{"meta":{"query_hash":"5d296dc7f012","filters":{"venue":"The Open Biochemistry Journal"},"cohort_total":6,"direct_labels_cover":0,"predictions_cover":6,"exported":6,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/5d296dc7f012","api":"https://metacan.xera.ac/api/v1/cohort?venue=The+Open+Biochemistry+Journal"},"results":[{"id":"W1526808339","doi":"10.2174/1874091x01509010042","title":"The Optimization of Soluble PTEN Expression in Escherichia coli","year":2015,"lang":"en","type":"article","venue":"The Open Biochemistry Journal","topic":"PI3K/AKT/mTOR signaling in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Innovation Cluster (Canada); University of Saskatchewan","funders":"National Natural Science Foundation of China","keywords":"PTEN; lac operon; Suppressor; Escherichia coli; Gene; Phosphatase; Biology; Function (biology); Tumor suppressor gene; Fusion protein; Cancer research; Biochemistry; Carcinogenesis; Genetics; Enzyme; Recombinant DNA; Signal transduction","score_opus":0.025629012558234927,"score_gpt":0.2940415335532042,"score_spread":0.2684125209949693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1526808339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9804111,0.004194744,0.0037001676,0.0012661956,0.0005536353,0.00032050067,0.000008037523,0.00000555294,0.009540055],"genre_scores_gemma":[0.9944215,0.0003625996,0.002771673,0.00012423821,0.00034520304,0.000019726016,0.000017540488,0.000021781114,0.0019157489],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989878,0.00011180486,0.00030487642,0.0001669898,0.00021497993,0.0002135694],"domain_scores_gemma":[0.9989998,0.000023654538,0.00027540498,0.0004114672,0.00019173112,0.000097961645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011864086,0.000119098855,0.0001236933,0.000010614427,0.00017721165,0.00013585112,0.0011268157,0.000118500364,0.000032007938],"category_scores_gemma":[0.00023118517,0.00007224613,0.00005264425,0.00011000265,0.00013439474,0.00000993482,0.00040069144,0.00021796382,0.0000017527104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031182243,0.0000376026,0.00034429622,0.000004926052,0.000024297951,0.0000018011672,0.00007366804,0.010957544,0.9709984,0.0000037715786,0.016883155,0.00035872037],"study_design_scores_gemma":[0.00085612724,0.00007872239,0.0000384288,0.000056556088,0.000009828744,0.00004206856,0.0003851721,0.0007866691,0.9871417,0.00012434539,0.010367887,0.000112468224],"about_ca_topic_score_codex":0.000018912744,"about_ca_topic_score_gemma":0.0000052883693,"teacher_disagreement_score":0.016143331,"about_ca_system_score_codex":0.000049050886,"about_ca_system_score_gemma":0.00039604685,"threshold_uncertainty_score":0.29461116},"labels":[],"label_agreement":null},{"id":"W1972915658","doi":"10.2174/1874091x01206010031","title":"Effects of Nerve Growth Factor and Nitric Oxide Synthase Inhibitors on Amyloid Precursor Protein mRNA Levels and Protein Stability","year":2012,"lang":"en","type":"article","venue":"The Open Biochemistry Journal","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Nerve growth factor; Cycloheximide; Nitric oxide synthase; Amyloid precursor protein; Nitric oxide; Messenger RNA; Internal medicine; Chemistry; Endocrinology; Biology; Protein biosynthesis; Biochemistry; Medicine; Receptor","score_opus":0.030867465997886378,"score_gpt":0.30128692051489425,"score_spread":0.2704194545170079,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972915658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924447,0.0048801443,0.0000023976088,0.0002976614,0.0000118618655,0.0019788018,0.000062654915,0.000007893973,0.00031390088],"genre_scores_gemma":[0.9994265,0.000034559453,0.00018008446,0.000015806498,0.00012724083,0.00009731799,0.0000048023094,0.000020091536,0.000093628965],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985238,0.00017961048,0.0002675382,0.00021324988,0.00042553974,0.00039029412],"domain_scores_gemma":[0.99858314,0.00013593315,0.00019981933,0.00025112258,0.00012770847,0.000702302],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005444763,0.00021751676,0.00031467894,0.000042328804,0.00019881235,0.00008930737,0.0001948002,0.00008575603,0.00007848877],"category_scores_gemma":[0.0005371681,0.00012820428,0.000073910414,0.0001268395,0.0002340078,0.0001963969,0.0001997509,0.00040419053,0.0000050238436],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018142055,0.0013078627,0.033501014,0.0008052999,0.0014297988,0.00007590873,0.00013832975,1.37151615e-8,0.95941037,0.0000099085055,0.0001001524,0.0014071531],"study_design_scores_gemma":[0.002314579,0.00028678993,0.07372753,0.0005941817,0.0001917071,0.00016875203,0.00008635825,0.0000014697781,0.9223772,0.00012990534,0.0000069664516,0.000114553186],"about_ca_topic_score_codex":0.000049501148,"about_ca_topic_score_gemma":2.2332017e-7,"teacher_disagreement_score":0.040226523,"about_ca_system_score_codex":0.000094117444,"about_ca_system_score_gemma":0.00022635175,"threshold_uncertainty_score":0.5228019},"labels":[],"label_agreement":null},{"id":"W2064113929","doi":"10.2174/1874091x01206010103","title":"Transcriptional and Secretomic Profiling of Epidermal Cells Exposed to Alpha Particle Radiation","year":2012,"lang":"en","type":"article","venue":"The Open Biochemistry Journal","topic":"Effects of Radiation Exposure","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Department of National Defence; Defence Research and Development Canada; Health Canada","funders":"","keywords":"Gene expression; Gene; Alpha particle; Gene expression profiling; Fold change; Biology; Microarray; Molecular biology; Genetics; Physics","score_opus":0.022229134137551305,"score_gpt":0.2960392888083124,"score_spread":0.2738101546707611,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064113929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99537873,0.0009348269,0.0002554087,0.0025685872,0.00010575719,0.00033486963,0.000008723538,0.0000065184954,0.0004065805],"genre_scores_gemma":[0.99642044,0.000037998107,0.0024595074,0.0004219499,0.00040777706,0.000008938235,0.000008167414,0.000011791227,0.00022340166],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915254,0.000065995075,0.0002699087,0.000094013325,0.00020890876,0.00020861345],"domain_scores_gemma":[0.999281,0.00007836784,0.00013716599,0.0001530275,0.000073159514,0.00027730755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009824146,0.00009145708,0.00016756462,0.000020352061,0.000101240425,0.000047034293,0.00016159522,0.000053658136,0.0001689259],"category_scores_gemma":[0.00011247752,0.000065796565,0.00004921579,0.000087223285,0.000047577378,0.00020220545,0.000037551854,0.00018728686,0.0000095236155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021441664,0.000066147244,0.01206675,0.000038047114,0.00004377939,0.000001954476,0.000572911,0.000022964423,0.9834847,0.00004207516,0.0007138601,0.0027324075],"study_design_scores_gemma":[0.0010196716,0.00011380492,0.016839305,0.000047914695,0.000063630876,0.0004064041,0.0002708322,0.00023694886,0.98051244,0.000023528828,0.00039221262,0.0000732807],"about_ca_topic_score_codex":0.0000031153663,"about_ca_topic_score_gemma":1.1122585e-7,"teacher_disagreement_score":0.0047725565,"about_ca_system_score_codex":0.000049800372,"about_ca_system_score_gemma":0.00009907159,"threshold_uncertainty_score":0.2683106},"labels":[],"label_agreement":null},{"id":"W2114709091","doi":"10.2174/1874091x01408010001","title":"Unique Photobleaching Phenomena of the Twin-Arginine Translocase Respiratory Enzyme Chaperone DmsD","year":2014,"lang":"en","type":"article","venue":"The Open Biochemistry Journal","topic":"Redox biology and oxidative stress","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Photobleaching; Chaperone (clinical); Biophysics; Biochemistry; Translocase; Fluorescence recovery after photobleaching; Protein folding; Arginine; Chemistry; Cytoplasm; Tryptophan; Biology; Amino acid; Fluorescence; Membrane; Chromosomal translocation","score_opus":0.014786661321543802,"score_gpt":0.2690426060103004,"score_spread":0.25425594468875656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114709091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98421687,0.0011219289,0.00086709013,0.00077091256,0.00016796343,0.00023416248,0.000025004234,0.0000045380943,0.012591533],"genre_scores_gemma":[0.99680895,0.00010075671,0.00017701711,0.0009138885,0.0005624598,0.000012469839,0.000015637846,0.000021193788,0.0013876143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847406,0.00042151037,0.00037463324,0.0002833868,0.00015565661,0.0002907559],"domain_scores_gemma":[0.9987035,0.000041667772,0.0003390362,0.0006995175,0.000110921326,0.000105368774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013545993,0.00021580627,0.0002283335,0.00001597934,0.0004423034,0.00006114419,0.0016918575,0.00018422701,0.00012399322],"category_scores_gemma":[0.0001688096,0.00012268129,0.00015559321,0.00010383107,0.00045594355,0.000009492382,0.0004008733,0.00049178785,0.0000028059626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001990886,0.000056872388,0.0005398674,0.000014541988,0.00009194591,0.00000177255,0.000099448785,0.0000494226,0.99487734,0.000091476104,0.0019313258,0.002046886],"study_design_scores_gemma":[0.00085769774,0.00017733051,0.00067163317,0.000057028188,0.000029927449,0.00015638316,0.00018792365,0.000022421646,0.9505063,0.00014670916,0.047018416,0.00016821914],"about_ca_topic_score_codex":0.000014858658,"about_ca_topic_score_gemma":0.000008234616,"teacher_disagreement_score":0.04508709,"about_ca_system_score_codex":0.000017407569,"about_ca_system_score_gemma":0.00016414515,"threshold_uncertainty_score":0.5002798},"labels":[],"label_agreement":null},{"id":"W2132266700","doi":"10.2174/1874091x00802010006","title":"Heparin Alters Viral Serpin, Serp-1, Anti-Thrombolytic Activity to Anti-Thrombotic Activity","year":2008,"lang":"en","type":"article","venue":"The Open Biochemistry Journal","topic":"Protease and Inhibitor Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Viron Therapeutics (Canada)","funders":"","keywords":"Serpin; Heparin cofactor II; Thrombin; Serine protease; Heparin; Protease; Chemistry; Coagulation; Biochemistry; Platelet activation; Cell biology; Pharmacology; Biology; Antithrombin; Platelet; Immunology; Enzyme; Medicine; Internal medicine","score_opus":0.02295548074619776,"score_gpt":0.281179796290158,"score_spread":0.25822431554396025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132266700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948874,0.00016527816,0.001104119,0.0010894673,0.00036441753,0.00050641934,0.000030062522,0.000019337731,0.0018334722],"genre_scores_gemma":[0.99644053,0.00024634166,0.00047612638,0.000772815,0.00085099874,0.000028249375,0.000018765837,0.00005264335,0.0011135021],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977908,0.00018545384,0.0003216036,0.00062555866,0.00039235948,0.00068421144],"domain_scores_gemma":[0.9981983,0.000017378912,0.00027370264,0.0009394177,0.00013819907,0.00043303132],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006547979,0.00041199656,0.00044454928,0.000040058323,0.00090650836,0.0002457053,0.0015271489,0.00025037795,0.00011910462],"category_scores_gemma":[0.00012355931,0.00032505955,0.00023294588,0.0001942125,0.00019955392,0.000048754908,0.0010286146,0.000559802,0.0000662035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020279069,0.00021339,0.00036162685,0.000016266324,0.00013522594,0.000051861305,0.000056911093,0.00007711855,0.9897784,0.000004683326,0.008167877,0.00093384704],"study_design_scores_gemma":[0.0007692479,0.00030217564,0.002777432,0.00005601176,0.00003945569,0.001652535,0.000046217312,0.00007479675,0.9913062,0.000080083424,0.0024330209,0.00046281924],"about_ca_topic_score_codex":0.000087176646,"about_ca_topic_score_gemma":0.0000050066315,"teacher_disagreement_score":0.005734856,"about_ca_system_score_codex":0.00009714312,"about_ca_system_score_gemma":0.00048185972,"threshold_uncertainty_score":0.9999201},"labels":[],"label_agreement":null},{"id":"W2148799552","doi":"10.2174/1874091x01206010016","title":"Effects of α-Particle Radiation on MicroRNA Responses in Human Cell-Lines","year":2012,"lang":"en","type":"article","venue":"The Open Biochemistry Journal","topic":"Radioactivity and Radon Measurements","field":"Health Professions","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"microRNA; Cell culture; Gene expression; Biology; Gene; Cell; Cell biology; Computational biology; Genetics; Cancer research","score_opus":0.07292723054789568,"score_gpt":0.4225416823693239,"score_spread":0.3496144518214282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148799552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955498,0.0006404956,0.000008190833,0.0007201425,0.00027110387,0.00033810321,0.0000023877158,0.000004490988,0.002465281],"genre_scores_gemma":[0.99701905,0.000077537916,0.000046176872,0.00021442356,0.00040563932,0.0000171941,0.0000012261295,0.000010569425,0.0022081719],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99831015,0.0007358463,0.0003464434,0.00008406599,0.00020315986,0.00032033472],"domain_scores_gemma":[0.99887955,0.00043723616,0.0003350187,0.00019258598,0.00004647266,0.00010912662],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023192384,0.00009254739,0.00016406577,0.000028512874,0.000574947,0.000018570716,0.00039132478,0.00009364501,0.000109441724],"category_scores_gemma":[0.00027024958,0.00006131514,0.000040875344,0.00011722788,0.00004577972,0.00015799253,0.00007625695,0.00058181,0.000028675742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003178089,0.00028989578,0.030471804,0.000096252785,0.0000143830985,0.0000024370113,0.0012518115,0.0000037841348,0.9645088,0.000020342984,0.002562335,0.00046034984],"study_design_scores_gemma":[0.001436518,0.000044389628,0.07850946,0.00023810974,0.000016354052,0.0000079171305,0.00049746706,0.000004377623,0.9185717,0.00003411477,0.00057151174,0.00006808448],"about_ca_topic_score_codex":0.000045036617,"about_ca_topic_score_gemma":0.0000022428474,"teacher_disagreement_score":0.048037652,"about_ca_system_score_codex":0.00013003079,"about_ca_system_score_gemma":0.00012461387,"threshold_uncertainty_score":0.44220853},"labels":[],"label_agreement":null}]}