034596356],"domain_scores_gemma":[0.999853,0.000026776223,0.00005089935,0.0000138446885,0.000023751212,0.00003172035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012714726,0.00028621758,0.0003876411,0.0007246148,0.00029346236,0.00035954223,0.00024231392,0.000398402,0.0012487075],"category_scores_gemma":[0.00030665737,0.00027239005,0.00026183508,0.0004912157,0.0002730224,0.00008691496,0.00037683506,0.00036013022,0.00039791045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038120215,0.000050845614,0.038059972,0.00009006762,0.000038387458,0.012887045,0.00021410335,0.00030313348,0.93619984,0.00010227131,0.00017768405,0.011495417],"study_design_scores_gemma":[0.00006241639,0.0005920117,0.70936316,0.000026698273,0.00023285352,0.051606324,0.00028999808,0.0027703603,0.22776033,0.00032994154,0.0069360575,0.000029896059],"about_ca_topic_score_codex":0.0015285115,"about_ca_topic_score_gemma":0.0019848987,"teacher_disagreement_score":0.0015285115,"about_ca_system_score_codex":0.00032380025,"about_ca_system_score_gemma":0.00022762579,"threshold_uncertainty_score":0.0041773915},"labels":[],"label_agreement":null},{"id":"W1982999386","doi":"10.1002/path.1040","title":"Expression of Bcl‐x, Bcl‐2, Bax, and Bak in endarterectomy and atherectomy specimens","year":2002,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"Royal University Hospital Foundation","keywords":"TUNEL assay; Apoptosis; In Situ Nick-End Labeling; Western blot; Pathology; Immunohistochemistry; Biology; Molecular biology; Cancer research; Medicine; Gene","score_opus":0.029228605151336746,"score_gpt":0.2943347690604457,"score_spread":0.26510616390910896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982999386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976158,0.00094558607,0.001028472,0.0000060966877,0.00000652557,0.000013737238,0.00008132104,0.000014055445,0.00028844536],"genre_scores_gemma":[0.99641716,0.0006515797,0.0015950913,0.000014504551,0.000009458637,0.00002840094,0.0005851514,0.0000064065066,0.000692177],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99979347,0.000023473192,0.00003058432,0.00004413211,0.00007063344,0.000037662758],"domain_scores_gemma":[0.9996953,0.000069889335,0.0000615711,0.000041540683,0.00006316523,0.00006854593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003500164,0.00019398367,0.00020233325,0.0009887326,0.0002390328,0.0002160283,0.00014691519,0.0002562482,0.000737359],"category_scores_gemma":[0.00046398898,0.00017687226,0.0001473591,0.00033726598,0.00030020563,0.00021365723,0.0002385631,0.00022404522,0.00027025206],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012961663,0.00008025266,0.046309333,0.000110925415,0.000029706178,0.00093093666,0.00028375763,0.00005944605,0.9460939,0.00006466422,0.000034722158,0.0047061504],"study_design_scores_gemma":[0.000075108655,0.0020454887,0.7687736,0.000026976348,0.00016057293,0.009195045,0.00060598494,0.0006923846,0.21584786,0.00014029308,0.0024133916,0.000023353343],"about_ca_topic_score_codex":0.00041659255,"about_ca_topic_score_gemma":0.0007818495,"teacher_disagreement_score":0.0009887326,"about_ca_system_score_codex":0.00012993043,"about_ca_system_score_gemma":0.00014650056,"threshold_uncertainty_score":0.0024667382},"labels":[],"label_agreement":null},{"id":"W1987854357","doi":"10.1002/path.2178","title":"Decreased expression level of SH2 domain‐containing protein tyrosine phosphatase‐1 (Shp1) is associated with progression of chronic myeloid leukaemia","year":2007,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chronic Myeloid Leukemia Treatments","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Cancer Institute; National Institutes of Health","keywords":"Protein tyrosine phosphatase; Tyrosine; Chronic myeloid leukaemia; SH2 domain; Cancer research; Myeloid; Biology; Medicine; Chemistry; Biochemistry","score_opus":0.03296901226954663,"score_gpt":0.3064877813777634,"score_spread":0.27351876910821676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987854357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817693,0.0009286943,0.0002875167,0.000034960955,0.0000051687402,0.0000041499925,0.0002337006,0.00001363094,0.0003153552],"genre_scores_gemma":[0.9984724,0.00031098683,0.00017018098,0.000014797887,0.000009087287,0.0000075670937,0.0003322266,0.000002867011,0.000679909],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999379,0.000008605779,0.000004186477,0.000017408358,0.000016080823,0.000015789326],"domain_scores_gemma":[0.9997795,0.00003109264,0.00009629897,0.000010682125,0.000021047907,0.00006126876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009375779,0.00016163023,0.00015973195,0.00047755198,0.00014229244,0.00023851806,0.000088593566,0.0002564122,0.0022405633],"category_scores_gemma":[0.00019521143,0.00010412056,0.00008132723,0.00026844087,0.00019596616,0.00010289783,0.00013655634,0.00039500542,0.00033440703],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015713805,0.00007149747,0.08059224,0.00009551574,0.00003796626,0.00067357294,0.00009559191,0.00006968634,0.9090453,0.000105307365,0.00032535486,0.00731665],"study_design_scores_gemma":[0.00005576276,0.0005430196,0.89969397,0.000010182327,0.00004253696,0.0045508295,0.00008758804,0.00051855337,0.09144306,0.0001970682,0.002848279,0.0000090117455],"about_ca_topic_score_codex":0.00030772225,"about_ca_topic_score_gemma":0.00022021924,"teacher_disagreement_score":0.0022405633,"about_ca_system_score_codex":0.0001036768,"about_ca_system_score_gemma":0.00007175912,"threshold_uncertainty_score":0.007495463},"labels":[],"label_agreement":null},{"id":"W1989079400","doi":"10.1002/path.1895","title":"Characterization of tumour‐infiltrating lymphocytes and apoptosis in colitis‐associated neoplasia: comparison with sporadic colorectal cancer","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Microsatellite instability; Colorectal cancer; Colitis; Medicine; Granzyme B; Ulcerative colitis; Cancer; Cancer research; Pathology; Internal medicine; CD8; Immunology; Biology; Immune system; Microsatellite; Disease","score_opus":0.013255897443166253,"score_gpt":0.26602701181408916,"score_spread":0.2527711143709229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989079400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995018,0.00034352153,0.000051646723,0.0000026249938,8.5570287e-7,0.0000018486003,0.000013809687,0.0000014865087,0.00008249149],"genre_scores_gemma":[0.99960595,0.00012902815,0.00009756847,0.000004294888,0.000004062822,0.0000040248433,0.00006740624,8.119346e-7,0.00008702475],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998802,0.000025276731,0.000017188906,0.000024461226,0.000026897986,0.000025988676],"domain_scores_gemma":[0.9995925,0.000105124665,0.00013645462,0.000022019654,0.000041056293,0.000102855585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020278885,0.00011738966,0.00019349156,0.0010565872,0.0001605824,0.00029268558,0.00008808635,0.00021231652,0.00075354165],"category_scores_gemma":[0.0008174186,0.00008898941,0.000106623396,0.00046495814,0.0001985004,0.00015426082,0.0002621321,0.000110382316,0.00013003864],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002541964,0.00006196452,0.9012261,0.000101702506,0.00006236189,0.0010584418,0.0003003313,0.0001084371,0.08571889,0.000031741172,0.000041169074,0.0087470105],"study_design_scores_gemma":[0.000015467216,0.00048635775,0.992733,0.000005722024,0.00002551879,0.0030676625,0.0001617952,0.00022105945,0.0028362747,0.000022717628,0.00042114724,0.0000031843276],"about_ca_topic_score_codex":0.00046872578,"about_ca_topic_score_gemma":0.0006050798,"teacher_disagreement_score":0.0010565872,"about_ca_system_score_codex":0.00015647693,"about_ca_system_score_gemma":0.000072829396,"threshold_uncertainty_score":0.0025208592},"labels":[],"label_agreement":null},{"id":"W1993564924","doi":"10.1002/path.1553","title":"Cleavage of AL amyloid proteins and AL amyloid deposits by cathepsins B, K, and L","year":2004,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Amyloidosis: Diagnosis, Treatment, Outcomes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Deutsche Forschungsgemeinschaft","keywords":"Proteases; Cathepsin B; Cathepsin; Amyloid (mycology); Proteolysis; Chemistry; Extracellular; P3 peptide; Biochemistry; Amyloid precursor protein; Molecular biology; Biology; Pathology; Alzheimer's disease; Enzyme; Medicine","score_opus":0.007715704543328604,"score_gpt":0.2513720381191725,"score_spread":0.24365633357584393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993564924","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99418074,0.0034091398,0.0013972148,0.000052301224,0.0000069902885,0.000016122012,0.000030491996,0.000016718708,0.00089016306],"genre_scores_gemma":[0.99711347,0.0007165289,0.001123615,0.000031430336,0.000005688485,0.000010998596,0.0000737215,0.0000044150884,0.0009201514],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99976236,0.000070004564,0.000021304524,0.000043055286,0.00005080081,0.000052507752],"domain_scores_gemma":[0.9997869,0.0000521853,0.00006814443,0.000019952815,0.000032139946,0.00004061584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032188548,0.00024556185,0.00026307473,0.00018883814,0.00017911641,0.00032978374,0.00008352805,0.00034789077,0.00083965913],"category_scores_gemma":[0.0005707317,0.00012449086,0.0002558615,0.00011642083,0.00033449507,0.00025914563,0.00024213355,0.00025608405,0.00017507188],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049283216,0.00006930122,0.003769902,0.000109628665,0.000022357366,0.0005422628,0.00006995248,0.000058013,0.98784965,0.00014164884,0.00004551834,0.006828927],"study_design_scores_gemma":[0.00006765281,0.0015039062,0.03952684,0.000019219804,0.00004707719,0.007040155,0.0001504384,0.00094497204,0.9478708,0.00023799189,0.0025809028,0.00001001433],"about_ca_topic_score_codex":0.00043688397,"about_ca_topic_score_gemma":0.00033023552,"teacher_disagreement_score":0.00083965913,"about_ca_system_score_codex":0.00028843203,"about_ca_system_score_gemma":0.00020442094,"threshold_uncertainty_score":0.0028089285},"labels":[],"label_agreement":null},{"id":"W1996626530","doi":"10.1002/path.4100","title":"Autophagy in clear cell ovarian cancer, a potential marker for hypoxia and poor prognosis?<sup>#</sup>","year":2012,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; CancerCare Manitoba","funders":"","keywords":"Autophagy; Ovarian cancer; Hypoxia (environmental); Cancer research; Biomarker; Oncology; Biology; Pathological; Cell; Internal medicine; Cancer; Medicine; Apoptosis; Chemistry; Genetics","score_opus":0.015489800777421545,"score_gpt":0.2714940157533138,"score_spread":0.2560042149758922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996626530","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012061526,0.011983286,0.00055500155,0.9477626,0.020044979,0.000060436792,0.00010535208,0.00008932524,0.0073375027],"genre_scores_gemma":[0.13822412,0.022564633,0.0023917267,0.6023494,0.21320176,0.00017954657,0.00020346376,0.00006605488,0.020819262],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992865,0.00027245452,0.00009814959,0.00009018231,0.00016501281,0.000087746026],"domain_scores_gemma":[0.9984804,0.0006992343,0.00016611739,0.000081208695,0.00037233188,0.00020071704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085663336,0.00054526987,0.0010473317,0.0006830593,0.0010012549,0.0011183514,0.00074753124,0.012074722,0.00244065],"category_scores_gemma":[0.0058508925,0.00037303238,0.00064426096,0.00054094766,0.0011911693,0.0016769592,0.0004025213,0.0067790784,0.0020846534],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005347107,0.00018560901,0.018485526,0.00047281166,0.000065046,0.09391515,0.00029766912,0.00030378482,0.0032270625,0.0028613827,0.8011592,0.07849211],"study_design_scores_gemma":[0.0005771777,0.00070998975,0.032174736,0.0010363335,0.00022514364,0.36437345,0.00094279996,0.004721433,0.002832291,0.015304206,0.5769345,0.00016790333],"about_ca_topic_score_codex":0.0013121801,"about_ca_topic_score_gemma":0.0022021763,"teacher_disagreement_score":0.012074722,"about_ca_system_score_codex":0.0017524468,"about_ca_system_score_gemma":0.00053954415,"threshold_uncertainty_score":0.012714982},"labels":[],"label_agreement":null},{"id":"W1997484646","doi":"10.1002/path.1045","title":"Mitotic counts provide additional prognostic information in grade II mammary carcinoma","year":2002,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Breast Cancer Treatment Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"","keywords":"Grading (engineering); Medicine; Oncology; Internal medicine; Cohort; Breast cancer; Mammary gland; Cancer; Immunohistochemistry; Pathology; Biology","score_opus":0.01116325346964326,"score_gpt":0.21658576177924213,"score_spread":0.20542250830959888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997484646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904625,0.0062890584,0.0006686459,0.00012013156,0.000024469131,0.000015148814,0.00018363248,0.000011621512,0.0022248614],"genre_scores_gemma":[0.9983815,0.00077632983,0.00030353162,0.000022626566,0.000018869809,0.0000031700695,0.00013195824,0.000001486031,0.0003605452],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99980384,0.000094592906,0.000022944221,0.000014741353,0.00003536024,0.000028471828],"domain_scores_gemma":[0.9990355,0.0004004475,0.0002437521,0.00007090168,0.00014263608,0.00010674201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047070012,0.00022948397,0.00024066099,0.0009819929,0.00012146843,0.0005136441,0.00011585823,0.0002371715,0.0011615737],"category_scores_gemma":[0.002614374,0.00009978244,0.00012892904,0.000503727,0.00016411503,0.00021265265,0.0001641468,0.00026670587,0.0002715976],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032759127,0.00006158261,0.8985565,0.00017095989,0.00007229901,0.00038445418,0.00020720463,0.00040296811,0.029438395,0.00018234616,0.00027469482,0.06697285],"study_design_scores_gemma":[0.000029040404,0.00082665443,0.9847761,0.00003650046,0.0001155147,0.001572402,0.00012377987,0.0007208121,0.00901515,0.00041040665,0.0023617228,0.000012044452],"about_ca_topic_score_codex":0.0007589296,"about_ca_topic_score_gemma":0.0016621083,"teacher_disagreement_score":0.0011615737,"about_ca_system_score_codex":0.00015789208,"about_ca_system_score_gemma":0.000108204535,"threshold_uncertainty_score":0.0038858652},"labels":[],"label_agreement":null},{"id":"W1997846402","doi":"10.1002/path.1798","title":"Distinct endoplasmic reticulum stress responses are triggered during human liver transplantation","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Endoplasmic reticulum; Unfolded protein response; Transplantation; Cell biology; CHOP; Biology; Reperfusion injury; Immunology; Chemistry; Ischemia; Medicine; Internal medicine","score_opus":0.00948980199284949,"score_gpt":0.2519375265786937,"score_spread":0.24244772458584424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997846402","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99651563,0.0013085135,0.0012624254,0.000027599808,0.00002566733,0.00003789531,0.00015167941,0.00005145928,0.00061897683],"genre_scores_gemma":[0.9977849,0.0006903657,0.00042255613,0.00004233897,0.000019457128,0.000048747705,0.00043802304,0.000008681757,0.00054491614],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997639,0.000046242294,0.000022106171,0.00004946056,0.000057809262,0.000060596474],"domain_scores_gemma":[0.99985635,0.00002241285,0.000056865916,0.000018269997,0.000015196159,0.000031007316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032618878,0.0003149222,0.0005064322,0.00036346223,0.00017625559,0.0004219229,0.00009671441,0.00028973818,0.0014376582],"category_scores_gemma":[0.00025417362,0.00014860676,0.00030723357,0.00035453503,0.00028359875,0.00018143124,0.00028538785,0.00042482713,0.00045304422],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025431137,0.000084117506,0.0029427088,0.00011641186,0.000015529811,0.00059246825,0.00013322713,0.000072544666,0.9904512,0.00006827463,0.00006198639,0.0029181936],"study_design_scores_gemma":[0.00011438818,0.0037526963,0.25824043,0.00002515796,0.00010757629,0.004692598,0.00040582317,0.0011980779,0.72855055,0.00023976302,0.0026274342,0.00004546504],"about_ca_topic_score_codex":0.0001125654,"about_ca_topic_score_gemma":0.00014527682,"teacher_disagreement_score":0.0014376582,"about_ca_system_score_codex":0.000222571,"about_ca_system_score_gemma":0.00012427809,"threshold_uncertainty_score":0.004809439},"labels":[],"label_agreement":null},{"id":"W1998901985","doi":"10.1002/path.2927","title":"Identification of abrogated pathways in fallopian tube epithelium from <i>BRCA1</i> mutation carriers","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"University Health Network","keywords":"Serous fluid; Fallopian tube; Epithelium; Carcinogenesis; Biology; Heterozygote advantage; Pathology; Ovarian cancer; Immunohistochemistry; Cancer research; Cancer; Genetics; Gene; Medicine; Immunology; Allele","score_opus":0.02763567744900417,"score_gpt":0.2611602502844471,"score_spread":0.23352457283544295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998901985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99837375,0.0003971373,0.0005759625,0.000031129806,0.0000052751634,0.000008446441,0.00026108802,0.00002408183,0.00032313232],"genre_scores_gemma":[0.99690694,0.00041500758,0.0012830277,0.000043231998,0.0000028163688,0.000025564694,0.0005343266,0.000010951337,0.0007781575],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99986196,0.000018326813,0.000009675206,0.000039541545,0.000037122223,0.00003340224],"domain_scores_gemma":[0.99988616,0.000030693725,0.00003598189,0.0000110903975,0.000009890538,0.000026122767],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011856865,0.00016145433,0.00022001546,0.00048382604,0.00018721102,0.00024995714,0.00011369844,0.00019088159,0.0012172769],"category_scores_gemma":[0.00024935778,0.00009849947,0.0001945692,0.00022482799,0.00024157227,0.00010257375,0.00016090643,0.00019651139,0.000163204],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018356688,0.000011241821,0.0035634662,0.00002719049,0.000005578543,0.000120276054,0.00003934678,0.000028842805,0.993982,0.000035781777,0.000021845879,0.0019808288],"study_design_scores_gemma":[0.0000133011845,0.00049742823,0.3821546,0.000015103929,0.000055792607,0.0022623339,0.00025397987,0.0007666654,0.6114043,0.00016364115,0.0024027957,0.000010044752],"about_ca_topic_score_codex":0.00075070624,"about_ca_topic_score_gemma":0.0008735678,"teacher_disagreement_score":0.0012172769,"about_ca_system_score_codex":0.00016171673,"about_ca_system_score_gemma":0.00017073192,"threshold_uncertainty_score":0.0040721893},"labels":[],"label_agreement":null},{"id":"W1999032811","doi":"10.1002/path.2704","title":"Q‐FISH analysis of telomere and chromosome instability in the oesophagus with and without squamous cell carcinoma <i>in situ</i>","year":2010,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Terry Fox Research Institute","funders":"Ministry of Education, Culture, Sports, Science and Technology","keywords":"Telomere; Biology; Chromosome instability; Fluorescence in situ hybridization; In situ hybridization; Epithelium; Pathology; Basal (medicine); Telomerase; Carcinogenesis; Carcinoma in situ; Genome instability; Stem cell; Chromosome; Molecular biology; Carcinoma; Cell biology; Genetics; Cancer; Medicine; Endocrinology; DNA damage; Gene; DNA","score_opus":0.010027712894565798,"score_gpt":0.24529094413362387,"score_spread":0.23526323123905807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999032811","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986129,0.00027024248,0.00056400587,0.000010342474,0.00000347026,0.000005835963,0.000056636338,0.000010097198,0.0004663708],"genre_scores_gemma":[0.9985568,0.00022439002,0.00047322927,0.000015691254,0.0000019468382,0.000009745635,0.00016694727,0.000004824108,0.00054644607],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99990654,0.000014086981,0.000012335442,0.000021283062,0.00002335738,0.000022408056],"domain_scores_gemma":[0.9998869,0.000028598972,0.000026685506,0.000015862835,0.000019252788,0.000022610147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022503517,0.00016789207,0.00017336023,0.0005518784,0.00013978168,0.00018485823,0.00010885528,0.00022720773,0.0012769763],"category_scores_gemma":[0.00026342136,0.0001431251,0.00015432555,0.00023231286,0.00023394125,0.00013741542,0.00015079917,0.00014254,0.00016593875],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002682023,0.000015868252,0.008749275,0.00003135449,0.00001646637,0.00047339962,0.00006430769,0.00003173446,0.9891072,0.000055047367,0.000016198272,0.0011709671],"study_design_scores_gemma":[0.0000633554,0.0011465373,0.59995943,0.000015770376,0.00013425904,0.010649986,0.0004901486,0.0013918782,0.38386074,0.00018147429,0.0020864836,0.000020006893],"about_ca_topic_score_codex":0.0011373856,"about_ca_topic_score_gemma":0.0011484897,"teacher_disagreement_score":0.0012769763,"about_ca_system_score_codex":0.00020005771,"about_ca_system_score_gemma":0.0001093943,"threshold_uncertainty_score":0.004271865},"labels":[],"label_agreement":null},{"id":"W2001412659","doi":"10.1002/path.1674","title":"Granulocyte‐derived elastase and gelatinase B are required for dermal–epidermal separation induced by autoantibodies from patients with epidermolysis bullosa acquisita and bullous pemphigoid","year":2004,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Autoimmune Bullous Skin Diseases","field":"Medicine","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BioPhage Pharma (Canada)","funders":"","keywords":"Epidermolysis bullosa acquisita; Bullous pemphigoid; Autoantibody; Elastase; Epidermolysis bullosa; Immunology; Pemphigoid; Neutrophil elastase; Pathology; Anchoring fibrils; Medicine; Chemistry; Antibody; Basement membrane; Inflammation; Biochemistry","score_opus":0.011772465877496315,"score_gpt":0.26232479943428266,"score_spread":0.25055233355678636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001412659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991146,0.0004899921,0.00013844528,0.00002112447,0.000004780301,0.000009367904,0.00003413896,0.000008915708,0.0001786965],"genre_scores_gemma":[0.9995332,0.000115476316,0.00013310816,0.00002611302,0.0000060416005,0.000008173903,0.00007787288,0.0000023403957,0.000097603246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996582,0.000083458144,0.000050531515,0.00008380349,0.000058204365,0.00006581569],"domain_scores_gemma":[0.99973696,0.00005788113,0.00009543668,0.000019471932,0.00001856505,0.00007157993],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023996651,0.000488677,0.00039683256,0.00035739935,0.00019077334,0.0003012105,0.00017154339,0.0006065065,0.0010962344],"category_scores_gemma":[0.00046593245,0.0002736799,0.00040603473,0.0001539954,0.0002701091,0.00023239705,0.00023496887,0.0005833641,0.00022733754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021051145,0.00020047023,0.040495336,0.000109532375,0.00009660411,0.0050468715,0.00025361415,0.000067370216,0.948112,0.000064393214,0.00007978315,0.0033688804],"study_design_scores_gemma":[0.0002762925,0.0016976714,0.8472862,0.0000169219,0.00016968239,0.025661793,0.00023706771,0.0006767853,0.12266431,0.0000796828,0.0012194765,0.000014050051],"about_ca_topic_score_codex":0.00037524538,"about_ca_topic_score_gemma":0.00025174374,"teacher_disagreement_score":0.0010962344,"about_ca_system_score_codex":0.00019072513,"about_ca_system_score_gemma":0.00009036523,"threshold_uncertainty_score":0.003667295},"labels":[],"label_agreement":null},{"id":"W2001590535","doi":"10.1002/path.2271","title":"Nod‐like proteins in inflammation and disease","year":2007,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Howard Hughes Medical Institute","keywords":"NOD1; NOD2; Innate immune system; Inflammation; Biology; Pattern recognition receptor; Nod; Disease; Immunity; Immunology; Immune system; Signal transduction; Neuroscience; Receptor; Intracellular; Cell biology; Medicine; Genetics; Pathology; Gene","score_opus":0.01894607225181815,"score_gpt":0.300354086026735,"score_spread":0.28140801377491687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001590535","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014298268,0.997789,0.00013436322,0.0003047311,0.00031402372,0.0000042681854,0.000007741418,0.000008034094,0.001294857],"genre_scores_gemma":[0.001084171,0.9965495,0.00021373457,0.00026478566,0.0003697649,0.000008130803,0.000028979313,0.0000012583479,0.0014797628],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998246,0.00003140206,0.000025653286,0.000028727822,0.00007038093,0.000019199575],"domain_scores_gemma":[0.99984264,0.000047723996,0.000023222958,0.0000067860237,0.00004345792,0.00003609088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000646821,0.00084702607,0.0012789633,0.0012269971,0.00029704202,0.0006654857,0.00087378843,0.0013241689,0.0033044664],"category_scores_gemma":[0.0003990219,0.00022252856,0.00026519716,0.0014500342,0.00056883175,0.001087666,0.00075360056,0.0015906533,0.003706818],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019891514,0.00009040895,0.0003576432,0.008015038,0.00007069632,0.0008534576,0.00009497719,0.00035577492,0.0045055365,0.00642438,0.044944003,0.9340891],"study_design_scores_gemma":[0.000033463715,0.000069919115,0.0009887635,0.0013861815,0.000028052686,0.0027409736,0.000050177146,0.00005532218,0.0005875059,0.0032834283,0.9907629,0.00001329458],"about_ca_topic_score_codex":0.00057724054,"about_ca_topic_score_gemma":0.0008108914,"teacher_disagreement_score":0.0033044664,"about_ca_system_score_codex":0.00065026165,"about_ca_system_score_gemma":0.000897681,"threshold_uncertainty_score":0.011054516},"labels":[],"label_agreement":null},{"id":"W2001994418","doi":"10.1002/path.4047","title":"From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":195,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Simon Fraser University; Ontario Institute for Cancer Research; BC Cancer Agency; University of British Columbia","funders":"National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Prostate cancer; Fusion gene; Chromothripsis; Massive parallel sequencing; Prostate; Molecular pathology; Biology; Cancer; Disease; Pathology; Bioinformatics; Gene; Medicine; DNA sequencing; Genetics; Genome instability; DNA damage","score_opus":0.030100180437076865,"score_gpt":0.3441477293200317,"score_spread":0.31404754888295483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001994418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98487234,0.0046359375,0.008236551,0.00059831014,0.000024235846,0.0000128474385,0.00018500884,0.000059833234,0.001374911],"genre_scores_gemma":[0.99574846,0.0013063718,0.0023444258,0.00010929462,0.00002402414,0.0000056475687,0.00010776714,0.000010583882,0.00034350282],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987066,0.000037774593,0.000009269925,0.000029167486,0.00003917644,0.000013905245],"domain_scores_gemma":[0.9997063,0.000096704855,0.00008231911,0.00004469065,0.000025594269,0.000044302502],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000411008,0.00020582207,0.00020831109,0.00060561806,0.00024224554,0.00072807085,0.00024272782,0.0002821734,0.0006301771],"category_scores_gemma":[0.0009506236,0.000197967,0.00016356932,0.00042973232,0.0008524354,0.00053713785,0.00042538307,0.00043260056,0.00012472946],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007663538,0.00007340256,0.3391357,0.0003571467,0.00013488442,0.003137861,0.0006884136,0.007492962,0.559076,0.010730778,0.00054834946,0.07785811],"study_design_scores_gemma":[0.000028246179,0.0005592998,0.82275164,0.000119359545,0.0001766796,0.017226873,0.0010475965,0.017115397,0.08936102,0.040485337,0.011042771,0.000085730586],"about_ca_topic_score_codex":0.00061860227,"about_ca_topic_score_gemma":0.0011332618,"teacher_disagreement_score":0.00072807085,"about_ca_system_score_codex":0.00030909744,"about_ca_system_score_gemma":0.00034411444,"threshold_uncertainty_score":0.0022426248},"labels":[],"label_agreement":null},{"id":"W2002169296","doi":"10.1002/path.2571","title":"Reduced expression and novel splice variants of <i>ING4</i> in human gastric adenocarcinoma","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; National Natural Science Foundation of China","keywords":"Biology; Adenocarcinoma; Cancer research; Alternative splicing; Messenger RNA; Gene; Microarray analysis techniques; Gene expression; Molecular biology; Cancer; Genetics","score_opus":0.015079332708159405,"score_gpt":0.2708170625806389,"score_spread":0.2557377298724795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002169296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988298,0.000354242,0.00047698006,0.00001971537,0.0000033502752,0.000003510201,0.0001008798,0.000017070728,0.00019447741],"genre_scores_gemma":[0.9983529,0.00020270921,0.0005808156,0.000021676926,0.000004588985,0.0000063237644,0.00036596248,0.000008045337,0.0004570175],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999317,0.000010232532,0.000006763407,0.000018082425,0.000018304301,0.000014833909],"domain_scores_gemma":[0.9998969,0.000014779325,0.000041342417,0.00001328369,0.000011198701,0.000022533393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083178085,0.00017423157,0.00016697503,0.0003196875,0.00012189402,0.00020908256,0.00010796541,0.0001965843,0.0006081168],"category_scores_gemma":[0.00014367519,0.0001332748,0.00017770192,0.00014586133,0.00018975884,0.0000693602,0.00011899646,0.00019308132,0.00020931511],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024711434,0.000013052005,0.005517744,0.000018761648,0.000013215182,0.00042090524,0.000029044344,0.000051549418,0.99217063,0.00005145541,0.00003082142,0.0014357455],"study_design_scores_gemma":[0.000042156076,0.000994919,0.25678268,0.000010761108,0.00013807479,0.011562613,0.00025534947,0.0014185995,0.7250596,0.0002866985,0.0034267027,0.000021824177],"about_ca_topic_score_codex":0.0005875732,"about_ca_topic_score_gemma":0.00060089224,"teacher_disagreement_score":0.0006081168,"about_ca_system_score_codex":0.00013567129,"about_ca_system_score_gemma":0.00010224816,"threshold_uncertainty_score":0.0020343661},"labels":[],"label_agreement":null},{"id":"W2007788558","doi":"10.1002/path.2817","title":"Alcoholics show reduced telomere length in the oesophagus","year":2010,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Terry Fox Research Institute","funders":"Japan Society for the Promotion of Science","keywords":"Telomere; Telomerase; Carcinogenesis; Genome instability; Biology; Chromosome instability; Pathological; Basal (medicine); Inflammation; Pathology; Chromosome; Cancer research; Genetics; Medicine; Cancer; Endocrinology; Immunology; DNA; DNA damage; Gene","score_opus":0.022381607639168438,"score_gpt":0.2985036445018466,"score_spread":0.2761220368626781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007788558","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99918896,0.00039885115,0.00008850548,0.000013040176,0.0000043386594,0.0000015328367,0.00008417263,0.0000070103897,0.00021358229],"genre_scores_gemma":[0.99880636,0.00032129302,0.0001359282,0.000013161182,0.000003492708,0.000002736041,0.00015838812,0.0000031241595,0.0005555391],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99994946,0.0000074818527,0.000007261009,0.000011601954,0.000013720125,0.000010461719],"domain_scores_gemma":[0.999795,0.000024249597,0.00008434651,0.000020097124,0.000030243189,0.00004604592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000112348884,0.00015788304,0.00018259438,0.0006598652,0.00018000157,0.0002072413,0.00005621546,0.00016026806,0.0019370634],"category_scores_gemma":[0.00025170727,0.00015255391,0.00012624059,0.00030890948,0.0001531398,0.00014911321,0.00023362807,0.00017937996,0.00028569574],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002713081,0.00009950975,0.3486136,0.00016666799,0.0001023844,0.0017562993,0.0008432226,0.00007273662,0.62848794,0.00011956338,0.000241272,0.016783744],"study_design_scores_gemma":[0.000013601302,0.00031055423,0.9858045,0.000009156633,0.000035050114,0.0022366534,0.00036751374,0.000091212954,0.010404525,0.00008740457,0.0006341822,0.000005623362],"about_ca_topic_score_codex":0.0009280488,"about_ca_topic_score_gemma":0.0009752654,"teacher_disagreement_score":0.0019370634,"about_ca_system_score_codex":0.000078881276,"about_ca_system_score_gemma":0.000052939813,"threshold_uncertainty_score":0.006480098},"labels":[],"label_agreement":null},{"id":"W2010399001","doi":"10.1002/path.2250","title":"Over‐expression of <i>S100A2</i> in pancreatic cancer correlates with progression and poor prognosis","year":2007,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"S100 Proteins and Annexins","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Pancreatic Intraepithelial Neoplasia; Pathology; Carcinogenesis; Pancreatic cancer; Immunohistochemistry; Medicine; Microdissection; CA19-9; Pancreatitis; Cancer; Cancer research; Biology; Pancreatic ductal adenocarcinoma; Gastroenterology; Internal medicine; Gene","score_opus":0.006577482324570504,"score_gpt":0.2681926443747745,"score_spread":0.261615162050204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010399001","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977501,0.0010731709,0.00036014008,0.000045678054,0.0000059598683,0.0000040179075,0.00011421033,0.000024333345,0.0006224126],"genre_scores_gemma":[0.998782,0.00037001603,0.00020339405,0.000018324852,0.000008214794,0.000005322791,0.0002412422,0.000004326697,0.00036714636],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9999,0.000013520536,0.00000925525,0.00003034804,0.000028463408,0.000018382545],"domain_scores_gemma":[0.9996582,0.00005260929,0.00014925588,0.00002442731,0.00004989534,0.00006556693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023327103,0.00018854937,0.00018162285,0.0005811011,0.0001542042,0.0005014352,0.00011996271,0.00025710987,0.0011406107],"category_scores_gemma":[0.00039117623,0.00012475635,0.00015408559,0.00045066857,0.00026920106,0.00017546059,0.00020980866,0.00036548442,0.000306021],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011451748,0.000046276327,0.6358538,0.000074525444,0.00009519604,0.0007395794,0.00012248197,0.00016877223,0.34900773,0.00007666656,0.00037782444,0.01229186],"study_design_scores_gemma":[0.000006414032,0.00012654116,0.9776937,0.000005884017,0.000035036916,0.001504907,0.000119554505,0.00040272495,0.01884544,0.00006790069,0.0011868853,0.0000050729495],"about_ca_topic_score_codex":0.0006453774,"about_ca_topic_score_gemma":0.0005546303,"teacher_disagreement_score":0.0011406107,"about_ca_system_score_codex":0.00017953689,"about_ca_system_score_gemma":0.00010626834,"threshold_uncertainty_score":0.0038157701},"labels":[],"label_agreement":null},{"id":"W2010975155","doi":"10.1002/path.2025","title":"Ultraviolet‐inactivated human cytomegalovirus induces placental syncytiotrophoblast apoptosis in a Toll‐like receptor‐2 and tumour necrosis factor‐α dependent manner","year":2006,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pregnancy and preeclampsia studies","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Tumor necrosis factor alpha; Human cytomegalovirus; Syncytiotrophoblast; Trophoblast; Inflammation; Biology; TLR2; Apoptosis; Immunology; Toll-like receptor; Cytotrophoblast; Cancer research; Virology; TLR4; Placenta; Virus; Innate immune system; Immune system; Pregnancy; Fetus","score_opus":0.015611020293225017,"score_gpt":0.25954883946916146,"score_spread":0.24393781917593643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010975155","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960044,0.0020908746,0.00083097094,0.000030555268,0.000012593633,0.000011407961,0.00003956258,0.000016232829,0.00096339453],"genre_scores_gemma":[0.9963509,0.0017864036,0.0005947879,0.00002745761,0.000008548445,0.000012586449,0.000107827815,0.0000031485483,0.0011082849],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989307,0.000035123518,0.0000075493545,0.000015589918,0.00002648053,0.000022212625],"domain_scores_gemma":[0.99988043,0.000048770533,0.000026109468,0.000022490514,0.000008261247,0.00001391062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013700669,0.00016325162,0.00011291371,0.00016153193,0.00009046248,0.00015602981,0.00008219217,0.00015462028,0.0007139443],"category_scores_gemma":[0.00020331354,0.00012661262,0.00013283505,0.00008732461,0.00020061452,0.00010229907,0.000119342825,0.00027325336,0.00015644277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034196058,0.000043828175,0.0011845854,0.000048068538,0.000009179502,0.00032132497,0.00006415624,0.000059443737,0.9945702,0.000095700416,0.000051145955,0.003210441],"study_design_scores_gemma":[0.000065599015,0.0017133484,0.03567125,0.000016565904,0.000027397447,0.0029270204,0.00015114811,0.00083531806,0.95491725,0.00023384059,0.0034355794,0.000005682931],"about_ca_topic_score_codex":0.0003076976,"about_ca_topic_score_gemma":0.00034035553,"teacher_disagreement_score":0.0007139443,"about_ca_system_score_codex":0.00019911572,"about_ca_system_score_gemma":0.00012417491,"threshold_uncertainty_score":0.002388358},"labels":[],"label_agreement":null},{"id":"W2017999136","doi":"10.1002/path.2866","title":"<i>In situ</i> immune response after neoadjuvant chemotherapy for breast cancer predicts survival","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":223,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ligue Contre le Cancer; Institut National de la Santé et de la Recherche Médicale; CNIB; Fondation de France; Association pour la Recherche sur le Cancer","keywords":"Breast cancer; Oncology; Chemotherapy; Medicine; Immune system; Internal medicine; Neoadjuvant therapy; Cancer; In situ; Immunology","score_opus":0.019973371361201572,"score_gpt":0.2847484247620868,"score_spread":0.2647750534008852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017999136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99904007,0.00023114326,0.00016349001,0.000037185855,0.0000061674536,0.0000040420923,0.000074424956,0.000006554297,0.00043681485],"genre_scores_gemma":[0.99956614,0.00007449781,0.00008253299,0.000014367287,0.00001111628,0.0000043820796,0.00013583532,0.000001274937,0.00010991734],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99988484,0.000041748943,0.000014772425,0.000017154267,0.000019297142,0.000022124495],"domain_scores_gemma":[0.9990687,0.0003513134,0.00036808095,0.000050111714,0.00006240745,0.0000994094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048354478,0.000134949,0.00016651442,0.00026522827,0.00009376163,0.00025490264,0.00008855961,0.0001569843,0.001237226],"category_scores_gemma":[0.0016172657,0.00004957629,0.00014434296,0.00017564507,0.00017126084,0.00013055762,0.00013262623,0.00026396062,0.00021069674],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052501034,0.000037993355,0.98961496,0.000014789374,0.000029039069,0.00006623449,0.000020758373,0.00023305537,0.00284417,0.000014345867,0.00014476823,0.0064549274],"study_design_scores_gemma":[0.000008081928,0.00046158215,0.9959006,0.000006871247,0.000046039753,0.0006087518,0.000053117925,0.0011558277,0.0012473247,0.00005286514,0.00045625723,0.0000028360091],"about_ca_topic_score_codex":0.00032280406,"about_ca_topic_score_gemma":0.00057922513,"teacher_disagreement_score":0.001237226,"about_ca_system_score_codex":0.00010762241,"about_ca_system_score_gemma":0.0001155763,"threshold_uncertainty_score":0.004138887},"labels":[],"label_agreement":null},{"id":"W2021466588","doi":"10.1002/path.2559","title":"<i>PTEN</i> genomic deletion is associated with p‐Akt and AR signalling in poorer outcome, hormone refractory prostate cancer","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"PI3K/AKT/mTOR signaling in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":210,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; McGill University Health Centre; Université de Montréal; University of Calgary; McGill University; Centre Hospitalier de l’Université de Montréal; Queen's University","funders":"","keywords":"PTEN; Prostate cancer; Biology; Cancer research; Androgen receptor; Protein kinase B; Cancer; PI3K/AKT/mTOR pathway; Internal medicine; Genetics; Medicine; Apoptosis","score_opus":0.011516458896808397,"score_gpt":0.25973403908736353,"score_spread":0.24821758019055515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021466588","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995442,0.000102176724,0.000078648976,0.000010678053,0.0000010730507,0.000002451791,0.00007215419,0.0000066547323,0.00018184268],"genre_scores_gemma":[0.9997446,0.000037719612,0.00003217585,0.000005542888,0.0000032517285,0.000002071218,0.000085480955,0.0000018430721,0.00008733966],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99989796,0.000015701575,0.000009683391,0.000029604538,0.000026457814,0.000020624535],"domain_scores_gemma":[0.99964035,0.00006033171,0.00018331203,0.000018708672,0.000019890904,0.000077474244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016002053,0.00021720743,0.00024047245,0.0008200931,0.00019786812,0.00025879848,0.00019214742,0.00022953143,0.0017794856],"category_scores_gemma":[0.00048287783,0.00012490895,0.00016651284,0.00039489375,0.00029571707,0.000104077386,0.00021369084,0.00019069803,0.00018976572],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013556882,0.00007606024,0.901705,0.000045191373,0.00010880848,0.0053054444,0.00014234011,0.00028801878,0.08392642,0.00009365094,0.00024905443,0.006704283],"study_design_scores_gemma":[0.0000104349065,0.00016110296,0.988282,0.0000026716507,0.000041616055,0.008441808,0.00005662099,0.00024599093,0.0024367683,0.000050937248,0.00026537158,0.0000046587566],"about_ca_topic_score_codex":0.0010274255,"about_ca_topic_score_gemma":0.000901946,"teacher_disagreement_score":0.0017794856,"about_ca_system_score_codex":0.00011303027,"about_ca_system_score_gemma":0.00010240839,"threshold_uncertainty_score":0.005953014},"labels":[],"label_agreement":null},{"id":"W2021630037","doi":"10.1002/path.2995","title":"Concurrent <i>CIC</i> mutations, <i>IDH</i> mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Glioma Diagnosis and Treatment","field":"Medicine","cited_by":310,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Hotchkiss Brain Institute; University of Calgary; BC Cancer Agency; Foothills Medical Centre; Canada's Michael Smith Genome Sciences Centre","funders":"National Cancer Institute; BC Cancer Foundation; Alberta Innovates; Ministry of Fisheries, New Zealand; Brain Tumour Foundation of Canada; Alberta Cancer Foundation","keywords":"Oligodendroglioma; IDH1; Biology; Exon; Genetics; Mutation; Oligodendroglial Tumor; Gene; Exome sequencing; IDH2; Cancer research; Astrocytoma; Glioma","score_opus":0.029951122570132844,"score_gpt":0.28402297761029877,"score_spread":0.25407185504016594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021630037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980793,0.0004347071,0.00040314486,0.000024017558,0.000004770054,0.000024114479,0.00018409482,0.000025599544,0.000820202],"genre_scores_gemma":[0.99853957,0.00026555592,0.0007027813,0.000026667065,0.000008382639,0.000011105414,0.0002976659,0.000006903253,0.00014140713],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999696,0.000019280587,0.000050391984,0.00007950183,0.00007837802,0.00007643079],"domain_scores_gemma":[0.9994573,0.000075252414,0.00021790256,0.000053528365,0.00005689697,0.00013910576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028776104,0.00038498032,0.00048423294,0.0012501731,0.00033888186,0.0007126181,0.00025709393,0.0003182173,0.00085649826],"category_scores_gemma":[0.0013160023,0.00023123599,0.00024238668,0.0006355131,0.00038777286,0.0002973523,0.00059111847,0.00028683193,0.0003328812],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006573675,0.000055347788,0.8321774,0.00010863381,0.00007460413,0.008898493,0.00030148216,0.00018495119,0.13784935,0.00019781754,0.00028998413,0.01920452],"study_design_scores_gemma":[0.000031270705,0.00014415506,0.9169069,0.000035832763,0.00012925279,0.043798048,0.00029929186,0.0010249818,0.034497805,0.00048680368,0.0026294093,0.000016155189],"about_ca_topic_score_codex":0.0019228196,"about_ca_topic_score_gemma":0.0030932291,"teacher_disagreement_score":0.0019228196,"about_ca_system_score_codex":0.00033111477,"about_ca_system_score_gemma":0.00030813116,"threshold_uncertainty_score":0.0038232803},"labels":[],"label_agreement":null},{"id":"W2022497376","doi":"10.1002/path.4090","title":"The autophagy protein <scp>LC3A</scp> correlates with hypoxia and is a prognostic marker of patient survival in clear cell ovarian cancer","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Vancouver General Hospital; University of Victoria; BC Cancer Agency; Simon Fraser University; Canadian Institutes of Health Research","funders":"Canadian Institutes of Health Research","keywords":"Autophagy; Serous fluid; Ovarian cancer; Hypoxia (environmental); Biology; Cancer research; Clear cell; Programmed cell death; Tumor hypoxia; Cell; Internal medicine; Cancer; Oncology; Pathology; Immunohistochemistry; Apoptosis; Medicine; Immunology; Radiation therapy; Chemistry","score_opus":0.008501553379664567,"score_gpt":0.2408275807758122,"score_spread":0.23232602739614763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022497376","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998741,0.00070370414,0.00016336596,0.000028148863,0.0000036616093,0.0000031251616,0.00013041946,0.000006626336,0.00021985703],"genre_scores_gemma":[0.9994112,0.00013235968,0.00008908422,0.000009629035,0.0000063223056,0.0000034058403,0.00022559156,0.0000012839631,0.00012119208],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998684,0.000030365842,0.000017332852,0.000026672598,0.00003666021,0.000020560336],"domain_scores_gemma":[0.999374,0.00013669256,0.00027798797,0.000042842243,0.00007860867,0.000089892405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030929994,0.00011649134,0.00026830297,0.00039832812,0.00016826676,0.00026927525,0.0001037487,0.0002272153,0.0009517401],"category_scores_gemma":[0.0007768865,0.0001045372,0.00018025868,0.00045080975,0.00019361003,0.00018296801,0.00019186732,0.00024719234,0.0001640404],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011835643,0.00002625852,0.9819785,0.000026492524,0.00007514226,0.00012824815,0.000036349385,0.000113900285,0.0112662995,0.000022514725,0.00015205957,0.00499063],"study_design_scores_gemma":[0.00000784815,0.00013676097,0.99718213,0.0000023584876,0.000030757587,0.0005549145,0.00002873618,0.0002968581,0.0014916098,0.00003941763,0.00022636645,0.0000022279935],"about_ca_topic_score_codex":0.0007462437,"about_ca_topic_score_gemma":0.0010796402,"teacher_disagreement_score":0.0009517401,"about_ca_system_score_codex":0.0001530871,"about_ca_system_score_gemma":0.00012260243,"threshold_uncertainty_score":0.0031839013},"labels":[],"label_agreement":null},{"id":"W2024733621","doi":"10.1002/path.2021","title":"Array CGH profiling of favourable histology Wilms tumours reveals novel gains and losses associated with relapse","year":2006,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Wilms tumour; Histology; Wilms' tumor; Profiling (computer programming); Pathology; Biology; Medicine; Cancer research; Oncology; Computer science","score_opus":0.009402787824560728,"score_gpt":0.2285158423975758,"score_spread":0.21911305457301508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024733621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99942553,0.00012558732,0.00017223538,0.000011155919,8.173291e-7,0.0000029705502,0.00014289387,0.000011986489,0.00010683991],"genre_scores_gemma":[0.99887913,0.000101409234,0.00031665814,0.000013600496,0.0000026690298,0.000008268216,0.00038680428,0.0000049487603,0.00028648356],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998846,0.000012453728,0.000008403935,0.000029109451,0.000034604745,0.000030838448],"domain_scores_gemma":[0.99987364,0.00003632342,0.00004347452,0.000011900947,0.000013160202,0.000021558526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010584056,0.00012428733,0.00021680228,0.0004833699,0.00013415828,0.00020378515,0.000102679835,0.00016184167,0.0007441027],"category_scores_gemma":[0.0003693452,0.0001074151,0.00011042865,0.00034941628,0.00015942793,0.00007219043,0.00012253942,0.00014221594,0.0001635082],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054557936,0.00002268541,0.1893073,0.00003906518,0.000037573813,0.0007443604,0.00024272263,0.0005188839,0.79799986,0.000052340783,0.00016695881,0.01032266],"study_design_scores_gemma":[0.000011891497,0.00023067958,0.9495737,0.000003098924,0.000042101077,0.0019643467,0.00012408961,0.0008799503,0.046375953,0.00008508691,0.0007010318,0.000008085913],"about_ca_topic_score_codex":0.00091810786,"about_ca_topic_score_gemma":0.0015729938,"teacher_disagreement_score":0.00091810786,"about_ca_system_score_codex":0.00016324974,"about_ca_system_score_gemma":0.00007291522,"threshold_uncertainty_score":0.0024892688},"labels":[],"label_agreement":null},{"id":"W2026169826","doi":"10.1002/(sici)1096-9896(200002)190:2<150::aid-path510>3.0.co;2-w","title":"Differential expression of matrix metalloproteinases and their inhibitors in non-small cell lung cancer","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research; University of Toronto","funders":"Bristol-Myers Squibb","keywords":"Matrix metalloproteinase; Adenocarcinoma; Pathology; Stromal cell; Immunohistochemistry; Lung cancer; Metastasis; Carcinoma; Cell; Biology; Cancer research; Cancer; Medicine","score_opus":0.005347082684218768,"score_gpt":0.23215547545558274,"score_spread":0.22680839277136397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026169826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924799,0.0063531725,0.00041971725,0.000013727308,0.0000033219392,0.0000071198883,0.00012598131,0.0000100832185,0.0005869955],"genre_scores_gemma":[0.9979019,0.0010989713,0.0003943869,0.000008492613,0.0000027218887,0.000007980766,0.0002448774,0.0000021577812,0.00033839242],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998055,0.000026180214,0.000024365389,0.00003420038,0.000065763285,0.000044016713],"domain_scores_gemma":[0.9998385,0.00004255854,0.000042436586,0.000014107127,0.00003556089,0.000026909307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023417086,0.00014832476,0.00023659173,0.000978841,0.00016566587,0.00030465456,0.00012193937,0.00016741967,0.00031306857],"category_scores_gemma":[0.00037077875,0.00013686933,0.00015004,0.0006016934,0.00016531667,0.00022115328,0.0001707311,0.00011711193,0.00011536203],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062067196,0.00004150628,0.19367504,0.00020304279,0.00012244447,0.0010270543,0.00024573546,0.00019042463,0.78064615,0.00018432701,0.0001408611,0.02290268],"study_design_scores_gemma":[0.000020703825,0.00034741245,0.9033304,0.000015758511,0.00014620202,0.00493362,0.00018669642,0.0006378039,0.08622575,0.0001832237,0.0039605694,0.0000117996315],"about_ca_topic_score_codex":0.00092473574,"about_ca_topic_score_gemma":0.0022064932,"teacher_disagreement_score":0.000978841,"about_ca_system_score_codex":0.00020981667,"about_ca_system_score_gemma":0.00012742594,"threshold_uncertainty_score":0.0018386245},"labels":[],"label_agreement":null},{"id":"W2027290875","doi":"10.1002/path.2526","title":"Professor Jeremy R Jass: An appreciation","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Colorectal Cancer Surgical Treatments","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Intellect; Originality; Memoir; Medal; Classics; History; Sociology; Art history; Philosophy; Theology; Social science","score_opus":0.031682594523292675,"score_gpt":0.34459964728978953,"score_spread":0.31291705276649684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027290875","genre_codex":"commentary","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004813585,0.029623512,0.00094190787,0.5115054,0.44762832,0.00006428079,0.00013777887,0.0004341812,0.009183275],"genre_scores_gemma":[0.0050967503,0.024129061,0.0016621265,0.4522785,0.4229237,0.00017322596,0.00023524961,0.00033779923,0.09316356],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99582845,0.00079798984,0.00038217017,0.0007716781,0.0018913907,0.00032834188],"domain_scores_gemma":[0.9736642,0.00324303,0.0011106732,0.00063123886,0.0135358535,0.00781499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0044502323,0.0013745701,0.0017013054,0.0017079122,0.0015917767,0.005499306,0.0020460356,0.007521234,0.0251201],"category_scores_gemma":[0.03397479,0.0007250673,0.0013100879,0.0009130051,0.0013096137,0.005225135,0.0026566705,0.013733897,0.03894529],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010951294,0.0000067194333,0.00009548314,0.00006256297,0.000003537824,0.00023118616,0.000043593096,0.000010011879,0.000079020276,0.00015571766,0.98972255,0.009578677],"study_design_scores_gemma":[0.000017646194,0.000023250808,0.0005522004,0.0002275176,0.0000070054484,0.0038878063,0.00023545386,0.000064265165,0.0000753513,0.0007073023,0.9941671,0.000035052275],"about_ca_topic_score_codex":0.0014058902,"about_ca_topic_score_gemma":0.0024815283,"teacher_disagreement_score":0.0251201,"about_ca_system_score_codex":0.0014789568,"about_ca_system_score_gemma":0.0034945137,"threshold_uncertainty_score":0.08403516},"labels":[],"label_agreement":null},{"id":"W2031692395","doi":"10.1002/path.2911","title":"Loss of BAF250a (<i>ARID1A</i>) is frequent in high‐grade endometrial carcinomas","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":236,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; Centre for Advancing Health Outcomes; Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research; University of British Columbia; Michael Smith Health Research BC; Sanofi; Ovarian Cancer Canada; BC Cancer Foundation","keywords":"Clear cell carcinoma; Pathology; Clear cell; Medicine; Adenocarcinoma; Carcinoma; Adenosquamous carcinoma; Endometrial hyperplasia; Cancer; Internal medicine","score_opus":0.02723187470418587,"score_gpt":0.25857117889889636,"score_spread":0.2313393041947105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031692395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841714,0.00073755963,0.00034347188,0.000015240709,0.00000225735,0.000004327955,0.000051346775,0.000007738361,0.00042092812],"genre_scores_gemma":[0.99941254,0.0002115318,0.00022474087,0.000009784564,0.0000035131236,0.0000028241664,0.000045797773,0.0000014673872,0.000087763285],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999731,0.000042396554,0.000042945674,0.000045562225,0.00008639952,0.000051699717],"domain_scores_gemma":[0.9994111,0.000102125225,0.00027375258,0.00006478882,0.00006751307,0.000080666905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034169827,0.00012094452,0.00019686247,0.0008217993,0.0002037428,0.00034708742,0.00017191052,0.000249584,0.00059616566],"category_scores_gemma":[0.0009800036,0.00015677908,0.00013123512,0.0004989373,0.0003584474,0.00019481072,0.00025241982,0.00012936398,0.00019686659],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004861561,0.000022679978,0.7917798,0.00010186334,0.00009453029,0.005663353,0.00031971102,0.00012319002,0.18884566,0.00011942308,0.00019598863,0.012247663],"study_design_scores_gemma":[0.00001482564,0.0000760991,0.9456122,0.000015756983,0.000042775955,0.032625165,0.0003222208,0.00035534232,0.018652774,0.0001273345,0.002146048,0.000009502673],"about_ca_topic_score_codex":0.0006104442,"about_ca_topic_score_gemma":0.0008496051,"teacher_disagreement_score":0.0008217993,"about_ca_system_score_codex":0.0001564292,"about_ca_system_score_gemma":0.00010596679,"threshold_uncertainty_score":0.0019943714},"labels":[],"label_agreement":null},{"id":"W2033380259","doi":"10.1002/path.1777","title":"PU.1 protein expression has a positive linear association with protein expression of germinal centre B cell genes including <i>BCL‐6, CD10, CD20</i> and <i>CD22</i> : identification of PU.1 putative binding sites in the <i>BCL‐6</i> promotor","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"CAR-T cell therapy research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"BCL6; Germinal center; B cell; CD22; Molecular biology; Biology; Population; Follicular lymphoma; PAX5; Transcription factor; Cell; Gene; Diffuse large B-cell lymphoma; B-cell lymphoma; Lymphoma; Antibody; Genetics; Immunology; Medicine","score_opus":0.02743003368574839,"score_gpt":0.3033733703464049,"score_spread":0.2759433366606565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033380259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949007,0.0017767721,0.002053767,0.000054960394,0.000012221442,0.00000793102,0.0002668104,0.00008943049,0.0008373988],"genre_scores_gemma":[0.9944554,0.0006167248,0.0016336835,0.000027709968,0.000011187216,0.000028085336,0.00085373514,0.000011847683,0.0023616608],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998599,0.00001319492,0.000005889945,0.00004938207,0.000037095186,0.00003454968],"domain_scores_gemma":[0.9996965,0.00008976163,0.000093404546,0.000017961827,0.00003552117,0.000066898014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000102952494,0.00017807118,0.00016034051,0.0004208395,0.00012904427,0.00032379714,0.00012243185,0.00021783792,0.0031390125],"category_scores_gemma":[0.00025541373,0.00016562987,0.00013704301,0.00030179834,0.0002463418,0.00019983543,0.00020714647,0.00044234097,0.0005835276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010781469,0.000024285122,0.0059004496,0.00003944922,0.000008653489,0.000033095144,0.000031006213,0.000024031922,0.9916967,0.000035395726,0.00003923319,0.0020599207],"study_design_scores_gemma":[0.000016579339,0.0006018677,0.33355215,0.00001367564,0.000031431526,0.0017134238,0.00010636617,0.0009849312,0.6592823,0.00013894771,0.003547318,0.000010956822],"about_ca_topic_score_codex":0.00033211443,"about_ca_topic_score_gemma":0.00031965278,"teacher_disagreement_score":0.0031390125,"about_ca_system_score_codex":0.00015145975,"about_ca_system_score_gemma":0.0001109032,"threshold_uncertainty_score":0.010501087},"labels":[],"label_agreement":null},{"id":"W2034817683","doi":"10.1002/path.2501","title":"Inflammatory rather than infectious insults play a role in exocrine tissue damage in a mouse model for coxsackievirus B4‐induced pancreatitis","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatitis Pathology and Treatment","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Vlaamse regering; Fonds Wetenschappelijk Onderzoek; University of Calgary","keywords":"Coxsackievirus; Pancreatitis; Pancreas; Acute pancreatitis; Parenchyma; Medicine; Immunology; Pathology; Biology; Internal medicine; Virus; Enterovirus","score_opus":0.02288667624462482,"score_gpt":0.28310807088432294,"score_spread":0.2602213946396981,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034817683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957371,0.0015396822,0.0013921726,0.0001643936,0.000040444986,0.000062600506,0.00016957369,0.000073504125,0.0008204824],"genre_scores_gemma":[0.9913344,0.0016724069,0.0031220769,0.00009289181,0.000026132417,0.00017044831,0.00030109208,0.00002967857,0.0032508548],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995758,0.00012939812,0.000049149876,0.000073042625,0.000092163056,0.00008061744],"domain_scores_gemma":[0.9995968,0.000057052497,0.00012720637,0.000048395497,0.000020095018,0.00015041526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050386146,0.0012682527,0.00051047513,0.0013125994,0.00040083894,0.00067867734,0.0004384596,0.0010880154,0.0018969941],"category_scores_gemma":[0.00023868323,0.00050297036,0.00046516783,0.00036179987,0.0006866464,0.0007891464,0.00036012265,0.001852906,0.0003153554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013159619,0.0005114426,0.0007406852,0.00009132857,0.0000120744435,0.00023721159,0.000035773315,0.000081310696,0.9956489,0.00019485713,0.000037387923,0.0010930569],"study_design_scores_gemma":[0.00034440274,0.0058157747,0.013543271,0.00005875253,0.00008690301,0.0012781051,0.00014737643,0.0019612522,0.9747243,0.000257056,0.0017629458,0.000019772133],"about_ca_topic_score_codex":0.0004036158,"about_ca_topic_score_gemma":0.00053575117,"teacher_disagreement_score":0.0018969941,"about_ca_system_score_codex":0.0004136212,"about_ca_system_score_gemma":0.0002613034,"threshold_uncertainty_score":0.0063461065},"labels":[],"label_agreement":null},{"id":"W2036187256","doi":"10.1002/path.2076","title":"Cathepsin protease activity modulates amyloid load in extracerebral amyloidosis","year":2006,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Amyloidosis: Diagnosis, Treatment, Outcomes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; Kingston General Hospital; Biotechnology Research Institute","funders":"Deutsche Forschungsgemeinschaft","keywords":"Amyloidosis; Amyloid (mycology); Cathepsin B; Proteases; Amyloid disease; Cerebral amyloid angiopathy; Chemistry; P3 peptide; Cathepsin; Serum amyloid A; Amyloid precursor protein; Cathepsin D; Biochemistry; Biology; Alzheimer's disease; Immunology; Pathology; Medicine; Enzyme; Inflammation; Amyloid β; Amyloid fibril; Dementia; Disease","score_opus":0.009704011532021274,"score_gpt":0.25399098874534304,"score_spread":0.24428697721332177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036187256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99893445,0.00042577155,0.0002880254,0.000016440492,0.000004564589,0.000003878023,0.00006204618,0.000013695902,0.00025110092],"genre_scores_gemma":[0.99872226,0.00029770614,0.00028717433,0.00002126558,0.000005385664,0.000010830272,0.0001250675,0.000013967938,0.0005163711],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998264,0.000033533666,0.000018209646,0.00004399015,0.00003565027,0.000042226227],"domain_scores_gemma":[0.9995523,0.00004315105,0.00016381533,0.0000325935,0.00005121456,0.0001568215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013969533,0.00037164325,0.0003131256,0.0003399618,0.000084193394,0.00038700935,0.00012674175,0.0004120482,0.00071324117],"category_scores_gemma":[0.0003176054,0.00019788189,0.00019040298,0.00015861822,0.00030778738,0.00026372314,0.00020502722,0.00062966585,0.00021663388],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031278527,0.000025182822,0.0011805664,0.000011267429,0.0000055949204,0.00006711226,0.00001194764,0.000010301787,0.9980007,0.000014913245,0.000007371897,0.00035228083],"study_design_scores_gemma":[0.00005993399,0.0008535826,0.125795,0.000009310965,0.00006360694,0.0015523724,0.00006647692,0.000834556,0.8700111,0.000119007156,0.0006215322,0.000013514431],"about_ca_topic_score_codex":0.00017066568,"about_ca_topic_score_gemma":0.0001693959,"teacher_disagreement_score":0.00071324117,"about_ca_system_score_codex":0.00018382401,"about_ca_system_score_gemma":0.000070787486,"threshold_uncertainty_score":0.002385974},"labels":[],"label_agreement":null},{"id":"W2037179394","doi":"10.1002/path.4022","title":"Proximity ligation assays for isoform‐specific Akt activation in breast cancer identify activated Akt1 as a driver of progression","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"PI3K/AKT/mTOR signaling in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"Breakthrough Breast Cancer","keywords":"AKT2; AKT1; Breast cancer; Protein kinase B; Cancer research; Cancer; PI3K/AKT/mTOR pathway; Medicine; Gene isoform; Phosphorylation; Signal transduction; Internal medicine; Chemistry; Biochemistry; Gene","score_opus":0.01974887804100404,"score_gpt":0.3318536652557937,"score_spread":0.3121047872147896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037179394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.928529,0.02154783,0.042642273,0.00031704875,0.0001277335,0.00024289702,0.0012093426,0.00047060783,0.0049131755],"genre_scores_gemma":[0.9724392,0.0032650535,0.018981157,0.00011632435,0.000044542227,0.0003979744,0.0015366776,0.000024588751,0.0031945468],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978459,0.0009176963,0.00009030436,0.0004936932,0.00045018594,0.00020226013],"domain_scores_gemma":[0.99864835,0.0005914975,0.00047349188,0.000117688134,0.000093916184,0.00007510364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015531138,0.00063070736,0.00070972554,0.0011996991,0.00034625808,0.0006367107,0.00034993197,0.00073401415,0.0024064346],"category_scores_gemma":[0.0016557691,0.00052641385,0.0007718406,0.0009636782,0.0003974468,0.0004634603,0.0007706684,0.0015377179,0.00088652136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024951305,0.00038062036,0.033787772,0.0007034131,0.0003765106,0.00014620073,0.00024736553,0.001087908,0.92241436,0.0008310216,0.0008445273,0.036685232],"study_design_scores_gemma":[0.00021587982,0.0062143,0.20557308,0.0000969656,0.0005974092,0.0027754474,0.00023385692,0.010573761,0.7619148,0.0014875996,0.010238788,0.00007804695],"about_ca_topic_score_codex":0.00029610077,"about_ca_topic_score_gemma":0.00066505646,"teacher_disagreement_score":0.0024064346,"about_ca_system_score_codex":0.00048674882,"about_ca_system_score_gemma":0.00022651274,"threshold_uncertainty_score":0.0082137585},"labels":[],"label_agreement":null},{"id":"W2037385405","doi":"10.1002/path.1822","title":"Co‐expression of c‐kit and stem cell factor in primary and metastatic nasopharyngeal carcinomas and nasopharyngeal epithelium","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Gastrointestinal Tumor Research and Treatment","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Defence Medical Centre","funders":"Tri-Service General Hospital","keywords":"Stem cell factor; Nasopharyngeal carcinoma; Paracrine signalling; Autocrine signalling; Stem cell; Cancer research; Immunohistochemistry; Autophosphorylation; Pathology; Biology; Chemistry; Cell culture; Medicine; Internal medicine; Cell biology; Receptor","score_opus":0.025638805413283255,"score_gpt":0.2894269149284817,"score_spread":0.2637881095151985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037385405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975096,0.0013663396,0.00031385227,0.000008109705,0.0000043818054,0.000009637505,0.000083858315,0.000009344688,0.00069478404],"genre_scores_gemma":[0.99817467,0.000650862,0.00042449386,0.000006733383,0.0000026077516,0.000014238146,0.00018271554,0.0000027045896,0.0005409187],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99979657,0.000019149737,0.000017880868,0.00003762274,0.000081385566,0.00004744028],"domain_scores_gemma":[0.9998766,0.000026873198,0.000015761145,0.000019209217,0.000030716008,0.0000308322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013428563,0.00014546797,0.0002478595,0.00056014856,0.00022504783,0.00025615902,0.000113580114,0.00017543501,0.0009665614],"category_scores_gemma":[0.00035793366,0.000164955,0.00015697951,0.0003983579,0.00021476913,0.0001838701,0.00023929436,0.00013677774,0.00023450668],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052563567,0.000040807583,0.07229033,0.00015217571,0.000037442755,0.0029439537,0.00022668343,0.00010763832,0.9158036,0.00012299835,0.00008630459,0.0076623876],"study_design_scores_gemma":[0.000028879896,0.0004644814,0.66873056,0.00002209982,0.00013080687,0.021204147,0.00085644284,0.0015324738,0.30220026,0.00015553668,0.0046531493,0.000021221857],"about_ca_topic_score_codex":0.0027413864,"about_ca_topic_score_gemma":0.0033644408,"teacher_disagreement_score":0.0027413864,"about_ca_system_score_codex":0.0003052395,"about_ca_system_score_gemma":0.0002747576,"threshold_uncertainty_score":0.0054509044},"labels":[],"label_agreement":null},{"id":"W2037529618","doi":"10.1002/path.2829","title":"The expression of CXCR4, CXCL12 and CXCR7 in malignant pleural mesothelioma","year":2010,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chemokine receptors and signaling","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Cancer Institute; National Institutes of Health","keywords":"Mesothelioma; CXCR4; Cancer research; Cell culture; Chemokine receptor; Protein kinase B; Pleural disease; PI3K/AKT/mTOR pathway; Metastasis; Cell; Pathology; Mesothelial Cell; Cell growth; Immunohistochemistry; Medicine; Chemokine; Biology; Receptor; Internal medicine; Signal transduction; Respiratory disease; Cancer; Cell biology; Lung","score_opus":0.010486947333964478,"score_gpt":0.271954915919294,"score_spread":0.2614679685853295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037529618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977933,0.0014922209,0.0002737226,0.000023800842,0.0000027171886,0.0000064791398,0.00006987534,0.000009708269,0.00032804077],"genre_scores_gemma":[0.99839276,0.0005814005,0.00050994044,0.000015750711,0.0000053841236,0.000013119098,0.00019413221,0.0000018998468,0.0002854985],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997869,0.000039945327,0.0000242176,0.00002464234,0.000072456816,0.000051849605],"domain_scores_gemma":[0.999877,0.000024998586,0.00003196633,0.0000131596935,0.000025264744,0.000027624901],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023625788,0.00017580978,0.00016124894,0.00079083146,0.00023174167,0.00022764229,0.000103351456,0.00025127325,0.00054865336],"category_scores_gemma":[0.0003057273,0.00021193043,0.00017654672,0.00034612013,0.0002510886,0.00016440586,0.00017151904,0.00018978887,0.00018896657],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026694115,0.000017100801,0.040074825,0.000080484075,0.000022710086,0.0005093884,0.00008693055,0.00011206346,0.95524555,0.000060296465,0.0000768306,0.0034470328],"study_design_scores_gemma":[0.000049882343,0.000683674,0.6329145,0.000029019435,0.00012543207,0.0073335557,0.0004029428,0.0034790826,0.3511728,0.0002020869,0.0035858066,0.000021223865],"about_ca_topic_score_codex":0.0008495346,"about_ca_topic_score_gemma":0.0010399107,"teacher_disagreement_score":0.0008495346,"about_ca_system_score_codex":0.00023006715,"about_ca_system_score_gemma":0.00015670643,"threshold_uncertainty_score":0.0018354654},"labels":[],"label_agreement":null},{"id":"W2039589045","doi":"10.1002/path.2855","title":"<b><i>PTEN</i></b> deletion and heme oxygenase‐1 overexpression cooperate in prostate cancer progression and are associated with adverse clinical outcome","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Heme Oxygenase-1 and Carbon Monoxide","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Cancer Foundation; Rockyview General Hospital; Queen's University; University of Calgary; McGill University; Jewish General Hospital; Kingston General Hospital; Calgary Laboratory Services","funders":"Canadian Institutes of Health Research; Prostate Cancer Canada","keywords":"PTEN; Prostate cancer; Cancer research; Intraepithelial neoplasia; Prostate; Heme oxygenase; Metastasis; Cancer; Medicine; Biology; Apoptosis; Internal medicine; Heme; PI3K/AKT/mTOR pathway; Enzyme","score_opus":0.030817802893308797,"score_gpt":0.3097263570343397,"score_spread":0.2789085541410309,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039589045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992949,0.00024779502,0.00017048969,0.000013339312,0.0000013809743,0.000005445559,0.000062841194,0.000010167552,0.00019359255],"genre_scores_gemma":[0.9995592,0.000089404515,0.00009160685,0.000010936027,0.0000037763562,0.0000042910765,0.00010247355,0.0000026520393,0.00013562651],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979466,0.00004140357,0.000012904285,0.00004946916,0.00006503801,0.000036486217],"domain_scores_gemma":[0.99951637,0.000045962548,0.00025667658,0.00003320227,0.000022830884,0.00012493774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029053012,0.0001936656,0.00030895777,0.00044385687,0.00014822649,0.00029715477,0.00015060518,0.00017260415,0.0008644386],"category_scores_gemma":[0.00027024304,0.00014346998,0.00018606657,0.0002999453,0.0002915012,0.000105272964,0.00020766103,0.00036595092,0.00015296147],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031867847,0.00030251866,0.5022468,0.00009730839,0.0002503066,0.0012069669,0.00010762401,0.00033934676,0.4794637,0.00016769215,0.00027507037,0.01235589],"study_design_scores_gemma":[0.000016933871,0.00067495636,0.98175955,0.0000036392348,0.00006342645,0.0033009434,0.000048953723,0.00039004214,0.013227443,0.0000552659,0.00045262513,0.000006274717],"about_ca_topic_score_codex":0.00078516937,"about_ca_topic_score_gemma":0.0007379474,"teacher_disagreement_score":0.0008644386,"about_ca_system_score_codex":0.00012571743,"about_ca_system_score_gemma":0.00018507268,"threshold_uncertainty_score":0.0028918386},"labels":[],"label_agreement":null},{"id":"W2045297055","doi":"10.1002/path.1369","title":"<i>Retracted: </i>Autonomous histopathological regression of primary tumours associated with specific immune responses to cancer antigens","year":2003,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":41,"is_retracted":true,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Charles Sturt University; Dalhousie University; Univerzita Karlova v Praze","keywords":"Melanoma; Medicine; Cancer; Antigen; Immune system; Malignancy; Oncology; Proportional hazards model; Regression; Tumour heterogeneity; Pathology; Immunology; Internal medicine; Cancer research","score_opus":0.020799498936066595,"score_gpt":0.2536961184830497,"score_spread":0.2328966195469831,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045297055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98838997,0.0030350897,0.0022587827,0.0003061881,0.00013816598,0.00006812196,0.00029860766,0.00014327462,0.0053617777],"genre_scores_gemma":[0.9908765,0.00066348753,0.001044138,0.00025494117,0.00006663451,0.000034082983,0.00041026168,0.000026925167,0.006622962],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997383,0.000030473775,0.000021318156,0.00007670793,0.00007574604,0.00005735934],"domain_scores_gemma":[0.99920976,0.00009519632,0.000268146,0.00013816603,0.000115246454,0.00017339457],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00030244584,0.00032489584,0.00035196988,0.00034727925,0.00025414696,0.00048546784,0.0005185387,0.0004873596,0.005794599],"category_scores_gemma":[0.0009923228,0.00009291829,0.00033333662,0.00023853783,0.00043954139,0.00038044536,0.00043757228,0.00073411624,0.0013024799],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004351345,0.00050495024,0.2154215,0.0008800414,0.00016593003,0.014495406,0.0007796787,0.0006493538,0.58287835,0.0009893047,0.0073457044,0.17153849],"study_design_scores_gemma":[0.00014017035,0.0054294798,0.6962223,0.00012726751,0.0001690753,0.10124107,0.00041706138,0.0016458124,0.16309717,0.00056704006,0.03089921,0.000044305416],"about_ca_topic_score_codex":0.00076614897,"about_ca_topic_score_gemma":0.00074080663,"teacher_disagreement_score":0.9995126,"about_ca_system_score_codex":0.00043826803,"about_ca_system_score_gemma":0.0002263871,"threshold_uncertainty_score":0.019384801},"labels":[],"label_agreement":null},{"id":"W2045679709","doi":"10.1002/path.2528","title":"Osteopontin stimulates invasion of NCI‐h295 cells but is not associated with survival in adrenocortical carcinoma","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer, Hypoxia, and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Mount Sinai Hospital; University of Toronto; University Health Network","funders":"Julius-Maximilians-Universität Würzburg","keywords":"Osteopontin; Adrenocortical carcinoma; Biology; Integrin; Carcinogenesis; Cancer research; Pathology; Western blot; Metastasis; Cancer; Cell; Endocrinology; Medicine; Gene","score_opus":0.01368111960592425,"score_gpt":0.24065139719042242,"score_spread":0.22697027758449817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045679709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971132,0.0012902875,0.000337693,0.000038044232,0.0000103050525,0.000010342327,0.00018445995,0.000018107969,0.0009975405],"genre_scores_gemma":[0.9970049,0.00048472176,0.00031597176,0.000032119056,0.0000035953267,0.00001579315,0.00047794243,0.0000037305172,0.001661147],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998976,0.000012549006,0.000006373516,0.000012270285,0.00004795813,0.000023386368],"domain_scores_gemma":[0.99990046,0.0000258284,0.000013341784,0.00001039529,0.000015401132,0.000034546076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008275647,0.00015524638,0.00019827115,0.0001715148,0.00015117032,0.00020004874,0.00005213083,0.00012163511,0.0010798125],"category_scores_gemma":[0.00011817022,0.00008727458,0.0001961789,0.000137463,0.00009444018,0.00006889494,0.00013952015,0.0002670071,0.00029988354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013142235,0.00006357903,0.0038784258,0.000033886543,0.000007427193,0.00012226612,0.000046231624,0.000059196424,0.9938159,0.000032384512,0.00010059852,0.0017087848],"study_design_scores_gemma":[0.00005761053,0.001554917,0.37261432,0.000015947142,0.00004362137,0.0016351136,0.0002839807,0.0033467205,0.6154816,0.000119306234,0.0048322463,0.000014589607],"about_ca_topic_score_codex":0.0033394138,"about_ca_topic_score_gemma":0.004372131,"teacher_disagreement_score":0.0033394138,"about_ca_system_score_codex":0.00022703556,"about_ca_system_score_gemma":0.00020952999,"threshold_uncertainty_score":0.0066399574},"labels":[],"label_agreement":null},{"id":"W2046003313","doi":"10.1002/path.2154","title":"Morphological features of <i>TMPRSS2–ERG</i> gene fusion prostate cancer","year":2007,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"NIH Clinical Center; National Cancer Institute; Prostate Cancer Foundation; National Institutes of Health; University of California, San Francisco; National Institute on Aging; Deutsche Forschungsgemeinschaft; Dana-Farber/Harvard Cancer Center","keywords":"TMPRSS2; Erg; Prostate cancer; Fusion gene; Prostate; Cancer; Biology; Cancer research; Oncology; Medicine; Internal medicine; Gene; Genetics; Disease","score_opus":0.02710436547551293,"score_gpt":0.3493619663808476,"score_spread":0.3222576009053347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046003313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770063,0.0004961548,0.00052268786,0.000023959246,0.000005713948,0.000020776646,0.00013750223,0.000017813541,0.0010746662],"genre_scores_gemma":[0.9995059,0.00007917682,0.00022769123,0.0000073173564,0.000004117984,0.000006200756,0.00007181971,0.0000021320955,0.00009557326],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99957186,0.000089180314,0.000060064824,0.00008321617,0.00014052543,0.000055180903],"domain_scores_gemma":[0.9987888,0.0003169987,0.00050678814,0.00010406052,0.00012626809,0.00015720779],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067179813,0.00024369478,0.00029477468,0.001360836,0.00027186028,0.00035617434,0.0002629175,0.00025032015,0.0014920585],"category_scores_gemma":[0.0017880551,0.0002404665,0.000283532,0.0005199567,0.00069216924,0.00026103895,0.0003779156,0.00020552476,0.0002507286],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006457604,0.000031391828,0.9412446,0.00008112122,0.00006342739,0.0025056025,0.00017370547,0.00020583131,0.04885569,0.00007767411,0.00016504787,0.0059501445],"study_design_scores_gemma":[0.0000068559666,0.0001108749,0.98931926,0.000004129477,0.000018638866,0.008311436,0.000109919885,0.00009792087,0.0017883298,0.000036910416,0.00018949971,0.0000062394884],"about_ca_topic_score_codex":0.0009293947,"about_ca_topic_score_gemma":0.0015562619,"teacher_disagreement_score":0.0014920585,"about_ca_system_score_codex":0.00023626597,"about_ca_system_score_gemma":0.00015821248,"threshold_uncertainty_score":0.004991412},"labels":[],"label_agreement":null},{"id":"W2046073394","doi":"10.1002/path.2164","title":"Role of APAF‐1, E‐cadherin and peritumoural lymphocytic infiltration in tumour budding in colorectal cancer","year":2007,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Budding; Colorectal cancer; Tumor budding; KRAS; Biology; Cancer research; Immune system; Lymphocytic infiltration; Tissue microarray; Pathology; Cancer; Immunology; Medicine; Immunohistochemistry; Metastasis; Genetics","score_opus":0.0117755651770716,"score_gpt":0.2878923359005315,"score_spread":0.27611677072345986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046073394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985252,0.0012016097,0.000096507814,0.000007210425,9.519154e-7,0.0000023097389,0.000024139821,0.0000031103677,0.00013889639],"genre_scores_gemma":[0.99959475,0.00022214017,0.00008236127,0.0000026351154,0.0000013445459,0.0000016002367,0.000031857744,5.0874024e-7,0.00006276247],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999874,0.00003142587,0.000013424595,0.000018745337,0.000037599577,0.0000248288],"domain_scores_gemma":[0.9995521,0.000106203246,0.00018383468,0.000027222703,0.000047308604,0.00008328725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000322677,0.00016311687,0.0001939023,0.0010150471,0.00020234637,0.00040626447,0.00013457623,0.00022484345,0.0005128422],"category_scores_gemma":[0.0005746618,0.00014305823,0.00014862973,0.00047120205,0.00029143062,0.00026495205,0.0002808245,0.00015914618,0.00011483259],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018640187,0.000055598026,0.87878186,0.00012251231,0.00007878934,0.00082797254,0.00016334592,0.00031635477,0.105693206,0.00007341879,0.000041454372,0.011981421],"study_design_scores_gemma":[0.000009416471,0.00022297907,0.986272,0.000009882814,0.0000508689,0.0018220999,0.00019313578,0.0008491263,0.010186145,0.00008162012,0.00029423414,0.000008382246],"about_ca_topic_score_codex":0.00063189864,"about_ca_topic_score_gemma":0.00092876755,"teacher_disagreement_score":0.0010150471,"about_ca_system_score_codex":0.00019162032,"about_ca_system_score_gemma":0.0001561715,"threshold_uncertainty_score":0.0017156005},"labels":[],"label_agreement":null},{"id":"W2048296559","doi":"10.1002/path.2903","title":"Using mouse models to investigate the biological and physiological consequences of defects in the Fanconi anaemia/breast cancer DNA repair signalling pathway","year":2011,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill Genome Centre; Jewish General Hospital; McGill University Health Centre","funders":"Ministero dello Sviluppo Economico; Jewish General Hospital","keywords":"PALB2; DNA repair; Biology; Fanconi anemia; Breast cancer; Gene; Cancer research; Genetics; Heterozygote advantage; Phenotype; Cancer; DNA damage; Mutation; Germline mutation; DNA; Allele","score_opus":0.09863245447651377,"score_gpt":0.2823714572975623,"score_spread":0.18373900282104855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048296559","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07644906,0.049999252,0.023411527,0.76605195,0.04137847,0.00054769294,0.00084069243,0.0013450213,0.03997632],"genre_scores_gemma":[0.32444295,0.0779885,0.023555567,0.4783108,0.036635,0.00139859,0.00076850416,0.00026558668,0.05663452],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999206,0.00031510432,0.00007216858,0.00010163222,0.00023066213,0.00007453889],"domain_scores_gemma":[0.99865675,0.0007455311,0.00020484887,0.00013450164,0.00014489325,0.00011342256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016113296,0.0007470581,0.0005681767,0.0002785202,0.00048679774,0.0009941605,0.00071008987,0.0076847128,0.002039444],"category_scores_gemma":[0.002325435,0.0002414926,0.00056671124,0.00021784581,0.0011577058,0.0008641956,0.0005337513,0.0056539704,0.0020523896],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002048756,0.00080308475,0.0048966724,0.0016835853,0.00026428077,0.06036416,0.00054606143,0.0007283107,0.21190237,0.038547847,0.5108973,0.16731766],"study_design_scores_gemma":[0.0013177556,0.002282897,0.004975349,0.0005141975,0.00027605475,0.09363051,0.00028047498,0.003246356,0.059263177,0.020515958,0.81355476,0.00014250589],"about_ca_topic_score_codex":0.00025417967,"about_ca_topic_score_gemma":0.00052307197,"teacher_disagreement_score":0.0076847128,"about_ca_system_score_codex":0.0007820655,"about_ca_system_score_gemma":0.00022578696,"threshold_uncertainty_score":0.008521676},"labels":[],"label_agreement":null},{"id":"W2049473348","doi":"10.1002/path.2365","title":"Snail‐associated epithelial–mesenchymal transition promotes oesophageal squamous cell carcinoma motility and progression","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Terry Fox Foundation; Cancer Research Society","keywords":"Vimentin; Snail; Epithelial–mesenchymal transition; Biology; Pathology; Cadherin; Cancer research; Epithelial cell adhesion molecule; Ectopic expression; Immunohistochemistry; Epithelium; Cell adhesion molecule; Metastasis; Cell; Cancer; Cell culture; Cell biology; Immunology; Medicine","score_opus":0.019532183920441575,"score_gpt":0.26549885884217234,"score_spread":0.24596667492173077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049473348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99701416,0.0011638075,0.0006645293,0.000032121832,0.0000072960315,0.00001623556,0.00008955673,0.0000392231,0.00097310904],"genre_scores_gemma":[0.9984035,0.00047401115,0.00018053524,0.000010731809,0.000002127876,0.000006951553,0.000103979815,0.0000020868767,0.0008160337],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999372,0.000012256011,0.000005847632,0.0000073420765,0.000018026392,0.000019352965],"domain_scores_gemma":[0.9999393,0.000006435072,0.00001725947,0.0000041612107,0.000010398014,0.000022383885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009494169,0.00013322626,0.00012233944,0.00020164107,0.000108348875,0.00023263713,0.00004623816,0.00010042457,0.0012995333],"category_scores_gemma":[0.00011819331,0.00009077773,0.00015735027,0.0001282128,0.00011023002,0.000106211395,0.00018590607,0.0002211491,0.00025121315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047650762,0.00005798461,0.013868247,0.00009876928,0.00001971471,0.00039294842,0.000061529114,0.000101390775,0.98038155,0.00015374733,0.00014591278,0.0042418037],"study_design_scores_gemma":[0.00006605101,0.0010214986,0.48198652,0.000033787743,0.000095017436,0.0025643655,0.00035915265,0.0052947267,0.50130695,0.0002968611,0.0069603054,0.00001477683],"about_ca_topic_score_codex":0.0006846974,"about_ca_topic_score_gemma":0.0008016771,"teacher_disagreement_score":0.0012995333,"about_ca_system_score_codex":0.000100463454,"about_ca_system_score_gemma":0.00016198726,"threshold_uncertainty_score":0.004347384},"labels":[],"label_agreement":null},{"id":"W2049811206","doi":"10.1002/path.997","title":"Expression and localization of HGF and met in Wilms' tumours","year":2001,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Institute of Genetics; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Institutes of Health","keywords":"Hepatocyte growth factor; Wilms' tumor; Immunohistochemistry; Biology; Stromal cell; Pathology; Blastema; Paracrine signalling; Receptor tyrosine kinase; Western blot; Wilms tumour; Pathogenesis; In situ hybridization; Kidney; Cancer research; Receptor; Signal transduction; Regeneration (biology); Cell biology; Immunology; Medicine; Gene expression; Endocrinology; Gene","score_opus":0.005432547626971075,"score_gpt":0.23530135852229056,"score_spread":0.2298688108953195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049811206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979759,0.0010255291,0.0003422289,0.00000766393,0.0000028188401,0.0000053455165,0.00005885592,0.000008210857,0.0005733921],"genre_scores_gemma":[0.99831116,0.00048234116,0.00044965892,0.0000062046297,0.0000064875676,0.0000060529405,0.00013666676,0.000003237808,0.000598081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987125,0.000013086193,0.000014483755,0.000025833951,0.00005046777,0.00002484896],"domain_scores_gemma":[0.9998215,0.000030217408,0.00006804768,0.000010676095,0.000023578923,0.000046034536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012390842,0.000113796494,0.00013872869,0.0009055583,0.00016802628,0.00015838834,0.0000956775,0.0001276458,0.00054259825],"category_scores_gemma":[0.00019617648,0.00011134093,0.00009133569,0.00031832472,0.00023225772,0.00014798895,0.00019444848,0.00009056943,0.000092344846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033290943,0.0000132938085,0.039977346,0.000114568924,0.00002218395,0.0032533933,0.00026844107,0.00014478988,0.9492422,0.00017627508,0.0000734442,0.006381162],"study_design_scores_gemma":[0.000023980505,0.0005421122,0.82061964,0.000018500257,0.000083071405,0.024396598,0.00045021376,0.0011883416,0.14621356,0.0002726746,0.0061705764,0.000020813512],"about_ca_topic_score_codex":0.0008606136,"about_ca_topic_score_gemma":0.0012781073,"teacher_disagreement_score":0.0009055583,"about_ca_system_score_codex":0.00019656388,"about_ca_system_score_gemma":0.00014550667,"threshold_uncertainty_score":0.0018151999},"labels":[],"label_agreement":null},{"id":"W2050252268","doi":"10.1002/path.1737","title":"Epidermis promotes dermal fibrosis: role in the pathogenesis of hypertrophic scars","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Dermatologic Treatments and Research","field":"Medicine","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cégep de Chicoutimi; Université Laval; Centre hospitalier universitaire de Québec; Hôpital du Saint-Sacrement","funders":"Canadian Institutes of Health Research","keywords":"Dermis; Hypertrophic scar; Epidermis (zoology); Extracellular matrix; Scars; Fibrosis; Pathology; Myofibroblast; Chemistry; Wound healing; Pathogenesis; Fibroblast; Anatomy; Medicine; Immunology; In vitro","score_opus":0.02462606082601934,"score_gpt":0.3046164590077464,"score_spread":0.2799903981817271,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050252268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9509702,0.036126815,0.0053648343,0.000327228,0.000095418225,0.000055762364,0.0001465679,0.00013614482,0.0067769666],"genre_scores_gemma":[0.98632485,0.008414101,0.0016432921,0.00009158806,0.000044106495,0.000022396616,0.000058914953,0.000009908599,0.0033909199],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998859,0.00003598545,0.000007904562,0.00002126897,0.000027632319,0.00002128502],"domain_scores_gemma":[0.9998976,0.000013522076,0.000028105023,0.0000082952565,0.000015541375,0.00003689385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025603475,0.0003596893,0.00018915981,0.0002602842,0.00017924831,0.00041135115,0.00016140276,0.00034485728,0.0018824582],"category_scores_gemma":[0.00012845865,0.000124321,0.0001535946,0.000109097295,0.00022076901,0.0003323472,0.00027587026,0.0004028115,0.00041800598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004032122,0.00010775504,0.0029297338,0.00026473618,0.00001840787,0.0009110754,0.0000728394,0.00006909883,0.98434687,0.0005238006,0.000119446064,0.010232985],"study_design_scores_gemma":[0.00017956796,0.0025658787,0.25195286,0.00023123265,0.00022678073,0.012764359,0.0007632661,0.0026590778,0.7125332,0.0017790544,0.014303276,0.000041566083],"about_ca_topic_score_codex":0.00013363596,"about_ca_topic_score_gemma":0.00015195593,"teacher_disagreement_score":0.0018824582,"about_ca_system_score_codex":0.00012165668,"about_ca_system_score_gemma":0.00012597423,"threshold_uncertainty_score":0.006297469},"labels":[],"label_agreement":null},{"id":"W2053456405","doi":"10.1002/path.2109","title":"The significance of LMO2 expression in the progression of prostate cancer","year":2006,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Chinese University of Hong Kong; University of Hong Kong","keywords":"LNCaP; DU145; Prostate cancer; Cancer research; Prostate; PCA3; Carcinogenesis; Biology; Tissue microarray; Hyperplasia; Metastasis; Cancer; Pathology; Medicine; Internal medicine; Endocrinology","score_opus":0.019888637183012522,"score_gpt":0.35203973332241395,"score_spread":0.3321510961394014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053456405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940195,0.0037872232,0.0008975473,0.00009436601,0.00001064435,0.000016350788,0.00020090469,0.000040010545,0.0009334439],"genre_scores_gemma":[0.9980751,0.00070070685,0.00033841,0.00002644151,0.00000764356,0.0000130326725,0.00015992355,0.0000033873966,0.00067538477],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999143,0.000020483347,0.000004558151,0.000019147536,0.00001798381,0.000023490722],"domain_scores_gemma":[0.99991035,0.000014864038,0.00003004245,0.0000064556925,0.00001189503,0.000026330898],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015476617,0.00022139611,0.00012529043,0.00031669738,0.00021157145,0.00039156032,0.00011917769,0.00020391733,0.0008085978],"category_scores_gemma":[0.00018902116,0.00011046931,0.00012896027,0.00020354512,0.00020302682,0.00019949977,0.0002273282,0.00023495565,0.00016848625],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006083317,0.000050943367,0.02153403,0.0000959881,0.00001860241,0.00026588276,0.000046151312,0.00014663248,0.97205305,0.00010487888,0.000109882785,0.004965433],"study_design_scores_gemma":[0.000043737375,0.00080126105,0.53971493,0.000023867024,0.00008960686,0.0016875581,0.00035028864,0.0026605562,0.44619906,0.00023718369,0.008161903,0.000030063096],"about_ca_topic_score_codex":0.00073870725,"about_ca_topic_score_gemma":0.0009178962,"teacher_disagreement_score":0.0008085978,"about_ca_system_score_codex":0.00022773563,"about_ca_system_score_gemma":0.00022479327,"threshold_uncertainty_score":0.0027050376},"labels":[],"label_agreement":null},{"id":"W2053526027","doi":"10.1002/path.1140","title":"Altered expression of connexins 26 and 43 in Sertoli cells in seminiferous tubules infiltrated with carcinoma‐<i>in‐situ</i> or seminoma","year":2002,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Sperm and Testicular Function","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Sertoli cell; Spermatogenesis; Seminoma; Biology; Immunostaining; Seminiferous tubule; Testicle; Blood–testis barrier; Cytokeratin; Gap junction; Endocrinology; Internal medicine; Immunohistochemistry; Andrology; Cell biology; Intracellular; Medicine; Immunology; Genetics","score_opus":0.023914774250489143,"score_gpt":0.23987732137739076,"score_spread":0.2159625471269016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053526027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99873286,0.00037165926,0.00045167693,0.000008489081,0.000005605693,0.000005074663,0.000047231937,0.000022368095,0.00035509325],"genre_scores_gemma":[0.9981395,0.00029224885,0.0005644846,0.00001191472,0.0000060033944,0.000008951252,0.00017858323,0.0000076167207,0.00079072575],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998234,0.000023778975,0.00001971258,0.000031983156,0.000056412322,0.00004483429],"domain_scores_gemma":[0.9998153,0.000020347683,0.00005929281,0.0000122413885,0.000021057192,0.00007177223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016565784,0.00025960858,0.00034610063,0.00045327167,0.00019277209,0.00030589555,0.00009806582,0.00029638037,0.0011472404],"category_scores_gemma":[0.00015247073,0.00022024655,0.00022711742,0.00025635352,0.0003108238,0.0002264074,0.00016846647,0.00025963804,0.00026646032],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001664671,0.000020155077,0.002369322,0.00004178695,0.000012167924,0.00034332534,0.00008389,0.000031650445,0.9964353,0.00006858711,0.000008479541,0.00041898788],"study_design_scores_gemma":[0.000050642397,0.0017177484,0.17436674,0.00001662196,0.00011334171,0.006986871,0.0005043464,0.0018524297,0.81182265,0.00015027901,0.0023982704,0.00002012282],"about_ca_topic_score_codex":0.00060100417,"about_ca_topic_score_gemma":0.0005884938,"teacher_disagreement_score":0.0011472404,"about_ca_system_score_codex":0.00016324119,"about_ca_system_score_gemma":0.0001727464,"threshold_uncertainty_score":0.0038378835},"labels":[],"label_agreement":null},{"id":"W2055718473","doi":"10.1002/path.1612","title":"Evaluation of immunohistochemical markers in non‐small cell lung cancer by unsupervised hierarchical clustering analysis: a tissue microarray study of 284 cases and 18 markers","year":2004,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lung Cancer Treatments and Mutations","field":"Medicine","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"World Health Organization","keywords":"Chromogranin A; Adenocarcinoma; Tissue microarray; Cytokeratin; Immunohistochemistry; Synaptophysin; Pathology; Lung cancer; Internal medicine; Carcinoma; Small Cell Lung Carcinoma; Biology; Oncology; Cancer; Small-cell carcinoma; Medicine","score_opus":0.01885201599082935,"score_gpt":0.3497826194916076,"score_spread":0.33093060350077824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055718473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971265,0.00023443635,0.0021418799,0.00002053413,0.000003005598,0.00002129873,0.00018811045,0.00001323595,0.0002509459],"genre_scores_gemma":[0.9950841,0.000120430544,0.0036008495,0.0000133449,0.0000051994466,0.00006672552,0.0007777783,0.0000048045263,0.00032672787],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995561,0.00011416244,0.000030455703,0.00009043274,0.00014977761,0.00005900097],"domain_scores_gemma":[0.999757,0.00008289145,0.00004876033,0.00003512838,0.000055495606,0.000020723828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003964907,0.00014229637,0.00029012488,0.00047664082,0.0002892717,0.00022792594,0.00014625699,0.00019267028,0.00034981273],"category_scores_gemma":[0.000613179,0.00012437174,0.00021141677,0.0005326873,0.00011554082,0.00012466502,0.00011342901,0.00014688354,0.00013520867],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00089565635,0.00025291654,0.34800723,0.00018988496,0.00030660848,0.0006001897,0.00056747004,0.0017088033,0.6059934,0.00019101742,0.0006281626,0.040658753],"study_design_scores_gemma":[0.000018948158,0.0003264355,0.9486667,0.000009397191,0.00015667858,0.0014088814,0.00029083202,0.008399831,0.038657885,0.00017261851,0.0018687728,0.000023011895],"about_ca_topic_score_codex":0.00094592816,"about_ca_topic_score_gemma":0.001919803,"teacher_disagreement_score":0.00094592816,"about_ca_system_score_codex":0.00022407726,"about_ca_system_score_gemma":0.0002053105,"threshold_uncertainty_score":0.0020968914},"labels":[],"label_agreement":null},{"id":"W2056530323","doi":"10.1002/path.4472","title":"A human prostatic bacterial isolate alters the prostatic microenvironment and accelerates prostate cancer progression","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Prostate Cancer Diagnosis and Treatment","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"National Institutes of Health; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; Prostate Cancer Foundation","keywords":"Prostate cancer; Inflammation; Prostate; Hyperplasia; Medicine; Cancer; Stromal cell; Cancer research; Prostatic Diseases; Carcinogenesis; Tumor microenvironment; Pathology; Immunology; Internal medicine","score_opus":0.014625865967799292,"score_gpt":0.30022844057100584,"score_spread":0.28560257460320654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056530323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996316,0.0018003721,0.0007875275,0.0000779375,0.000023822173,0.00003576807,0.00020732572,0.000058493795,0.00069281895],"genre_scores_gemma":[0.99647254,0.0012029986,0.0008841796,0.00006563306,0.000011514166,0.000030916974,0.00030947517,0.00001201688,0.0010106588],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997187,0.000060594255,0.000014395994,0.00003748462,0.00007642145,0.00009241953],"domain_scores_gemma":[0.99983287,0.00002323476,0.000044253127,0.000015818381,0.000015020657,0.00006886405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019103417,0.0003021173,0.0003057626,0.0003084686,0.00016199761,0.00039077573,0.000123959,0.00026120528,0.0011482369],"category_scores_gemma":[0.00015067325,0.00016557933,0.0003118157,0.00019383908,0.00018560904,0.00013984767,0.00024740642,0.00064590684,0.0002489988],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005702725,0.00018997821,0.0023121296,0.00008060702,0.000010855982,0.0001064843,0.000038643815,0.000085258886,0.994402,0.000059293674,0.00007078402,0.0020736207],"study_design_scores_gemma":[0.000062345294,0.0075354204,0.097906165,0.000038420963,0.00006410279,0.0015277542,0.00027216302,0.0018637035,0.8861884,0.000097784236,0.004414595,0.000029148012],"about_ca_topic_score_codex":0.0008224839,"about_ca_topic_score_gemma":0.0012335487,"teacher_disagreement_score":0.0011482369,"about_ca_system_score_codex":0.00020358065,"about_ca_system_score_gemma":0.00038837458,"threshold_uncertainty_score":0.0038412213},"labels":[],"label_agreement":null},{"id":"W2057212896","doi":"10.1002/path.1585","title":"The hypoxia‐regulated transcription factor DEC1 (Stra13, SHARP‐2) and its expression in human tissues and tumours","year":2004,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer, Hypoxia, and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Cancer Research UK","keywords":"Hypoxia (environmental); Biology; Polyclonal antibodies; Antiserum; Transcription factor; Immunohistochemistry; Pathology; Molecular biology; Cell biology; Cancer research; Gene; Immunology; Chemistry; Medicine; Antibody; Biochemistry; Oxygen","score_opus":0.014018967427793403,"score_gpt":0.2658373977767438,"score_spread":0.2518184303489504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057212896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9752519,0.01961716,0.002197707,0.00010341845,0.00001495631,0.00002103742,0.00028087554,0.000031416024,0.002481546],"genre_scores_gemma":[0.9885982,0.0073182047,0.0014409712,0.00003730551,0.000008912278,0.000020322188,0.0005822688,0.0000054881507,0.0019882312],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999124,0.00001945656,0.000009468707,0.000017693552,0.000021225216,0.000019783794],"domain_scores_gemma":[0.99988925,0.000018188368,0.000039298975,0.000008746588,0.00002066718,0.000023797875],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013336747,0.00013039488,0.00012131054,0.00049390335,0.0001380902,0.00026864288,0.000100031095,0.00019770555,0.00072051527],"category_scores_gemma":[0.00019633814,0.00015614546,0.00008550127,0.0003113808,0.00017513732,0.00015201679,0.00018644091,0.00020868402,0.00030816524],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005020645,0.000016913984,0.0080910595,0.00023142686,0.000017333277,0.00094024534,0.00016672374,0.00018557174,0.9773566,0.00028664008,0.00015375491,0.012051633],"study_design_scores_gemma":[0.0000357825,0.0010985022,0.33683282,0.000104099396,0.00011020704,0.028130207,0.0007200548,0.0013413666,0.6066955,0.00071360206,0.02418549,0.000032327105],"about_ca_topic_score_codex":0.00048653356,"about_ca_topic_score_gemma":0.00050732214,"teacher_disagreement_score":0.00072051527,"about_ca_system_score_codex":0.00018507321,"about_ca_system_score_gemma":0.00013550889,"threshold_uncertainty_score":0.0024102926},"labels":[],"label_agreement":null},{"id":"W2061343866","doi":"10.1002/path.1453","title":"MSI‐low, a real phenomenon which varies in frequency among cancer types","year":2003,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Cancer Research UK; University of Chicago","keywords":"Microsatellite instability; Colorectal cancer; Medicine; Oncology; Internal medicine; Breast cancer; Ovarian carcinomas; Ovarian cancer; Cancer; Pathology; Biology; Microsatellite; Ovarian carcinoma; Gene","score_opus":0.01693798712371336,"score_gpt":0.28678303029721147,"score_spread":0.2698450431734981,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061343866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99723756,0.00095587864,0.001185161,0.000032968863,0.0000056093877,0.0000100701645,0.00013030636,0.000023596864,0.00041878928],"genre_scores_gemma":[0.99892706,0.00016621452,0.0005440887,0.000018101246,0.000008070057,0.000006496667,0.00015612117,0.0000044238736,0.00016938052],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99950576,0.000102423124,0.00006229826,0.0001382067,0.00012764597,0.00006365489],"domain_scores_gemma":[0.9969119,0.0009196216,0.0014715461,0.00020706608,0.000329666,0.00016024755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046715143,0.00017041816,0.00030736774,0.0014984737,0.0002520992,0.0003559276,0.00023816197,0.00032470477,0.0009953788],"category_scores_gemma":[0.0024364395,0.00013344164,0.00015936303,0.00082618557,0.00032672222,0.0002522459,0.00029766912,0.00026650686,0.0002454942],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053103094,0.000034208348,0.84769344,0.00014746042,0.00010437967,0.0008119893,0.00038092938,0.00008168794,0.12461483,0.00018355859,0.00012345385,0.025293],"study_design_scores_gemma":[0.000008544098,0.00046474594,0.95604503,0.000019160214,0.00008793565,0.011177276,0.0002959279,0.00027486696,0.029432632,0.00019102733,0.001985941,0.00001686078],"about_ca_topic_score_codex":0.00043424824,"about_ca_topic_score_gemma":0.0007511586,"teacher_disagreement_score":0.0014984737,"about_ca_system_score_codex":0.00019748588,"about_ca_system_score_gemma":0.000100369325,"threshold_uncertainty_score":0.0033298135},"labels":[],"label_agreement":null},{"id":"W2061477818","doi":"10.1002/path.1705","title":"CD10<sup>+</sup> stromal cells form B‐lymphocyte maturation niches in the human bone marrow","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"Norges Forskningsråd; Kreftforeningen","keywords":"Stromal cell; Lymphopoiesis; Bone marrow; Lymph node stromal cell; Population; B cell; Pathology; Lymphocyte; CD20; Immunology; Biology; Immunohistochemistry; Cell biology; Haematopoiesis; Chemistry; Medicine; Stem cell; Antibody","score_opus":0.012460144773672048,"score_gpt":0.23114339943590909,"score_spread":0.21868325466223704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061477818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99407923,0.0018318496,0.0017504095,0.000032508928,0.0000049836995,0.000016141643,0.00012500642,0.000044029402,0.0021158676],"genre_scores_gemma":[0.9955859,0.0005677707,0.0019119238,0.000021038224,0.000007984204,0.000013912367,0.00034453277,0.000008498297,0.0015384607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994695,0.000011283666,0.0000050264252,0.000012465913,0.0000132149335,0.000011073633],"domain_scores_gemma":[0.9999374,0.0000104413975,0.000015918133,0.0000059494655,0.000008015904,0.000022200715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001105127,0.00014913795,0.00007914408,0.0003531555,0.00012978494,0.0002550536,0.00007346596,0.00013586275,0.001995268],"category_scores_gemma":[0.00010539148,0.0001439658,0.000053613083,0.00012507055,0.00014479597,0.00008961053,0.00014131471,0.00012499045,0.00068334606],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033997733,0.000022958093,0.015077787,0.00006182968,0.0000073780825,0.00063615,0.0001369588,0.00006998828,0.9680664,0.00036015286,0.00014861608,0.01507185],"study_design_scores_gemma":[0.00017467041,0.0008605708,0.26357332,0.0000791053,0.000083865576,0.025409574,0.0010698003,0.0017637553,0.67012995,0.0010732143,0.0357616,0.000020457674],"about_ca_topic_score_codex":0.00062859466,"about_ca_topic_score_gemma":0.0010138559,"teacher_disagreement_score":0.001995268,"about_ca_system_score_codex":0.00007975358,"about_ca_system_score_gemma":0.00013930506,"threshold_uncertainty_score":0.006674826},"labels":[],"label_agreement":null},{"id":"W2062112167","doi":"10.1002/path.2729","title":"‘Evidence‐based medicine: the time has come to set standards for staging’. Is a radical overhaul really needed?","year":2010,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Radiomics and Machine Learning in Medical Imaging","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre","funders":"","keywords":"Set (abstract data type); Medicine; Medical physics; Psychology; Computer science","score_opus":0.047573956595056324,"score_gpt":0.3617793782966894,"score_spread":0.31420542170163307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062112167","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006260994,0.0012494469,0.00009362454,0.9916055,0.0066966885,0.0000019580586,0.000013912185,0.0000068925897,0.00026937303],"genre_scores_gemma":[0.0017762275,0.0017643471,0.0005454856,0.96707124,0.02773005,0.000015058688,0.00002288474,0.0000179592,0.0010567503],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9781578,0.009053988,0.0029885373,0.0017810611,0.007000298,0.0010183795],"domain_scores_gemma":[0.87068677,0.09327175,0.005858523,0.0026543806,0.020553134,0.006975371],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.023123741,0.0008116578,0.0021161726,0.0010775097,0.003396204,0.0050854743,0.0029014947,0.057962816,0.0055585243],"category_scores_gemma":[0.14165531,0.00089176506,0.0013273775,0.001458129,0.0073605315,0.010847123,0.0032290278,0.0714558,0.007091461],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059983475,0.000014515268,0.00024830378,0.00020504696,0.00001432881,0.00049106794,0.0002205841,0.000053370462,0.00018306538,0.0027847453,0.97956276,0.0161623],"study_design_scores_gemma":[0.00010888206,0.00009325698,0.0010249292,0.001382648,0.00003463353,0.0039048186,0.0009629779,0.00041060123,0.00032692947,0.028397715,0.9632169,0.00013566909],"about_ca_topic_score_codex":0.0045976746,"about_ca_topic_score_gemma":0.007907729,"teacher_disagreement_score":0.97687626,"about_ca_system_score_codex":0.0065162727,"about_ca_system_score_gemma":0.0060776058,"threshold_uncertainty_score":0.122291505},"labels":[],"label_agreement":null},{"id":"W2063794709","doi":"10.1002/path.1600","title":"Glycosylphosphatidylinositol‐specific phospholipase D immunoreactivity is present in islet amyloid in type 2 diabetes","year":2004,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lysosomal Storage Disorders Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Purdue University; American Diabetes Association","keywords":"Islet; Amyloid (mycology); Proteoglycan; In vitro; Phospholipase D; Chemistry; Endocrinology; Internal medicine; Pancreatic islets; Fibril; Biochemistry; Biology; Insulin; Extracellular matrix; Medicine; Enzyme","score_opus":0.021620719659547066,"score_gpt":0.29722321673408675,"score_spread":0.27560249707453965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063794709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99377304,0.0044837003,0.0006079796,0.000042923904,0.0000318245,0.000010418052,0.000102034675,0.000022996226,0.0009250821],"genre_scores_gemma":[0.9949084,0.003328439,0.00064570253,0.000065139735,0.000045117966,0.000015097586,0.00026996582,0.0000068192753,0.00071537064],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999212,0.000010158433,0.000012528782,0.000022156508,0.000023835932,0.000010076456],"domain_scores_gemma":[0.9999001,0.000018022423,0.000035213412,0.0000068626,0.000010371659,0.000029416324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001940734,0.00038796122,0.00020923054,0.0009467549,0.00016376081,0.00036519166,0.000104470935,0.0002657406,0.00067693874],"category_scores_gemma":[0.00020976625,0.00019234336,0.00028018453,0.0005288873,0.00017596642,0.00013530387,0.0001603951,0.00040181968,0.00014687108],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015612356,0.00015675127,0.1798255,0.00025046917,0.0001449838,0.008629933,0.00025027792,0.00007562162,0.78810036,0.000098057644,0.00024696963,0.020659799],"study_design_scores_gemma":[0.00008499975,0.0004906676,0.93968433,0.00003254338,0.00020465131,0.019555055,0.00021676157,0.0003431899,0.036020394,0.0002168271,0.0031337894,0.00001680683],"about_ca_topic_score_codex":0.0004870825,"about_ca_topic_score_gemma":0.00031071415,"teacher_disagreement_score":0.0009467549,"about_ca_system_score_codex":0.00015276164,"about_ca_system_score_gemma":0.00007643755,"threshold_uncertainty_score":0.0022645593},"labels":[],"label_agreement":null},{"id":"W2064662414","doi":"10.1002/path.3987","title":"Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Simon Fraser University; Ontario Institute for Cancer Research; BC Cancer Agency; University of British Columbia","funders":"National Cancer Institute; Vancouver Coastal Health Research Institute","keywords":"Transcriptome; Biology; Prostate cancer; Chromoplexy; Gene; Genome; Exome; Computational biology; Cancer; Exome sequencing; Cancer research; Genetics; Mutation; Gene expression; PCA3","score_opus":0.040995023883108765,"score_gpt":0.32429042947912545,"score_spread":0.2832954055960167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064662414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970584,0.00009497397,0.0021250956,0.000051898205,0.0000025098354,0.000008545172,0.00014499795,0.000038119382,0.00047550723],"genre_scores_gemma":[0.9979061,0.000048877413,0.0015315815,0.000027940412,0.000004160817,0.0000046937553,0.00017237171,0.000008694643,0.00029561477],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998481,0.000020514794,0.000006965444,0.000047081874,0.000045892644,0.00003143291],"domain_scores_gemma":[0.99985945,0.000035131146,0.000038318707,0.000020528472,0.000010991137,0.000035641562],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012833966,0.00018413152,0.00023436095,0.0003914256,0.00023913426,0.0006231798,0.00014764532,0.00032715517,0.0010611174],"category_scores_gemma":[0.0002597735,0.00014700124,0.00016359786,0.00036407862,0.00030919703,0.00015589967,0.00044218812,0.0003757927,0.0001764387],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050786586,0.00011018226,0.11700197,0.00006612736,0.00013774767,0.01043227,0.00070841773,0.0009356975,0.84796584,0.0013771004,0.0004131766,0.020343613],"study_design_scores_gemma":[0.000046161203,0.0010916962,0.7198651,0.000017701921,0.0002381242,0.12292085,0.0013302284,0.01383275,0.12646705,0.002999256,0.011104197,0.000086853484],"about_ca_topic_score_codex":0.00040642545,"about_ca_topic_score_gemma":0.001540947,"teacher_disagreement_score":0.0010611174,"about_ca_system_score_codex":0.00015977629,"about_ca_system_score_gemma":0.00012726297,"threshold_uncertainty_score":0.0035497546},"labels":[],"label_agreement":null},{"id":"W2070999190","doi":"10.1002/(sici)1096-9896(200003)190:4<417::aid-path544>3.0.co;2-g","title":"p53 gene mutations in sequential oral epithelial dysplasias and squamous cell carcinomas","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer-related Molecular Pathways","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Health Sciences Centre; University of Toronto","funders":"National Institute of Dental and Craniofacial Research; Medical Research Council","keywords":"Biology; Missense mutation; Carcinogenesis; Dysplasia; Gene mutation; Immunohistochemistry; Tumor suppressor gene; Pathology; Epithelial dysplasia; Carcinoma; Cancer research; Epidermoid carcinoma; Carcinoma in situ; Gene; Cancer; Leukoplakia; Mutation; Medicine; Genetics; Immunology","score_opus":0.015445236011149326,"score_gpt":0.25969086480754,"score_spread":0.24424562879639067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070999190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992137,0.00042386458,0.00012571203,0.0000070135325,0.000001805498,0.000006698183,0.000023986086,0.0000032790422,0.00019392236],"genre_scores_gemma":[0.9994684,0.0001598334,0.00013218382,0.0000073582914,0.000003752782,0.000006059425,0.000052437823,0.000001575682,0.00016853155],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996418,0.000061792874,0.00004955404,0.00009273679,0.00008804694,0.00006598952],"domain_scores_gemma":[0.9989134,0.00020919208,0.00041374713,0.000077065866,0.00016987421,0.00021660168],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006119827,0.00031125912,0.00030438282,0.001339482,0.00043690985,0.00037664003,0.00017083026,0.00031615587,0.000866189],"category_scores_gemma":[0.0018909555,0.00034884212,0.00030605454,0.00054382515,0.00040188065,0.00038916344,0.00035634908,0.00021985275,0.00023890863],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005889303,0.00007132447,0.9432997,0.00004166713,0.00004451168,0.0048613544,0.00034630622,0.00013135593,0.041239873,0.000059979953,0.0000617822,0.009253183],"study_design_scores_gemma":[0.000022667764,0.0005492777,0.9742924,0.0000151829145,0.00006216191,0.017583868,0.00030179875,0.0002015635,0.0063150064,0.00008474959,0.00056023995,0.000011132025],"about_ca_topic_score_codex":0.0010518604,"about_ca_topic_score_gemma":0.0020192878,"teacher_disagreement_score":0.001339482,"about_ca_system_score_codex":0.00033228734,"about_ca_system_score_gemma":0.000357848,"threshold_uncertainty_score":0.0032364726},"labels":[],"label_agreement":null},{"id":"W2071070516","doi":"10.1002/path.2160","title":"Role of BRAF‐V600E in the serrated pathway of colorectal tumourigenesis","year":2007,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Bayer Corporation","keywords":"MLH1; Microsatellite instability; Cancer research; V600E; Colorectal cancer; Gene silencing; DNA mismatch repair; DNA methylation; Mutation; Biology; Methylation; Medicine; Cancer; Gene; Genetics; Gene expression; Allele","score_opus":0.012756555553121851,"score_gpt":0.2735143106505478,"score_spread":0.260757755097426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071070516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931774,0.003853534,0.0013950395,0.00010776643,0.000016056712,0.000015150925,0.000076424105,0.00004507831,0.0013134548],"genre_scores_gemma":[0.9973769,0.0010720468,0.0006223821,0.000013595799,0.00000552684,0.000003963892,0.000044820274,0.000004070335,0.000856657],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99990034,0.000032745014,0.0000069595526,0.00001344509,0.00002841926,0.000018129704],"domain_scores_gemma":[0.99985635,0.000021694586,0.0000388851,0.000016368407,0.000013321121,0.000053313557],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001542829,0.00021643424,0.00016752219,0.00027077793,0.00013635907,0.00029776958,0.000119061726,0.00024532035,0.0010807882],"category_scores_gemma":[0.00020855154,0.000107120715,0.00012700185,0.00007182211,0.0003548725,0.00016954035,0.0001962734,0.00023741605,0.00020823383],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031845513,0.00002538213,0.0018077284,0.000059416117,0.0000064979768,0.000660192,0.000026164927,0.00012560411,0.993458,0.00057493,0.000042634103,0.0028950393],"study_design_scores_gemma":[0.0001124665,0.0019369368,0.078175165,0.00003174854,0.000036941234,0.009043883,0.0001928231,0.00322686,0.8953215,0.0012118428,0.010682408,0.000027399352],"about_ca_topic_score_codex":0.0003977832,"about_ca_topic_score_gemma":0.0005746046,"teacher_disagreement_score":0.0010807882,"about_ca_system_score_codex":0.00020166492,"about_ca_system_score_gemma":0.00016164996,"threshold_uncertainty_score":0.0036155581},"labels":[],"label_agreement":null},{"id":"W2071278424","doi":"10.1002/path.4542","title":"Categorization of cancer through genomic complexity could guide research and management strategies","year":2015,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"Terry Fox Research Institute; KWF Kankerbestrijding; National Institute for Health and Care Research; BC Cancer Agency; University College London; Cancer Research UK","keywords":"Categorization; Context (archaeology); Disease; Cancer; Genomic information; Genomics; Personalized medicine; Bioinformatics; Precision medicine; Computational biology; Medicine; Data science; Genome; Computer science; Biology; Genetics; Pathology; Artificial intelligence; Internal medicine; Gene","score_opus":0.19417273160670845,"score_gpt":0.46184400892239796,"score_spread":0.2676712773156895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071278424","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00033029035,0.98404676,0.004260755,0.006876786,0.0009197777,0.00003968135,0.00010181915,0.000049368315,0.003374758],"genre_scores_gemma":[0.0042057857,0.9859747,0.0058859177,0.0016989313,0.00067748077,0.000056705187,0.00016903503,0.000009283762,0.0013222756],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99950373,0.00014645391,0.00006499293,0.00009582879,0.0001491402,0.00003986864],"domain_scores_gemma":[0.99840456,0.000916221,0.000112069,0.00006697091,0.000406464,0.000093707895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022524248,0.0011730152,0.0017489884,0.00475346,0.00046433677,0.0018919143,0.0015463782,0.0019242172,0.0028593712],"category_scores_gemma":[0.003773253,0.00031924984,0.00080456375,0.0024144102,0.0019078836,0.003070555,0.0011637626,0.0037448318,0.0018959957],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048470723,0.000050138427,0.0009276022,0.0066923453,0.00011656745,0.00020082359,0.00018262767,0.0012312904,0.0011502184,0.04498188,0.036632996,0.9077851],"study_design_scores_gemma":[0.00001440414,0.00008929718,0.0018814609,0.004981894,0.00012577944,0.001356538,0.0003425766,0.000529965,0.0005090303,0.0413858,0.9487226,0.000060657116],"about_ca_topic_score_codex":0.0023789688,"about_ca_topic_score_gemma":0.0034781564,"teacher_disagreement_score":0.00475346,"about_ca_system_score_codex":0.002484514,"about_ca_system_score_gemma":0.0020051254,"threshold_uncertainty_score":0.01802653},"labels":[],"label_agreement":null},{"id":"W2076413050","doi":"10.1002/path.1004","title":"Inflammatory myofibroblastic tumour (inflammatory pseudotumour) of the breast. Clinicopathological and genetic analysis of a case with evidence for clonality","year":2001,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"IgG4-Related and Inflammatory Diseases","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Hôtel-Dieu de Québec","funders":"","keywords":"Pathology; Immunophenotyping; Vimentin; Atypia; Biology; Myofibroblast; Neoplasm; Immunohistochemistry; Medicine; Immunology; Flow cytometry; Fibrosis","score_opus":0.03148112397447801,"score_gpt":0.3050031349039304,"score_spread":0.2735220109294524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076413050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99316484,0.0015339989,0.0011541018,0.00025042056,0.000029863184,0.00006289376,0.00008858182,0.000090258334,0.003625093],"genre_scores_gemma":[0.99845564,0.0003284066,0.0006149004,0.000052226016,0.00004864858,0.000014373664,0.000045074183,0.000006207475,0.00043442086],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997415,0.00003509633,0.000031574993,0.000056029407,0.00004602537,0.0000898071],"domain_scores_gemma":[0.9990308,0.0002934562,0.00028476238,0.00013478189,0.000055511708,0.00020074402],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035420107,0.0008324395,0.00031162016,0.0014383845,0.0009886982,0.0006444351,0.00038087083,0.0015045389,0.0017510542],"category_scores_gemma":[0.0025319757,0.000720623,0.00031998268,0.00092907593,0.0010205319,0.0006223014,0.0006006523,0.0005651914,0.0007879385],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016590324,0.000049007664,0.042107463,0.00010459007,0.000021046639,0.94004637,0.0004041051,0.00009140778,0.011682926,0.0002778921,0.00023576053,0.0048134746],"study_design_scores_gemma":[0.000025656365,0.00010513773,0.020997586,0.000009933372,0.000022785536,0.9757587,0.000110171306,0.00025762198,0.0019638801,0.00012551794,0.0006165478,0.000006446181],"about_ca_topic_score_codex":0.0011280569,"about_ca_topic_score_gemma":0.0013381745,"teacher_disagreement_score":0.0017510542,"about_ca_system_score_codex":0.0004561648,"about_ca_system_score_gemma":0.0002881322,"threshold_uncertainty_score":0.005857885},"labels":[],"label_agreement":null},{"id":"W2079427341","doi":"10.1002/path.4467","title":"Cancer‐associated fibroblasts predict poor outcome and promote periostin‐dependent invasion in oesophageal adenocarcinoma","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Esophageal Cancer Research and Treatment","field":"Medicine","cited_by":182,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"Medical Research Council; Imperial Experimental Cancer Medicine Centre; University of Southampton; Cancer Research UK; University Hospital Southampton NHS Foundation Trust","keywords":"Periostin; Cancer; Adenocarcinoma; Medicine; Cancer research; Oncology; Internal medicine; Cancer-Associated Fibroblasts; Biology; Pathology; Cancer cell; Genetics; Extracellular matrix","score_opus":0.02477981135227772,"score_gpt":0.3120261951483956,"score_spread":0.2872463837961179,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079427341","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99908996,0.0004620762,0.0001559221,0.000012850527,0.0000030656754,0.0000036591948,0.00006936225,0.0000052270484,0.00019782223],"genre_scores_gemma":[0.99957305,0.00011025175,0.00008182493,0.000004009349,0.0000029934538,0.0000028664267,0.00008694699,8.869619e-7,0.00013728694],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9999205,0.000019575778,0.000010339792,0.00001500047,0.000017598413,0.000016966647],"domain_scores_gemma":[0.99967253,0.00006935062,0.000114041024,0.000022183809,0.00004314159,0.000078722274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002150312,0.00019271437,0.00016336436,0.0004305419,0.00017106449,0.00029595796,0.0000896583,0.0002115424,0.0012285887],"category_scores_gemma":[0.00055046316,0.000116718606,0.0001971963,0.000272686,0.00014311365,0.00014139693,0.00017776106,0.0002570596,0.00017779175],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046259857,0.000026511512,0.9873624,0.000017323531,0.000028484097,0.00021403308,0.00003566313,0.0000672807,0.008959053,0.000011956126,0.00006158288,0.0027531777],"study_design_scores_gemma":[0.000003640814,0.00008039867,0.99799526,0.0000024022622,0.00002322933,0.00067260995,0.000061755716,0.00020360514,0.00081631175,0.000013709959,0.00012569172,0.000001495845],"about_ca_topic_score_codex":0.0011325931,"about_ca_topic_score_gemma":0.0018282884,"teacher_disagreement_score":0.0012285887,"about_ca_system_score_codex":0.000109742534,"about_ca_system_score_gemma":0.00010060074,"threshold_uncertainty_score":0.004110098},"labels":[],"label_agreement":null},{"id":"W2082749544","doi":"10.1002/path.4010","title":"Mediators of receptor tyrosine kinase activation in infantile fibrosarcoma: a Children's Oncology Group study","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Hippo pathway signaling and YAP/TAZ","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Cancer Institute","keywords":"Fibrosarcoma; Tyrosine kinase; Pediatric oncology; Medicine; Internal medicine; Receptor tyrosine kinase; Tyrosine-kinase inhibitor; Oncology; Cancer research; Receptor; Pathology; Cancer","score_opus":0.009090330559904549,"score_gpt":0.26652358033162915,"score_spread":0.2574332497717246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082749544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990578,0.0003368845,0.00004409968,0.000033937904,0.0000027619847,0.000009791601,0.0001717725,0.0000020209811,0.00034082276],"genre_scores_gemma":[0.99912065,0.00027060354,0.00008873345,0.000023075607,0.0000108303575,0.00001275539,0.0002881123,0.0000023094901,0.00018289324],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997445,0.000049651237,0.000025805366,0.00006755402,0.000049928633,0.000062569496],"domain_scores_gemma":[0.9995215,0.00006014353,0.00019321237,0.000032677806,0.000068203044,0.00012421604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035348744,0.0004324775,0.0004260344,0.0008553112,0.00040416542,0.00039528208,0.00023415235,0.00043120174,0.00089133735],"category_scores_gemma":[0.00055005454,0.00020520088,0.00048531956,0.0008516987,0.00028482327,0.00022916778,0.00029970604,0.00041651455,0.00017558612],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037963898,0.00009521068,0.9923969,0.000034510165,0.00006717371,0.0025570155,0.00019496467,0.00008073053,0.0018076662,0.00006949929,0.00015150465,0.002165161],"study_design_scores_gemma":[0.000029936093,0.0004303053,0.9920431,0.000012901018,0.000095423304,0.0055218874,0.00026417768,0.000120932746,0.0005358028,0.000023735052,0.0009156982,0.0000060402685],"about_ca_topic_score_codex":0.0048567518,"about_ca_topic_score_gemma":0.0031480556,"teacher_disagreement_score":0.0048567518,"about_ca_system_score_codex":0.00058733195,"about_ca_system_score_gemma":0.000566665,"threshold_uncertainty_score":0.009656966},"labels":[],"label_agreement":null},{"id":"W2084520414","doi":"10.1002/path.2577","title":"β1 integrin/FAK/ERK signalling pathway is essential for human fetal islet cell differentiation and survival","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Diabetes Association","keywords":"Integrin; Focal adhesion; MAPK/ERK pathway; Cell biology; Islet; Biology; Kinase; Signal transduction; Cancer research; Endocrinology; Cell; Insulin","score_opus":0.025908086548762158,"score_gpt":0.3175119059936661,"score_spread":0.29160381944490393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084520414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899266,0.0058335797,0.0014851707,0.00015270684,0.000024333565,0.0000121788735,0.00047058176,0.00005163634,0.0020432652],"genre_scores_gemma":[0.99395376,0.0025807382,0.0009306774,0.000038465496,0.000008039418,0.000018479654,0.00061529415,0.000010439213,0.001844153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991643,0.000009587334,0.0000075346416,0.000013984706,0.000024366627,0.000028155344],"domain_scores_gemma":[0.99995077,0.000006743467,0.000015972255,0.0000045099573,0.00000912969,0.000012877566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006303871,0.00018431929,0.00014528111,0.000122039295,0.00014824742,0.0002322214,0.00006431887,0.00012918093,0.0014029118],"category_scores_gemma":[0.00008533608,0.0001018687,0.00015534471,0.00008217517,0.000072309485,0.00011622128,0.00014703278,0.00026781225,0.00038915267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017919006,0.000020172842,0.0010424166,0.00005486273,0.0000045313536,0.00017451524,0.00002714628,0.0000560064,0.9938035,0.00010519985,0.00012573232,0.0044066985],"study_design_scores_gemma":[0.0000233509,0.00025149636,0.100114286,0.00003114533,0.000033862983,0.0023453655,0.00015239135,0.0012476471,0.88411605,0.0001471317,0.01152651,0.000010811406],"about_ca_topic_score_codex":0.00062797905,"about_ca_topic_score_gemma":0.00056628004,"teacher_disagreement_score":0.0014029118,"about_ca_system_score_codex":0.00018524236,"about_ca_system_score_gemma":0.00017038615,"threshold_uncertainty_score":0.00469321},"labels":[],"label_agreement":null},{"id":"W2086768605","doi":"10.1002/path.1479","title":"Differential expression of matrilysin‐1 (MMP‐7), 92 kD gelatinase (MMP‐9), and metalloelastase (MMP‐12) in oral verrucous and squamous cell cancer","year":2003,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Oral Health Pathology and Treatment","field":"Dentistry","cited_by":164,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Hospital Research Foundation; Helsingin ja Uudenmaan Sairaanhoitopiiri","keywords":"Matrix metalloproteinase; Verrucous carcinoma; Pathology; Matrilysin; Laminin; Extracellular matrix; Basement membrane; Cancer; Gelatinase A; Epithelium; Cancer cell; Biology; Cancer research; Immunohistochemistry; Medicine; Carcinoma; Internal medicine; Cell biology","score_opus":0.020760607061392246,"score_gpt":0.30828979177642635,"score_spread":0.2875291847150341,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086768605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985708,0.0008915046,0.0000842683,0.00000529875,0.000003771622,0.0000063836237,0.000062363804,0.0000041174444,0.00037136246],"genre_scores_gemma":[0.9986052,0.00047043175,0.00016666074,0.0000071633526,0.0000052709197,0.000013037629,0.000163674,0.0000016093297,0.00056702946],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998448,0.000015687898,0.000016641652,0.000026082205,0.000048069516,0.000048682596],"domain_scores_gemma":[0.9998271,0.00003619731,0.000037963157,0.000012391693,0.000036489175,0.00004986086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015406414,0.000116794545,0.00023664001,0.00088438473,0.00018783486,0.00039652982,0.0000947093,0.00030143632,0.0005652781],"category_scores_gemma":[0.00025129865,0.0001556537,0.00016366932,0.0006422284,0.00023459124,0.00021080466,0.00017211652,0.00017108489,0.0001497023],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000813616,0.00006718095,0.07612634,0.00014333289,0.000035302583,0.0009968977,0.0004419446,0.00005305553,0.9159075,0.00010084093,0.000057910285,0.0052561983],"study_design_scores_gemma":[0.00001707345,0.00043172602,0.9389755,0.00001197206,0.000055023233,0.0029799466,0.0008051912,0.00037903877,0.054762125,0.000079502155,0.0014904934,0.0000125141905],"about_ca_topic_score_codex":0.00081995706,"about_ca_topic_score_gemma":0.000801422,"teacher_disagreement_score":0.00088438473,"about_ca_system_score_codex":0.00015466954,"about_ca_system_score_gemma":0.00013839785,"threshold_uncertainty_score":0.0018910766},"labels":[],"label_agreement":null},{"id":"W2087126960","doi":"10.1002/path.3013","title":"Cytokinesis, ploidy and aneuploidy","year":2011,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Terry Fox Foundation; Cancer Research Society","keywords":"Cytokinesis; Midbody; Biology; Septin; Cell biology; Cell division; Cleavage furrow; Mitosis; Ploidy; Genetics; Cell","score_opus":0.02625998698634152,"score_gpt":0.28696929908849633,"score_spread":0.2607093121021548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087126960","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002398969,0.99735343,0.0002849648,0.00021082982,0.00016865917,0.0000041606545,0.000015892634,0.000010789756,0.0017114104],"genre_scores_gemma":[0.0013924326,0.9966973,0.00027852182,0.00011893847,0.00019414978,0.000008013082,0.0000306962,0.000002130383,0.0012779196],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998161,0.00002137138,0.000022746937,0.00004302809,0.00008141037,0.000015367748],"domain_scores_gemma":[0.9997656,0.00009749178,0.000038295166,0.000009835311,0.000060782768,0.000028041773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038661476,0.0009160859,0.00129846,0.002122341,0.0003624024,0.0008820557,0.0007727584,0.0012627147,0.003096613],"category_scores_gemma":[0.00052298326,0.00030729244,0.00027828105,0.0017628319,0.0007493504,0.0011887896,0.00056338584,0.0014398593,0.0023782267],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000796797,0.000060335777,0.00024598,0.008306693,0.00004343387,0.00037958592,0.00005583086,0.0003620254,0.006337664,0.0044277436,0.019414019,0.9602871],"study_design_scores_gemma":[0.0000119656,0.000068639994,0.0013832311,0.0012136125,0.000045188117,0.0028579116,0.00005769119,0.00009522733,0.0023397445,0.0030770658,0.9888291,0.000020677384],"about_ca_topic_score_codex":0.00091237767,"about_ca_topic_score_gemma":0.0011630916,"teacher_disagreement_score":0.003096613,"about_ca_system_score_codex":0.0007625471,"about_ca_system_score_gemma":0.0005864171,"threshold_uncertainty_score":0.010359168},"labels":[],"label_agreement":null},{"id":"W2088177247","doi":"10.1002/path.2449","title":"Herpes simplex virus type 1 DNA is located within Alzheimer's disease amyloid plaques","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":456,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Henry Smith Charity; Alzheimer Society","keywords":"Herpes simplex virus; Virology; Alzheimer's disease; Virus; Senile plaques; Pathology; Biology; Amyloid (mycology); Neurofibrillary tangle; Apolipoprotein E; Disease; Medicine","score_opus":0.059727244547533975,"score_gpt":0.33426776438991884,"score_spread":0.27454051984238487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088177247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98805165,0.008051163,0.0020541968,0.00004553642,0.000026899383,0.00001487209,0.0001503848,0.00006026529,0.0015450448],"genre_scores_gemma":[0.9955865,0.0020367461,0.0012901668,0.000021809872,0.000020924062,0.000012185963,0.00016382571,0.000006751366,0.0008610291],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998307,0.000018849933,0.000012459258,0.00006249832,0.000049527494,0.000025761436],"domain_scores_gemma":[0.9998023,0.000037503127,0.000076553595,0.000016658696,0.000034398956,0.000032587104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011851982,0.0002818158,0.00024351898,0.0008512087,0.00024048369,0.00041697317,0.0001490801,0.00033570663,0.0009327728],"category_scores_gemma":[0.0004379416,0.00026608945,0.00011065507,0.00036568343,0.0003220955,0.0002624537,0.0002788954,0.0002218075,0.00040424924],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016057829,0.000012607979,0.0115195615,0.00010837712,0.000032909822,0.0003569441,0.00022317677,0.000034857294,0.98040557,0.000173893,0.000056369678,0.006915172],"study_design_scores_gemma":[0.00004970404,0.00078845856,0.4762036,0.00013397072,0.00015784599,0.015180638,0.0007266728,0.00058885256,0.48867887,0.0020155828,0.01544108,0.0000346737],"about_ca_topic_score_codex":0.0005851218,"about_ca_topic_score_gemma":0.0004438355,"teacher_disagreement_score":0.0009327728,"about_ca_system_score_codex":0.00024232038,"about_ca_system_score_gemma":0.00016111108,"threshold_uncertainty_score":0.003120482},"labels":[],"label_agreement":null},{"id":"W2088953993","doi":"10.1002/path.2633","title":"Genome‐wide transcriptome analyses reveal p53 inactivation mediated loss of miR‐34a expression in malignant peripheral nerve sheath tumours","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Neurofibromatosis and Schwannoma Cases","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital","funders":"National Cancer Institute; University of Minnesota; U.S. Department of Defense","keywords":"Transcriptome; Peripheral; Peripheral nerve; Biology; Genome; microRNA; Gene expression; Cancer research; Pathology; Gene; Medicine; Genetics; Anatomy; Internal medicine","score_opus":0.03509237934470754,"score_gpt":0.3092162538015191,"score_spread":0.2741238744568116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088953993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99454194,0.0013965938,0.0017742901,0.000046331937,0.000010322536,0.000008931332,0.0016506775,0.000057230365,0.00051370735],"genre_scores_gemma":[0.99396634,0.00077608525,0.0014947591,0.000047206027,0.000007069005,0.000024310542,0.0028111362,0.000019838451,0.00085311104],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998951,0.000008597806,0.0000067857586,0.00003317711,0.000034599034,0.000021733942],"domain_scores_gemma":[0.99987614,0.000028338949,0.000051955954,0.000009481358,0.000016800395,0.000017241931],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104732164,0.0001478551,0.00024683552,0.00040197044,0.00016398003,0.00033581036,0.00008890908,0.00019701775,0.00066047045],"category_scores_gemma":[0.00020796458,0.00012736641,0.00029656469,0.00038903786,0.00013085449,0.00013078464,0.00018756013,0.0002823214,0.00024693864],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027203708,0.00001279394,0.010283717,0.00005396178,0.00004039462,0.00017804359,0.00006994944,0.00017051886,0.9851518,0.00003736704,0.00012133124,0.0036081653],"study_design_scores_gemma":[0.000020296047,0.00024993424,0.8230648,0.00001705123,0.00016704001,0.0017372336,0.00023551408,0.0032315825,0.166344,0.00018438912,0.004726465,0.00002168659],"about_ca_topic_score_codex":0.00043512922,"about_ca_topic_score_gemma":0.0005769336,"teacher_disagreement_score":0.00066047045,"about_ca_system_score_codex":0.00011771316,"about_ca_system_score_gemma":0.000108268316,"threshold_uncertainty_score":0.0022095442},"labels":[],"label_agreement":null},{"id":"W2089098303","doi":"10.1002/path.2235","title":"Microsatellite unstable colorectal cancer cell lines with truncating TGFβRII mutations remain sensitive to endogenous TGFβ","year":2007,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"TGF-β signaling in diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Transforming growth factor; Colorectal cancer; Endogeny; Microsatellite instability; Cancer research; Biology; Mutation; Cancer; Genetics; Microsatellite; Gene; Cell biology; Allele; Endocrinology","score_opus":0.01173878854035757,"score_gpt":0.25859650352809566,"score_spread":0.2468577149877381,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089098303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99237144,0.0010963988,0.002448147,0.00014495415,0.00004635483,0.000084228195,0.0015643184,0.00015614528,0.0020879689],"genre_scores_gemma":[0.986451,0.00087446684,0.0029481554,0.00011909222,0.0000146237535,0.00013480715,0.0036933413,0.000046875382,0.005717642],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995877,0.000039850813,0.00008120027,0.000068668545,0.00015459678,0.000068068504],"domain_scores_gemma":[0.99951756,0.00009009826,0.00011003544,0.00014019442,0.000065230226,0.00007703118],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020550478,0.0003494051,0.00046628082,0.0003938109,0.00026489366,0.00044969143,0.00022361819,0.00024935327,0.0020957883],"category_scores_gemma":[0.00025841902,0.00021717284,0.0003093433,0.0004684776,0.00030179947,0.00016247113,0.00025463785,0.0006316087,0.001016018],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000085959255,0.000038510952,0.0009789505,0.000032544383,0.000008974286,0.00015204948,0.000058712165,0.00005132681,0.9972383,0.00008433782,0.0001020845,0.0011683243],"study_design_scores_gemma":[0.000027641896,0.0012092779,0.035026778,0.000010589408,0.000041414987,0.0028159881,0.0002789098,0.0015555375,0.95203584,0.00007329087,0.006904987,0.000019684176],"about_ca_topic_score_codex":0.0019679815,"about_ca_topic_score_gemma":0.0039064763,"teacher_disagreement_score":0.0020957883,"about_ca_system_score_codex":0.00025676374,"about_ca_system_score_gemma":0.00031234504,"threshold_uncertainty_score":0.0070111156},"labels":[],"label_agreement":null},{"id":"W2089434848","doi":"10.1002/1096-9896(2000)9999:9999<::aid-path744>3.0.co;2-q","title":"Nuclear cytometric changes in breast carcinogenesis","year":2001,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Breast Cancer Treatment Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"KWF Kankerbestrijding","keywords":"Ductal carcinoma; Pathology; Breast cancer; Hyperplasia; Atypical hyperplasia; Carcinoma in situ; Carcinogenesis; Carcinoma; Cancer; Medicine; Biology; Internal medicine","score_opus":0.012225488524863508,"score_gpt":0.24763842874931222,"score_spread":0.2354129402244487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089434848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96436733,0.005368899,0.02502935,0.00008613704,0.000026188567,0.000063217354,0.00024208052,0.00017094934,0.0046457704],"genre_scores_gemma":[0.9869687,0.001468513,0.0093252985,0.000043950604,0.000014921075,0.000056997174,0.00025589566,0.000019421483,0.001846382],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999689,0.000056937737,0.000020759011,0.00007435109,0.00013096422,0.000028047969],"domain_scores_gemma":[0.9995803,0.00011256849,0.00011942479,0.00003337545,0.00011760423,0.00003674214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037405887,0.00028289045,0.00015020647,0.0012511446,0.0002759255,0.00038869088,0.00020315287,0.0003221575,0.0015433391],"category_scores_gemma":[0.00079227524,0.0001415163,0.00013655827,0.0005503611,0.00048452427,0.0004420257,0.00033767457,0.00028870415,0.00043897794],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015647778,0.000027673808,0.021627972,0.00008948272,0.000013217232,0.00007069417,0.00018931249,0.00022171743,0.96204984,0.0004040427,0.000044578555,0.015105087],"study_design_scores_gemma":[0.000015034764,0.0005732806,0.32533643,0.00005051015,0.00006329364,0.002061677,0.0005526741,0.0029003697,0.66062254,0.0011794779,0.0066013783,0.000043364274],"about_ca_topic_score_codex":0.0006685357,"about_ca_topic_score_gemma":0.0006396113,"teacher_disagreement_score":0.0015433391,"about_ca_system_score_codex":0.00046252226,"about_ca_system_score_gemma":0.00020619783,"threshold_uncertainty_score":0.005163014},"labels":[],"label_agreement":null},{"id":"W2090071430","doi":"10.1002/path.1486","title":"Expression of the cell death genes BNip3 and NIX in ductal carcinoma <i>in situ</i> of the breast; correlation of BNip3 levels with necrosis and grade","year":2003,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cell death mechanisms and regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Ductal carcinoma; Pathology; Apocrine; Necrosis; Biology; Lesion; Programmed cell death; In situ; Metaplastic carcinoma; Carcinoma; Breast cancer; Cancer research; Apoptosis; Medicine; Cancer; Chemistry","score_opus":0.008370314370721839,"score_gpt":0.2040872685156078,"score_spread":0.19571695414488596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090071430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99926716,0.00025665588,0.0001433154,0.0000065666372,0.0000010129944,0.0000035066314,0.00007497866,0.000002989403,0.00024369382],"genre_scores_gemma":[0.99875236,0.00023928813,0.00023992293,0.0000071557906,0.0000017777568,0.000009674252,0.00020351006,0.0000023822229,0.00054401695],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999905,0.000013595325,0.0000089267605,0.000017867565,0.000029426514,0.000025192141],"domain_scores_gemma":[0.9997819,0.00004772392,0.00006716257,0.000017084392,0.000047093934,0.00003903882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012937201,0.000121971934,0.0001535662,0.00044447213,0.0001407935,0.00023108655,0.000068935944,0.00016659622,0.0005998551],"category_scores_gemma":[0.00028147668,0.0001284823,0.00007493636,0.00028357524,0.00025344884,0.000118580414,0.00013662431,0.00023319545,0.00017651795],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001146806,0.000045129116,0.13445562,0.00006356765,0.000031309704,0.0003645886,0.00018049787,0.00010405976,0.8599949,0.000047410605,0.00004258834,0.0035235768],"study_design_scores_gemma":[0.00001754915,0.00027767368,0.870142,0.000006293183,0.000037587793,0.0018734417,0.00023854473,0.00044973893,0.12607181,0.00007818146,0.0007994661,0.000007774335],"about_ca_topic_score_codex":0.00091088586,"about_ca_topic_score_gemma":0.0011404994,"teacher_disagreement_score":0.00091088586,"about_ca_system_score_codex":0.00018625293,"about_ca_system_score_gemma":0.00008023401,"threshold_uncertainty_score":0.0020067096},"labels":[],"label_agreement":null},{"id":"W2090462236","doi":"10.1002/path.1564","title":"Model of the early development of diffuse gastric cancer in E‐cadherin mutation carriers and its implications for patient screening","year":2004,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":269,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Cancer; CDH1; Signet ring cell carcinoma; Gastrectomy; Pathology; Germline mutation; Medicine; Helicobacter pylori; Antrum; Duodenal cancer; Internal medicine; Stomach; Gastroenterology; Adenocarcinoma; Mutation; Biology; Cadherin; Gene; Genetics","score_opus":0.019182976731571398,"score_gpt":0.268249263937348,"score_spread":0.2490662872057766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090462236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9666169,0.0011883246,0.02173626,0.0010735854,0.00003601025,0.00008158941,0.00026615485,0.00037942547,0.008621727],"genre_scores_gemma":[0.9929925,0.00045035957,0.0044287853,0.00009224124,0.00001172197,0.000040817,0.00015129431,0.000009461162,0.001822727],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9998306,0.000057003672,0.0000066605885,0.0000435353,0.000033156502,0.000029004465],"domain_scores_gemma":[0.99974996,0.00009523317,0.00003680579,0.000031618503,0.000023490065,0.000062850035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030202372,0.00040072642,0.00029061572,0.0007072584,0.00024423955,0.0005618313,0.00046712515,0.0005540681,0.0030307553],"category_scores_gemma":[0.00076378346,0.00020554241,0.00021470955,0.0002443197,0.00053603615,0.00051001966,0.00036003135,0.0004267494,0.000733984],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00553361,0.0017434625,0.2342224,0.00046803404,0.00012404742,0.025809057,0.0012242908,0.018814245,0.56756246,0.08066669,0.0040402194,0.059791535],"study_design_scores_gemma":[0.0013346605,0.01535205,0.2684831,0.00020421998,0.00056733505,0.13312651,0.0014167568,0.27687797,0.21553001,0.053953554,0.032914393,0.00023953778],"about_ca_topic_score_codex":0.0012705904,"about_ca_topic_score_gemma":0.0009331662,"teacher_disagreement_score":0.0030307553,"about_ca_system_score_codex":0.0004067702,"about_ca_system_score_gemma":0.0005139021,"threshold_uncertainty_score":0.010138869},"labels":[],"label_agreement":null},{"id":"W2091338613","doi":"10.1002/path.2993","title":"Silencing disease genes in the laboratory and the clinic","year":2011,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":456,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; U.S. Public Health Service; National Institutes of Health","keywords":"Gene silencing; Disease; Gene; Genetics; Biology; Medicine; Pathology","score_opus":0.04104634198612099,"score_gpt":0.32301404515626503,"score_spread":0.281967703170144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091338613","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003171548,0.995719,0.0008759782,0.00082106394,0.00029582976,0.000008134058,0.000010146601,0.000022872655,0.0019297553],"genre_scores_gemma":[0.0020293908,0.9939931,0.0011374393,0.00051311404,0.0003026612,0.00002581032,0.000017234503,0.000004414745,0.0019767156],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9996246,0.0000808344,0.00004343005,0.000053169606,0.00016967283,0.00002830967],"domain_scores_gemma":[0.9996685,0.00015818083,0.00003790414,0.0000155929,0.000081813465,0.000037965277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010584173,0.0008571228,0.0012453158,0.0014311253,0.0003483028,0.0013078912,0.000900644,0.002267253,0.002361754],"category_scores_gemma":[0.0007035888,0.00034058015,0.00034687424,0.0010432717,0.0011116025,0.0019567432,0.0007470339,0.0020682546,0.002982042],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006970673,0.00009145683,0.00017361384,0.006070069,0.000041511128,0.0005162733,0.00013845215,0.00048093768,0.01832694,0.014679918,0.022612892,0.93679816],"study_design_scores_gemma":[0.000018339164,0.00012705695,0.0005017585,0.0011520257,0.000035768982,0.0026011523,0.00006952485,0.00013508255,0.0036790802,0.004246973,0.98740816,0.000025014058],"about_ca_topic_score_codex":0.0006362164,"about_ca_topic_score_gemma":0.0012144152,"teacher_disagreement_score":0.002361754,"about_ca_system_score_codex":0.0009370575,"about_ca_system_score_gemma":0.00080271135,"threshold_uncertainty_score":0.007900834},"labels":[],"label_agreement":null},{"id":"W2092739326","doi":"10.1002/path.3975","title":"Reactive murine lymph nodes uniquely permit parenchymal access for T cells that enter via the afferent lymphatics","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Multiple Sclerosis Research Studies","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carbon Engineering (Canada)","funders":"","keywords":"Lymph node stromal cell; Lymphatic system; Lymph node; Lymph; High endothelial venules; Parenchyma; Pathology; Axillary lymph nodes; Lymphatic Endothelium; Medicine; Biology; Anatomy; Internal medicine; Metastasis","score_opus":0.1697525755099964,"score_gpt":0.3631690763047707,"score_spread":0.1934165007947743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092739326","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893833,0.0008162454,0.0063571106,0.000060725055,0.000050084633,0.00009310549,0.00036571288,0.00022908373,0.002644606],"genre_scores_gemma":[0.9859525,0.000654921,0.009303454,0.00005045712,0.000021057604,0.00011966235,0.00042234862,0.000049200462,0.0034264524],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99964523,0.0000727983,0.0000355589,0.00009000594,0.00006419253,0.00009220516],"domain_scores_gemma":[0.9996165,0.00006425622,0.000111187546,0.00010596394,0.000023871473,0.000078217075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034609338,0.0007347689,0.0002797753,0.000582785,0.000282709,0.0005213609,0.0003310772,0.00046533547,0.0022415987],"category_scores_gemma":[0.0003188067,0.00033601018,0.0002446689,0.00018246542,0.0005157396,0.00052909635,0.00045701084,0.0011623014,0.00083360996],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030069478,0.00007813474,0.00037492515,0.00007379251,0.0000034513907,0.00009664634,0.00005232747,0.00010043191,0.99711585,0.0005498522,0.00003745308,0.0012163185],"study_design_scores_gemma":[0.000113430695,0.0020248368,0.0033554921,0.00003618906,0.000034513207,0.0010351875,0.000087060274,0.0009183602,0.9877858,0.00051178073,0.0040812,0.000016160566],"about_ca_topic_score_codex":0.00021574898,"about_ca_topic_score_gemma":0.00060557685,"teacher_disagreement_score":0.0022415987,"about_ca_system_score_codex":0.00023869459,"about_ca_system_score_gemma":0.0002866813,"threshold_uncertainty_score":0.00749892},"labels":[],"label_agreement":null},{"id":"W2093286146","doi":"10.1002/path.1106","title":"Reduction of hypoxia‐inducible heme oxygenase‐1 in the myocardium after left ventricular mechanical support","year":2002,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cardiac Arrest and Resuscitation","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Endocardium; Cardiology; Heme oxygenase; Internal medicine; Dilated cardiomyopathy; Heart failure; Hypoxia (environmental); Myocyte; Medicine; Heart disease; In vivo; Pathogenesis; Biology; Chemistry; Heme; Enzyme; Biochemistry; Oxygen","score_opus":0.018305479714518697,"score_gpt":0.2612004547260734,"score_spread":0.2428949750115547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093286146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99795735,0.0015212887,0.00028320856,0.000021731206,0.000008526293,0.0000036739743,0.000014683233,0.0000052751866,0.0001842007],"genre_scores_gemma":[0.9991634,0.00040109426,0.00018042677,0.000019648682,0.000012930694,0.0000061468572,0.000049997027,0.0000014027644,0.00016486224],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999565,0.0000103067305,0.000003336673,0.000008541744,0.000009303952,0.0000120617115],"domain_scores_gemma":[0.99992824,0.000014319995,0.000027746562,0.0000064009273,0.0000063293533,0.000016964208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012693006,0.00011734445,0.0001504193,0.000092864524,0.00008815552,0.00013877924,0.00007674921,0.00015483274,0.00042790323],"category_scores_gemma":[0.00014912403,0.00007654915,0.00010727281,0.000055241733,0.00015930363,0.00010319675,0.00009706365,0.00018319217,0.00007544767],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005592517,0.000044184646,0.007033962,0.000066185516,0.000010573464,0.00032532198,0.000054991982,0.000049980365,0.98656404,0.000034893146,0.00003679137,0.0052198214],"study_design_scores_gemma":[0.00012028009,0.0052787694,0.4754356,0.000030753035,0.00008237367,0.0038993428,0.00022883006,0.00088220416,0.51206726,0.00017021455,0.0017936839,0.000010741734],"about_ca_topic_score_codex":0.000085677726,"about_ca_topic_score_gemma":0.0001093893,"teacher_disagreement_score":0.00042790323,"about_ca_system_score_codex":0.00009621281,"about_ca_system_score_gemma":0.000062697756,"threshold_uncertainty_score":0.0014314651},"labels":[],"label_agreement":null},{"id":"W2093353667","doi":"10.1002/path.2805","title":"Immunohistochemical expression of conjugating UGT1A‐derived isoforms in normal and tumoral drug‐metabolizing tissues in humans","year":2010,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pharmacogenetics and Drug Metabolism","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Gene isoform; Biology; Glucuronidation; Drug metabolism; Glucuronosyltransferase; Isozyme; Carcinogenesis; Xenobiotic; Biochemistry; In vitro; Enzyme; Microsome; Gene","score_opus":0.043729141937628314,"score_gpt":0.39713026886093994,"score_spread":0.3534011269233116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093353667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9837441,0.006150857,0.0042454717,0.00006785189,0.000022278531,0.00004166403,0.00045364737,0.000079500925,0.0051946263],"genre_scores_gemma":[0.9934001,0.0020689953,0.0020439294,0.000043324573,0.000018936655,0.000029576364,0.0004459176,0.000013871076,0.00193535],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987197,0.000021195394,0.000009971192,0.000046590416,0.000027460652,0.000022779208],"domain_scores_gemma":[0.9998791,0.000023513428,0.00003402572,0.000013456142,0.000022990022,0.000026931144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025321794,0.00017579301,0.00012450962,0.0007504298,0.00011724959,0.00020718183,0.00013363251,0.00020299024,0.0017753857],"category_scores_gemma":[0.00019215731,0.00019102507,0.00014723494,0.00034979807,0.00024741233,0.00016429978,0.00013593753,0.00015008492,0.00033623385],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010121907,0.00007586161,0.059436377,0.00021284276,0.00009041582,0.0021908924,0.00022333486,0.00013729665,0.92047143,0.00051459414,0.0005016392,0.015133147],"study_design_scores_gemma":[0.000072189476,0.0010649918,0.7899362,0.000050121827,0.00022869592,0.019222734,0.00047937775,0.001693985,0.17152038,0.00052495074,0.015172675,0.000033684624],"about_ca_topic_score_codex":0.000540633,"about_ca_topic_score_gemma":0.00048070672,"teacher_disagreement_score":0.0017753857,"about_ca_system_score_codex":0.00011712645,"about_ca_system_score_gemma":0.0000716228,"threshold_uncertainty_score":0.005939245},"labels":[],"label_agreement":null},{"id":"W2093708109","doi":"10.1002/path.3986","title":"ROR2 is a novel prognostic biomarker and a potential therapeutic target in leiomyosarcoma and gastrointestinal stromal tumour","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Gastrointestinal Tumor Research and Treatment","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital","funders":"National Cancer Institute; National Human Genome Research Institute; Howard Hughes Medical Institute; National Science Foundation","keywords":"GiST; Leiomyosarcoma; Immunohistochemistry; Stromal cell; Receptor tyrosine kinase; Cancer research; Sarcoma; Biomarker; Pathological; Pathology; Soft tissue; Biology; Soft tissue sarcoma; Medicine; Oncology; Internal medicine; Receptor","score_opus":0.033948780317932144,"score_gpt":0.3024001884476225,"score_spread":0.26845140812969037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093708109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9679603,0.02427105,0.0032853915,0.00093757,0.000050994728,0.00004384812,0.00027932404,0.00013650555,0.003034944],"genre_scores_gemma":[0.99388796,0.0019436945,0.0026578254,0.0000797078,0.000048606747,0.000031890344,0.00039603503,0.000006857008,0.0009474563],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99983835,0.000054090207,0.000015045856,0.000028027076,0.000041404077,0.0000231796],"domain_scores_gemma":[0.99985456,0.00003569302,0.000057501908,0.00001012184,0.000016223597,0.000025890793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045520285,0.00026558226,0.00045428582,0.0005609647,0.00012173582,0.00030798846,0.00016533387,0.0003697697,0.0010702402],"category_scores_gemma":[0.00055815454,0.00013225594,0.00017200365,0.00035269256,0.00025799216,0.00029382238,0.00017780259,0.00027788867,0.00040650528],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050919685,0.00035123737,0.15030539,0.0007137389,0.00018362456,0.005423469,0.00021121095,0.002977545,0.64048296,0.0015142773,0.0022579564,0.19048657],"study_design_scores_gemma":[0.0006750269,0.008816483,0.53574324,0.00014760198,0.0005843927,0.042142488,0.00042320127,0.01881892,0.33609754,0.0026708299,0.053757295,0.00012301738],"about_ca_topic_score_codex":0.00026199143,"about_ca_topic_score_gemma":0.00046334983,"teacher_disagreement_score":0.0010702402,"about_ca_system_score_codex":0.00029971774,"about_ca_system_score_gemma":0.00020412372,"threshold_uncertainty_score":0.0035802722},"labels":[],"label_agreement":null},{"id":"W2093805839","doi":"10.1002/path.2047","title":"Senescence and serration: a new twist to an old tale","year":2006,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Senescence; Carcinogenesis; Biology; Microsatellite instability; Cancer research; KRAS; Telomere; Phenotype; DNA methylation; Gene silencing; Oncogene; Genetics; Cell cycle; Mutation; Cancer; Gene; Gene expression","score_opus":0.06010069662232102,"score_gpt":0.3634659774433322,"score_spread":0.30336528082101116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093805839","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007936279,0.9967892,0.00010915424,0.001498739,0.00079550495,0.0000013278844,0.000004427603,0.0000070452998,0.00071531703],"genre_scores_gemma":[0.00077773375,0.99472445,0.00018790552,0.0013390981,0.0015983046,0.0000034535774,0.000010460866,0.0000027982328,0.0013558407],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99974936,0.000056702527,0.0000355738,0.000044278302,0.00009260005,0.000021560965],"domain_scores_gemma":[0.9990827,0.0005060333,0.000058572048,0.000037937967,0.00020491946,0.00010972335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009093024,0.000763241,0.0015704556,0.002060097,0.0005438539,0.0015841532,0.00086287904,0.0020181946,0.0033267667],"category_scores_gemma":[0.0013552435,0.00023812655,0.0003649879,0.0016704338,0.0017054789,0.0041097207,0.0008941316,0.003578867,0.0019354491],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012429677,0.000066658984,0.00028485537,0.005882072,0.000052578693,0.0006176813,0.00025555294,0.00019671606,0.0016155633,0.011685938,0.10324335,0.8759746],"study_design_scores_gemma":[0.000013244426,0.000058830978,0.00042459555,0.0013131468,0.000018308256,0.0018018966,0.0001510764,0.000029905756,0.0001548657,0.0044096713,0.99160963,0.000014806301],"about_ca_topic_score_codex":0.0007514524,"about_ca_topic_score_gemma":0.0017359417,"teacher_disagreement_score":0.0033267667,"about_ca_system_score_codex":0.00082125165,"about_ca_system_score_gemma":0.0011046297,"threshold_uncertainty_score":0.011129141},"labels":[],"label_agreement":null},{"id":"W2093883883","doi":"10.1002/path.1818","title":"Airway proteoglycans are differentially altered in fatal asthma","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Proteoglycans and glycosaminoglycans research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Children's Hospital","funders":"","keywords":"Versican; Decorin; Biglycan; Lumican; Asthma; Airway; Extracellular matrix; Medicine; Pathology; Proteoglycan; Basement membrane; Immunohistochemistry; Immunology; Biology; Cell biology; Surgery","score_opus":0.013125839139531166,"score_gpt":0.2730863969644357,"score_spread":0.2599605578249045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093883883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992551,0.00032734385,0.00007456617,0.000011265325,0.000003409084,0.000003330754,0.000045428627,0.0000072779644,0.00027215018],"genre_scores_gemma":[0.99940956,0.00014521863,0.00006796621,0.0000142552035,0.0000075444873,0.00000375607,0.00013968842,0.0000027303927,0.00020926903],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998023,0.000028129532,0.000015851,0.000039769682,0.000048941576,0.00006503045],"domain_scores_gemma":[0.9996573,0.00003098066,0.00013827615,0.000016365224,0.000041638297,0.00011556326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013860149,0.00031147106,0.00040555676,0.0009806644,0.00031234144,0.0003902389,0.00013259499,0.00047643547,0.0012056873],"category_scores_gemma":[0.00046370795,0.00023813834,0.0002363685,0.00029110405,0.000371149,0.0001744214,0.00039241437,0.00032935422,0.00028550078],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002429324,0.00008138089,0.5390077,0.000085724,0.00013563373,0.005947839,0.00064703496,0.00013697469,0.44124922,0.00010524521,0.00023601805,0.00993789],"study_design_scores_gemma":[0.0000067310757,0.00013583312,0.9942866,0.0000041636695,0.000022111642,0.0017968763,0.00015463459,0.00010720718,0.0032387448,0.000037628204,0.00020646563,0.0000030022384],"about_ca_topic_score_codex":0.00065163546,"about_ca_topic_score_gemma":0.0005501159,"teacher_disagreement_score":0.0012056873,"about_ca_system_score_codex":0.00016900498,"about_ca_system_score_gemma":0.000061058265,"threshold_uncertainty_score":0.0040333867},"labels":[],"label_agreement":null},{"id":"W2097094775","doi":"10.1002/path.2848","title":"Subtype‐specific mutation of <i>PPP2R1A</i> in endometrial and ovarian carcinomas","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Notre-Dame; Canada's Michael Smith Genome Sciences Centre; Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"University of British Columbia; Medical Research and Materiel Command; Canadian Institutes of Health Research; Ovarian Cancer Canada","keywords":"Ovarian carcinomas; Ovarian cancer; Oncology; Carcinoma; Ovarian carcinoma; Endometrial cancer; Endometrium; Medicine; Internal medicine; Biology; Cancer research; Cancer","score_opus":0.02594221278827001,"score_gpt":0.24377887605822554,"score_spread":0.21783666326995554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097094775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977246,0.00082838594,0.00026545688,0.00002784078,0.00000680277,0.000008018198,0.00015799177,0.000008139287,0.0009727963],"genre_scores_gemma":[0.9993837,0.00022101989,0.00012576004,0.000017053386,0.0000044814424,0.000003052664,0.00009666728,0.0000034971642,0.00014472766],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99976677,0.0000388136,0.000039477236,0.000054868437,0.00006098746,0.000039071896],"domain_scores_gemma":[0.9996044,0.00007974846,0.00014451933,0.000052870007,0.000052188512,0.00006627427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003122078,0.00012326744,0.000190141,0.00070017646,0.00018981133,0.00025208626,0.00015989119,0.0002908979,0.00087048026],"category_scores_gemma":[0.0009641052,0.00012502381,0.00019929881,0.00037418102,0.00024850242,0.000085913525,0.00020220694,0.000113695074,0.00026014724],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00086276175,0.000025135578,0.756043,0.0000833378,0.00009521624,0.0069851056,0.00039371298,0.0002263838,0.21855459,0.0002455576,0.0004889288,0.015996292],"study_design_scores_gemma":[0.000021507602,0.000097100354,0.95341223,0.000018108556,0.00006680882,0.032092217,0.00019734463,0.0003248544,0.011869207,0.00016187537,0.001727644,0.000011102292],"about_ca_topic_score_codex":0.0015618264,"about_ca_topic_score_gemma":0.0017273313,"teacher_disagreement_score":0.0015618264,"about_ca_system_score_codex":0.00014608471,"about_ca_system_score_gemma":0.00016149852,"threshold_uncertainty_score":0.0031054616},"labels":[],"label_agreement":null},{"id":"W2098198276","doi":"10.1002/path.2941","title":"Using next‐generation sequencing for the diagnosis of rare disorders: a family with retinitis pigmentosa and skeletal abnormalities","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Calcium signaling and nucleotide metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Hospital and Health Sciences Centre; BC Children's Hospital; BC Cancer Agency; Memorial University of Newfoundland; University of British Columbia","funders":"","keywords":"Retinitis pigmentosa; Exome sequencing; Genetics; DNA sequencing; Biology; Exome; Genetic heterogeneity; Phenotype; Genetic linkage; Candidate gene; Gene; Bioinformatics","score_opus":0.10179612883318379,"score_gpt":0.27512829348207596,"score_spread":0.17333216464889217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098198276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97635615,0.0011183354,0.017280225,0.0012073278,0.00008563432,0.0000891917,0.0006804908,0.00022511753,0.0029574935],"genre_scores_gemma":[0.97188884,0.0008722432,0.025303064,0.0004369995,0.000042696043,0.000049738726,0.00025491873,0.000034753473,0.0011166491],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.9997527,0.000056831293,0.000022703258,0.00007604512,0.0000655695,0.00002617681],"domain_scores_gemma":[0.99952185,0.0003015486,0.00004947123,0.00003166388,0.00003662734,0.000058867154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004853311,0.0006860148,0.000314393,0.0011216919,0.00051770307,0.00035287804,0.0002171923,0.00082088396,0.0011129174],"category_scores_gemma":[0.0012606449,0.00017594342,0.0002813248,0.00036965727,0.0003510721,0.00020612351,0.00034019107,0.00055497745,0.0002967669],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093802076,0.00024955094,0.12738581,0.00015614771,0.00021600182,0.12911658,0.0018617635,0.0017261072,0.61643445,0.0015665567,0.0024506235,0.11789837],"study_design_scores_gemma":[0.00022561426,0.0009875675,0.20226471,0.00021826012,0.0005848745,0.45340768,0.0010308896,0.018603435,0.28518817,0.004781972,0.032536518,0.00017031997],"about_ca_topic_score_codex":0.001230551,"about_ca_topic_score_gemma":0.0020790307,"teacher_disagreement_score":0.001230551,"about_ca_system_score_codex":0.00022957454,"about_ca_system_score_gemma":0.00021432237,"threshold_uncertainty_score":0.0037230253},"labels":[],"label_agreement":null},{"id":"W2099803758","doi":"10.1002/path.4001","title":"A fatty acid‐binding protein 7/RXRβ pathway enhances survival and proliferation in triple‐negative breast cancer","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer, Lipids, and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Cancer Research Institute","keywords":"Triple-negative breast cancer; Breast cancer; Cancer research; Cancer; Chemistry; Internal medicine; Biology; Oncology; Medicine","score_opus":0.01352705199902515,"score_gpt":0.2678149265802272,"score_spread":0.25428787458120206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099803758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844724,0.0008339128,0.00013422038,0.000023795075,0.000003781657,0.0000037591155,0.00016811116,0.0000071456334,0.00037806729],"genre_scores_gemma":[0.9979387,0.00074970187,0.00015443274,0.000025015075,0.000004244777,0.0000081338085,0.00036512542,0.0000028222375,0.00075181364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994826,0.000006485372,0.0000028563234,0.000012102943,0.000014114894,0.00001616775],"domain_scores_gemma":[0.9999567,0.0000049672976,0.000011592836,0.0000037795048,0.000008627077,0.000014404119],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000091272486,0.00013163894,0.00021300309,0.00035458896,0.00019039298,0.00019773195,0.00004941044,0.000100201214,0.0007899462],"category_scores_gemma":[0.00009142353,0.00009124464,0.00014311828,0.00025481757,0.000105206724,0.00005233635,0.00012657774,0.00015247859,0.00016980745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013872216,0.00005612986,0.17490283,0.000069631926,0.000068657195,0.0007566213,0.00017876725,0.000117972384,0.80540466,0.000064046704,0.00035198254,0.016641457],"study_design_scores_gemma":[0.000018553597,0.0005694082,0.9108761,0.000008714351,0.00011468741,0.0025807992,0.00019997719,0.00034904742,0.08199338,0.00010099472,0.0031811665,0.0000069743533],"about_ca_topic_score_codex":0.0013763976,"about_ca_topic_score_gemma":0.0020379121,"teacher_disagreement_score":0.0013763976,"about_ca_system_score_codex":0.00018784648,"about_ca_system_score_gemma":0.0001568664,"threshold_uncertainty_score":0.0027367473},"labels":[],"label_agreement":null},{"id":"W2100248268","doi":"10.1002/path.1941","title":"STAT3 is activated in a subset of the Ewing sarcoma family of tumours","year":2006,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Cancer Institute; National Institutes of Health; American Lebanese Syrian Associated Charities","keywords":"FLI1; Immunostaining; Cancer research; Biology; STAT3; Immunohistochemistry; Oncogene; Sarcoma; Fusion gene; Malignancy; Chromosomal translocation; Gene; Pathology; Medicine; Immunology; Cell cycle; Genetics","score_opus":0.021840091469069355,"score_gpt":0.2772109629510641,"score_spread":0.2553708714819948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100248268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99755055,0.0008023679,0.0004951519,0.000021907046,0.0000038484986,0.000009291609,0.00028495098,0.000019748944,0.0008121513],"genre_scores_gemma":[0.9987826,0.00020436264,0.00018482991,0.000015617074,0.000007086694,0.0000071934205,0.0005739012,0.000002618351,0.00022185345],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99989605,0.000010276673,0.000012455676,0.000021719708,0.000030766594,0.000028741604],"domain_scores_gemma":[0.9998698,0.000021861697,0.00004587281,0.000014702577,0.000019819188,0.000027978926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013294138,0.00017764246,0.00020991192,0.00035286575,0.00015327669,0.00026811604,0.00007151777,0.00016335516,0.0007643765],"category_scores_gemma":[0.00024647737,0.00008650872,0.00018328897,0.00035280234,0.00015101227,0.00012446998,0.00013272502,0.00014941153,0.00028347416],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013980325,0.00008135628,0.3750049,0.00017359928,0.00006061508,0.0047503053,0.00032765607,0.00060404313,0.58807224,0.00037634908,0.0007697499,0.0283811],"study_design_scores_gemma":[0.00005077522,0.0004849029,0.90532005,0.000019035479,0.00009336998,0.037475813,0.0003186258,0.0014717105,0.04733428,0.00060570164,0.0068124514,0.000013281431],"about_ca_topic_score_codex":0.00026898988,"about_ca_topic_score_gemma":0.0004298099,"teacher_disagreement_score":0.0007643765,"about_ca_system_score_codex":0.0001328367,"about_ca_system_score_gemma":0.0000977565,"threshold_uncertainty_score":0.0025570989},"labels":[],"label_agreement":null},{"id":"W2101904315","doi":"10.1002/path.4205","title":"In Brief: <i>BRCA1</i> and <i>BRCA2</i>","year":2013,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill Genome Centre; McGill University","funders":"","keywords":"Breast cancer; BRCA2 Protein; Genetics; Identification (biology); Gene; Biology; Genealogy; Medicine; Cancer; Cancer research; Mutation; History; Germline mutation","score_opus":0.025282902453544313,"score_gpt":0.32212408219979366,"score_spread":0.29684117974624935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101904315","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00013322859,0.9811856,0.00037467363,0.0031286057,0.011091764,0.000013783453,0.00006928578,0.000031833108,0.0039712726],"genre_scores_gemma":[0.00086910906,0.97835606,0.0004959376,0.0022408452,0.0070028286,0.000017436447,0.00018018004,0.0000107969645,0.010826749],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997198,0.000044065528,0.00004283921,0.00005915127,0.00010773186,0.000026472102],"domain_scores_gemma":[0.99887913,0.00039475638,0.00013915886,0.000031954296,0.0003512354,0.00020370386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007983989,0.0014109275,0.001385253,0.0028129378,0.0005061002,0.0014703731,0.0014261785,0.0023875148,0.011624148],"category_scores_gemma":[0.0021184413,0.000343757,0.0004039133,0.0028746652,0.00080789806,0.0026907849,0.0010204784,0.0037698257,0.014772709],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008873308,0.00004544243,0.00017666533,0.007872502,0.000038258808,0.00045855436,0.00005910503,0.0001905528,0.0014527425,0.0024421087,0.3430298,0.64414555],"study_design_scores_gemma":[0.0000055703294,0.000021280355,0.00025743965,0.0011377439,0.000020616759,0.002232456,0.000039271014,0.000019187448,0.00024205261,0.0007507982,0.99526346,0.000010030743],"about_ca_topic_score_codex":0.00083910767,"about_ca_topic_score_gemma":0.0015780673,"teacher_disagreement_score":0.011624148,"about_ca_system_score_codex":0.000662352,"about_ca_system_score_gemma":0.00091198226,"threshold_uncertainty_score":0.038886666},"labels":[],"label_agreement":null},{"id":"W2102757912","doi":"10.1002/path.4530","title":"A novel profibrotic mechanism mediated by <scp>TGFβ</scp>‐stimulated collagen prolyl hydroxylase expression in fibrotic lung mesenchymal cells","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health; Canadian Institutes of Health Research; National Institute for Health and Care Research; U.S. Bureau of Land Management; California Institute of Regenerative Medicine; California Institute for Regenerative Medicine","keywords":"Transforming growth factor; Mesenchymal stem cell; Lung; Mechanism (biology); Chemistry; Cell biology; Epithelial–mesenchymal transition; Cancer research; Downregulation and upregulation; Biology; Internal medicine; Biochemistry; Medicine; Gene","score_opus":0.014682903596579778,"score_gpt":0.2558796202129498,"score_spread":0.24119671661637002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102757912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874988,0.002673336,0.007062751,0.00013683217,0.000044542747,0.000051255185,0.0005581331,0.00011797493,0.001856371],"genre_scores_gemma":[0.99296075,0.0011335808,0.0027555237,0.000068407106,0.000015140645,0.00004826614,0.00061191473,0.000012894493,0.0023936206],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999126,0.000012092855,0.000007654581,0.000019538416,0.000028083261,0.00002000233],"domain_scores_gemma":[0.99992967,0.000010735512,0.000021898457,0.000009453351,0.000009294745,0.00001886723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010254587,0.00024742764,0.00017359776,0.00016285967,0.00013298803,0.00019814962,0.00011858697,0.00020757076,0.0007877391],"category_scores_gemma":[0.000046695946,0.00010638717,0.0002508058,0.00010931557,0.00019477023,0.00014895604,0.00012722185,0.00045533432,0.0002709776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020871194,0.0000036288766,0.000049072692,0.0000146502525,0.0000010180538,0.00003163335,0.0000032735866,0.000006983771,0.9995586,0.00002736367,0.0000064571896,0.00027642024],"study_design_scores_gemma":[0.000010538631,0.0001663551,0.0042102714,0.0000034937812,0.000010072607,0.0004654301,0.000014738196,0.00037075183,0.993206,0.00002826897,0.0015113157,0.000002750771],"about_ca_topic_score_codex":0.00032062456,"about_ca_topic_score_gemma":0.00036448424,"teacher_disagreement_score":0.0007877391,"about_ca_system_score_codex":0.0001431468,"about_ca_system_score_gemma":0.000149726,"threshold_uncertainty_score":0.0026352406},"labels":[],"label_agreement":null},{"id":"W2102928371","doi":"10.1002/(sici)1096-9896(200003)190:4<462::aid-path590>3.0.co;2-d","title":"Endometrial precancer diagnosis by histopathology, clonal analysis, and computerized morphometry","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Endometrial and Cervical Cancer Treatments","field":"Medicine","cited_by":198,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital","funders":"American Cancer Society","keywords":"Pathology; Monoclonal; Endometrial hyperplasia; Medicine; Histopathology; Hyperplasia; Monoclonal antibody","score_opus":0.014638285293165122,"score_gpt":0.28415226492227613,"score_spread":0.269513979629111,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102928371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95629334,0.0031177215,0.035186846,0.00015587707,0.0000366639,0.00021852828,0.00022769529,0.00027446158,0.00448877],"genre_scores_gemma":[0.9446522,0.0009984433,0.05287415,0.000050123173,0.000034583783,0.00012090121,0.0002498408,0.000035049696,0.0009846607],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99897015,0.00041628277,0.00009693787,0.000095891686,0.00037153246,0.00004921923],"domain_scores_gemma":[0.9979486,0.0006792763,0.00040624232,0.00041172226,0.00047564754,0.00007852598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002579087,0.00024526095,0.00026064157,0.0047644656,0.0003200504,0.0005466442,0.00038895017,0.00026616454,0.0011909322],"category_scores_gemma":[0.005758871,0.00025107735,0.0001806932,0.0012228505,0.0007096484,0.00063131144,0.00047826057,0.00021568438,0.00026203037],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006709768,0.000089706715,0.6427299,0.00027598342,0.00010967726,0.0008911258,0.00040095442,0.0014050215,0.1645558,0.0023658792,0.00080155063,0.1857035],"study_design_scores_gemma":[0.000039369188,0.0005637927,0.9076473,0.000073344134,0.00009595976,0.009743666,0.00041651825,0.013947445,0.06096218,0.0018457108,0.0046012327,0.00006349222],"about_ca_topic_score_codex":0.0007944991,"about_ca_topic_score_gemma":0.0024182023,"teacher_disagreement_score":0.0047644656,"about_ca_system_score_codex":0.00022927925,"about_ca_system_score_gemma":0.00022746611,"threshold_uncertainty_score":0.0136396885},"labels":[],"label_agreement":null},{"id":"W2103829419","doi":"10.1002/path.4203","title":"Complete genomic landscape of a recurring sporadic parathyroid carcinoma","year":2013,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Parathyroid Disorders and Treatments","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of British Columbia; St. Paul's Hospital; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Parathyroid carcinoma; Malignancy; Missense mutation; MEN1; Multiple endocrine neoplasia; Cancer research; Carcinoma; Cancer; Population; Primary hyperparathyroidism; HRAS; Biology; Mutation; Medicine; Genetics; Internal medicine; Gene; KRAS","score_opus":0.022337758463513623,"score_gpt":0.260475624731142,"score_spread":0.23813786626762837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103829419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908461,0.002787343,0.002111561,0.0001444798,0.000015107017,0.000023617798,0.0027852743,0.00012653113,0.0011600961],"genre_scores_gemma":[0.9914008,0.0014625496,0.0024946781,0.00009398358,0.000024136245,0.000016408694,0.0035833528,0.000037863017,0.0008862161],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998354,0.000009712584,0.0000080950695,0.000053580643,0.00007140275,0.000021772059],"domain_scores_gemma":[0.9997571,0.00007396928,0.000059006197,0.000020604584,0.000048870428,0.0000405108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010142825,0.00022488117,0.0003327581,0.00092469563,0.000235579,0.00036912557,0.000169705,0.0003146437,0.0010220659],"category_scores_gemma":[0.0005033747,0.000102212674,0.00028680486,0.00068453467,0.00017789961,0.000085955646,0.0002762053,0.00021871348,0.00028814457],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000300293,0.000031662486,0.047491886,0.00028626708,0.000102510465,0.013107858,0.000533886,0.0006921294,0.9047321,0.0002656671,0.00049533846,0.031960472],"study_design_scores_gemma":[0.00002903485,0.0005206429,0.781911,0.000060807357,0.00040940373,0.08439787,0.0005225234,0.002586601,0.1056737,0.0008691984,0.022971282,0.000047940095],"about_ca_topic_score_codex":0.0014325189,"about_ca_topic_score_gemma":0.0018411742,"teacher_disagreement_score":0.0014325189,"about_ca_system_score_codex":0.0002243079,"about_ca_system_score_gemma":0.00019696611,"threshold_uncertainty_score":0.0034191608},"labels":[],"label_agreement":null},{"id":"W2107691432","doi":"10.1002/path.4041","title":"Coordinated expression of galectin‐3 and caveolin‐1 in thyroid cancer","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Caveolin-1 and cellular processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Focal adhesion; Cancer research; Cell migration; RHOA; Cadherin; Cell adhesion; Cancer; Galectin-3; Cell biology; Cell culture; Gene knockdown; Thyroid cancer; Biology; Pathology; Cell; Medicine; Signal transduction; Internal medicine; Biochemistry","score_opus":0.008982759973528254,"score_gpt":0.2632609898250168,"score_spread":0.2542782298514885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107691432","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99401313,0.0024975985,0.0017396915,0.00011662334,0.000012000854,0.000021370997,0.00024193141,0.00006868877,0.0012890181],"genre_scores_gemma":[0.9977023,0.00049104873,0.0008982026,0.00005074116,0.0000034038123,0.000017501692,0.00023953633,0.000009902727,0.00058724533],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999833,0.000021824813,0.000012853095,0.000032812077,0.000056158002,0.000043318883],"domain_scores_gemma":[0.99992657,0.000008069923,0.000018900362,0.000009981327,0.000014899477,0.000021497397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000130087,0.00012435277,0.00017818072,0.0003646577,0.00022112482,0.00046419288,0.00016399333,0.0002537114,0.00042647796],"category_scores_gemma":[0.00013171376,0.00016590396,0.000305632,0.00042422776,0.00022798874,0.00016466396,0.00034562155,0.0003642857,0.00014224551],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000108127395,0.000008756978,0.0034080935,0.00004774525,0.000013136257,0.000104486004,0.00003769012,0.00012011835,0.9933587,0.00014143994,0.0000885992,0.002563144],"study_design_scores_gemma":[0.00005200579,0.00034723486,0.17453538,0.000016921576,0.0001327032,0.0030826828,0.00021059433,0.0048587895,0.8040648,0.0005037953,0.012162077,0.00003303905],"about_ca_topic_score_codex":0.0027992309,"about_ca_topic_score_gemma":0.0033429356,"teacher_disagreement_score":0.0027992309,"about_ca_system_score_codex":0.0009956581,"about_ca_system_score_gemma":0.00035987332,"threshold_uncertainty_score":0.0072239637},"labels":[],"label_agreement":null},{"id":"W2108040642","doi":"10.1002/(sici)1096-9896(200002)190:2<184::aid-path531>3.0.co;2-e","title":"Differential levels of granzyme B, regulatory cytokines, and apoptosis in Crohn's disease and ulcerative colitis at first presentation","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Granzyme B; Granzyme; Lamina propria; Granzyme A; Immunology; Biology; Cytotoxic T cell; Ulcerative colitis; CD8; Inflammatory bowel disease; Cancer research; Immune system; Pathology; Medicine; Perforin; Disease; Epithelium","score_opus":0.008505239025039007,"score_gpt":0.23531682608215018,"score_spread":0.22681158705711119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108040642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879897,0.00093580526,0.000075124706,0.000012496914,0.0000028729776,0.000002257817,0.000022156752,0.000003574435,0.00014681391],"genre_scores_gemma":[0.9992459,0.00029914785,0.00015499632,0.000014525765,0.000007768219,0.00000652524,0.00008175946,0.0000024805333,0.00018689387],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99979573,0.00004810806,0.000023755993,0.000054352084,0.0000316792,0.000046422236],"domain_scores_gemma":[0.9994679,0.00015066433,0.00017012742,0.000030615443,0.00004374111,0.00013695516],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002194477,0.00023802283,0.0003168819,0.0010137979,0.00016759617,0.00039709118,0.000096742544,0.00045012136,0.0008661823],"category_scores_gemma":[0.0011157995,0.0002052046,0.00011919441,0.00038922037,0.00042640092,0.00025914022,0.00022094863,0.00031853266,0.00016372568],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011119677,0.00020347141,0.4071879,0.00025177488,0.00013056977,0.004001675,0.0008595292,0.0001299526,0.55391383,0.0001899747,0.00013268704,0.021878973],"study_design_scores_gemma":[0.00014618704,0.0013304377,0.9722272,0.000018894129,0.00007018172,0.009936525,0.00039874116,0.00017950695,0.014770002,0.00025230733,0.0006570711,0.000012970384],"about_ca_topic_score_codex":0.00020011532,"about_ca_topic_score_gemma":0.00023825986,"teacher_disagreement_score":0.0010137979,"about_ca_system_score_codex":0.0002083065,"about_ca_system_score_gemma":0.00007077169,"threshold_uncertainty_score":0.0028976202},"labels":[],"label_agreement":null},{"id":"W2110323540","doi":"10.1002/path.4369","title":"The activating receptor <scp>NKG2D</scp> of natural killer cells promotes resistance against enterovirus‐mediated inflammatory cardiomyopathy","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Deutsche Stiftung für Herzforschung; Deutsche Forschungsgemeinschaft","keywords":"NKG2D; Myocarditis; Immunology; Natural killer cell; Virus; Biology; Interleukin 12; Interleukin 21; CD8; Immune system; Cytotoxic T cell; Medicine; Internal medicine; In vitro","score_opus":0.005546734245671607,"score_gpt":0.2008716800824474,"score_spread":0.1953249458367758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110323540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976985,0.00080799806,0.00058921886,0.000068472975,0.000026133537,0.0000229058,0.00007863503,0.00006152535,0.00064667873],"genre_scores_gemma":[0.9976428,0.0003749325,0.00038772143,0.000053037787,0.00002328586,0.00003423456,0.00018889333,0.000016762997,0.0012783831],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998066,0.00003079281,0.000021167223,0.000030840685,0.000034532422,0.000076070755],"domain_scores_gemma":[0.9998049,0.000033403077,0.000058441357,0.000026393007,0.000011970119,0.000064978354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018256756,0.00037051318,0.00034016575,0.00017771006,0.00011112699,0.00029582396,0.00016717432,0.00026137018,0.0013240636],"category_scores_gemma":[0.00017809327,0.00013157041,0.00018047435,0.00009230126,0.00028447076,0.00019623242,0.00019861928,0.0008760222,0.00037409028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000557729,0.00013022912,0.00041591327,0.000035478908,0.0000049218634,0.000087522705,0.000013820779,0.000053825872,0.99673563,0.00005942506,0.00006629679,0.0018391951],"study_design_scores_gemma":[0.00039355227,0.006560531,0.032437548,0.00002639796,0.00005196156,0.0024758487,0.00009918952,0.0021413858,0.95198447,0.00015329874,0.0036611636,0.000014640126],"about_ca_topic_score_codex":0.00026877737,"about_ca_topic_score_gemma":0.0004691095,"teacher_disagreement_score":0.0013240636,"about_ca_system_score_codex":0.00015302304,"about_ca_system_score_gemma":0.00017781243,"threshold_uncertainty_score":0.0044294},"labels":[],"label_agreement":null},{"id":"W2110578052","doi":"10.1002/path.2407","title":"Refinement of breast cancer classification by molecular characterization of histological special types","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Breast Cancer Treatment Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":558,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Breast cancer; Characterization (materials science); Computational biology; Pathology; Biology; Cancer; Medicine; Internal medicine; Materials science; Nanotechnology","score_opus":0.01527521027363537,"score_gpt":0.25160249867964024,"score_spread":0.23632728840600487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110578052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96309006,0.005549247,0.026043212,0.00038983277,0.00008981489,0.00021477423,0.0017893459,0.0001348181,0.0026988792],"genre_scores_gemma":[0.9701661,0.0017284087,0.022405853,0.00018977832,0.00008885846,0.00013993162,0.004547029,0.000052768737,0.0006813551],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988423,0.00037407887,0.000161871,0.00024810008,0.0002080309,0.00016574602],"domain_scores_gemma":[0.99738234,0.00069562125,0.0006773679,0.00043968303,0.000662598,0.00014240236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002589671,0.000368137,0.0005933317,0.0025745926,0.00033569208,0.0012122355,0.0005247149,0.0002643114,0.0010433726],"category_scores_gemma":[0.0035296115,0.00014679112,0.0006860792,0.001749348,0.00041266848,0.0006438795,0.0007108322,0.00066155876,0.000582092],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000928134,0.000077243174,0.8097272,0.00051709794,0.00030550107,0.00039306338,0.0006429193,0.0018809022,0.097085156,0.0011702598,0.0014561089,0.085816346],"study_design_scores_gemma":[0.000025151856,0.00023954209,0.9626626,0.00011970763,0.0002840198,0.0012487954,0.0006732507,0.0077567734,0.012295878,0.0017053252,0.012956417,0.00003250369],"about_ca_topic_score_codex":0.0016633485,"about_ca_topic_score_gemma":0.002112237,"teacher_disagreement_score":0.002589671,"about_ca_system_score_codex":0.00035167357,"about_ca_system_score_gemma":0.00044723466,"threshold_uncertainty_score":0.013695657},"labels":[],"label_agreement":null},{"id":"W2113760114","doi":"10.1002/path.4374","title":"<scp>SKA1</scp> over‐expression promotes centriole over‐duplication, centrosome amplification and prostate tumourigenesis","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Hospital; University of Toronto; Sunnybrook Health Science Centre; Western University","funders":"China Postdoctoral Science Foundation; Ministry of Science and Technology of the People's Republic of China; National Natural Science Foundation of China; Ontario Institute for Cancer Research","keywords":"Centrosome; Centriole; Prostate; Biology; Gene duplication; Mitosis; Prostate cancer; Cancer research; Cell biology; Cell cycle; Cell; Cancer; Gene; Genetics","score_opus":0.004829464796722026,"score_gpt":0.22430592638711616,"score_spread":0.21947646159039413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113760114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956138,0.0011241544,0.0010059668,0.00011230983,0.000021479398,0.000014326632,0.0006271255,0.00015338026,0.0013273961],"genre_scores_gemma":[0.99555296,0.0005177213,0.0005483128,0.000024808745,0.0000069349394,0.000012326135,0.0006959347,0.000027500508,0.0026135324],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987364,0.000015851345,0.000012576692,0.000024695744,0.000038463728,0.00003463692],"domain_scores_gemma":[0.99985135,0.000027716556,0.00004695956,0.000015491958,0.000008915647,0.000049480976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009235268,0.00027341623,0.00019655055,0.00034674234,0.00015075301,0.00031685655,0.00014225718,0.00020359638,0.0018424876],"category_scores_gemma":[0.00007352547,0.00015728547,0.0001856501,0.00023353944,0.00026079913,0.00012509704,0.00022130896,0.00050669414,0.0005489212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056227116,0.000012646511,0.00011929317,0.000018902176,0.000004288257,0.000045167264,0.000005245891,0.000042353582,0.99922264,0.000067917674,0.00004951612,0.00035587946],"study_design_scores_gemma":[0.000007114858,0.00010352309,0.0054481453,0.0000035236153,0.000011604706,0.00038037467,0.000021813883,0.00073295087,0.99060273,0.000032525873,0.0026520193,0.0000038304256],"about_ca_topic_score_codex":0.0013476574,"about_ca_topic_score_gemma":0.0020468954,"teacher_disagreement_score":0.0018424876,"about_ca_system_score_codex":0.0003968386,"about_ca_system_score_gemma":0.00029638634,"threshold_uncertainty_score":0.006163776},"labels":[],"label_agreement":null},{"id":"W2114720534","doi":"10.1002/path.2087","title":"Analysis by array CGH of genomic changes associated with the progression or relapse of Wilms' tumour","year":2006,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Comparative genomic hybridization; Wilms' tumor; Wilms tumour; Kidney; Abnormality; Pathology; Medicine; Kidney disease; Pathological; Anaplasia; Stage (stratigraphy); Oncology; Biology; Internal medicine; Chromosome; Genetics; Gene","score_opus":0.004664903322093567,"score_gpt":0.22727834777730863,"score_spread":0.22261344445521505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114720534","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99769944,0.00034423464,0.0010839248,0.000023712355,0.0000056542217,0.000010182667,0.0003657873,0.000038877042,0.00042814063],"genre_scores_gemma":[0.9970962,0.00019598224,0.0014747181,0.00002208104,0.000010425203,0.000023187542,0.00075489073,0.000009479844,0.0004131061],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99985135,0.000020610203,0.000008317036,0.000048036378,0.000043211407,0.000028365177],"domain_scores_gemma":[0.9998233,0.0000626658,0.000051397026,0.000019783163,0.000020266276,0.000022622686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013367215,0.0001430446,0.00021432544,0.0007516422,0.00012261762,0.00018005341,0.00012286118,0.00018824685,0.0009485165],"category_scores_gemma":[0.0004777935,0.00007911329,0.0001345258,0.000495746,0.00013260625,0.000087589986,0.00009638885,0.00018161575,0.00019112744],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065347424,0.000037660437,0.19824968,0.00007605933,0.00008236345,0.0015533998,0.0002563441,0.00029201285,0.77228534,0.000095001764,0.0003318013,0.026086848],"study_design_scores_gemma":[0.000009547084,0.00027058765,0.9270352,0.000003959083,0.0000713065,0.0040699258,0.00012166869,0.0010181435,0.06556643,0.00010293844,0.0017208492,0.000009353377],"about_ca_topic_score_codex":0.0005212533,"about_ca_topic_score_gemma":0.0007123055,"teacher_disagreement_score":0.0009485165,"about_ca_system_score_codex":0.00012340657,"about_ca_system_score_gemma":0.00008258075,"threshold_uncertainty_score":0.0031731129},"labels":[],"label_agreement":null},{"id":"W2116411136","doi":"10.1002/path.2659","title":"Characterization of the molecular differences between ovarian endometrioid carcinoma and ovarian serous carcinoma","year":2009,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; BC Cancer Agency; Université de Montréal; Vancouver General Hospital; Hôtel-Dieu de Montréal; University of British Columbia; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; University of Michigan","keywords":"Ovarian carcinoma; Carcinoma; Serous carcinoma; Serous fluid; Ovary; Medicine; Internal medicine; Oncology; Pathology; Ovarian cancer; Cancer","score_opus":0.017790209649733806,"score_gpt":0.24877125271037487,"score_spread":0.23098104306064107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116411136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99828535,0.00085190654,0.0004152203,0.000011316546,0.000002648033,0.000008564748,0.000082563194,0.0000043659766,0.00033809996],"genre_scores_gemma":[0.9986174,0.00044679776,0.000623735,0.0000125135675,0.000003961921,0.000011612594,0.00015509129,0.0000016364556,0.00012725139],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99985194,0.000029184106,0.000025282572,0.000030695075,0.000036954283,0.000025903517],"domain_scores_gemma":[0.99955493,0.00016496585,0.0001345733,0.00004271748,0.000054144646,0.000048701306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003420915,0.00010294592,0.00016965307,0.00091006217,0.00010086825,0.00037511127,0.00009726768,0.00015682376,0.0005363469],"category_scores_gemma":[0.0008551874,0.00009318814,0.00012387203,0.0005296398,0.00022286257,0.00019109684,0.00015659933,0.00012394221,0.00013869815],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010525313,0.00004369683,0.28990072,0.00017683972,0.000056148732,0.00081973255,0.0002807039,0.00015478623,0.69528586,0.00015870476,0.000042470354,0.01202779],"study_design_scores_gemma":[0.000014188957,0.000343436,0.95679945,0.000011256612,0.000042084095,0.00351992,0.00038222034,0.00055460515,0.03707469,0.00010803343,0.0011440259,0.0000060783623],"about_ca_topic_score_codex":0.0002264454,"about_ca_topic_score_gemma":0.0003353207,"teacher_disagreement_score":0.00091006217,"about_ca_system_score_codex":0.00009196214,"about_ca_system_score_gemma":0.00010788505,"threshold_uncertainty_score":0.0018091202},"labels":[],"label_agreement":null},{"id":"W2117046140","doi":"10.1002/path.2976","title":"A Ki67/BCL2 index based on immunohistochemistry is highly prognostic in ER‐positive breast cancer","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Breast Cancer Treatment Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"Cancer Research UK; Cancer Research UK Cambridge Institute, University of Cambridge; National Institute for Health and Care Research; Sanofi","keywords":"Oncology; Hazard ratio; Breast cancer; Nottingham Prognostic Index; Medicine; Tissue microarray; Internal medicine; Proportional hazards model; Confidence interval; Estrogen receptor; Immunohistochemistry; Cohort; Progesterone receptor; Multivariate analysis; Cancer","score_opus":0.010083508405816297,"score_gpt":0.2543675574984498,"score_spread":0.24428404909263352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117046140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961145,0.0014446522,0.0012927074,0.0000744243,0.000017322058,0.00001257317,0.00010365588,0.000026490277,0.0009136379],"genre_scores_gemma":[0.9990402,0.00023949091,0.00037236873,0.000016545922,0.00002042644,0.000005063456,0.00014775713,0.000004669476,0.00015340607],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99958605,0.0001483698,0.000038258502,0.000058636215,0.00012628733,0.000042416046],"domain_scores_gemma":[0.9983712,0.00050658756,0.00056731305,0.00017655375,0.00018938743,0.00018904619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018540396,0.00023193572,0.00033351622,0.00094605796,0.00020335657,0.0005376696,0.000275234,0.00028807012,0.00080480496],"category_scores_gemma":[0.003588177,0.00017728187,0.00017576753,0.0007815276,0.00029723183,0.00038442455,0.00038809516,0.00055024645,0.00031066054],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014427572,0.00004100048,0.9772003,0.000034280056,0.000072800605,0.00009472568,0.000040971554,0.00032665636,0.006454748,0.000037418402,0.00020256187,0.014051701],"study_design_scores_gemma":[0.000023082654,0.00026570342,0.9945425,0.000010061807,0.00010073295,0.0006450002,0.000088474306,0.0018769072,0.0016904501,0.00023707365,0.000509354,0.0000106900725],"about_ca_topic_score_codex":0.0007367918,"about_ca_topic_score_gemma":0.0013193274,"teacher_disagreement_score":0.0018540396,"about_ca_system_score_codex":0.00020623361,"about_ca_system_score_gemma":0.00020215353,"threshold_uncertainty_score":0.0098052025},"labels":[],"label_agreement":null},{"id":"W2117613554","doi":"10.1002/path.4522","title":"Recurrent genomic rearrangements in primary testicular lymphoma","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Cancer Agency","funders":"Terry Fox Research Institute; Canadian Institutes of Health Research; Dr. Mildred Scheel Stiftung für Krebsforschung; Killam Trusts; Michael Smith Health Research BC","keywords":"CIITA; Biology; Gene rearrangement; Comparative genomic hybridization; Lymphoma; Malignancy; Diffuse large B-cell lymphoma; Fluorescence in situ hybridization; MHC class II; Chromosomal rearrangement; Cancer research; Breakpoint; Pathology; Genetics; Immune system; Major histocompatibility complex; Chromosome; Medicine; Gene; Immunology; Karyotype","score_opus":0.035782868216441645,"score_gpt":0.2833541948941516,"score_spread":0.24757132667770995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117613554","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945726,0.0020700754,0.0011617736,0.000055529505,0.0000054669617,0.000020197333,0.00018971875,0.0000800629,0.0018445402],"genre_scores_gemma":[0.99910223,0.00028976167,0.00031376755,0.000014955726,0.0000067053475,0.000003729953,0.00009614475,0.0000042714887,0.00016836495],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987686,0.000019413983,0.000008746896,0.000036238835,0.00003609287,0.000022680388],"domain_scores_gemma":[0.9998684,0.0000334926,0.00005053337,0.000011960551,0.000010604174,0.000025048606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001064106,0.0001268496,0.00015638505,0.00071163377,0.00013860666,0.00022094064,0.00012400381,0.0001633505,0.0016304586],"category_scores_gemma":[0.000339555,0.0000928423,0.000087496155,0.00034072238,0.000231951,0.00010567879,0.00019149482,0.00012994741,0.00017370124],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007324175,0.00006596185,0.2156042,0.00031872667,0.000079746205,0.027543105,0.0005397466,0.0007413423,0.68941325,0.00040750136,0.00054424524,0.064009726],"study_design_scores_gemma":[0.00006814041,0.0009160463,0.70062816,0.000031222255,0.00023744702,0.14900614,0.0003663079,0.0012536555,0.13769181,0.0005025248,0.009279442,0.000019056572],"about_ca_topic_score_codex":0.00046503838,"about_ca_topic_score_gemma":0.0006828139,"teacher_disagreement_score":0.0016304586,"about_ca_system_score_codex":0.00022786074,"about_ca_system_score_gemma":0.00011211975,"threshold_uncertainty_score":0.005454421},"labels":[],"label_agreement":null},{"id":"W2117677108","doi":"10.1002/1096-9896(2000)9999:9999<::aid-path733>3.0.co;2-u","title":"Significantly differentbcl-2 expression profiles in gastric and non-gastric primary extranodal high-grade B-cell lymphomas","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Gastric lymphoma; Lymphoma; Stomach; Pathology; Biology; Chromosomal translocation; Immunohistochemistry; Phenotype; Cancer research; Medicine; Internal medicine; Gene; Genetics","score_opus":0.009318471791157296,"score_gpt":0.22622134243433553,"score_spread":0.21690287064317823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117677108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995198,0.0002070095,0.00007288636,0.00000339565,0.000001155391,0.0000030265803,0.0000174715,0.0000023998707,0.00017288393],"genre_scores_gemma":[0.99964523,0.00007405368,0.00007633491,0.0000073962447,0.0000026497999,0.0000053496246,0.00008196486,0.0000015337166,0.00010554681],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99970514,0.000056224235,0.000030003133,0.000052699237,0.00006669321,0.00008909453],"domain_scores_gemma":[0.9995758,0.00012322505,0.000097189695,0.000037096877,0.00007034549,0.00009628697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026354444,0.00021804281,0.0002620129,0.0007073669,0.00021451106,0.0003741707,0.00012130568,0.00024130224,0.0011598141],"category_scores_gemma":[0.00091139844,0.00022217685,0.00015953011,0.00034744813,0.00042065664,0.00013958388,0.00027313328,0.00012606617,0.00019940527],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00072695705,0.00007622776,0.9163678,0.00007563895,0.00007953132,0.005063321,0.00063760905,0.00008064966,0.069236815,0.00004740272,0.000086481225,0.0075214165],"study_design_scores_gemma":[0.000024120547,0.00018204079,0.9877709,0.0000040687705,0.000038168524,0.008913559,0.00028447402,0.000106260035,0.0023628378,0.000029078676,0.00027996136,0.0000045229713],"about_ca_topic_score_codex":0.0008265671,"about_ca_topic_score_gemma":0.0012829265,"teacher_disagreement_score":0.0011598141,"about_ca_system_score_codex":0.00023396086,"about_ca_system_score_gemma":0.00008998928,"threshold_uncertainty_score":0.0038799644},"labels":[],"label_agreement":null},{"id":"W2118290322","doi":"10.1002/path.2636","title":"Does massively parallel DNA resequencing signify the end of histopathology as we know it?","year":2009,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Massive parallel sequencing; DNA sequencing; Genome; Genomics; Biology; Computational biology; Cancer; Personal genomics; Genetics; DNA; Gene","score_opus":0.027558867859584522,"score_gpt":0.3142282678531708,"score_spread":0.2866693999935863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118290322","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011477746,0.9945846,0.0005146388,0.0022994736,0.0010814795,0.000004947477,0.000012892272,0.000024027202,0.0013631687],"genre_scores_gemma":[0.00097147305,0.99537355,0.00070096174,0.0010991656,0.0006496883,0.000008447579,0.000019096537,0.000004847813,0.0011728476],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9995061,0.0001092683,0.00006407193,0.00007642415,0.00021108588,0.000032995304],"domain_scores_gemma":[0.9981331,0.0010136081,0.00015949465,0.00007699862,0.00048349367,0.00013339054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002167731,0.0007579449,0.0018438279,0.002114695,0.0003132985,0.0014730226,0.0013378685,0.0021933205,0.0036439884],"category_scores_gemma":[0.0036960721,0.00035320214,0.00041222695,0.0015578319,0.0014303963,0.003243055,0.00059975387,0.0026282256,0.0050260862],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000919122,0.000041077932,0.00015377872,0.004987006,0.000051411953,0.0003252462,0.000042569354,0.0002564229,0.0012860757,0.005407351,0.048174333,0.93918294],"study_design_scores_gemma":[0.000029762776,0.00009300953,0.00069027545,0.0027608385,0.000044926353,0.0028238003,0.00010050295,0.00011217282,0.0009506511,0.006329822,0.98603433,0.000030011031],"about_ca_topic_score_codex":0.0009013647,"about_ca_topic_score_gemma":0.0015924164,"teacher_disagreement_score":0.0036439884,"about_ca_system_score_codex":0.00096131,"about_ca_system_score_gemma":0.0010248501,"threshold_uncertainty_score":0.012190342},"labels":[],"label_agreement":null},{"id":"W2118576771","doi":"10.1002/path.4003","title":"A whole‐genome massively parallel sequencing analysis of <b><i>BRCA1</i></b> mutant oestrogen receptor‐negative and ‐positive breast cancers","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Cancer Research UK; Wellcome Trust","keywords":"Germline mutation; Germline; Biology; Breast cancer; Cancer research; Genetics; Massive parallel sequencing; Allele; Mutation; Somatic cell; Cancer; Gene; DNA sequencing","score_opus":0.012678978988317224,"score_gpt":0.262152435004422,"score_spread":0.24947345601610477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118576771","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9796138,0.0009312307,0.006042706,0.00013225888,0.000024544139,0.00006486432,0.011293444,0.00021360294,0.001683597],"genre_scores_gemma":[0.94688046,0.00069465867,0.021429019,0.00032689882,0.000014839171,0.00006780188,0.027689507,0.00013403177,0.0027628716],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998636,0.000010721726,0.0000069062326,0.000056244302,0.000044255372,0.000018272813],"domain_scores_gemma":[0.9998419,0.000027818936,0.00003383755,0.000017291597,0.000042316628,0.000036749094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019329405,0.00023698772,0.00023423941,0.0005768146,0.00034193727,0.00026548406,0.00018552925,0.00027029123,0.00063479214],"category_scores_gemma":[0.0003316515,0.00014277274,0.00038340472,0.00047847303,0.00011919123,0.000061843384,0.00023516362,0.00030742402,0.0002402172],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037127116,0.000075517564,0.025350407,0.00019519626,0.000180505,0.0007512476,0.00019508052,0.0010662168,0.9515304,0.00024932265,0.0014991987,0.018535681],"study_design_scores_gemma":[0.000067906396,0.00040146644,0.76944965,0.000058952093,0.00046657436,0.0047567235,0.00036825723,0.016631735,0.17967235,0.00057965424,0.027501876,0.00004473101],"about_ca_topic_score_codex":0.0028658952,"about_ca_topic_score_gemma":0.006467533,"teacher_disagreement_score":0.0028658952,"about_ca_system_score_codex":0.00027531036,"about_ca_system_score_gemma":0.00029595656,"threshold_uncertainty_score":0.0056984425},"labels":[],"label_agreement":null},{"id":"W2122566852","doi":"10.1002/path.2445","title":"The EWSR1/NR4A3 fusion protein of extraskeletal myxoid chondrosarcoma activates the <i>PPARG</i> nuclear receptor gene","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Nuclear Receptors and Signaling","field":"Neuroscience","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Saint-François d'Assise","funders":"National Cancer Institute; Cancer Research Society; National Institutes of Health; Memorial Sloan-Kettering Cancer Center","keywords":"Peroxisome proliferator-activated receptor gamma; Biology; Fusion protein; Gene isoform; Cancer research; Fusion gene; Transcription factor; Nuclear receptor; Gene; Molecular biology; Genetics; Peroxisome proliferator-activated receptor","score_opus":0.023996951028401877,"score_gpt":0.23315623466864205,"score_spread":0.20915928364024017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122566852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99687874,0.00040460267,0.0014252416,0.00005786429,0.000010822216,0.000015245492,0.00042020975,0.000034182318,0.0007531141],"genre_scores_gemma":[0.99129105,0.0003830641,0.0033971714,0.000051164498,0.0000064321616,0.000037481757,0.0016575124,0.00001567508,0.0031606348],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998437,0.000017999542,0.000017937664,0.000029339415,0.000053113647,0.000037904098],"domain_scores_gemma":[0.99993575,0.000012951838,0.000018657316,0.000007048961,0.00000810251,0.000017406128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104934,0.00022540538,0.00018905595,0.00022971514,0.00015192549,0.00012583833,0.00009890192,0.00016514999,0.0014566996],"category_scores_gemma":[0.00011035192,0.0001345843,0.0002940614,0.00019288957,0.00018473189,0.00009384822,0.00015940848,0.0003348326,0.00044305308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047401645,0.000008741337,0.00033026058,0.000015226506,0.0000025763682,0.000042513784,0.000007091681,0.000020000896,0.99913186,0.000036130634,0.000017034217,0.00034117483],"study_design_scores_gemma":[0.000022546146,0.00021829759,0.02651969,0.000006370899,0.000019203128,0.0010983588,0.00004942537,0.0009373498,0.9679567,0.00006785472,0.0030997007,0.0000046246314],"about_ca_topic_score_codex":0.000697329,"about_ca_topic_score_gemma":0.0012303266,"teacher_disagreement_score":0.0014566996,"about_ca_system_score_codex":0.00028189106,"about_ca_system_score_gemma":0.00019784531,"threshold_uncertainty_score":0.0048731565},"labels":[],"label_agreement":null},{"id":"W2128904109","doi":"10.1002/path.4088","title":"Molecular characterization of mucinous ovarian tumours supports a stratified treatment approach with <scp>HER2</scp> targeting in 19% of carcinomas","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":197,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; BC Cancer Agency; Toronto General Hospital; University Health Network; University of Toronto; Alberta Health Services; University of British Columbia","funders":"National Cancer Institute; Cancer Council Tasmania; Cancer Council Victoria; Peter MacCallum Cancer Centre; Cancer Council South Australia; Medical Research Council; Cancer Council NSW; National Health and Medical Research Council; Alberta Health Services","keywords":"KRAS; Medicine; CISH; Immunohistochemistry; Internal medicine; Oncology; Concordance; Stage (stratigraphy); Ovarian cancer; Pathology; Cancer; Biology; Gene","score_opus":0.015985301162487513,"score_gpt":0.2486619037406503,"score_spread":0.2326766025781628,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128904109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996002,0.001200481,0.0013098835,0.0001489959,0.0000065447684,0.000022695956,0.00014037146,0.00003447271,0.0011345766],"genre_scores_gemma":[0.99837506,0.00036991644,0.0009121026,0.00003340739,0.000014323383,0.000007832535,0.00018844302,0.0000038709604,0.000095092044],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996153,0.00008982146,0.00006904363,0.000047360805,0.00012148278,0.000057103578],"domain_scores_gemma":[0.9993955,0.00013609661,0.0001949321,0.0000975496,0.000109131666,0.00006675883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008885467,0.00014924152,0.00024221715,0.0010263915,0.000229589,0.0005290784,0.0001770832,0.00016981638,0.00075515185],"category_scores_gemma":[0.0014503987,0.00012042092,0.00022074039,0.0004560424,0.00035218924,0.00023791935,0.0002535663,0.00019373838,0.00016994693],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030840508,0.000018093691,0.8867231,0.00008747707,0.000058701156,0.001205593,0.00015102909,0.0004758532,0.0779408,0.00019158458,0.0002824826,0.032556903],"study_design_scores_gemma":[0.0000107742835,0.0001416725,0.9750783,0.000022466269,0.000055556367,0.007477617,0.00026666623,0.0013547958,0.012786249,0.00020778389,0.0025929108,0.0000052175023],"about_ca_topic_score_codex":0.0010520653,"about_ca_topic_score_gemma":0.0021194809,"teacher_disagreement_score":0.0010520653,"about_ca_system_score_codex":0.0002298904,"about_ca_system_score_gemma":0.00025237747,"threshold_uncertainty_score":0.004699111},"labels":[],"label_agreement":null},{"id":"W2132589659","doi":"10.1002/path.1406","title":"Fas ligand and tumour counter‐attack in colorectal cancer stratified according to microsatellite instability status","year":2003,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Microsatellite instability; Fas ligand; Colorectal cancer; Tumor-infiltrating lymphocytes; Immunohistochemistry; Cancer research; Cancer; Biology; Adenocarcinoma; Pathology; Apoptosis; Oncology; Medicine; Internal medicine; Microsatellite; Immunotherapy; Gene; Programmed cell death; Genetics","score_opus":0.02829657269598573,"score_gpt":0.32028990919444766,"score_spread":0.29199333649846193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132589659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996866,0.00016505008,0.000021381964,0.0000053939652,0.0000010939283,0.0000014087528,0.000022326065,0.0000015729703,0.00009521251],"genre_scores_gemma":[0.9998024,0.00005282161,0.000023840828,0.0000027586761,0.0000016299894,0.0000011681772,0.000040383333,4.1928197e-7,0.00007444183],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998927,0.000021790966,0.0000130180115,0.000021551146,0.00001913504,0.0000317685],"domain_scores_gemma":[0.9996209,0.00008359356,0.00012946049,0.000021445006,0.00003916916,0.00010544806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017894435,0.00011557322,0.00021640371,0.0007446656,0.00016090674,0.00029991358,0.00008257917,0.00019975407,0.0008345839],"category_scores_gemma":[0.00056125026,0.00014180712,0.00016193012,0.00043378153,0.00019577976,0.00016371334,0.00018678345,0.0001674128,0.00016979096],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001985836,0.00004658626,0.9603262,0.000026002683,0.000059565537,0.00040330857,0.0001431067,0.00008799782,0.033805422,0.00003125957,0.0000398719,0.003044838],"study_design_scores_gemma":[0.0000067678775,0.00030801434,0.99745816,0.0000018493951,0.000029507839,0.0006089272,0.000118496144,0.00018916227,0.0011222456,0.000018129684,0.00013614014,0.0000025494114],"about_ca_topic_score_codex":0.0010839186,"about_ca_topic_score_gemma":0.0017708854,"teacher_disagreement_score":0.0010839186,"about_ca_system_score_codex":0.00017681492,"about_ca_system_score_gemma":0.00011393536,"threshold_uncertainty_score":0.0027919412},"labels":[],"label_agreement":null},{"id":"W2135256854","doi":"10.1002/path.4630","title":"Local effects of human <scp>PCSK9</scp> on the atherosclerotic lesion","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lipoproteins and Cardiovascular Health","field":"Medicine","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saint John Regional Hospital; Dalhousie University","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"PCSK9; Lesion; Kexin; Medicine; LDL receptor; Internal medicine; Pathology; Lipoprotein; Cholesterol","score_opus":0.04138753946837025,"score_gpt":0.2929651882022028,"score_spread":0.25157764873383254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135256854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996563,0.00083466416,0.0008970276,0.00012094252,0.00003665835,0.000027220878,0.00045430174,0.0000921343,0.00097388093],"genre_scores_gemma":[0.99557424,0.0006117224,0.0010551235,0.00008115462,0.000024140547,0.000039986848,0.0006179382,0.000024747693,0.0019709773],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99976784,0.00003526733,0.000022291073,0.00005443683,0.000052735377,0.00006754496],"domain_scores_gemma":[0.99984694,0.00002898105,0.00003483704,0.000023133996,0.000012854107,0.000053224914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017520848,0.00031664726,0.0004239474,0.00018476254,0.00013465478,0.00025432924,0.00013412196,0.00024563892,0.0016001186],"category_scores_gemma":[0.00012327297,0.00010280896,0.00028258289,0.00015451314,0.00033320446,0.00017958721,0.00016220179,0.00088554627,0.0005732985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007497122,0.000097296266,0.00018724252,0.000039742332,0.000009238673,0.000054141343,0.000012120356,0.00008394897,0.99680007,0.000043871092,0.00009766618,0.0018248559],"study_design_scores_gemma":[0.00004811645,0.0011669034,0.003225742,0.000004582225,0.000022043356,0.00017028287,0.000022880819,0.00047266323,0.993763,0.000020275187,0.0010792535,0.0000042278984],"about_ca_topic_score_codex":0.00073201035,"about_ca_topic_score_gemma":0.0009044864,"teacher_disagreement_score":0.0016001186,"about_ca_system_score_codex":0.00028934702,"about_ca_system_score_gemma":0.0002292823,"threshold_uncertainty_score":0.0053529143},"labels":[],"label_agreement":null},{"id":"W2135668812","doi":"10.1002/path.2414","title":"Expression of G protein‐coupled receptor kinase 4 is associated with breast cancer tumourigenesis","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Receptor Mechanisms and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Ministry of Education, Culture, Sports, Science and Technology; Japan Health Sciences Foundation","keywords":"G protein-coupled receptor kinase; G protein-coupled receptor; Phosphorylation; Kinase; Cell biology; Cancer research; MAPK/ERK pathway; Protein kinase A; Biology; Signal transduction","score_opus":0.011042238097116333,"score_gpt":0.22907233699686017,"score_spread":0.21803009889974384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135668812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964966,0.0017098152,0.0006240725,0.0001512321,0.000020734442,0.0000113455435,0.00015191206,0.00008833404,0.000745914],"genre_scores_gemma":[0.99659026,0.0009879951,0.00039481025,0.00003546673,0.000019077188,0.000013398088,0.00036056136,0.000014621045,0.0015837747],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997992,0.000045363937,0.00001761846,0.000038101552,0.000053929816,0.00004582834],"domain_scores_gemma":[0.9994343,0.00007275331,0.0003011268,0.000046085705,0.00004490078,0.00010079992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018716604,0.00031912568,0.00037801737,0.0009268775,0.00023686868,0.00037509392,0.00021417406,0.0004580148,0.002212124],"category_scores_gemma":[0.0003816785,0.00026760652,0.00027131184,0.00053968764,0.0004068891,0.00014909019,0.000307967,0.00060154084,0.00065056817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010694888,0.00006841769,0.022457844,0.00008162273,0.000049840048,0.0018891972,0.000043425185,0.000055638466,0.9703643,0.00013321033,0.00030511458,0.0034818659],"study_design_scores_gemma":[0.00009886607,0.0007886406,0.63332003,0.000025393012,0.00027427435,0.027571315,0.00025690193,0.0015014074,0.32496643,0.0005096195,0.010651493,0.00003561898],"about_ca_topic_score_codex":0.0005243734,"about_ca_topic_score_gemma":0.0003981231,"teacher_disagreement_score":0.002212124,"about_ca_system_score_codex":0.00030232937,"about_ca_system_score_gemma":0.00015875863,"threshold_uncertainty_score":0.007400334},"labels":[],"label_agreement":null},{"id":"W2135737876","doi":"10.1002/path.1849","title":"Enhanced monocyte binding to human cytomegalovirus‐infected syncytiotrophoblast results in increased apoptosis via the release of tumour necrosis factor alpha","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; University of Alberta","keywords":"Trophoblast; Monocyte; Apoptosis; Tumor necrosis factor alpha; Human cytomegalovirus; Biology; Cell adhesion molecule; Cell biology; Immunology; Molecular biology; Placenta; Virus; Biochemistry; Fetus","score_opus":0.027477040677430432,"score_gpt":0.3171258682303512,"score_spread":0.28964882755292076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135737876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99483997,0.002354971,0.0013129957,0.000050375074,0.000018993223,0.000009362509,0.00013829065,0.000019962556,0.0012552558],"genre_scores_gemma":[0.9958405,0.0009579867,0.00078111526,0.000049356095,0.000009756812,0.000018526018,0.000340365,0.000004393049,0.0019979146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997925,0.000040031966,0.000015048755,0.000028459262,0.00007247858,0.000051491406],"domain_scores_gemma":[0.9998741,0.000037302532,0.000026381169,0.000021389891,0.000018251234,0.000022551067],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013672479,0.00021200257,0.0002084915,0.00018295128,0.00014283648,0.0003352504,0.00010361987,0.00019391248,0.0021952947],"category_scores_gemma":[0.00019979065,0.0001363367,0.00019217051,0.00013442386,0.00012337811,0.000098232704,0.00018365547,0.0005330157,0.0004810397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011985705,0.000013289918,0.00087410293,0.000032822827,0.0000068454297,0.0001062749,0.000030229416,0.000019017476,0.997934,0.000060795246,0.000031778134,0.00077088835],"study_design_scores_gemma":[0.000018998284,0.00042462174,0.047184393,0.000011919201,0.000020151487,0.0009116307,0.0000795485,0.0008256167,0.94811517,0.000049508424,0.0023545662,0.0000039388733],"about_ca_topic_score_codex":0.001538243,"about_ca_topic_score_gemma":0.0014755573,"teacher_disagreement_score":0.0021952947,"about_ca_system_score_codex":0.00037316346,"about_ca_system_score_gemma":0.0001529183,"threshold_uncertainty_score":0.0073440075},"labels":[],"label_agreement":null},{"id":"W2136038764","doi":"10.1002/path.1986","title":"Prognostic significance of PU.1 in follicular lymphoma","year":2006,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital","funders":"","keywords":"International Prognostic Index; Follicular lymphoma; Medicine; Lymphoma; Germinal center; Internal medicine; Immunohistochemistry; Malignancy; Pathological; Oncology; CD20; Pathology; Diffuse large B-cell lymphoma; Immunology; B cell; Antibody","score_opus":0.011159157677379487,"score_gpt":0.2522099009864713,"score_spread":0.2410507433090918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136038764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972205,0.001862592,0.00013124826,0.00006399323,0.0000056696026,0.0000039654633,0.00007680506,0.000008959964,0.0006262982],"genre_scores_gemma":[0.9996124,0.00014444719,0.00008067123,0.0000075421485,0.000012183914,0.0000026828957,0.00007179696,0.0000012601682,0.0000670587],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998047,0.000052011335,0.000012933008,0.000036472426,0.000039189552,0.00005468246],"domain_scores_gemma":[0.99916136,0.00026936582,0.00029402794,0.000036324276,0.00007616325,0.00016271962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004832342,0.000194875,0.00019823221,0.0008449467,0.0003010038,0.00051063136,0.00017403082,0.00032099095,0.0010896781],"category_scores_gemma":[0.0017753205,0.00011022728,0.0001545622,0.0006298141,0.00041304,0.00036613064,0.00029829782,0.000384415,0.00017766532],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005520542,0.000016907732,0.97788846,0.000026295445,0.000027426586,0.0002957575,0.000052862702,0.00017659982,0.0042893114,0.000046737292,0.00015002661,0.016477546],"study_design_scores_gemma":[0.000014082819,0.00019446443,0.9950571,0.000011182152,0.00006281362,0.0017344555,0.00008096045,0.00059331127,0.0013709476,0.00016368082,0.00070840825,0.000008512556],"about_ca_topic_score_codex":0.0006188995,"about_ca_topic_score_gemma":0.00072097854,"teacher_disagreement_score":0.0010896781,"about_ca_system_score_codex":0.0003121512,"about_ca_system_score_gemma":0.00017438232,"threshold_uncertainty_score":0.0036453605},"labels":[],"label_agreement":null},{"id":"W2137785594","doi":"10.1002/path.4518","title":"Targeting <scp>ASCT2</scp>‐mediated glutamine uptake blocks prostate cancer growth and tumour development","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":330,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Health and Medical Research Council; National Breast Cancer Foundation; Tour de Cure; Cancer Institute NSW; Prostate Cancer Foundation of Australia; Medical Research Council; Movember Foundation; Prostate Cancer Foundation","keywords":"Glutamine; LNCaP; Cell growth; Cell cycle; Cancer cell; Prostate cancer; Glucose uptake; Cancer research; Citric acid cycle; Chemistry; Cell biology; Gene knockdown; mTORC1; Biology; Cell; Biochemistry; Cancer; Apoptosis; Signal transduction; PI3K/AKT/mTOR pathway; Metabolism; Endocrinology; Amino acid","score_opus":0.011249768430748115,"score_gpt":0.23652946878173342,"score_spread":0.2252797003509853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137785594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874594,0.0016257085,0.0047613694,0.00037693954,0.000093299,0.000061437175,0.0014205533,0.00045903932,0.0037422562],"genre_scores_gemma":[0.9920244,0.0006087927,0.001967732,0.00007709523,0.000013657586,0.000045431607,0.0011166022,0.00006188812,0.0040845242],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998361,0.000023574295,0.000012086512,0.00003018985,0.000066330984,0.000031679087],"domain_scores_gemma":[0.9999212,0.000011633756,0.00001816059,0.000011623465,0.000009719941,0.000027623806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001082962,0.00033244988,0.00026182013,0.00022739651,0.0001968788,0.00027927617,0.00020053938,0.0002978596,0.0018638489],"category_scores_gemma":[0.00008507584,0.00011469579,0.0002304641,0.00023535475,0.00031380577,0.0001528253,0.00014077862,0.0006507998,0.00038823634],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000091462214,0.00003753097,0.000105158375,0.00003232038,0.000008784581,0.000042291515,0.0000060394773,0.00015337561,0.997943,0.00017229476,0.0002445227,0.0011631488],"study_design_scores_gemma":[0.00001848699,0.00020069687,0.0013735633,0.000002653254,0.000012659585,0.00021116137,0.000008759626,0.0012290598,0.9918527,0.000031116764,0.0050560744,0.0000031472016],"about_ca_topic_score_codex":0.001791216,"about_ca_topic_score_gemma":0.0033695048,"teacher_disagreement_score":0.0018638489,"about_ca_system_score_codex":0.00046406104,"about_ca_system_score_gemma":0.00044031194,"threshold_uncertainty_score":0.0062351823},"labels":[],"label_agreement":null},{"id":"W2140772167","doi":"10.1002/path.1792","title":"The gene expression profile of extraskeletal myxoid chondrosarcoma","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Bone Tumor Diagnosis and Treatments","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital","funders":"National Cancer Institute; National Institutes of Health; Michael Smith Health Research BC","keywords":"Biology; Gene expression profiling; Tissue microarray; Sarcoma; DNA microarray; Pathology; Peroxisome proliferator-activated receptor gamma; Cancer research; Significance analysis of microarrays; Gene expression; Gene; Microarray; Immunohistochemistry; Medicine; Genetics; Peroxisome proliferator-activated receptor","score_opus":0.01356045103472838,"score_gpt":0.27870572052551706,"score_spread":0.2651452694907887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140772167","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983612,0.00046851067,0.00032063658,0.00001782073,0.000002319809,0.0000040604414,0.00047200112,0.0000062931827,0.00034731728],"genre_scores_gemma":[0.99507856,0.0005659551,0.0010394623,0.000038044887,0.0000061286964,0.000022539689,0.001676521,0.000005446943,0.0015672527],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998988,0.000010786368,0.000007632824,0.000029371378,0.00003344134,0.00001990301],"domain_scores_gemma":[0.9999019,0.000020377878,0.00002361935,0.000006718283,0.000027024817,0.000020371737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007545421,0.00011705321,0.00020990192,0.00055529835,0.00011525923,0.00020259754,0.000060433344,0.00017554763,0.00048011553],"category_scores_gemma":[0.00014722835,0.000091013135,0.000114624294,0.0004175838,0.00013469704,0.00010520903,0.00010728397,0.00011139765,0.00022555566],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018386323,0.000011923335,0.016722213,0.000043361957,0.000013277195,0.00011988971,0.00006548135,0.000085923355,0.9803273,0.00003116559,0.0000386917,0.0023568925],"study_design_scores_gemma":[0.00001353437,0.0004814305,0.77423793,0.000013730316,0.000052117757,0.0016271555,0.0004474964,0.0014423982,0.21882252,0.00009852162,0.0027475944,0.000015635134],"about_ca_topic_score_codex":0.00049215445,"about_ca_topic_score_gemma":0.00090127584,"teacher_disagreement_score":0.00055529835,"about_ca_system_score_codex":0.00011868459,"about_ca_system_score_gemma":0.00009805545,"threshold_uncertainty_score":0.0016061664},"labels":[],"label_agreement":null},{"id":"W2145249035","doi":"10.1002/path.1761","title":"Dysregulation of hedgehog signalling predisposes to synovial chondromatosis","year":2005,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Musculoskeletal synovial abnormalities and treatments","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Lunenfeld-Tanenbaum Research Institute; University of Toronto; SickKids Foundation; Mount Sinai Hospital","funders":"University of Toronto","keywords":"Hedgehog; Hedgehog signaling pathway; Indian hedgehog; GLI3; Synovial chondromatosis; GLI1; Biology; GLI2; Cancer research; Repressor; Cell biology; Medicine; Transcription factor; Pathology; Genetics; Signal transduction; Temporomandibular joint; Gene","score_opus":0.013199805325781118,"score_gpt":0.2743956064506669,"score_spread":0.2611958011248858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145249035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985996,0.0002947015,0.0005861403,0.000014189569,0.000004578014,0.000009745541,0.00007008016,0.000032056778,0.0003889937],"genre_scores_gemma":[0.9991806,0.00018670547,0.00023841606,0.000012052985,0.000003800537,0.0000048486586,0.000069773196,0.000007724835,0.00029615892],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99968076,0.00006717979,0.000036779802,0.00007568038,0.000087548055,0.000052031977],"domain_scores_gemma":[0.99957794,0.000096697135,0.00015529274,0.00003294686,0.000023119415,0.00011407678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017156599,0.0004881481,0.00046047047,0.0009609373,0.0002159282,0.00027245784,0.00013942545,0.00037201567,0.0025264637],"category_scores_gemma":[0.0004907879,0.0003482309,0.0002683352,0.0002890834,0.0003297507,0.00013235144,0.0003505664,0.0003618756,0.00038600972],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006061129,0.00006329133,0.018959532,0.00005210549,0.000030170699,0.0040815976,0.000082727216,0.000060013557,0.97382665,0.000085184125,0.00006762871,0.0020849812],"study_design_scores_gemma":[0.00009511085,0.0023048755,0.62467504,0.00004290614,0.00017819989,0.07000112,0.00043333627,0.001281647,0.29858628,0.0002709536,0.0020827493,0.000047822643],"about_ca_topic_score_codex":0.00042193092,"about_ca_topic_score_gemma":0.0004895707,"teacher_disagreement_score":0.0025264637,"about_ca_system_score_codex":0.00014458156,"about_ca_system_score_gemma":0.0001344931,"threshold_uncertainty_score":0.008451879},"labels":[],"label_agreement":null},{"id":"W2147721514","doi":"10.1002/path.4361","title":"Triggering receptor expressed on myeloid cells‐1 (<scp>TREM</scp>‐1) improves host defence in pneumococcal pneumonia","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Inflammation biomarkers and pathways","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Pneumococcal pneumonia; Immunology; Innate immune system; Chemokine; Bronchoalveolar lavage; Immune system; Pneumonia; Biology; Sepsis; Myeloid; Receptor; Pneumococcal infections; Microbiology; Medicine; Lung; Antibiotics; Internal medicine","score_opus":0.009244271671539076,"score_gpt":0.2074669401410445,"score_spread":0.19822266846950543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147721514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963175,0.0019197478,0.00065901026,0.000119725686,0.000080210564,0.0000354058,0.0002197387,0.000100051155,0.00054855854],"genre_scores_gemma":[0.9946215,0.0018178694,0.0012905115,0.00015181807,0.000043085856,0.000060346163,0.0004412019,0.000019905596,0.0015538032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998801,0.00002405504,0.000013351006,0.000015583399,0.00002817664,0.00003875574],"domain_scores_gemma":[0.99987566,0.000009014872,0.000034751403,0.000009232404,0.000009004219,0.00006226268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001788449,0.000377243,0.0006362485,0.00021649308,0.0001290113,0.00022304154,0.00022417151,0.0003940969,0.0010429701],"category_scores_gemma":[0.00016250057,0.00011177964,0.00027507133,0.000112484064,0.00024254207,0.00024321431,0.0002038977,0.00085275184,0.00025647818],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004244891,0.0007482959,0.00034543648,0.00019058168,0.000024226343,0.00016036835,0.000019840494,0.00018161823,0.9820003,0.00009733931,0.0002615427,0.011725496],"study_design_scores_gemma":[0.0012842161,0.036609147,0.027942203,0.000064245956,0.00024938863,0.0018725925,0.000065849716,0.001969939,0.92178047,0.00027941875,0.00785003,0.000032501343],"about_ca_topic_score_codex":0.0002631505,"about_ca_topic_score_gemma":0.00036473208,"teacher_disagreement_score":0.0010429701,"about_ca_system_score_codex":0.00011132033,"about_ca_system_score_gemma":0.00022754006,"threshold_uncertainty_score":0.003489077},"labels":[],"label_agreement":null},{"id":"W2149769274","doi":"10.1002/path.2482","title":"The fibrotic phenotype of systemic sclerosis fibroblasts varies with disease duration and severity of skin involvement: reconstitution of skin fibrosis development using a tissue engineering approach","year":2008,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Systemic Sclerosis and Related Diseases","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre Hospitalier de l’Université de Montréal; Université de Montréal; Hôpital du Saint-Sacrement","funders":"Canadian Institutes of Health Research","keywords":"Dermis; Fibrosis; Pathology; Dermal fibroblast; Fibroblast; Connective tissue disease; Skin repair; Medicine; Collagenase; CTGF; Human skin; Wound healing; Biology; Immunology; Cell culture; Internal medicine; Disease; Growth factor; Autoimmune disease","score_opus":0.02679042858184508,"score_gpt":0.21943477612188436,"score_spread":0.19264434754003928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149769274","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960897,0.001177034,0.0021001708,0.000027640841,0.000009841313,0.00002623554,0.000056344736,0.000012893717,0.000500182],"genre_scores_gemma":[0.99396366,0.0008929873,0.004116685,0.000028327875,0.0000112762955,0.000047304955,0.00014544392,0.000005072852,0.0007892506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998197,0.000055706958,0.00001982292,0.000039001556,0.000044032833,0.000021863101],"domain_scores_gemma":[0.9998491,0.00004740338,0.00003667611,0.000025641046,0.000017530856,0.000023618959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036870016,0.00026557897,0.00018115777,0.00024355402,0.000105513354,0.00017991886,0.00010055835,0.00022641105,0.0005831834],"category_scores_gemma":[0.00015678146,0.00012511852,0.00020057263,0.00016817967,0.00013500835,0.0001773025,0.00012228928,0.00031787768,0.00014988385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061253886,0.00002694221,0.00032025552,0.000014704535,0.0000018428191,0.000032260865,0.000014326774,0.000026216068,0.9983335,0.000014021682,0.0000033528156,0.0011513403],"study_design_scores_gemma":[0.00003468958,0.0026907884,0.020354727,0.000011345906,0.000042242486,0.0014332822,0.000076702665,0.0011055117,0.9724057,0.00004354693,0.001793745,0.0000078654375],"about_ca_topic_score_codex":0.00014668674,"about_ca_topic_score_gemma":0.00025246196,"teacher_disagreement_score":0.0005831834,"about_ca_system_score_codex":0.00007143918,"about_ca_system_score_gemma":0.00008327824,"threshold_uncertainty_score":0.0019509196},"labels":[],"label_agreement":null},{"id":"W2149847555","doi":"10.1002/(sici)1096-9896(200002)190:3<234::aid-path600>3.0.co;2-u","title":"Vascular pathology: a pathogenetic challenge for a new millennium","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Venous Thromboembolism Diagnosis and Management","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Relevance (law); Broad spectrum; Pleasure; Pathology; Medicine; Disease; Theme (computing); Neuroscience; Psychology; Political science; Computer science","score_opus":0.022213901679107695,"score_gpt":0.27675655743963146,"score_spread":0.25454265576052376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149847555","genre_codex":"review","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008872861,0.6653016,0.0025284844,0.30495447,0.023357667,0.000010826973,0.00006367724,0.0001268475,0.002769132],"genre_scores_gemma":[0.018701851,0.8190298,0.005049744,0.06605769,0.086427204,0.000054189204,0.00013394929,0.00007660713,0.004468975],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967746,0.0009343896,0.0003836432,0.0004762872,0.0009963387,0.00043465212],"domain_scores_gemma":[0.9830692,0.008877969,0.0011173119,0.0008304805,0.0033668685,0.0027382213],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008631222,0.0014358732,0.0032614046,0.0025033562,0.0027884752,0.008783114,0.0021382377,0.01208533,0.009033545],"category_scores_gemma":[0.010060467,0.0005146818,0.0010352456,0.001379894,0.010487492,0.014283303,0.00539215,0.018313082,0.003420428],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003556794,0.00027017208,0.0019397929,0.006333455,0.00018948241,0.0030331558,0.0015006835,0.0006113284,0.0038051247,0.1402797,0.3869457,0.45473573],"study_design_scores_gemma":[0.000031026455,0.0002489787,0.001132759,0.00422243,0.00006229219,0.0042169406,0.001682266,0.00030810013,0.00037130227,0.102358684,0.88526535,0.00009976777],"about_ca_topic_score_codex":0.0005791448,"about_ca_topic_score_gemma":0.00085421983,"teacher_disagreement_score":0.01208533,"about_ca_system_score_codex":0.0023780502,"about_ca_system_score_gemma":0.0064575677,"threshold_uncertainty_score":0.045646787},"labels":[],"label_agreement":null},{"id":"W2151073109","doi":"10.1002/path.4632","title":"Cross‐species models of human melanoma","year":2015,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cutaneous Melanoma Detection and Management","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Wellcome; Medical Research Council; Medical Research Council Canada; European Research Council; Cancer Research UK; Wellcome Trust","keywords":"Melanoma; Biology; Cancer research","score_opus":0.11882463002085634,"score_gpt":0.37956533609865145,"score_spread":0.2607407060777951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151073109","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010516042,0.99237144,0.0013183872,0.00036616487,0.00029571968,0.00004715033,0.000074942975,0.00004277018,0.004431781],"genre_scores_gemma":[0.009532989,0.9865643,0.0012752863,0.0005002704,0.000184973,0.00006476255,0.00018735787,0.000008237688,0.0016817717],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997334,0.000060372895,0.000035673518,0.000047296704,0.00009865201,0.000024598594],"domain_scores_gemma":[0.9996339,0.00017022644,0.000080454454,0.000022234373,0.00005643478,0.00003664001],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000862683,0.0006757179,0.0009042123,0.0018727784,0.00024741303,0.0006056149,0.0006672868,0.0010428166,0.0027327999],"category_scores_gemma":[0.00066706457,0.00018600909,0.00050173665,0.0007060637,0.00051374565,0.00076615805,0.0005998582,0.001432875,0.0013252691],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020642733,0.00023468591,0.000806681,0.018846923,0.00014322331,0.0019371582,0.00013401364,0.000529375,0.028302109,0.0078756865,0.04261321,0.8983705],"study_design_scores_gemma":[0.000031398034,0.00039740364,0.001794452,0.0038501592,0.00018920602,0.014564361,0.000104711544,0.00017630156,0.0065124608,0.0027301288,0.969613,0.000036353544],"about_ca_topic_score_codex":0.0005093245,"about_ca_topic_score_gemma":0.0009886237,"teacher_disagreement_score":0.0027327999,"about_ca_system_score_codex":0.00036901137,"about_ca_system_score_gemma":0.00040668453,"threshold_uncertainty_score":0.00914216},"labels":[],"label_agreement":null},{"id":"W2155936708","doi":"10.1002/path.4069","title":"Platelet‐derived growth factor receptor‐α promotes lymphatic metastases in papillary thyroid cancer","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Thyroid Cancer Diagnosis and Treatment","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University of Toronto","keywords":"Papillary thyroid cancer; Platelet-derived growth factor receptor; Cancer research; Growth factor receptor; Lymph node; Medicine; Receptor tyrosine kinase; Lymph; Pathology; Tyrosine kinase; Growth factor; Cancer; Thyroid cancer; Receptor; Biology; Internal medicine","score_opus":0.02634305992068398,"score_gpt":0.2944853268689483,"score_spread":0.2681422669482643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155936708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99878293,0.00040885335,0.00016978286,0.000017064782,0.0000032886187,0.000005520051,0.00005119911,0.000013721959,0.00054757204],"genre_scores_gemma":[0.9990282,0.00022661344,0.00009450059,0.000008568065,0.0000023117004,0.0000064138435,0.000101185935,0.0000026523953,0.0005295892],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99994755,0.000006619211,0.0000030926344,0.000008863482,0.000020023987,0.000013812524],"domain_scores_gemma":[0.9999293,0.0000150806845,0.000016162727,0.0000059067966,0.000012585852,0.00002087981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008959301,0.00008299332,0.00017485634,0.00016845796,0.00013767918,0.00017031387,0.00006397667,0.00008778524,0.000889323],"category_scores_gemma":[0.0001373904,0.00013381307,0.00014977212,0.0001779349,0.00012454786,0.00006725251,0.00011832457,0.00021000039,0.00020550341],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038008872,0.000047883335,0.02641672,0.000046808076,0.000015657823,0.00049143855,0.000089265246,0.00008619996,0.96963084,0.000050293795,0.0001452335,0.002599669],"study_design_scores_gemma":[0.000055116754,0.0009898685,0.80726415,0.000007787106,0.000093112794,0.0038204195,0.00027503257,0.0014792136,0.18251552,0.00014529434,0.0033462364,0.0000082612205],"about_ca_topic_score_codex":0.0022757158,"about_ca_topic_score_gemma":0.002873449,"teacher_disagreement_score":0.0022757158,"about_ca_system_score_codex":0.00024129926,"about_ca_system_score_gemma":0.00026196495,"threshold_uncertainty_score":0.004524946},"labels":[],"label_agreement":null},{"id":"W2155991810","doi":"10.1002/1096-9896(200011)192:3<313::aid-path694>3.0.co;2-b","title":"Lumican and decorin are differentially expressed in human breast carcinoma","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Proteoglycans and glycosaminoglycans research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shriners Hospitals for Children - Canada; University of Manitoba","funders":"","keywords":"Lumican; Decorin; Proteoglycan; Biglycan; Biology; Stroma; Breast cancer; Breast carcinoma; Molecular biology; Pathology; Immunohistochemistry; Cancer; Extracellular matrix; Cell biology; Medicine; Immunology; Genetics","score_opus":0.010460641838694128,"score_gpt":0.2600640436527816,"score_spread":0.24960340181408744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155991810","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99733424,0.0014057435,0.00020269347,0.000016255957,0.00000486375,0.00000554925,0.00013055697,0.000011943032,0.0008881066],"genre_scores_gemma":[0.9967824,0.00065529085,0.00039705393,0.000026497779,0.000006811705,0.000017213139,0.0004178579,0.0000046843315,0.0016921681],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99990785,0.000012846434,0.000005523128,0.000016314483,0.000030223073,0.000027178065],"domain_scores_gemma":[0.99992394,0.00001817802,0.00001708711,0.000007405613,0.000015319825,0.000018004712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008518299,0.00010019825,0.00014045413,0.00057711045,0.00019274322,0.00028478634,0.000050184193,0.00017607398,0.0008134945],"category_scores_gemma":[0.00023146694,0.000113279195,0.00007782901,0.0003487314,0.00015582076,0.00009237409,0.00014494748,0.00009845599,0.0002321209],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062453205,0.000023781786,0.01527797,0.000062365856,0.000016825097,0.00074401946,0.00018136203,0.000048661455,0.9771199,0.00009962853,0.000099645345,0.0057013268],"study_design_scores_gemma":[0.000047858044,0.00040994986,0.76796484,0.00001966028,0.00007573474,0.006433881,0.0005477718,0.00095779554,0.2144288,0.00024647347,0.008843124,0.000024126028],"about_ca_topic_score_codex":0.00077885087,"about_ca_topic_score_gemma":0.0010770157,"teacher_disagreement_score":0.0008134945,"about_ca_system_score_codex":0.00018025146,"about_ca_system_score_gemma":0.00010287918,"threshold_uncertainty_score":0.0027213693},"labels":[],"label_agreement":null},{"id":"W2159594258","doi":"10.1002/path.4149","title":"Active proteases in nephrotic plasma lead to a podocin‐dependent phosphorylation of <scp>VASP</scp> in podocytes via protease activated receptor‐1","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal Diseases and Glomerulopathies","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Kids Kidney Research; Kidney Research UK; Global Institute for Water Security, University of Saskatchewan","keywords":"Proteases; Podocin; Protease; Chemistry; Receptor; Microbiology; Podocyte; Cell biology; Biochemistry; Biology; Kidney; Enzyme; Endocrinology","score_opus":0.0174310085192894,"score_gpt":0.27491716479306416,"score_spread":0.25748615627377475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159594258","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99903333,0.00034120367,0.00025679922,0.000023317027,0.0000055469377,0.00000657914,0.000084698106,0.000014744413,0.00023383042],"genre_scores_gemma":[0.9989229,0.00014948231,0.00029847448,0.00002674917,0.0000037372304,0.000010892179,0.00018587217,0.0000032657501,0.00039863162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988735,0.000024417119,0.000011447959,0.000023502324,0.000027786235,0.000025460562],"domain_scores_gemma":[0.99992645,0.000013692622,0.000020293859,0.0000066205616,0.0000052406976,0.000027744847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013337447,0.00015426155,0.00018710643,0.00015173049,0.00011742962,0.00019147694,0.00009542101,0.00020451959,0.0015166973],"category_scores_gemma":[0.00014689166,0.00011762541,0.00018145322,0.000118769174,0.00015819182,0.00009178421,0.00014242493,0.0003962929,0.00016756867],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030539863,0.000029842464,0.0011992091,0.000034908215,0.000008190477,0.0001867288,0.000020780752,0.000025792533,0.9972614,0.000030236915,0.000045760473,0.00085167657],"study_design_scores_gemma":[0.00007084038,0.0011913537,0.123614594,0.000006848438,0.00004560084,0.0033301415,0.000081247796,0.0008318259,0.8693738,0.000080136524,0.0013663262,0.0000071372674],"about_ca_topic_score_codex":0.0003866809,"about_ca_topic_score_gemma":0.0005578099,"teacher_disagreement_score":0.0015166973,"about_ca_system_score_codex":0.0001408436,"about_ca_system_score_gemma":0.00009891578,"threshold_uncertainty_score":0.0050738454},"labels":[],"label_agreement":null},{"id":"W2160018036","doi":"10.1002/path.4414","title":"Boveri at 100: Theodor Boveri and genetic predisposition to cancer","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"","keywords":"Biology; Cancer; Cancer genetics; Theme (computing); Inheritance (genetic algorithm); Genetics; Gene","score_opus":0.005523128501388818,"score_gpt":0.2423105810468182,"score_spread":0.2367874525454294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160018036","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013508385,0.33139676,0.00068432477,0.5946967,0.059816346,0.000016176717,0.00008798648,0.000064181586,0.011886675],"genre_scores_gemma":[0.047092684,0.32050574,0.0020157213,0.4006937,0.16599278,0.00008227418,0.00013592029,0.00018827073,0.06329291],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99805874,0.0006979642,0.00012326565,0.00036142548,0.0005692732,0.00018929927],"domain_scores_gemma":[0.9961085,0.0022715416,0.0002218479,0.00014115707,0.0006470137,0.0006099698],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031072665,0.00090181053,0.001142461,0.0021410538,0.0021347732,0.00347495,0.0010343125,0.0046741515,0.0040016347],"category_scores_gemma":[0.01134654,0.00039115816,0.0006189437,0.0012199333,0.004509694,0.005085764,0.0017664882,0.014377145,0.002949198],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117425436,0.000076518554,0.00160968,0.00028609,0.00004857131,0.00061703427,0.0011037597,0.00006189066,0.0002518817,0.048290703,0.88036054,0.0671759],"study_design_scores_gemma":[0.000025603787,0.00004464928,0.0015800383,0.0008818409,0.000035411995,0.0021227603,0.00055672857,0.000109915236,0.00033909417,0.051966988,0.942286,0.000051013067],"about_ca_topic_score_codex":0.0047985725,"about_ca_topic_score_gemma":0.004088559,"teacher_disagreement_score":0.0047985725,"about_ca_system_score_codex":0.0020178382,"about_ca_system_score_gemma":0.0016637848,"threshold_uncertainty_score":0.016433},"labels":[],"label_agreement":null},{"id":"W2160490952","doi":"10.1002/path.4504","title":"<scp>DMP1β</scp>, a splice isoform of the tumour suppressor <i><scp>DMP1</scp></i> locus, induces proliferation and progression of breast cancer","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer-related Molecular Pathways","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Arius3D (Canada)","funders":"National Cancer Institute; National Institutes of Health; American Cancer Society; U.S. Department of Defense","keywords":"DMP1; Cancer research; Biology; Breast cancer; Molecular biology; Cancer; Genetics; Gene","score_opus":0.009126227308485,"score_gpt":0.2606800602288531,"score_spread":0.2515538329203681,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160490952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9209275,0.006263366,0.012404806,0.0003039511,0.00014315004,0.00008725437,0.0529706,0.0016930168,0.005206372],"genre_scores_gemma":[0.88787156,0.004399247,0.009459292,0.0004153553,0.000072049734,0.00014617822,0.09163635,0.00057626894,0.005423649],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99965906,0.000020212765,0.000022333159,0.000119928176,0.00014112527,0.000037385955],"domain_scores_gemma":[0.99976164,0.000037178303,0.000106940686,0.000028219527,0.000029049439,0.000037030386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019903028,0.0005329052,0.00040046065,0.0009614386,0.0003426624,0.0004468441,0.000259075,0.00031400778,0.0023994218],"category_scores_gemma":[0.00029743282,0.0002251824,0.00043807898,0.0010157209,0.0002822708,0.00020228831,0.0003579345,0.00060394476,0.0015125053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026962988,0.000018590115,0.007377411,0.00031825385,0.00007475786,0.00044723882,0.000051360483,0.0003665384,0.975726,0.00029614664,0.0019985219,0.013055622],"study_design_scores_gemma":[0.00006339417,0.0002780897,0.12569997,0.00009571677,0.00020537908,0.0052316627,0.00013964718,0.0044016615,0.7824703,0.00073286373,0.0806273,0.000053989126],"about_ca_topic_score_codex":0.0014099329,"about_ca_topic_score_gemma":0.0022531021,"teacher_disagreement_score":0.0023994218,"about_ca_system_score_codex":0.00036806066,"about_ca_system_score_gemma":0.00029329566,"threshold_uncertainty_score":0.008026838},"labels":[],"label_agreement":null},{"id":"W2161701941","doi":"10.1002/path.2744","title":"The biological and clinical value of p53 expression in pelvic high‐grade serous carcinomas","year":2010,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":172,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; BC Cancer Agency; Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"","keywords":"Serous fluid; Immunohistochemistry; Tissue microarray; Clear cell; Population; Serous carcinoma; Pathology; Carcinoma; P53 expression; Stage (stratigraphy); Proportional hazards model; Medicine; Oncology; Biology; Cancer; Ovarian cancer; Internal medicine","score_opus":0.03558695500464818,"score_gpt":0.33885982973606055,"score_spread":0.30327287473141235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161701941","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992539,0.00037900204,0.000053217347,0.000012591765,0.0000015665736,0.0000033319068,0.00008614294,0.0000020868401,0.00020805906],"genre_scores_gemma":[0.99977046,0.00008738317,0.000025840514,0.0000037484217,0.0000021662445,0.0000017340253,0.00007090305,5.688674e-7,0.00003713975],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99970204,0.00009032311,0.000028703955,0.000053306754,0.00006958733,0.000055944434],"domain_scores_gemma":[0.9988656,0.00038214546,0.00035828954,0.00012012407,0.00011730202,0.00015656499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077509735,0.00018960511,0.00023922157,0.0011043793,0.00033574455,0.00066835416,0.00025283312,0.00032573193,0.0009446393],"category_scores_gemma":[0.0025753654,0.00018901829,0.00017247845,0.0009006616,0.0006229969,0.00021674132,0.00034017937,0.00023449505,0.00012284819],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005253762,0.0000101840415,0.99542564,0.000014550325,0.000026716803,0.0002182523,0.000050285467,0.00007884442,0.0013233531,0.000011228083,0.000024216582,0.002291355],"study_design_scores_gemma":[0.000006091938,0.000054201708,0.9990227,0.0000036469887,0.000018024479,0.00043239983,0.000067135195,0.000115166986,0.00019554036,0.000020135622,0.0000632649,0.0000017519233],"about_ca_topic_score_codex":0.0047502783,"about_ca_topic_score_gemma":0.0069335643,"teacher_disagreement_score":0.0047502783,"about_ca_system_score_codex":0.00037268086,"about_ca_system_score_gemma":0.0003108075,"threshold_uncertainty_score":0.00944525},"labels":[],"label_agreement":null},{"id":"W2166375802","doi":"10.1002/path.4152","title":"An α‐E‐catenin (<i><scp>CTNNA1</scp></i>) mutation in hereditary diffuse gastric cancer","year":2012,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":221,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"National Health and Medical Research Council; Australian Research Council","keywords":"Germline mutation; Cancer; CDH1; Exome sequencing; Germline; Cancer research; Signet ring cell; Exome; Mutation; Biology; Genetics; Cadherin; Medicine; Gene; Adenocarcinoma","score_opus":0.00982759387935445,"score_gpt":0.2646225854391922,"score_spread":0.25479499155983776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166375802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99856734,0.00043236103,0.00027590577,0.000023802637,0.000004858825,0.0000073663537,0.00007609938,0.00001568705,0.00059646677],"genre_scores_gemma":[0.99946696,0.0001233606,0.00021284838,0.0000119762335,0.000004297372,0.000001952832,0.000047349266,0.0000031328425,0.00012806937],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99985707,0.000018548588,0.000016209811,0.00005340947,0.000034492234,0.000020337942],"domain_scores_gemma":[0.9998173,0.000042464555,0.000051602063,0.0000120720115,0.000018110193,0.000058434554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017039882,0.00042238084,0.00024821967,0.0011862811,0.00033379995,0.00032095943,0.00018475443,0.0005739918,0.001265663],"category_scores_gemma":[0.0004007885,0.00020521616,0.0001918492,0.00065075944,0.00044937583,0.00014718791,0.00033190774,0.00024007248,0.00022002595],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014382312,0.000117525015,0.47413322,0.00019060883,0.00017025443,0.09561654,0.0004665819,0.0007546033,0.41126844,0.0002631546,0.00051657757,0.015064153],"study_design_scores_gemma":[0.00007021703,0.00029473432,0.81061083,0.000039202572,0.00021197663,0.14959683,0.0002435052,0.0020622676,0.03480178,0.00025190835,0.0017947117,0.000021961328],"about_ca_topic_score_codex":0.0022095353,"about_ca_topic_score_gemma":0.0023205557,"teacher_disagreement_score":0.0022095353,"about_ca_system_score_codex":0.00027671058,"about_ca_system_score_gemma":0.00014919741,"threshold_uncertainty_score":0.004393339},"labels":[],"label_agreement":null},{"id":"W2169816054","doi":"10.1002/path.4465","title":"Identification of a novel <i> <scp>FN1–FGFR1</scp> </i> genetic fusion as a frequent event in phosphaturic mesenchymal tumour","year":2014,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Fibroblast Growth Factor Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":161,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Alexandra Hospital; University of Alberta","funders":"National Center of Excellence for Clinical Trial and Research","keywords":"Mesenchymal stem cell; Identification (biology); Computational biology; Event (particle physics); Biology; Medicine; Genetics","score_opus":0.009058960069061643,"score_gpt":0.2679549824147094,"score_spread":0.25889602234564774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169816054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99693274,0.00019280994,0.0021360035,0.0000588018,0.000011787129,0.000025655458,0.000082923114,0.00004266392,0.00051665975],"genre_scores_gemma":[0.99888676,0.00007410151,0.0007671836,0.000027611024,0.00001043158,0.0000076294555,0.00007394274,0.0000061584205,0.00014606844],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99977833,0.00001679063,0.000023394085,0.00006832631,0.000057960086,0.000055289973],"domain_scores_gemma":[0.9995914,0.00012712783,0.00015275355,0.000031630283,0.00003058383,0.00006643983],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012172561,0.00029408414,0.00022424228,0.00060742284,0.00031139952,0.00029672022,0.00022688453,0.0007710581,0.0009980348],"category_scores_gemma":[0.0007079344,0.0001761766,0.00034253535,0.00027923516,0.0005515311,0.00017358402,0.0002713936,0.00040940373,0.00025405464],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029557446,0.00003808647,0.0376872,0.00011877015,0.00003942609,0.19916937,0.00042442096,0.00037717115,0.75433165,0.00042380654,0.00022117521,0.0068733385],"study_design_scores_gemma":[0.00004603195,0.00038350085,0.12005942,0.000021021908,0.00012911887,0.6701016,0.00031236344,0.0036904982,0.20123218,0.0003773225,0.0036138387,0.000033195338],"about_ca_topic_score_codex":0.00076680887,"about_ca_topic_score_gemma":0.00064315606,"teacher_disagreement_score":0.0009980348,"about_ca_system_score_codex":0.00033139045,"about_ca_system_score_gemma":0.0001279944,"threshold_uncertainty_score":0.0033386946},"labels":[],"label_agreement":null},{"id":"W2251029942","doi":"10.1002/path.4689","title":"Divergent impact of Toll‐like receptor 2 deficiency on repair mechanisms in healthy muscle versus Duchenne muscular dystrophy","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research","keywords":"Innate immune system; Duchenne muscular dystrophy; Skeletal muscle; Inflammation; TLR2; Macrophage; Macrophage polarization; Biology; Medicine; Immunology; Pathology; Immune system; Endocrinology; Internal medicine; Genetics","score_opus":0.012738475615655517,"score_gpt":0.2726083887837342,"score_spread":0.2598699131680787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2251029942","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990977,0.00038843782,0.00012837845,0.00002100617,0.000005565757,0.0000068775526,0.00010717729,0.000010111768,0.000234769],"genre_scores_gemma":[0.9978339,0.00033571135,0.00040641148,0.00006421998,0.0000060918946,0.000037249854,0.0002741274,0.000010513299,0.0010317395],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996488,0.00006326321,0.00007122411,0.000095593765,0.00005941017,0.00006159379],"domain_scores_gemma":[0.9995571,0.00005866472,0.00011398306,0.000028374494,0.000021248252,0.00022065995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027831714,0.0004561326,0.0005661206,0.00052328216,0.00014682626,0.00033761119,0.00019647373,0.0005505846,0.0015023513],"category_scores_gemma":[0.0002650273,0.0002381379,0.00023996536,0.00014609015,0.00045319434,0.00023641584,0.00030370595,0.0004579653,0.00019809748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011429508,0.000099941055,0.0021460403,0.00006308201,0.000013385361,0.00028816762,0.000037534195,0.00003728624,0.995,0.000041209965,0.00001924733,0.0011112518],"study_design_scores_gemma":[0.00043279215,0.0073942235,0.40518656,0.00009615214,0.00018304805,0.0063482965,0.0005942544,0.0013403562,0.57614183,0.00027290886,0.001968502,0.000041119038],"about_ca_topic_score_codex":0.00031508403,"about_ca_topic_score_gemma":0.00060004235,"teacher_disagreement_score":0.0015023513,"about_ca_system_score_codex":0.00026219757,"about_ca_system_score_gemma":0.0001523594,"threshold_uncertainty_score":0.0050259233},"labels":[],"label_agreement":null},{"id":"W2293835123","doi":"10.1002/path.4713","title":"Stromal β‐catenin overexpression contributes to the pathogenesis of renal dysplasia","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Stromal cell; Stroma; Biology; Pathology; Dysplasia; Ectopic expression; Population; Cell biology; Cancer research; Medicine; Immunology; Cell culture; Immunohistochemistry; Genetics","score_opus":0.005839883690785517,"score_gpt":0.2290233291861606,"score_spread":0.22318344549537508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2293835123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931211,0.0042061736,0.0013430103,0.000103951206,0.000008486641,0.000018558887,0.00009344591,0.00009202796,0.0010133098],"genre_scores_gemma":[0.9962966,0.0022894798,0.0005953036,0.00003413656,0.00000968262,0.000008165972,0.000067801506,0.000007962686,0.0006909016],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998869,0.000016744845,0.0000123532345,0.000026807409,0.00004163293,0.000015627335],"domain_scores_gemma":[0.99984825,0.000014833507,0.0000729087,0.000009690688,0.000011581291,0.000042662537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016448098,0.00038155497,0.00029158458,0.0006696194,0.00016368415,0.00028417556,0.00018868425,0.00042862538,0.00087111787],"category_scores_gemma":[0.0001350225,0.00022593643,0.00021351101,0.0002785465,0.0003409321,0.00014560118,0.00029415815,0.0003713787,0.00018583128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021261751,0.00003978961,0.00804523,0.00012915178,0.00002498991,0.0029414257,0.00005792855,0.00017031573,0.9842523,0.00034354394,0.000081713944,0.0037010845],"study_design_scores_gemma":[0.00015015954,0.0006829679,0.3951828,0.00009013873,0.00030892118,0.042905908,0.00028312296,0.004422748,0.5427616,0.0011370218,0.012039787,0.000034816036],"about_ca_topic_score_codex":0.0005719548,"about_ca_topic_score_gemma":0.0006410958,"teacher_disagreement_score":0.00087111787,"about_ca_system_score_codex":0.00021932638,"about_ca_system_score_gemma":0.00021795095,"threshold_uncertainty_score":0.0029141903},"labels":[],"label_agreement":null},{"id":"W2299647584","doi":"10.1002/path.4717","title":"Overexpression of <scp>MYB</scp> drives proliferation of <scp>CYLD</scp>‐defective cylindroma cells","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer and Skin Lesions","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; Cancerfonden; Göteborgs Universitet; Breakthrough Breast Cancer; Cancer Research UK; Wellcome Trust; Medical Research Council; Wellcome","keywords":"Cylindroma; MYB; Germline; Biology; Cancer research; Germline mutation; Fusion gene; Mutation; Gene; Pathology; Genetics; Transcription factor; Medicine","score_opus":0.014247538428836769,"score_gpt":0.27517899931411927,"score_spread":0.2609314608852825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2299647584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963883,0.00043080538,0.00086194894,0.00004761053,0.000012121197,0.000023485747,0.00047525883,0.00007463904,0.0016858269],"genre_scores_gemma":[0.99545103,0.00026620063,0.0012989187,0.000025950729,0.0000052587175,0.0000311412,0.0008600306,0.000024811694,0.0020367487],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99968815,0.00005325383,0.000035594832,0.000052745054,0.00011287509,0.00005743156],"domain_scores_gemma":[0.99978894,0.000056330387,0.000042638778,0.000037002028,0.0000133465055,0.000061703264],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019467423,0.00021537613,0.00020175378,0.00032843926,0.00019676957,0.0003657211,0.00017493605,0.00025754314,0.0018419183],"category_scores_gemma":[0.00014015526,0.0001941502,0.00020871268,0.00028048333,0.00025702064,0.0001508761,0.0002976203,0.00048041472,0.0008599119],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041979085,0.00001910971,0.00040604357,0.000018536504,0.0000032451746,0.000091154114,0.000019828929,0.000069736285,0.9986873,0.00007228379,0.00005686295,0.0005138411],"study_design_scores_gemma":[0.000029668663,0.00034459194,0.016553441,0.000007810165,0.00001114344,0.0009779579,0.00007677265,0.0037254016,0.9750236,0.000050026378,0.0031930148,0.0000065176573],"about_ca_topic_score_codex":0.001208278,"about_ca_topic_score_gemma":0.0016389561,"teacher_disagreement_score":0.0018419183,"about_ca_system_score_codex":0.00033610163,"about_ca_system_score_gemma":0.00019463767,"threshold_uncertainty_score":0.0061618686},"labels":[],"label_agreement":null},{"id":"W2346777892","doi":"10.1002/path.4738","title":"GRP78 and CHOP modulate macrophage apoptosis and the development of bleomycin‐induced pulmonary fibrosis","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; Heart and Stroke Foundation of Canada","keywords":"Bleomycin; Unfolded protein response; CHOP; Pulmonary fibrosis; Fibrosis; Apoptosis; Macrophage; Idiopathic pulmonary fibrosis; Pathology; Population; Cancer research; Medicine; Biology; Lung; Internal medicine","score_opus":0.007569607175114586,"score_gpt":0.2270516895385004,"score_spread":0.21948208236338582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2346777892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969614,0.0014813688,0.0008084429,0.00009636293,0.000027759801,0.000022377986,0.000079923724,0.000029421366,0.0004928818],"genre_scores_gemma":[0.99728024,0.0007473369,0.00058980566,0.000062945495,0.00001703846,0.00004430631,0.0001055856,0.000007248959,0.0011456019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997929,0.000053925818,0.000020107529,0.000024422961,0.00004366604,0.00006507798],"domain_scores_gemma":[0.99984086,0.00002134028,0.000051926483,0.000013140118,0.000013481395,0.000059184502],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017324174,0.0002995515,0.00040225795,0.00026110018,0.000114874754,0.0001791803,0.00014436858,0.00047914515,0.0009180781],"category_scores_gemma":[0.00016096306,0.00012653862,0.0002489722,0.00010491529,0.00027128545,0.00020848474,0.00018064462,0.0006615329,0.00022832875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006901449,0.00009139473,0.0002315346,0.000024870058,0.000005681859,0.00006071294,0.000011597793,0.00003931453,0.9978859,0.000021082682,0.000018379735,0.00091938],"study_design_scores_gemma":[0.00010350216,0.0029260677,0.016349504,0.000012224163,0.000042170243,0.0004998815,0.000064001186,0.0013670458,0.97762316,0.0000915348,0.00091268896,0.000008203127],"about_ca_topic_score_codex":0.00016099989,"about_ca_topic_score_gemma":0.00021592432,"teacher_disagreement_score":0.0009180781,"about_ca_system_score_codex":0.00011791156,"about_ca_system_score_gemma":0.00009793714,"threshold_uncertainty_score":0.0030713081},"labels":[],"label_agreement":null},{"id":"W2363071033","doi":"10.1002/path.4741","title":"Wnt disruption in colorectal polyps – the traditional serrated adenoma enters the fray","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"Cancer Research UK; Wellcome Trust; Wellcome","keywords":"Wnt signaling pathway; Colorectal cancer; Cancer research; Adenoma; Biology; Pathological; Pathogenesis; Lesion; Mouse model of colorectal and intestinal cancer; Hyperplastic Polyp; Cancer; Pathology; Bioinformatics; Medicine; Gene; Genetics","score_opus":0.02964150706215142,"score_gpt":0.2695204127224479,"score_spread":0.23987890566029652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2363071033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8273904,0.13466048,0.005961162,0.01087024,0.0006580677,0.0000508428,0.00034760838,0.0002692371,0.019792035],"genre_scores_gemma":[0.94902474,0.037723277,0.004243659,0.0009340908,0.00035998688,0.000011189768,0.0001678298,0.000042434745,0.007492782],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998061,0.000040621035,0.000025030045,0.00003760122,0.00006327545,0.000027342297],"domain_scores_gemma":[0.9997749,0.00003340039,0.00009835652,0.000023035158,0.000018338329,0.000051962885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037763594,0.0002682784,0.00029331745,0.0007850309,0.0003633394,0.0007700495,0.00017006948,0.0006958303,0.0010287125],"category_scores_gemma":[0.00058533595,0.00015892372,0.0002184036,0.0004502604,0.0016907993,0.00091805443,0.00067892997,0.0006475664,0.0004574454],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002416917,0.000131065,0.104290344,0.0017024687,0.00017529898,0.031151235,0.0018227533,0.00087468006,0.504346,0.051743977,0.007045274,0.2943],"study_design_scores_gemma":[0.00013853754,0.0016933545,0.36480767,0.00071595225,0.00019016802,0.20834574,0.0025831286,0.0017832131,0.14974713,0.033621676,0.23623365,0.00013973558],"about_ca_topic_score_codex":0.0010631542,"about_ca_topic_score_gemma":0.002154726,"teacher_disagreement_score":0.0010631542,"about_ca_system_score_codex":0.00056172605,"about_ca_system_score_gemma":0.0005008185,"threshold_uncertainty_score":0.0040756464},"labels":[],"label_agreement":null},{"id":"W2461816685","doi":"10.1002/path.4750","title":"Activating <i>KRAS</i> mutations are characteristic of oncocytic sinonasal papilloma and associated sinonasal squamous cell carcinoma","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Head and Neck Surgical Oncology","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"KRAS; Papilloma; Inverted papilloma; Carcinogenesis; Biology; Sanger sequencing; Cancer research; Mutation; Carcinoma; Germline mutation; Pathology; Cancer; Medicine; Gene; Genetics","score_opus":0.019186661830259837,"score_gpt":0.2706588076442973,"score_spread":0.25147214581403743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2461816685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817085,0.00015303218,0.00029397663,0.000009310715,0.0000038610447,0.000008492173,0.000042610063,0.000009879308,0.0013079984],"genre_scores_gemma":[0.9994555,0.0001269654,0.00022606093,0.000010033205,0.000003220606,0.0000030261172,0.00007111424,0.0000026470848,0.00010152622],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997067,0.000030221778,0.00005804676,0.000044544253,0.000091565766,0.000068909685],"domain_scores_gemma":[0.999482,0.00011589725,0.00017734198,0.00007368592,0.0000778124,0.000073403404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023927084,0.00026024127,0.0002520699,0.0010807315,0.00027045957,0.00048066775,0.00014826268,0.00028102082,0.001266354],"category_scores_gemma":[0.0010632079,0.00021074116,0.00018916215,0.0005924925,0.00058627344,0.00020037919,0.00029159765,0.000160068,0.0003985771],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025787074,0.000023667531,0.91096544,0.00007045277,0.00004038261,0.017884223,0.00017060543,0.00016186832,0.06066244,0.00011995135,0.00014096663,0.0095022265],"study_design_scores_gemma":[0.000009408079,0.00010459225,0.8670367,0.000024226816,0.00006516391,0.11458733,0.0005135038,0.0006445318,0.015003653,0.00018456181,0.0018151322,0.000011227131],"about_ca_topic_score_codex":0.0009409891,"about_ca_topic_score_gemma":0.0021649234,"teacher_disagreement_score":0.001266354,"about_ca_system_score_codex":0.00012711756,"about_ca_system_score_gemma":0.00020436733,"threshold_uncertainty_score":0.0042364},"labels":[],"label_agreement":null},{"id":"W2474149346","doi":"10.1002/path.4765","title":"Developmental transcription factor <scp>NFIB</scp> is a putative target of oncofetal <scp>miRNAs</scp> and is associated with tumour aggressiveness in lung adenocarcinoma","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Toronto; University Health Network; Vancouver General Hospital; Canadian Centre for Applied Research in Cancer Control; Occupational Cancer Research Centre; Princess Margaret Cancer Centre; BC Cancer Agency","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Canadian Cancer Society; Canada Foundation for Innovation","keywords":"Transcription factor; Biology; microRNA; Adenocarcinoma; Cancer research; Genetics; Cancer; Gene","score_opus":0.010428375084874535,"score_gpt":0.2355428410386289,"score_spread":0.22511446595375437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2474149346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.981167,0.009824342,0.0035555593,0.00018534432,0.000034584846,0.000021497292,0.0019202558,0.00015006763,0.0031413347],"genre_scores_gemma":[0.9942895,0.0015409596,0.0014546851,0.000060238868,0.000014736513,0.000018123937,0.0011140234,0.00002310292,0.0014845622],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998449,0.000018261948,0.000016039327,0.000046342066,0.000054039367,0.000020339829],"domain_scores_gemma":[0.9997725,0.000031716132,0.00012099218,0.000011020483,0.00002683675,0.000036965586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013637077,0.00021412506,0.0002152355,0.00043165206,0.00022138262,0.000358719,0.00009337663,0.0002330212,0.0013195907],"category_scores_gemma":[0.00032681596,0.0001237712,0.00016345347,0.00035104965,0.00021538147,0.00009294106,0.00017921721,0.00031829134,0.0003623449],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083414826,0.000027766415,0.08228022,0.00028534426,0.00009664212,0.0014893094,0.00011974191,0.00023446005,0.88776135,0.00043353692,0.00095664756,0.02548084],"study_design_scores_gemma":[0.000030586463,0.00025778933,0.7570268,0.00004657918,0.00014077249,0.012365282,0.00012760487,0.0015685619,0.20544212,0.00047668794,0.022496106,0.00002112638],"about_ca_topic_score_codex":0.0010173531,"about_ca_topic_score_gemma":0.00097504345,"teacher_disagreement_score":0.0013195907,"about_ca_system_score_codex":0.0002657814,"about_ca_system_score_gemma":0.00022702041,"threshold_uncertainty_score":0.004414439},"labels":[],"label_agreement":null},{"id":"W2503069845","doi":"10.1002/path.4768","title":"Fibroblast growth factor‐1 attenuates <scp>TGF</scp>‐β1‐induced lung fibrosis","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Fibroblast Growth Factor Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Canadian Pulmonary Fibrosis Foundation; Fondation du Souffle; Pulmonary Fibrosis Foundation","keywords":"Pulmonary fibrosis; Myofibroblast; Fibroblast; Idiopathic pulmonary fibrosis; Cancer research; Transforming growth factor; Fibrosis; Extracellular matrix; Fibroblast growth factor; Biology; Chemistry; Cell biology; Pathology; Medicine; Lung; In vitro; Internal medicine; Biochemistry","score_opus":0.015672174560416592,"score_gpt":0.2681070799835385,"score_spread":0.2524349054231219,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2503069845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993208,0.0033059411,0.0012228945,0.00023597965,0.0001500954,0.000060620656,0.00033341267,0.00018631671,0.0012965836],"genre_scores_gemma":[0.9908538,0.003153574,0.0013330119,0.0001274856,0.000056954494,0.0000933372,0.00072064204,0.000027124777,0.0036341192],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999874,0.000020323667,0.00001269956,0.000014851596,0.000034006796,0.000044045097],"domain_scores_gemma":[0.9998902,0.00001798564,0.000026932265,0.000008758816,0.000014493895,0.000041593343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017321466,0.0005650594,0.00050673157,0.00033650015,0.00016794873,0.0002372769,0.00021307092,0.000422521,0.001000208],"category_scores_gemma":[0.00013102367,0.000120798606,0.00040919497,0.00016262116,0.00029471202,0.00021761912,0.00013187664,0.001215304,0.00021248683],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007290452,0.00042914224,0.00012045369,0.0000950346,0.000009842903,0.000048107802,0.00001705717,0.00009875629,0.9948835,0.000055636305,0.00011513376,0.003398324],"study_design_scores_gemma":[0.00018362622,0.004312189,0.0042639426,0.000018612354,0.00004071974,0.00018726384,0.000042956024,0.0008197914,0.9872028,0.000037097285,0.0028835256,0.000007403525],"about_ca_topic_score_codex":0.0012272098,"about_ca_topic_score_gemma":0.0021097108,"teacher_disagreement_score":0.0012272098,"about_ca_system_score_codex":0.00029452608,"about_ca_system_score_gemma":0.00045763818,"threshold_uncertainty_score":0.0033459663},"labels":[],"label_agreement":null},{"id":"W2503311213","doi":"10.1002/path.4773","title":"P/<scp>CAF</scp> mediates <scp>PAX3–FOXO1</scp>‐dependent oncogenesis in alveolar rhabdomyosarcoma","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kootenay Association for Science & Technology","funders":"National Medical Research Council; St. Baldrick's Foundation","keywords":"Alveolar rhabdomyosarcoma; MyoD; Cancer research; FOXO1; Gene silencing; Carcinogenesis; Histone acetyltransferase; Biology; Rhabdomyosarcoma; Cancer; Chromatin; Medicine; Cell biology; Myocyte; Internal medicine; Signal transduction; Myogenesis; Pathology; Genetics; Sarcoma","score_opus":0.011274546970442573,"score_gpt":0.24884811368567106,"score_spread":0.23757356671522847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2503311213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99136025,0.0016543678,0.0029145959,0.00025647748,0.000044612054,0.000036404806,0.00062013685,0.00018716646,0.0029260425],"genre_scores_gemma":[0.99493164,0.00073410675,0.0008662166,0.000042386284,0.000007505042,0.00003255484,0.0006011361,0.000036333964,0.0027480659],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998568,0.00002567144,0.000011276034,0.000025190591,0.000045766035,0.000035249454],"domain_scores_gemma":[0.9998956,0.000023203176,0.000026256861,0.000017875682,0.0000076184656,0.000029499966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023850394,0.00025613437,0.00022816357,0.00021936862,0.00024154832,0.00028623967,0.00019190848,0.00023474627,0.0034262044],"category_scores_gemma":[0.00013551445,0.00013349993,0.0002301549,0.00013865555,0.00037301373,0.00022075998,0.00030114932,0.0005936991,0.0012617649],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001226604,0.000032117117,0.00024254546,0.000033272885,0.0000047056565,0.00012621745,0.00001526016,0.00007256558,0.99796826,0.00015720018,0.00013895589,0.0010861397],"study_design_scores_gemma":[0.00002700463,0.00025819,0.005862331,0.000006964857,0.000010777562,0.00078625063,0.000045231056,0.0010955054,0.98750967,0.00008698433,0.004306429,0.0000046443765],"about_ca_topic_score_codex":0.0010208299,"about_ca_topic_score_gemma":0.0016088708,"teacher_disagreement_score":0.0034262044,"about_ca_system_score_codex":0.0002546228,"about_ca_system_score_gemma":0.0003292999,"threshold_uncertainty_score":0.011461735},"labels":[],"label_agreement":null},{"id":"W2511058727","doi":"10.1002/path.4783","title":"Impact of oviductal versus ovarian epithelial cell of origin on ovarian endometrioid carcinoma phenotype in the mouse","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Cancer Institute; National Institutes of Health","keywords":"Biology; Ovarian carcinoma; Oviduct; Epithelium; Ovary; Cancer research; Ovarian cancer; Metastasis; Phenotype; Gene; Endocrinology; Cancer","score_opus":0.033236398000871546,"score_gpt":0.31147376269329125,"score_spread":0.2782373646924197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2511058727","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98675716,0.0023499485,0.004180201,0.0003316012,0.00007865184,0.00013528229,0.0018525362,0.0002067997,0.004107929],"genre_scores_gemma":[0.9840571,0.0014211832,0.0034604531,0.00019049608,0.000018775272,0.00017485887,0.001407774,0.00013720302,0.009132174],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932146,0.00010795186,0.000085463755,0.00015839442,0.0001701747,0.00015671771],"domain_scores_gemma":[0.99931204,0.00012997325,0.00019809278,0.00012306302,0.000047500114,0.00018929891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053796254,0.00053352985,0.00033688726,0.0013662772,0.0002757212,0.00072613073,0.0004960563,0.0009917978,0.002033692],"category_scores_gemma":[0.00028990506,0.00040848565,0.00054232316,0.0003493582,0.0005942678,0.00056583306,0.0005148678,0.0015010615,0.0006911393],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032561182,0.00008851364,0.00040189564,0.000041011728,0.0000066676457,0.00009897481,0.000045069384,0.00006961489,0.9971571,0.00036744293,0.00005806682,0.0013400558],"study_design_scores_gemma":[0.00010154748,0.0013066833,0.008238959,0.00003942674,0.00005092254,0.0006918414,0.00015582221,0.0009637433,0.98194355,0.00015127572,0.0063376212,0.00001855362],"about_ca_topic_score_codex":0.0011074165,"about_ca_topic_score_gemma":0.0016079617,"teacher_disagreement_score":0.002033692,"about_ca_system_score_codex":0.0005613589,"about_ca_system_score_gemma":0.00032475646,"threshold_uncertainty_score":0.0068033338},"labels":[],"label_agreement":null},{"id":"W2532566113","doi":"10.1002/path.4822","title":"Hepcidin knockout mice spontaneously develop chronic pancreatitis owing to cytoplasmic iron overload in acinar cells","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Iron Metabolism and Disorders","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"RWTH Aachen University; Ministry of Health, British Columbia; Deutsche Forschungsgemeinschaft","keywords":"Hepcidin; Ferroportin; Endocrinology; Internal medicine; Hereditary hemochromatosis; Knockout mouse; Hemochromatosis; DMT1; Pancreatitis; Oxidative stress; Chemistry; Inflammation; Biology; Medicine; Biochemistry","score_opus":0.008643135965916633,"score_gpt":0.2461196625943304,"score_spread":0.2374765266284138,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2532566113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97747266,0.0016995892,0.010565672,0.00032179212,0.00013312946,0.000172985,0.0045924783,0.0013400617,0.0037015658],"genre_scores_gemma":[0.95993346,0.001762634,0.008854147,0.00029767552,0.00006197274,0.00050769426,0.0055175503,0.00045858265,0.02260625],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996099,0.00003796682,0.000049691636,0.00015331054,0.00008350602,0.00006559834],"domain_scores_gemma":[0.9992642,0.00006878872,0.00031224484,0.000073051255,0.00003668438,0.00024508263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026081182,0.0010698497,0.0005317744,0.0010993802,0.00029485617,0.0005099946,0.00034425882,0.0008100851,0.005969359],"category_scores_gemma":[0.00021757056,0.0005550946,0.00050898205,0.0004733886,0.0006222572,0.00038697204,0.00054146507,0.0015509297,0.001630749],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043603516,0.00010296472,0.00092909165,0.0000652783,0.000016381155,0.0006120037,0.00005072228,0.000027579908,0.99571544,0.00016908877,0.00018860033,0.0016867591],"study_design_scores_gemma":[0.00028896914,0.0015791015,0.052144554,0.00007689147,0.000110045876,0.011599343,0.00021338566,0.0011698855,0.9160204,0.0005713645,0.016184995,0.000041126594],"about_ca_topic_score_codex":0.00024836528,"about_ca_topic_score_gemma":0.00042607624,"teacher_disagreement_score":0.005969359,"about_ca_system_score_codex":0.00030359073,"about_ca_system_score_gemma":0.00018617623,"threshold_uncertainty_score":0.019969463},"labels":[],"label_agreement":null},{"id":"W2542459035","doi":"10.1002/path.4780","title":"A focused compound screen highlights the significance of epidermal growth factor receptor signalling in chordoma pathogenesis","year":2016,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Bone Tumor Diagnosis and Treatments","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Chordoma; Epidermal growth factor receptor; Medicine; EGFR inhibitors; Cancer research; Clinical significance; Pathological; Oncology; Internal medicine; Cancer; Pathology","score_opus":0.03227890468316075,"score_gpt":0.26496279091311187,"score_spread":0.23268388622995112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2542459035","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0745073,0.042025596,0.0037540752,0.7994764,0.016212428,0.00018998672,0.0005406048,0.00045624626,0.06283746],"genre_scores_gemma":[0.5074376,0.058203112,0.0059269643,0.32372743,0.052706778,0.00016231976,0.0004650151,0.000086421394,0.051284306],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9995467,0.000096936485,0.00006866619,0.000053235475,0.00015895163,0.00007556019],"domain_scores_gemma":[0.9988856,0.000570422,0.00009840614,0.00005365527,0.00021817932,0.00017390294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057580747,0.0004696881,0.00052859704,0.0003570903,0.00066199736,0.0010499752,0.00038957357,0.0053972797,0.0027697654],"category_scores_gemma":[0.003129433,0.00016101063,0.00039749267,0.00027418815,0.0007425376,0.000778876,0.00041447452,0.004156425,0.002372929],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008520913,0.00031180005,0.008433131,0.0007589604,0.00006010751,0.19803897,0.00049699296,0.0010234953,0.0245218,0.011152219,0.5078862,0.2464642],"study_design_scores_gemma":[0.00039244723,0.0014030258,0.005926847,0.00035942625,0.00009507169,0.22241975,0.00040195868,0.0025593615,0.011933905,0.012868494,0.7415753,0.00006428959],"about_ca_topic_score_codex":0.00058605947,"about_ca_topic_score_gemma":0.001305902,"teacher_disagreement_score":0.0053972797,"about_ca_system_score_codex":0.0011251464,"about_ca_system_score_gemma":0.00047126328,"threshold_uncertainty_score":0.00926578},"labels":[],"label_agreement":null},{"id":"W2544826661","doi":"10.1002/path.4830","title":"Emerging new tools to study and treat muscle pathologies: genetics and molecular mechanisms underlying skeletal muscle development, regeneration, and disease","year":2016,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Stem Cell Network; Muscular Dystrophy Association","keywords":"Skeletal muscle; Regeneration (biology); Regenerative medicine; Induced pluripotent stem cell; Biology; Stem cell; Myocyte; Neuroscience; Bioinformatics; Medicine; Anatomy; Cell biology; Genetics; Embryonic stem cell; Gene","score_opus":0.045854318027477484,"score_gpt":0.32854305438921155,"score_spread":0.2826887363617341,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2544826661","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008427886,0.998197,0.00031342797,0.00030249942,0.0002193397,0.0000045578536,0.000010190378,0.000014268451,0.0008544872],"genre_scores_gemma":[0.00045134441,0.99818414,0.00039671917,0.00019431779,0.00018310103,0.000007425846,0.000020756801,0.0000026725832,0.00055963657],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99975425,0.00003871053,0.000035534977,0.000043006305,0.000101905054,0.00002661914],"domain_scores_gemma":[0.99964213,0.00015789001,0.00004346064,0.000015415977,0.00009046321,0.00005061689],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076242536,0.0010990985,0.0015766241,0.0031563218,0.00032386815,0.0010081845,0.0011499089,0.0016167831,0.003674804],"category_scores_gemma":[0.0007271625,0.0003101527,0.0005361798,0.001882452,0.0009672509,0.0018096167,0.0010637783,0.002975904,0.0035084079],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064097745,0.0000923468,0.00015916566,0.01103202,0.000058288577,0.00034604105,0.00007523388,0.00029148124,0.005486418,0.0057860045,0.023501316,0.9531076],"study_design_scores_gemma":[0.000015994334,0.00009096248,0.0006286895,0.002548792,0.00006442533,0.0025309524,0.000058897946,0.0000782094,0.00097467116,0.0032477374,0.9897389,0.000021693415],"about_ca_topic_score_codex":0.00051451696,"about_ca_topic_score_gemma":0.0010149586,"teacher_disagreement_score":0.003674804,"about_ca_system_score_codex":0.0006191036,"about_ca_system_score_gemma":0.0008690035,"threshold_uncertainty_score":0.012293458},"labels":[],"label_agreement":null},{"id":"W2555649773","doi":"10.1002/path.4849","title":"Genetics meets pathology – an increasingly important relationship","year":2016,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill Genome Centre","funders":"Medical Research Council","keywords":"Genomics; Disease; Data science; Medicine; Biology; Pathology; Computer science; Genetics; Genome","score_opus":0.03699468308120326,"score_gpt":0.328038146602963,"score_spread":0.29104346352175975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2555649773","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000078539015,0.9831104,0.00030387344,0.0127377445,0.0018765592,0.0000023596704,0.000009079957,0.000017383501,0.0018640842],"genre_scores_gemma":[0.0016552055,0.98452365,0.0005578567,0.007145102,0.004636924,0.0000055995083,0.000016083908,0.000009529792,0.0014499691],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987488,0.00044125266,0.00012327089,0.00017770656,0.00042280662,0.000086221255],"domain_scores_gemma":[0.9961365,0.0026502954,0.00025978347,0.00014646124,0.0004743109,0.0003326429],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002507138,0.0011975745,0.0020630488,0.0031600373,0.0007206382,0.0032786764,0.0011567274,0.005580188,0.008491873],"category_scores_gemma":[0.0036598567,0.00047143246,0.0005623201,0.0033874922,0.0047091013,0.0077377823,0.0023249127,0.008956551,0.0045441007],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006725129,0.000062985135,0.00046032708,0.007517497,0.0001258367,0.0015712474,0.0004974852,0.0002766577,0.0014131769,0.06429604,0.17871645,0.744995],"study_design_scores_gemma":[0.000008421283,0.000026885162,0.0003375139,0.00264498,0.00001995818,0.003864593,0.0001938244,0.000029321745,0.00008558668,0.016267167,0.97650564,0.000016153119],"about_ca_topic_score_codex":0.00093624485,"about_ca_topic_score_gemma":0.0011790993,"teacher_disagreement_score":0.008491873,"about_ca_system_score_codex":0.0021020144,"about_ca_system_score_gemma":0.0023261793,"threshold_uncertainty_score":0.02840817},"labels":[],"label_agreement":null},{"id":"W2555713683","doi":"10.1002/path.4845","title":"Vessel co‐option is common in human lung metastases and mediates resistance to anti‐angiogenic therapy in preclinical lung metastasis models","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Angiogenesis and VEGF in Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":209,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Sunnybrook Hospital; University of Toronto","funders":"Breakthrough Breast Cancer; Semmelweis Egyetem; Breast Cancer Campaign; Hungarian Scientific Research Fund; National Institute for Health and Care Research","keywords":"Angiogenesis; Metastasis; Sunitinib; Lung; Medicine; Lung cancer; Pathology; Blood vessel; Cancer; Cancer research; Internal medicine; Renal cell carcinoma","score_opus":0.038729233400823536,"score_gpt":0.35355231115196467,"score_spread":0.31482307775114116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2555713683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874035,0.002017291,0.008299416,0.00008345148,0.000021333048,0.00011255785,0.00027442022,0.00018815354,0.0015998475],"genre_scores_gemma":[0.99460596,0.0005243726,0.0025341157,0.000026107873,0.000008844498,0.00008781417,0.00041729177,0.000018556968,0.001776986],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99959236,0.00008304299,0.000025266081,0.00008615429,0.00012097119,0.0000922534],"domain_scores_gemma":[0.99953425,0.00009583674,0.0001610096,0.00006887638,0.000047534108,0.0000925682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035935978,0.0002756213,0.0003171415,0.0005180239,0.00022699032,0.0003606334,0.00016452569,0.0003953162,0.0016992821],"category_scores_gemma":[0.00034111761,0.00028500392,0.00030985865,0.0002951456,0.00030419364,0.00034350378,0.0003311015,0.00081243936,0.00036632054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002168551,0.000078347904,0.0022701006,0.000061700164,0.000014882878,0.00026311586,0.000035990244,0.00011714811,0.9943684,0.000273172,0.00011432998,0.0021859228],"study_design_scores_gemma":[0.000059008067,0.0016287437,0.053780038,0.000021385127,0.000056824403,0.004019118,0.00014214197,0.005237858,0.9292308,0.00040378838,0.005398184,0.000022018834],"about_ca_topic_score_codex":0.0006920719,"about_ca_topic_score_gemma":0.0011459384,"teacher_disagreement_score":0.0016992821,"about_ca_system_score_codex":0.00022412812,"about_ca_system_score_gemma":0.00023390913,"threshold_uncertainty_score":0.005684614},"labels":[],"label_agreement":null},{"id":"W2557953210","doi":"10.1002/path.4847","title":"The molecular basis of breast cancer pathological phenotypes","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; University Health Network","funders":"U.S. National Library of Medicine; National Institute of Environmental Health Sciences; National Cancer Institute; National Institutes of Health; Klarman Family Foundation","keywords":"Breast cancer; Transcriptome; Biology; Phenotype; Cancer; Pathology; Gene expression profiling; Oncology; Medicine; Computational biology; Bioinformatics; Internal medicine; Gene; Gene expression; Genetics","score_opus":0.007079787646189972,"score_gpt":0.2441299204643393,"score_spread":0.23705013281814932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2557953210","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98387283,0.004809613,0.0063464916,0.0003680803,0.000027909002,0.000040632927,0.002308146,0.00009412832,0.0021322113],"genre_scores_gemma":[0.99284923,0.0016233951,0.0030130225,0.0000873838,0.000019852208,0.000025298255,0.0020522655,0.0000093062645,0.0003201443],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996669,0.00007054775,0.000034244204,0.00008892314,0.000102047954,0.000037396272],"domain_scores_gemma":[0.99958867,0.00007541232,0.00018224608,0.000053669435,0.00007379618,0.000026302203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003761915,0.00019003806,0.0002847983,0.0009316022,0.00018040158,0.0008469978,0.00017371566,0.00022037595,0.00036483275],"category_scores_gemma":[0.0007565427,0.000114843104,0.00022693278,0.0008505852,0.00025086701,0.00029299912,0.00038552863,0.00026857576,0.00016436684],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004170283,0.00005209151,0.43785816,0.0003484076,0.00023639627,0.00064698956,0.0002160985,0.0018694036,0.4891922,0.0014005301,0.00082122756,0.06694152],"study_design_scores_gemma":[0.0000072008434,0.00007521076,0.9636967,0.00003130282,0.000080390346,0.0009317447,0.00018718894,0.0034073128,0.026296148,0.0012223894,0.0040488006,0.0000156794],"about_ca_topic_score_codex":0.000511646,"about_ca_topic_score_gemma":0.00076213555,"teacher_disagreement_score":0.0009316022,"about_ca_system_score_codex":0.0002985035,"about_ca_system_score_gemma":0.0002043841,"threshold_uncertainty_score":0.0021657944},"labels":[],"label_agreement":null},{"id":"W2564173470","doi":"10.1002/path.4864","title":"Derivation of marker gene signatures from human skin and their use in the interpretation of the transcriptional changes associated with dermatological disorders","year":2016,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Medical Research Council Canada","keywords":"Transcriptome; Biology; Context (archaeology); Computational biology; Microarray analysis techniques; Cell type; Microarray; Gene; Gene expression; Bioinformatics; Cell; Genetics","score_opus":0.01451770159174955,"score_gpt":0.24057647034676738,"score_spread":0.22605876875501782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2564173470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4734199,0.019664885,0.25336507,0.000972746,0.00032862884,0.0013611442,0.22975074,0.003221498,0.017915357],"genre_scores_gemma":[0.413555,0.0073797363,0.37295088,0.00054945954,0.0001273642,0.0027633423,0.19905819,0.00078980596,0.002826209],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987685,0.00017656371,0.0001861963,0.00044666638,0.00032550664,0.00009651128],"domain_scores_gemma":[0.99768865,0.0009054524,0.00057698454,0.00024595304,0.00046557252,0.00011740025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017949817,0.0005267527,0.0007559295,0.0056538787,0.00058540714,0.0013142006,0.0004960896,0.00048741765,0.0029601255],"category_scores_gemma":[0.0047571273,0.00022121234,0.0008081251,0.0053975,0.00036842274,0.0006035618,0.0012555467,0.0005958345,0.001824797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010815108,0.00013649346,0.07812377,0.0075076995,0.000548809,0.0018166285,0.0012787192,0.004220683,0.652471,0.0049290415,0.01107467,0.23681098],"study_design_scores_gemma":[0.00012978142,0.0005193376,0.49351075,0.0014513409,0.0011072309,0.00505107,0.0020662444,0.020862686,0.22583884,0.01347999,0.23571067,0.00027203545],"about_ca_topic_score_codex":0.0013038018,"about_ca_topic_score_gemma":0.0036424373,"teacher_disagreement_score":0.0056538787,"about_ca_system_score_codex":0.00042325608,"about_ca_system_score_gemma":0.0014107957,"threshold_uncertainty_score":0.0099025965},"labels":[],"label_agreement":null},{"id":"W2596568799","doi":"10.1002/path.4894","title":"Comparative transcriptome analysis of isogenic cell line models and primary cancers links capicua (<scp>CIC</scp>) loss to activation of the MAPK signalling cascade","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Genome British Columbia; University of British Columbia; BC Cancer Agency","funders":"National Human Genome Research Institute; Canadian Institutes of Health Research; Killam Trusts; National Cancer Institute; BC Cancer Foundation; Vancouver Coastal Health Research Institute; University of British Columbia; BC Cancer Agency; Canada Research Chairs; University of Chicago","keywords":"Transcriptome; Biology; MAPK/ERK pathway; Context (archaeology); Phenotype; Cancer research; Gene; Repressor; Kinase; Genetics; Cell biology; Gene expression","score_opus":0.031504198095667325,"score_gpt":0.270313134432628,"score_spread":0.23880893633696068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2596568799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97019774,0.0015970893,0.01800756,0.00012441934,0.000071243354,0.00007615443,0.0069366656,0.00032408553,0.0026651316],"genre_scores_gemma":[0.96969,0.0014337752,0.010631009,0.0001298736,0.000016185759,0.00020912389,0.012706439,0.00019113482,0.0049925162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997942,0.00001674291,0.000018241857,0.0000678887,0.000069268564,0.000033700097],"domain_scores_gemma":[0.9998273,0.000035339388,0.000048771664,0.000028310662,0.000023171873,0.00003722925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019681685,0.00030381803,0.00035894924,0.00051076664,0.00025358636,0.00042522658,0.0002271029,0.0002547809,0.0010974407],"category_scores_gemma":[0.00013444206,0.0001683857,0.0004018109,0.00045233849,0.0003304456,0.00014216265,0.00027983883,0.00067234575,0.00044335832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005436244,0.000007691081,0.00025685332,0.000023242557,0.000005496929,0.000041023497,0.000013940834,0.0000450153,0.9989826,0.000045894125,0.000041418774,0.0004824288],"study_design_scores_gemma":[0.000011942137,0.00019382457,0.029383456,0.000008145624,0.000057858735,0.0005501192,0.000098186174,0.0018556928,0.96269846,0.000076410906,0.0050524087,0.000013563273],"about_ca_topic_score_codex":0.0012558838,"about_ca_topic_score_gemma":0.0018937764,"teacher_disagreement_score":0.0012558838,"about_ca_system_score_codex":0.00036479137,"about_ca_system_score_gemma":0.00026880403,"threshold_uncertainty_score":0.0036712885},"labels":[],"label_agreement":null},{"id":"W2604130613","doi":"10.1002/path.4631","title":"Dublin Pathology 2015. 8th Joint Meeting of the British Division of the International Academy of Pathology and the Pathological Society of Great Britain &amp; Ireland","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital","funders":"","keywords":"Pathological; Citation; Pathology; Library science; Medicine; Computer science","score_opus":0.059253875060591626,"score_gpt":0.3283846844018668,"score_spread":0.2691308093412752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604130613","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007854618,0.06748683,0.009591103,0.05479765,0.12712853,0.0005041106,0.0023666755,0.0023411158,0.7279294],"genre_scores_gemma":[0.024424987,0.023972075,0.0066743097,0.0047593177,0.012325767,0.0002093956,0.0023532892,0.000493288,0.92478764],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986481,0.00025568675,0.00013950255,0.0002541067,0.00049396337,0.00020860267],"domain_scores_gemma":[0.9966537,0.00022778341,0.00018491359,0.00032202882,0.0014706894,0.0011409817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024540923,0.0011771792,0.0006241844,0.0031971373,0.0011808792,0.0031627738,0.0011065075,0.002441457,0.23830482],"category_scores_gemma":[0.0038830524,0.00078254193,0.0006622479,0.0009908632,0.0012033468,0.001428862,0.002784189,0.0030566787,0.16140789],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008183639,0.000031898548,0.0013127709,0.00025526594,0.000014708028,0.0008238981,0.00006574943,0.0001163224,0.0011398905,0.001981516,0.82776207,0.16641407],"study_design_scores_gemma":[0.0000072835505,0.000020172303,0.0015258339,0.00022301814,0.0000039074066,0.0023623677,0.00006125861,0.00008907425,0.00014386998,0.00044262284,0.9951131,0.000007692977],"about_ca_topic_score_codex":0.0031392362,"about_ca_topic_score_gemma":0.007122562,"teacher_disagreement_score":0.23830482,"about_ca_system_score_codex":0.0023162167,"about_ca_system_score_gemma":0.0025162676,"threshold_uncertainty_score":0.797209},"labels":[],"label_agreement":null},{"id":"W2607808741","doi":"10.1002/path.4912","title":"The histone methyltransferase <scp>EZH2</scp> is a therapeutic target in small cell carcinoma of the ovary, hypercalcaemic type","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Cancer Agency","funders":"National Cancer Institute; Korea National Institute of Health; Canadian Cancer Society Research Institute","keywords":"EZH2; Ovary; Cancer research; Ovarian carcinoma; Histone; Methyltransferase; Cell biology; Chemistry; Biology; Medicine; Methylation; Internal medicine; Biochemistry; Cancer; Ovarian cancer","score_opus":0.020369271909415614,"score_gpt":0.2747584057493719,"score_spread":0.25438913383995626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2607808741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9689905,0.021131074,0.0024059725,0.0010745694,0.00010683704,0.00006549816,0.0003702004,0.00016957385,0.005685711],"genre_scores_gemma":[0.99230486,0.0040937844,0.00081985694,0.00014476042,0.000034886758,0.000023596423,0.00036313685,0.0000106144635,0.002204475],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994993,0.000005103229,0.0000039866336,0.000008660659,0.000020740385,0.000011682166],"domain_scores_gemma":[0.9999713,0.000004881589,0.000007322844,0.0000035164321,0.0000053116137,0.000007681355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008748966,0.00014388812,0.00021044658,0.00019230193,0.00012406189,0.00017976282,0.00012760432,0.00021827515,0.0010211043],"category_scores_gemma":[0.00010910385,0.0000624503,0.00012892006,0.00021353789,0.0001623706,0.000132128,0.00012557702,0.00033698062,0.00018801296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049423944,0.0000443542,0.0027924492,0.00020395091,0.000033914977,0.00066115335,0.00002837123,0.0002716529,0.9568155,0.00031168605,0.0009236265,0.037419237],"study_design_scores_gemma":[0.00017276834,0.0009370634,0.032502502,0.000018109515,0.00009458874,0.004986826,0.000084180494,0.001244129,0.9175012,0.000303993,0.042144597,0.00001001729],"about_ca_topic_score_codex":0.0005727518,"about_ca_topic_score_gemma":0.001408091,"teacher_disagreement_score":0.0010211043,"about_ca_system_score_codex":0.0002824571,"about_ca_system_score_gemma":0.00016912782,"threshold_uncertainty_score":0.0034160018},"labels":[],"label_agreement":null},{"id":"W2613321519","doi":"10.1002/path.4915","title":"Frequent <i><scp>IDH2</scp></i><scp>R172</scp> mutations in undifferentiated and poorly‐differentiated sinonasal carcinomas","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Head and Neck Surgical Oncology","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre","funders":"National Cancer Institute; National Institutes of Health; Cleveland Clinic","keywords":"Sanger sequencing; CDKN2A; Biology; IDH2; KRAS; IDH1; Cancer research; HRAS; Malignancy; Exon; Pathology; Cancer; Mutation; Genetics; Medicine; Gene","score_opus":0.03229819747359364,"score_gpt":0.304968456499097,"score_spread":0.27267025902550335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2613321519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995245,0.00008029121,0.00007423386,0.000003514472,0.0000013103848,0.0000036398433,0.0001039433,0.000004261719,0.00020433392],"genre_scores_gemma":[0.9996921,0.000027673395,0.00007359423,0.0000048649335,0.0000010485886,0.0000026958674,0.00012853839,0.000003135288,0.000066325796],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99969697,0.000035879933,0.000047184247,0.00007883388,0.0000835031,0.00005756998],"domain_scores_gemma":[0.99945277,0.00012290594,0.00017732309,0.00006712964,0.0000687318,0.000111215784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002784679,0.0002201762,0.00021357699,0.0008759429,0.00028405502,0.00039631972,0.00016339099,0.00026925214,0.0011636396],"category_scores_gemma":[0.00074239535,0.00015504415,0.00023013736,0.0004168341,0.00040047267,0.00016076518,0.00029845544,0.00015542175,0.00023475187],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054083153,0.000018935165,0.9084366,0.000029913517,0.000047584115,0.0035449571,0.00023918776,0.00012535788,0.08386052,0.00005532603,0.00009463484,0.0030060955],"study_design_scores_gemma":[0.000011330486,0.000121988596,0.9766491,0.000007820568,0.000047657748,0.008956531,0.00032591715,0.00030208883,0.013077665,0.000055345412,0.00043597538,0.000008592244],"about_ca_topic_score_codex":0.0018045907,"about_ca_topic_score_gemma":0.0027298685,"teacher_disagreement_score":0.0018045907,"about_ca_system_score_codex":0.0002021709,"about_ca_system_score_gemma":0.00016851838,"threshold_uncertainty_score":0.0038927197},"labels":[],"label_agreement":null},{"id":"W2619344667","doi":"10.1002/path.4920","title":"Angioimmunoblastic T‐cell lymphoma: more than a disease of T follicular helper cells","year":2017,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Princess Margaret Cancer Centre; University Health Network","funders":"Leukemia and Lymphoma Society","keywords":"Angioimmunoblastic T-cell lymphoma; Lymphoma; CD20; Cancer research; Biology; Pathology; Follicular dendritic cells; Mutation; Haematopoiesis; T cell; Immunology; Medicine; Stem cell; Antigen-presenting cell; Genetics; Immune system; Gene","score_opus":0.01359494219806796,"score_gpt":0.25539954607315063,"score_spread":0.24180460387508268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619344667","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65232974,0.04998595,0.0061257035,0.20075893,0.0071518957,0.00025631554,0.00031127004,0.00038140512,0.08269882],"genre_scores_gemma":[0.9109845,0.0111608105,0.0017090808,0.029793598,0.03543339,0.00008556412,0.00010798066,0.000052413452,0.0106725255],"study_design_codex":"case_report","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994184,0.00012697557,0.00007493453,0.0001308429,0.00011615333,0.00013276504],"domain_scores_gemma":[0.9987833,0.0006782786,0.00015217195,0.00008754031,0.000120889534,0.00017783952],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006050201,0.0007668966,0.0010254473,0.00062765484,0.0011760684,0.0011851421,0.0005795808,0.0045629377,0.0052166553],"category_scores_gemma":[0.0029131977,0.00041087304,0.00040219203,0.00088170817,0.0011965352,0.002538205,0.0007244422,0.0029647255,0.0020400458],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003516216,0.00015370148,0.0319862,0.000575282,0.000043815988,0.9083268,0.00057214143,0.00029766132,0.00516764,0.005135201,0.020033896,0.027356062],"study_design_scores_gemma":[0.00013388047,0.00012157148,0.008157317,0.00015937837,0.000041502964,0.95934635,0.00034576122,0.0009550607,0.000481348,0.00394823,0.02628819,0.000021376163],"about_ca_topic_score_codex":0.00059302273,"about_ca_topic_score_gemma":0.000792981,"teacher_disagreement_score":0.0052166553,"about_ca_system_score_codex":0.0011931742,"about_ca_system_score_gemma":0.00039986972,"threshold_uncertainty_score":0.017451465},"labels":[],"label_agreement":null},{"id":"W2733225411","doi":"10.1002/path.4934","title":"Clear cell and endometrioid carcinomas: are their differences attributable to distinct cells of origin?","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"Canadian Cancer Society Research Institute; BC Cancer Foundation; Canada Research Chairs; Cancer Research Institute","keywords":"Cell; Clear cell; Cancer research; Pathology; Biology; Carcinoma; Medicine; Genetics","score_opus":0.04241909929608316,"score_gpt":0.28560852003458476,"score_spread":0.24318942073850158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2733225411","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.986968,0.00966743,0.0020751753,0.00017481588,0.00004565954,0.000042017153,0.00014194727,0.00002703598,0.00085798494],"genre_scores_gemma":[0.99411976,0.0029077765,0.0017381186,0.00023919117,0.000058161215,0.00004566532,0.000298341,0.000015589654,0.0005773902],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989183,0.00021128227,0.00014147532,0.00023599705,0.0002893121,0.0002035691],"domain_scores_gemma":[0.99852777,0.00052200636,0.0003515915,0.00019220947,0.00023366773,0.00017276389],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010890939,0.00024661957,0.0006962612,0.001001636,0.00023411194,0.0008376681,0.0005200647,0.0008081991,0.0009234845],"category_scores_gemma":[0.0022856428,0.00030162517,0.00047749642,0.0005204513,0.000697772,0.00089131866,0.0004925515,0.0004596784,0.00039662243],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016562656,0.00015355578,0.21111621,0.0006751923,0.0002827255,0.004009392,0.0015560339,0.00009817639,0.7396955,0.0016231993,0.00023892577,0.038894862],"study_design_scores_gemma":[0.00005640437,0.0006298958,0.92370456,0.00005690745,0.00014017193,0.019016063,0.0012811127,0.00041015196,0.04943116,0.00092693995,0.004302137,0.00004443502],"about_ca_topic_score_codex":0.00049084425,"about_ca_topic_score_gemma":0.0007977563,"teacher_disagreement_score":0.0010890939,"about_ca_system_score_codex":0.00024286509,"about_ca_system_score_gemma":0.00024313084,"threshold_uncertainty_score":0.0057597756},"labels":[],"label_agreement":null},{"id":"W2737015446","doi":"10.1002/path.4946","title":"AT<sub>2</sub>R deficiency mediated podocyte loss via activation of ectopic hedgehog interacting protein (<i>Hhip</i>) gene expression","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Diabetes Association","keywords":"Podocyte; Nephrin; Ectopic expression; Podocin; Cancer research; Biology; Internal medicine; Endocrinology; Kidney; Cell biology; Medicine; Cell culture","score_opus":0.009196158080178124,"score_gpt":0.24562657749879735,"score_spread":0.23643041941861923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2737015446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99333656,0.00060391537,0.0037626575,0.000068148845,0.000034190387,0.00003468571,0.0006850652,0.00016719836,0.0013076046],"genre_scores_gemma":[0.9906499,0.00056079024,0.00255684,0.00006943712,0.000013581721,0.00006301662,0.0007062102,0.000075824464,0.005304407],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996896,0.00003984461,0.000052608033,0.00006477777,0.00008254539,0.00007073698],"domain_scores_gemma":[0.9997607,0.000022416456,0.00009305542,0.000024050814,0.0000144963315,0.00008517367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016346642,0.00051641255,0.0003155879,0.00039271545,0.00012696758,0.00039627985,0.00024600126,0.00031590488,0.0020127648],"category_scores_gemma":[0.00008118211,0.00028723228,0.0003555781,0.00013831908,0.00033022542,0.00023062367,0.00031522618,0.00079500576,0.00067168486],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041946627,0.000008712029,0.00008122885,0.000014575605,0.0000026071432,0.000057392994,0.0000064041446,0.000011356809,0.99959344,0.0000357858,0.000011401444,0.00013510817],"study_design_scores_gemma":[0.000011347607,0.00014689972,0.0043280474,0.0000048942206,0.000017059587,0.00043248743,0.000025863897,0.0003519738,0.993693,0.000019917932,0.00096469803,0.000003789918],"about_ca_topic_score_codex":0.0006294273,"about_ca_topic_score_gemma":0.0009329626,"teacher_disagreement_score":0.0020127648,"about_ca_system_score_codex":0.0002554581,"about_ca_system_score_gemma":0.00018906315,"threshold_uncertainty_score":0.006733358},"labels":[],"label_agreement":null},{"id":"W2737588912","doi":"10.1002/path.4944","title":"Monoamine oxidase A is highly expressed in classical Hodgkin lymphoma","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"National Cancer Institute; Taipei Medical University; Michael Smith Health Research BC; American Society of Hematology","keywords":"Monoamine oxidase A; Dacarbazine; Lymphoma; Clorgyline; Cancer research; Hodgkin's lymphoma; Pathology; Monoamine oxidase B; Biology; Monoamine oxidase; Medicine; Melanoma; Biochemistry; Enzyme","score_opus":0.02782915504216004,"score_gpt":0.30491501428590834,"score_spread":0.2770858592437483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2737588912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98838043,0.009633745,0.0006052135,0.000037154503,0.000010092021,0.000008781682,0.00024835014,0.000034540542,0.0010416547],"genre_scores_gemma":[0.99638957,0.0021879433,0.00048146164,0.000017899853,0.00001376335,0.000005706995,0.0003187163,0.0000041639973,0.0005806915],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998952,0.000015771406,0.000013754451,0.000025977544,0.00002947695,0.000019844376],"domain_scores_gemma":[0.9998129,0.000024256833,0.000082233324,0.000011928518,0.00003628749,0.00003250622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014212159,0.00017070147,0.00015084907,0.0005598062,0.00017147521,0.00029554855,0.00010095717,0.00014889114,0.0007963857],"category_scores_gemma":[0.00020949343,0.00012141782,0.0001330852,0.00039394666,0.00019729805,0.00016165258,0.00018763563,0.00012221992,0.00026066092],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005320574,0.000040834853,0.30315605,0.0003743015,0.00023068667,0.0021520024,0.00022070628,0.000070259644,0.6526612,0.00015554075,0.0003952946,0.040011138],"study_design_scores_gemma":[0.00002110005,0.00037811158,0.91764224,0.000035013934,0.00014144972,0.011243818,0.0003483282,0.00030657602,0.062402956,0.0001747944,0.0072947103,0.0000110374995],"about_ca_topic_score_codex":0.0013956891,"about_ca_topic_score_gemma":0.0020040437,"teacher_disagreement_score":0.0013956891,"about_ca_system_score_codex":0.00020517173,"about_ca_system_score_gemma":0.00008700212,"threshold_uncertainty_score":0.0027751327},"labels":[],"label_agreement":null},{"id":"W2742890901","doi":"10.1002/path.4954","title":"Infectivity in bone marrow from sporadic CJD patients","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; Agence Nationale de la Recherche","keywords":"Infectivity; Bone marrow; Asymptomatic; Virology; Pathological; Disease; Biology; Medicine; Pathology; Creutzfeldt-Jakob Syndrome; Immunology; Virus; Prion protein","score_opus":0.009396994897581,"score_gpt":0.25727357425831515,"score_spread":0.24787657936073415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2742890901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99727374,0.0017127102,0.0001587159,0.000035053796,0.000008698718,0.000018319863,0.00020886504,0.000013584581,0.00057031435],"genre_scores_gemma":[0.9979361,0.0008517417,0.00023366763,0.00008224932,0.00001750022,0.000013484461,0.00049148494,0.0000064817796,0.0003672539],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99982256,0.000031617998,0.000020781357,0.000040974595,0.0000579799,0.000026243904],"domain_scores_gemma":[0.9997527,0.00005044206,0.000054038508,0.000020599131,0.000059184982,0.0000630129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030890948,0.0003663731,0.00032148435,0.0013057771,0.0005455813,0.0005765285,0.00019603361,0.00031881005,0.0015970455],"category_scores_gemma":[0.0010788871,0.00023786604,0.00012773444,0.00042421138,0.00033090523,0.00014380444,0.0005193066,0.0003114877,0.00050363434],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035380675,0.00029043236,0.35818905,0.00033986228,0.00013316111,0.010846087,0.004493916,0.00015676723,0.5909458,0.00032931493,0.0012869299,0.029450702],"study_design_scores_gemma":[0.00024160644,0.002729183,0.9003163,0.00015226756,0.00021802918,0.04103269,0.002269388,0.00046077088,0.0444721,0.0005212521,0.0075356993,0.00005071001],"about_ca_topic_score_codex":0.0015315397,"about_ca_topic_score_gemma":0.0010480953,"teacher_disagreement_score":0.0015970455,"about_ca_system_score_codex":0.00016736254,"about_ca_system_score_gemma":0.0001279046,"threshold_uncertainty_score":0.0053426623},"labels":[],"label_agreement":null},{"id":"W2755990446","doi":"10.1002/path.4939","title":"SOX11 promotes invasive growth and ductal carcinoma <i>in situ</i> progression","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute for Health and Care Research; BC Cancer Agency; Breast Cancer Now; Cancer Research UK; Wellcome Trust; Medical Research Council; Wellcome","keywords":"Ductal carcinoma; CD44; Cancer research; Progenitor cell; Biology; Population; Cancer stem cell; Breast cancer; Cancer; Aldehyde dehydrogenase; Stem cell; Pathology; CD24; Cell; Medicine; Cell biology","score_opus":0.023847620838142413,"score_gpt":0.3012241464979078,"score_spread":0.2773765256597654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2755990446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98187953,0.004160174,0.005412489,0.0003107885,0.000105825,0.00003581832,0.0006454345,0.00028263204,0.007167361],"genre_scores_gemma":[0.9899087,0.002097583,0.000935334,0.000060070422,0.00002111137,0.000014090322,0.0006051071,0.000031420233,0.0063265115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99981815,0.000024161469,0.000013717095,0.00003312278,0.00006613979,0.00004476318],"domain_scores_gemma":[0.99969554,0.000041443353,0.0001005831,0.000022870196,0.000046087644,0.00009349821],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022892494,0.00027912043,0.0001713108,0.00038193804,0.00021356986,0.00062984054,0.00010107546,0.00025612264,0.003872973],"category_scores_gemma":[0.00019100794,0.00017538633,0.00023247948,0.0001995207,0.00032844552,0.00024715156,0.0002532981,0.0005150619,0.0008118934],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002554244,0.00005224299,0.0097561665,0.00017449756,0.000019769082,0.0004144204,0.000114041504,0.00016248404,0.9792275,0.00060422585,0.0004869401,0.008732379],"study_design_scores_gemma":[0.000025077294,0.0004170634,0.092240386,0.00004448515,0.00005219215,0.0024872203,0.00035998435,0.0016040677,0.87742496,0.00030758692,0.025021194,0.000015763137],"about_ca_topic_score_codex":0.0011440188,"about_ca_topic_score_gemma":0.0014733158,"teacher_disagreement_score":0.003872973,"about_ca_system_score_codex":0.0002852241,"about_ca_system_score_gemma":0.0002689058,"threshold_uncertainty_score":0.012956321},"labels":[],"label_agreement":null},{"id":"W2768339478","doi":"10.1002/path.5008","title":"IGF1R signalling in testicular germ cell tumour cells impacts on cell survival and acquired cisplatin resistance","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Testicular diseases and treatments","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; University College London; National Institute for Health and Care Research; NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research","keywords":"Cisplatin; Germ cell; Insulin-like growth factor 1 receptor; Testicular cancer; Cell; Acquired resistance; Cell biology; Cancer research; Biology; Oncology; Cancer; Medicine; Chemotherapy; Genetics; Receptor; Growth factor","score_opus":0.019740132657749834,"score_gpt":0.2816967491206269,"score_spread":0.2619566164628771,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2768339478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938392,0.002613273,0.0007201749,0.000094690266,0.00002979388,0.000023384859,0.00091197144,0.000085870015,0.0016817778],"genre_scores_gemma":[0.9963691,0.0007677294,0.00034068568,0.000056656834,0.000003457302,0.000018522034,0.000844587,0.000009590721,0.0015897396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999039,0.000010703227,0.000007981181,0.000019202344,0.00003461327,0.000023563938],"domain_scores_gemma":[0.99995124,0.000007886502,0.0000096817,0.0000060109023,0.00000849328,0.000016743816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000076412696,0.00014336084,0.00026215182,0.00016723061,0.00010240184,0.0003676404,0.00012936485,0.00018626553,0.0016752076],"category_scores_gemma":[0.00009719972,0.00008187301,0.00019469968,0.00016824093,0.00013165476,0.00012873014,0.00014755636,0.00044837312,0.00035770528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022377147,0.00004560297,0.0023514293,0.00010713894,0.000015558511,0.00021514372,0.00005524173,0.0002115912,0.9920752,0.00013625209,0.00023479311,0.004328303],"study_design_scores_gemma":[0.000056915254,0.0011620217,0.0821073,0.000020464106,0.000066039414,0.0016371364,0.00022312847,0.0023517837,0.8986357,0.00013699132,0.013585099,0.000017436234],"about_ca_topic_score_codex":0.0010766715,"about_ca_topic_score_gemma":0.001424218,"teacher_disagreement_score":0.0016752076,"about_ca_system_score_codex":0.00032301276,"about_ca_system_score_gemma":0.00019309385,"threshold_uncertainty_score":0.005604148},"labels":[],"label_agreement":null},{"id":"W2772425736","doi":"10.1002/path.5019","title":"Loss of CYLD promotes cell invasion via ALK5 stabilization in oral squamous cell carcinoma","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"TGF-β signaling in diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Kurozumi Medical Foundation; Takeda Science Foundation","keywords":"Downregulation and upregulation; Gene knockdown; Cancer research; Epithelial–mesenchymal transition; Biology; Deubiquitinating enzyme; Transforming growth factor; Cell; Cell culture; Cell biology; Ubiquitin; Gene","score_opus":0.015715546979783685,"score_gpt":0.25710713719830836,"score_spread":0.24139159021852466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2772425736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995928,0.0021490664,0.0006347051,0.0000635088,0.000015989888,0.0000135195605,0.0001881422,0.00004684382,0.0009600821],"genre_scores_gemma":[0.99776995,0.0008709947,0.00022763763,0.000027107286,0.0000030284907,0.000015408337,0.00024101824,0.0000043810483,0.00084052817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999099,0.000012578371,0.000011995798,0.000012680168,0.00002874943,0.000024134506],"domain_scores_gemma":[0.99994934,0.0000058194805,0.000017888273,0.000005686114,0.0000054961442,0.000015806441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012071167,0.00021459025,0.00021611544,0.0002752841,0.00022271897,0.0003651094,0.00008729639,0.00019066021,0.0017726735],"category_scores_gemma":[0.0000987631,0.00014016514,0.00025141586,0.00023358306,0.00025324884,0.00019691014,0.00028999132,0.00030038372,0.00039805326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040801757,0.000061453895,0.0020124235,0.00013168958,0.000016715043,0.00032268337,0.00005206837,0.00014627914,0.99316794,0.00021106907,0.0001767714,0.0032930092],"study_design_scores_gemma":[0.00010977567,0.00078196486,0.047440138,0.000025851368,0.00006665353,0.001487989,0.00034350602,0.0023946317,0.93965644,0.00016310124,0.007513778,0.000016250497],"about_ca_topic_score_codex":0.00063936145,"about_ca_topic_score_gemma":0.00086280634,"teacher_disagreement_score":0.0017726735,"about_ca_system_score_codex":0.00030612282,"about_ca_system_score_gemma":0.0003112992,"threshold_uncertainty_score":0.0059301853},"labels":[],"label_agreement":null},{"id":"W2775181055","doi":"10.1002/path.5013","title":"Interleukin‐17 regulates matrix metalloproteinase activity in human pulmonary tuberculosis","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; Imperial College London; Medical Research Council; National Institute for Health and Care Research","keywords":"Stromal cell; Bronchoalveolar lavage; Cytokine; Secretion; Matrix metalloproteinase; Immunology; Immunohistochemistry; Biology; Fibroblast; Interleukin; Molecular biology; Medicine; Pathology; Cell culture; Lung; Internal medicine; Endocrinology","score_opus":0.039756882309287984,"score_gpt":0.37574180808334867,"score_spread":0.3359849257740607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2775181055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9837707,0.0113164475,0.0020601982,0.0002637572,0.00012736717,0.00006120218,0.0009138082,0.0000941392,0.0013923458],"genre_scores_gemma":[0.99273443,0.0030059812,0.0010684112,0.0001212742,0.00004518679,0.00009464952,0.0010049312,0.000018372231,0.001906736],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99971133,0.00008629299,0.00002285159,0.00003654081,0.00005858828,0.00008431484],"domain_scores_gemma":[0.99976474,0.000063554115,0.00005806857,0.000025427647,0.00004029564,0.000047936664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003296143,0.00027519357,0.0002673115,0.00025735144,0.00012219917,0.00041915016,0.00008819908,0.0002671487,0.0028114414],"category_scores_gemma":[0.0003127446,0.0001788461,0.00029273945,0.00023904008,0.00022023627,0.0001128869,0.00017610924,0.0006925912,0.0010245733],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008036845,0.00010677116,0.0023299048,0.00015144057,0.000015755371,0.00022312373,0.000060524748,0.00006707496,0.9927418,0.00004508833,0.00028060173,0.003174252],"study_design_scores_gemma":[0.00023923085,0.0017494026,0.06873416,0.00006864971,0.00009048583,0.001984175,0.0003109349,0.0014440697,0.913045,0.00018988102,0.0121295,0.000014564521],"about_ca_topic_score_codex":0.00020785733,"about_ca_topic_score_gemma":0.00020585641,"teacher_disagreement_score":0.0028114414,"about_ca_system_score_codex":0.00018460986,"about_ca_system_score_gemma":0.00015579893,"threshold_uncertainty_score":0.009405196},"labels":[],"label_agreement":null},{"id":"W2778517291","doi":"10.1002/path.5028","title":"PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective","year":2017,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":248,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System","funders":"U.S. National Library of Medicine; National Cancer Institute; Instituto Tecnológico de Costa Rica","keywords":"Digital pathology; Biology; Computational biology; Epigenomics; Haematoxylin; Pathology; DNA methylation; Transcriptome; Gene; Medicine; Immunohistochemistry; Genetics","score_opus":0.05857605778260066,"score_gpt":0.3589395600660006,"score_spread":0.3003635022833999,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2778517291","genre_codex":"commentary","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0054869745,0.21180797,0.05378282,0.6433387,0.010829386,0.00014932085,0.024385834,0.0068408134,0.043378174],"genre_scores_gemma":[0.08074884,0.40907028,0.28784686,0.14279234,0.028658781,0.00045836344,0.025835361,0.004598287,0.01999081],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971198,0.0010499336,0.0001818107,0.0003847303,0.0011021488,0.00016153113],"domain_scores_gemma":[0.9852319,0.006560458,0.0006912117,0.0018283813,0.003987341,0.0017006847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013089086,0.00093632156,0.00096157606,0.008669685,0.0008967457,0.008612518,0.0025887548,0.0025331057,0.007041912],"category_scores_gemma":[0.023795752,0.0007693047,0.00085781363,0.0065587107,0.0022049334,0.006682357,0.0041100425,0.008440166,0.004672976],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011523605,0.000034021992,0.0046611954,0.0012907604,0.0001232293,0.00032746943,0.0007127226,0.0008334948,0.0021861673,0.036190502,0.66959786,0.2839273],"study_design_scores_gemma":[0.000010831827,0.000019125611,0.0025688643,0.0005479357,0.000030981646,0.000529455,0.0003185329,0.0003356203,0.0004592036,0.02296711,0.9721806,0.000031648822],"about_ca_topic_score_codex":0.0072883526,"about_ca_topic_score_gemma":0.01938593,"teacher_disagreement_score":0.013089086,"about_ca_system_score_codex":0.0022795713,"about_ca_system_score_gemma":0.0041215327,"threshold_uncertainty_score":0.06922257},"labels":[],"label_agreement":null},{"id":"W2781583063","doi":"10.1002/path.5030","title":"Translational control of aberrant stress responses as a hallmark of cancer","year":2018,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Centre for Applied Research in Cancer Control; Occupational Cancer Research Centre; University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research; Terry Fox Research Institute; Michael Smith Health Research BC","keywords":"Biology; Translation (biology); Stress granule; Integrated stress response; EIF4E; Metastasis; Cancer cell; Cancer; Cell biology; Cancer research; Protein biosynthesis; Messenger RNA; Genetics; Gene","score_opus":0.03722868346527243,"score_gpt":0.383116264010048,"score_spread":0.3458875805447756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2781583063","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6644347,0.2816421,0.018003663,0.005481026,0.0022953092,0.0001825188,0.005020153,0.001982235,0.020958262],"genre_scores_gemma":[0.92218083,0.059541315,0.0042595007,0.001261125,0.0007394265,0.00010591331,0.003300455,0.00012440009,0.008487032],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99972683,0.0000378631,0.000030850108,0.00008048335,0.000081965925,0.00004189469],"domain_scores_gemma":[0.9997209,0.00002099361,0.00013673946,0.00002666879,0.00004929127,0.00004545266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002751558,0.00041661938,0.00036428275,0.000636496,0.0003458432,0.0008482044,0.00024742883,0.00052299845,0.001465914],"category_scores_gemma":[0.00030663164,0.00011047267,0.00023172196,0.0008618601,0.0005858844,0.00038743086,0.00046618923,0.0007755037,0.0010241191],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034124506,0.00005413356,0.009611455,0.00076477195,0.000051899475,0.0012635145,0.00021154326,0.00028882927,0.9189395,0.0031735033,0.007685341,0.05761425],"study_design_scores_gemma":[0.000049408198,0.0008799656,0.19947542,0.00025065962,0.00018442233,0.012294936,0.00045653057,0.003352682,0.47945976,0.0070814155,0.29641008,0.00010476327],"about_ca_topic_score_codex":0.00052134006,"about_ca_topic_score_gemma":0.00043236662,"teacher_disagreement_score":0.001465914,"about_ca_system_score_codex":0.00054374867,"about_ca_system_score_gemma":0.00033045816,"threshold_uncertainty_score":0.004903972},"labels":[],"label_agreement":null},{"id":"W2791106312","doi":"10.1002/path.5037","title":"Clear cell carcinomas of the ovary and kidney: clarity through genomics","year":2018,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency; University of British Columbia","funders":"BC Cancer Agency; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Clear cell; PI3K/AKT/mTOR pathway; Biology; Cancer research; Clear cell renal cell carcinoma; Clear cell carcinoma; Cell growth; Cell; Chromatin; Transcriptome; Ovarian cancer; Renal cell carcinoma; Cancer; Pathology; Bioinformatics; Medicine; Cell biology; Gene expression; Signal transduction; Genetics; Gene","score_opus":0.021730460017151558,"score_gpt":0.27482025887758765,"score_spread":0.2530897988604361,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791106312","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00018527205,0.9975787,0.00028228638,0.00056809036,0.00022527306,0.0000043822015,0.000024478533,0.000012741341,0.0011188391],"genre_scores_gemma":[0.0013573674,0.9969163,0.00042798248,0.00028747937,0.0002262787,0.000005001403,0.00006192998,0.0000035212197,0.0007141655],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998173,0.000027051927,0.000029723737,0.00003547092,0.00007182783,0.000018590674],"domain_scores_gemma":[0.9996356,0.00014735213,0.00004636481,0.000016326849,0.0001115009,0.00004287643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063977623,0.00046768948,0.0010531874,0.0024515933,0.00027447613,0.0011231134,0.0006897542,0.0009049799,0.0021819437],"category_scores_gemma":[0.0008677536,0.00027281683,0.00039805804,0.0014432053,0.00067121035,0.0016987029,0.000785341,0.0016498374,0.0014958176],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004687998,0.000024329134,0.0003171449,0.009262712,0.000057224446,0.0004117193,0.00008821068,0.00021350845,0.0017568992,0.005593324,0.026009323,0.95621866],"study_design_scores_gemma":[0.0000064654855,0.000038828224,0.0010604378,0.0019239228,0.000060759605,0.003554854,0.000073251154,0.00005570544,0.0005821077,0.0023911397,0.99023414,0.000018327375],"about_ca_topic_score_codex":0.0010723271,"about_ca_topic_score_gemma":0.0019282309,"teacher_disagreement_score":0.0024515933,"about_ca_system_score_codex":0.00065784797,"about_ca_system_score_gemma":0.0011901599,"threshold_uncertainty_score":0.0072993636},"labels":[],"label_agreement":null},{"id":"W2792181575","doi":"10.1002/path.5057","title":"The molecular pathology of cancer: from pan‐genomics to post‐genomics","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Genomics; Cancer; Molecular pathology; Epigenetics; Computational biology; Biology; Proteomics; Bioinformatics; Medicine; Genome; Genetics; Gene","score_opus":0.006582764588331821,"score_gpt":0.25663791679852643,"score_spread":0.2500551522101946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792181575","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020952777,0.92908305,0.0085673975,0.05130262,0.004253907,0.000016789256,0.00009571829,0.00017786029,0.0044073584],"genre_scores_gemma":[0.022040881,0.936487,0.0074656196,0.016258437,0.013279967,0.00003198688,0.00016259933,0.000107398955,0.00416605],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988166,0.00041430994,0.00009894645,0.0002041456,0.00037228182,0.00009364132],"domain_scores_gemma":[0.9950599,0.0032024772,0.00025596647,0.00039011068,0.00068763574,0.00040379286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0044641034,0.0007096579,0.0011854797,0.0028093543,0.0005968727,0.0049088774,0.00097111665,0.0023388169,0.0027911896],"category_scores_gemma":[0.0047608246,0.0004944842,0.00046873608,0.0019913502,0.005980344,0.00765834,0.0025725854,0.0062099467,0.0012344639],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021432988,0.00006497252,0.0032979266,0.005861711,0.00016494162,0.000703552,0.0016098184,0.00069878495,0.015871981,0.12909845,0.11367086,0.7287426],"study_design_scores_gemma":[0.000011263379,0.00011583977,0.004063695,0.0014410987,0.000053616735,0.0024632872,0.0008007417,0.00042723518,0.003480975,0.10045116,0.8866368,0.000054334494],"about_ca_topic_score_codex":0.00078794407,"about_ca_topic_score_gemma":0.0012087955,"teacher_disagreement_score":0.0049088774,"about_ca_system_score_codex":0.0020887794,"about_ca_system_score_gemma":0.0016065333,"threshold_uncertainty_score":0.023608744},"labels":[],"label_agreement":null},{"id":"W2792856682","doi":"10.1002/path.5044","title":"Resident cell lineages are preserved in pulmonary vascular remodeling","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pulmonary Hypertension Research and Treatments","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Actelion Pharmaceuticals; Institute of Genetics; University of California, Los Angeles; Oesterreichische Nationalbank; University College London; Austrian Science Fund; Deutsche Forschungsgemeinschaft; Pfizer","keywords":"Biology; Cell type; Pathology; Mural cell; Pericyte; Cell biology; Endothelial stem cell; Cell; Vascular smooth muscle; Medicine; Smooth muscle; In vitro; Endocrinology","score_opus":0.040447620594959946,"score_gpt":0.30905058820573805,"score_spread":0.2686029676107781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792856682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99431014,0.0016526001,0.0028297026,0.000020838013,0.000005275794,0.000012133418,0.0001248328,0.000039185757,0.0010052739],"genre_scores_gemma":[0.99623233,0.00058204075,0.0017472226,0.000022951413,0.0000074165796,0.000019298885,0.00019416415,0.000008546467,0.0011860464],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99976844,0.00003482086,0.000011488241,0.000074679076,0.000063181,0.000047431164],"domain_scores_gemma":[0.9998759,0.000019237805,0.000033640492,0.0000198659,0.000024933655,0.000026497504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016577318,0.0001313225,0.00015153125,0.00025214537,0.00016846182,0.0003676474,0.0001015504,0.00019902556,0.00062522304],"category_scores_gemma":[0.0001246069,0.00014201767,0.00011336824,0.00017335874,0.00023205629,0.0001800996,0.00017916801,0.0002800833,0.00022352056],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055287033,0.000007312871,0.0021748121,0.0000132608175,0.0000027227277,0.000036849517,0.000033932443,0.000016397726,0.9959929,0.00006606632,0.0000068836907,0.0015934485],"study_design_scores_gemma":[0.000018303315,0.00067341747,0.16997686,0.000019797548,0.00006925224,0.0016480269,0.00021116843,0.0015916716,0.8207188,0.00032589986,0.0047371527,0.0000095973555],"about_ca_topic_score_codex":0.00027644477,"about_ca_topic_score_gemma":0.0005054927,"teacher_disagreement_score":0.00062522304,"about_ca_system_score_codex":0.00014327667,"about_ca_system_score_gemma":0.00010406666,"threshold_uncertainty_score":0.0020915866},"labels":[],"label_agreement":null},{"id":"W2793042391","doi":"10.1002/path.5043","title":"Novel insights into the disease dynamics of B‐cell lymphomas in the Genomics Era","year":2018,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of British Columbia; University Health Network; BC Cancer Agency","funders":"","keywords":"Somatic evolution in cancer; Disease; Tumor microenvironment; Biology; Tumor progression; Lymphoma; Precision medicine; Cancer; Medicine; Immunology; Genetics; Pathology","score_opus":0.031191147798648122,"score_gpt":0.3081091630063576,"score_spread":0.2769180152077095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793042391","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12252396,0.7399479,0.11085259,0.011495213,0.0007396575,0.000057753783,0.0027282545,0.0010416164,0.010613039],"genre_scores_gemma":[0.4714549,0.44680542,0.066880986,0.0055180816,0.0017506375,0.00009996558,0.0023563043,0.0002528829,0.004880816],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99974793,0.00006308915,0.000014967847,0.00007800089,0.00006710024,0.0000288741],"domain_scores_gemma":[0.99960464,0.00018107645,0.00007080953,0.00003691429,0.00006515135,0.000041469786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009391033,0.0004564625,0.00075219787,0.0013932402,0.00020587054,0.0014159367,0.00035638374,0.0007959468,0.0018253331],"category_scores_gemma":[0.0009363341,0.00024425122,0.0004957105,0.0010848871,0.0007245761,0.0018997787,0.0006441008,0.0015104493,0.0005337658],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039901832,0.00007350926,0.016778585,0.0044462206,0.00030015822,0.0015326147,0.0011148169,0.004523096,0.36162025,0.028733216,0.0104997,0.56997883],"study_design_scores_gemma":[0.00007689268,0.0005783672,0.13850312,0.0018320149,0.0007655262,0.012842617,0.0017383207,0.016786795,0.09004743,0.12180657,0.614765,0.00025731846],"about_ca_topic_score_codex":0.0007804013,"about_ca_topic_score_gemma":0.00087209576,"teacher_disagreement_score":0.0018253331,"about_ca_system_score_codex":0.0007254595,"about_ca_system_score_gemma":0.00052511785,"threshold_uncertainty_score":0.006106317},"labels":[],"label_agreement":null},{"id":"W2793413710","doi":"10.1002/path.5056","title":"The diabetes drug liraglutide reverses cognitive impairment in mice and attenuates insulin receptor and synaptic pathology in a non‐human primate model of Alzheimer's disease","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":243,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Universidade Federal do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; John Simon Guggenheim Memorial Foundation; Human Frontier Science Program; Canadian Institutes of Health Research; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Alzheimer Society","keywords":"Liraglutide; Diabetes mellitus; Neuroscience; Medicine; Disease; Primate; Cognitive impairment; Insulin receptor; Insulin; Alzheimer's disease; Nonhuman primate; Psychology; Endocrinology; Internal medicine; Type 2 diabetes; Biology; Insulin resistance","score_opus":0.020562534415803534,"score_gpt":0.3192512632176017,"score_spread":0.2986887288017982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793413710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9777517,0.009996319,0.0038421198,0.0010824791,0.0003601122,0.00012078191,0.0016585261,0.0012928019,0.0038951233],"genre_scores_gemma":[0.9692779,0.012297408,0.0053943824,0.00068673963,0.00008792275,0.000370304,0.0022817305,0.00012716661,0.009476384],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998342,0.000025672814,0.000023342507,0.000034035125,0.000045085737,0.000037697635],"domain_scores_gemma":[0.999884,0.000006180816,0.00003883163,0.00001673273,0.00001905849,0.000035146986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024605286,0.001086629,0.0008265754,0.000757739,0.0003229007,0.00051652896,0.0006429884,0.0008733257,0.0011766764],"category_scores_gemma":[0.00014466388,0.0003270276,0.00049610424,0.0003608201,0.00043391495,0.00052172726,0.00018893773,0.0021166883,0.00060081604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00163923,0.0005227198,0.00018929789,0.00017529329,0.00005561034,0.0001468545,0.000048709462,0.000109757064,0.9892651,0.00022984344,0.00058301125,0.007034481],"study_design_scores_gemma":[0.00088436715,0.007701896,0.008550917,0.00008314523,0.0002606176,0.00083003374,0.00012854116,0.0017808947,0.96534735,0.00043857828,0.013947981,0.000045622735],"about_ca_topic_score_codex":0.0019193973,"about_ca_topic_score_gemma":0.0029730347,"teacher_disagreement_score":0.0019193973,"about_ca_system_score_codex":0.0004131347,"about_ca_system_score_gemma":0.00066166435,"threshold_uncertainty_score":0.00393641},"labels":[],"label_agreement":null},{"id":"W2793901898","doi":"10.1002/path.5074","title":"<i>Mbd2</i> enables tumourigenesis within the intestine while preventing tumour‐promoting inflammation","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"NIH Clinical Center; Deutsche Forschungsgemeinschaft; Academy of Medical Sciences; Cancer Research UK; Wellcome Trust","keywords":"Inflammation; Immune system; Epigenetics; DNA methylation; Biology; Immunology; Gene silencing; Cancer; Cancer research; Carcinogenesis; Gene; Gene expression; Genetics","score_opus":0.01380491562361421,"score_gpt":0.2524347060241366,"score_spread":0.23862979040052237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793901898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97629863,0.0022840495,0.010218342,0.0008483106,0.00023659512,0.000059886082,0.0034314438,0.0005637031,0.00605903],"genre_scores_gemma":[0.98509014,0.00071900437,0.003386602,0.0003565181,0.000035527348,0.00006956256,0.0016168953,0.0002098575,0.008515805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997397,0.000037274473,0.000030833977,0.00006425519,0.000072245566,0.00005566214],"domain_scores_gemma":[0.999798,0.000028803046,0.00005862796,0.000029524106,0.000015204578,0.000069854665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017663564,0.00042705337,0.00032043175,0.0003275818,0.00022806897,0.00048925256,0.00036941984,0.00048694163,0.0044155456],"category_scores_gemma":[0.00013317152,0.00021773513,0.00038525826,0.00014919968,0.000561801,0.00026630136,0.00033203335,0.0011212775,0.0008374183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000104843464,0.000015757454,0.00012665617,0.000030072293,0.0000041711223,0.000046642755,0.000005159995,0.000053376214,0.99889624,0.00023358705,0.00009881949,0.00038469266],"study_design_scores_gemma":[0.0000232604,0.00017240741,0.0027160197,0.000011098223,0.00001806021,0.00042657898,0.000037137022,0.00079735287,0.9894354,0.000084402694,0.006270356,0.000007960786],"about_ca_topic_score_codex":0.0012184811,"about_ca_topic_score_gemma":0.001366775,"teacher_disagreement_score":0.0044155456,"about_ca_system_score_codex":0.00035389746,"about_ca_system_score_gemma":0.00021314672,"threshold_uncertainty_score":0.0147714615},"labels":[],"label_agreement":null},{"id":"W2793962581","doi":"10.1002/path.5034","title":"The rise of a novel classification system for endometrial carcinoma; integration of molecular subclasses","year":2018,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Endometrial and Cervical Cancer Treatments","field":"Medicine","cited_by":264,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"KWF Kankerbestrijding","keywords":"Carcinoma; Computational biology; Biology; Pathology; Medicine","score_opus":0.13549600297792183,"score_gpt":0.39046537150976035,"score_spread":0.2549693685318385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793962581","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017517142,0.99545896,0.00082124805,0.002030575,0.0005445031,0.000011022712,0.000023843255,0.000011636165,0.0009231599],"genre_scores_gemma":[0.001984297,0.9937453,0.002194662,0.0010179467,0.0005939384,0.000020128522,0.000071074915,0.000004988515,0.00036760911],"study_design_codex":"design_other","study_design_gemma":"systematic_review","domain_scores_codex":[0.9991518,0.00027451722,0.00017987662,0.000118413445,0.00023468568,0.00004074218],"domain_scores_gemma":[0.99830246,0.00081662997,0.00017551839,0.000053520234,0.0005724346,0.00007943993],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027467064,0.00078482594,0.001765204,0.004673857,0.00040863166,0.00173062,0.0013824677,0.0014760435,0.0012416791],"category_scores_gemma":[0.0041696522,0.0003145429,0.00088112993,0.003258529,0.0015892689,0.00292438,0.001150849,0.0035237682,0.0010093022],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054647706,0.000030574236,0.0007691338,0.014539311,0.00011160408,0.00025734495,0.00023298828,0.00037337525,0.0007550869,0.014611118,0.030129643,0.9381352],"study_design_scores_gemma":[0.000021607373,0.000092194045,0.002431138,0.012836648,0.00024931596,0.0041530337,0.00033929772,0.00035492267,0.00030678758,0.009412331,0.96975625,0.000046427544],"about_ca_topic_score_codex":0.0021542718,"about_ca_topic_score_gemma":0.0024040628,"teacher_disagreement_score":0.004673857,"about_ca_system_score_codex":0.0015832719,"about_ca_system_score_gemma":0.0025948551,"threshold_uncertainty_score":0.014526129},"labels":[],"label_agreement":null},{"id":"W2794478976","doi":"10.1002/path.5081","title":"Somatic <i>POLE</i> exonuclease domain mutations are early events in sporadic endometrial and colorectal carcinogenesis, determining driver mutational landscape, clonal neoantigen burden and immune response","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"FP7 Health; Engineering and Physical Sciences Research Council; Medical Research Council; National Institutes of Health; Vlaamse regering; Medical Research Council Canada; European Commission; Department of Health and Aged Care, Australian Government; Fonds Wetenschappelijk Onderzoek; Health Foundation; Wellcome Trust; Cancer Research UK; Academy of Medical Sciences; H2020 European Research Council; Ovarian Cancer Action; National Cancer Institute; KWF Kankerbestrijding; National Institute for Health and Care Research","keywords":"Genome instability; Biology; Carcinogenesis; Somatic cell; Mutation; Germline mutation; DNA mismatch repair; Cancer research; Exome sequencing; Genetics; Cancer; Exonuclease; Exome; Mutation rate; Microsatellite instability; Colorectal cancer; Gene; DNA damage; DNA; Microsatellite; Allele","score_opus":0.0077474786569944765,"score_gpt":0.23862638820960116,"score_spread":0.23087890955260668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794478976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985909,0.00050244224,0.0003596449,0.000014563264,0.000003519809,0.00000426335,0.00015671864,0.000013034135,0.00035489144],"genre_scores_gemma":[0.99897397,0.00017963204,0.00040485646,0.000013818474,0.0000036043416,0.0000025519105,0.00016503799,0.0000039444703,0.0002525417],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999306,0.0000107273345,0.000006290909,0.000019711553,0.000016199583,0.000016386708],"domain_scores_gemma":[0.99982905,0.000023707466,0.00008824502,0.000010936778,0.00001963129,0.000028388033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000122041274,0.000121163255,0.00012241716,0.000310007,0.00012784047,0.00029731344,0.00009277247,0.00020736721,0.001185088],"category_scores_gemma":[0.00026015245,0.00011408529,0.0000921008,0.00016403054,0.00012973086,0.00009361432,0.00012542779,0.00011660637,0.00024042845],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008414935,0.00003859443,0.21596752,0.000101333615,0.000054874152,0.0013894587,0.00014916214,0.00014265861,0.7702523,0.00017531283,0.00020708895,0.01068022],"study_design_scores_gemma":[0.000009194754,0.00015022226,0.92871183,0.000011216207,0.000029429608,0.0060925717,0.00014940173,0.0009759532,0.06202109,0.00012594128,0.0017166402,0.00000654399],"about_ca_topic_score_codex":0.00053324434,"about_ca_topic_score_gemma":0.00082286214,"teacher_disagreement_score":0.001185088,"about_ca_system_score_codex":0.000109131746,"about_ca_system_score_gemma":0.000102351565,"threshold_uncertainty_score":0.0039645433},"labels":[],"label_agreement":null},{"id":"W2799607270","doi":"10.1002/path.5085","title":"Menin regulates the serine biosynthetic pathway in Ewing sarcoma","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; National Cancer Institute; V Foundation for Cancer Research; Electronics Research Laboratory, Volkswagen of America; Leukemia and Lymphoma Society of Canada; National Institutes of Health; National Center for Advancing Translational Sciences; Sidney Kimmel Foundation for Cancer Research; University of Michigan Comprehensive Cancer Center; Leukemia and Lymphoma Society; Alex's Lemonade Stand Foundation for Childhood Cancer; Hyundai Hope On Wheels; Damon Runyon Cancer Research Foundation; Hartwell Foundation; American Association for Cancer Research","keywords":"H3K4me3; Biology; Cancer research; Transcription factor; Gene; Promoter; Gene expression; Genetics","score_opus":0.023300715464437724,"score_gpt":0.2817556018072035,"score_spread":0.25845488634276576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2799607270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943916,0.0015270604,0.002158188,0.00006499721,0.000016407263,0.00001465019,0.00077948504,0.00010595098,0.0009416603],"genre_scores_gemma":[0.995095,0.00038910858,0.0010656341,0.000041569758,0.0000035323849,0.000011259755,0.0007219802,0.0000165989,0.0026553203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992573,0.000009013209,0.0000066630078,0.000027859498,0.00001865795,0.000012031321],"domain_scores_gemma":[0.9999374,0.0000074396203,0.000024144723,0.000005931247,0.000006429521,0.000018575147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008120169,0.0002970848,0.00018299717,0.00018154546,0.00014013614,0.0002558949,0.00008661132,0.00013167057,0.0009090759],"category_scores_gemma":[0.00005167118,0.00011372674,0.00018584669,0.00010695353,0.00016549032,0.00014285432,0.00023030813,0.00026733062,0.0002671334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032848413,0.0000026001233,0.0001704949,0.000009160922,0.0000011978768,0.000016055397,0.000003531133,0.000030810443,0.9994512,0.00003469355,0.000009390768,0.00023799714],"study_design_scores_gemma":[0.0000046971973,0.00005142988,0.014690395,0.0000032619987,0.000006193575,0.00009192032,0.000021035283,0.0009485189,0.98218644,0.000053784628,0.0019393162,0.0000029545822],"about_ca_topic_score_codex":0.00055046205,"about_ca_topic_score_gemma":0.0008048959,"teacher_disagreement_score":0.0009090759,"about_ca_system_score_codex":0.00034758679,"about_ca_system_score_gemma":0.00014743599,"threshold_uncertainty_score":0.0030412078},"labels":[],"label_agreement":null},{"id":"W2801239772","doi":"10.1002/path.5086","title":"Loss of N‐WASP drives early progression in an <i>Apc</i> model of intestinal tumourigenesis","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Medical Research Council; University of Glasgow; Medical Research Council Canada; Cancer Research UK","keywords":"Biology; Adenomatous polyposis coli; Wnt signaling pathway; Cancer research; Colorectal cancer; Cancer; Carcinogenesis; Immunology; Pathology; Cell biology; Signal transduction; Medicine; Genetics","score_opus":0.03364371390557604,"score_gpt":0.3301478629236071,"score_spread":0.29650414901803107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2801239772","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990752,0.00067512813,0.003840972,0.00028264808,0.00009329486,0.00013208052,0.0010806248,0.00034220028,0.00280097],"genre_scores_gemma":[0.9849583,0.00060885353,0.0037796178,0.00010224709,0.000017628281,0.00017658358,0.001053745,0.000105765146,0.009197348],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943763,0.00008302617,0.0000663863,0.00011469342,0.00016359563,0.00013466406],"domain_scores_gemma":[0.99936813,0.000088201305,0.00019636044,0.00007331921,0.00003771947,0.0002362966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034476165,0.00051560247,0.0004232908,0.0008026735,0.00032117832,0.00050946453,0.00036811962,0.0007579485,0.0025168196],"category_scores_gemma":[0.00022162209,0.00039437425,0.0004496025,0.00031315934,0.00054968055,0.00040942145,0.0004959128,0.0016879386,0.00090243464],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024995737,0.00013565888,0.00018001796,0.000030992378,0.0000046652067,0.00012282553,0.000033896802,0.000094863615,0.9982381,0.00020647116,0.000097643504,0.00060496986],"study_design_scores_gemma":[0.00004373596,0.0009777923,0.004037342,0.000014772878,0.00001701623,0.000419227,0.00007606424,0.0021824094,0.9887223,0.0001339845,0.0033624663,0.000012923061],"about_ca_topic_score_codex":0.0010670124,"about_ca_topic_score_gemma":0.001653917,"teacher_disagreement_score":0.0025168196,"about_ca_system_score_codex":0.0005607332,"about_ca_system_score_gemma":0.00038699547,"threshold_uncertainty_score":0.008419573},"labels":[],"label_agreement":null},{"id":"W2803559577","doi":"10.1002/path.5101","title":"Functional molecules in mesothelial‐to‐mesenchymal transition revealed by transcriptome analyses","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Parathyroid Disorders and Treatments","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Kidney Research UK; Medical Research Council Canada; University of Manchester; Wellcome Trust; McMaster University","keywords":"Mesothelial Cell; Immunostaining; Epithelial–mesenchymal transition; Peritoneal dialysis; Cell biology; Fibrosis; Transcriptome; Cancer research; Pathology; Peritoneum; Transforming growth factor; Biology; Downregulation and upregulation; Medicine; Internal medicine; Immunohistochemistry; Gene expression; Gene; Biochemistry","score_opus":0.03905122263637387,"score_gpt":0.3417503986219551,"score_spread":0.30269917598558127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2803559577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97789097,0.004146564,0.005960245,0.00011651944,0.000030929983,0.000044642853,0.009994234,0.00007708085,0.0017387859],"genre_scores_gemma":[0.9712931,0.0033014023,0.008050048,0.00020076236,0.000033777287,0.00020221312,0.013819292,0.00005394996,0.0030454402],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987745,0.00001156246,0.000007988851,0.000045549263,0.000024166542,0.000033227512],"domain_scores_gemma":[0.9998709,0.000031733958,0.000042186453,0.000009640817,0.0000270517,0.00001850374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014371905,0.000179434,0.00030953094,0.0004871071,0.00024830183,0.0005035638,0.00009420112,0.00023654276,0.001077266],"category_scores_gemma":[0.00019012958,0.00012816036,0.00037411042,0.0006420332,0.00018024012,0.00022995881,0.00024209409,0.0004246785,0.0005115131],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014157478,0.000013169335,0.004491193,0.00012411216,0.000019320396,0.00006721047,0.000099343146,0.00011076495,0.9911624,0.00007560786,0.00008285752,0.0036124177],"study_design_scores_gemma":[0.000020728154,0.0006277794,0.7716811,0.00009468394,0.00024289325,0.00080147316,0.0010099582,0.0039094286,0.20662554,0.0006752461,0.014266402,0.000044748434],"about_ca_topic_score_codex":0.00028039323,"about_ca_topic_score_gemma":0.00046344483,"teacher_disagreement_score":0.001077266,"about_ca_system_score_codex":0.000108318294,"about_ca_system_score_gemma":0.00017800803,"threshold_uncertainty_score":0.003603816},"labels":[],"label_agreement":null},{"id":"W2884824167","doi":"10.1002/path.5139","title":"Lynch syndrome – cancer pathways, heterogeneity and immune escape","year":2018,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; Cancer Research UK","keywords":"Microsatellite instability; Lynch syndrome; Colorectal cancer; Cancer; DNA mismatch repair; Pathological; Biology; Oncology; Medicine; Cancer research; Bioinformatics; Microsatellite; Gene; Internal medicine; Genetics; Allele","score_opus":0.06927968329431491,"score_gpt":0.3599667998106388,"score_spread":0.29068711651632384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884824167","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020669677,0.99881727,0.00006965676,0.00036439815,0.00008150934,0.0000016763016,0.000008441149,0.000003792295,0.00044653527],"genre_scores_gemma":[0.0020445066,0.997088,0.00012246882,0.0001573968,0.00019763625,0.0000035420258,0.000021429421,8.8201716e-7,0.0003640513],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99987066,0.000027601609,0.00002172765,0.000025663765,0.00003913346,0.000015324082],"domain_scores_gemma":[0.99975425,0.00011994509,0.00004675709,0.000006639488,0.000042851185,0.000029521125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041922388,0.00045832313,0.0006719665,0.0020141178,0.00023715952,0.0007489353,0.00044871532,0.00082271866,0.0017024315],"category_scores_gemma":[0.00071319664,0.00014180673,0.0002753718,0.0011185479,0.0004902696,0.0008646086,0.00060095836,0.0009724369,0.00065926893],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009057769,0.00003206516,0.0010469821,0.012050967,0.00009323813,0.0012429391,0.00015774794,0.00035217026,0.0022866228,0.0073129726,0.02643414,0.94889957],"study_design_scores_gemma":[0.000011906715,0.00009313351,0.0033365309,0.005134044,0.000099766374,0.01172634,0.0001591965,0.000091674054,0.0006318874,0.0042375927,0.9744546,0.00002332436],"about_ca_topic_score_codex":0.0008391764,"about_ca_topic_score_gemma":0.001177685,"teacher_disagreement_score":0.0020141178,"about_ca_system_score_codex":0.00046373316,"about_ca_system_score_gemma":0.0006745369,"threshold_uncertainty_score":0.005695164},"labels":[],"label_agreement":null},{"id":"W2884919548","doi":"10.1002/path.5137","title":"Biallelic tumour suppressor loss and DNA repair defects in <i>de novo</i> small‐cell prostate carcinoma","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency; University of British Columbia","funders":"Terry Fox Research Institute; Prostate Cancer Canada; Prostate Cancer Foundation","keywords":"Biology; Cancer research; Prostate cancer; PTEN; Malignancy; MSH2; Cancer; DNA repair; Gene; DNA mismatch repair; Genetics; Apoptosis; PI3K/AKT/mTOR pathway","score_opus":0.0228984618303642,"score_gpt":0.28871867406246404,"score_spread":0.26582021223209984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884919548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99873036,0.00052650995,0.00023636752,0.000016739776,0.0000023009652,0.000009394776,0.00015129193,0.000010676178,0.00031640392],"genre_scores_gemma":[0.99945706,0.0001765278,0.00014061022,0.000013712768,0.000003693974,0.0000023637015,0.00014680896,0.0000035352712,0.00005573106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99984646,0.000014122613,0.000022223117,0.000053082396,0.000039346116,0.000024820542],"domain_scores_gemma":[0.999645,0.00006416962,0.00017471613,0.000031303287,0.00002769472,0.000057181624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012765969,0.00017965179,0.00023418495,0.0007071192,0.00024914104,0.0004783791,0.00021138391,0.00025407836,0.00065475865],"category_scores_gemma":[0.00050655263,0.00017802347,0.00018565613,0.00063809525,0.00027030127,0.0001703886,0.00025185032,0.000213921,0.0001763556],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047354473,0.00005351775,0.84738994,0.00018000937,0.000116439565,0.02806935,0.00036799317,0.00037420087,0.107933775,0.00017196446,0.00029157958,0.014577637],"study_design_scores_gemma":[0.000017105363,0.00017806902,0.881721,0.00001841333,0.000095330026,0.099625416,0.00021179803,0.00066169695,0.015446669,0.00011443891,0.0018953867,0.000014633867],"about_ca_topic_score_codex":0.0009829215,"about_ca_topic_score_gemma":0.0016601164,"teacher_disagreement_score":0.0009829215,"about_ca_system_score_codex":0.00020465886,"about_ca_system_score_gemma":0.00017033191,"threshold_uncertainty_score":0.0021903515},"labels":[],"label_agreement":null},{"id":"W2884985934","doi":"10.1002/path.5136","title":"Distinct developmental trajectories of endometriotic epithelium and stroma: implications for the origins of endometriosis","year":2018,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Endometriosis Research and Treatment","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; Canadian Centre for Applied Research in Cancer Control; University of British Columbia; BC Cancer Agency","funders":"","keywords":"Endometriosis; Stroma; Stromal cell; Epithelium; Pathogenesis; Biology; Pathology; Somatic cell; Pathological; Germline mutation; Mutation; Cancer research; Medicine; Genetics; Gene; Immunohistochemistry","score_opus":0.046875848468127146,"score_gpt":0.3296752382814155,"score_spread":0.28279938981328834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884985934","genre_codex":"commentary","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.061512258,0.06002563,0.0021749656,0.84166634,0.012351621,0.00005700454,0.000088397355,0.000094265284,0.022029422],"genre_scores_gemma":[0.56634027,0.055865113,0.003797747,0.24820322,0.113618515,0.00011858015,0.00010920543,0.000040580948,0.011906721],"study_design_codex":"case_report","study_design_gemma":"not_applicable","domain_scores_codex":[0.99938273,0.00024700112,0.00007778635,0.0000964656,0.0001162732,0.00007970341],"domain_scores_gemma":[0.9980463,0.0012252744,0.00025231368,0.00010233016,0.00021329612,0.00016041384],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008859269,0.000329477,0.00046704596,0.00052830915,0.0008731971,0.0009856104,0.00069714524,0.009309652,0.0025270525],"category_scores_gemma":[0.006493466,0.00024627135,0.0003498496,0.00038909016,0.0021675671,0.0019597048,0.0006866032,0.005335861,0.0010879465],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008885478,0.00024666812,0.0493957,0.0007408079,0.000047318896,0.51484245,0.0034528214,0.0008798726,0.010467631,0.054738,0.2099938,0.15430643],"study_design_scores_gemma":[0.00024210085,0.00032636162,0.015378287,0.00080212904,0.000046306246,0.61770976,0.0024317952,0.0020651598,0.0018184615,0.04617128,0.31289834,0.000110023335],"about_ca_topic_score_codex":0.00044952516,"about_ca_topic_score_gemma":0.00057325914,"teacher_disagreement_score":0.009309652,"about_ca_system_score_codex":0.0012737978,"about_ca_system_score_gemma":0.00056583656,"threshold_uncertainty_score":0.009242058},"labels":[],"label_agreement":null},{"id":"W2885201462","doi":"10.1002/path.5155","title":"Epithelial‐to‐mesenchymal transition signature assessment in colorectal cancer quantifies tumour stromal content rather than true transition","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Colorectal Cancer Screening and Detection","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Public Health Agency; Medical Research Council Canada; Cancer Research UK","keywords":"Epithelial–mesenchymal transition; Stromal cell; Subtyping; Transition (genetics); In silico; Mesenchymal stem cell; Biology; Cancer research; Pathology; Pathological; Cancer; Colorectal cancer; microRNA; Oncology; Medicine; Cell biology; Gene; Genetics; Computer science","score_opus":0.029707643916091465,"score_gpt":0.312839680465126,"score_spread":0.2831320365490345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885201462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99312496,0.0008551026,0.004591871,0.00005541395,0.000010073015,0.000021314123,0.0002633227,0.00009260207,0.000985399],"genre_scores_gemma":[0.99594754,0.00024003486,0.0033130816,0.000019299294,0.00000396285,0.000008482935,0.0001940883,0.0000102854,0.0002632971],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99961674,0.00012827278,0.000032332133,0.00006224282,0.00011777856,0.00004269055],"domain_scores_gemma":[0.99926645,0.00024472698,0.00024304562,0.00004585134,0.00009772341,0.00010225642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059161446,0.00020189426,0.00031275235,0.0016845273,0.00017717626,0.00062713365,0.00011801425,0.00028835065,0.0010792392],"category_scores_gemma":[0.0013607932,0.00017264925,0.0001742593,0.00087047275,0.0002710644,0.0002310086,0.00033969522,0.00029879168,0.00032780142],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013594487,0.00008120855,0.33533376,0.00044070947,0.00015174925,0.00044105027,0.00024048923,0.0016557107,0.6200233,0.00026055935,0.0003141037,0.039697833],"study_design_scores_gemma":[0.000012957474,0.00077728025,0.8521731,0.000031612086,0.00016218181,0.00294534,0.0003195423,0.009432389,0.13192251,0.00035373634,0.0018432247,0.000026117965],"about_ca_topic_score_codex":0.0006349019,"about_ca_topic_score_gemma":0.0017883903,"teacher_disagreement_score":0.0016845273,"about_ca_system_score_codex":0.00019657848,"about_ca_system_score_gemma":0.00018757032,"threshold_uncertainty_score":0.0036103725},"labels":[],"label_agreement":null},{"id":"W2885789567","doi":"10.1002/path.5146","title":"Multilevel heterogeneity of mitochondrial respiratory chain deficiency","year":2018,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Medical Research Council Canada; Wellcome Trust","keywords":"Mitochondrial DNA; Cytochrome c oxidase; Mitochondrion; Respiratory chain; Mitochondrial disease; Mitochondrial respiratory chain; Biology; Genetics; Gene","score_opus":0.030602842238082528,"score_gpt":0.27851683034668834,"score_spread":0.24791398810860582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885789567","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.30539748,0.054093808,0.010965494,0.5061383,0.0136963455,0.0002321366,0.0005862357,0.00084340887,0.108046725],"genre_scores_gemma":[0.8907754,0.010909318,0.0025156806,0.06678984,0.019522587,0.00006477456,0.00015095911,0.00007775283,0.009193683],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9995807,0.00011279043,0.000034533972,0.000100022415,0.00009029285,0.00008164992],"domain_scores_gemma":[0.9987419,0.0006963626,0.00017275548,0.000120395205,0.00013690528,0.00013162386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037163318,0.00034455824,0.00055971625,0.0004600129,0.0006741909,0.00079111446,0.00044091383,0.004159486,0.002644369],"category_scores_gemma":[0.0035698644,0.00016682083,0.00030089795,0.0003173036,0.0009608769,0.00085351855,0.0007863269,0.0032265102,0.0013543371],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002992392,0.00004238302,0.011389518,0.00044811846,0.000043836295,0.80709004,0.00069567474,0.0002915751,0.011481901,0.02075967,0.09768564,0.04977246],"study_design_scores_gemma":[0.000083751474,0.00009155407,0.0076806573,0.00025958894,0.000050897972,0.8614847,0.0003209458,0.00088020205,0.002126944,0.015757723,0.11122513,0.00003778991],"about_ca_topic_score_codex":0.00036686033,"about_ca_topic_score_gemma":0.00071113073,"teacher_disagreement_score":0.004159486,"about_ca_system_score_codex":0.0009626288,"about_ca_system_score_gemma":0.00023706297,"threshold_uncertainty_score":0.008846283},"labels":[],"label_agreement":null},{"id":"W2888406730","doi":"10.1002/path.5158","title":"Vangl2, a planar cell polarity molecule, is implicated in irreversible and reversible kidney glomerular injury","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Wnt/β-catenin signaling in development and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Manchester Biomedical Research Centre; Medical Research Council Canada; Centers for Disease Control and Prevention; British Heart Foundation; University College London; Great Ormond Street Hospital for Children; King's College London; Kids Kidney Research; NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research; Kidney Research UK; National Institute for Health and Care Research; Wellcome Trust","keywords":"Nephritis; Kidney; Nephrotoxicity; Glomerulus; Context (archaeology); MMP9; Biology; Cell biology; Pathology; Medicine; Gene; Endocrinology; Genetics; Downregulation and upregulation","score_opus":0.00848573339045418,"score_gpt":0.24646937640154928,"score_spread":0.2379836430110951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888406730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9545444,0.030509582,0.0077153468,0.0007280863,0.00011669962,0.000047286812,0.001235331,0.0003461815,0.0047569945],"genre_scores_gemma":[0.989947,0.0045319395,0.0014502199,0.00014326321,0.000027509079,0.00001883381,0.0008479238,0.000026078178,0.0030072879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997559,0.000032167893,0.000012298442,0.00007096107,0.00007269196,0.000055928405],"domain_scores_gemma":[0.99984515,0.00001178144,0.000074366966,0.000008933091,0.00001986366,0.00003985241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018452786,0.0004807202,0.00030000595,0.0006440117,0.00026749147,0.00059441844,0.00018695182,0.00044284723,0.0011447509],"category_scores_gemma":[0.00020585544,0.00015755686,0.0002423816,0.00040641034,0.00044921777,0.00024805666,0.00043427103,0.000499716,0.0002760863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034559125,0.000022459073,0.007071231,0.00019723887,0.00004807861,0.00094402744,0.00005268059,0.000177855,0.9783021,0.00095871807,0.0004936089,0.011386456],"study_design_scores_gemma":[0.000061301376,0.0005235592,0.15732758,0.000096937336,0.00019567524,0.011940662,0.00034916433,0.0023870803,0.782115,0.0030238426,0.041920085,0.00005913145],"about_ca_topic_score_codex":0.001013926,"about_ca_topic_score_gemma":0.0010276913,"teacher_disagreement_score":0.0011447509,"about_ca_system_score_codex":0.00041015,"about_ca_system_score_gemma":0.00029444127,"threshold_uncertainty_score":0.0038295388},"labels":[],"label_agreement":null},{"id":"W2893494891","doi":"10.1002/path.5171","title":"The Iroquois homeobox proteins IRX3 and IRX5 have distinct roles in Wilms tumour development and human nephrogenesis","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Barncancerfonden; Lunds Universitet; Crafoordska Stiftelsen; Cancerfonden","keywords":"Homeobox; Biology; Wnt signaling pathway; Cancer research; Cell biology; Internal medicine; Gene; Genetics; Gene expression; Signal transduction; Medicine","score_opus":0.007109610845790625,"score_gpt":0.2372337000880428,"score_spread":0.23012408924225217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2893494891","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849429,0.009610381,0.0026269688,0.00007910087,0.000016225855,0.00001083487,0.00023437328,0.000047020432,0.0024320884],"genre_scores_gemma":[0.9955297,0.001485344,0.0009066483,0.00002476878,0.0000048269403,0.000004764644,0.00025633464,0.0000067875326,0.0017807937],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992704,0.000010305856,0.0000049319374,0.000015421663,0.000023214976,0.000019133324],"domain_scores_gemma":[0.99993384,0.000008190159,0.000027222246,0.0000040821396,0.000005397363,0.000021370452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014935128,0.00017307284,0.0001425419,0.00023391268,0.0001341877,0.00030512747,0.0001079436,0.00024277087,0.0013460879],"category_scores_gemma":[0.00009615108,0.00007555127,0.00020138726,0.00012859139,0.000247671,0.00017500027,0.00025502563,0.00020347838,0.0002408598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022293367,0.000009771212,0.0054369303,0.00008316405,0.0000127731555,0.00032950225,0.000059798076,0.00008595334,0.9880348,0.0006246119,0.000059221016,0.0050406223],"study_design_scores_gemma":[0.000020965783,0.00037580007,0.23569117,0.000034405843,0.00006138045,0.0053030793,0.0002639851,0.000784243,0.74196315,0.00045164616,0.015029656,0.000020472553],"about_ca_topic_score_codex":0.00075626856,"about_ca_topic_score_gemma":0.0008559561,"teacher_disagreement_score":0.0013460879,"about_ca_system_score_codex":0.00019372175,"about_ca_system_score_gemma":0.00016662305,"threshold_uncertainty_score":0.0045030713},"labels":[],"label_agreement":null},{"id":"W2896293787","doi":"10.1002/path.5182","title":"NFIB promotes cell survival by directly suppressing p21 transcription in <i>TP53</i>‐mutated triple‐negative breast cancer","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer-related Molecular Pathways","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; School of Medicine, New York University","keywords":"Cancer research; Triple-negative breast cancer; Gene knockdown; Oncogene; Cancer; Breast cancer; Biology; Cell cycle; Medicine; Oncology; Internal medicine; Cell culture; Genetics","score_opus":0.01358241685988515,"score_gpt":0.2725000809083724,"score_spread":0.25891766404848726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2896293787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99403507,0.0026366045,0.0009534943,0.00008164381,0.00002325129,0.000010246968,0.00025606697,0.000079284255,0.0019244645],"genre_scores_gemma":[0.99684554,0.00089309143,0.00039961925,0.000024055289,0.0000060396924,0.000011052433,0.00035041853,0.00000963731,0.0014604499],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999517,0.000005231128,0.000004056738,0.000008407184,0.000014037674,0.000016525395],"domain_scores_gemma":[0.99996376,0.0000053005174,0.000008782128,0.000003622635,0.000004628121,0.00001386874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059170838,0.00020289427,0.00017715801,0.0001332415,0.0001436078,0.00021802721,0.00009109814,0.00011091811,0.0010247519],"category_scores_gemma":[0.00006742262,0.00007363718,0.00013572615,0.000101760364,0.00011723876,0.00010803184,0.000085741405,0.00025731465,0.00030186796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007524497,0.000016971071,0.00026061374,0.000027127095,0.0000026550817,0.00003450332,0.000009321988,0.000022421737,0.998242,0.000030683143,0.000053248346,0.0012252902],"study_design_scores_gemma":[0.000019644902,0.0003307412,0.012577649,0.000007491275,0.000017558648,0.00051920104,0.000039190432,0.0006695938,0.9809124,0.00004514901,0.0048582046,0.0000031128313],"about_ca_topic_score_codex":0.0012838641,"about_ca_topic_score_gemma":0.0020119452,"teacher_disagreement_score":0.0012838641,"about_ca_system_score_codex":0.00023162016,"about_ca_system_score_gemma":0.00015431127,"threshold_uncertainty_score":0.0034281611},"labels":[],"label_agreement":null},{"id":"W2898765161","doi":"10.1002/path.5177","title":"The tyrosine phosphatase Shp‐2 confers resistance to colonic inflammation by driving goblet cell function and crypt regeneration","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Protein Tyrosine Phosphatases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; McGill University; Université de Sherbrooke; University of Texas Southwestern Medical Center","keywords":"Colitis; Goblet cell; Protein tyrosine phosphatase; Crypt; Cancer research; Biology; Cell growth; MAPK/ERK pathway; Signal transduction; Cell biology; Immunology; Epithelium; Endocrinology; Biochemistry","score_opus":0.004958731326298443,"score_gpt":0.22228925626399904,"score_spread":0.21733052493770058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898765161","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997493,0.00029873475,0.0013013432,0.000064108535,0.00001746458,0.000018684692,0.00016254694,0.00007774722,0.0005663818],"genre_scores_gemma":[0.99647313,0.00022936643,0.0009924058,0.00003353467,0.0000088919915,0.00002709437,0.00027464662,0.000015834903,0.0019450962],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998468,0.00002497908,0.000015640337,0.000023810122,0.00003982892,0.000048929705],"domain_scores_gemma":[0.9998375,0.000020233367,0.000046395366,0.000023256613,0.000007630392,0.00006502499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013126903,0.00045379178,0.00018734975,0.00026396816,0.0001051295,0.00025044713,0.00018016402,0.00037920376,0.0014922284],"category_scores_gemma":[0.00009266072,0.00018715908,0.00026498284,0.00011953883,0.00026863057,0.00018600625,0.00026024051,0.0008585029,0.00031164216],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069941016,0.000026764956,0.00008202934,0.000009146982,0.0000023180519,0.000023358103,0.0000030755652,0.000030031782,0.99947804,0.000036826077,0.000011912542,0.00022666727],"study_design_scores_gemma":[0.00004292598,0.0007738421,0.0036009126,0.0000041382596,0.000013893257,0.00024622277,0.000021817094,0.0012272121,0.99289376,0.000042990177,0.0011281472,0.0000041919707],"about_ca_topic_score_codex":0.00028606807,"about_ca_topic_score_gemma":0.00045697056,"teacher_disagreement_score":0.0014922284,"about_ca_system_score_codex":0.00019127475,"about_ca_system_score_gemma":0.00012761077,"threshold_uncertainty_score":0.004992008},"labels":[],"label_agreement":null},{"id":"W2898998692","doi":"10.1002/path.5190","title":"Does prenylation predict progression in NAFLD?","year":2018,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Liver Disease Diagnosis and Treatment","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre in Green Chemistry and Catalysis; Institute of Infection and Immunity; University of Ottawa","funders":"Canadian Institutes of Health Research; Canadian Liver Foundation","keywords":"Prenylation; Steatohepatitis; AMPK; Fatty liver; Biology; Steatosis; Protein kinase A; Biochemistry; Kinase; Medicine; Endocrinology; Disease; Internal medicine; Enzyme","score_opus":0.01462522956943274,"score_gpt":0.2997972002684963,"score_spread":0.2851719706990636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898998692","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94904494,0.032382995,0.002576092,0.0033413593,0.00057525595,0.000083316816,0.0021338272,0.00012258792,0.0097395675],"genre_scores_gemma":[0.99396366,0.0025417416,0.0008248786,0.00027298424,0.0002335891,0.000020484853,0.00095992035,0.000017072827,0.0011657395],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99942446,0.00018233189,0.000093266804,0.00016849602,0.0000715652,0.000059868056],"domain_scores_gemma":[0.9968951,0.0007949224,0.0010428074,0.00034202298,0.00045077808,0.00047441348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024091066,0.000478737,0.00078596245,0.0009980919,0.00038476533,0.0013214105,0.0005372969,0.0016503314,0.004855705],"category_scores_gemma":[0.005527807,0.00029294885,0.0008808979,0.0011717946,0.00065483485,0.0020349226,0.0008110301,0.0014683687,0.0013748319],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013724578,0.000046849662,0.98366886,0.00014827208,0.00024982923,0.00015066897,0.00009234668,0.00013238679,0.00056863064,0.00023788227,0.00061836746,0.012713398],"study_design_scores_gemma":[0.000043275315,0.0006131082,0.98370695,0.0002662249,0.000535191,0.002006958,0.00060672796,0.0022564123,0.00057118817,0.003510205,0.0058334777,0.000050342107],"about_ca_topic_score_codex":0.0009991975,"about_ca_topic_score_gemma":0.0019189699,"teacher_disagreement_score":0.004855705,"about_ca_system_score_codex":0.00024338317,"about_ca_system_score_gemma":0.00030253464,"threshold_uncertainty_score":0.016243935},"labels":[],"label_agreement":null},{"id":"W2904338396","doi":"10.1002/path.5201","title":"shRNA‐mediated PPARα knockdown in human glioma stem cells reduces <i>in vitro</i> proliferation and inhibits orthotopic xenograft tumour growth","year":2018,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Glioma Diagnosis and Treatment","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Directorate for Biological Sciences; Medical Research Council Canada; North Bristol NHS Trust; Biotechnology and Biological Sciences Research Council; Brain Tumour Charity; Pathological Society of Great Britain and Ireland; Jean Shanks Foundation; National Institute for Health and Care Research; Cancer Research UK","keywords":"Biology; Cancer research; Gene knockdown; Peroxisome proliferator-activated receptor; Small hairpin RNA; Stem cell; Downregulation and upregulation; Glioma; SOX2; Clonogenic assay; Transcription factor; Cell biology; Cell culture; Cell; Receptor; Biochemistry","score_opus":0.014648915818939352,"score_gpt":0.262316459879358,"score_spread":0.24766754406041863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2904338396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98686767,0.0019038275,0.003920446,0.00022931224,0.00010933872,0.0000715043,0.0026245422,0.0005059044,0.0037676003],"genre_scores_gemma":[0.98226124,0.0019869744,0.0027695273,0.00013271195,0.000018819615,0.00011392439,0.004386674,0.000072079,0.0082579935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987364,0.00001226019,0.00001586081,0.000024207831,0.00004099506,0.000032997996],"domain_scores_gemma":[0.9999461,0.000006004901,0.000016384776,0.000008243389,0.000007081457,0.000016266076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013878083,0.00030243665,0.0003519217,0.00026062044,0.00014122188,0.00027213828,0.00019843796,0.00019704424,0.0014253232],"category_scores_gemma":[0.00005251378,0.00014380596,0.00029886147,0.00024616806,0.00020758281,0.00012416934,0.00010679384,0.00061021995,0.0005114424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001183829,0.00007421394,0.00014980751,0.00005661956,0.000010827984,0.00002698538,0.00002397574,0.000116703035,0.99680626,0.000115340656,0.00031409884,0.0021867908],"study_design_scores_gemma":[0.0000258043,0.00050305366,0.002484142,0.0000068717914,0.000028685185,0.00011633166,0.000027511713,0.00089506165,0.99070764,0.00003425926,0.0051667234,0.000003954003],"about_ca_topic_score_codex":0.0020667177,"about_ca_topic_score_gemma":0.0026721838,"teacher_disagreement_score":0.0020667177,"about_ca_system_score_codex":0.00031834233,"about_ca_system_score_gemma":0.0003271951,"threshold_uncertainty_score":0.004768193},"labels":[],"label_agreement":null},{"id":"W2905641122","doi":"10.1002/path.5221","title":"Neutrophils in the initiation and resolution of acute pulmonary inflammation: understanding biological function and therapeutic potential","year":2018,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":245,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Engineering and Physical Sciences Research Council; Pathological Society of Great Britain and Ireland; Medical Research Council Canada; Wellcome Trust","keywords":"ARDS; Inflammation; Immunology; Neutrophil extracellular traps; Context (archaeology); Medicine; Acute respiratory distress; Inflammatory response; Proinflammatory cytokine; Lung; Intensive care medicine; Biology; Internal medicine","score_opus":0.08485968388170405,"score_gpt":0.29725678702553393,"score_spread":0.21239710314382987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2905641122","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000081630336,0.99887305,0.000085239946,0.0003137877,0.0002449472,0.000002860802,0.000006500592,0.0000035498629,0.00038837027],"genre_scores_gemma":[0.000508675,0.9987244,0.00011645897,0.0001337129,0.00021376189,0.0000055859427,0.000012764141,8.310479e-7,0.00028376243],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99979836,0.000035412384,0.000032423854,0.00003418354,0.00007615165,0.000023524786],"domain_scores_gemma":[0.9997062,0.000115998126,0.000039905928,0.000009650782,0.00008640693,0.000041848223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076874957,0.00086939015,0.0011704196,0.001881807,0.00032499895,0.0010379382,0.0009694009,0.0015383353,0.0021101295],"category_scores_gemma":[0.0008078822,0.00024721096,0.00030665824,0.0013873226,0.00077029056,0.0019267072,0.00096311275,0.0022691446,0.0016068567],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011924145,0.000069893424,0.0001732917,0.012553695,0.00004595707,0.00024136525,0.00011274006,0.0003076,0.0024517977,0.006138931,0.026081886,0.9517036],"study_design_scores_gemma":[0.000016751583,0.00015869937,0.00070027093,0.0031837283,0.000052883024,0.0015611609,0.000100578356,0.00007787762,0.00053202035,0.0026864414,0.9909122,0.00001748835],"about_ca_topic_score_codex":0.0005143976,"about_ca_topic_score_gemma":0.0009079795,"teacher_disagreement_score":0.0021101295,"about_ca_system_score_codex":0.0005809754,"about_ca_system_score_gemma":0.001038969,"threshold_uncertainty_score":0.0070590377},"labels":[],"label_agreement":null},{"id":"W2908453839","doi":"10.1002/path.5230","title":"Molecular profiling in muscle‐invasive bladder cancer: more than the sum of its parts","year":2019,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Bladder and Urothelial Cancer Treatments","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; Queen's University","funders":"Geochemical Society; Cancer Research Society","keywords":"Subtyping; Bladder cancer; Profiling (computer programming); Transcriptome; Gene expression profiling; Bioinformatics; Biology; Medicine; Oncology; Internal medicine; Cancer; Gene expression; Computer science; Gene","score_opus":0.06350403810990926,"score_gpt":0.3676798625173298,"score_spread":0.3041758244074205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2908453839","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07647739,0.79691887,0.083876796,0.025200782,0.0018404763,0.000203883,0.0013144652,0.00076014636,0.013407143],"genre_scores_gemma":[0.31767803,0.5548601,0.10262781,0.011022483,0.0027638637,0.00019653006,0.0012760927,0.0002747224,0.009300428],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990157,0.00040941473,0.000107961445,0.00013188338,0.00027390456,0.0000610792],"domain_scores_gemma":[0.99879456,0.0005715219,0.00021829097,0.0000918917,0.00025425135,0.000069607224],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026993118,0.00042923732,0.00087311893,0.0021674929,0.00035266296,0.0022225757,0.00055053947,0.00085914327,0.001149438],"category_scores_gemma":[0.0021855554,0.00024144264,0.00057311193,0.0016811322,0.0010624167,0.0015072913,0.0010388853,0.0012624394,0.0008588372],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032678348,0.00006523402,0.045827985,0.005729885,0.00034015672,0.0030716828,0.0011447928,0.00094796024,0.13031359,0.009599788,0.017661031,0.7849711],"study_design_scores_gemma":[0.000038781214,0.0010836945,0.18071698,0.006243289,0.00091768964,0.046154942,0.0034722968,0.004395804,0.08187095,0.029111458,0.64573544,0.0002586772],"about_ca_topic_score_codex":0.0007510064,"about_ca_topic_score_gemma":0.0017813221,"teacher_disagreement_score":0.0026993118,"about_ca_system_score_codex":0.00057971367,"about_ca_system_score_gemma":0.0006488189,"threshold_uncertainty_score":0.014275491},"labels":[],"label_agreement":null},{"id":"W2909575449","doi":"10.1002/path.5232","title":"The immunological consequences of radiation‐induced DNA damage","year":2019,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Cancer Research; Cancer Research UK; National Institute for Health and Care Research; NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research; Royal Marsden NHS Foundation Trust","keywords":"Immune system; DNA damage; Cancer research; Biology; Stromal cell; Genome instability; Stimulator of interferon genes; Abscopal effect; Context (archaeology); Radiation therapy; Tumor microenvironment; DNA repair; Immunosuppression; Interferon; Immunology; Programmed cell death; Immunotherapy; Innate immune system; Apoptosis; Medicine; DNA; Genetics","score_opus":0.06573877676198982,"score_gpt":0.33929898044064927,"score_spread":0.27356020367865946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909575449","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.701823,0.26173484,0.0091375355,0.002008714,0.00088296895,0.00014940384,0.0005267375,0.00017822205,0.023558654],"genre_scores_gemma":[0.95348877,0.038285468,0.0012679243,0.0007379082,0.0003450418,0.000062720275,0.00037631052,0.000024361503,0.005411515],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99955934,0.00015940511,0.000029262561,0.00005360566,0.00012294376,0.00007532817],"domain_scores_gemma":[0.99971,0.00006916577,0.00008104718,0.000033994085,0.00005824475,0.00004753118],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078725547,0.00027260857,0.000249061,0.00052627514,0.00017773463,0.00042020812,0.00023778374,0.00050457177,0.0028350896],"category_scores_gemma":[0.00055899785,0.0001189496,0.0002530707,0.0001907024,0.00037090882,0.00030074993,0.00035635434,0.00065787026,0.0007803333],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062865997,0.00015989275,0.0043022158,0.0014066859,0.00008519086,0.0008146209,0.000189079,0.00058691285,0.91696364,0.0035987897,0.0014787965,0.06978555],"study_design_scores_gemma":[0.0001810495,0.008935828,0.11688136,0.0007730582,0.00034860717,0.02088254,0.001034935,0.0016284528,0.6516273,0.008447307,0.18918903,0.00007049843],"about_ca_topic_score_codex":0.00010122043,"about_ca_topic_score_gemma":0.000108083565,"teacher_disagreement_score":0.0028350896,"about_ca_system_score_codex":0.00031461517,"about_ca_system_score_gemma":0.00015016294,"threshold_uncertainty_score":0.009484351},"labels":[],"label_agreement":null},{"id":"W2912765323","doi":"10.1002/path.5241","title":"The innate immune architecture of lung tumors and its implication in disease progression","year":2019,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill Genome Centre; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Pfizer Canada; Susan G. Komen; Merck Canada; McGill University; McGill University Health Centre; AstraZeneca Canada; Cancer Research Society; Canada Research Chairs; AstraZeneca; McMaster University; Pfizer","keywords":"Context (archaeology); Immune system; Lung cancer; Immunology; Lung; Innate immune system; Homeostasis; Disease; Medicine; Cancer; Malignancy; Biology; Pathology; Internal medicine","score_opus":0.018026176900467393,"score_gpt":0.3282709549927402,"score_spread":0.31024477809227285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2912765323","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00013843887,0.9985483,0.00011302748,0.00028499344,0.00019407638,0.000002474057,0.000009812681,0.0000057221255,0.0007031392],"genre_scores_gemma":[0.0010035589,0.99790823,0.000109000226,0.00012829361,0.00021900078,0.0000045716647,0.000019737872,0.0000011185816,0.00060649606],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99983525,0.00002747845,0.000022571816,0.000027541286,0.00006334964,0.000023778395],"domain_scores_gemma":[0.9997917,0.00007610351,0.000032193755,0.000007837987,0.000057466164,0.000034822664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050251366,0.0005995704,0.0010676632,0.0018258909,0.0002707537,0.0010337476,0.0006511705,0.001179565,0.0024802655],"category_scores_gemma":[0.00043266572,0.00018915314,0.0002980215,0.0012625873,0.0007394059,0.0010614035,0.00075778674,0.0016240885,0.0020592834],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008193649,0.000040738472,0.00033329538,0.011441668,0.000039771243,0.00038134778,0.000110014225,0.00038881323,0.0047588036,0.007313193,0.026031554,0.94907886],"study_design_scores_gemma":[0.0000075789285,0.00009193653,0.0017182879,0.002766637,0.000040998075,0.002680445,0.00009214826,0.00008074343,0.00088270096,0.0032603533,0.98836154,0.000016628348],"about_ca_topic_score_codex":0.0005512604,"about_ca_topic_score_gemma":0.0007497582,"teacher_disagreement_score":0.0024802655,"about_ca_system_score_codex":0.00070424925,"about_ca_system_score_gemma":0.0008736935,"threshold_uncertainty_score":0.008297324},"labels":[],"label_agreement":null},{"id":"W2913719755","doi":"10.1002/path.5245","title":"TBX3 promotes progression of pre‐invasive breast cancer cells by inducing EMT and directly up‐regulating SLUG","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; London Health Sciences Centre; Western University","funders":"Canadian Institutes of Health Research; Government of Ontario; Breast Cancer Society of Canada; Ontario Institute for Cancer Research","keywords":"Slug; Cancer; Breast cancer; Cancer research; Medicine; Internal medicine","score_opus":0.008424641041776336,"score_gpt":0.2942573120765521,"score_spread":0.2858326710347758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913719755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99631906,0.0010841991,0.000936313,0.00008421012,0.000018614635,0.000018628843,0.00036649796,0.000108199834,0.0010643097],"genre_scores_gemma":[0.99652356,0.0005958704,0.0006401835,0.000041404426,0.0000067314254,0.000023316614,0.000476951,0.000015610367,0.0016762757],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999399,0.000010268533,0.0000053915724,0.0000072471594,0.000015025932,0.000022119912],"domain_scores_gemma":[0.9999502,0.0000072653925,0.000011146607,0.0000048821653,0.000005549074,0.000020873198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008919254,0.0002682078,0.00018522787,0.00018557224,0.00017611716,0.00022804395,0.00007290584,0.00011978861,0.0013254187],"category_scores_gemma":[0.00006539669,0.00010151853,0.00025413145,0.00014258608,0.00015454569,0.000080845355,0.00015973789,0.00044151087,0.00027270112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019922105,0.000036134505,0.0005169251,0.00002702597,0.0000042874076,0.000030694082,0.00001510459,0.000040856088,0.9981828,0.000037352005,0.000059325528,0.0008502882],"study_design_scores_gemma":[0.000039785624,0.00047327706,0.033397503,0.000006383975,0.000016048958,0.00019329047,0.00006177475,0.0010612793,0.96218127,0.00006787166,0.002496923,0.0000045719685],"about_ca_topic_score_codex":0.0013750598,"about_ca_topic_score_gemma":0.0024578518,"teacher_disagreement_score":0.0013750598,"about_ca_system_score_codex":0.00023589212,"about_ca_system_score_gemma":0.00025215547,"threshold_uncertainty_score":0.0044339895},"labels":[],"label_agreement":null},{"id":"W2942900286","doi":"10.1002/path.5285","title":"Serotonin synthesis protects the mouse colonic crypt from DNA damage and colorectal tumorigenesis","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Aberrant crypt foci; DNA damage; Carcinogenesis; Biology; DNA repair; Cancer research; Carcinogen; Colitis; Molecular biology; Colorectal cancer; Immunology; DNA; Cancer; Biochemistry; Genetics","score_opus":0.010740522733386448,"score_gpt":0.24117982352586584,"score_spread":0.2304393007924794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2942900286","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99429953,0.0018109212,0.0018728955,0.00012933722,0.000033910503,0.00003933166,0.000800249,0.00018830951,0.0008254993],"genre_scores_gemma":[0.9909418,0.0010242775,0.0020646034,0.00010055776,0.000014401109,0.00006434328,0.000881268,0.00004317139,0.004865467],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99984074,0.000025432199,0.000019052723,0.00003947767,0.00003280332,0.00004252261],"domain_scores_gemma":[0.99965715,0.000031495223,0.00012183059,0.000044279797,0.000027414042,0.00011791729],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013461204,0.00046056832,0.0003262883,0.0007038899,0.00014533805,0.0002377828,0.00020252512,0.00053325377,0.0021326412],"category_scores_gemma":[0.00010040351,0.0002851121,0.0003368717,0.00015863653,0.00022682374,0.0001832002,0.00017470984,0.0008089399,0.00038328647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025474615,0.00003762056,0.00015173481,0.00002520417,0.0000061122487,0.000027145956,0.000006358322,0.000026268168,0.9988733,0.00002097297,0.000014537432,0.0005561006],"study_design_scores_gemma":[0.00004378938,0.001474132,0.007030977,0.000014804739,0.000023014198,0.0001810383,0.0000313393,0.00044598005,0.9898517,0.000036067322,0.0008616661,0.0000054949833],"about_ca_topic_score_codex":0.0010896252,"about_ca_topic_score_gemma":0.0015978812,"teacher_disagreement_score":0.0021326412,"about_ca_system_score_codex":0.00025496414,"about_ca_system_score_gemma":0.00019858521,"threshold_uncertainty_score":0.0071344376},"labels":[],"label_agreement":null},{"id":"W2942980993","doi":"10.1002/path.5286","title":"Four‐jointed knock‐out delays renal failure in an ADPKD model with kidney injury","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic and Kidney Cyst Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"Research Executive Agency; Nierstichting; European Commission","keywords":"PKD1; Cyst; Autosomal dominant polycystic kidney disease; Kidney; Fibrosis; Kidney disease; Pathology; Nephrotoxicity; Polycystic kidney disease; Inflammation; Medicine; Acute kidney injury; Internal medicine; Biology; Endocrinology","score_opus":0.009173404697898678,"score_gpt":0.24127782009483736,"score_spread":0.23210441539693868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2942980993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9884062,0.0015626026,0.005955022,0.00039846177,0.00018051396,0.00009678678,0.0012038156,0.00037282635,0.0018238681],"genre_scores_gemma":[0.9852271,0.0013019141,0.0040758993,0.00016291057,0.000036162368,0.00018862303,0.0011573934,0.000079788086,0.0077703046],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960524,0.0000590019,0.00006506675,0.000094276045,0.00010014199,0.000076385666],"domain_scores_gemma":[0.99961215,0.000038086982,0.00012716526,0.000038199203,0.000026064128,0.00015836315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040576793,0.0006914203,0.00085114577,0.0006413904,0.00034562667,0.0005280534,0.00046724296,0.00090006704,0.0021400312],"category_scores_gemma":[0.0001980582,0.0003252358,0.00052620115,0.00024970775,0.00059224886,0.00056354987,0.00035995618,0.0013825782,0.0006008956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009799242,0.00037525146,0.00044487478,0.0001149747,0.000024572431,0.000336438,0.000051313757,0.00019195509,0.99496067,0.00030602195,0.00018895695,0.0020249572],"study_design_scores_gemma":[0.00027783858,0.0032589328,0.009890026,0.000042490086,0.000106806,0.0014982143,0.00012247355,0.0037472758,0.97347283,0.00033603914,0.00720522,0.000042037456],"about_ca_topic_score_codex":0.00067848235,"about_ca_topic_score_gemma":0.0009316981,"teacher_disagreement_score":0.0021400312,"about_ca_system_score_codex":0.00036324002,"about_ca_system_score_gemma":0.00040482383,"threshold_uncertainty_score":0.0071591735},"labels":[],"label_agreement":null},{"id":"W2949413659","doi":"10.1002/path.5314","title":"Oncogenic mutations in histologically normal endometrium: the new normal?","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Endometriosis Research and Treatment","field":"Medicine","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"B.C. Women's Hospital & Health Centre; University of Calgary; Women's Health Research Institute; University of British Columbia; Vancouver General Hospital; Canadian Centre for Applied Research in Cancer Control; Calgary Laboratory Services; BC Cancer Agency","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; VGH and UBC Hospital Foundation","keywords":"PTEN; Endometrium; Somatic cell; Endometrial cancer; Endometriosis; Adenomyosis; Pathology; KRAS; Immunohistochemistry; Cancer research; Germline mutation; Medicine; Uterus; Malignant transformation; Biology; ARID1A; Mutation; Cancer; Internal medicine; Gene; Genetics; PI3K/AKT/mTOR pathway; Colorectal cancer","score_opus":0.025605454420898767,"score_gpt":0.31662101260689895,"score_spread":0.29101555818600017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949413659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9383005,0.043451402,0.008834318,0.0049026916,0.0004818728,0.000038009443,0.00029554975,0.00008696633,0.0036087076],"genre_scores_gemma":[0.9865507,0.008247534,0.0034800346,0.0006800904,0.00034874596,0.000015029266,0.00015727998,0.000024531528,0.000496076],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979588,0.0005291863,0.00033122138,0.0003083059,0.0006863655,0.00018623778],"domain_scores_gemma":[0.9965327,0.00081668637,0.0008319574,0.0008536155,0.0006351189,0.00032997457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033037895,0.0004548058,0.0007818308,0.002041991,0.00044933107,0.0017545685,0.00078395294,0.00059981644,0.0009892738],"category_scores_gemma":[0.006983685,0.00034263643,0.00032709216,0.00084814057,0.0025147495,0.0015380029,0.00109316,0.00070565875,0.0002761487],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010204308,0.000105059255,0.76253,0.0006253006,0.00021495725,0.013085102,0.00097137387,0.00031849407,0.047183976,0.0034596266,0.0016675743,0.16881816],"study_design_scores_gemma":[0.00008720261,0.0015924652,0.73034024,0.00081203674,0.0004317847,0.18085057,0.0059480374,0.0031091166,0.017844724,0.016393147,0.04247592,0.000114593306],"about_ca_topic_score_codex":0.00066466734,"about_ca_topic_score_gemma":0.0015388158,"teacher_disagreement_score":0.0033037895,"about_ca_system_score_codex":0.00040034155,"about_ca_system_score_gemma":0.00036585587,"threshold_uncertainty_score":0.017472327},"labels":[],"label_agreement":null},{"id":"W2952031509","doi":"10.1002/path.5315","title":"Development of a predictive model for stromal content in prostate cancer samples to improve signature performance","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Prostate Cancer Treatment and Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Calgary; McGill University Health Centre","funders":"Canadian Cancer Society Research Institute; Prostate Cancer Canada; Movember Foundation","keywords":"Stromal cell; Prostate cancer; Prostate; Stroma; Metastasis; Medicine; Cancer research; Pathology; PCA3; Oncology; Cancer; Immunohistochemistry; Biology; Internal medicine","score_opus":0.05463652249882536,"score_gpt":0.3294163177374782,"score_spread":0.2747797952386528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2952031509","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19405009,0.00044403583,0.80106556,0.00043291308,0.00004984736,0.00012755777,0.00081000046,0.0024125124,0.0006075513],"genre_scores_gemma":[0.86036015,0.00017739003,0.1360786,0.00020459061,0.000051731866,0.00021521527,0.0013872706,0.00015462645,0.0013704249],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9991055,0.00033853072,0.00006175441,0.0002404701,0.00014724392,0.00010652891],"domain_scores_gemma":[0.99693227,0.001997967,0.00026125612,0.0001881917,0.0005155973,0.00010476513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0041025155,0.0011326175,0.0012463981,0.0011948455,0.00040446492,0.0012594464,0.0011121501,0.0010388433,0.0010669999],"category_scores_gemma":[0.0063896677,0.0005129258,0.0012966748,0.00080210576,0.00046669834,0.0007822247,0.0009705039,0.0016688799,0.00072275475],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060107186,0.00023099338,0.021858586,0.000100252524,0.00024808926,0.00011284408,0.00007255266,0.8437056,0.018981028,0.0009043312,0.0014048486,0.11177981],"study_design_scores_gemma":[0.000004108944,0.00001845018,0.0005847705,0.0000024464362,0.000011325332,0.00000894829,0.0000026333628,0.99796426,0.0011225839,0.00019753905,0.00007777356,0.0000052200885],"about_ca_topic_score_codex":0.009878297,"about_ca_topic_score_gemma":0.0061025983,"teacher_disagreement_score":0.009878297,"about_ca_system_score_codex":0.0009283844,"about_ca_system_score_gemma":0.0017224271,"threshold_uncertainty_score":0.021696448},"labels":[],"label_agreement":null},{"id":"W2954063027","doi":"10.1002/path.5319","title":"Integrative genomic analysis of matched primary and metastatic pediatric osteosarcoma","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children; University of British Columbia; Canada's Michael Smith Genome Sciences Centre; McGill University Health Centre; Simon Fraser University; BC Cancer Agency","funders":"National Cancer Institute; Genome Canada; Canadian Institutes of Health Research; Genome British Columbia; Michael Smith Health Research BC; St. Baldrick's Foundation","keywords":"Osteosarcoma; Primary tumor; Exome sequencing; Somatic hypermutation; Genome instability; Germline; Biology; Copy-number variation; Exome; Cancer; Metastasis; Gene; Cancer research; Genome; Medicine; Mutation; Genetics; DNA; DNA damage; Antibody","score_opus":0.014747299685416902,"score_gpt":0.27576841131423974,"score_spread":0.26102111162882285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2954063027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98947304,0.0009421715,0.0036310493,0.000033728553,0.000011841011,0.000048373346,0.004165324,0.000066557586,0.0016278892],"genre_scores_gemma":[0.9751094,0.0010141808,0.0062540565,0.00007734654,0.000021058913,0.00006407003,0.01639507,0.00007597389,0.0009888299],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997534,0.000017547547,0.000013544635,0.000093278206,0.00007698443,0.000045182296],"domain_scores_gemma":[0.9998454,0.000037734608,0.000030043766,0.000019314884,0.00003820305,0.00002925168],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014744131,0.00022726385,0.00044220476,0.0010198676,0.0002701176,0.00027655522,0.00015229826,0.0001999149,0.002223809],"category_scores_gemma":[0.00053846557,0.00015544843,0.00034639178,0.0009261289,0.00019400143,0.00007784401,0.0004355938,0.0002210662,0.00038811585],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090940716,0.000099841636,0.076712444,0.00028628705,0.00019057772,0.004791487,0.00068769656,0.0010613457,0.8771373,0.00042638826,0.0006238484,0.037073307],"study_design_scores_gemma":[0.000082553386,0.0008694336,0.84476614,0.000035664936,0.00047730142,0.020964805,0.0006824042,0.0025314984,0.10845082,0.00042777616,0.02069365,0.000018016748],"about_ca_topic_score_codex":0.0016642126,"about_ca_topic_score_gemma":0.003148699,"teacher_disagreement_score":0.002223809,"about_ca_system_score_codex":0.00026977426,"about_ca_system_score_gemma":0.00027409982,"threshold_uncertainty_score":0.0074394345},"labels":[],"label_agreement":null},{"id":"W2964864823","doi":"10.1002/path.5335","title":"Overactivity or blockade of transforming growth factor‐β each generate a specific ureter malformation","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Urological Disorders and Treatments","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"H2020 Marie Skłodowska-Curie Actions; Medical Research Council; Kidney Research UK; Medical Research Council Canada; Wellcome Trust","keywords":"Transforming growth factor; Ureter; Fibroblast growth factor; Biology; Receptor; Embryonic stem cell; Cell biology; Organ culture; Morphogenesis; FGF10; Internal medicine; Growth factor; Endocrinology; Fibroblast growth factor receptor; In vitro; Medicine; Genetics; Gene","score_opus":0.030437937809213594,"score_gpt":0.27143780245663796,"score_spread":0.24099986464742437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2964864823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910581,0.0011678858,0.003926658,0.00012838605,0.00013122073,0.00008791606,0.00067276665,0.00020305692,0.0026239955],"genre_scores_gemma":[0.985388,0.001147738,0.0035518187,0.00011342977,0.000017900462,0.00011424181,0.0011281206,0.00008699584,0.008451847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996238,0.00003708465,0.000060427967,0.00008264377,0.000104723986,0.00009130766],"domain_scores_gemma":[0.9994273,0.00013865644,0.00014378113,0.000070371745,0.000016912009,0.0002029055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021612183,0.0005823536,0.00046379043,0.0005458151,0.00016572182,0.0003811347,0.00031339555,0.0005562829,0.0032261745],"category_scores_gemma":[0.0001700711,0.00036850356,0.0006766716,0.00027539648,0.00046682474,0.0002484702,0.00048641927,0.0014302009,0.00054541725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009556575,0.0000505925,0.00024607824,0.000028185083,0.000009264401,0.00017070184,0.000015489139,0.00004400909,0.9982633,0.00015965622,0.000035759454,0.0008814944],"study_design_scores_gemma":[0.000019010798,0.00046701424,0.0039880103,0.0000075710727,0.00002495676,0.0007400311,0.000034234057,0.0004966393,0.9919796,0.000064493586,0.0021736019,0.0000048406364],"about_ca_topic_score_codex":0.0002894309,"about_ca_topic_score_gemma":0.00053756294,"teacher_disagreement_score":0.0032261745,"about_ca_system_score_codex":0.00030620745,"about_ca_system_score_gemma":0.00042258142,"threshold_uncertainty_score":0.010792613},"labels":[],"label_agreement":null},{"id":"W2977507283","doi":"10.1002/path.5353","title":"Oncogenic <i>BRAF</i> and <i>KRAS</i> mutations in endosalpingiosis","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"KRAS; Serous fluid; Fallopian tube; Serous carcinoma; Pathology; Immunohistochemistry; Cancer research; Medicine; Ovarian cancer; Biology; Cancer; Internal medicine; Gynecology","score_opus":0.010880012827201989,"score_gpt":0.2664128901100983,"score_spread":0.2555328772828963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2977507283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984573,0.00033228085,0.0005857805,0.000014920438,0.000003374636,0.000006280544,0.000030652438,0.00001178675,0.0005576794],"genre_scores_gemma":[0.99964523,0.000069932976,0.00018524978,0.0000060684315,0.0000025698616,0.000001663648,0.000018804352,0.0000015746358,0.00006885422],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998729,0.000029135997,0.000014147656,0.000030307798,0.00002756997,0.000025873223],"domain_scores_gemma":[0.99965703,0.00008691624,0.00014727702,0.00002775846,0.000034556146,0.000046395482],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023740089,0.00021432237,0.00013318434,0.00059611455,0.00015340727,0.0003247484,0.00011078092,0.00021163054,0.00095648394],"category_scores_gemma":[0.00063086936,0.00016328337,0.00012157192,0.00021499042,0.00039306976,0.00017976608,0.0002875208,0.0001483829,0.00017464756],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015390337,0.000042657855,0.6988164,0.00012809024,0.000043289885,0.012701208,0.00025517345,0.00020839594,0.2739702,0.00021947801,0.00020476943,0.011871291],"study_design_scores_gemma":[0.000033612072,0.00063434424,0.8148305,0.000025979738,0.00007308718,0.06795301,0.00046213763,0.0019222405,0.11158806,0.0002583753,0.002203928,0.000014753789],"about_ca_topic_score_codex":0.0003871667,"about_ca_topic_score_gemma":0.00026883555,"teacher_disagreement_score":0.00095648394,"about_ca_system_score_codex":0.00011631329,"about_ca_system_score_gemma":0.00007509431,"threshold_uncertainty_score":0.0031997561},"labels":[],"label_agreement":null},{"id":"W2978024463","doi":"10.1002/path.5351","title":"Dysregulation of AMPA receptor subunit expression in sporadic ALS post‐mortem brain","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Amyotrophic Lateral Sclerosis Research","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Medical Research Council Canada; Academy of Medical Sciences; MND Scotland","keywords":"AMPA receptor; Protein subunit; Neuroscience; Receptor; Expression (computer science); Biology; Glutamate receptor; Genetics; Gene; Computer science","score_opus":0.020349270058037782,"score_gpt":0.3016960611906518,"score_spread":0.281346791132614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978024463","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741685,0.0009576099,0.00055820204,0.0000151977465,0.000010981282,0.000010107896,0.00023973284,0.000030355097,0.0007609896],"genre_scores_gemma":[0.99742424,0.00046087487,0.00052011036,0.000025233745,0.000007569452,0.000021911668,0.0004804229,0.0000087503895,0.0010508418],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999435,0.00000529086,0.00000538881,0.0000124547705,0.00001951807,0.000013876001],"domain_scores_gemma":[0.99991894,0.000008535039,0.00002468349,0.000005620663,0.000026423319,0.000015735124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001057048,0.00023530402,0.00019124083,0.0005394421,0.00023950024,0.000184442,0.00012879951,0.00026340628,0.0012464605],"category_scores_gemma":[0.00015295023,0.00012989526,0.00010431256,0.00015177086,0.0002490976,0.00010092224,0.00017486734,0.00019906598,0.00036804224],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002996821,0.000020572184,0.0040932815,0.00004826515,0.00001383631,0.0006707295,0.00007677062,0.000020943193,0.99319506,0.000019256677,0.000048818718,0.0014927483],"study_design_scores_gemma":[0.00003221143,0.0012883176,0.637534,0.00004514601,0.000089045025,0.010713587,0.00051592325,0.00082064205,0.34637246,0.00032227082,0.0022501391,0.00001624226],"about_ca_topic_score_codex":0.00065358845,"about_ca_topic_score_gemma":0.0012580353,"teacher_disagreement_score":0.0012464605,"about_ca_system_score_codex":0.00013639769,"about_ca_system_score_gemma":0.00008395,"threshold_uncertainty_score":0.0041698217},"labels":[],"label_agreement":null},{"id":"W2978246720","doi":"10.1002/path.5350","title":"Inflammatory macrophages switch to CCL17‐expressing phenotype and promote peritoneal fibrosis","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Phagocytosis and Immune Regulation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Mrs. Hsiu-Chin Lee Kidney Research Foundation; National Health Research Institutes; Ministry of Science and Technology of Thailand; National Taiwan University; National Taiwan University Hospital; Ministry of Science and Technology, Taiwan","keywords":"Phenotype; Fibrosis; CCL17; Medicine; Immunology; Cancer research; Pathology; Chemokine; Biology; Inflammation; Genetics; Gene","score_opus":0.007263088091827997,"score_gpt":0.23110057524327568,"score_spread":0.2238374871514477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978246720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974605,0.00070395466,0.0008889792,0.000075080294,0.000020236477,0.000019756617,0.00010555866,0.00004257239,0.0006833874],"genre_scores_gemma":[0.99588805,0.00048439816,0.0009177984,0.00012409472,0.000017230182,0.00004625597,0.00017740419,0.00001204176,0.0023327372],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989605,0.000018074452,0.00000978885,0.000013728398,0.000015976195,0.00004633582],"domain_scores_gemma":[0.99987674,0.000011726157,0.000032859047,0.000009678513,0.000014700281,0.000054293592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015992198,0.00028904705,0.00018931969,0.00022692216,0.00012539717,0.0002279646,0.000091016605,0.00017829206,0.0021003126],"category_scores_gemma":[0.00007876687,0.00011212991,0.00032110084,0.00010496712,0.00016887675,0.00014557468,0.00020056806,0.00051347195,0.0004676101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005339336,0.00012562395,0.0030683384,0.00006425245,0.000008497422,0.00023610557,0.000038460046,0.000030954336,0.9935428,0.000074982796,0.00011089139,0.002165192],"study_design_scores_gemma":[0.00022488118,0.0024115753,0.05129502,0.000042420677,0.00009216352,0.0020314413,0.00028921285,0.00088390155,0.93550646,0.0002297798,0.006980594,0.0000126370805],"about_ca_topic_score_codex":0.00016505773,"about_ca_topic_score_gemma":0.00021367538,"teacher_disagreement_score":0.0021003126,"about_ca_system_score_codex":0.00012045193,"about_ca_system_score_gemma":0.00017106367,"threshold_uncertainty_score":0.007026255},"labels":[],"label_agreement":null},{"id":"W2984271710","doi":"10.1002/path.5364","title":"Recent advances in chronic obstructive pulmonary disease pathogenesis: from disease mechanisms to precision medicine","year":2019,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Chronic Obstructive Pulmonary Disease (COPD) Research","field":"Medicine","cited_by":207,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Universitair Medisch Centrum Groningen; Regeneron Pharmaceuticals; Teva Pharmaceutical Industries; Sanofi; GlaxoSmithKline; Pfizer; AstraZeneca; Eli Lilly and Company","keywords":"COPD; Medicine; Disease; Pathological; Intensive care medicine; Pulmonary disease; Smoking cessation; Pathogenesis; Lung; Pathology; Internal medicine","score_opus":0.04478353418919539,"score_gpt":0.3654426356937049,"score_spread":0.3206591015045095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2984271710","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00004877843,0.99814725,0.00014767873,0.00079636957,0.00038460057,0.0000029147338,0.00001138001,0.000008229391,0.00045292763],"genre_scores_gemma":[0.0005048493,0.99819094,0.00020325044,0.00040190158,0.00041693266,0.000004522443,0.000018347328,0.0000017957257,0.0002574504],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99951506,0.00012211685,0.00006797456,0.000087318105,0.00015715249,0.0000504804],"domain_scores_gemma":[0.9980027,0.001201508,0.00015000836,0.00006450265,0.00043123373,0.00014994372],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018363659,0.0009937884,0.0019219596,0.0027704807,0.00044977054,0.001938112,0.0012291155,0.0019323942,0.0041548014],"category_scores_gemma":[0.0025810455,0.00032127817,0.00079772517,0.0027804475,0.0011723086,0.0027391294,0.0014416078,0.003031444,0.002321818],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009674343,0.000056430752,0.00021270457,0.027067,0.00012864672,0.00016564548,0.00015119724,0.00042297182,0.00090751477,0.009739273,0.03722104,0.92383087],"study_design_scores_gemma":[0.000012185951,0.000081661114,0.00048713386,0.005500305,0.00010952922,0.00053052703,0.00010696728,0.000079514226,0.00019251191,0.005467086,0.9874101,0.000022357077],"about_ca_topic_score_codex":0.0011431386,"about_ca_topic_score_gemma":0.001539767,"teacher_disagreement_score":0.0041548014,"about_ca_system_score_codex":0.0011667919,"about_ca_system_score_gemma":0.0021217007,"threshold_uncertainty_score":0.013899207},"labels":[],"label_agreement":null},{"id":"W2994917102","doi":"10.1002/path.5373","title":"Clinicopathological and molecular characterisation of ‘multiple‐classifier’ endometrial carcinomas","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":402,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"National Institutes of Health; National Cancer Institute; KWF Kankerbestrijding; Academy of Medical Sciences; Cancer Research UK","keywords":"Classifier (UML); Biology; Endometrial cancer; Carcinoma; Cancer research; Pathology; Medicine; Cancer; Genetics; Artificial intelligence; Computer science","score_opus":0.03472323636634328,"score_gpt":0.2973658092991086,"score_spread":0.26264257293276533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2994917102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99926025,0.000188124,0.00015871813,0.000013821326,0.0000030645315,0.000006653178,0.0000767521,0.0000040788373,0.00028854274],"genre_scores_gemma":[0.99952185,0.000057639387,0.00017469794,0.000006814127,0.0000068100735,0.000005700664,0.00015731972,0.000002348785,0.000066994784],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99955183,0.000056173274,0.0000735383,0.0001229595,0.00010725853,0.000088276516],"domain_scores_gemma":[0.99875164,0.0002809345,0.00046027862,0.00016543471,0.00015860345,0.00018315937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005361752,0.00022114613,0.0003136254,0.0010420316,0.00028538675,0.00065796584,0.00030196612,0.0003989563,0.0011661185],"category_scores_gemma":[0.0021953825,0.00023734476,0.00025246025,0.0006188308,0.00035878175,0.0004127867,0.0003730454,0.00022291059,0.00024851022],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024090936,0.000015307836,0.9878985,0.000017127133,0.000019717363,0.0017500106,0.000072355426,0.0001159202,0.0055855396,0.00003776,0.000104121784,0.0041427473],"study_design_scores_gemma":[0.000010086655,0.000115227886,0.97935826,0.000008010232,0.000026386782,0.017394047,0.00023082849,0.0006969709,0.0012683073,0.00008266597,0.00080049783,0.0000086621],"about_ca_topic_score_codex":0.0008801663,"about_ca_topic_score_gemma":0.0011674534,"teacher_disagreement_score":0.0011661185,"about_ca_system_score_codex":0.00025896955,"about_ca_system_score_gemma":0.00020334747,"threshold_uncertainty_score":0.0039010048},"labels":[],"label_agreement":null},{"id":"W2995292698","doi":"10.1002/path.5375","title":"p53 immunohistochemistry is an accurate surrogate for <i>TP53</i> mutational analysis in endometrial carcinoma biopsies","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":298,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Vancouver General Hospital","funders":"Cancer Research UK","keywords":"Immunohistochemistry; Biology; Amplicon; Serous carcinoma; Serous fluid; Concordance; Carcinoma; Pathology; Staining; Ovarian carcinoma; Polymerase chain reaction; Cancer; Medicine; Genetics; Gene; Ovarian cancer","score_opus":0.014134202587920553,"score_gpt":0.2856370096278998,"score_spread":0.27150280703997925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995292698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928116,0.0018621519,0.0034150393,0.000046496112,0.000022357213,0.000042562217,0.0001392501,0.000046719157,0.0016138551],"genre_scores_gemma":[0.99838555,0.0001613078,0.0011767804,0.000035410467,0.000012581326,0.000013918384,0.00011015112,0.000016356787,0.000087989814],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9891616,0.004451666,0.001772652,0.0018891696,0.0023203865,0.00040455043],"domain_scores_gemma":[0.9797433,0.0082443105,0.0052638133,0.0028543572,0.0033977798,0.0004964992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012033842,0.0003491409,0.0007448583,0.0013208217,0.0003434319,0.0013644639,0.0006418582,0.000607439,0.00087579724],"category_scores_gemma":[0.025675545,0.00045739635,0.0003526058,0.0008080043,0.00082798174,0.00052553124,0.0008047808,0.00041033188,0.0006039094],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007708262,0.000028544078,0.96856403,0.0001475757,0.00018075941,0.00064025825,0.00052188674,0.0004292094,0.018844094,0.00006880031,0.00023177077,0.009572227],"study_design_scores_gemma":[0.00002531801,0.0005684117,0.9736388,0.00010773456,0.00017763374,0.0041901586,0.0005459365,0.0026014517,0.016788147,0.00014555176,0.0011903717,0.00002044621],"about_ca_topic_score_codex":0.0012212524,"about_ca_topic_score_gemma":0.0012889691,"teacher_disagreement_score":0.012033842,"about_ca_system_score_codex":0.00041643908,"about_ca_system_score_gemma":0.0002409365,"threshold_uncertainty_score":0.06364179},"labels":[],"label_agreement":null},{"id":"W2996314623","doi":"10.1002/path.5372","title":"Interpretation of somatic <i>POLE</i> mutations in endometrial carcinoma","year":2019,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":392,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; BC Cancer Agency; University of British Columbia","funders":"Health Foundation; Academy of Medical Sciences; KWF Kankerbestrijding; National Institute for Health and Care Research; BC Cancer Foundation; Cancer Research UK; Michael Smith Health Research BC","keywords":"Somatic cell; Interpretation (philosophy); Carcinoma; Endometrial cancer; Internal medicine; Oncology; Medicine; Biology; Genetics; Philosophy; Cancer; Gene","score_opus":0.01531422504582592,"score_gpt":0.2849622340298432,"score_spread":0.2696480089840173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2996314623","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959786,0.0010092566,0.0014136146,0.000042137886,0.000012723173,0.000018988614,0.00020606905,0.000042957796,0.0012756452],"genre_scores_gemma":[0.9977337,0.00025224453,0.0017911338,0.000024331322,0.0000075373696,0.0000053935773,0.00011051637,0.000005697666,0.000069439986],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994579,0.00021364914,0.000094354786,0.000065169814,0.00012427222,0.000044682572],"domain_scores_gemma":[0.99870574,0.0005639744,0.00031037853,0.00010022587,0.0002297085,0.00009002183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001445128,0.00032530338,0.00033752428,0.0028897994,0.00025755935,0.0008434315,0.00038160247,0.0003492053,0.00062172604],"category_scores_gemma":[0.0036176885,0.00016074251,0.00025092755,0.000979306,0.00031856698,0.00020857324,0.0004371854,0.00016805127,0.00019680803],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007191371,0.000025031646,0.9195243,0.0001585984,0.00010585717,0.0025136485,0.0003037619,0.0011109686,0.057977922,0.00013853834,0.00021614785,0.017206116],"study_design_scores_gemma":[0.000016431582,0.00015098334,0.95558524,0.000046904945,0.00010942992,0.009988007,0.00048476158,0.008334285,0.023646865,0.0004663396,0.0011534215,0.00001741694],"about_ca_topic_score_codex":0.0009058758,"about_ca_topic_score_gemma":0.0013285076,"teacher_disagreement_score":0.0028897994,"about_ca_system_score_codex":0.00023844281,"about_ca_system_score_gemma":0.00014608055,"threshold_uncertainty_score":0.0076426864},"labels":[],"label_agreement":null},{"id":"W3006878337","doi":"10.1002/path.5400","title":"Making heads or tails – the emergence of <i>capicua</i> (<i>CIC</i>) as an important multifunctional tumour suppressor","year":2020,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Biology; Suppressor; Transcription factor; Carcinogenesis; Cancer research; Receptor tyrosine kinase; Gene; Tyrosine kinase; Kinase; Cell growth; Signal transduction; Genetics","score_opus":0.1092804041222265,"score_gpt":0.4013773445473541,"score_spread":0.29209694042512757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006878337","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00021351324,0.9979557,0.00014421948,0.00031574536,0.00027763343,0.0000029033838,0.000016601118,0.00000940116,0.0010643863],"genre_scores_gemma":[0.0013517688,0.996491,0.00018600748,0.00037043443,0.00020407351,0.000004732834,0.000047386806,0.0000039648457,0.0013405574],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998852,0.000015339525,0.00001569805,0.00002474582,0.000043494554,0.000015434349],"domain_scores_gemma":[0.99985504,0.00005570308,0.000022353222,0.0000060543334,0.00003847688,0.000022276292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000414232,0.0005471261,0.00070402713,0.0014102135,0.00018022621,0.0007128273,0.0005893315,0.0008423802,0.0017723638],"category_scores_gemma":[0.00044803898,0.00020425768,0.00026838787,0.00095642876,0.00056102645,0.0011630368,0.000577092,0.0014185281,0.0017788411],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009024584,0.00003211361,0.00015574846,0.008999159,0.00004245952,0.00034398068,0.00006458369,0.00028650736,0.005077731,0.008013786,0.040821537,0.93607205],"study_design_scores_gemma":[0.000007398972,0.00004167369,0.0003528886,0.0006804364,0.000021325372,0.0012499945,0.000021916743,0.000030375762,0.0009381921,0.00097103073,0.99567634,0.000008398577],"about_ca_topic_score_codex":0.0006405529,"about_ca_topic_score_gemma":0.0010302454,"teacher_disagreement_score":0.0017723638,"about_ca_system_score_codex":0.00052152516,"about_ca_system_score_gemma":0.0005781523,"threshold_uncertainty_score":0.005929172},"labels":[],"label_agreement":null},{"id":"W3006896848","doi":"10.1002/path.5405","title":"Long non‐coding RNAs in development and disease: conservation to mechanisms","year":2020,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":239,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Medical Research Council Canada; University of Leeds","keywords":"Coding (social sciences); Computational biology; Disease; Biology; Medicine; Pathology; Mathematics","score_opus":0.03296147366395039,"score_gpt":0.3295877090098405,"score_spread":0.2966262353458901,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006896848","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.021802135,0.8916207,0.016625036,0.04661108,0.0020357368,0.000026462058,0.0002041006,0.00017957135,0.02089521],"genre_scores_gemma":[0.28002384,0.66215295,0.0182391,0.016005734,0.0060487124,0.00012555247,0.00035732338,0.00015179743,0.016894892],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99943393,0.00015490639,0.000044431734,0.0001902984,0.00010046208,0.00007600608],"domain_scores_gemma":[0.99919146,0.00036827687,0.0001380767,0.00008687368,0.00010381447,0.00011145923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001566554,0.000337687,0.00069832854,0.0007044348,0.0008185948,0.002536045,0.0007718891,0.0013121308,0.0022965753],"category_scores_gemma":[0.0012494243,0.0001874341,0.00027025025,0.00096817466,0.0044880714,0.0027949775,0.001961472,0.002205414,0.00073090586],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029629,0.00005268814,0.0077596414,0.002995331,0.00012404082,0.0020006024,0.0060737715,0.0008426868,0.028851036,0.25703818,0.018959928,0.6750058],"study_design_scores_gemma":[0.000028757184,0.00021158493,0.024322612,0.0015980861,0.00008160603,0.004097699,0.0026136562,0.0005933345,0.003836032,0.18100008,0.78152925,0.00008734649],"about_ca_topic_score_codex":0.0012612897,"about_ca_topic_score_gemma":0.0013700363,"teacher_disagreement_score":0.002536045,"about_ca_system_score_codex":0.0011106653,"about_ca_system_score_gemma":0.0014294847,"threshold_uncertainty_score":0.008284867},"labels":[],"label_agreement":null},{"id":"W3009345706","doi":"10.1002/path.5422","title":"Molecular pathology of Lynch syndrome","year":2020,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":174,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Cancer Research UK","keywords":"Lynch syndrome; Molecular pathology; Pathology; Medicine; Biology; Internal medicine; Genetics; Cancer; DNA mismatch repair; Colorectal cancer; Gene","score_opus":0.04133690075015431,"score_gpt":0.3451053948571583,"score_spread":0.303768494107004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3009345706","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67320514,0.21501584,0.020024197,0.009938695,0.0013206528,0.0001213241,0.0023716802,0.000900357,0.07710218],"genre_scores_gemma":[0.95573723,0.029231403,0.0048368806,0.0007019136,0.0003379878,0.000023817189,0.0006795127,0.000034719702,0.00841648],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99987197,0.000034562883,0.000010448544,0.000029412971,0.00003215387,0.000021370332],"domain_scores_gemma":[0.999788,0.00004899911,0.00007503598,0.00001753323,0.000035716657,0.000034628272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017831175,0.0003912743,0.00018105865,0.0009396072,0.00019881256,0.0005037505,0.0001949722,0.0006015334,0.0030011637],"category_scores_gemma":[0.0005631829,0.00012513284,0.00014780492,0.00030008118,0.0004322351,0.00026287165,0.0003931457,0.00030813355,0.0008062995],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063092285,0.000045075143,0.06517385,0.0015338218,0.00022527752,0.08011273,0.0007127082,0.0011196297,0.6237937,0.039738987,0.017061474,0.16985185],"study_design_scores_gemma":[0.00006863229,0.00037623692,0.19677313,0.0006430495,0.0001842959,0.36953798,0.0005734598,0.0018415748,0.07444574,0.018826848,0.33665183,0.00007722366],"about_ca_topic_score_codex":0.0006260465,"about_ca_topic_score_gemma":0.0006044783,"teacher_disagreement_score":0.0030011637,"about_ca_system_score_codex":0.00028638353,"about_ca_system_score_gemma":0.00018734798,"threshold_uncertainty_score":0.010039866},"labels":[],"label_agreement":null},{"id":"W3009878673","doi":"10.1002/path.5417","title":"Applying single‐cell technologies to clinical pathology: progress in nephropathology","year":2020,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Versus Arthritis; Arthritis Research UK; National Institute for Health and Care Research; Medical Research Council Canada; Cancer Research UK; Wellcome Trust","keywords":"Disease; Biology; Transcriptome; Computational biology; Cell type; Cell; Epigenetics; Phenotype; Transplantation; Alloimmunity; Bioinformatics; Gene; Pathology; Medicine; Gene expression; Antigen; Genetics; Internal medicine","score_opus":0.06165875650913776,"score_gpt":0.34484102705891123,"score_spread":0.28318227054977346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3009878673","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0046005473,0.9174805,0.05676905,0.01189396,0.0028444277,0.000111345726,0.00030966706,0.000591044,0.0053993296],"genre_scores_gemma":[0.037413668,0.87699085,0.06808543,0.0078208465,0.0050683944,0.00028503925,0.00059602497,0.00021306738,0.0035266683],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99637645,0.0012031975,0.0002834065,0.000601896,0.0013738333,0.00016129224],"domain_scores_gemma":[0.99135613,0.004445863,0.00049869454,0.00088537036,0.0022341243,0.00057974836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0089453375,0.0010879848,0.0026135922,0.0036528183,0.00070483505,0.0053407983,0.0019248998,0.0027120356,0.0040190755],"category_scores_gemma":[0.0062756417,0.00074257824,0.0010769131,0.0019751932,0.0038853716,0.0048771272,0.0029734531,0.0053529656,0.0030131268],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003743055,0.00022310087,0.0061792256,0.010103459,0.00030900256,0.0006513067,0.0007932966,0.0011422638,0.06103028,0.03365145,0.042544264,0.84299797],"study_design_scores_gemma":[0.00007710101,0.00065711053,0.0105105555,0.004150709,0.00031946908,0.0053354283,0.0010188079,0.0040641003,0.031934936,0.05227718,0.88933784,0.00031675477],"about_ca_topic_score_codex":0.0011777558,"about_ca_topic_score_gemma":0.0010514511,"teacher_disagreement_score":0.0089453375,"about_ca_system_score_codex":0.0015914714,"about_ca_system_score_gemma":0.0018281874,"threshold_uncertainty_score":0.04730797},"labels":[],"label_agreement":null},{"id":"W3010122169","doi":"10.1002/path.5406","title":"The path to a better biomarker: application of a risk management framework for the implementation of PD‐L1 and TILs as immuno‐oncology biomarkers in breast cancer clinical trials and daily practice","year":2020,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":226,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Ontario Institute for Cancer Research; BC Cancer Agency","funders":"Chugai Pharmaceutical; Genentech; National Breast Cancer Foundation; Puma Biotechnology; Novartis Pharma; EMD Serono; Mersana Therapeutics; Incyte; Taiho Pharmaceutical; Genomic Health; Daiichi Sankyo Europe; Breast Cancer Research Foundation; World Health Organization; GlaxoSmithKline; Celgene; Bayer; Bristol-Myers Squibb; Eli Lilly and Company; AstraZeneca; Amgen; Pfizer","keywords":"Medicine; Oncology; Breast cancer; Biomarker; Clinical Practice; Internal medicine; Clinical trial; Clinical Oncology; Cancer; Medical physics; Family medicine","score_opus":0.0819935595309814,"score_gpt":0.5147935023912429,"score_spread":0.43279994286026147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010122169","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00374486,0.018199127,0.637651,0.32565913,0.0025031352,0.0017416446,0.0003971292,0.0007121482,0.009391835],"genre_scores_gemma":[0.1271862,0.0082188,0.80762315,0.044154625,0.0055007315,0.004524405,0.00038553023,0.0002784659,0.0021280884],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.75110203,0.20098412,0.014116893,0.009446984,0.021994209,0.0023558408],"domain_scores_gemma":[0.72636664,0.17906503,0.026623053,0.015204666,0.043594357,0.009146223],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.31742963,0.0028492159,0.00472015,0.0075707533,0.0032920141,0.019244093,0.0062074396,0.009908504,0.0040136524],"category_scores_gemma":[0.3025664,0.001790074,0.0034207872,0.0037529331,0.016267294,0.01700533,0.012892321,0.017606178,0.0021031278],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010939965,0.00065716164,0.0151604535,0.0027248065,0.0010452635,0.00040587902,0.0027975624,0.016965767,0.0014361481,0.5102749,0.052976962,0.39446115],"study_design_scores_gemma":[0.0006309392,0.0017738092,0.0041269492,0.0046732984,0.0007662257,0.0005992276,0.0011630774,0.046703268,0.0017595136,0.82391256,0.11345209,0.00043908856],"about_ca_topic_score_codex":0.003940362,"about_ca_topic_score_gemma":0.0031938886,"teacher_disagreement_score":0.31742963,"about_ca_system_score_codex":0.009779517,"about_ca_system_score_gemma":0.032745715,"threshold_uncertainty_score":0.8417308},"labels":[],"label_agreement":null},{"id":"W3013455206","doi":"10.1002/path.5438","title":"Control of neutrophil influx during peritonitis by transcriptional cross‐regulation of chemokine <scp>CXCL1</scp> by <scp>IL</scp>‐17 and <scp>IFN</scp>‐γ","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"FP7 People: Marie-Curie Actions; Medical Research Council Canada; Narodowe Centrum Nauki; Cardiff University; Medical Research Council; National Institute for Health and Care Research","keywords":"CXCL1; Chemokine; Peritonitis; Cytokine; Immunology; Inflammation; In vitro; Tumor necrosis factor alpha; Chemistry; Interleukin 8; Andrology; Biology; Medicine; Internal medicine; Biochemistry","score_opus":0.006255075605895495,"score_gpt":0.20406755863343948,"score_spread":0.19781248302754398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3013455206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734795,0.00085423153,0.0011100675,0.00004274992,0.000010538949,0.00002263267,0.00025048916,0.000018873227,0.00034224],"genre_scores_gemma":[0.9972134,0.00048098326,0.0013453542,0.000043605378,0.000013415241,0.000069525406,0.00038375516,0.0000061899455,0.0004437379],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997266,0.000079687656,0.00002655798,0.000052796855,0.000045657547,0.00006874421],"domain_scores_gemma":[0.9997955,0.00005461472,0.000065798944,0.000025036417,0.000025721252,0.000033365002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034018507,0.00019448945,0.00032717545,0.00021869241,0.000130932,0.00043108052,0.00008023936,0.00017568795,0.0009313537],"category_scores_gemma":[0.0002307673,0.00015744241,0.00021593191,0.00017017023,0.00027590815,0.00017011732,0.00020868084,0.0004786437,0.0002226071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035231916,0.000028857054,0.002034574,0.000040307063,0.0000036027052,0.00004408395,0.000056455254,0.000046282003,0.99607617,0.000024828696,0.00002271603,0.001269915],"study_design_scores_gemma":[0.000045344204,0.00080786576,0.10017015,0.000018431769,0.000023123292,0.0003873398,0.0002034422,0.0012861823,0.89542633,0.00006592152,0.0015584002,0.0000074127993],"about_ca_topic_score_codex":0.00022769677,"about_ca_topic_score_gemma":0.00034130056,"teacher_disagreement_score":0.0009313537,"about_ca_system_score_codex":0.0001897375,"about_ca_system_score_gemma":0.00018319723,"threshold_uncertainty_score":0.0031157136},"labels":[],"label_agreement":null},{"id":"W3016896053","doi":"10.1002/path.5452","title":"Fundamental control of grade‐specific colorectal cancer morphology by Src regulation of ezrin–centrosome engagement","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Caveolin-1 and cellular processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Hospital for Sick Children; Medical Research Council Canada; Georgetown University; University of Toronto; AstraZeneca","keywords":"Biology; Centrosome; Proto-oncogene tyrosine-protein kinase Src; Ezrin; Cell biology; Mitosis; Cancer research; Cancer; Cell cycle; Cell; Kinase; Genetics; Cytoskeleton","score_opus":0.014347265685096073,"score_gpt":0.2415827320723514,"score_spread":0.22723546638725534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016896053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939832,0.0015550519,0.0018902649,0.00007644637,0.000010371824,0.000011402479,0.00025416326,0.00006355833,0.0021554774],"genre_scores_gemma":[0.99770606,0.0005739967,0.00037281172,0.00001841205,0.000003736877,0.000007408916,0.00017310392,0.000008251224,0.0011362489],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989736,0.000013694547,0.000008221271,0.000022063077,0.000033501976,0.000025118325],"domain_scores_gemma":[0.9999267,0.000008006528,0.00002903183,0.000007818134,0.000011775301,0.000016635111],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008387359,0.00015103603,0.00011865438,0.0001566776,0.00010643577,0.000396427,0.00009772547,0.00012040242,0.001281538],"category_scores_gemma":[0.00011020983,0.00009959061,0.00011791044,0.000088784705,0.00015434454,0.00015145412,0.0002485991,0.00022796133,0.0003909943],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042714346,0.0000056968697,0.0006786914,0.000019197712,0.0000025334155,0.000033293672,0.000011193027,0.000043019318,0.9969029,0.000108743574,0.00003261411,0.0021194],"study_design_scores_gemma":[0.000015239211,0.00021784565,0.122091286,0.000008993683,0.00002068893,0.0006279806,0.00010968738,0.0034124386,0.86808944,0.00016355612,0.0052327025,0.000010099716],"about_ca_topic_score_codex":0.0005436502,"about_ca_topic_score_gemma":0.0011195543,"teacher_disagreement_score":0.001281538,"about_ca_system_score_codex":0.00029597912,"about_ca_system_score_gemma":0.00017177976,"threshold_uncertainty_score":0.0042871237},"labels":[],"label_agreement":null},{"id":"W3016911576","doi":"10.1002/path.5449","title":"Neutrophils expressing lysyl oxidase‐like 4 protein are present in colorectal cancer liver metastases resistant to anti‐angiogenic therapy","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; McGill University Health Centre; McGill University","funders":"","keywords":"Lysyl oxidase; Colorectal cancer; Medicine; Cancer research; Angiogenesis; Pathology; Cancer; Internal medicine; Biology; Enzyme; Biochemistry","score_opus":0.022213312837853733,"score_gpt":0.25201468991890896,"score_spread":0.22980137708105522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016911576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989054,0.00048594413,0.00024942486,0.000031925894,0.0000031909133,0.0000073532,0.000060767496,0.000008945086,0.00024702164],"genre_scores_gemma":[0.99888784,0.00019342788,0.00028324022,0.000028019558,0.0000051152088,0.000012630561,0.00013708965,0.0000027795104,0.00044984726],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999057,0.00002565901,0.0000087384515,0.000017783717,0.000024029012,0.000018058896],"domain_scores_gemma":[0.9998254,0.000031717384,0.00007987419,0.0000094681,0.000019276371,0.00003426809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116597905,0.00011520911,0.00017848902,0.00036058284,0.00011470914,0.00023372163,0.000055581237,0.00018769449,0.0009494685],"category_scores_gemma":[0.00033040525,0.00009475238,0.00007786598,0.00016162623,0.00017046806,0.00009577563,0.00013709987,0.0001789382,0.00017405157],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020413098,0.000043699598,0.07881576,0.00008701302,0.000027707703,0.001686332,0.0001552514,0.000078901205,0.9078435,0.00006223132,0.00012790512,0.009030363],"study_design_scores_gemma":[0.000086351596,0.0016897119,0.867536,0.000023409877,0.000079681944,0.010255592,0.0005270293,0.0011149537,0.11530492,0.00015466192,0.0032121476,0.000015593998],"about_ca_topic_score_codex":0.00036459978,"about_ca_topic_score_gemma":0.00042603747,"teacher_disagreement_score":0.0009494685,"about_ca_system_score_codex":0.00013374176,"about_ca_system_score_gemma":0.000073635354,"threshold_uncertainty_score":0.003176272},"labels":[],"label_agreement":null},{"id":"W3021148913","doi":"10.1002/path.5455","title":"Oligodendrocyte pathology exceeds axonal pathology in white matter in human amyotrophic lateral sclerosis","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Amyotrophic Lateral Sclerosis Research","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; “la Caixa” Foundation; Agence Nationale de la Recherche; Academy of Medical Sciences; Pathological Society of Great Britain and Ireland; National Institute for Health and Care Research","keywords":"Oligodendrocyte; Amyotrophic lateral sclerosis; C9orf72; Biology; Myelin basic protein; Myelin; Pathology; Glial fibrillary acidic protein; White matter; Spinal cord; Immunohistochemistry; Central nervous system; Neuroscience; Immunology; Medicine; Frontotemporal dementia; Disease","score_opus":0.0512817396991768,"score_gpt":0.29877114059949994,"score_spread":0.24748940090032315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021148913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99459475,0.0028073716,0.00037711638,0.000035566118,0.000014277069,0.00001575987,0.00025015813,0.0000566315,0.0018484283],"genre_scores_gemma":[0.99676347,0.0014064339,0.00046979726,0.000039608673,0.000019348805,0.000012602389,0.00029344286,0.00001468921,0.0009805984],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999895,0.000009483815,0.000014382887,0.000028125434,0.000041106097,0.000011803451],"domain_scores_gemma":[0.9998733,0.000010100257,0.000045939036,0.000007811308,0.000025055131,0.000037845726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016151946,0.0003563596,0.00024121645,0.0014599987,0.00034875565,0.00038470866,0.000106340514,0.00029236096,0.0013150526],"category_scores_gemma":[0.0001625266,0.00020252782,0.00012822259,0.00045206648,0.00034433496,0.00020646222,0.00028363746,0.00017150138,0.00026971873],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000940933,0.00009343815,0.0412328,0.00027116115,0.00010978837,0.0037963728,0.00035316637,0.00008517163,0.9452445,0.0002041718,0.00029676975,0.007371831],"study_design_scores_gemma":[0.000018857132,0.00040967524,0.94260687,0.00003603544,0.00011351794,0.008587984,0.00019146939,0.00029046737,0.045254778,0.00041807082,0.0020589463,0.000013381404],"about_ca_topic_score_codex":0.0018677402,"about_ca_topic_score_gemma":0.0023893781,"teacher_disagreement_score":0.0018677402,"about_ca_system_score_codex":0.00018343162,"about_ca_system_score_gemma":0.00018123897,"threshold_uncertainty_score":0.0043992996},"labels":[],"label_agreement":null},{"id":"W3021622926","doi":"10.1002/path.5457","title":"Advances in the molecular classification of pediatric brain tumors: a guide to the galaxy","year":2020,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto; McMaster Children's Hospital","funders":"Canadian Institutes of Health Research; American Brain Tumor Association","keywords":"Medicine; Brain tumor; Malignancy; Radiation therapy; Ependymoma; Glioma; Pathological; Oncology; Bioinformatics; Pathology; Internal medicine; Cancer research; Biology","score_opus":0.024426619117516667,"score_gpt":0.3507333449437056,"score_spread":0.32630672582618897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021622926","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000117146395,0.9909978,0.0012328867,0.0033132622,0.0023805478,0.000015383652,0.00009388448,0.00006112863,0.0017879513],"genre_scores_gemma":[0.00058887823,0.9897585,0.0022893883,0.0020711373,0.0027720602,0.00003467774,0.0003145991,0.0000229801,0.0021477533],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99953496,0.00010065915,0.000104918,0.00008413074,0.00013370253,0.00004161661],"domain_scores_gemma":[0.9987356,0.00045305566,0.00015180263,0.000043859975,0.00047177347,0.00014386783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013803021,0.0017207772,0.0017081748,0.006486837,0.0003487861,0.0013372272,0.0018392815,0.0015638578,0.004989899],"category_scores_gemma":[0.0025170888,0.0005152018,0.00088880025,0.0044211983,0.0011674828,0.0035531605,0.0011905035,0.004766673,0.0072937957],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006896307,0.000043779153,0.0004991078,0.004671195,0.000049526312,0.0003880714,0.000089741225,0.0004606157,0.0011622435,0.006306179,0.24734668,0.73891395],"study_design_scores_gemma":[0.0000071905965,0.00003531968,0.00066523976,0.0019623723,0.00002780145,0.0018806112,0.0000438733,0.0000939747,0.00011292203,0.0028277247,0.9923248,0.0000180819],"about_ca_topic_score_codex":0.002432986,"about_ca_topic_score_gemma":0.0029401511,"teacher_disagreement_score":0.006486837,"about_ca_system_score_codex":0.0013762966,"about_ca_system_score_gemma":0.0017083861,"threshold_uncertainty_score":0.016692877},"labels":[],"label_agreement":null},{"id":"W3026402988","doi":"10.1002/path.5469","title":"Trop2 is upregulated in the transition to dysplasia in the metaplastic gastric mucosa","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Gastric Cancer Management and Outcomes","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"China Scholarship Council; U.S. Department of Veterans Affairs; American Association for Cancer Research; National Cancer Institute; Cancer Research UK; National Institute of Diabetes and Digestive and Kidney Diseases; U.S. Department of Defense","keywords":"Intestinal metaplasia; Dysplasia; KRAS; Metaplasia; Pathology; Cancer; Cancer research; Gene knockdown; Biology; Medicine; Internal medicine; Colorectal cancer; Cell culture","score_opus":0.025185210402152564,"score_gpt":0.27218903543974443,"score_spread":0.24700382503759186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3026402988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99313533,0.0027416465,0.0010654618,0.00010421475,0.000028221064,0.000017866078,0.0012349728,0.00011619034,0.0015561848],"genre_scores_gemma":[0.99484295,0.00081004854,0.00070897344,0.00010493964,0.000012101232,0.000027348811,0.001456742,0.000024803017,0.0020121308],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999876,0.000015489843,0.000008459136,0.00003265191,0.000036611607,0.000030774456],"domain_scores_gemma":[0.999808,0.000015614483,0.000053037445,0.000013118878,0.00003089902,0.00007935136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012495744,0.00021296408,0.00023939203,0.00035857782,0.00019993626,0.0003851727,0.000073497504,0.00032762554,0.0016945325],"category_scores_gemma":[0.00015613459,0.0002151364,0.00029861965,0.00020687941,0.00018305109,0.00015571946,0.00018410817,0.00039109177,0.0004352454],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002172577,0.000008435073,0.0021062812,0.000049426406,0.00000865523,0.000242587,0.000023528164,0.000025923815,0.99664116,0.000032563727,0.00009713364,0.0005470345],"study_design_scores_gemma":[0.000059634418,0.0006767906,0.39437157,0.00005382047,0.0000968289,0.005467013,0.000408638,0.0014636088,0.5876792,0.00012529409,0.009567758,0.00002984297],"about_ca_topic_score_codex":0.0005260269,"about_ca_topic_score_gemma":0.00092608825,"teacher_disagreement_score":0.0016945325,"about_ca_system_score_codex":0.00020501902,"about_ca_system_score_gemma":0.00013746574,"threshold_uncertainty_score":0.0056687593},"labels":[],"label_agreement":null},{"id":"W3028267254","doi":"10.1002/path.5476","title":"The systemic influence of chronic smoking on skin structure and mechanical function","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Skin Protection and Aging","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; University of Manchester; Medical Research Council; National Institute for Health and Care Research","keywords":"Fibrillin; Elastin; Dermis; Extracellular matrix; Microfibril; Medicine; Pathology; Chemistry; Biology; Cell biology","score_opus":0.012247133540889401,"score_gpt":0.2521792046955132,"score_spread":0.23993207115462378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3028267254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953695,0.0029785056,0.0003853173,0.000049685354,0.000011108209,0.000011962493,0.00010407314,0.000007514011,0.0010822848],"genre_scores_gemma":[0.9975563,0.0012424872,0.00019255519,0.000041103303,0.00001720014,0.000009849958,0.0000731083,0.0000028714094,0.00086443045],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99989915,0.000019645888,0.000006339203,0.000027076365,0.000026833699,0.000021015983],"domain_scores_gemma":[0.9998412,0.000035147965,0.00004249417,0.000020055184,0.00002155016,0.00003939239],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001623912,0.00015387122,0.00019714046,0.00016821527,0.00020429058,0.00028656897,0.00006937217,0.00026479218,0.0019549187],"category_scores_gemma":[0.00015308404,0.00010122564,0.00020748941,0.00013353596,0.0002741573,0.00017972529,0.00020606497,0.00030733668,0.00017301377],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007149755,0.00014194992,0.09122183,0.00013425866,0.000067251436,0.0004125417,0.0001444468,0.00007027352,0.89294267,0.00009865364,0.000068254936,0.013982871],"study_design_scores_gemma":[0.000006124211,0.0013101011,0.96426857,0.0000145246595,0.00006651887,0.00076337653,0.0001565813,0.00019357644,0.032405816,0.00007510905,0.0007333039,0.0000064613905],"about_ca_topic_score_codex":0.00073257665,"about_ca_topic_score_gemma":0.0011594876,"teacher_disagreement_score":0.0019549187,"about_ca_system_score_codex":0.000113768816,"about_ca_system_score_gemma":0.00012855056,"threshold_uncertainty_score":0.0065398216},"labels":[],"label_agreement":null},{"id":"W3034006693","doi":"10.1002/path.5481","title":"Stat2 loss disrupts damage signalling and is protective in acute pancreatitis","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatitis Pathology and Treatment","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Medical Research Council Canada","keywords":"STAT2; Cytokine; Inflammation; Tumor necrosis factor alpha; Acute pancreatitis; Cancer research; PDX1; Pancreatitis; Biology; Chemistry; Medicine; Endocrinology; Immunology; Internal medicine; Phosphorylation; Cell biology; STAT3; stat","score_opus":0.019452535203038353,"score_gpt":0.28718939523552117,"score_spread":0.2677368600324828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3034006693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99296373,0.0017867916,0.0015166372,0.00031993334,0.00016886192,0.000036192036,0.0016309686,0.00022641585,0.001350458],"genre_scores_gemma":[0.9929087,0.0007633552,0.0006842322,0.0001859411,0.000029278946,0.00005709205,0.001535281,0.000058279413,0.0037778139],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997392,0.00003654207,0.000032885306,0.00005226404,0.00005912913,0.00007999002],"domain_scores_gemma":[0.99973804,0.000025809482,0.00008645757,0.000024116645,0.000012215895,0.000113365975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019720683,0.0005814415,0.00038496236,0.0004210303,0.00019439658,0.00051613944,0.0003072456,0.0005541423,0.0033017413],"category_scores_gemma":[0.00012131725,0.000288651,0.0004887608,0.00029023914,0.00059893046,0.0003441953,0.00026160726,0.0012586208,0.000850336],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008970817,0.00008502949,0.0002287424,0.00006842438,0.000012900924,0.000076779004,0.000011349164,0.00010691514,0.9975459,0.00009923298,0.000113061535,0.00075454655],"study_design_scores_gemma":[0.0002583217,0.002095666,0.012888136,0.000034559795,0.000067734334,0.0009625324,0.00013174543,0.0018212958,0.97608644,0.00020842861,0.005423907,0.000021275171],"about_ca_topic_score_codex":0.0003042145,"about_ca_topic_score_gemma":0.00048663956,"teacher_disagreement_score":0.0033017413,"about_ca_system_score_codex":0.00029624676,"about_ca_system_score_gemma":0.00022239346,"threshold_uncertainty_score":0.011045396},"labels":[],"label_agreement":null},{"id":"W3036549350","doi":"10.1002/path.5493","title":"<scp>SMARCB1</scp> loss induces druggable cyclin <scp>D1</scp> deficiency via upregulation of <scp><i>MIR17HG</i></scp> in atypical teratoid rhabdoid tumors","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; Montreal Children's Hospital; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"SMARCB1; Cyclin D1; Cancer research; Atypical teratoid rhabdoid tumor; Cyclin B; Downregulation and upregulation; microRNA; Cyclin D; Cyclin B1; Cell cycle; Biology; Epigenetics; Cancer; Genetics; Gene; Chromatin remodeling; Cyclin-dependent kinase 1","score_opus":0.012390368414727028,"score_gpt":0.2448801678855944,"score_spread":0.2324897994708674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3036549350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99273336,0.00181482,0.0022615306,0.0001798122,0.000035945155,0.0000344641,0.00055307354,0.00018136614,0.0022057013],"genre_scores_gemma":[0.99568605,0.00067868957,0.0012320356,0.000059673817,0.0000073072306,0.000032979406,0.0006011091,0.00003098436,0.0016710698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998647,0.00002333327,0.000018346467,0.000025845487,0.000041031068,0.000026741063],"domain_scores_gemma":[0.99990106,0.000017595352,0.000031987594,0.0000120255645,0.0000067186943,0.000030672763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013228104,0.00021283438,0.00021287477,0.00023893938,0.00014475964,0.0002743027,0.00015499302,0.00025087778,0.0013172545],"category_scores_gemma":[0.00009717459,0.00015278596,0.00021975405,0.00012783108,0.0002519152,0.00012309772,0.00014229353,0.0005429418,0.000612011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000110671535,0.000034596404,0.00043674515,0.000026752008,0.000008266459,0.00018199206,0.000008760229,0.00007636092,0.99764735,0.00010151608,0.00010510567,0.0012617144],"study_design_scores_gemma":[0.000028604753,0.00029408993,0.0066427127,0.0000042322667,0.000018343828,0.0012127833,0.000025298941,0.0012095658,0.9868007,0.000056462843,0.0037034464,0.0000037669486],"about_ca_topic_score_codex":0.00048061827,"about_ca_topic_score_gemma":0.0006294937,"teacher_disagreement_score":0.0013172545,"about_ca_system_score_codex":0.00028735335,"about_ca_system_score_gemma":0.00025902016,"threshold_uncertainty_score":0.0044066906},"labels":[],"label_agreement":null},{"id":"W3040933130","doi":"10.1002/path.5505","title":"Spontaneously occurring melanoma in animals and their relevance to human melanoma","year":2020,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Cancer Research; University of Guelph; University of Calgary","funders":"H2020 European Research Council; Medical Research Council Canada; Cancer Research UK; Wellcome Trust; Medical Research Council; Melanoma Research Alliance","keywords":"Melanoma; Relevance (law); Medicine; Dermatology; Biology; Cancer research; Political science","score_opus":0.038606973768978495,"score_gpt":0.3491783264479386,"score_spread":0.31057135267896013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3040933130","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0173858,0.94653267,0.010432442,0.0024100444,0.0017864322,0.00013842808,0.0004885846,0.00019590773,0.020629656],"genre_scores_gemma":[0.077090286,0.9019841,0.008693931,0.0018967979,0.00080831617,0.00040212116,0.0010265367,0.00007020351,0.008027772],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993017,0.00026326856,0.00006797884,0.000104588355,0.00020872665,0.000053702606],"domain_scores_gemma":[0.9993451,0.00034055632,0.00012249229,0.000062011924,0.00008796307,0.00004196017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001504662,0.00034279667,0.0006343122,0.00085479626,0.00020385472,0.00087299955,0.00049860834,0.0011815064,0.0020854324],"category_scores_gemma":[0.0010984035,0.00017515737,0.00039139146,0.0004467536,0.0008699284,0.00085456704,0.0004546714,0.0016843163,0.0009757729],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007357922,0.000505402,0.0031968597,0.023882294,0.00025769405,0.0041263737,0.0011242401,0.0010514372,0.30413064,0.04789319,0.038282074,0.57481396],"study_design_scores_gemma":[0.000035125217,0.0014658486,0.0047188774,0.0020665037,0.00015761332,0.009252766,0.00021193382,0.00020898203,0.023450699,0.0057989927,0.95258975,0.000042897773],"about_ca_topic_score_codex":0.00038596112,"about_ca_topic_score_gemma":0.00046508823,"teacher_disagreement_score":0.0020854324,"about_ca_system_score_codex":0.0004186474,"about_ca_system_score_gemma":0.00036892976,"threshold_uncertainty_score":0.007957518},"labels":[],"label_agreement":null},{"id":"W3043052708","doi":"10.1002/path.5511","title":"Single cell transcriptomes of normal endometrial derived organoids uncover novel cell type markers and cryptic differentiation of primary tumours","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"Canadian Cancer Society Research Institute","keywords":"Biology; Transcriptome; Organoid; Immunohistochemistry; Endometrial cancer; Cell type; Carcinoma; Cancer research; Cell; Endometrium; Pathology; Cancer; Gene; Gene expression; Endocrinology; Cell biology; Immunology; Medicine; Genetics","score_opus":0.0243478674687001,"score_gpt":0.22908914021914603,"score_spread":0.20474127275044593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3043052708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866218,0.00082699617,0.008223851,0.000054770506,0.000018108532,0.00002514893,0.0032299429,0.00009611038,0.0009032671],"genre_scores_gemma":[0.98392075,0.0005887129,0.006833157,0.00007038956,0.000004961513,0.000062777835,0.0068317787,0.000065700195,0.0016218318],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99986935,0.0000119277565,0.000010196213,0.000047644826,0.000040451796,0.000020407748],"domain_scores_gemma":[0.999845,0.000039624454,0.000026458203,0.000025329919,0.000033546836,0.000030026511],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017154112,0.00015242364,0.00034294132,0.00027411757,0.00019841846,0.00047649365,0.00012182849,0.00024941034,0.0005122835],"category_scores_gemma":[0.00035507028,0.00017494256,0.00041694142,0.00028052853,0.00017903958,0.00016261,0.00029474433,0.00034676166,0.0003453171],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010322877,0.000003620346,0.0031968828,0.000049989536,0.0000110944975,0.00007113644,0.0001183754,0.00059556647,0.99367934,0.000087211156,0.0000740934,0.0020094207],"study_design_scores_gemma":[0.000020370808,0.00041640666,0.26814798,0.000043963235,0.00012665922,0.001014303,0.00093596446,0.023124026,0.68922114,0.0005414674,0.016335703,0.00007199784],"about_ca_topic_score_codex":0.0016268007,"about_ca_topic_score_gemma":0.0021468543,"teacher_disagreement_score":0.0016268007,"about_ca_system_score_codex":0.00038367783,"about_ca_system_score_gemma":0.00019159583,"threshold_uncertainty_score":0.0032346249},"labels":[],"label_agreement":null},{"id":"W3044753181","doi":"10.1002/path.5509","title":"Synthesis of diagnostic quality cancer pathology images by generative adversarial networks","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"AI in cancer detection","field":"Computer Science","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; William Osler Health System; Canada's Michael Smith Genome Sciences Centre; Brampton Civic Hospital; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Adversarial system; Generative grammar; Pathology; Quality (philosophy); Cancer; Artificial intelligence; Computer science; Medicine; Internal medicine; Epistemology; Philosophy","score_opus":0.023501909961873808,"score_gpt":0.28961479217787695,"score_spread":0.26611288221600315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3044753181","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09685212,0.0002714151,0.8989981,0.00047758647,0.00010848825,0.0001348875,0.00031323993,0.001137285,0.001706803],"genre_scores_gemma":[0.7978933,0.00023642505,0.19840468,0.00033863485,0.000058294547,0.00014629499,0.00079436676,0.00017615505,0.0019518316],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9994618,0.00018975441,0.000023967847,0.00012696415,0.00014749322,0.00005005481],"domain_scores_gemma":[0.9972057,0.0018498425,0.00030366576,0.00029183595,0.00027450584,0.00007447813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002049722,0.0008625087,0.00044133095,0.000746216,0.00014983669,0.00069822604,0.0006873593,0.0007653003,0.0015115235],"category_scores_gemma":[0.0065527856,0.00044875214,0.000745029,0.00032070954,0.0007389368,0.0005252115,0.0010078888,0.0010479969,0.00033638807],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023221066,0.000053166652,0.0018551704,0.00008488937,0.00005504457,0.0001486399,0.000078432895,0.9202229,0.013493647,0.0028540562,0.0013490475,0.059572816],"study_design_scores_gemma":[0.00001097849,0.000045925677,0.00041024367,0.00000948211,0.000009188499,0.00007219558,0.000008735628,0.99122226,0.0055785845,0.0021731027,0.00045056216,0.000008833679],"about_ca_topic_score_codex":0.0014372524,"about_ca_topic_score_gemma":0.0012542247,"teacher_disagreement_score":0.002049722,"about_ca_system_score_codex":0.00082354894,"about_ca_system_score_gemma":0.00047977007,"threshold_uncertainty_score":0.010840118},"labels":[],"label_agreement":null},{"id":"W3085809921","doi":"10.1002/path.5545","title":"Genomic analysis of low‐grade serous ovarian carcinoma to identify key drivers and therapeutic vulnerabilities","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Centre Hospitalier de l’Université de Montréal; University of British Columbia","funders":"National Health and Medical Research Council; Terry Fox Research Institute; Cancer Australia","keywords":"CDKN2A; KRAS; Neuroblastoma RAS viral oncogene homolog; Serous carcinoma; Biology; Exome sequencing; Deubiquitinating enzyme; Serous fluid; Cancer research; Targeted therapy; Exome; Ovarian cancer; Comparative genomic hybridization; Oncology; Medicine; Cancer; Mutation; Internal medicine; Gene; Genetics; Chromosome","score_opus":0.01932652023255912,"score_gpt":0.27930994461448827,"score_spread":0.2599834243819292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3085809921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962812,0.0007861965,0.0007228522,0.000069965085,0.0000059147574,0.000016569375,0.0014479852,0.000030403085,0.0006389212],"genre_scores_gemma":[0.99705386,0.00034391938,0.0006967942,0.000046605546,0.0000062088893,0.000012909375,0.0016796576,0.000009544081,0.00015045443],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99984574,0.000024778541,0.000016787391,0.000042752075,0.00003906209,0.000030810377],"domain_scores_gemma":[0.9996377,0.00011051185,0.00010224087,0.000052004583,0.000053021027,0.000044441047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027910873,0.00019457571,0.00023349779,0.0013722236,0.00022927421,0.00046979147,0.0001257853,0.00020133791,0.0013388296],"category_scores_gemma":[0.001007259,0.000111663416,0.00024750104,0.0009387227,0.00016899339,0.00011651044,0.00036730684,0.00018286408,0.00021863863],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050225394,0.00003356603,0.8755627,0.00021292378,0.000239267,0.002124521,0.0002472599,0.0008110665,0.08513061,0.00027208158,0.00075545977,0.034108263],"study_design_scores_gemma":[0.000023439252,0.0001444798,0.97950774,0.00003471945,0.00019007291,0.005450819,0.00026109093,0.0014898471,0.008237935,0.00038319366,0.004268007,0.000008653374],"about_ca_topic_score_codex":0.001646969,"about_ca_topic_score_gemma":0.003044021,"teacher_disagreement_score":0.001646969,"about_ca_system_score_codex":0.00021690445,"about_ca_system_score_gemma":0.00022433272,"threshold_uncertainty_score":0.004478872},"labels":[],"label_agreement":null},{"id":"W3093743094","doi":"10.1002/path.5571","title":"<scp>miRNA</scp> repertoires of cystic fibrosis <i>ex vivo</i> models highlight <scp>miR‐181a</scp> and <scp>miR</scp>‐101 that regulate <scp>WISP1</scp> expression","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research; Association Vaincre la Mucoviscidose","keywords":"microRNA; Biology; Gene isoform; Ex vivo; Cystic fibrosis; Gene expression; Downregulation and upregulation; Gene; Cell biology; Regulation of gene expression; Cancer research; Immunology; In vivo; Genetics","score_opus":0.014469633863925132,"score_gpt":0.22645941693854124,"score_spread":0.2119897830746161,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093743094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9734524,0.0029139512,0.017263025,0.00021410568,0.00007864723,0.000055115408,0.0028035636,0.00037509977,0.0028441064],"genre_scores_gemma":[0.9832602,0.0017362209,0.0085942205,0.00019989623,0.00001564826,0.0001342968,0.0033828767,0.00013502031,0.0025415127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99977475,0.00002224056,0.000019660292,0.00006689948,0.000082387334,0.000034074186],"domain_scores_gemma":[0.999835,0.000031950058,0.000055813045,0.000024057672,0.000025730536,0.000027474987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018561311,0.00026409555,0.0002591281,0.00027250513,0.00021093615,0.00039855772,0.00012477026,0.00030903466,0.0009143157],"category_scores_gemma":[0.0001946928,0.00018281963,0.00035832953,0.0001882896,0.00029835413,0.0002565161,0.00020812327,0.00089159346,0.00046221985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009241192,0.000010010553,0.0006705496,0.000048321413,0.0000100388515,0.000055529465,0.00002324921,0.000094445655,0.99692506,0.00009216039,0.00008569705,0.0018925538],"study_design_scores_gemma":[0.000008443845,0.00019512535,0.021515753,0.000014505941,0.000045182274,0.0008861294,0.000065293134,0.0020653873,0.9702514,0.00015514538,0.0047832094,0.000014398847],"about_ca_topic_score_codex":0.00044931693,"about_ca_topic_score_gemma":0.0006185967,"teacher_disagreement_score":0.0009143157,"about_ca_system_score_codex":0.00017897045,"about_ca_system_score_gemma":0.00019242463,"threshold_uncertainty_score":0.003058672},"labels":[],"label_agreement":null},{"id":"W3096661578","doi":"10.1002/path.5577","title":"Generative models in pathology: synthesis of diagnostic quality pathology images<sup>†</sup>","year":2020,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"AI in cancer detection","field":"Computer Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Generative grammar; Deep learning; Artificial intelligence; Generative model; Computer science; Field (mathematics); Confidentiality; Quality (philosophy); Pathology; Medicine","score_opus":0.04101185343288608,"score_gpt":0.2866458827667333,"score_spread":0.24563402933384723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096661578","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0023639142,0.011174607,0.043684773,0.8985638,0.024594186,0.000038593924,0.00014648022,0.0005796887,0.01885386],"genre_scores_gemma":[0.15034023,0.021810336,0.062319987,0.5760143,0.11993753,0.0004313795,0.0003934781,0.0010747521,0.06767803],"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9988257,0.0005612382,0.00008138908,0.000113445756,0.00034792884,0.00007024828],"domain_scores_gemma":[0.98686314,0.010768298,0.0003915037,0.0007369748,0.0008329417,0.0004071668],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003161355,0.00048161164,0.00051719876,0.00057878945,0.0008445253,0.0019438539,0.0011487165,0.011051144,0.007347871],"category_scores_gemma":[0.019404126,0.0004564451,0.0006684904,0.00036344418,0.0027785893,0.0017516462,0.0011114221,0.011077488,0.008282182],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020288346,0.000035489225,0.0013003283,0.00017034651,0.000039061913,0.0053291423,0.00028145532,0.0023085817,0.0013944402,0.04957078,0.79834336,0.14102425],"study_design_scores_gemma":[0.000095710624,0.00010752336,0.000666935,0.00022920144,0.000026087342,0.0143159395,0.00018488968,0.016579293,0.0024340579,0.16131423,0.8039761,0.00007002526],"about_ca_topic_score_codex":0.0007423709,"about_ca_topic_score_gemma":0.001739265,"teacher_disagreement_score":0.011051144,"about_ca_system_score_codex":0.0018289352,"about_ca_system_score_gemma":0.0005186524,"threshold_uncertainty_score":0.024581134},"labels":[],"label_agreement":null},{"id":"W3097509252","doi":"10.1002/path.5575","title":"Whole‐slide laser microdissection for tumour enrichment","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Genome British Columbia; Canada Foundation for Innovation; Genome Canada","keywords":"Laser capture microdissection; Microdissection; Laser; Computer science; Biology; Optics; Physics; Genetics; Gene expression","score_opus":0.012560228756649479,"score_gpt":0.25116320660672703,"score_spread":0.23860297785007756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097509252","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12473481,0.0033384692,0.8444226,0.00053684483,0.000460759,0.00091814424,0.0050528576,0.0069736945,0.013561835],"genre_scores_gemma":[0.28287864,0.003077434,0.67777693,0.00060974876,0.0001614137,0.001717859,0.006396377,0.0010066378,0.026374899],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994017,0.0000589327,0.00003162356,0.0002119368,0.00022533805,0.00007053119],"domain_scores_gemma":[0.9996513,0.0001413293,0.000041715954,0.00009697307,0.000045053897,0.00002357057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004384577,0.00052043464,0.00039431296,0.00071618735,0.00051436573,0.0005504628,0.0008287363,0.00051274715,0.006273335],"category_scores_gemma":[0.00039793152,0.00033930954,0.00044793263,0.00048311858,0.0003627372,0.00027126036,0.00063297944,0.0008375978,0.005554759],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022620781,0.000013854828,0.00021454225,0.00006218062,0.0000124274675,0.000036085046,0.000036813155,0.0002258456,0.9849186,0.0003395552,0.00077309785,0.013344368],"study_design_scores_gemma":[0.000013833736,0.00011656115,0.005453463,0.000011692615,0.000020995987,0.0004218573,0.000027065878,0.007441248,0.9533936,0.00047874002,0.032592203,0.000028726154],"about_ca_topic_score_codex":0.0013022443,"about_ca_topic_score_gemma":0.0038396334,"teacher_disagreement_score":0.006273335,"about_ca_system_score_codex":0.0003117417,"about_ca_system_score_gemma":0.00053801,"threshold_uncertainty_score":0.020986378},"labels":[],"label_agreement":null},{"id":"W3116527571","doi":"10.1002/path.5605","title":"The dysregulation of metabolic pathways and induction of the pentose phosphate pathway in renal ischaemia–reperfusion injury","year":2020,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Biomedical Research and Pathophysiology","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek; ZonMw; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Pentose phosphate pathway; Ischemia; Phosphate; Glycolysis; Chemistry; Biochemistry; Medicine; Metabolism; Internal medicine","score_opus":0.027752033947387067,"score_gpt":0.28277938038530936,"score_spread":0.2550273464379223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3116527571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9664561,0.017926257,0.011893486,0.0004566118,0.0000860765,0.000062165884,0.0016131258,0.00011722143,0.001388946],"genre_scores_gemma":[0.97965485,0.010120511,0.006164391,0.00031719933,0.00004666805,0.00009041939,0.0018423798,0.000021111044,0.0017424447],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99971455,0.00004847603,0.000026798978,0.000076453645,0.00007356177,0.000060169667],"domain_scores_gemma":[0.9997656,0.000027121072,0.00010485868,0.00002226145,0.000037256606,0.00004283786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040939436,0.00042399572,0.000517634,0.0007197761,0.0003265058,0.0005929009,0.00016676707,0.00040382132,0.00086406176],"category_scores_gemma":[0.00027657027,0.00019411521,0.0005021503,0.0007187425,0.00037588895,0.00042331583,0.00052847184,0.000673512,0.000296414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007737276,0.00003744106,0.005458811,0.00036302808,0.00007331233,0.0003117163,0.000065039145,0.00024420882,0.98631847,0.00017582237,0.00008977755,0.0060885097],"study_design_scores_gemma":[0.000028578457,0.0009985613,0.47264794,0.00010654295,0.00024237008,0.0020003181,0.0002970454,0.0019006572,0.5139303,0.001693971,0.0060672523,0.00008646299],"about_ca_topic_score_codex":0.00059747486,"about_ca_topic_score_gemma":0.0006034767,"teacher_disagreement_score":0.00086406176,"about_ca_system_score_codex":0.00029908124,"about_ca_system_score_gemma":0.0004058447,"threshold_uncertainty_score":0.0028905869},"labels":[],"label_agreement":null},{"id":"W3116632939","doi":"10.1002/path.5607","title":"Effects of cigarette smoking on <scp>SARS‐CoV</scp>‐2 receptor <scp>ACE2</scp> expression in the respiratory epithelium<sup>†</sup>","year":2020,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"COVID-19 Clinical Research Studies","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Respiratory epithelium; Receptor; Lung; Pandemic; Respiratory system; Medicine; Pathological; Epithelium; Immunology; Coronavirus disease 2019 (COVID-19); Cigarette smoke; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Pathology; Internal medicine; Disease; Environmental health","score_opus":0.05030538138533088,"score_gpt":0.3630378724382466,"score_spread":0.31273249105291573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3116632939","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17702939,0.53895646,0.0023361784,0.17833535,0.07437749,0.00022727273,0.0030300228,0.00014679821,0.02556115],"genre_scores_gemma":[0.36384806,0.45225942,0.0013813192,0.08678294,0.060204208,0.00026378405,0.001427188,0.000120616285,0.03371239],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927264,0.00027510346,0.00006133028,0.00011518833,0.00021167715,0.00006407198],"domain_scores_gemma":[0.9983742,0.00085120107,0.00015215941,0.000061042534,0.0004564919,0.000104813356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013812411,0.00023856015,0.00040117957,0.0002445637,0.00024067154,0.0007507342,0.00043453134,0.0011577747,0.0017986678],"category_scores_gemma":[0.0027437157,0.000092203176,0.00053224986,0.00021273678,0.00037420672,0.00032996867,0.000237025,0.0012134531,0.00069645094],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009788521,0.00048254416,0.041289132,0.012357534,0.0015773178,0.0035196666,0.0011301037,0.00037603037,0.04547631,0.0046583405,0.4151623,0.4641822],"study_design_scores_gemma":[0.00039246317,0.0038940737,0.21935862,0.003474727,0.0027602399,0.0040519075,0.0008199884,0.0008409004,0.025548784,0.0037712215,0.7349509,0.00013624769],"about_ca_topic_score_codex":0.0015816371,"about_ca_topic_score_gemma":0.0032322633,"teacher_disagreement_score":0.0017986678,"about_ca_system_score_codex":0.00036070918,"about_ca_system_score_gemma":0.0007696083,"threshold_uncertainty_score":0.0073048472},"labels":[],"label_agreement":null},{"id":"W3117435941","doi":"10.1002/path.5608","title":"Endometrial carcinoma: molecular subtypes, precursors and the role of pathology in early diagnosis","year":2020,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Endometrial and Cervical Cancer Treatments","field":"Medicine","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"","keywords":"Pathology; Carcinoma; Medicine; Molecular pathology; Biology; Gene","score_opus":0.026858238630888227,"score_gpt":0.3061522491204166,"score_spread":0.2792940104895284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3117435941","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00005991673,0.999131,0.00005340847,0.00024557984,0.00011150086,0.0000019147603,0.0000079761685,0.000002958972,0.0003856758],"genre_scores_gemma":[0.00043465078,0.9990727,0.00010900697,0.000119914424,0.000097277145,0.0000028109553,0.0000140375905,7.841629e-7,0.00014876954],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997358,0.00006656315,0.000050773786,0.00003718085,0.00008853087,0.000021143773],"domain_scores_gemma":[0.99939024,0.00038362527,0.00006521713,0.000014246774,0.00012011727,0.000026640375],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007876982,0.00063170714,0.0012677677,0.0024290448,0.0002539241,0.0010060171,0.00061174977,0.0009252359,0.0025649348],"category_scores_gemma":[0.0015995175,0.0002407312,0.0005212069,0.0017036808,0.0005218153,0.0011645167,0.000619458,0.0015470086,0.0012592269],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006222208,0.000026615773,0.00028356523,0.020717029,0.0000990338,0.00026813845,0.00007500364,0.00028883672,0.0005764915,0.0029155882,0.020583099,0.9541044],"study_design_scores_gemma":[0.000015434864,0.000086703745,0.0014574508,0.013630083,0.00020647011,0.0030554608,0.00010267908,0.000089072935,0.0002503729,0.0023230468,0.97876215,0.000021091404],"about_ca_topic_score_codex":0.0014322958,"about_ca_topic_score_gemma":0.0026256272,"teacher_disagreement_score":0.0025649348,"about_ca_system_score_codex":0.00069309067,"about_ca_system_score_gemma":0.0011757733,"threshold_uncertainty_score":0.008580565},"labels":[],"label_agreement":null},{"id":"W3148838500","doi":"10.1002/path.5675","title":"Modelling hereditary diffuse gastric cancer initiation using transgenic mouse‐derived gastric organoids and single‐cell sequencing","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Wnt/β-catenin signaling in development and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Willow Breast and Hereditary Cancer Support; BC Cancer Agency; Centre for Advancing Health Outcomes; Vancouver Coastal Health; University of British Columbia","funders":"Health Research Council of New Zealand; Canadian Institutes of Health Research","keywords":"CDH1; Biology; Cancer; Cancer research; Cadherin; Gene; Genetics; Cell","score_opus":0.034388871038404295,"score_gpt":0.24397699782051743,"score_spread":0.20958812678211314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3148838500","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88380754,0.0010994604,0.10562037,0.0001437301,0.00009431968,0.0005033211,0.0036622772,0.0009803716,0.0040886425],"genre_scores_gemma":[0.89578307,0.0016396365,0.09122495,0.00007054346,0.000010148318,0.00082973554,0.0033457356,0.00044279118,0.006653425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99971396,0.000045510384,0.000029996361,0.00007845901,0.00009248919,0.000039522838],"domain_scores_gemma":[0.9995067,0.00018348357,0.000120089,0.00008005842,0.00004117306,0.00006835401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006594572,0.0005560674,0.00043058788,0.0007712194,0.00026787072,0.0005839245,0.000730667,0.0008033476,0.0018653965],"category_scores_gemma":[0.00037974914,0.0005056961,0.0005313359,0.000412474,0.0005748692,0.00024343353,0.00063496275,0.0012152664,0.0006204321],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009514201,0.000036946527,0.00047649446,0.000058809255,0.000011447772,0.00012218609,0.00007560106,0.005346263,0.99147886,0.00088629476,0.000054518037,0.0013574848],"study_design_scores_gemma":[0.00008312805,0.00045510055,0.0031910609,0.000026984226,0.00007283046,0.00044142682,0.000109761895,0.043075453,0.9436872,0.00051281764,0.008305306,0.000038973558],"about_ca_topic_score_codex":0.0026534204,"about_ca_topic_score_gemma":0.0037960873,"teacher_disagreement_score":0.0026534204,"about_ca_system_score_codex":0.00089003966,"about_ca_system_score_gemma":0.000457866,"threshold_uncertainty_score":0.006457746},"labels":[],"label_agreement":null},{"id":"W3149863480","doi":"10.1002/path.5674","title":"Combination of human tau and islet amyloid polypeptide exacerbates metabolic dysfunction in transgenic mice","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatic function and diabetes","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; Occupational Cancer Research Centre; University of Toronto","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Canadian Institutes of Health Research; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Diabetes Canada; Weston Brain Institute","keywords":"Islet; Genetically modified mouse; Amyloid (mycology); Transgene; Endocrinology; Biology; Internal medicine; Neuroscience; Medicine; Diabetes mellitus; Pathology; Biochemistry; Gene","score_opus":0.016145464441763888,"score_gpt":0.26535345461126814,"score_spread":0.24920799016950423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3149863480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99222046,0.0012251233,0.0016333257,0.00033565998,0.00007788665,0.00006784155,0.0009047948,0.00046800048,0.003066927],"genre_scores_gemma":[0.9835728,0.0021944337,0.0038033247,0.0003756092,0.000106159954,0.00019928982,0.001584467,0.00028133334,0.007882616],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941015,0.00010345446,0.000057563786,0.00015198659,0.00013994385,0.00013682636],"domain_scores_gemma":[0.9993401,0.000079851256,0.00024803227,0.00005234197,0.00002250762,0.00025716415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042572748,0.0013033076,0.00069635536,0.001751427,0.0004569327,0.000945197,0.0005845546,0.0011354272,0.0036401676],"category_scores_gemma":[0.00028241883,0.00077181164,0.00071680977,0.00071758346,0.0006597825,0.00056938775,0.00070829573,0.0017487828,0.0010071353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001561073,0.00064102333,0.0007088036,0.00007649287,0.000046494093,0.00062048313,0.000089648776,0.00019652858,0.9931757,0.00031971734,0.00027655513,0.0022874263],"study_design_scores_gemma":[0.0018023073,0.014059971,0.05530208,0.00031977205,0.000612994,0.008546852,0.00054540863,0.009442303,0.8880166,0.0021249258,0.019083653,0.0001430712],"about_ca_topic_score_codex":0.0008048445,"about_ca_topic_score_gemma":0.0015820655,"teacher_disagreement_score":0.0036401676,"about_ca_system_score_codex":0.00067924254,"about_ca_system_score_gemma":0.00037324993,"threshold_uncertainty_score":0.012177587},"labels":[],"label_agreement":null},{"id":"W3162736988","doi":"10.1002/path.5705","title":"<scp>SMARCA4</scp> ‐deficient rhabdoid tumours show intermediate molecular features between <scp>SMARCB1</scp> ‐deficient rhabdoid tumours and small cell carcinomas of the ovary, hypercalcaemic type","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"B.C. Women's Hospital & Health Centre; BC Children's Hospital; Children's & Women's Health Centre of British Columbia","funders":"Institut National Du Cancer; Agence Nationale de la Recherche","keywords":"SMARCA4; SMARCB1; Biology; DNA methylation; Cancer research; Epigenetics; Pathology; Medicine; Genetics; Gene; Gene expression","score_opus":0.01133376197308802,"score_gpt":0.23016371009455555,"score_spread":0.21882994812146753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3162736988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99669147,0.00046286773,0.00093356264,0.000033582062,0.000003958502,0.000021228514,0.00021539086,0.000050238905,0.001587705],"genre_scores_gemma":[0.9980165,0.00012308153,0.001062201,0.00001203939,0.000003712188,0.0000128360825,0.00030294183,0.000007938775,0.00045890122],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99976987,0.000024733057,0.00003778116,0.000054263204,0.000057523634,0.000055782533],"domain_scores_gemma":[0.99956936,0.00008836221,0.00017965274,0.000048295322,0.000043629145,0.00007073225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023487836,0.00029860597,0.0001718425,0.0011095749,0.00019893561,0.0003997291,0.00019306493,0.0003629067,0.0023407491],"category_scores_gemma":[0.00042977286,0.00017092623,0.00021697745,0.0003353955,0.0005193019,0.00022269816,0.0003276577,0.00026078348,0.0004506172],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052185444,0.0000297436,0.12322551,0.00016165803,0.00007618429,0.012557858,0.00019812555,0.00023976968,0.85385543,0.00033831812,0.00016166436,0.008633877],"study_design_scores_gemma":[0.00004540475,0.00037696268,0.7092952,0.000025832831,0.00012909791,0.09632135,0.0005445867,0.0012941156,0.18575464,0.0006338141,0.0055555366,0.0000233896],"about_ca_topic_score_codex":0.00061111775,"about_ca_topic_score_gemma":0.0010511852,"teacher_disagreement_score":0.0023407491,"about_ca_system_score_codex":0.00025072022,"about_ca_system_score_gemma":0.00014702829,"threshold_uncertainty_score":0.00783062},"labels":[],"label_agreement":null},{"id":"W3175027186","doi":"10.1002/path.5749","title":"The molecular landscape of well differentiated retroperitoneal liposarcoma","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; National Institute for Health and Care Research; Medical Research Council Canada; Cancer Research UK; Wellcome Trust","keywords":"Biology; Liposarcoma; Cancer research; Gene; Exon; Chromosome; Wnt signaling pathway; Genetics; Medicine; Pathology; Sarcoma","score_opus":0.012011439164979794,"score_gpt":0.2608288417060419,"score_spread":0.24881740254106213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175027186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881392,0.0067324466,0.0017662576,0.00041704794,0.0000101896685,0.000018269913,0.00025672914,0.00003843345,0.0026213424],"genre_scores_gemma":[0.994819,0.002692837,0.0012621447,0.00009355829,0.00001444705,0.00001226339,0.0002519128,0.000008366096,0.00084540405],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99986506,0.000028962511,0.0000107152,0.000030738425,0.000042201173,0.000022250506],"domain_scores_gemma":[0.9998869,0.000025603991,0.000052962372,0.0000062961794,0.000011436473,0.000016904078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022030872,0.00015939084,0.00013915492,0.0007734303,0.00012503586,0.00041804186,0.00016098791,0.00027641052,0.0014382653],"category_scores_gemma":[0.00034721819,0.00016800464,0.00011170154,0.00033447272,0.0003669362,0.00035094746,0.0003126495,0.00020970826,0.00032213939],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075694796,0.000048906757,0.15952165,0.00046403648,0.00008699469,0.015213432,0.0006471562,0.001722242,0.7539974,0.0030971854,0.0007032744,0.063740715],"study_design_scores_gemma":[0.0000722347,0.0008452832,0.74718136,0.00020360449,0.00027163592,0.10538831,0.001844023,0.0037441722,0.09806583,0.009495218,0.03281282,0.00007546792],"about_ca_topic_score_codex":0.0002813514,"about_ca_topic_score_gemma":0.00041858057,"teacher_disagreement_score":0.0014382653,"about_ca_system_score_codex":0.00026099017,"about_ca_system_score_gemma":0.00013380121,"threshold_uncertainty_score":0.0048114657},"labels":[],"label_agreement":null},{"id":"W3184994968","doi":"10.1002/path.5769","title":"A multi‐ethnic analysis of immune‐related gene expression signatures in patients with ovarian clear cell carcinoma","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Sierra Oncology; National Medical Research Council; National Research Foundation Singapore; National Research Foundation; NuCana; AstraZeneca; National University Cancer Institute, Singapore; Pfizer","keywords":"Immune system; Ethnic group; Clear cell carcinoma; Medicine; Oncology; Ovarian cancer; Internal medicine; Cancer; Immunology; Political science","score_opus":0.011684659928721777,"score_gpt":0.25448387155565977,"score_spread":0.242799211626938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3184994968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99954957,0.00010976185,0.000039603336,0.000010971606,0.0000018344559,0.0000023550097,0.000115290924,0.0000010260114,0.00016951356],"genre_scores_gemma":[0.99967825,0.000042545307,0.000042594067,0.000013001202,0.0000031967218,0.0000040250575,0.0001356851,0.0000013968188,0.00007930323],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998067,0.00004595784,0.000028306027,0.00005480092,0.000033695218,0.000030530144],"domain_scores_gemma":[0.9996556,0.00008746816,0.00011787359,0.000033577377,0.000047464997,0.000058050326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025173582,0.00010898896,0.0002575105,0.00073756947,0.00027522977,0.00032518833,0.00012769755,0.00021610018,0.0008881853],"category_scores_gemma":[0.0006739406,0.00010752045,0.0002015123,0.00068671047,0.00017219203,0.00020523806,0.00030765185,0.00016952533,0.00015786017],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016951871,0.000012000066,0.99613035,0.000007292936,0.000041663676,0.00011087176,0.000068555804,0.000027501268,0.0017428285,0.000008026509,0.0000382408,0.0016432026],"study_design_scores_gemma":[0.000002872188,0.000041656058,0.9989531,0.0000018098846,0.000019296232,0.00036331033,0.00019187898,0.00011299569,0.00016696748,0.000014438804,0.00012979022,0.0000019568045],"about_ca_topic_score_codex":0.0012011942,"about_ca_topic_score_gemma":0.0016912814,"teacher_disagreement_score":0.0012011942,"about_ca_system_score_codex":0.0001204649,"about_ca_system_score_gemma":0.00014651928,"threshold_uncertainty_score":0.0029712915},"labels":[],"label_agreement":null},{"id":"W3189911886","doi":"10.1002/path.5771","title":"<scp><i>FOXL2</i></scp> in adult‐type granulosa cell tumour of the ovary: oncogene or tumour suppressor gene?","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Sigrid Juséliuksen Säätiö","keywords":"Blepharophimosis; Biology; Haploinsufficiency; Mutation; Suppressor; Context (archaeology); Somatic cell; Cancer research; Allele; Genetics; Gene; Germline mutation; Phenotype; Ptosis","score_opus":0.012511922931885492,"score_gpt":0.2530656676917609,"score_spread":0.24055374475987543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3189911886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99381155,0.0017496202,0.0010677088,0.0004255788,0.00003760578,0.000020449826,0.00076194195,0.000110531,0.0020151222],"genre_scores_gemma":[0.996775,0.00053588615,0.00074109907,0.00024186322,0.000019052846,0.000012377711,0.00067200314,0.000026854399,0.0009759095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999907,0.0000071126246,0.000008297455,0.000026368252,0.000032049928,0.000019031866],"domain_scores_gemma":[0.9999211,0.000008918301,0.000029945892,0.000008194054,0.000007381942,0.000024500025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011646134,0.00012696529,0.0001784977,0.00023283617,0.00013315564,0.0002782585,0.0001298399,0.0004995041,0.0014403736],"category_scores_gemma":[0.00013675817,0.0000715499,0.000202088,0.000222616,0.00033172645,0.0001110214,0.000119357836,0.00026820577,0.0004282319],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060571864,0.000044943332,0.031451464,0.00023032534,0.00006653796,0.01599979,0.00010825379,0.00022267636,0.9352697,0.00040035884,0.0015030899,0.014097188],"study_design_scores_gemma":[0.00018325647,0.00057812576,0.39686063,0.000087796274,0.0002459632,0.12477286,0.00039972417,0.0045726774,0.43612456,0.0013346917,0.034798186,0.000041557145],"about_ca_topic_score_codex":0.00069487013,"about_ca_topic_score_gemma":0.0009243314,"teacher_disagreement_score":0.0014403736,"about_ca_system_score_codex":0.00021760647,"about_ca_system_score_gemma":0.00011210542,"threshold_uncertainty_score":0.0048185587},"labels":[],"label_agreement":null},{"id":"W3189996993","doi":"10.1002/path.5773","title":"Weakly supervised learning on unannotated H&amp;E‐stained slides predicts <scp><i>BRAF</i></scp> mutation in thyroid cancer with high accuracy","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"AI in cancer detection","field":"Computer Science","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Nvidia","keywords":"Malignancy; Cancer; Computational biology; Artificial intelligence; Mutation; Biology; Pathology; Oncology; Computer science; Medicine; Bioinformatics; Internal medicine; Gene; Genetics","score_opus":0.015523136684348647,"score_gpt":0.2590707925333516,"score_spread":0.24354765584900293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3189996993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9588462,0.00017013768,0.039428048,0.00013404147,0.000017418837,0.000034377586,0.00034229277,0.00033827106,0.0006893033],"genre_scores_gemma":[0.98893785,0.000057749447,0.009656371,0.000050400668,0.000017772694,0.000028758435,0.00077814533,0.000018637065,0.00045430128],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99950683,0.00017559211,0.00004074107,0.00015567032,0.000081678394,0.000039431117],"domain_scores_gemma":[0.9974353,0.0016006723,0.00030590664,0.00023219053,0.00032857008,0.00009741901],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014453593,0.00052728713,0.00044525534,0.00065143086,0.00019363016,0.0005153561,0.0005002698,0.00048656325,0.00068268826],"category_scores_gemma":[0.005315323,0.0002254185,0.00048276092,0.0002301277,0.00036121262,0.00046744052,0.00052959105,0.0004867015,0.00032421478],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016769165,0.00050385034,0.57657075,0.0001807386,0.00043155995,0.00057487213,0.00019571988,0.17373869,0.054588955,0.00047942484,0.003598153,0.18746033],"study_design_scores_gemma":[0.00003056649,0.0001947021,0.071189426,0.000013598938,0.00006140348,0.00020299309,0.000048190173,0.9151328,0.011512769,0.0012353696,0.00035739344,0.000020742984],"about_ca_topic_score_codex":0.0028531053,"about_ca_topic_score_gemma":0.0056041316,"teacher_disagreement_score":0.0028531053,"about_ca_system_score_codex":0.0004167493,"about_ca_system_score_gemma":0.0004061425,"threshold_uncertainty_score":0.0076438785},"labels":[],"label_agreement":null},{"id":"W3200356700","doi":"10.1002/path.5797","title":"The utility of color normalization for <scp>AI</scp>‐based diagnosis of hematoxylin and eosin‐stained pathology images","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"AI in cancer detection","field":"Computer Science","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; BC Cancer Agency; Vancouver General Hospital; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Normalization (sociology); Digital pathology; Artificial intelligence; Computer science; H&E stain; Pattern recognition (psychology); Color normalization; Benchmarking; Pathology; Medicine; Image processing; Color image; Staining","score_opus":0.015448240296665972,"score_gpt":0.2742874523250281,"score_spread":0.25883921202836213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3200356700","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.45800883,0.0025875145,0.5232769,0.0010713679,0.00028803264,0.0003782898,0.000619636,0.0075171096,0.006252372],"genre_scores_gemma":[0.6410162,0.00056477427,0.35554835,0.00032523688,0.000064130465,0.000122846,0.00075499224,0.0005398329,0.00106371],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99694973,0.0011569015,0.00018166944,0.00069443515,0.0008683031,0.00014897263],"domain_scores_gemma":[0.9939786,0.0020214966,0.00078304834,0.0009924511,0.0020453273,0.00017913806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0077595306,0.0011810068,0.0007429318,0.0022653393,0.0006025186,0.002368552,0.001071717,0.00082305353,0.001017885],"category_scores_gemma":[0.01359962,0.0003256435,0.00094947533,0.0012128194,0.0010484947,0.001457721,0.0010732342,0.0011512493,0.00069465133],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010238909,0.0003318908,0.056195136,0.0005278597,0.0005486313,0.00012941472,0.00022362392,0.04374968,0.26514986,0.0019155269,0.0042882618,0.62591624],"study_design_scores_gemma":[0.00005056624,0.0005356537,0.06753055,0.00008815092,0.00033787574,0.0006334841,0.00018929898,0.48776183,0.43333158,0.003083315,0.00631533,0.0001423063],"about_ca_topic_score_codex":0.0028868155,"about_ca_topic_score_gemma":0.0037724266,"teacher_disagreement_score":0.0077595306,"about_ca_system_score_codex":0.0011835728,"about_ca_system_score_gemma":0.0009696443,"threshold_uncertainty_score":0.041036785},"labels":[],"label_agreement":null},{"id":"W3202053570","doi":"10.1002/path.5809","title":"Untangling the complexities of micropapillary cancer<sup>†</sup>","year":2021,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; Cancer Research UK; Medical Research Council; Department of Education and Learning, Northern Ireland; AstraZeneca","keywords":"Multicellular organism; Colorectal cancer; Cancer; Biology; Polarity (international relations); Morphology (biology); Phenotype; Pathology; Cancer research; Cell biology; Medicine; Cell; Gene; Genetics","score_opus":0.046939583219809955,"score_gpt":0.2942374996116166,"score_spread":0.24729791639180665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202053570","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008431121,0.011540077,0.0011801069,0.92703265,0.04289764,0.00002339412,0.000088419256,0.00013553411,0.008671193],"genre_scores_gemma":[0.08111684,0.019990988,0.0025618833,0.58767736,0.27502573,0.00008047884,0.00020009105,0.0001102677,0.03323642],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994808,0.00013709597,0.00009149385,0.00008959987,0.0001409249,0.000060058203],"domain_scores_gemma":[0.9981559,0.00091109396,0.00014582173,0.00011988404,0.00040497308,0.000262352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008129122,0.00034669938,0.0004394649,0.0003413471,0.00088400557,0.001432982,0.0005385633,0.007491762,0.0027131967],"category_scores_gemma":[0.0038168482,0.00030891478,0.00040230074,0.00021603261,0.0013443993,0.0012196567,0.0004337673,0.008496885,0.0035968956],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003296435,0.00007343916,0.00541836,0.00034312086,0.000032146956,0.028693473,0.0003159377,0.00023276475,0.005452645,0.005622137,0.8593085,0.09417789],"study_design_scores_gemma":[0.00007119507,0.0001640185,0.0053390097,0.00014312538,0.00003341954,0.034933046,0.00039794814,0.0009322983,0.0024126582,0.008598977,0.94693273,0.000041604937],"about_ca_topic_score_codex":0.0004227869,"about_ca_topic_score_gemma":0.0011260594,"teacher_disagreement_score":0.007491762,"about_ca_system_score_codex":0.0008671266,"about_ca_system_score_gemma":0.00044282444,"threshold_uncertainty_score":0.009076595},"labels":[],"label_agreement":null},{"id":"W3202170491","doi":"10.1002/path.5812","title":"Homozygous <scp><i>WASHC4</i></scp> variant in two sisters causes a syndromic phenotype defined by dysmorphisms, intellectual disability, profound developmental disorder, and skeletal muscle involvement","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Children's Hospital of Eastern Ontario; University of Ottawa","funders":"National Eye Institute; Leibniz-Gemeinschaft; European Research Council; Medical Research Council; Canadian Institutes of Health Research; Lily Foundation; Evelyn Trust; Bundesministerium für Bildung und Forschung; Canada Research Chairs; Ataxia UK; Muscular Dystrophy Canada; Muscular Dystrophy Association; Canada Foundation for Innovation; Newton Fund; European Regional Development Fund; Broad Institute; French Muscular Dystrophy Association; National Human Genome Research Institute; Ministerium für Kultur und Wissenschaft des Landes Nordrhein-Westfalen; Wellcome Trust; University of Kentucky","keywords":"Skeletal muscle; Phenotype; Muscle biopsy; Zebrafish; Actin; Biology; Actinin; Gene knockdown; Pathology; Desmin; Bioinformatics; Cell biology; Genetics; Biopsy; Medicine; Gene; Immunohistochemistry; Endocrinology; Cytoskeleton","score_opus":0.010622482325903454,"score_gpt":0.2540828076460677,"score_spread":0.24346032532016426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202170491","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908467,0.00060320756,0.0031550794,0.00074744853,0.00025811626,0.00015496217,0.0008902222,0.00017588711,0.0031684372],"genre_scores_gemma":[0.9911384,0.0003982006,0.0027133229,0.00045921377,0.00013813263,0.00006257902,0.0006399382,0.00011504007,0.004335185],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9990274,0.00007993261,0.000112724665,0.00036564574,0.00027018014,0.00014401227],"domain_scores_gemma":[0.99905115,0.00021611071,0.00021573472,0.000077961995,0.00008833325,0.00035072982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033953623,0.0021867226,0.0007568323,0.0016682898,0.0010799731,0.0006551235,0.0011026075,0.003125441,0.004221962],"category_scores_gemma":[0.001491381,0.00065996393,0.0010725504,0.00057973654,0.0015131494,0.00048002577,0.0018162946,0.0020615542,0.0011965141],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002676633,0.00019481966,0.023297014,0.00014067425,0.00012825552,0.8826517,0.0012166903,0.00016753361,0.08195658,0.00079344184,0.0017362812,0.0074493904],"study_design_scores_gemma":[0.000044287604,0.00033164272,0.03876017,0.0000487199,0.000081673774,0.9378979,0.0004170812,0.0005322215,0.01717824,0.00035259372,0.004294939,0.000060465314],"about_ca_topic_score_codex":0.00269967,"about_ca_topic_score_gemma":0.002483258,"teacher_disagreement_score":0.004221962,"about_ca_system_score_codex":0.0005911593,"about_ca_system_score_gemma":0.0005206373,"threshold_uncertainty_score":0.014123917},"labels":[],"label_agreement":null},{"id":"W3211847376","doi":"10.1002/path.5833","title":"Elucidating the role of the kinase activity of endothelial cell focal adhesion kinase in angiocrine signalling and tumour growth","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Angiogenesis and VEGF in Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Medical Research Council Canada; British Heart Foundation; Cancer Research UK; Barts Charity","keywords":"Focal adhesion; Doxorubicin; Cancer research; Kinase; Cell growth; Medicine; Biology; Pathology; Signal transduction; Cell biology; Chemotherapy; Internal medicine; Biochemistry","score_opus":0.008654762831589292,"score_gpt":0.23496161975418484,"score_spread":0.22630685692259556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3211847376","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9423039,0.045377977,0.0083872,0.0007570201,0.00004674035,0.000033585675,0.0001749873,0.000036209196,0.0028823097],"genre_scores_gemma":[0.9806816,0.0148256235,0.0023742714,0.00011591221,0.00003249919,0.000019726987,0.00011065558,0.0000049097703,0.0018348215],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999943,0.000011743229,0.0000041631433,0.0000113612905,0.0000129536975,0.00001665567],"domain_scores_gemma":[0.99993587,0.000017134673,0.000021795835,0.000006157743,0.0000084521735,0.000010539788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001596718,0.00019280499,0.00013636556,0.00015231526,0.00009033146,0.0003034281,0.00014384037,0.00021669091,0.00066788105],"category_scores_gemma":[0.000109293585,0.000092752045,0.00011881505,0.00009806536,0.00022402257,0.00040204404,0.000115781586,0.00063550915,0.00014548906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011132705,0.000042667656,0.0005833874,0.00013819798,0.000005332722,0.000063938285,0.000016112597,0.00015358107,0.9920993,0.0006045432,0.000045834204,0.0061357664],"study_design_scores_gemma":[0.000030838124,0.00072204764,0.03070412,0.00003721718,0.000044125572,0.0010201682,0.00009293898,0.003512582,0.94901025,0.0009848593,0.013828818,0.00001196491],"about_ca_topic_score_codex":0.000513185,"about_ca_topic_score_gemma":0.0008512707,"teacher_disagreement_score":0.00066788105,"about_ca_system_score_codex":0.00030264372,"about_ca_system_score_gemma":0.00016753464,"threshold_uncertainty_score":0.0022342205},"labels":[],"label_agreement":null},{"id":"W3213931053","doi":"10.1002/path.5836","title":"<scp>SWI</scp>/<scp>SNF</scp>‐deficient undifferentiated malignancies: where to draw the line<sup>†</sup>","year":2021,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Jewish General Hospital","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research","keywords":"SMARCA4; SMARCB1; Phenotype; Biology; Cancer research; Pathological; Pathology; Medicine; Chromatin remodeling; Epigenetics; Gene; Genetics","score_opus":0.015541274923876471,"score_gpt":0.24833302231541393,"score_spread":0.23279174739153746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3213931053","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5328414,0.23409893,0.017364172,0.17094089,0.011530372,0.00033548,0.0021424086,0.0012670002,0.029479368],"genre_scores_gemma":[0.8174558,0.07710312,0.019048858,0.05318815,0.0042990292,0.00018571087,0.0018048474,0.00034831106,0.026566211],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99966514,0.000063394815,0.000052257124,0.00006501868,0.00009748282,0.000056598994],"domain_scores_gemma":[0.99876225,0.0001886303,0.00013484027,0.00009243771,0.00054692564,0.00027482765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001207422,0.00039676236,0.0005686583,0.00083532266,0.00037901098,0.0018850467,0.0006695556,0.0017185074,0.0023915807],"category_scores_gemma":[0.0013546809,0.00027291957,0.00038192616,0.00049166445,0.00094202877,0.0016647031,0.0004914569,0.0024402242,0.002032097],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004779941,0.0004004725,0.12944554,0.0016631273,0.0003863538,0.006124197,0.0009340356,0.00030117773,0.22682685,0.0074899425,0.109886184,0.51176226],"study_design_scores_gemma":[0.000408088,0.0021432382,0.1323602,0.001760567,0.00066557154,0.025913047,0.0060891258,0.0023744353,0.18115528,0.020512275,0.6262974,0.00032078943],"about_ca_topic_score_codex":0.00140333,"about_ca_topic_score_gemma":0.0025277524,"teacher_disagreement_score":0.0023915807,"about_ca_system_score_codex":0.00093605,"about_ca_system_score_gemma":0.00062904926,"threshold_uncertainty_score":0.008000612},"labels":[],"label_agreement":null},{"id":"W3214288468","doi":"10.1002/path.5835","title":"Integrative multi‐omic analysis reveals neurodevelopmental gene dysregulation in <scp><i>CIC</i></scp>‐knockout and <scp><i>IDH1</i></scp>‐mutant cells","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Glioma Diagnosis and Treatment","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"BC Cancer Foundation; University of British Columbia; Canada Research Chairs; Canada Foundation for Innovation; Genome British Columbia; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre; Genome Canada","keywords":"Biology; Mutant; Knockout mouse; IDH1; Gene knockout; Context (archaeology); Transcriptome; Gene; Wild type; Mutation; Cancer research; Genetics; Gene expression","score_opus":0.014881071601638677,"score_gpt":0.26487978652050115,"score_spread":0.24999871491886247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3214288468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96347135,0.0022733347,0.00829416,0.00013034022,0.000042369713,0.000054086875,0.023177342,0.00046447857,0.002092494],"genre_scores_gemma":[0.9428786,0.0017906481,0.014714511,0.00031432457,0.000025585314,0.00019350983,0.035657562,0.00027008186,0.004155064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997515,0.000010439498,0.000013181994,0.00008895645,0.000085422456,0.000050405164],"domain_scores_gemma":[0.9998468,0.000029767223,0.000057712976,0.00002071336,0.000017505074,0.000027483276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018173372,0.00033239252,0.00052133604,0.0010259193,0.00031649575,0.00045606348,0.00024796563,0.00030351838,0.0013865782],"category_scores_gemma":[0.00012649158,0.00016352955,0.0005618554,0.0008765399,0.00024520062,0.00014118056,0.00050414103,0.00051431276,0.00044932743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011946908,0.000013349395,0.0035389117,0.00010731416,0.000044394263,0.00014965213,0.000049392507,0.00016661151,0.99260473,0.000095380215,0.00016434552,0.002946394],"study_design_scores_gemma":[0.00003226708,0.00032341093,0.48695645,0.00004747886,0.0003275573,0.0015066758,0.000398431,0.0065492187,0.48536056,0.00047892402,0.017970612,0.00004840011],"about_ca_topic_score_codex":0.0013053766,"about_ca_topic_score_gemma":0.0028186496,"teacher_disagreement_score":0.0013865782,"about_ca_system_score_codex":0.00026908633,"about_ca_system_score_gemma":0.0003375365,"threshold_uncertainty_score":0.0046385527},"labels":[],"label_agreement":null},{"id":"W3215856594","doi":"10.1002/path.5844","title":"Pancancer cytotoxic <scp>T‐</scp>cell trapping: are neutrophil extracellular traps a viable biomarker for immunotherapy response?<sup><b>†</b></sup>","year":2021,"lang":"en","type":"letter","venue":"The Journal of Pathology","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Neutrophil extracellular traps; Cytotoxic T cell; Multiplex; Immunotherapy; Biomarker; Extracellular; Immunofluorescence; CD8; Biology; Immunology; Molecular biology; Cancer research; Chemistry; Antigen; Antibody; Cell biology; Inflammation; Immune system; Biochemistry; Bioinformatics; In vitro","score_opus":0.028137516708586666,"score_gpt":0.24531398009034072,"score_spread":0.21717646338175406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3215856594","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007181975,0.006894209,0.0008226042,0.9246938,0.047819253,0.000050545765,0.000086172346,0.00012829507,0.012323165],"genre_scores_gemma":[0.08071933,0.011644442,0.0014985454,0.63819855,0.23474725,0.000119660384,0.00011351052,0.00008770702,0.032871008],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99939895,0.00018445888,0.000078849174,0.00008220924,0.00017101358,0.00008456135],"domain_scores_gemma":[0.9972831,0.0013798771,0.0002463699,0.00013301575,0.0006343533,0.00032328212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010240176,0.0005267348,0.00057184906,0.00032168423,0.0008356746,0.0016878037,0.0005295272,0.009762943,0.0032443732],"category_scores_gemma":[0.0066570304,0.00025350612,0.0003709617,0.00021367027,0.0013728818,0.0012052814,0.0002945755,0.008510683,0.0059833666],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037599937,0.00012323506,0.0039395527,0.00025297675,0.00002595982,0.046545804,0.00022160384,0.0001316941,0.0031195679,0.0055182977,0.8792646,0.060480736],"study_design_scores_gemma":[0.0002027715,0.00033367518,0.0043933243,0.00036256787,0.000046664536,0.053764135,0.0006079488,0.0013762015,0.0024883775,0.010634791,0.9257317,0.00005775725],"about_ca_topic_score_codex":0.00060780096,"about_ca_topic_score_gemma":0.0007507374,"teacher_disagreement_score":0.009762943,"about_ca_system_score_codex":0.0011820687,"about_ca_system_score_gemma":0.00050073804,"threshold_uncertainty_score":0.010853529},"labels":[],"label_agreement":null},{"id":"W4200136702","doi":"10.1002/path.5849","title":"Validated biomarker assays confirm that <scp>ARID1A</scp> loss is confounded with <scp>MMR</scp> deficiency, <scp> CD8 <sup>+</sup> TIL </scp> infiltration, and provides no independent prognostic value in endometriosis‐associated ovarian carcinomas","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; University of Calgary; Vancouver General Hospital; University of British Columbia; Calgary Laboratory Services; BC Cancer Agency","funders":"H2020 European Research Council; Medical Research and Materiel Command; Cancer Research UK; National Health and Medical Research Council; Swedish Cancer Foundation; Terry Fox Research Institute; Deutsche Forschungsgemeinschaft; National Cancer Institute; BC Cancer Foundation; Canadian Institutes of Health Research; National Center for Research Resources; Cancer Institute NSW; Michael Smith Health Research BC; Breast Cancer Now","keywords":"ARID1A; CD8; Cancer research; Microsatellite instability; Endometriosis; Biology; Immune system; Oncology; Internal medicine; Medicine; Immunology; Mutation; Gene; Genetics","score_opus":0.01847845810984757,"score_gpt":0.24349473102540567,"score_spread":0.2250162729155581,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200136702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892201,0.0012438734,0.002818099,0.00004436956,0.000012118736,0.00009106283,0.0048244237,0.00004307304,0.0017028815],"genre_scores_gemma":[0.9930172,0.00017029289,0.0029337548,0.00003714953,0.000008521858,0.000104037914,0.0032304588,0.0000091906395,0.00048932066],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987214,0.00023262568,0.000251571,0.00027392077,0.00035301768,0.0001674695],"domain_scores_gemma":[0.9978485,0.00046376762,0.0007134763,0.00028375216,0.00051707175,0.00017339386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018443044,0.0003413152,0.00042928723,0.00168956,0.00044231943,0.0007371602,0.00037919907,0.0003335143,0.0018248309],"category_scores_gemma":[0.0032376123,0.00014944086,0.00036771555,0.0015927228,0.00029720747,0.00033033598,0.0005234862,0.00026978352,0.00059320556],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003209487,0.0000462572,0.9659402,0.00007028998,0.00015610257,0.00009199176,0.00008254924,0.00043651473,0.024433972,0.00011944044,0.00039869297,0.007903089],"study_design_scores_gemma":[0.0000223749,0.00018113173,0.97570884,0.000020532441,0.00012903882,0.00057482,0.00016813069,0.0013096936,0.018047167,0.00024098868,0.0035858254,0.000011501147],"about_ca_topic_score_codex":0.0041608075,"about_ca_topic_score_gemma":0.008106802,"teacher_disagreement_score":0.0041608075,"about_ca_system_score_codex":0.0005383388,"about_ca_system_score_gemma":0.00053322146,"threshold_uncertainty_score":0.009753704},"labels":[],"label_agreement":null},{"id":"W4200553931","doi":"10.1002/path.5847","title":"Activin <scp>B</scp> , a new player in kidney fibrosis? <sup>†</sup>","year":2021,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Institute of Nutrition, Metabolism and Diabetes; Kidney Foundation of Canada","keywords":"Downregulation and upregulation; Fibrosis; Kidney; Kidney disease; Follistatin; Fibroblast; Cancer research; Medicine; Endocrinology; Internal medicine; Biology; Cell culture; Gene; Biochemistry","score_opus":0.008013745008811142,"score_gpt":0.23623454958191997,"score_spread":0.22822080457310884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200553931","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.051129986,0.3946824,0.004686746,0.3972681,0.12403105,0.00004862414,0.0006072065,0.0003035015,0.027242346],"genre_scores_gemma":[0.23066124,0.26537043,0.005181881,0.10936066,0.2580137,0.000069442576,0.0006304996,0.0001992269,0.13051294],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998087,0.00002747044,0.000024381552,0.000037331338,0.00006694899,0.00003504915],"domain_scores_gemma":[0.9994678,0.00014060008,0.00006806864,0.000030235713,0.00012678125,0.00016661997],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006872752,0.0003169659,0.00037969954,0.00038865735,0.00036848054,0.0021941846,0.000457049,0.0017476053,0.0034197678],"category_scores_gemma":[0.0006030854,0.00021231893,0.00024712965,0.0002559342,0.0010933658,0.0014692792,0.0003297721,0.0026211864,0.0017464429],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024991569,0.00016920359,0.007544289,0.002104792,0.00011204492,0.0031203746,0.0003162071,0.00019772004,0.09597715,0.01938564,0.5025461,0.36602736],"study_design_scores_gemma":[0.00007363559,0.00023419988,0.0097303055,0.00018152529,0.00007161135,0.004117924,0.00044244624,0.00072579033,0.020104023,0.008281572,0.95600224,0.000034772045],"about_ca_topic_score_codex":0.0003858092,"about_ca_topic_score_gemma":0.00093770545,"teacher_disagreement_score":0.0034197678,"about_ca_system_score_codex":0.00057806284,"about_ca_system_score_gemma":0.00041564135,"threshold_uncertainty_score":0.0114402175},"labels":[],"label_agreement":null},{"id":"W4205601010","doi":"10.1002/path.5864","title":"Computer‐extracted features of nuclear morphology in hematoxylin and eosin images distinguish <scp>s</scp>tage <scp>II</scp> and <scp>IV</scp> colon tumors","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Radiomics and Machine Learning in Medical Imaging","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; National Center for Research Resources; National Institute of Biomedical Imaging and Bioengineering; National Cancer Institute; National Heart, Lung, and Blood Institute; U.S. Department of Veterans Affairs","keywords":"Colorectal cancer; H&E stain; Artificial intelligence; Stage (stratigraphy); Digital pathology; Medicine; Random forest; Convolutional neural network; Cancer; Pathology; Oncology; Internal medicine; Computer science; Immunohistochemistry; Biology","score_opus":0.007140593702023906,"score_gpt":0.2551362489681132,"score_spread":0.2479956552660893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205601010","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954358,0.00012501428,0.003279061,0.000021648573,0.0000060199905,0.000028350978,0.0005659251,0.000082878,0.00045532503],"genre_scores_gemma":[0.9955487,0.000054332817,0.0028803044,0.00001324736,0.0000055277005,0.000023205845,0.0012114941,0.000009781506,0.00025341957],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996644,0.000076449076,0.000030083394,0.000107466185,0.0000611023,0.000060482544],"domain_scores_gemma":[0.9988187,0.00048194866,0.0002117023,0.00017701602,0.0002111919,0.000099402154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012874074,0.000511743,0.0003759341,0.0010040929,0.00019962784,0.00059631147,0.00032954267,0.0003761673,0.0008537007],"category_scores_gemma":[0.002728703,0.00022265252,0.00048489068,0.0003318723,0.00030215332,0.00035207844,0.00036211076,0.00029607536,0.00037595702],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013325076,0.0002533067,0.8941855,0.00008834795,0.00023362829,0.0002558213,0.00014419938,0.009933341,0.054751445,0.0001200633,0.0009777591,0.037724078],"study_design_scores_gemma":[0.00004587917,0.00057879096,0.89994365,0.000029451177,0.00012249307,0.00067131297,0.000179191,0.07123797,0.026028179,0.00022340805,0.00090769114,0.000031967058],"about_ca_topic_score_codex":0.003920164,"about_ca_topic_score_gemma":0.0074592694,"teacher_disagreement_score":0.003920164,"about_ca_system_score_codex":0.00032743564,"about_ca_system_score_gemma":0.00029019406,"threshold_uncertainty_score":0.007794678},"labels":[],"label_agreement":null},{"id":"W4214674120","doi":"10.1002/path.5889","title":"Cellular context determines <scp>DNA</scp> methylation profiles in <scp>SWI</scp>/<scp>SNF</scp>‐deficient cancers of the gynecologic tract","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Calgary; McGill University; Calgary Laboratory Services; Jewish General Hospital; McGill University Health Centre","funders":"","keywords":"SMARCA4; SMARCB1; Biology; Context (archaeology); DNA methylation; Epigenetics; Cancer research; Methylation; Phenotype; Genetics; Gene; Gene expression; Chromatin remodeling","score_opus":0.014440604450297862,"score_gpt":0.2468399449220041,"score_spread":0.23239934047170624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214674120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987656,0.0002962158,0.00032124436,0.000011080018,0.0000013658913,0.0000022160773,0.00016350792,0.000010901187,0.00042801118],"genre_scores_gemma":[0.99883825,0.00019158432,0.0002958954,0.000010063835,0.0000010963907,0.0000033871106,0.0002753439,0.000004444047,0.00038012353],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99995327,0.000006823273,0.000004411482,0.000015362823,0.000010649842,0.000009527283],"domain_scores_gemma":[0.99995136,0.00001079906,0.000015272544,0.000005144979,0.0000069097964,0.000010512886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005703428,0.00009042039,0.00007644695,0.00025719544,0.00007516122,0.0002060858,0.000056494755,0.00011294871,0.00089198176],"category_scores_gemma":[0.00011061677,0.00007458552,0.000054001615,0.000117778276,0.00014930058,0.00006436943,0.00010537399,0.000099819554,0.00021451987],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010369901,0.0000042977035,0.017095476,0.00001295488,0.0000070679253,0.0000941182,0.00003248323,0.000040946314,0.98084337,0.000041757496,0.000022878992,0.0017009903],"study_design_scores_gemma":[0.0000073920105,0.00016829676,0.61069894,0.000006905992,0.000034948353,0.00163058,0.00025303557,0.0015467046,0.3832858,0.000103839186,0.002257008,0.0000065407635],"about_ca_topic_score_codex":0.0010981116,"about_ca_topic_score_gemma":0.0017937253,"teacher_disagreement_score":0.0010981116,"about_ca_system_score_codex":0.00012382433,"about_ca_system_score_gemma":0.000092105285,"threshold_uncertainty_score":0.0029839873},"labels":[],"label_agreement":null},{"id":"W4214835409","doi":"10.1002/path.5890","title":"Glomerulonephritis and autoimmune vasculitis are independent of <scp>P2RX7</scp> but may depend on alternative inflammasome pathways","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Adenosine and Purinergic Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Medical Research Council Canada; Kidney Research UK; H2020 European Research Council; AstraZeneca","keywords":"Inflammasome; Autoimmunity; NALP3; Immunology; Inflammation; Glomerulonephritis; Proinflammatory cytokine; Pyroptosis; Biology; Immune system; Medicine; Endocrinology; Kidney","score_opus":0.013123229766765577,"score_gpt":0.2275356889939801,"score_spread":0.21441245922721452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214835409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948602,0.0009510845,0.0022373274,0.00017795611,0.000034983204,0.000028595212,0.000398564,0.00009477009,0.0012166128],"genre_scores_gemma":[0.9962049,0.00044012791,0.0011643909,0.00008627569,0.00003730228,0.000044865734,0.00051962445,0.00003097663,0.0014715891],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99956065,0.00007381291,0.00006128421,0.00009295813,0.0001377206,0.00007359978],"domain_scores_gemma":[0.9995466,0.000042057738,0.00019641087,0.00007988329,0.00003715634,0.00009792389],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028915895,0.00060853426,0.0005073246,0.0003909941,0.0001633195,0.0003544306,0.00026277592,0.00047462032,0.0014538628],"category_scores_gemma":[0.00018500017,0.00017734223,0.0004922262,0.00013917613,0.00072296866,0.00038717885,0.00031885016,0.0008933086,0.0004630176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042662452,0.000047800007,0.00072032446,0.00005269873,0.00001845533,0.00041073258,0.000015430127,0.000019367099,0.9973387,0.00016138551,0.000036107776,0.00075245555],"study_design_scores_gemma":[0.00015394657,0.0014185788,0.073117115,0.000034738398,0.000099513556,0.010297784,0.0001579863,0.0008501652,0.90998524,0.0003544246,0.0035078218,0.000022675546],"about_ca_topic_score_codex":0.00022742272,"about_ca_topic_score_gemma":0.00031597447,"teacher_disagreement_score":0.0014538628,"about_ca_system_score_codex":0.00017905887,"about_ca_system_score_gemma":0.00016924736,"threshold_uncertainty_score":0.0048636794},"labels":[],"label_agreement":null},{"id":"W4214892756","doi":"10.1002/path.5891","title":"Genomic catastrophe, the peritoneal cavity and ovarian cancer prevention","year":2022,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University; St. Michael's Hospital","funders":"Brigham and Women's Hospital; National Cancer Institute; Ovarian Cancer Research Alliance; Ovarian Cancer Research Fund; U.S. Department of Defense","keywords":"Peritoneal cavity; Ovarian cancer; Medicine; Biology; Oncology; Cancer; Internal medicine; Surgery","score_opus":0.06471496021455686,"score_gpt":0.3702103346395456,"score_spread":0.30549537442498875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214892756","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24242909,0.6642272,0.008677435,0.04346938,0.0015478872,0.000119035925,0.00058038963,0.00037300063,0.038576655],"genre_scores_gemma":[0.8925877,0.09625719,0.0018298409,0.0033967528,0.000635831,0.00006664776,0.00023649333,0.000027220018,0.004962155],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99982846,0.000074910604,0.000006997558,0.000024062196,0.000027125623,0.00003828129],"domain_scores_gemma":[0.99921286,0.00027525416,0.00023468636,0.00004804674,0.00006387561,0.0001653021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005038079,0.00016321971,0.00025740347,0.00043572008,0.00026874276,0.00073840603,0.0002769077,0.00055527984,0.0036709742],"category_scores_gemma":[0.0021174366,0.000073812094,0.00026094116,0.00019430094,0.0006494642,0.0004651419,0.00067120366,0.0006860076,0.00029098307],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015098505,0.0005195618,0.051878102,0.0046946737,0.0004910385,0.002817203,0.0011382796,0.0045029446,0.020583183,0.07743215,0.06167077,0.7727623],"study_design_scores_gemma":[0.0005670118,0.003680172,0.19573472,0.0037989456,0.0005139088,0.011447973,0.0031967699,0.004339186,0.014642895,0.16391148,0.59802186,0.00014510748],"about_ca_topic_score_codex":0.00067124236,"about_ca_topic_score_gemma":0.0009268757,"teacher_disagreement_score":0.0036709742,"about_ca_system_score_codex":0.00045300214,"about_ca_system_score_gemma":0.0005544701,"threshold_uncertainty_score":0.012280583},"labels":[],"label_agreement":null},{"id":"W4220929666","doi":"10.1002/path.5901","title":"Unravelling the tumour genome: The evolutionary and clinical impacts of structural variants in tumourigenesis","year":2022,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"College of Medicine and Veterinary Medicine, University of Edinburgh; Medical Research Council Canada; Cancer Research UK","keywords":"Computational biology; Tumour heterogeneity; Genome; Biology; Structural variation; Bioinformatics; Evolutionary biology; Cancer; Genetics; Gene","score_opus":0.035175587241183144,"score_gpt":0.3361197731751419,"score_spread":0.3009441859339588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220929666","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6563213,0.19034325,0.11078645,0.020147845,0.0012917606,0.00011730736,0.007830932,0.0008697319,0.012291356],"genre_scores_gemma":[0.9057272,0.040239643,0.04204524,0.0032396272,0.00089754415,0.00007754034,0.0041592205,0.0004054865,0.0032084163],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.999022,0.0002803927,0.0000626865,0.00031119806,0.00023976786,0.0000839962],"domain_scores_gemma":[0.9968934,0.001355385,0.0007287242,0.00031353848,0.00043292705,0.00027601756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021195475,0.00046432606,0.0006310994,0.0014916877,0.00046983114,0.0019209883,0.0005917614,0.0011527258,0.0024340379],"category_scores_gemma":[0.005991244,0.0003103441,0.00055107416,0.0018901305,0.0009175993,0.0018387991,0.0010752461,0.0025004786,0.00073391065],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00095306063,0.00011594622,0.328523,0.003273957,0.0007858399,0.0021048165,0.0019596943,0.006484633,0.20062935,0.019072693,0.013344455,0.42275265],"study_design_scores_gemma":[0.00007072153,0.0006182992,0.5936095,0.0017616283,0.0009391575,0.01278865,0.002039766,0.026397994,0.0512668,0.056694962,0.2535121,0.0003003503],"about_ca_topic_score_codex":0.003269638,"about_ca_topic_score_gemma":0.005854635,"teacher_disagreement_score":0.003269638,"about_ca_system_score_codex":0.00070229056,"about_ca_system_score_gemma":0.000863544,"threshold_uncertainty_score":0.011209369},"labels":[],"label_agreement":null},{"id":"W4221017851","doi":"10.1002/path.5894","title":"Discordant prognosis of mismatch repair deficiency in colorectal and endometrial cancer reflects variation in antitumour immune response and immune escape","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Cancer Research UK; Academy of Medical Sciences; Horizon 2020 Framework Programme; Medical Research Council Canada; ZonMw; Universität Zürich; European Commission; Wellcome Trust; KWF Kankerbestrijding; National Institute for Health and Care Research; Memorial Sloan-Kettering Cancer Center","keywords":"Immune system; Endometrial cancer; Colorectal cancer; Medicine; Cancer; DNA mismatch repair; Oncology; Cancer research; Immunology; Internal medicine","score_opus":0.01724775621482983,"score_gpt":0.2947727580832931,"score_spread":0.2775250018684633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221017851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96304363,0.03289782,0.0013526729,0.00025043348,0.0000873949,0.000033570348,0.0013269894,0.00002481276,0.0009827564],"genre_scores_gemma":[0.9986071,0.00065674086,0.00016242755,0.00008522131,0.000026331312,0.000009889057,0.00034792154,0.000006594263,0.000097876175],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971643,0.0013911917,0.0003333785,0.0006890722,0.0002876104,0.00013430843],"domain_scores_gemma":[0.993682,0.0034530677,0.0013552863,0.0010176768,0.0003258524,0.00016612686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0044803703,0.00026424768,0.0009912428,0.000851087,0.00018674461,0.00067643827,0.00043043666,0.00049498695,0.001150414],"category_scores_gemma":[0.0077536,0.00029424284,0.0020265614,0.0011538645,0.00034463874,0.00032002907,0.0005197942,0.0005126184,0.00012290548],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0058384575,0.00002555861,0.95620537,0.0008398187,0.017354075,0.00017185694,0.0000759636,0.00047661853,0.0043191533,0.00016573016,0.0004211078,0.014106361],"study_design_scores_gemma":[0.000135973,0.00042071444,0.9878088,0.000097308686,0.008031789,0.0004157045,0.00007687626,0.00079181936,0.00076509727,0.00033275838,0.0011080047,0.000015136753],"about_ca_topic_score_codex":0.001074228,"about_ca_topic_score_gemma":0.0015343869,"teacher_disagreement_score":0.0044803703,"about_ca_system_score_codex":0.00020279041,"about_ca_system_score_gemma":0.00015960087,"threshold_uncertainty_score":0.023694754},"labels":[],"label_agreement":null},{"id":"W4223464541","doi":"10.1002/path.5910","title":"Recurrent <i>WWTR1</i><scp>S89W</scp> mutations and Hippo pathway deregulation in clear cell carcinomas of the cervix","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Hippo pathway signaling and YAP/TAZ","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"Magyar Tüdőgyógyász Társaság; European Society for Medical Oncology; Magyar Tudományos Akadémia; Ovarian Cancer Research Foundation; Hungarian Scientific Research Fund; National Cancer Institute; National Research, Development and Innovation Office; National Institutes of Health; Semmelweis Egyetem; Austrian Science Fund; Breast Cancer Research Foundation","keywords":"Deregulation; Cervix; Hippo signaling pathway; Cell; Cancer research; Medicine; Biology; Oncology; Internal medicine; Cancer; Cell biology; Signal transduction; Genetics; Economics","score_opus":0.010400437954812509,"score_gpt":0.21653825390142994,"score_spread":0.20613781594661743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223464541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986939,0.00025579412,0.00036886937,0.000019039546,0.0000036516099,0.000008217353,0.00023773563,0.000014680329,0.00039814593],"genre_scores_gemma":[0.99903405,0.0002127982,0.00024836577,0.00001723132,0.0000024159458,0.0000051006023,0.00026538558,0.0000054949323,0.00020922412],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998969,0.000008780267,0.000010115399,0.00003145114,0.00003469148,0.000018023398],"domain_scores_gemma":[0.9999137,0.000010359571,0.00004034718,0.000008169797,0.000012079233,0.00001543167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000082575316,0.00015215426,0.00017015367,0.00030691942,0.00012660006,0.0001989601,0.000094436764,0.00021251885,0.00079401163],"category_scores_gemma":[0.00018953552,0.00012459466,0.00019632804,0.00020642976,0.00019987239,0.00006300355,0.00013569664,0.00017306459,0.00020269086],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023965882,0.000028075005,0.04919233,0.000054048214,0.00006414015,0.002091842,0.00008846235,0.00018479633,0.9434101,0.00006604768,0.00016005544,0.0044204844],"study_design_scores_gemma":[0.000020939066,0.00035472433,0.69945496,0.000023211938,0.0001646393,0.026048083,0.00022796252,0.0026182586,0.2675406,0.00015755708,0.0033706103,0.000018511204],"about_ca_topic_score_codex":0.0011460994,"about_ca_topic_score_gemma":0.0018076012,"teacher_disagreement_score":0.0011460994,"about_ca_system_score_codex":0.0001638314,"about_ca_system_score_gemma":0.0001430356,"threshold_uncertainty_score":0.002656281},"labels":[],"label_agreement":null},{"id":"W4224008607","doi":"10.1002/path.5905","title":"Integrating computational pathology and proteomics to address tumor heterogeneity","year":2022,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; Brain Tumour Foundation of Canada; Terry Fox Research Institute; Ontario Institute for Cancer Research","keywords":"Proteomics; Proteogenomics; Computational biology; Precision medicine; Data science; Computer science; Biology; Bioinformatics; Medicine; Pathology; Genomics; Genome","score_opus":0.05244790506074915,"score_gpt":0.3655013408201079,"score_spread":0.31305343575935873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224008607","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003808072,0.9836268,0.011271229,0.0018399878,0.0005235465,0.000016755628,0.00003659162,0.000119987315,0.0021843563],"genre_scores_gemma":[0.0050217314,0.9827322,0.009149432,0.0009710629,0.00085595367,0.000032164247,0.00011842699,0.00003831186,0.0010806707],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99957544,0.00012732296,0.000029805098,0.00008469833,0.0001510055,0.000031735293],"domain_scores_gemma":[0.9985713,0.0009651435,0.00007779298,0.00006477952,0.00024354337,0.00007731991],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021196262,0.0013198119,0.0017505626,0.0024060912,0.0002102334,0.0019980122,0.0014994993,0.001652605,0.0017656552],"category_scores_gemma":[0.0023364339,0.00048505524,0.00080536696,0.0016808106,0.0011316016,0.0019994436,0.0018048693,0.0028456594,0.0014678598],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055676017,0.000060419494,0.000419074,0.007965884,0.0003107963,0.00020516971,0.00006788691,0.003990449,0.0026739289,0.026127512,0.024424126,0.933699],"study_design_scores_gemma":[0.00003965748,0.00015219455,0.0012308881,0.0042624935,0.00024455847,0.0019733123,0.00008617941,0.0054026092,0.003439302,0.056258515,0.9268232,0.00008708216],"about_ca_topic_score_codex":0.00078258704,"about_ca_topic_score_gemma":0.0009169587,"teacher_disagreement_score":0.0024060912,"about_ca_system_score_codex":0.0009266501,"about_ca_system_score_gemma":0.0014907825,"threshold_uncertainty_score":0.011209786},"labels":[],"label_agreement":null},{"id":"W4252321028","doi":"10.1002/1096-9896(200011)192:3<313::aid-path694>3.3.co;2-2","title":"Lumican and decorin are differentially expressed in human breast carcinoma","year":2000,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Proteoglycans and glycosaminoglycans research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shriners Hospitals for Children - Canada; University of Manitoba","funders":"","keywords":"Lumican; Decorin; Breast carcinoma; Carcinoma; Human breast; Breast cancer; Biology; Proteoglycan; Cancer research; Medicine; Pathology; Internal medicine; Cancer; Extracellular matrix; Genetics","score_opus":0.010460641838694128,"score_gpt":0.2600640436527816,"score_spread":0.24960340181408744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4252321028","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99728787,0.001434012,0.00019932717,0.00001726046,0.0000045904153,0.0000060382013,0.00014480134,0.0000137050765,0.0008923684],"genre_scores_gemma":[0.99619675,0.0008235134,0.00042502375,0.000027990027,0.000006732068,0.000017817267,0.0004895399,0.0000055842265,0.002007093],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99991107,0.000011241951,0.000005538791,0.000017702709,0.000029840965,0.000024676985],"domain_scores_gemma":[0.99992764,0.000015019473,0.000018858846,0.0000065971676,0.000013460159,0.000018413828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008408139,0.000098219396,0.00014736444,0.00060371857,0.00018429961,0.00027590027,0.000050355284,0.00017529036,0.00096717576],"category_scores_gemma":[0.0002202474,0.00011279641,0.00008410031,0.00039656667,0.00016104135,0.000089093075,0.00015773016,0.00010903938,0.0002744654],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005715426,0.000021938424,0.014651548,0.00006211149,0.000016703774,0.00075123843,0.00018844653,0.00004432258,0.97696847,0.0000894954,0.00010466326,0.006529659],"study_design_scores_gemma":[0.000042344684,0.0003794564,0.79149014,0.000016987591,0.00006707583,0.0067585,0.00047518255,0.0006901356,0.19170503,0.00022582422,0.008127187,0.000022097798],"about_ca_topic_score_codex":0.0008546782,"about_ca_topic_score_gemma":0.0010713965,"teacher_disagreement_score":0.00096717576,"about_ca_system_score_codex":0.00018751774,"about_ca_system_score_gemma":0.00010424912,"threshold_uncertainty_score":0.003235519},"labels":[],"label_agreement":null},{"id":"W4281888845","doi":"10.1002/path.5978","title":"Peak density of immature nerve cells occurs with high‐grade dysplasia in intraductal papillary mucinous neoplasms of the pancreas","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer, Stress, Anesthesia, and Immune Response","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences; Vanderbilt-Ingram Cancer Center; National Institutes of Health; National Cancer Institute; American Gastroenterological Association; Université de Montréal","keywords":"Dysplasia; Pathology; Pancreas; Intraductal papillary mucinous neoplasm; Medicine; Stroma; Biology; Internal medicine; Immunohistochemistry","score_opus":0.005966955234761933,"score_gpt":0.21079140226171808,"score_spread":0.20482444702695615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281888845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788254,0.00072811707,0.00072508573,0.000010618021,0.0000017339461,0.000007780633,0.000051528834,0.000022896747,0.00056953984],"genre_scores_gemma":[0.9984061,0.00039674225,0.00081149896,0.000008648788,0.0000032822122,0.000009006827,0.00008187606,0.000002740783,0.00028003094],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999894,0.000019724861,0.000013622419,0.000026175192,0.00002618448,0.000020195761],"domain_scores_gemma":[0.99976987,0.000043583663,0.000085609,0.000019296102,0.000026914851,0.000054709708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001765819,0.00014712408,0.00017620096,0.00079834,0.00017742155,0.00036470566,0.00010911468,0.00021869387,0.0008752904],"category_scores_gemma":[0.0002866045,0.00015799675,0.0000848591,0.00045745654,0.00034043242,0.0002728436,0.00032592178,0.00030266537,0.00017479583],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076350017,0.000056645003,0.17794731,0.00010289201,0.000028483088,0.0013465768,0.00033821588,0.00008728726,0.8072723,0.000100076395,0.00005364709,0.011902957],"study_design_scores_gemma":[0.000010669148,0.00046988355,0.92546225,0.000011934587,0.000030316833,0.004904045,0.00045127535,0.00030239663,0.06729126,0.0001345728,0.0009230597,0.000008406911],"about_ca_topic_score_codex":0.00053212023,"about_ca_topic_score_gemma":0.0006992342,"teacher_disagreement_score":0.0008752904,"about_ca_system_score_codex":0.00016046899,"about_ca_system_score_gemma":0.00013439964,"threshold_uncertainty_score":0.0029281378},"labels":[],"label_agreement":null},{"id":"W4293662930","doi":"10.1002/path.6006","title":"The proteome of clear cell ovarian carcinoma","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Canada's Michael Smith Genome Sciences Centre; Calgary Laboratory Services; BC Cancer Agency; University of British Columbia","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; National Cancer Institute; BC Cancer Foundation; Ovarian Cancer Canada; Terry Fox Research Institute; Canada Research Chairs; VGH and UBC Hospital Foundation","keywords":"Proteome; Ovarian carcinoma; Carcinoma; Computational biology; Biology; Pathology; Cancer research; Medicine; Oncology; Ovarian cancer; Bioinformatics; Internal medicine; Cancer","score_opus":0.013783770696141603,"score_gpt":0.24874270808881968,"score_spread":0.2349589373926781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293662930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857832,0.0072612637,0.0013454314,0.00028008362,0.00004926732,0.000025743757,0.0027491543,0.000035887508,0.0024700672],"genre_scores_gemma":[0.98403996,0.004390112,0.0025771789,0.0002686194,0.000047556245,0.00003283408,0.006444668,0.000035853853,0.0021632623],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998869,0.000013563882,0.000010938704,0.000032160086,0.000035357407,0.000021011918],"domain_scores_gemma":[0.9998697,0.00001871471,0.000024950534,0.0000138876585,0.000044872817,0.000027917618],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017969479,0.0001903429,0.00021987454,0.0006281868,0.0002666507,0.0005243559,0.000101156846,0.00021028733,0.00097549823],"category_scores_gemma":[0.00036060292,0.00010482928,0.00018788519,0.0006189983,0.00017895407,0.00029163493,0.00047118313,0.00022973988,0.00044622284],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048423078,0.000022555672,0.041012663,0.00032165612,0.000102451886,0.0005933299,0.00027320816,0.00019929596,0.9400637,0.00022250423,0.00091222546,0.015792184],"study_design_scores_gemma":[0.000031354106,0.00036053357,0.8377475,0.00006952929,0.00013372643,0.0049086926,0.0010731791,0.0015254556,0.123105645,0.0006331895,0.030376108,0.000035071425],"about_ca_topic_score_codex":0.00087557413,"about_ca_topic_score_gemma":0.0008483014,"teacher_disagreement_score":0.00097549823,"about_ca_system_score_codex":0.0001717475,"about_ca_system_score_gemma":0.000263557,"threshold_uncertainty_score":0.0032633543},"labels":[],"label_agreement":null},{"id":"W4295658348","doi":"10.1002/path.6011","title":"Periostin‐ and podoplanin‐positive cancer‐associated fibroblast subtypes cooperate to shape the inflamed tumor microenvironment in aggressive pancreatic adenocarcinoma","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Société Nationale Française de Gastro-Entérologie; Fondation pour la Recherche Médicale; Cancer Research UK; CNIB","keywords":"Periostin; Podoplanin; Stromal cell; Cancer-Associated Fibroblasts; Immunostaining; Tumor microenvironment; Cancer research; Biology; Pancreatic cancer; Immune system; Pathology; Cancer; Tumor progression; Immunohistochemistry; Medicine; Immunology; Cell biology; Extracellular matrix","score_opus":0.00985509176648698,"score_gpt":0.241121450656193,"score_spread":0.23126635888970604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4295658348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989737,0.0001968609,0.0005255615,0.000008598121,0.0000013717074,0.000005886897,0.00010529821,0.000014895361,0.00016781656],"genre_scores_gemma":[0.9986885,0.00012440795,0.00077341445,0.00000914061,0.0000021600897,0.0000094053285,0.00019923343,0.0000048432676,0.00018894133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985254,0.000023480872,0.00001621886,0.000035637542,0.000038946673,0.0000330855],"domain_scores_gemma":[0.9998274,0.000027639635,0.00006404327,0.000025049681,0.000019876798,0.00003595076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022279753,0.00016929272,0.00018826374,0.0005771528,0.00021174096,0.00036670125,0.00006872741,0.00013823471,0.00047074276],"category_scores_gemma":[0.00023090199,0.00013816815,0.00021861026,0.00033266007,0.00015212322,0.0001611438,0.00018706362,0.00025040965,0.00013195148],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003707831,0.00002687317,0.06068652,0.000041251787,0.000019910389,0.00029706722,0.00011577285,0.00017707527,0.9348529,0.000055433,0.000038259437,0.0033180679],"study_design_scores_gemma":[0.000029224353,0.00032520032,0.7472885,0.000010817549,0.000084749634,0.004944483,0.00049474754,0.0036022153,0.2409695,0.00025139435,0.0019802193,0.000018924993],"about_ca_topic_score_codex":0.0005196517,"about_ca_topic_score_gemma":0.00088448834,"teacher_disagreement_score":0.0005771528,"about_ca_system_score_codex":0.00015372135,"about_ca_system_score_gemma":0.00014897408,"threshold_uncertainty_score":0.0015748143},"labels":[],"label_agreement":null},{"id":"W4299400325","doi":"10.1002/path.4984","title":"Belfast Pathology 2017. 10th Joint Meeting of the British Division of the International Academy of Pathology and the Pathological Society of Great Britain &amp; Ireland, 20–23 June 2017","year":2017,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"University of Leeds; Academy of Medical Sciences; University of Bristol; National Institute for Health and Care Research","keywords":"Library science; Northern ireland; Citation; Pathological; Medicine; Pathology; History","score_opus":0.05102140125719475,"score_gpt":0.32646496379069107,"score_spread":0.27544356253349633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4299400325","genre_codex":"review","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01581686,0.39505076,0.004882279,0.12587157,0.0986679,0.00061635644,0.006537072,0.0008673488,0.35168988],"genre_scores_gemma":[0.08969426,0.2785483,0.011538443,0.009814198,0.01863067,0.00031886154,0.009570665,0.00060049887,0.5812841],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99828017,0.00048077805,0.00020951054,0.00022055257,0.00056177273,0.0002471745],"domain_scores_gemma":[0.9933528,0.0010040277,0.000783442,0.00045679422,0.0031694158,0.0012335721],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00547004,0.00068150583,0.00072309095,0.0028475747,0.0013961052,0.002775486,0.0010080737,0.0016946394,0.12971961],"category_scores_gemma":[0.008240305,0.0006091746,0.0005039801,0.0017320489,0.0020980253,0.0015263188,0.0019177209,0.002112767,0.04215284],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028843043,0.000028210288,0.0026050129,0.0007896872,0.00002272865,0.0006040937,0.00010679093,0.00013439881,0.00072089076,0.0011552037,0.7929388,0.20060572],"study_design_scores_gemma":[0.000021370035,0.000046891324,0.005514762,0.0011729284,0.000010093393,0.0020203204,0.0002777913,0.00005386966,0.00029192513,0.00065864716,0.9899157,0.000015749778],"about_ca_topic_score_codex":0.016081328,"about_ca_topic_score_gemma":0.05343652,"teacher_disagreement_score":0.12971961,"about_ca_system_score_codex":0.00483517,"about_ca_system_score_gemma":0.0053584804,"threshold_uncertainty_score":0.43395537},"labels":[],"label_agreement":null},{"id":"W4308953741","doi":"10.1002/path.6029","title":"Human scattered tubular cells represent a heterogeneous population of glycolytic dedifferentiated proximal tubule cells","year":2022,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Nierstichting","keywords":"Glycolysis; Proximal tubule; Population; Cell biology; Chemistry; Biophysics; Biology; Biochemistry; Medicine; Metabolism; Kidney; Endocrinology","score_opus":0.008108950014803483,"score_gpt":0.23587375470150532,"score_spread":0.22776480468670182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308953741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98417455,0.003516376,0.008557169,0.000057374637,0.00001898373,0.00007011356,0.0021932449,0.000102192425,0.0013098557],"genre_scores_gemma":[0.98793226,0.0012320472,0.003879529,0.0000640701,0.000020411215,0.00006519304,0.0041146195,0.000028205242,0.002663774],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997981,0.000018041237,0.000021146505,0.000073979936,0.00006142424,0.0000274155],"domain_scores_gemma":[0.99980706,0.000030382635,0.000043194166,0.00003266361,0.000052771757,0.000033950273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020613846,0.00014598947,0.00026688646,0.0005947083,0.00029296728,0.00057574187,0.00011678039,0.00020483632,0.0022706373],"category_scores_gemma":[0.00023290746,0.00016311406,0.00020337597,0.0007173533,0.0001403406,0.0001868693,0.00028763185,0.00016943499,0.00079304905],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075335836,0.000053104068,0.057197835,0.00022951911,0.000084629726,0.0011366875,0.0004188742,0.00020557542,0.9222602,0.00027821306,0.00037364912,0.017008396],"study_design_scores_gemma":[0.0000696094,0.00076308387,0.57454693,0.00006298907,0.00021269123,0.013770021,0.0008394675,0.0025703057,0.3736062,0.00063212786,0.032869846,0.000056783258],"about_ca_topic_score_codex":0.00073136576,"about_ca_topic_score_gemma":0.0010609046,"teacher_disagreement_score":0.0022706373,"about_ca_system_score_codex":0.00011834771,"about_ca_system_score_gemma":0.000162903,"threshold_uncertainty_score":0.007596016},"labels":[],"label_agreement":null},{"id":"W4316135914","doi":"10.1002/path.6053","title":"<scp>Anti‐CD40L</scp> therapy prevents the formation of precursor lesions to gastric B‐cell <scp>MALT</scp> lymphoma in a mouse model","year":2023,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Tanoto Foundation; National Medical Research Council; Public Health Agency of Canada; National Health and Medical Research Council; U.S. Department of Defense","keywords":"Immune system; Lymphoma; MALT lymphoma; Antibody; CD8; Lymphatic system; FOXP3; B cell; Immunology; Biology; CD40; Cancer research; B-cell lymphoma; Cytotoxic T cell","score_opus":0.024164696471241753,"score_gpt":0.25632074154803264,"score_spread":0.23215604507679088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4316135914","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99231625,0.0016843483,0.0017918393,0.00030306284,0.00007833084,0.00015456248,0.0009744719,0.0004774496,0.0022197762],"genre_scores_gemma":[0.99130625,0.0009684541,0.0016293,0.00017068973,0.000033182496,0.00020305837,0.0009447988,0.000053564232,0.004690802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99965596,0.00006458992,0.000034504836,0.000062576015,0.0000872,0.00009511893],"domain_scores_gemma":[0.99971765,0.000030229978,0.00007482113,0.000035265824,0.000025820182,0.000116129726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027943356,0.000704061,0.0006374643,0.000754218,0.00024237516,0.00039436895,0.0003468767,0.0008416292,0.0016220108],"category_scores_gemma":[0.0001280812,0.0002799642,0.0004778313,0.00022596614,0.0004960279,0.00036580302,0.00019873126,0.0016046505,0.00056606904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075648195,0.00040388256,0.00023866541,0.00006773759,0.00001727433,0.00015972373,0.000019611505,0.00011033246,0.9962425,0.0001527814,0.00023506163,0.0015959125],"study_design_scores_gemma":[0.00029425076,0.005079205,0.0040956256,0.000024744282,0.00004617694,0.000881247,0.00004691298,0.0018833994,0.98282146,0.00008126247,0.0047338973,0.000011916711],"about_ca_topic_score_codex":0.0011462382,"about_ca_topic_score_gemma":0.0015170433,"teacher_disagreement_score":0.0016220108,"about_ca_system_score_codex":0.00049553,"about_ca_system_score_gemma":0.00032726277,"threshold_uncertainty_score":0.005426228},"labels":[],"label_agreement":null},{"id":"W4367051560","doi":"10.1002/path.6082","title":"Receptor for hyaluronan‐mediated motility ( <scp>RHAMM</scp> ) defines an invasive niche associated with tumor progression and predicts poor outcomes in breast cancer patients","year":2023,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Proteoglycans and glycosaminoglycans research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Center for Advancing Translational Sciences; National Institute of General Medical Sciences; Masonic Cancer Center, University of Minnesota; National Cancer Institute; National Institutes of Health; Breast Cancer Society of Canada; University of Minnesota; Elsa U. Pardee Foundation; Canadian Institutes of Health Research; American Cancer Society; Cancer Research Society","keywords":"Tumor progression; Tumor microenvironment; Breast cancer; Metastasis; Cancer research; Cancer; Motility; Biology; Pathology; Immunology; Medicine; Internal medicine; Cell biology","score_opus":0.015303806304371417,"score_gpt":0.2896181696288524,"score_spread":0.274314363324481,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367051560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987638,0.00014675429,0.00022333139,0.000029430712,0.0000028652892,0.000006100951,0.0004962116,0.000014299582,0.00031735192],"genre_scores_gemma":[0.9983919,0.00006240278,0.0003194975,0.000030289037,0.0000050240624,0.00001034937,0.00084147573,0.0000042492247,0.00033476096],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989724,0.000016913038,0.000009065901,0.00002856819,0.00002602568,0.00002219256],"domain_scores_gemma":[0.9998754,0.00001751783,0.000050982497,0.00001147852,0.000010935491,0.000033590113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010042868,0.00016433488,0.00018440315,0.0003818235,0.00014941367,0.000303418,0.00010856969,0.00018684009,0.0014450984],"category_scores_gemma":[0.00016942077,0.00007943548,0.00022912932,0.00031802958,0.00014243077,0.000076339944,0.00021384208,0.00031710856,0.0002657459],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014760768,0.00011137216,0.61743927,0.000060020408,0.00010571932,0.00045812473,0.000072909985,0.00038893914,0.36922008,0.000108363114,0.000677057,0.009882089],"study_design_scores_gemma":[0.000011422324,0.00017236138,0.9778633,0.000006106005,0.00004950779,0.001524073,0.00010808732,0.0013626419,0.017929677,0.000079077916,0.0008878663,0.000005831816],"about_ca_topic_score_codex":0.0008397735,"about_ca_topic_score_gemma":0.0012097405,"teacher_disagreement_score":0.0014450984,"about_ca_system_score_codex":0.00016534331,"about_ca_system_score_gemma":0.00012579393,"threshold_uncertainty_score":0.0048342943},"labels":[],"label_agreement":null},{"id":"W4386084036","doi":"10.1002/path.6155","title":"Pitfalls in machine learning‐based assessment of tumor‐infiltrating lymphocytes in breast cancer: A report of the International Immuno‐Oncology Biomarker Working Group on Breast Cancer","year":2023,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"AI in cancer detection","field":"Computer Science","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of British Columbia; University of Guelph; Sunnybrook Health Science Centre; Health Sciences Centre; BC Cancer Agency","funders":"DOD Prostate Cancer Research Program; National Institute of Biomedical Imaging and Bioengineering; National Institute of Diabetes and Digestive and Kidney Diseases; Gilead Sciences; National Cancer Institute; National Institutes of Health; KU Leuven; Agence Nationale de la Recherche; Irish Cancer Society; Engineering and Physical Sciences Research Council; Science Foundation Ireland; Peter MacCallum Cancer Centre; U.S. Department of Veterans Affairs; National Breast Cancer Foundation; Japan Society for the Promotion of Science; Cancer Research Institute; National Health and Medical Research Council; European Commission; Svenska Sällskapet för Medicinsk Forskning; Cancer Research UK; Breast Cancer Now; Higher Education Authority; U.S. Department of Defense; DOD Peer Reviewed Cancer Research Program; Breast Cancer Research Foundation; National Center for Advancing Translational Sciences; Medical Research Council; Mayo Clinic","keywords":"Breast cancer; Oncology; Medicine; Internal medicine; Tumor-infiltrating lymphocytes; Biomarker; Cancer; Biology; Immunotherapy","score_opus":0.053811492697129655,"score_gpt":0.3746130460595623,"score_spread":0.32080155336243266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386084036","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0741502,0.49447837,0.32019797,0.08183858,0.0054617478,0.00053732883,0.00294427,0.0028516098,0.017539905],"genre_scores_gemma":[0.5137343,0.1466073,0.2985995,0.024113696,0.0051860334,0.0010027147,0.00350359,0.0016554113,0.005597517],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9708769,0.014977222,0.0024730866,0.0026301479,0.008571868,0.00047079875],"domain_scores_gemma":[0.87275857,0.09748558,0.0047271065,0.0047311154,0.019734958,0.000562661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.065165505,0.0008548701,0.0011687551,0.004232355,0.0005421614,0.0054316786,0.0022161335,0.0021343303,0.0011177011],"category_scores_gemma":[0.09834351,0.0006640029,0.0015096578,0.0023311013,0.0031155355,0.0031258678,0.0024339175,0.0029099416,0.0012942788],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004239251,0.000052092957,0.03462137,0.0038930262,0.00033679465,0.00023028525,0.0012613256,0.0075158617,0.0069023017,0.0086924415,0.030180728,0.9058899],"study_design_scores_gemma":[0.00018059977,0.0007827029,0.10992727,0.01418839,0.0015493468,0.006446396,0.002721983,0.099630676,0.084959306,0.09980451,0.57900643,0.0008023699],"about_ca_topic_score_codex":0.0029078978,"about_ca_topic_score_gemma":0.003526194,"teacher_disagreement_score":0.065165505,"about_ca_system_score_codex":0.0020576466,"about_ca_system_score_gemma":0.0017466107,"threshold_uncertainty_score":0.34463227},"labels":[],"label_agreement":null},{"id":"W4386084933","doi":"10.1002/path.6165","title":"Spatial analyses of immune cell infiltration in cancer: current methods and future directions: A report of the International Immuno‐Oncology Biomarker Working Group on Breast Cancer","year":2023,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre; Health Sciences Centre; University of Guelph; University of British Columbia; Trillium Health Centre; BC Cancer Agency","funders":"DOD Prostate Cancer Research Program; National Institute of Biomedical Imaging and Bioengineering; National Institute of Diabetes and Digestive and Kidney Diseases; Japan Society for the Promotion of Science; Medical Research Council; National Institutes of Health; KU Leuven; Ministerie van Volksgezondheid, Welzijn en Sport; Fondation ARC pour la Recherche sur le Cancer; Agence Nationale de la Recherche; Higher Education Authority; Susan G. Komen; National Health and Medical Research Council; AstraZeneca; Cancer Research Institute; Breast Cancer Now; Science Foundation Ireland; Prostate Cancer Foundation; European Commission; Svenska Sällskapet för Medicinsk Forskning; Cancer Research UK; National Heart, Lung, and Blood Institute; Peter MacCallum Cancer Centre; National Breast Cancer Foundation; U.S. Department of Veterans Affairs; U.S. Department of Defense; DOD Peer Reviewed Cancer Research Program; Breast Cancer Research Foundation; Engineering and Physical Sciences Research Council; Irish Cancer Society; National Cancer Institute; Gilead Sciences","keywords":"Breast cancer; Oncology; Biomarker; Medicine; Infiltration (HVAC); Immune system; Internal medicine; Cancer; Immunology; Biology; Geography","score_opus":0.1223017105000335,"score_gpt":0.48130078641076735,"score_spread":0.3589990759107339,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386084933","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015609583,0.9977738,0.0008592619,0.00059784285,0.0001617458,0.000009325562,0.000029078547,0.00001147926,0.00040129942],"genre_scores_gemma":[0.001350827,0.99587137,0.0016968093,0.00038080922,0.00025968536,0.000021158841,0.00006731901,0.000008372749,0.00034367875],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989681,0.00028150796,0.00011921832,0.00021642378,0.00035622984,0.000058591362],"domain_scores_gemma":[0.99548435,0.0027559365,0.00027735293,0.00014012575,0.001214359,0.00012786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0064702355,0.0010538001,0.0021943005,0.005251515,0.00026181136,0.002286787,0.0012827367,0.0014057056,0.0016855901],"category_scores_gemma":[0.0041004918,0.000694793,0.0011697504,0.004369846,0.0016055034,0.002629127,0.0012721822,0.0028293743,0.0015616688],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009567964,0.000044378627,0.00097082066,0.009219806,0.00011534049,0.000105100764,0.00009606401,0.0005818348,0.0018949558,0.0045330497,0.013442183,0.96890074],"study_design_scores_gemma":[0.000040599367,0.00031734325,0.007700392,0.011080568,0.0004598526,0.0024812655,0.00029442552,0.0010284755,0.004345466,0.008959391,0.9631401,0.00015217236],"about_ca_topic_score_codex":0.002835586,"about_ca_topic_score_gemma":0.0027012918,"teacher_disagreement_score":0.0064702355,"about_ca_system_score_codex":0.0012069679,"about_ca_system_score_gemma":0.0022175037,"threshold_uncertainty_score":0.03421825},"labels":[],"label_agreement":null},{"id":"W4386944248","doi":"10.1002/path.6205","title":"Canonical <scp>Kaiso</scp> target genes define a functional signature that associates with breast cancer survival and the invasive lobular carcinoma histological type","year":2023,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Vlaamse regering; KWF Kankerbestrijding; European Cooperation in Science and Technology; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Fonds Wetenschappelijk Onderzoek; ZonMw; Breast Cancer Now","keywords":"Breast cancer; Cancer research; Cancer; Ductal carcinoma; Anoikis; Biology; Transcriptome; Gene; Oncology; Medicine; Gene expression; Cancer cell; Genetics","score_opus":0.038442123285690875,"score_gpt":0.26092144164565845,"score_spread":0.22247931835996756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386944248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99270767,0.00027897302,0.000798459,0.000034252786,0.0000060279663,0.00001377772,0.0054642335,0.00006119499,0.00063552643],"genre_scores_gemma":[0.9903887,0.00011003514,0.0010391775,0.000047934187,0.000008132318,0.000025844502,0.0074438094,0.0000233794,0.0009130132],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998461,0.000013507989,0.0000110990095,0.00004609098,0.000042732605,0.000040446615],"domain_scores_gemma":[0.99970156,0.00003788913,0.0001462883,0.000017556076,0.000036835678,0.000059766782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010228025,0.00021943598,0.00018827361,0.00059647573,0.00013002475,0.0003601393,0.00010485797,0.00016681176,0.002440209],"category_scores_gemma":[0.00018882427,0.000079491176,0.00021889978,0.0006199104,0.00020435818,0.00012226829,0.00023317053,0.00030273866,0.0007013317],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051851047,0.0000312453,0.04086671,0.0001084203,0.000045953868,0.00012627766,0.00003508504,0.00023167438,0.9546259,0.00009524959,0.0003037129,0.003011305],"study_design_scores_gemma":[0.000021988853,0.00022227873,0.9002759,0.000017053082,0.000061002665,0.0009830049,0.0001415884,0.0018358637,0.093693025,0.00015129801,0.0025800923,0.000016927363],"about_ca_topic_score_codex":0.0008000451,"about_ca_topic_score_gemma":0.0013686925,"teacher_disagreement_score":0.002440209,"about_ca_system_score_codex":0.00018970818,"about_ca_system_score_gemma":0.00016723252,"threshold_uncertainty_score":0.008163333},"labels":[],"label_agreement":null},{"id":"W4387114978","doi":"10.1002/path.6199","title":"Hourglass, a rapid analysis framework for heterogeneous bioimaging data, identifies sex disparity in <scp>IL</scp>‐6/<scp>STAT3</scp>‐associated immune phenotypes in pancreatic cancer","year":2023,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Translational Research in Oncology; Ontario Institute for Cancer Research; University Health Network; University of Toronto; Princess Margaret Cancer Centre","funders":"Canadian Institutes of Health Research; Princess Margaret Hospital Foundation; Deutsche Forschungsgemeinschaft; Canadian Cancer Society; Alexander von Humboldt-Stiftung; European Molecular Biology Organization","keywords":"Hourglass; Pancreatic cancer; Computer science; Digital pathology; Computational biology; Data science; Medicine; Bioinformatics; Biology; Artificial intelligence; Cancer; Internal medicine; Geography","score_opus":0.027862189572760022,"score_gpt":0.2914182104532901,"score_spread":0.26355602088053004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387114978","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0152563015,0.0014000083,0.84495676,0.0008837525,0.00019570376,0.00030474638,0.034972105,0.10034487,0.0016857492],"genre_scores_gemma":[0.104791805,0.0017123981,0.81979597,0.0006504341,0.00021318668,0.0011022494,0.05811818,0.010139698,0.003476069],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99900657,0.00017435862,0.00007568453,0.00035083928,0.00030040715,0.00009207387],"domain_scores_gemma":[0.99768233,0.0012290938,0.0002617174,0.00039554978,0.00026125478,0.00016990918],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032231798,0.0015737975,0.0011260841,0.0046513774,0.0009080492,0.004002551,0.0015417131,0.00091350544,0.008213581],"category_scores_gemma":[0.0075951265,0.0009090053,0.0024681145,0.0021273033,0.0007359501,0.0019841166,0.0039011512,0.0013684435,0.0029539804],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015509304,0.0003917449,0.03573668,0.003009193,0.0023738458,0.0017465323,0.0021922546,0.058939494,0.07219746,0.03855694,0.19858235,0.5847226],"study_design_scores_gemma":[0.00025139767,0.00035041352,0.0278103,0.0003883136,0.00044578622,0.0013337644,0.0011890047,0.5797044,0.050798234,0.130361,0.20690878,0.0004585963],"about_ca_topic_score_codex":0.006717674,"about_ca_topic_score_gemma":0.021851573,"teacher_disagreement_score":0.008213581,"about_ca_system_score_codex":0.0009912963,"about_ca_system_score_gemma":0.0024995,"threshold_uncertainty_score":0.027477145},"labels":[],"label_agreement":null},{"id":"W4387157790","doi":"10.1002/path.6195","title":"Hedgehog signalling in <i>Foxd1</i>+ embryonic kidney stromal progenitors controls nephron formation via <i>Cxcl12</i> and <i>Wnt5a</i>","year":2023,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal and related cancers","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Nephron; Biology; Hedgehog; Hedgehog signaling pathway; Kidney development; Kidney; Stromal cell; Sonic hedgehog; Cell biology; Embryonic stem cell; Progenitor cell; Internal medicine; Endocrinology; Stem cell; Cancer research; Signal transduction; Medicine; Genetics","score_opus":0.006298187837148777,"score_gpt":0.2254121806718305,"score_spread":0.21911399283468172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387157790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966215,0.00033767876,0.001329923,0.000048977046,0.0000086599475,0.000010424574,0.0004002597,0.000053425123,0.001189077],"genre_scores_gemma":[0.9950336,0.00029610496,0.0014651096,0.000040030784,0.000004233421,0.00001850603,0.00045962888,0.000027977483,0.0026548095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998242,0.000020671492,0.000019685203,0.000037516147,0.0000519938,0.000046001136],"domain_scores_gemma":[0.99988353,0.00001338259,0.000036606507,0.000009780404,0.000009788737,0.000046866448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010275477,0.00012963207,0.00015874169,0.00017650331,0.00014904427,0.0003600365,0.0001481307,0.00015038346,0.0007597281],"category_scores_gemma":[0.00009796002,0.0002060683,0.00015796255,0.00010569048,0.00024323494,0.0001266707,0.00022792091,0.00040882087,0.00027375456],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006583157,0.0000053836975,0.00030249095,0.000013406675,0.000001305895,0.000028108205,0.000020378871,0.00003231491,0.9989737,0.00012746883,0.000018238556,0.00041134335],"study_design_scores_gemma":[0.000016685195,0.00009178137,0.013338168,0.0000046609443,0.000009135307,0.00019395698,0.000073056086,0.0011920786,0.9830351,0.000045721685,0.001995362,0.000004341086],"about_ca_topic_score_codex":0.0013173893,"about_ca_topic_score_gemma":0.0029017862,"teacher_disagreement_score":0.0013173893,"about_ca_system_score_codex":0.00034218415,"about_ca_system_score_gemma":0.00027976517,"threshold_uncertainty_score":0.0026194453},"labels":[],"label_agreement":null},{"id":"W4387661290","doi":"10.1002/path.6212","title":"High‐resolution and quantitative spatial analysis reveal intra‐ductal phenotypic and functional diversification in pancreatic cancer","year":2023,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Emergent BioSolutions (Canada)","funders":"Vrije Universiteit Brussel; Stichting Tegen Kanker; Fonds Wetenschappelijk Onderzoek; Agentschap Innoveren en Ondernemen","keywords":"Pancreatic cancer; Phenotype; Biology; Diversification (marketing strategy); Pancreatic ductal adenocarcinoma; Cancer; Computational biology; Pathology; Medicine; Genetics; Gene","score_opus":0.051824973291852254,"score_gpt":0.34845401667477155,"score_spread":0.2966290433829193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387661290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9605673,0.002221796,0.033723935,0.000081103906,0.00001007714,0.000024293007,0.0005655508,0.00033400644,0.0024720475],"genre_scores_gemma":[0.9789217,0.0005268936,0.018599492,0.00003213578,0.0000054493057,0.000026329932,0.00039790352,0.000040788145,0.0014492095],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99984825,0.000034164128,0.000010538964,0.00003973299,0.000038316266,0.000029052871],"domain_scores_gemma":[0.99980265,0.000058174537,0.000026724005,0.000040457933,0.000040700426,0.000031396456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038280993,0.00014168954,0.00012842719,0.0009115374,0.00014343072,0.00044946815,0.00012213907,0.0003063263,0.0015582236],"category_scores_gemma":[0.00022592436,0.0002611679,0.0001103598,0.0004155552,0.0002239301,0.00021711404,0.00027499895,0.00030120963,0.00050283375],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012657682,0.0000108496815,0.004460447,0.00005503049,0.0000103576485,0.00009280521,0.00005886734,0.00021301406,0.9904055,0.00011561576,0.000054500742,0.0043963706],"study_design_scores_gemma":[0.000013329119,0.00020256454,0.22356167,0.000022898588,0.000060439335,0.0038423098,0.00046334878,0.008572641,0.757655,0.0004919303,0.0050858976,0.000027932785],"about_ca_topic_score_codex":0.00038494015,"about_ca_topic_score_gemma":0.0006356,"teacher_disagreement_score":0.0015582236,"about_ca_system_score_codex":0.0001569557,"about_ca_system_score_gemma":0.00007331676,"threshold_uncertainty_score":0.005212724},"labels":[],"label_agreement":null},{"id":"W4387729256","doi":"10.1002/path.6217","title":"Mesonephric‐like adenocarcinoma harbours characteristic copy number variations and a distinct <scp>DNA</scp> methylation signature closely related to mesonephric adenocarcinoma of the cervix","year":2023,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Endometrial and Cervical Cancer Treatments","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of British Columbia; McGill University; University of Calgary; University of Alberta","funders":"Medizinischen Fakultät Heidelberg, Universität Heidelberg","keywords":"Biology; Mesonephric duct; Clear cell carcinoma; Serous fluid; Adenocarcinoma; Ovary; Clear cell; Carcinoma; Pathology; Genetics; Cancer; Medicine","score_opus":0.017241683613543477,"score_gpt":0.2797716824930637,"score_spread":0.2625299988795202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387729256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984817,0.00042072815,0.000491591,0.00001825438,0.0000019489023,0.000006248084,0.0002907669,0.000013207807,0.0002755324],"genre_scores_gemma":[0.9989542,0.0001788347,0.00038470872,0.000012103209,0.0000031808695,0.000008249564,0.00028127967,0.0000027834967,0.00017453697],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998958,0.000011418355,0.000009710799,0.000036049525,0.000027894024,0.000019172418],"domain_scores_gemma":[0.9998067,0.00004083538,0.00008657491,0.000017486818,0.000018863542,0.000029634943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010234932,0.00010868467,0.00018385363,0.0006930382,0.00014447089,0.00022004923,0.000097731805,0.00014209232,0.0007409101],"category_scores_gemma":[0.00039411098,0.00009542474,0.00012928408,0.00035257236,0.0001551564,0.00009850811,0.00016782132,0.00016471153,0.00009979053],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030876737,0.000014859922,0.24389589,0.00006953128,0.00008716096,0.0010182227,0.00017320096,0.000284703,0.743818,0.00011748503,0.00010600415,0.010106207],"study_design_scores_gemma":[0.000009983457,0.00011267921,0.962238,0.000006214354,0.000044549022,0.005588084,0.00009620873,0.0007473101,0.030044267,0.000122008634,0.0009818645,0.000008717648],"about_ca_topic_score_codex":0.0013673408,"about_ca_topic_score_gemma":0.0024050416,"teacher_disagreement_score":0.0013673408,"about_ca_system_score_codex":0.00014162497,"about_ca_system_score_gemma":0.00011489041,"threshold_uncertainty_score":0.0027187467},"labels":[],"label_agreement":null},{"id":"W4390950175","doi":"10.1002/path.6238","title":"Image‐based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno‐oncology Biomarker Working Group on Breast Cancer","year":2024,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of British Columbia; University of Guelph; Sunnybrook Health Science Centre; Health Sciences Centre; BC Cancer Agency","funders":"National Institute of Biomedical Imaging and Bioengineering; National Cancer Institute; Servier; Incyte; Medical Research Council; Chugai Pharmaceutical; National Institutes of Health; Peter MacCallum Cancer Centre; Ligue Contre le Cancer; KU Leuven; DOD Prostate Cancer Research Program; Japan Society for the Promotion of Science; Astellas Pharma; Eisai; Fondation ARC pour la Recherche sur le Cancer; DOD Peer Reviewed Cancer Research Program; Ministerie van Volksgezondheid, Welzijn en Sport; Daiichi-Sankyo; Agence Nationale de la Recherche; Amgen; Science Foundation Ireland; AstraZeneca; Genentech; European Commission; Engineering and Physical Sciences Research Council; Yuhan; Irish Cancer Society; National Breast Cancer Foundation; Svenska Sällskapet för Medicinsk Forskning; KWF Kankerbestrijding; U.S. Department of Defense; Cancer Research UK; Seagen; Puma Biotechnology; Daiichi Sankyo Europe; Veracyte; Pfizer; Susan G. Komen; National Institute of Diabetes and Digestive and Kidney Diseases; Carrick Therapeutics; Gilead Sciences; GlaxoSmithKline; Sanofi; California Breast Cancer Research Program; National Health and Medical Research Council; Cancer Research Institute; Eli Lilly and Company; Bristol-Myers Squibb; Breast Cancer Research Foundation; Higher Education Authority; Silverback Therapeutics; U.S. Department of Veterans Affairs; Irish Research eLibrary","keywords":"Multiplex; Breast cancer; Biomarker; Oncology; Medicine; Profiling (computer programming); Internal medicine; Immune system; Cancer; Pathology; Bioinformatics; Immunology; Biology; Genetics; Computer science","score_opus":0.07682459191772924,"score_gpt":0.41873753895062743,"score_spread":0.3419129470328982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390950175","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010669014,0.9983034,0.0003337568,0.00042266567,0.0002060124,0.0000069618886,0.000014179842,0.000009683931,0.00059666345],"genre_scores_gemma":[0.0014126231,0.99646145,0.0005747003,0.00054546795,0.00023859997,0.000017666216,0.000042802858,0.000004534499,0.0007021911],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99947435,0.00012429988,0.00004574844,0.00009921426,0.00020781581,0.000048620026],"domain_scores_gemma":[0.99869484,0.0007181199,0.00013409037,0.000037062662,0.0003260076,0.000090034744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026676685,0.0008395679,0.0016194159,0.0031059787,0.0002593666,0.0017895723,0.0010812177,0.0018707311,0.0017409804],"category_scores_gemma":[0.0016625458,0.0005019069,0.00062582426,0.0019009064,0.0011654949,0.0021333091,0.0010229109,0.0025170194,0.0019063061],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000111036694,0.00009110271,0.00025847697,0.009243462,0.0000901049,0.00024651253,0.000092009905,0.00044663053,0.0058234856,0.0073283943,0.027801272,0.9484675],"study_design_scores_gemma":[0.000027396225,0.00023142312,0.0011670166,0.002686754,0.0001026274,0.002458846,0.0000797905,0.0003097735,0.0035970695,0.0030165988,0.986278,0.000044699722],"about_ca_topic_score_codex":0.0007751993,"about_ca_topic_score_gemma":0.0009753281,"teacher_disagreement_score":0.0031059787,"about_ca_system_score_codex":0.0009587936,"about_ca_system_score_gemma":0.0011219773,"threshold_uncertainty_score":0.014108121},"labels":[],"label_agreement":null},{"id":"W4391433335","doi":"10.1002/path.6250","title":"Detailed <scp>DNA</scp> methylation characterisation of phyllodes tumours identifies a signature of malignancy and distinguishes phyllodes from metaplastic breast carcinoma","year":2024,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Breast Lesions and Carcinomas","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Emergent BioSolutions (Canada)","funders":"National Health and Medical Research Council; Tour de Cure; National Breast Cancer Foundation","keywords":"Phyllodes tumor; Malignancy; Metaplastic carcinoma; Breast carcinoma; Carcinoma; Breast cancer; Cancer research; Medicine; Biology; Pathology; Internal medicine; Cancer","score_opus":0.013056926591371453,"score_gpt":0.2449160839471769,"score_spread":0.23185915735580545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391433335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95151126,0.0017091995,0.0078796195,0.00045740593,0.000033170436,0.00009002344,0.03404955,0.00035084263,0.003918919],"genre_scores_gemma":[0.97042197,0.00069101085,0.0047002626,0.00029534317,0.000022246404,0.00013886738,0.021550678,0.00009995176,0.002079696],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99967694,0.000032130098,0.00003321622,0.00012982867,0.00007883328,0.00004891841],"domain_scores_gemma":[0.9996493,0.000098020195,0.000085522865,0.000063286105,0.00005815474,0.000045685807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042912154,0.00021362689,0.00038299174,0.0006533792,0.00033403712,0.00053607655,0.00028342256,0.000353089,0.003577796],"category_scores_gemma":[0.0012862877,0.0001875072,0.0004103072,0.0006949433,0.0002960353,0.00016397361,0.0004714055,0.00055650563,0.00079662673],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019409704,0.00006559464,0.50868446,0.0009077066,0.00057278725,0.0011026709,0.0005736551,0.0045341677,0.40266192,0.0010498906,0.010489594,0.06741656],"study_design_scores_gemma":[0.0000750085,0.00029871467,0.87764287,0.0000914076,0.00033745152,0.0037425628,0.00022700148,0.0066175526,0.08716342,0.0014035843,0.022358065,0.00004233961],"about_ca_topic_score_codex":0.0028327627,"about_ca_topic_score_gemma":0.006129941,"teacher_disagreement_score":0.003577796,"about_ca_system_score_codex":0.00031801045,"about_ca_system_score_gemma":0.00039138494,"threshold_uncertainty_score":0.011968911},"labels":[],"label_agreement":null},{"id":"W4391685436","doi":"10.1002/path.6255","title":"Defect in degradation of glycogenin‐exposed residual glycogen in lysosomes is the fundamental pathomechanism of Pompe disease","year":2024,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Lysosomal Storage Disorders Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"National Key Research and Development Program of China; Natural Science Fund for Distinguished Young Scholars of Shandong Province; National Natural Science Foundation of China","keywords":"Glycogen; Lysosome; Glycogenolysis; Glycogen debranching enzyme; Glycogen branching enzyme; Biology; Glycogen storage disease; Biochemistry; Glycogen synthase; Chemistry; Enzyme","score_opus":0.030033434035918755,"score_gpt":0.3128656680416781,"score_spread":0.28283223400575935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391685436","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98628914,0.0027321628,0.009170641,0.00012914915,0.000068260015,0.000041505486,0.00041066736,0.00009459772,0.0010638195],"genre_scores_gemma":[0.9948867,0.0011058397,0.002333922,0.000058481564,0.000009277726,0.000024361543,0.00025971822,0.000012077287,0.0013096862],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991703,0.000010334927,0.0000116025285,0.000029187455,0.000018036846,0.000013917512],"domain_scores_gemma":[0.99994457,0.000008792853,0.000015008086,0.0000061901446,0.0000063907237,0.000019012192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015133055,0.00041567264,0.00024068025,0.00018638175,0.00014868003,0.00024589666,0.0001129108,0.00030798404,0.0008105588],"category_scores_gemma":[0.00010631749,0.00012336187,0.00031282898,0.00008892137,0.000244442,0.00020423818,0.00026162373,0.0004794286,0.00016967457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006175617,0.000009238382,0.00054950383,0.000042463053,0.000006908455,0.00036105973,0.000011528358,0.000052427622,0.99806625,0.000114150236,0.00003175932,0.0006930681],"study_design_scores_gemma":[0.000020572506,0.00028173436,0.022977108,0.000028883896,0.00004516097,0.0030345854,0.00008564376,0.0020555279,0.9678371,0.00033419186,0.0032851314,0.000014462147],"about_ca_topic_score_codex":0.0003037572,"about_ca_topic_score_gemma":0.00031686437,"teacher_disagreement_score":0.0008105588,"about_ca_system_score_codex":0.0001639433,"about_ca_system_score_gemma":0.00013304118,"threshold_uncertainty_score":0.002711594},"labels":[],"label_agreement":null},{"id":"W4399062026","doi":"10.1002/path.6292","title":"Multiplex imaging reveals spatially resolved <scp>DNA</scp>‐damage response neighborhoods in <scp><i>TP53</i></scp>‐mutated myelodysplastic neoplasms","year":2024,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University; University of Toronto; University Health Network","funders":"Medical Center, University of Rochester","keywords":"Biology; Myeloid; DNA damage; Myeloid leukemia; Multiplex; Molecular biology; Bone marrow; Myelodysplastic syndromes; DNA; Cancer research; Immunology; Genetics","score_opus":0.01564215269071999,"score_gpt":0.2954155237650931,"score_spread":0.2797733710743731,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399062026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904783,0.00088224,0.0071325134,0.000045281442,0.000004166248,0.000013454382,0.0001314728,0.00011483371,0.0011977188],"genre_scores_gemma":[0.9883901,0.00057007803,0.009578977,0.0000399623,0.000007874185,0.00002797032,0.00016236892,0.000024123608,0.0011985683],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999504,0.000005095951,0.0000022324577,0.000014778185,0.000012609232,0.000014857093],"domain_scores_gemma":[0.9999392,0.000008845777,0.000021296388,0.000004714482,0.000009147206,0.000016761796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104073006,0.0001479991,0.00008186787,0.00044403865,0.00012757171,0.00023505693,0.000109297645,0.00023591662,0.0008663474],"category_scores_gemma":[0.00008395672,0.00016832951,0.0000830036,0.00016254581,0.00015451816,0.000177219,0.00020334747,0.00021668119,0.00018441686],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004210573,0.00000644292,0.00089008966,0.000018417435,0.000004527781,0.00009505265,0.000022004471,0.000066085384,0.9976418,0.00005343628,0.000024003251,0.0011361204],"study_design_scores_gemma":[0.000012955921,0.00016094938,0.0991746,0.000011398547,0.00004296789,0.002492689,0.00015329158,0.005916978,0.8900788,0.00020042283,0.0017431871,0.000011787718],"about_ca_topic_score_codex":0.00045774094,"about_ca_topic_score_gemma":0.0008696127,"teacher_disagreement_score":0.0008663474,"about_ca_system_score_codex":0.00016331732,"about_ca_system_score_gemma":0.00007427224,"threshold_uncertainty_score":0.0028982162},"labels":[],"label_agreement":null},{"id":"W4400051349","doi":"10.1002/path.6320","title":"Liver‐specific <scp>DICER1</scp> syndrome model mice develop cystic liver tumors with defective primary cilia","year":2024,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Congenital Diaphragmatic Hernia Studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Japan Society for the Promotion of Science; Takeda Science Foundation","keywords":"Cilium; Congenital hepatic fibrosis; Intrahepatic bile ducts; Pathology; Carcinogenesis; Hyperplasia; Bile duct; Pathological; Pathogenesis; Cancer research; Cholangiocyte; Cyst; Hepatocellular carcinoma; Biology; Cystic fibrosis; Medicine; Gene; Internal medicine; Portal hypertension; Genetics; Cirrhosis","score_opus":0.018053722134501234,"score_gpt":0.23814304767350786,"score_spread":0.22008932553900662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400051349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95873827,0.00309271,0.01729844,0.0015087391,0.0003592053,0.00024962294,0.005629738,0.0017672217,0.011356051],"genre_scores_gemma":[0.9266308,0.002644355,0.025767948,0.00055829174,0.00010976456,0.0005039438,0.0064659207,0.00066581793,0.036653064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923134,0.00013173382,0.00010124474,0.00020497301,0.00020842017,0.00012223725],"domain_scores_gemma":[0.9992447,0.00014924211,0.00020578703,0.00007887219,0.000050616647,0.0002707014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005545103,0.0008684033,0.0005124992,0.00245032,0.0005750645,0.0005288949,0.0006161674,0.0015167508,0.0071352585],"category_scores_gemma":[0.00023783384,0.00053424324,0.0005781815,0.00047254062,0.0009141716,0.0005872933,0.0006471243,0.0016976633,0.0016783247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033556554,0.00016141323,0.0005836171,0.000083629304,0.000027099602,0.00070695364,0.00008752774,0.0001326382,0.9939727,0.00090794906,0.0006156769,0.0023851667],"study_design_scores_gemma":[0.00018018091,0.0008925096,0.007885786,0.000045292098,0.000078395846,0.0050532655,0.00012163221,0.002604707,0.9668446,0.00048244125,0.015776636,0.000034532073],"about_ca_topic_score_codex":0.0009817082,"about_ca_topic_score_gemma":0.0014867597,"teacher_disagreement_score":0.0071352585,"about_ca_system_score_codex":0.0005359491,"about_ca_system_score_gemma":0.00037598034,"threshold_uncertainty_score":0.023869872},"labels":[],"label_agreement":null},{"id":"W4401188844","doi":"10.1002/path.6338","title":"Changes in the tumour microenvironment mark the transition from serous borderline tumour to low‐grade serous carcinoma","year":2024,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia; BC Cancer Agency","funders":"BC Cancer Foundation; VGH and UBC Hospital Foundation; U.S. Department of Defense","keywords":"Serous fluid; Serous carcinoma; Medicine; Carcinoma; Pathology; Transition (genetics); Oncology; Internal medicine; Chemistry; Cancer","score_opus":0.014658593947080474,"score_gpt":0.2590219060938736,"score_spread":0.24436331214679313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401188844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991381,0.0002805387,0.00020473216,0.000012107539,0.0000030133451,0.000004987207,0.000095102936,0.000010363192,0.00025105296],"genre_scores_gemma":[0.99928826,0.0001367185,0.00026377445,0.000014182815,0.0000028144539,0.0000056442145,0.0001691631,0.0000024203755,0.00011715004],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999274,0.0000119074,0.0000071999216,0.00001587586,0.000018674446,0.000018919403],"domain_scores_gemma":[0.99983144,0.000034436885,0.000047012483,0.000010123566,0.000027601998,0.000049376336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014753781,0.00010790356,0.00015324308,0.0006816958,0.00018032796,0.0004445094,0.00008815652,0.00016072273,0.0010460728],"category_scores_gemma":[0.00032424973,0.00011073582,0.00014673486,0.00036003598,0.00021990473,0.00022932909,0.00021702732,0.00021000039,0.00021488467],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017697139,0.00006356459,0.24833417,0.00013081086,0.00005375865,0.0014196238,0.0002496306,0.00013701868,0.7398728,0.00011257378,0.0002055396,0.007650656],"study_design_scores_gemma":[0.000016790404,0.000318126,0.9532502,0.000009715752,0.000031118852,0.0032760114,0.0005095966,0.0009147872,0.04046207,0.00012151707,0.0010826676,0.0000074776335],"about_ca_topic_score_codex":0.00052962254,"about_ca_topic_score_gemma":0.00048913533,"teacher_disagreement_score":0.0010460728,"about_ca_system_score_codex":0.00015169808,"about_ca_system_score_gemma":0.000095276264,"threshold_uncertainty_score":0.0034994483},"labels":[],"label_agreement":null},{"id":"W4401289840","doi":"10.1002/path.6329","title":"The unique metabolome of clear cell ovarian carcinoma","year":2024,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; BC Children's Hospital; BC Cancer Agency; University of British Columbia","funders":"Canadian Institutes of Health Research; Canadian Cancer Society","keywords":"Metabolome; Ovarian carcinoma; Carcinoma; Medicine; Metabolomics; Computational biology; Ovarian cancer; Biology; Bioinformatics; Pathology; Internal medicine; Cancer","score_opus":0.00823172038802412,"score_gpt":0.24737367166557372,"score_spread":0.2391419512775496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401289840","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98681253,0.0048884824,0.0016845058,0.00034023344,0.000026621365,0.000026723572,0.0047037904,0.00004691806,0.0014702004],"genre_scores_gemma":[0.98866814,0.0028638316,0.002193392,0.00026046592,0.000037668164,0.00003255347,0.0047968337,0.00002957358,0.0011175018],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999163,0.0000144045525,0.000007129798,0.000025100313,0.0000223263,0.000014722484],"domain_scores_gemma":[0.9999156,0.000014121892,0.000022842616,0.000009100127,0.00002372456,0.000014616305],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011024336,0.00017963312,0.0003456802,0.0005405742,0.00020120971,0.00041699546,0.00007489142,0.00017833998,0.0010744501],"category_scores_gemma":[0.00030610297,0.00009770897,0.00020283238,0.00066472247,0.00012487394,0.00016451455,0.0004306714,0.00016300804,0.00021645984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017169355,0.0000318435,0.14739011,0.00048831775,0.0002777825,0.00093023665,0.0004592536,0.00049594947,0.7952595,0.0003067889,0.0013567087,0.05128655],"study_design_scores_gemma":[0.000034024084,0.00037762738,0.9318632,0.000053226144,0.00019228183,0.0035317135,0.00069448684,0.0014402225,0.045640953,0.0011606533,0.014962034,0.00004950654],"about_ca_topic_score_codex":0.0016096017,"about_ca_topic_score_gemma":0.002378222,"teacher_disagreement_score":0.0016096017,"about_ca_system_score_codex":0.00014578749,"about_ca_system_score_gemma":0.00017214262,"threshold_uncertainty_score":0.003594458},"labels":[],"label_agreement":null},{"id":"W4402924092","doi":"10.1002/path.6352","title":"Genomic analysis defines distinct pancreatic and neuronal subtypes of lung carcinoid","year":2024,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Neuroendocrine Tumor Research Advances","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Wellcome Trust","keywords":"Biology; Downregulation and upregulation; Exome sequencing; Transcriptome; Cancer research; Neuroendocrine tumors; Methylation; Molecular biology; Genetics; Gene; Mutation; Endocrinology; Gene expression","score_opus":0.015885521287861207,"score_gpt":0.3108011249003559,"score_spread":0.2949156036124947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402924092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99878305,0.00013985818,0.00034062035,0.0000131793,0.0000013724781,0.0000046974324,0.00050237385,0.000009061224,0.0002057408],"genre_scores_gemma":[0.99824643,0.00007167266,0.00034574504,0.000022821414,0.0000020952882,0.000007502299,0.0010774367,0.000007105812,0.0002191473],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998672,0.000013980751,0.000010820717,0.000056889534,0.00002472287,0.000026401423],"domain_scores_gemma":[0.9997975,0.000052031504,0.000072526505,0.000018255163,0.000023758277,0.00003594619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008427412,0.00012266125,0.00016994191,0.00059992453,0.00012899359,0.00036268015,0.000101217054,0.00019734056,0.0010169627],"category_scores_gemma":[0.00034616282,0.00010520572,0.00020776183,0.00044537996,0.0001493839,0.000079260615,0.00026470207,0.0001611074,0.00020311608],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010611399,0.000027904503,0.39983353,0.00007502668,0.00014769312,0.000888257,0.00020758722,0.00031915252,0.5870341,0.00009471524,0.00017698393,0.010133896],"study_design_scores_gemma":[0.000008431047,0.00010266985,0.98839813,0.000005229238,0.00004523019,0.001417642,0.00014044096,0.00052588095,0.008834133,0.00006400037,0.00045387782,0.0000043570208],"about_ca_topic_score_codex":0.00087563164,"about_ca_topic_score_gemma":0.0014603512,"teacher_disagreement_score":0.0010169627,"about_ca_system_score_codex":0.000120917655,"about_ca_system_score_gemma":0.00007575645,"threshold_uncertainty_score":0.003402114},"labels":[],"label_agreement":null},{"id":"W4405281526","doi":"10.1002/path.6373","title":"Stress testing deep learning models for prostate cancer detection on biopsies and surgical specimens","year":2024,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Prostate Cancer Diagnosis and Treatment","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre","funders":"DOD Prostate Cancer Research Program; National Institute of Biomedical Imaging and Bioengineering; DOD Peer Reviewed Cancer Research Program; National Cancer Institute; University of Texas MD Anderson Cancer Center; AstraZeneca; Helsingin Yliopisto; Varian Medical Systems; Emory University; NRG Oncology; U.S. Department of Veterans Affairs","keywords":"Convolutional neural network; Prostate cancer; Deep learning; Artificial intelligence; Prostate; Biopsy; Medicine; Cancer; Pathology; Computer science; Machine learning; Radiology; Internal medicine","score_opus":0.046580417282271865,"score_gpt":0.3153638255836194,"score_spread":0.26878340830134756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405281526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99038017,0.00029017476,0.007934915,0.00012202124,0.00009511665,0.000050224964,0.00026885193,0.0002589966,0.0005995063],"genre_scores_gemma":[0.99325526,0.00006511602,0.0050644362,0.000055781205,0.000018326891,0.00003728758,0.0008685097,0.000020976666,0.00061433867],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.9989561,0.0003058327,0.000083637125,0.00029988933,0.00020799883,0.00014647756],"domain_scores_gemma":[0.99618834,0.0019172175,0.00036149993,0.00042137777,0.00089989515,0.00021172267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034572228,0.0013766459,0.0005787964,0.00049010164,0.00031929184,0.00055766554,0.00091375655,0.00088411965,0.001133946],"category_scores_gemma":[0.0075149895,0.00041041322,0.00090502005,0.00030454595,0.00065201445,0.0006503202,0.0010814777,0.0009265521,0.0003878442],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034383193,0.0014869533,0.12270889,0.00037751315,0.0008550296,0.00039724415,0.00031831386,0.6353699,0.052656792,0.00067531405,0.0033775356,0.17833826],"study_design_scores_gemma":[0.000035631485,0.0011137387,0.017399415,0.000027164375,0.00006681597,0.00006720664,0.00008668964,0.9583809,0.022100104,0.00035085142,0.0003481858,0.000023313673],"about_ca_topic_score_codex":0.010530993,"about_ca_topic_score_gemma":0.0086869635,"teacher_disagreement_score":0.010530993,"about_ca_system_score_codex":0.001048273,"about_ca_system_score_gemma":0.0007302472,"threshold_uncertainty_score":0.02093941},"labels":[],"label_agreement":null},{"id":"W4407753548","doi":"10.1002/path.6401","title":"Distinct spatial N‐glycan profiles reveal glioblastoma‐specific signatures","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; McGill University; CancerCare Manitoba; Research Institute in Oncology and Hematology; Jewish General Hospital; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Glycan; Temozolomide; Glycome; Glioma; Glycosylation; Cancer research; Biology; N-linked glycosylation; Molecular biology; Biochemistry; Glycoprotein","score_opus":0.008351423553642824,"score_gpt":0.2766734745112881,"score_spread":0.2683220509576453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407753548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975811,0.00081748754,0.00083073095,0.000020915259,0.000002669367,0.0000073174247,0.00016658989,0.000016294567,0.00055695063],"genre_scores_gemma":[0.99721175,0.00079669076,0.0011445824,0.000027440768,0.000003066997,0.00000991162,0.00036603483,0.000004601948,0.0004359275],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999671,0.0000036798847,0.0000017739286,0.0000058642877,0.000010261802,0.000011306815],"domain_scores_gemma":[0.99997115,0.000003058598,0.00001161414,0.000002170578,0.000005585795,0.0000065071054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059116694,0.00019163858,0.00012749546,0.00025915625,0.000067480316,0.00017524575,0.00005685936,0.0001371434,0.00025477895],"category_scores_gemma":[0.000072561954,0.00007856455,0.00010422725,0.00018140703,0.00010352891,0.00011015078,0.00012789863,0.00012889411,0.00008046755],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011924225,0.000006706375,0.003907,0.000035352637,0.000011225487,0.00007369149,0.0000297303,0.00005621432,0.9930528,0.000037226688,0.0000248026,0.0026460008],"study_design_scores_gemma":[0.000011617779,0.00043302568,0.44142324,0.000013695566,0.000086189044,0.0021174618,0.00027225923,0.002697338,0.5494725,0.00029406566,0.003161644,0.000016968974],"about_ca_topic_score_codex":0.0009825728,"about_ca_topic_score_gemma":0.0016006982,"teacher_disagreement_score":0.0009825728,"about_ca_system_score_codex":0.00012163464,"about_ca_system_score_gemma":0.000109474764,"threshold_uncertainty_score":0.001953721},"labels":[],"label_agreement":null},{"id":"W4408161913","doi":"10.1002/path.6407","title":"Cellular origins of mucinous ovarian carcinoma","year":2025,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Calgary","funders":"National Health and Medical Research Council; Peter MacCallum Foundation","keywords":"Mucinous carcinoma; Ovarian carcinoma; Pathology; Ovary; Carcinoma; Medicine; Oncology; Ovarian cancer; Adenocarcinoma; Internal medicine; Cancer","score_opus":0.0393556631260376,"score_gpt":0.33682893445357276,"score_spread":0.29747327132753515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408161913","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015001964,0.99901104,0.000049304967,0.00012087548,0.00008299398,0.0000017087107,0.000008410993,0.000002427137,0.0005732399],"genre_scores_gemma":[0.0013880696,0.998171,0.000056765137,0.00009093789,0.00007362633,0.0000020172065,0.000020849933,6.530482e-7,0.00019608035],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99984527,0.000026442773,0.000026619406,0.000023811946,0.000058873116,0.00001898338],"domain_scores_gemma":[0.99979657,0.000101529884,0.000032484397,0.000006812458,0.00004683878,0.000015779027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003457931,0.0004195549,0.000843164,0.0017631239,0.0001694256,0.0007321352,0.00042737817,0.0005828792,0.0015851408],"category_scores_gemma":[0.0006828776,0.00015758556,0.00029179762,0.0014407405,0.00052461814,0.00079811405,0.00055904954,0.0008809591,0.000851579],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007285493,0.000021498427,0.00051712774,0.024313135,0.00008225352,0.00075756095,0.000116521485,0.00038917616,0.003147956,0.0064788973,0.01852744,0.94557565],"study_design_scores_gemma":[0.00000856395,0.000048373935,0.0013256771,0.003842028,0.000080622805,0.0044804374,0.00006397337,0.000043705793,0.0006946764,0.001508977,0.9878906,0.000012347316],"about_ca_topic_score_codex":0.0009435401,"about_ca_topic_score_gemma":0.0012126346,"teacher_disagreement_score":0.0017631239,"about_ca_system_score_codex":0.00054042274,"about_ca_system_score_gemma":0.0008586146,"threshold_uncertainty_score":0.0053028464},"labels":[],"label_agreement":null},{"id":"W4409409695","doi":"10.1002/path.6429","title":"Activated immune infiltrates expand opportunities for targeted therapy in <scp><i>p53</i></scp>‐abnormal endometrial carcinoma","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Endometrial and Cervical Cancer Treatments","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency; University of British Columbia","funders":"BC Cancer Foundation; Vancouver Coastal Health Research Institute; Canada Research Chairs; Terry Fox Research Institute; Canadian Cancer Society; VGH and UBC Hospital Foundation","keywords":"Immune system; Immunotherapy; Carcinoma; Cancer research; Tumor microenvironment; Endometrial cancer; Medicine; Oncology; Biology; Immunology; Cancer; Internal medicine","score_opus":0.05714110604277315,"score_gpt":0.31043595004946833,"score_spread":0.25329484400669516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409409695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987663,0.00037140897,0.00045165478,0.000013695544,0.0000010667458,0.000010694507,0.000041375773,0.000008497279,0.00033523954],"genre_scores_gemma":[0.9994405,0.00012109985,0.00029470335,0.000011333391,0.000003239978,0.0000070279007,0.000052872278,0.0000020430136,0.000067237226],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9999014,0.000036898073,0.000008427446,0.000017773962,0.000020727299,0.000014740373],"domain_scores_gemma":[0.9998647,0.00004610582,0.00004145764,0.000017323813,0.000010956388,0.000019424524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026607525,0.00011402383,0.00023642756,0.0003946704,0.00011552969,0.00024689836,0.00008932532,0.00010692631,0.00063056155],"category_scores_gemma":[0.00039215,0.00011108683,0.00017035626,0.00018845807,0.0001523841,0.00016817117,0.00023647287,0.00013163203,0.00011071449],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00244623,0.00010371294,0.7435678,0.00010800526,0.00006331543,0.0008306912,0.00018704576,0.0022082804,0.19235899,0.0002694176,0.0001949665,0.05766148],"study_design_scores_gemma":[0.00006572148,0.0011489061,0.95253855,0.000018617531,0.00010392298,0.0041136253,0.000244472,0.007869771,0.030995648,0.000501153,0.0023915032,0.000008010273],"about_ca_topic_score_codex":0.00041071678,"about_ca_topic_score_gemma":0.00062096125,"teacher_disagreement_score":0.00063056155,"about_ca_system_score_codex":0.0001663716,"about_ca_system_score_gemma":0.00010845152,"threshold_uncertainty_score":0.0021094084},"labels":[],"label_agreement":null},{"id":"W4410406576","doi":"10.1002/path.6433","title":"Cystathionine gamma‐lyase‐mediated hypoxia inducible factor 1‐alpha expression drives clear cell ovarian cancer progression","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Sulfur Compounds in Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Canada's Michael Smith Genome Sciences Centre; Terry Fox Research Institute; University of British Columbia","funders":"Terry Fox Research Institute; Canada Research Chairs; Canadian Institutes of Health Research; Cancer Research Society","keywords":"Ovarian cancer; Cancer research; Biology; Glutathione; Cystathionine beta synthase; Metastasis; Cancer cell; In vivo; Cancer; Chemistry; Biochemistry; Cysteine; Enzyme; Genetics","score_opus":0.013103014166695584,"score_gpt":0.29475352067640825,"score_spread":0.2816505065097127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410406576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925984,0.0016904128,0.0025787384,0.00019807115,0.00006597893,0.00003712324,0.00075744017,0.00011985072,0.0019539157],"genre_scores_gemma":[0.9953603,0.00048206453,0.000686957,0.00006283449,0.000010170882,0.00003489607,0.00050174707,0.000014778477,0.0028462636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998423,0.000021043386,0.000011128326,0.000039749357,0.00004038194,0.000045398436],"domain_scores_gemma":[0.99983215,0.000023019284,0.00003904022,0.000021472992,0.000034984318,0.000049189777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015480675,0.00011904038,0.00015784708,0.00021414118,0.00017331395,0.00035789594,0.000095580835,0.00020873318,0.0018200185],"category_scores_gemma":[0.0001604572,0.00015844317,0.00017297006,0.0001889327,0.00024379542,0.0001805864,0.00019439378,0.00054526416,0.00041182787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001386066,0.000028751725,0.0013995039,0.0000461107,0.000004098764,0.0000462684,0.00004639185,0.000036557292,0.9967525,0.00013880937,0.00019635427,0.0011660813],"study_design_scores_gemma":[0.000037736972,0.00038810645,0.043303106,0.000012749845,0.00002013291,0.00028334436,0.0002698274,0.001927666,0.94606215,0.00012956155,0.0075575043,0.000008011435],"about_ca_topic_score_codex":0.0013069143,"about_ca_topic_score_gemma":0.0016991665,"teacher_disagreement_score":0.0018200185,"about_ca_system_score_codex":0.0003050155,"about_ca_system_score_gemma":0.0003077108,"threshold_uncertainty_score":0.0060886145},"labels":[],"label_agreement":null},{"id":"W4412629033","doi":"10.1002/path.6447","title":"Elevated <scp>NPM1</scp> and <scp>FBL</scp> expression correlates with prostate cancer aggressiveness and progression","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Congressionally Directed Medical Research Programs","keywords":"Nucleolus; Ribosome biogenesis; Fibrillarin; Gene silencing; Biology; Prostate cancer; Cancer research; Nucleophosmin; Cell biology; Cancer; Ribosome; RNA; Genetics; Nucleus; Gene","score_opus":0.005948173246694761,"score_gpt":0.2647172193535036,"score_spread":0.25876904610680884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412629033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99581534,0.0016979781,0.0011973206,0.00007970556,0.000009343409,0.000010497675,0.00044064212,0.00006628847,0.00068284024],"genre_scores_gemma":[0.9972734,0.0005150114,0.000770006,0.000035413148,0.000010226266,0.0000190166,0.0004864801,0.000011444511,0.00087899464],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998907,0.000010118983,0.000006626869,0.000030011277,0.0000418514,0.000020698984],"domain_scores_gemma":[0.9998223,0.000017068372,0.00008784751,0.000008009205,0.000016426553,0.000048317354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000803635,0.00019055863,0.00016450766,0.00038035633,0.00020007735,0.0002977006,0.00009677345,0.0002484214,0.0014411975],"category_scores_gemma":[0.00016325364,0.00011359136,0.00017069138,0.00024072846,0.00026800815,0.00011644891,0.00014836875,0.0004147589,0.0002216891],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020581702,0.0000169059,0.012065632,0.000051141455,0.000029294777,0.00030145314,0.00003652469,0.00006835407,0.9842933,0.00008706808,0.00016332259,0.0026812337],"study_design_scores_gemma":[0.000023709377,0.00023798281,0.5685134,0.000017540917,0.00008562456,0.006941366,0.0001446778,0.0019539637,0.41572458,0.00022557365,0.0061121495,0.000019428917],"about_ca_topic_score_codex":0.001185901,"about_ca_topic_score_gemma":0.0012109511,"teacher_disagreement_score":0.0014411975,"about_ca_system_score_codex":0.00025122223,"about_ca_system_score_gemma":0.00016185973,"threshold_uncertainty_score":0.0048213005},"labels":[],"label_agreement":null},{"id":"W4412752683","doi":"10.1002/path.6460","title":"The importance of tumor microenvironment modulations in the progression of pancreatic intraductal papillary mucinous neoplasms<sup>†</sup>","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pancreas Centre (Canada)","funders":"Fondazione Italiana per la ricerca sulle Malattie del Pancreas","keywords":"Tumor microenvironment; Pancreatic cancer; Dysplasia; Pancreas; Intraductal papillary mucinous neoplasm; Pancreatic Intraepithelial Neoplasia; Pathology; Tumor progression; Medicine; Cancer research; Cancer; Immune system; Internal medicine; Immunology; Pancreatic ductal adenocarcinoma","score_opus":0.01486777064421371,"score_gpt":0.31864309987339284,"score_spread":0.30377532922917916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412752683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9113215,0.0705731,0.0030723603,0.0035451541,0.0006335151,0.000046720383,0.00036027338,0.00014806728,0.010299272],"genre_scores_gemma":[0.987502,0.009304019,0.00083356356,0.0004674151,0.0001672409,0.000013010253,0.00014602934,0.0000101253045,0.0015566216],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987173,0.000035347235,0.000013903709,0.00002817697,0.000024526049,0.000026273745],"domain_scores_gemma":[0.99986875,0.000028883098,0.000045253877,0.000011943845,0.00001921885,0.000025946925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030878227,0.00012529043,0.0001277375,0.00020268119,0.000116812036,0.000763743,0.000106176165,0.00027035,0.0009744453],"category_scores_gemma":[0.00029939876,0.00008424664,0.00014616121,0.00016230143,0.00030440863,0.00038587555,0.0002508615,0.00038231505,0.00034223602],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003711373,0.00016165593,0.084785335,0.001308072,0.000100679215,0.005064577,0.00063544844,0.0006886451,0.6460028,0.003302541,0.0069781234,0.2472607],"study_design_scores_gemma":[0.000086939865,0.001317654,0.6415407,0.00024294408,0.00017303647,0.014347008,0.0011332983,0.0029505475,0.21801041,0.0026077498,0.1175341,0.000055554337],"about_ca_topic_score_codex":0.00035102508,"about_ca_topic_score_gemma":0.00041945395,"teacher_disagreement_score":0.0009744453,"about_ca_system_score_codex":0.00025488026,"about_ca_system_score_gemma":0.00027604867,"threshold_uncertainty_score":0.0032598376},"labels":[],"label_agreement":null},{"id":"W4412990425","doi":"10.1002/path.6456","title":"Revisionist history uncovers a simplified molecular‐based classification of differentiated thyroid cancer","year":2025,"lang":"en","type":"review","venue":"The Journal of Pathology","topic":"Thyroid Cancer Diagnosis and Treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"","keywords":"Pathological; Thyroid cancer; Atypia; Thyroid; Thyroid tumors; Pathology; Medicine; Internal medicine","score_opus":0.05910775638288848,"score_gpt":0.367332019616134,"score_spread":0.3082242632332455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412990425","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00030825625,0.9900538,0.00056752394,0.005861146,0.0016689042,0.0000063200023,0.000044734457,0.000020814014,0.0014684731],"genre_scores_gemma":[0.004636157,0.9872974,0.0010452257,0.0042237397,0.0016732039,0.000012043581,0.00011762567,0.000014204711,0.0009803593],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99891186,0.00028120767,0.00022106581,0.00020374861,0.00032499686,0.000057231253],"domain_scores_gemma":[0.9954549,0.0021093914,0.0002798318,0.0001510436,0.0018697237,0.00013513223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003494484,0.00051394105,0.0011607065,0.0042500603,0.00046668277,0.0016338036,0.0012892068,0.0014411838,0.0017173772],"category_scores_gemma":[0.0067659817,0.00031138735,0.0007165693,0.0025344107,0.0016808169,0.0026719968,0.0010044058,0.003952121,0.0015430548],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071943425,0.000019800584,0.000606046,0.014348555,0.00010584867,0.00035162465,0.00044453674,0.00034985572,0.00085506786,0.01683354,0.07670631,0.8893069],"study_design_scores_gemma":[0.000008216407,0.000043314707,0.0011698463,0.0067252666,0.00009429537,0.0019902783,0.00019406235,0.00009453551,0.00021773201,0.004392994,0.98504096,0.000028461796],"about_ca_topic_score_codex":0.00290396,"about_ca_topic_score_gemma":0.004228974,"teacher_disagreement_score":0.0042500603,"about_ca_system_score_codex":0.0021708638,"about_ca_system_score_gemma":0.0026704827,"threshold_uncertainty_score":0.018480837},"labels":[],"label_agreement":null},{"id":"W4413137401","doi":"10.1002/path.6462","title":"<scp>STING</scp> inhibition alleviates experimental peritoneal damage: potential therapeutic relevance for peritoneal dialysis","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Instituto de Salud Carlos III; Comunidad de Madrid","keywords":"Peritoneal dialysis; Medicine; Sting; Clinical significance; Intensive care medicine; Surgery; Internal medicine; Engineering","score_opus":0.010684515043813899,"score_gpt":0.29516917894917016,"score_spread":0.28448466390535626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413137401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97899014,0.009094132,0.005394794,0.00071937445,0.00027178324,0.0001364851,0.001089076,0.00044619295,0.0038580159],"genre_scores_gemma":[0.9874134,0.004927299,0.0032590232,0.00030876166,0.00008420812,0.00013827835,0.001075515,0.00003621926,0.0027573125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999263,0.000016285747,0.0000081446715,0.000011267023,0.000017442157,0.00002065699],"domain_scores_gemma":[0.9999441,0.000006456058,0.000019896339,0.000005860787,0.000006097766,0.000017623986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015024029,0.00043290894,0.00033356296,0.00023322855,0.00015122755,0.00023731693,0.00018107488,0.000261355,0.0016924477],"category_scores_gemma":[0.00009734553,0.00008254894,0.00031028021,0.00015870461,0.00027960708,0.00020530267,0.00012505375,0.0011133772,0.00027315336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011588982,0.00020645639,0.00018315669,0.00022914857,0.000023280763,0.00010600984,0.000010742084,0.00019681784,0.9887116,0.00028367565,0.0004884323,0.008401666],"study_design_scores_gemma":[0.00036252322,0.0031562115,0.006119044,0.00004875374,0.00007315789,0.00061094057,0.000036787813,0.0017727009,0.97606725,0.00024481895,0.011490795,0.000016926064],"about_ca_topic_score_codex":0.0003066568,"about_ca_topic_score_gemma":0.0005911925,"teacher_disagreement_score":0.0016924477,"about_ca_system_score_codex":0.00022968074,"about_ca_system_score_gemma":0.00026130938,"threshold_uncertainty_score":0.0056617856},"labels":[],"label_agreement":null},{"id":"W4413431855","doi":"10.1002/path.6466","title":"<scp><i>APC</i></scp>‐related multiple salivary gland lesions: spatial transcriptomic analysis reveals progressive <scp>WNT</scp> activation","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Hôtel-Dieu de Québec; McGill University; Centre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-Jean; Université Laval; Jewish General Hospital","funders":"Instituto de Salud Carlos III; Canadian Institutes of Health Research; Merck Canada; GlaxoSmithKline; Pfizer; Institut de recherche, Centre universitaire de santé McGill","keywords":"Transcriptome; Wnt signaling pathway; Salivary gland; Cell biology; Biology; Medicine; Pathology; Signal transduction; Genetics; Gene expression; Gene","score_opus":0.01427140313771744,"score_gpt":0.2836650359885015,"score_spread":0.26939363285078405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413431855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99656445,0.00055334624,0.0008595125,0.00009911504,0.0000074543004,0.000011762912,0.0010492697,0.00005580567,0.00079927716],"genre_scores_gemma":[0.9960672,0.00038531778,0.0013268088,0.00006800495,0.000008475721,0.000010749073,0.0011415402,0.000020965934,0.0009708826],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998758,0.000007740626,0.0000097172015,0.00004029589,0.00003964355,0.000026668116],"domain_scores_gemma":[0.9998584,0.000025785524,0.00005101636,0.000011698319,0.000018166516,0.00003502476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006447632,0.00026957577,0.00016169097,0.0005201668,0.00017504534,0.00035882863,0.000094399125,0.0003702256,0.0015569503],"category_scores_gemma":[0.0001917978,0.00010883152,0.00018897666,0.00036017795,0.00023106804,0.00008972939,0.0001627693,0.0002466017,0.0005541304],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001858779,0.000016489548,0.018080862,0.00005340209,0.000022153716,0.006095789,0.0000795352,0.00008383864,0.97064227,0.000053713455,0.00019686691,0.004489362],"study_design_scores_gemma":[0.000021111346,0.00026346798,0.6859571,0.000023771556,0.0001265728,0.060734488,0.00038003668,0.00181616,0.24348152,0.00027126036,0.0069013606,0.00002328209],"about_ca_topic_score_codex":0.0013507806,"about_ca_topic_score_gemma":0.0017244903,"teacher_disagreement_score":0.0015569503,"about_ca_system_score_codex":0.00017023043,"about_ca_system_score_gemma":0.00013605645,"threshold_uncertainty_score":0.005208552},"labels":[],"label_agreement":null},{"id":"W4415429036","doi":"10.1002/path.6493","title":"Metamorphoses in pancreatic cancer precursors: the role of simple mucinous cysts <sup>†</sup>","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pancreas Centre (Canada)","funders":"Niilo Helanderin Säätiö; Fondazione Nadia Valsecchi; European Commission","keywords":"Pathological; Pancreatic ductal adenocarcinoma; Pancreatic cancer; Pancreas; Cyst; Adenocarcinoma; Intraductal papillary mucinous neoplasm; Pancreatic cyst","score_opus":0.02118233982520346,"score_gpt":0.34745213463686747,"score_spread":0.326269794811664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415429036","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.016202586,0.76864624,0.0027354462,0.15291493,0.04276093,0.000037990078,0.00015746885,0.00010289663,0.016441531],"genre_scores_gemma":[0.12620087,0.7012814,0.0026181238,0.058845755,0.08754306,0.000060495,0.00020873534,0.00008225232,0.023159193],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9995029,0.00016507324,0.00006987603,0.00008053249,0.00012538413,0.000056264347],"domain_scores_gemma":[0.9985305,0.000712599,0.00018194536,0.000054963206,0.00037881272,0.00014112885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010763495,0.00021865155,0.0004092728,0.00058710773,0.00036183247,0.0017463978,0.00066741754,0.002367538,0.001736969],"category_scores_gemma":[0.0027722043,0.00013141481,0.00027322184,0.00030868573,0.0016477094,0.0016110583,0.00085909094,0.0022807808,0.00084227184],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062382966,0.000039981634,0.010623835,0.005056117,0.000098000375,0.015278315,0.0017078951,0.00045394848,0.021005465,0.039603826,0.33485734,0.5706514],"study_design_scores_gemma":[0.000019459038,0.00016631355,0.0076849377,0.0012524485,0.00004096677,0.018556025,0.00092115055,0.00027584843,0.004039787,0.0093290415,0.9576661,0.000047800644],"about_ca_topic_score_codex":0.0008559598,"about_ca_topic_score_gemma":0.001947757,"teacher_disagreement_score":0.002367538,"about_ca_system_score_codex":0.00069958717,"about_ca_system_score_gemma":0.00077384204,"threshold_uncertainty_score":0.0058107376},"labels":[],"label_agreement":null},{"id":"W4416386130","doi":"10.1002/path.70001","title":"Papillary renal cell carcinoma with high‐ <scp>ABCC2</scp> shows an immune‐evasive profile associated with favorable response to immunotherapy","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Renal cell carcinoma treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary; University of Toronto; University Health Network; Public Health Ontario; Ontario Institute for Cancer Research; Toronto Public Health; St. Michael's Hospital","funders":"Kidney Foundation of Canada; Ontario Institute for Cancer Research","keywords":"Immunotherapy; Immune system; Immune checkpoint; Immunohistochemistry; Tumor microenvironment; Renal cell carcinoma; Papillary renal cell carcinomas; Clear cell renal cell carcinoma; PD-L1","score_opus":0.010764040911601809,"score_gpt":0.2411945603048424,"score_spread":0.2304305193932406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416386130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994843,0.000084578416,0.00013837572,0.000009799631,0.0000011694538,0.0000034251188,0.000051506373,0.000004759875,0.00022203132],"genre_scores_gemma":[0.9996886,0.000027740178,0.000079284546,0.0000073067545,0.0000036046677,0.0000025420923,0.00011256512,0.0000017363458,0.0000766191],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998271,0.000023923934,0.0000131907,0.000044322303,0.000057671117,0.000033729248],"domain_scores_gemma":[0.99973017,0.00005812385,0.00008021022,0.000041410927,0.000044659297,0.00004539789],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022487796,0.00010393021,0.0002661445,0.00043334227,0.00024678707,0.00033452566,0.000081379134,0.00013680382,0.00089896796],"category_scores_gemma":[0.0004957826,0.00008338011,0.00016111291,0.00039107073,0.00023293034,0.00011095514,0.00016525459,0.00017931977,0.00014110883],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049056835,0.000038613023,0.90462625,0.000027928201,0.00007096037,0.0011763853,0.00007512026,0.0001291351,0.0848795,0.000060821414,0.00016044326,0.008264285],"study_design_scores_gemma":[0.0000081014405,0.00011695667,0.9898553,0.0000016362198,0.000027955793,0.0034881316,0.00006456054,0.0003743734,0.005645901,0.0000403691,0.00037417744,0.0000025832464],"about_ca_topic_score_codex":0.001356405,"about_ca_topic_score_gemma":0.0016194199,"teacher_disagreement_score":0.001356405,"about_ca_system_score_codex":0.0002203856,"about_ca_system_score_gemma":0.00020127036,"threshold_uncertainty_score":0.0030072927},"labels":[],"label_agreement":null},{"id":"W4416838157","doi":"10.1002/path.6486","title":"Small cell neuroendocrine carcinoma of the cervix: diagnostic challenges and emerging molecular insights <sup>†</sup>","year":2025,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Neuroendocrine Tumor Research Advances","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Terry Fox Research Institute","keywords":"Malignancy; Small Cell Lung Carcinoma; Small-cell carcinoma; Pathological; Transcriptome; Neuroendocrine tumors; Carcinoma; Molecular pathology","score_opus":0.021061583327732353,"score_gpt":0.27880879191145624,"score_spread":0.2577472085837239,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416838157","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0026870228,0.2091422,0.0022371481,0.6002061,0.17897499,0.000030318924,0.0002128413,0.000119776414,0.0063896067],"genre_scores_gemma":[0.027731596,0.2667857,0.0029004903,0.29299897,0.39842215,0.0000538919,0.00026667374,0.00007983925,0.010760592],"study_design_codex":"not_applicable","study_design_gemma":"case_report","domain_scores_codex":[0.99890554,0.00033621278,0.00017411767,0.00016775822,0.00034431502,0.00007208299],"domain_scores_gemma":[0.9958567,0.0022980208,0.00022519282,0.00009667225,0.0012235969,0.0002997311],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018941857,0.00037522483,0.00073175406,0.00072245725,0.00070967484,0.0020114542,0.0011120929,0.004296219,0.001636585],"category_scores_gemma":[0.006582521,0.00027704187,0.00045810718,0.0005178375,0.0018715193,0.0018115676,0.00056519895,0.005706773,0.0016842377],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014181218,0.00001355715,0.0016267797,0.001257359,0.000057103538,0.0051591923,0.00023800496,0.00022707363,0.0020982372,0.0041479836,0.8381208,0.1469121],"study_design_scores_gemma":[0.000020637806,0.000055682558,0.0019363544,0.0009161029,0.00003524971,0.008057506,0.0003894,0.00037322714,0.0007732037,0.0044475202,0.9829547,0.000040350296],"about_ca_topic_score_codex":0.0027813246,"about_ca_topic_score_gemma":0.008724765,"teacher_disagreement_score":0.004296219,"about_ca_system_score_codex":0.0015132343,"about_ca_system_score_gemma":0.0016847854,"threshold_uncertainty_score":0.010979295},"labels":[],"label_agreement":null}]}