{"meta":{"query_hash":"5d1ed3d7b88b","filters":{"venue":"Trends in Microbiology"},"cohort_total":194,"direct_labels_cover":0,"predictions_cover":194,"exported":194,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/5d1ed3d7b88b","api":"https://metacan.xera.ac/api/v1/cohort?venue=Trends+in+Microbiology"},"results":[{"id":"W1962896198","doi":"10.1016/j.tim.2015.10.009","title":"Small Molecules Take A Big Step Against Clostridium difficile","year":2015,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Biology; Clostridium difficile; Microbiology; Clostridium; Computational biology; Bacteria; Antibiotics; Genetics","score_opus":0.07011130561242966,"score_gpt":0.3020220676076355,"score_spread":0.23191076199520583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1962896198","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2751823,0.008385914,0.000034052322,0.66127557,0.0034013626,0.0016751515,0.0035142058,0.000543516,0.045987897],"genre_scores_gemma":[0.042449757,0.002563989,0.0022968713,0.6974783,0.028797708,0.000656284,0.079764955,0.0012793113,0.14471285],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9942848,0.0004688178,0.001213464,0.0016301601,0.00038297623,0.0020197916],"domain_scores_gemma":[0.99720615,0.00025846524,0.0003318477,0.0015247643,0.00037296076,0.00030582907],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0005046073,0.0010974624,0.0020233528,0.002276728,0.00008874887,0.000057977697,0.00081767194,0.0031443525,0.000759606],"category_scores_gemma":[0.00022748265,0.0009872754,0.00060377753,0.0013161736,0.0005754829,0.000024102907,0.0005011364,0.005700759,0.0006807983],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033513954,0.00026062955,0.00005567291,0.00022723032,0.00022597122,0.005093736,0.00008098871,0.0000094566385,0.0968069,0.0000042100623,0.8682142,0.028685894],"study_design_scores_gemma":[0.0038239586,0.0008321744,0.000026048125,0.00030322484,0.00019035296,0.00075005897,0.000065411536,0.00007798133,0.026291957,0.0000098838145,0.9667524,0.0008765292],"about_ca_topic_score_codex":0.0003680828,"about_ca_topic_score_gemma":0.00039742948,"teacher_disagreement_score":0.23273256,"about_ca_system_score_codex":0.001448801,"about_ca_system_score_gemma":0.0011492035,"threshold_uncertainty_score":0.99925774},"labels":[],"label_agreement":null},{"id":"W1963537078","doi":"10.1016/j.tim.2012.04.007","title":"The archaellum: an old motility structure with a new name","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Max-Planck-Gesellschaft","keywords":"Flagellum; Archaea; Biology; Pilus; Confusion; Bacteria; Cilium; Microbiology; Evolutionary biology; Cell biology; Genetics; Gene; Escherichia coli","score_opus":0.011305563122354393,"score_gpt":0.2418199500239054,"score_spread":0.23051438690155102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963537078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982795,0.00090692437,0.00006392538,0.00016900395,0.00013694428,0.00006521331,0.00008210252,0.0000072129783,0.000289143],"genre_scores_gemma":[0.9972751,0.000030340078,0.00043794213,0.00024056507,0.0001863423,0.0000023076327,0.00033734698,0.000008416766,0.001481635],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915475,0.00010673899,0.00010076843,0.00023407568,0.00002324117,0.00038042566],"domain_scores_gemma":[0.9994857,0.00001047874,0.000043346445,0.0003575807,0.000015866723,0.000087079454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013526187,0.00012991448,0.00011195093,0.00003365023,0.0000953344,0.000008342893,0.0002893565,0.0001782205,0.000097892975],"category_scores_gemma":[0.000009858203,0.000087581124,0.000032981523,0.00008359358,0.00022604276,0.0000043320883,0.000119560274,0.00015172643,0.000007478877],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031398147,0.000077674675,0.3799263,0.000004163534,0.000056041674,0.0000022176134,0.00042095495,0.000014518466,0.5999289,0.00034738093,0.0023319407,0.016575882],"study_design_scores_gemma":[0.0018364654,0.0010180902,0.67978066,0.000008058178,0.000035632213,0.00029994926,0.0001867836,0.0000047540357,0.1853119,0.00051406503,0.13051951,0.00048411157],"about_ca_topic_score_codex":0.000113184724,"about_ca_topic_score_gemma":0.0015003433,"teacher_disagreement_score":0.41461703,"about_ca_system_score_codex":0.000013193285,"about_ca_system_score_gemma":0.0000293993,"threshold_uncertainty_score":0.35714546},"labels":[],"label_agreement":null},{"id":"W1964189237","doi":"10.1016/j.tim.2005.10.003","title":"Leaky guts and lipid rafts","year":2005,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; Intestinal epithelium; Immune system; Epithelium; Microbiology; Bacteria; Inflammation; Cell biology; Lipid raft; Intestinal mucosa; Immunology; Genetics; Signal transduction","score_opus":0.010568297651203736,"score_gpt":0.27903241614803953,"score_spread":0.26846411849683577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964189237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944623,0.0017909397,0.000040676754,0.0014603614,0.00014548152,0.000058667796,0.000030588344,0.000013060877,0.0019978925],"genre_scores_gemma":[0.9925709,0.00039766595,0.0014028507,0.0014249098,0.00031809803,0.0000064528367,0.00043962058,0.000016918333,0.0034225888],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989607,0.00006841031,0.00021382509,0.00038407894,0.000013238323,0.00035976656],"domain_scores_gemma":[0.9996425,0.00000775708,0.00004811253,0.00022554141,0.000017102784,0.00005901847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014254286,0.00015127353,0.00018432175,0.00013153306,0.000045356406,0.000007726466,0.00012807453,0.00025404996,0.00013832282],"category_scores_gemma":[0.000010780434,0.0001439,0.000042313615,0.000095083415,0.00012648842,0.0000025286874,0.00011212481,0.00013023514,0.00004592855],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004552225,0.000048151003,0.0039626863,0.0000061771284,0.000010672576,0.0000017592849,0.00006691243,0.0000053293434,0.9623608,0.00006058354,0.009419377,0.024012005],"study_design_scores_gemma":[0.0014045952,0.00028028007,0.024707858,0.000010752733,0.000007814502,0.00024011619,0.0000253234,0.000010600102,0.08100124,0.000012583393,0.892021,0.00027782892],"about_ca_topic_score_codex":0.000022695202,"about_ca_topic_score_gemma":0.0007180004,"teacher_disagreement_score":0.8826016,"about_ca_system_score_codex":0.000019264931,"about_ca_system_score_gemma":0.000028092416,"threshold_uncertainty_score":0.5868072},"labels":[],"label_agreement":null},{"id":"W1964478733","doi":"10.1016/j.tim.2004.08.003","title":"Comparative genomic analysis of Pseudomonas aeruginosa virulence","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Biology; Genome; Comparative genomics; Genomics; Genetics; Pseudomonas aeruginosa; Gene; Computational biology; Virulence; Genome size; Bacteria","score_opus":0.04494456892384106,"score_gpt":0.3494089054097661,"score_spread":0.304464336485925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964478733","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007209165,0.98812395,0.000026173124,0.000012285424,0.00030789812,0.00024007687,0.0009325076,0.000025376456,0.0031225833],"genre_scores_gemma":[0.0051293755,0.9919216,0.0006581257,0.000027664879,0.00001831234,0.00003126312,0.0010674441,0.000020451213,0.0011257326],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980293,0.00020110614,0.0007944296,0.0005961075,0.00003089503,0.0003481932],"domain_scores_gemma":[0.9989295,0.00009394106,0.0005064968,0.0004173658,0.0000061913443,0.00004648637],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012356309,0.0003787105,0.0022479226,0.000757557,0.000040586467,0.000009531902,0.00052108295,0.00032583647,0.00882362],"category_scores_gemma":[0.000003617467,0.00032279012,0.0007273314,0.0018239242,0.00043769868,0.000060424078,0.00029693212,0.0003995639,0.0005879013],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026681962,0.00060430093,0.00013930076,0.00086306117,0.002857565,0.00004417298,0.0010872504,0.0010256362,0.12946817,0.00006442779,0.0013130448,0.8625064],"study_design_scores_gemma":[0.00018388408,0.00006603687,0.0018803008,0.00082037755,0.0026660103,0.00008541764,0.000016807895,0.0000040613018,0.0001578822,0.0000055462842,0.9936688,0.00044485362],"about_ca_topic_score_codex":0.0010014457,"about_ca_topic_score_gemma":0.0024349117,"teacher_disagreement_score":0.99235576,"about_ca_system_score_codex":0.0005849868,"about_ca_system_score_gemma":0.00003417542,"threshold_uncertainty_score":0.9999224},"labels":[],"label_agreement":null},{"id":"W1964495639","doi":"10.1016/j.tim.2004.08.009","title":"Ebola virus ecology: a continuing mystery","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Canadian Science Centre for Human and Animal Health; Health Canada","funders":"","keywords":"Biology; Outbreak; Ebolavirus; Ebola virus; Ecological niche; Transmission (telecommunications); Population; Ecology; Marburg virus; Natural reservoir; Public health; Virology; Zoology; Environmental health; Habitat","score_opus":0.060618559498085735,"score_gpt":0.4079390357718209,"score_spread":0.34732047627373513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964495639","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00039922528,0.99504584,0.0000045269067,0.000056734218,0.00045918045,0.00040568187,0.000114186,0.00006539955,0.00344924],"genre_scores_gemma":[0.00039642907,0.9910671,0.00013123607,0.00008028741,0.00021459055,0.00012886802,0.0008241727,0.000059663827,0.007097635],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99765366,0.00030837758,0.00074553606,0.0005864211,0.00004149114,0.0006644824],"domain_scores_gemma":[0.9991546,0.00013459819,0.00018420913,0.00038496093,0.00004484085,0.00009676006],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00035678767,0.0004144183,0.0023738502,0.0015494492,0.000044075572,0.00001618577,0.00018556288,0.0010126802,0.0011348315],"category_scores_gemma":[0.000046920733,0.00031316688,0.00057261967,0.00074021274,0.00024311138,0.000027226431,0.00016878691,0.0012643533,0.0006689723],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022249762,0.00016201471,0.000029425059,0.0035126482,0.00015829009,0.0003503662,0.000044542365,2.7158728e-7,0.0007857908,0.000043268956,0.0008940557,0.9939971],"study_design_scores_gemma":[0.0009684133,0.00035538795,0.00005109461,0.0077497154,0.00031449305,0.0030108988,0.0000070578894,4.039633e-7,0.00003284084,0.000008932752,0.9872433,0.00025746817],"about_ca_topic_score_codex":0.00014010385,"about_ca_topic_score_gemma":0.00044390312,"teacher_disagreement_score":0.9937396,"about_ca_system_score_codex":0.00058288133,"about_ca_system_score_gemma":0.00026112908,"threshold_uncertainty_score":0.99993205},"labels":[],"label_agreement":null},{"id":"W1966661165","doi":"10.1016/j.tim.2004.07.006","title":"Exploring the boundaries of life","year":2004,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; Genome; Whole genome sequencing; Scopus; Sequence (biology); Computational biology; DNA sequencing; Metagenomics; Genetics; Evolutionary biology; MEDLINE; Gene","score_opus":0.07536422946137898,"score_gpt":0.2364158477658695,"score_spread":0.1610516183044905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966661165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972799,0.00014893565,3.521221e-7,0.0015292751,0.00017343764,0.000022237211,0.000035432888,0.000011511959,0.0007989351],"genre_scores_gemma":[0.9996032,0.000032090225,0.00004893524,0.00015868251,0.00006952615,0.000008471665,0.00002804717,3.3397166e-7,0.000050715116],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99951845,0.000027193248,0.0001503306,0.00011918812,0.000018152035,0.00016666058],"domain_scores_gemma":[0.99984056,0.00004627469,0.000041224353,0.000040080115,0.000012589341,0.000019264151],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009176573,0.0000653872,0.00012928816,0.000014506782,0.00009095184,0.000012200639,0.00016160653,0.00003430724,0.00015562649],"category_scores_gemma":[0.000015213958,0.000019612999,0.000049900995,0.00022516657,0.00019700253,0.00004090431,0.000046680292,0.00007743619,0.000010793829],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024830208,0.000051870273,0.015549376,0.000001866969,0.000007450158,0.0000022810063,0.0005322392,0.000018423676,0.94489837,0.0019999514,0.00018125502,0.03673208],"study_design_scores_gemma":[0.00063683995,0.00039054628,0.6721412,0.000030647414,0.0000101882115,0.000041093303,0.00067817426,0.0000012763345,0.106716625,0.0018078751,0.21725996,0.0002855522],"about_ca_topic_score_codex":0.0001040874,"about_ca_topic_score_gemma":0.0034095563,"teacher_disagreement_score":0.83818173,"about_ca_system_score_codex":0.000011815102,"about_ca_system_score_gemma":0.0000072079774,"threshold_uncertainty_score":0.19026126},"labels":[],"label_agreement":null},{"id":"W1967641122","doi":"10.1016/j.tim.2006.06.006","title":"Safe and efficacious probiotics: what are they?","year":2006,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":91,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"","keywords":"Probiotic; Biology; Intensive care medicine; Product (mathematics); Risk analysis (engineering); Clinical trial; Adverse effect; Set (abstract data type); Business; Bioinformatics; Pharmacology; Medicine; Computer science","score_opus":0.010414089261326805,"score_gpt":0.20870742258821992,"score_spread":0.1982933333268931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967641122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953853,0.0011074743,6.2144386e-7,0.0018634228,0.00015170636,0.00008483298,0.000051090625,0.000037337995,0.0013182012],"genre_scores_gemma":[0.9986685,0.0001517031,0.00011886078,0.00021048594,0.00010297307,0.000003895495,0.00020834354,0.0000011391475,0.00053412025],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99903816,0.00006602425,0.00021386289,0.0003242813,0.000023302453,0.00033434943],"domain_scores_gemma":[0.9997598,0.00005858366,0.00007556841,0.000055731678,0.000016934428,0.00003338173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012290184,0.0001518109,0.00021294509,0.000038533122,0.00008566786,0.00005680908,0.00015616811,0.00018775677,0.00016011296],"category_scores_gemma":[0.000004601676,0.000060435086,0.000047451056,0.00018586863,0.0001219571,0.000069427544,0.0000891336,0.0001449463,0.000023540717],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053266154,0.0002397636,0.012479842,0.0000058846495,0.000011535455,0.000017865013,0.00006123331,0.000012658265,0.8341446,0.0009140544,0.000905049,0.15115425],"study_design_scores_gemma":[0.0019773568,0.0016091366,0.8325112,0.00019935609,0.00004396054,0.00034662551,0.000968288,0.000085544314,0.021982387,0.0051215645,0.13387765,0.0012769678],"about_ca_topic_score_codex":0.00009929384,"about_ca_topic_score_gemma":0.0037402306,"teacher_disagreement_score":0.82003134,"about_ca_system_score_codex":0.000022807824,"about_ca_system_score_gemma":0.0000018985802,"threshold_uncertainty_score":0.24644713},"labels":[],"label_agreement":null},{"id":"W1969350272","doi":"10.1016/j.tim.2011.05.003","title":"Biosensors and their applications in microbial metabolic engineering","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":192,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Biology; Metabolic engineering; Metabolic pathway; Biochemical engineering; Computational biology; Biosensor; Microbial metabolism; Synthetic biology; Biotechnology; Gene; Biochemistry; Bacteria; Engineering; Genetics","score_opus":0.01774320511405564,"score_gpt":0.2602952168193379,"score_spread":0.2425520117052823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969350272","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0047747055,0.9944078,0.00005149856,0.0000048185725,0.00027623458,0.00028067434,0.00013491714,0.000022433864,0.00004697091],"genre_scores_gemma":[0.0014253315,0.996158,0.00043747033,0.00001114637,0.00032348072,0.00010463107,0.0011539413,0.00006239354,0.00032357243],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982487,0.00010038152,0.00051522977,0.00072575506,0.000010605226,0.00039930546],"domain_scores_gemma":[0.9993772,0.00000904906,0.00012738154,0.00042155036,0.000016853983,0.000047990245],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020612247,0.00049162196,0.0010542953,0.00074033067,0.000022453089,0.000010064953,0.0002574587,0.0006788982,0.000015974401],"category_scores_gemma":[0.000021142334,0.00039912542,0.00019543905,0.0005011427,0.00008854228,0.000002850468,0.00014717736,0.00035818462,0.00000858962],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009155713,0.0000883679,0.000015801501,0.0008693374,0.00011476383,0.0000015709835,0.0000721031,0.0000080512045,0.33068642,0.00017357653,0.00017882857,0.667782],"study_design_scores_gemma":[0.00020587837,0.000028689228,0.00002530677,0.0002726762,0.00005513786,0.00017224251,0.000005973988,5.048092e-7,0.004892639,0.0000021368232,0.9939467,0.00039216733],"about_ca_topic_score_codex":0.000038743357,"about_ca_topic_score_gemma":0.0000965823,"teacher_disagreement_score":0.9937678,"about_ca_system_score_codex":0.000021532725,"about_ca_system_score_gemma":0.000035038953,"threshold_uncertainty_score":0.99984604},"labels":[],"label_agreement":null},{"id":"W1973036993","doi":"10.1016/j.tim.2013.05.003","title":"Combating enteropathogenic Escherichia coli (EPEC) infections: the way forward","year":2013,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Enteropathogenic Escherichia coli; Biology; Microbiology; Escherichia coli; Intimin; Virology; Enterobacteriaceae; Genetics; Gene","score_opus":0.012321760135837283,"score_gpt":0.2728606703011301,"score_spread":0.2605389101652928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973036993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947832,0.0010853653,0.00011180238,0.0010918017,0.00019993036,0.00023359887,0.0000171259,0.000020473386,0.0024566539],"genre_scores_gemma":[0.9965064,0.00027120727,0.0005392449,0.00066832115,0.00013758952,0.0002866443,0.000109744054,0.000022398688,0.0014584487],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984927,0.00032494645,0.00027941403,0.00036843127,0.000042769567,0.00049174356],"domain_scores_gemma":[0.9993427,0.00006409681,0.00008432401,0.00038886548,0.000072755785,0.000047266938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032310336,0.00019639477,0.00020862477,0.00010031285,0.0001669539,0.000029533641,0.00034275808,0.00016950208,0.0002146619],"category_scores_gemma":[0.00017279918,0.00014058038,0.00011212176,0.00030316296,0.00029692822,0.0000054707616,0.0004032769,0.00027779432,0.00007602121],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016330583,0.00008835272,0.019369824,0.000006239345,0.0000692614,0.0000013443254,0.00009599217,0.000013973452,0.96703213,0.00007411903,0.008567237,0.0046651945],"study_design_scores_gemma":[0.005297941,0.0033988727,0.28963846,0.00007779508,0.00008983865,0.00020693456,0.001492727,0.0005920763,0.20892797,0.000686856,0.48787493,0.0017155982],"about_ca_topic_score_codex":0.00014179268,"about_ca_topic_score_gemma":0.0007134371,"teacher_disagreement_score":0.75810415,"about_ca_system_score_codex":0.000035159122,"about_ca_system_score_gemma":0.000030139847,"threshold_uncertainty_score":0.57327014},"labels":[],"label_agreement":null},{"id":"W1973807263","doi":"10.1016/j.tim.2014.05.004","title":"Methylocella: a gourmand among methanotrophs","year":2014,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Bacteria; Ecology; Genetics","score_opus":0.013314155404541783,"score_gpt":0.23205214551218833,"score_spread":0.21873799010764655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973807263","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23166662,0.0023993077,0.00021008501,0.41584042,0.004622772,0.00089687126,0.00020743717,0.00032720016,0.34382927],"genre_scores_gemma":[0.04478121,0.00030748465,0.0032983846,0.7616868,0.0023569001,0.00012050688,0.0032150364,0.00029411167,0.18393956],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969549,0.00064590556,0.0005327211,0.0009085315,0.00009786912,0.000860063],"domain_scores_gemma":[0.9988967,0.00016057392,0.00028038007,0.0005938922,0.000005095461,0.00006331516],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.00047418018,0.00050384674,0.0007822747,0.00032284504,0.000061976425,0.000018779145,0.00066956005,0.0017789324,0.019615566],"category_scores_gemma":[0.000013334056,0.00040161578,0.0002019675,0.000490872,0.00060343824,0.000039627186,0.00034044893,0.0024234785,0.002221181],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000959764,0.000023423392,0.0012530368,0.000016574259,0.000058180212,0.00023079009,0.00011901792,0.00025007935,0.01439222,0.0000037536279,0.980957,0.002686336],"study_design_scores_gemma":[0.00046455703,0.0000949113,0.00040388675,0.00002226511,0.00006036594,0.00007872726,0.000002619904,0.00006528596,0.00071213464,0.00029599507,0.99728495,0.00051433174],"about_ca_topic_score_codex":0.00049707876,"about_ca_topic_score_gemma":0.00013074293,"teacher_disagreement_score":0.34584638,"about_ca_system_score_codex":0.00021361522,"about_ca_system_score_gemma":0.0000066944294,"threshold_uncertainty_score":0.999878},"labels":[],"label_agreement":null},{"id":"W1974631785","doi":"10.1016/j.tim.2005.01.008","title":"Insertion of the bacterial type III translocon: not your average needle stick","year":2005,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Virulence; Secretion; Biology; Cytoplasm; Cell biology; Translocon; Membrane protein; Bacteria; Microbiology; Bacterial outer membrane; Membrane; Escherichia coli; Biochemistry; Gene; Genetics","score_opus":0.03365835567034364,"score_gpt":0.3000071985611472,"score_spread":0.26634884289080357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974631785","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.047751997,0.9486922,0.0000077382765,0.00013857157,0.0021853028,0.00043807965,0.00047315628,0.000015530388,0.00029744828],"genre_scores_gemma":[0.021362755,0.9751538,0.00014287909,0.00008861105,0.0005876564,0.00002282137,0.001548635,0.00005015835,0.0010426878],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980581,0.0002486521,0.00074102887,0.0005419355,0.00003619237,0.0003741042],"domain_scores_gemma":[0.99887383,0.000013581504,0.00036684625,0.0006673443,0.000045981567,0.000032408243],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00016720673,0.00040774432,0.0010195017,0.00020626317,0.000038208425,0.000009413809,0.00069113343,0.0016617948,0.00024215263],"category_scores_gemma":[0.000024155106,0.00028870493,0.0003883748,0.0003617935,0.00026093714,0.0000016523442,0.0002675123,0.00038189435,0.000014561042],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009561229,0.00006701083,0.0000029389028,0.00019981377,0.00008372074,0.0000011989681,0.00001587558,0.0000023243233,0.48119724,0.000018895073,0.00040359568,0.5179118],"study_design_scores_gemma":[0.00057700515,0.00028580014,0.000029815508,0.00027336786,0.00013509752,0.00008891662,0.000002931283,4.6618229e-7,0.023886895,0.000002756086,0.97442186,0.00029510597],"about_ca_topic_score_codex":0.000028565904,"about_ca_topic_score_gemma":0.00023576568,"teacher_disagreement_score":0.9740183,"about_ca_system_score_codex":0.000041803454,"about_ca_system_score_gemma":0.00016537186,"threshold_uncertainty_score":0.9999565},"labels":[],"label_agreement":null},{"id":"W1975566317","doi":"10.1016/j.tim.2014.04.010","title":"The gut microbiome, probiotics, bile acids axis, and human health","year":2014,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Pediatric Hepatobiliary Diseases and Treatments","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Bile acid; Microbiome; Gut microbiome; Probiotic; G protein-coupled bile acid receptor; Gut flora; Receptor; Microbiology; Farnesoid X receptor; Biochemistry; Bioinformatics; Bacteria; Nuclear receptor","score_opus":0.013097766596711526,"score_gpt":0.30572274518986775,"score_spread":0.2926249785931562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975566317","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992486,0.0030406169,0.0000058318,0.0028892187,0.00018250731,0.0002678578,0.0000930582,0.000052602903,0.0009822842],"genre_scores_gemma":[0.99614084,0.0004706083,0.00028767387,0.0007255651,0.000111908776,0.00001711326,0.0004460576,0.00001955826,0.0017806704],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986054,0.00015742528,0.0003580706,0.0003679917,0.00003039683,0.000480744],"domain_scores_gemma":[0.99928886,0.00007903931,0.00010020274,0.00036206524,0.000024140085,0.00014569671],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029521878,0.00019177666,0.00037258078,0.00020772625,0.00020393077,0.0000155485,0.00011015414,0.00012112853,0.00008540567],"category_scores_gemma":[0.000024698134,0.00012372891,0.00007940208,0.00025133553,0.00026184303,0.000022704695,0.00008378988,0.00017028485,0.000038874463],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003224357,0.0013312588,0.7509792,0.00019311403,0.0002520901,0.00005133435,0.00035869295,0.0000012635792,0.06267601,0.0013095158,0.05351412,0.12901098],"study_design_scores_gemma":[0.007903754,0.003187882,0.5618503,0.000096519965,0.000156216,0.00052184536,0.00009563513,0.000028431363,0.00089708075,0.00037379377,0.42443308,0.00045544305],"about_ca_topic_score_codex":0.00019976072,"about_ca_topic_score_gemma":0.000485885,"teacher_disagreement_score":0.37091896,"about_ca_system_score_codex":0.00010361207,"about_ca_system_score_gemma":0.00006317363,"threshold_uncertainty_score":0.5045519},"labels":[],"label_agreement":null},{"id":"W1979042139","doi":"10.1016/s0966-842x(03)00155-0","title":"Establishing order for type III secretion substrates – a hierarchical process","year":2003,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Effector; Secretion; Biology; Biogenesis; Flagellum; Type three secretion system; Virulence; Cell biology; Gene; Pathogen; Genetics; Computational biology; Biochemistry","score_opus":0.08647950180296597,"score_gpt":0.33470151293897116,"score_spread":0.24822201113600517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979042139","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011144576,0.98622584,9.371697e-7,0.00007321325,0.0005500731,0.0004561173,0.0010519726,0.000054668282,0.00044261105],"genre_scores_gemma":[0.0003007133,0.9891244,0.00019189421,0.00005526845,0.00025197215,0.00018630945,0.009244435,0.000004542515,0.0006404546],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99802065,0.00025600332,0.00053262897,0.0006235123,0.0000348459,0.0005323895],"domain_scores_gemma":[0.99899286,0.0005734722,0.00024400734,0.000067564055,0.00007630178,0.000045791876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034446706,0.00039031342,0.0012504682,0.000078159675,0.000114962466,0.000042483465,0.00038039286,0.000619195,0.00029817724],"category_scores_gemma":[0.000107367065,0.00014801498,0.00020349363,0.00096736004,0.000108830565,0.000059812777,0.0000656243,0.0003624691,0.000016513328],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003729368,0.00007401508,0.000027175283,0.0006688535,0.00006793817,0.000007653118,0.00004679972,1.9691632e-7,0.009105856,0.00009048472,0.0010249917,0.98884875],"study_design_scores_gemma":[0.00014791149,0.00016230933,0.00004985561,0.00066217274,0.0001041538,0.00014445119,0.000025204168,7.191004e-7,0.000012950025,0.000076406825,0.99825054,0.0003633415],"about_ca_topic_score_codex":0.000017365517,"about_ca_topic_score_gemma":0.0008770778,"teacher_disagreement_score":0.9972255,"about_ca_system_score_codex":0.0000552236,"about_ca_system_score_gemma":0.000041424362,"threshold_uncertainty_score":0.60358757},"labels":[],"label_agreement":null},{"id":"W1980188285","doi":"10.1016/j.tim.2014.01.004","title":"Hiding behind the mycobacterial cell wall","year":2014,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Intracellular; Biology; Immune system; Microbiology; Evasion (ethics); Macrophage; Intracellular parasite; Mechanism (biology); Permissive; Cell; Cell wall; Cell biology; Virology; Immunology; Genetics; In vitro","score_opus":0.030740685857178856,"score_gpt":0.2929476197159121,"score_spread":0.2622069338587332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980188285","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11443552,0.0005503717,0.0000029113094,0.86828053,0.0016472196,0.00041286877,0.00022778766,0.00007709542,0.014365703],"genre_scores_gemma":[0.074523345,0.00032927355,0.00019889965,0.8819509,0.011915288,0.00015197314,0.008585584,0.00013636977,0.022208344],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971975,0.0005036872,0.00049837277,0.00065921125,0.00011798814,0.0010232177],"domain_scores_gemma":[0.99828297,0.00058779574,0.00017890857,0.0008023915,0.00005834543,0.000089593304],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0004466192,0.0004333404,0.0008517044,0.0005785171,0.000078273864,0.000045874414,0.000518782,0.0014194659,0.0044194036],"category_scores_gemma":[0.00009210433,0.0002821845,0.00028059114,0.00019098529,0.00026512015,0.000028530932,0.00019327254,0.0028293396,0.0006209745],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013636515,0.00005114593,0.0022137375,0.0001254869,0.000053412285,0.0004912914,0.000106496445,1.0400451e-7,0.060909107,0.0000022759275,0.93446165,0.0014489137],"study_design_scores_gemma":[0.0014570615,0.0003664457,0.0016815485,0.000101839854,0.00009558842,0.00036729223,0.0000046392315,0.0000021086123,0.0035960926,0.000016496753,0.99203885,0.00027206578],"about_ca_topic_score_codex":0.00025607165,"about_ca_topic_score_gemma":0.0000910096,"teacher_disagreement_score":0.05757716,"about_ca_system_score_codex":0.00017858398,"about_ca_system_score_gemma":0.00011310797,"threshold_uncertainty_score":0.99996305},"labels":[],"label_agreement":null},{"id":"W1982952028","doi":"10.1016/j.tim.2011.11.002","title":"The pig: a model for human infectious diseases","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":1002,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Infectious disease (medical specialty); Biology; Animal model; Disease; Human disease; Animal health; Human animal; Human health; Animal species; Zoology; Livestock; Pathology; Medicine; Ecology; Environmental health","score_opus":0.13153660215226826,"score_gpt":0.43681063934896025,"score_spread":0.305274037196692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982952028","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00004043332,0.99780333,0.00014573056,0.00013034127,0.00016658356,0.0006147991,0.00041477437,0.00004404532,0.00063995586],"genre_scores_gemma":[0.00032277044,0.9915243,0.00011495264,0.0001522252,0.00024331597,0.0007147561,0.0017571867,0.000050600753,0.0051198923],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99759215,0.00038420226,0.000697985,0.00047535237,0.000022455873,0.00082787935],"domain_scores_gemma":[0.999022,0.00013879157,0.00019915125,0.0004637594,0.000043833166,0.00013246117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003660326,0.00034646384,0.0018691503,0.00040657123,0.00013823135,0.000008801747,0.00031318225,0.00040395258,0.00008035245],"category_scores_gemma":[0.00023367435,0.00020440239,0.0006910322,0.00016968123,0.00041788057,0.000016112039,0.00014902811,0.00056154164,0.000033915523],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009470411,0.00013205431,0.00015429995,0.0018854623,0.00020754259,0.000018725916,0.00001611424,7.022738e-7,0.000023333583,0.00062997296,0.02645294,0.9703841],"study_design_scores_gemma":[0.0008311707,0.0007174226,0.00002996663,0.0011403384,0.00028704468,0.0003933038,0.0000019506729,0.000036791324,1.0632819e-7,0.0005849982,0.99583167,0.00014522894],"about_ca_topic_score_codex":0.000039166498,"about_ca_topic_score_gemma":0.0004279535,"teacher_disagreement_score":0.9702389,"about_ca_system_score_codex":0.00015723082,"about_ca_system_score_gemma":0.00012398059,"threshold_uncertainty_score":0.8335287},"labels":[],"label_agreement":null},{"id":"W1983194690","doi":"10.1016/j.tim.2007.09.003","title":"The benefits of using diverse animal models for studying pertussis","year":2007,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Bordetella pertussis; Biology; Immunity; Whooping cough; Disease; Immunology; Innate immune system; Animal model; Immune system; Vaccination; Medicine","score_opus":0.18632997258971848,"score_gpt":0.37824903435564156,"score_spread":0.19191906176592308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983194690","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0069036116,0.9905007,0.000039123726,0.00000925069,0.0014834347,0.00039529038,0.0005525633,0.00002247858,0.000093533126],"genre_scores_gemma":[0.0017641922,0.9967931,0.00015246547,0.000007456718,0.00010571651,0.00005656285,0.00058011885,0.000043027158,0.00049735344],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978157,0.00029024397,0.00090165756,0.0004280447,0.000006106817,0.00055819016],"domain_scores_gemma":[0.99839526,0.0006669056,0.0004909157,0.00035189063,0.000082648294,0.000012381017],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005579475,0.0003942897,0.0015486213,0.00057392503,0.00029766958,0.000011445537,0.00039814727,0.0009059276,0.00011479855],"category_scores_gemma":[0.000028734126,0.00025337475,0.00051758357,0.00040370118,0.0002336818,0.000049691098,0.00021183107,0.0003873855,0.000012483878],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011815932,0.00011319751,0.00002194431,0.0004617421,0.00044984874,3.9889787e-7,0.00009228231,0.000016450442,0.005691486,0.0009199835,0.00045589596,0.9916586],"study_design_scores_gemma":[0.00076493295,0.00021939298,0.000018513309,0.00095239544,0.00056255516,0.00019747521,0.00007999792,0.000004213329,0.0001405114,0.000020483341,0.9967199,0.0003196049],"about_ca_topic_score_codex":0.00014151791,"about_ca_topic_score_gemma":0.00027842072,"teacher_disagreement_score":0.99626404,"about_ca_system_score_codex":0.00009962822,"about_ca_system_score_gemma":0.00007206201,"threshold_uncertainty_score":0.99999183},"labels":[],"label_agreement":null},{"id":"W1984002397","doi":"10.1016/s0966-842x(00)01788-1","title":"Picornavirus RNA translation: roles for cellular proteins","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Picornavirus; Biology; Translation (biology); RNA; RNA-binding protein; Protein biosynthesis; Internal ribosome entry site; Tropism; Cell biology; Virology; Viral structural protein; Ribosome; Computational biology; Viral entry; Molecular biology; Messenger RNA; Viral replication; Virus; Genetics; Gene","score_opus":0.11646195848234556,"score_gpt":0.40648505628254467,"score_spread":0.2900230978001991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984002397","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008927371,0.9953027,0.00004556905,0.0001582348,0.00016195112,0.0011319515,0.00020423402,0.000044399992,0.002861729],"genre_scores_gemma":[0.00003810421,0.99023265,0.0005063206,0.000041834828,0.00019704862,0.0006208353,0.0022839766,0.000053084394,0.006026154],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981634,0.00021467239,0.0006321597,0.00047900827,0.000029590046,0.00048116225],"domain_scores_gemma":[0.99931926,0.00009293309,0.00011471077,0.00039291105,0.000034215136,0.00004598381],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023409342,0.0003440007,0.0016263211,0.0009457307,0.00007830476,0.000010191503,0.00017887363,0.0012476564,0.0013695929],"category_scores_gemma":[0.000013586083,0.0002650955,0.00057933305,0.0005324868,0.00021577517,0.000029321809,0.000025501848,0.0010984006,0.00017964911],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086173626,0.00017004414,0.0000038649723,0.0014597009,0.0001758491,0.000019708863,0.000022494722,1.8433816e-7,0.0016642574,0.000025027144,0.00065417547,0.99571854],"study_design_scores_gemma":[0.0010608359,0.0007045546,0.000002902468,0.0016817923,0.00033148637,0.0002498688,0.0000026785797,0.0000018060797,0.0001549378,0.000018422626,0.9955767,0.00021403162],"about_ca_topic_score_codex":0.000023976347,"about_ca_topic_score_gemma":0.0000485338,"teacher_disagreement_score":0.9955045,"about_ca_system_score_codex":0.00011867624,"about_ca_system_score_gemma":0.00017301917,"threshold_uncertainty_score":0.99998015},"labels":[],"label_agreement":null},{"id":"W1984693521","doi":"10.1016/j.tim.2011.04.005","title":"Pseudomonas aeruginosa: all roads lead to resistance","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1289,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Resistome; Biology; Pseudomonas aeruginosa; Biofilm; Microbiology; Swarming motility; Swarming (honey bee); Antibiotics; Antibiotic resistance; Mutant; Bacterial outer membrane; Quorum sensing; Bacteria; Gene; Genetics; Escherichia coli","score_opus":0.0435767434248896,"score_gpt":0.31487673956386314,"score_spread":0.27129999613897354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984693521","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010137905,0.99414337,0.0000068115073,0.00006632108,0.0008589723,0.0002517411,0.00024238807,0.000022441802,0.003394138],"genre_scores_gemma":[0.0001937731,0.9853735,0.0017717155,0.000353555,0.00046291732,0.000039505005,0.002663546,0.00008792843,0.009053591],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972036,0.0002921013,0.000704944,0.0010488095,0.00002824046,0.0007223431],"domain_scores_gemma":[0.9987848,0.000018238828,0.00025431014,0.0007966253,0.000037699563,0.00010834721],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024125453,0.0006143599,0.00137015,0.00036264647,0.000043762142,0.00001953942,0.0005425074,0.0011574156,0.00010419061],"category_scores_gemma":[0.000030150923,0.0005399493,0.00041989004,0.0003162585,0.00013944456,0.0000023671955,0.00034416647,0.00034853895,0.00019885285],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008158024,0.00007413439,0.0000046598066,0.00045898565,0.00017014694,0.000030490233,0.000043489854,1.3110888e-7,0.23161191,0.00011837241,0.029512318,0.7378938],"study_design_scores_gemma":[0.00022441798,0.00015362322,0.000006093305,0.000705677,0.00010639101,0.00012947425,0.0000029553978,1.5170198e-8,0.0029706096,0.0000029572525,0.9951004,0.00059742376],"about_ca_topic_score_codex":0.000044193064,"about_ca_topic_score_gemma":0.0010526456,"teacher_disagreement_score":0.96558803,"about_ca_system_score_codex":0.000060057268,"about_ca_system_score_gemma":0.00009834557,"threshold_uncertainty_score":0.9997052},"labels":[],"label_agreement":null},{"id":"W1988080024","doi":"10.1016/j.tim.2010.03.009","title":"Clanistics: a multi-level perspective for harvesting unrooted gene trees","year":2010,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Perspective (graphical); Phylogenetics; Phylogenetic tree; Tree of life (biology); Genome; Evolutionary biology; Tree (set theory); Gene; Genetics; Computer science; Artificial intelligence; Combinatorics; Mathematics","score_opus":0.0384894302281841,"score_gpt":0.30542014759173425,"score_spread":0.2669307173635501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988080024","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956137,0.0006121554,0.001722596,0.00018907644,0.0005792442,0.0001474404,0.0005501314,0.000007034661,0.0005786299],"genre_scores_gemma":[0.9598067,0.000037019992,0.038008224,0.000120445904,0.00027416085,0.000049929517,0.0002881342,0.000026417907,0.0013890055],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998911,0.00003659515,0.00022256222,0.0004639773,0.000015688918,0.0003501758],"domain_scores_gemma":[0.99946254,0.00004790127,0.00008040858,0.00025718557,0.00011043144,0.00004154198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001505838,0.00019333423,0.00022157421,0.00010694546,0.00008694381,0.000011215419,0.00020643062,0.00024452343,0.000017988908],"category_scores_gemma":[0.0001896913,0.00018453853,0.00009643578,0.000087478336,0.00017883896,5.0959017e-7,0.00011651002,0.00014647993,0.0000040817504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006460585,0.0000740239,0.003311981,0.0000030553322,0.000059709084,0.0000017229231,0.00014015396,0.00002493029,0.9908512,0.00044724147,0.00044125496,0.0045801015],"study_design_scores_gemma":[0.006204817,0.0010860116,0.14576498,0.000012652997,0.00008570709,0.00019771917,0.0006816852,0.00028204964,0.7480719,0.0006602617,0.09584534,0.0011068735],"about_ca_topic_score_codex":0.00011113708,"about_ca_topic_score_gemma":0.0065207267,"teacher_disagreement_score":0.24277931,"about_ca_system_score_codex":0.000017141352,"about_ca_system_score_gemma":0.00003960926,"threshold_uncertainty_score":0.7525263},"labels":[],"label_agreement":null},{"id":"W1989554073","doi":"10.1016/s0966-842x(99)01657-1","title":"Phosphatases and kinases delivered to the host cell by bacterial pathogens","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Effector; Kinase; Yersinia; Phosphatase; Microbiology; Secretion; Pathogen; Cell biology; Host (biology); Type three secretion system; Protein-Serine-Threonine Kinases; Shigella; Salmonella; Phosphorylation; Bacteria; Protein kinase A; Biochemistry; Genetics; Virulence","score_opus":0.018170908241215852,"score_gpt":0.3065409772039067,"score_spread":0.28837006896269085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989554073","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.036488898,0.9543761,0.0000011122969,0.000047531776,0.00024647187,0.00041884562,0.008183113,0.000009918983,0.00022801771],"genre_scores_gemma":[0.0008519001,0.97872096,0.00008358438,0.00015540488,0.000243858,0.000103663646,0.018083388,0.0000630896,0.0016941596],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973726,0.00051387673,0.0004889555,0.0009173691,0.000050946972,0.0006562455],"domain_scores_gemma":[0.9989455,0.0000848153,0.00014097577,0.0006714213,0.00003095172,0.00012633856],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021708771,0.0005219179,0.00094658765,0.00022382774,0.00009252737,0.000052386134,0.0006657969,0.0006499053,0.00060444],"category_scores_gemma":[0.00004297602,0.00038426448,0.00021504881,0.0003194143,0.00022392141,0.000003200044,0.00040898382,0.0003284785,0.00014013762],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002230389,0.00015727215,0.000056306155,0.0005329403,0.00011328389,0.000040485367,0.000041238887,4.8276297e-7,0.29254493,7.505592e-7,0.08541538,0.6208739],"study_design_scores_gemma":[0.00036780923,0.00035919604,0.000046300396,0.00021756982,0.00009333802,0.00017427893,0.000006326054,1.1289125e-7,0.006082954,1.6077163e-7,0.9922446,0.0004073719],"about_ca_topic_score_codex":0.000079297155,"about_ca_topic_score_gemma":0.00027729603,"teacher_disagreement_score":0.9068292,"about_ca_system_score_codex":0.000049896982,"about_ca_system_score_gemma":0.000118161886,"threshold_uncertainty_score":0.99986094},"labels":[],"label_agreement":null},{"id":"W1990289269","doi":"10.1016/j.tim.2004.11.009","title":"Quorum sensing in streptococcal biofilm formation","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":187,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biofilm; Quorum sensing; Bacteria; Biology; Microbiology; Streptococcus gordonii; Genetics","score_opus":0.025831612162356632,"score_gpt":0.3050591350667815,"score_spread":0.2792275229044249,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990289269","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006297931,0.99193937,0.000014428691,0.000048601436,0.0006309758,0.00035883414,0.00016926794,0.000020486703,0.00052009657],"genre_scores_gemma":[0.001914108,0.9898599,0.0009362196,0.00006544221,0.00028046189,0.000011633477,0.006614537,0.00006693178,0.00025077938],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99751437,0.00028424506,0.0008586437,0.0006808435,0.00003022947,0.000631648],"domain_scores_gemma":[0.99917537,0.000017830554,0.00030407892,0.00042779493,0.000022923328,0.00005201622],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002533347,0.00049877196,0.0011225246,0.0006006038,0.000040064908,0.000025726804,0.00021823191,0.0012552751,0.000039311642],"category_scores_gemma":[0.000026775728,0.00045179846,0.00032162972,0.0004187161,0.00012486534,0.000006048883,0.00019739586,0.0004223568,0.000039127674],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023585604,0.000046180543,0.0000068378786,0.00082527235,0.000030798557,0.000029236939,0.000023678818,0.0000036942274,0.1465311,0.000020614923,0.00028191975,0.8521771],"study_design_scores_gemma":[0.00063846284,0.00014930182,0.0000123860345,0.0029321155,0.00005171671,0.00046224453,0.000015493806,0.000001853687,0.003791327,0.000005407202,0.99137855,0.00056112086],"about_ca_topic_score_codex":0.000080537706,"about_ca_topic_score_gemma":0.00093704177,"teacher_disagreement_score":0.9910967,"about_ca_system_score_codex":0.00017283639,"about_ca_system_score_gemma":0.00015791116,"threshold_uncertainty_score":0.99979335},"labels":[],"label_agreement":null},{"id":"W1992926446","doi":"10.1016/j.tim.2003.11.002","title":"On the conceptual difficulties in rooting the tree of life","year":2003,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Origins and Evolution of Life","field":"Physics and Astronomy","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Tree of life (biology); Root (linguistics); Biology; Skepticism; Evolutionism; Epistemology; Tree (set theory); Ancestor; Event (particle physics); Conceptual framework; Cognitive science; Evolutionary biology; Phylogenetic tree; History; Psychology; Philosophy; Genetics","score_opus":0.049532131510048406,"score_gpt":0.30818349465652733,"score_spread":0.2586513631464789,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992926446","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0044737537,0.9839356,0.000006092785,0.00017459376,0.0004248052,0.00023964938,0.0003261006,0.0000076371325,0.010411767],"genre_scores_gemma":[0.14339097,0.8451961,0.00009267483,0.0004252561,0.0010400891,0.00031646123,0.0011300935,0.00012057222,0.008287771],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99840105,0.00048553536,0.00058109016,0.00023083403,0.000030419686,0.00027108885],"domain_scores_gemma":[0.99882865,0.0005336805,0.00032623793,0.0002809464,0.00001208658,0.000018415112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002849761,0.00025751579,0.00089627254,0.0001522431,0.000050542883,0.000007901589,0.00035294943,0.00013497302,0.00082319754],"category_scores_gemma":[0.00001533513,0.00012467481,0.0002821995,0.00031836337,0.00031375847,0.0000119541255,0.000055556033,0.0005135627,0.000028717604],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012867202,0.0003148264,0.0017957102,0.00025698927,0.000242584,0.0000012365181,0.0007003522,0.000056493882,0.000013096026,0.17892443,0.0291265,0.7885549],"study_design_scores_gemma":[0.00024883053,0.00003657368,0.000081794315,0.0005877869,0.0000365939,0.0000012113725,0.00035603088,0.0000013659039,0.0000020876914,0.00008281001,0.99841315,0.00015179571],"about_ca_topic_score_codex":0.000112832895,"about_ca_topic_score_gemma":0.00009976992,"teacher_disagreement_score":0.9692866,"about_ca_system_score_codex":0.000037794587,"about_ca_system_score_gemma":0.000082800085,"threshold_uncertainty_score":0.9013436},"labels":[],"label_agreement":null},{"id":"W1994577423","doi":"10.1016/s0966-842x(00)01840-0","title":"Gram-negative pathogens and molecular mimicry: is there a case for mistaken identity?","year":2000,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; University Health Network","funders":"","keywords":"Molecular mimicry; Biology; Mimicry; Autoimmunity; Immune system; Identity (music); Immunology; Genetics; Ecology","score_opus":0.013038985526892814,"score_gpt":0.2664542658464295,"score_spread":0.2534152803195367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994577423","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99340296,0.0042796135,0.00008772047,0.0007074639,0.00014064519,0.00023462797,0.00023525285,0.000036803613,0.00087491045],"genre_scores_gemma":[0.9929819,0.0002107158,0.00039454584,0.00050840795,0.000014851086,0.00006369477,0.0003902313,0.000023543496,0.0054121213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984988,0.00031300276,0.00035711715,0.00039465146,0.000008987261,0.00042744126],"domain_scores_gemma":[0.99944985,0.00015010066,0.00008871898,0.00025362067,0.00004132716,0.000016384616],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00026868758,0.00022385038,0.00034566395,0.00024730738,0.00014450736,0.000017371442,0.00014927775,0.0003978267,0.0023859856],"category_scores_gemma":[0.00003352647,0.00020791017,0.000114621835,0.00019860928,0.00027562134,0.00012182338,0.00003972393,0.00020945036,0.00017726462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005327828,0.00007145379,0.00018168986,0.000016572993,0.00013843317,0.00022930908,0.0015992912,0.0000018084256,0.9462686,0.0004680154,0.002596255,0.047895778],"study_design_scores_gemma":[0.007406381,0.0007283605,0.0020142586,0.00006256418,0.00016087829,0.010316845,0.0009182734,0.000018129927,0.72902733,0.0021799433,0.24639384,0.00077318016],"about_ca_topic_score_codex":0.00019138063,"about_ca_topic_score_gemma":0.0002627654,"teacher_disagreement_score":0.24379759,"about_ca_system_score_codex":0.00003900237,"about_ca_system_score_gemma":0.000023432669,"threshold_uncertainty_score":0.998526},"labels":[],"label_agreement":null},{"id":"W1994943697","doi":"10.1016/s0966-842x(00)01771-6","title":"The structural basis of CEACAM-receptor targeting by neisserial Opa proteins","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Biology; Computational biology; Cell biology","score_opus":0.018074665460891495,"score_gpt":0.2961473143931077,"score_spread":0.2780726489322162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994943697","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008601881,0.98627806,4.794342e-7,0.000050066406,0.003088665,0.00044445897,0.0012421997,0.000043728123,0.00025046422],"genre_scores_gemma":[0.0007424797,0.98954886,0.000039516803,0.000008698596,0.00021556958,0.00013927497,0.0055697314,0.000056365945,0.0036794979],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.996536,0.0009967685,0.0012450233,0.00054773246,0.000008276896,0.0006661606],"domain_scores_gemma":[0.998579,0.00029714464,0.0006234219,0.00043981837,0.0000412289,0.000019381167],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033394364,0.00056578533,0.001829403,0.0003300825,0.00027676596,0.000021777549,0.0006384851,0.0011888716,0.005524807],"category_scores_gemma":[0.0000518861,0.00035423657,0.0004991219,0.00049151556,0.0003916772,0.000049749844,0.00014870774,0.00082111737,0.00023297938],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009984179,0.000054878405,0.000013012303,0.0003191509,0.00031052806,3.8423588e-7,0.000040772637,1.7744763e-7,0.10002697,0.000065187014,0.023651667,0.8754174],"study_design_scores_gemma":[0.0005702236,0.00016831614,0.000006019864,0.00047257738,0.00015509041,0.00011465182,0.000013867365,3.8886316e-8,0.0027096746,0.000007294608,0.9954421,0.0003401283],"about_ca_topic_score_codex":0.00030114077,"about_ca_topic_score_gemma":0.00012900223,"teacher_disagreement_score":0.97179043,"about_ca_system_score_codex":0.000085981956,"about_ca_system_score_gemma":0.00010260168,"threshold_uncertainty_score":0.999891},"labels":[],"label_agreement":null},{"id":"W1998943157","doi":"10.1016/j.tim.2012.09.002","title":"Mycobacterium tuberculosis-secreted phosphatases: from pathogenesis to targets for TB drug development","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Protein Tyrosine Phosphatases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Protein tyrosine phosphatase; Biology; Phosphatase; Mycobacterium tuberculosis; Phagosome; Microbiology; Tuberculosis; Cell biology; Kinase; Phosphorylation; Phagocytosis","score_opus":0.02822506129548123,"score_gpt":0.30244540162488465,"score_spread":0.2742203403294034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998943157","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00048893684,0.9824422,0.00020970427,0.000030394749,0.0008541427,0.0011107197,0.014814487,0.000032723052,0.00001666634],"genre_scores_gemma":[0.00022795633,0.83613175,0.01337236,0.0003405055,0.00059751875,0.002007274,0.14674376,0.00017739918,0.00040146007],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960946,0.00030200154,0.0011094883,0.0013756255,0.00006437732,0.0010539027],"domain_scores_gemma":[0.99822074,0.000100153615,0.0004014682,0.0009646948,0.00007844256,0.0002345106],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00040094982,0.00095322187,0.0017910835,0.00036973026,0.00009525032,0.000029009687,0.0008578366,0.0008940303,0.00025859044],"category_scores_gemma":[0.00010151621,0.00086837646,0.0004984409,0.00036988748,0.000091596594,0.0000068599593,0.00065543683,0.00022812857,0.00015311725],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013449093,0.00015822411,0.000053596774,0.0013749911,0.0004537441,0.000008425219,0.000059839593,7.396433e-7,0.023954557,0.000020234931,0.014138919,0.95964223],"study_design_scores_gemma":[0.0004645459,0.000101492624,0.000056187542,0.000741755,0.00035304172,0.000024977677,0.0000051822017,9.5961305e-8,0.08215444,0.0000036682532,0.9151833,0.0009112897],"about_ca_topic_score_codex":0.0000937097,"about_ca_topic_score_gemma":0.00034970336,"teacher_disagreement_score":0.95873094,"about_ca_system_score_codex":0.00017723258,"about_ca_system_score_gemma":0.000271329,"threshold_uncertainty_score":0.9993767},"labels":[],"label_agreement":null},{"id":"W1999163520","doi":"10.1016/j.tim.2014.08.005","title":"Reovirus FAST proteins: virus-encoded cellular fusogens","year":2014,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Parvovirus B19 Infection Studies","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Syncytium; Fusion mechanism; Cell fusion; Cell biology; Lipid bilayer fusion; Viral envelope; Virus; Viral entry; Transmembrane protein; Membrane protein; Virology; Cell; Viral replication; Genetics; Membrane","score_opus":0.06719254943769862,"score_gpt":0.37041342502539876,"score_spread":0.30322087558770017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999163520","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009784078,0.9862927,0.00007203019,0.000052900592,0.00077050366,0.0008971718,0.00025651223,0.0001856687,0.011374643],"genre_scores_gemma":[0.000063829866,0.99093986,0.00038649153,0.00023297932,0.00055849575,0.0004944212,0.0011236774,0.0001246096,0.006075633],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959906,0.0006586048,0.0013927532,0.0010492146,0.00009438248,0.0008144582],"domain_scores_gemma":[0.9979797,0.00024259387,0.0006140616,0.0009514289,0.00008118275,0.00013105223],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005732414,0.000884354,0.0045207767,0.0016161704,0.00010705127,0.0000128558,0.00032823512,0.0011527222,0.0013532344],"category_scores_gemma":[0.00019714369,0.00069331843,0.00090242457,0.0011092809,0.00041335972,0.00003293842,0.0002668789,0.0012519328,0.0045087584],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048332615,0.00027064775,0.000039023507,0.0044238046,0.0006149428,0.00016109056,0.00010231766,2.9453855e-7,0.007731285,0.00004688047,0.014120492,0.9724409],"study_design_scores_gemma":[0.0008768357,0.00017422067,0.0000052661976,0.004157134,0.0009065471,0.0006544735,0.0000070157935,5.426057e-7,0.00052559306,0.000008905244,0.9921262,0.0005572609],"about_ca_topic_score_codex":0.00011982682,"about_ca_topic_score_gemma":0.00027307548,"teacher_disagreement_score":0.9780057,"about_ca_system_score_codex":0.00041067522,"about_ca_system_score_gemma":0.00019069065,"threshold_uncertainty_score":0.99955964},"labels":[],"label_agreement":null},{"id":"W2004005778","doi":"10.1016/s0966-842x(00)01746-7","title":"The role of Chlamydia pneumoniae in atherosclerosis – recent evidence from animal models: Response","year":2000,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto","funders":"","keywords":"Biology; Inflammation; Macrophage; Vacuole; Chlamydia; Spleen; Chlamydophila pneumoniae; Pathology; Immunology; Peritoneum; Arteriosclerosis; Aorta; Abdominal aorta; Chlamydiales; Microbiology; Cytoplasm; Medicine; Cell biology; In vitro; Anatomy; Internal medicine","score_opus":0.0404541653566873,"score_gpt":0.30350959515443793,"score_spread":0.26305542979775065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004005778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9868268,0.010845809,0.0000014259325,0.00091990427,0.0001586964,0.00017826747,0.00008397254,0.000028998396,0.000956159],"genre_scores_gemma":[0.9937884,0.0044261236,0.000044212207,0.0000204623,0.000018828947,0.00006969752,0.000048466893,0.000019762081,0.0015639983],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9962416,0.0019466867,0.00058256526,0.000603371,0.000027886552,0.00059788814],"domain_scores_gemma":[0.99762714,0.0014634471,0.00010870609,0.00070664653,0.00007679211,0.000017256476],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001442847,0.00021164793,0.00038864856,0.00037854613,0.00012699395,0.000011646254,0.0005523841,0.0003696817,0.002567469],"category_scores_gemma":[0.00028672046,0.00016348418,0.00009176783,0.0007557897,0.0007387827,0.00014139878,0.00011413571,0.0007025225,0.0003463227],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032753458,0.00023200008,0.023060419,0.0000011740306,0.000048550406,0.0000017283194,0.0008429503,0.0002419687,0.88818806,0.000054115564,0.00014970792,0.08390399],"study_design_scores_gemma":[0.0014212492,0.0006391375,0.5337874,0.00010098695,0.000016006486,0.000059551214,0.00035876874,0.000042396387,0.4186453,0.0008851538,0.043743305,0.0003006816],"about_ca_topic_score_codex":0.0016092579,"about_ca_topic_score_gemma":0.0013419545,"teacher_disagreement_score":0.51072705,"about_ca_system_score_codex":0.00018418468,"about_ca_system_score_gemma":0.000089291054,"threshold_uncertainty_score":0.9983443},"labels":[],"label_agreement":null},{"id":"W2004637416","doi":"10.1016/j.tim.2009.08.005","title":"Are essential genes really essential?","year":2009,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Gene; Genome; Genetics; Context (archaeology); Computational biology; Phenotype; Evolutionary biology","score_opus":0.00987294378425692,"score_gpt":0.2596633120966559,"score_spread":0.24979036831239895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004637416","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99364686,0.0032936942,0.00005721061,0.0007458515,0.00029432404,0.00005740232,0.000045792585,0.000006233051,0.0018526216],"genre_scores_gemma":[0.99682647,0.0004996466,0.00068531657,0.0005885484,0.00031738554,0.000006635047,0.00016095408,0.000013296852,0.00090173195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886876,0.00006656162,0.0002469012,0.0004404778,0.000024754734,0.00035255562],"domain_scores_gemma":[0.99936527,0.0000062594772,0.00012533189,0.0004245707,0.00003918645,0.000039386327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009997161,0.00019146196,0.00023762792,0.00011898473,0.000058695576,0.0000107898095,0.000315616,0.0002069853,0.000049585866],"category_scores_gemma":[0.000020535193,0.00018330153,0.00010019546,0.00012422497,0.000106742045,5.160255e-7,0.00014652214,0.00008267366,0.000013092791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006329441,0.00007425472,0.0048960773,0.0000024041397,0.000036023845,0.000011023333,0.00003343458,0.000042586642,0.9814169,0.0000759278,0.0048613953,0.008486679],"study_design_scores_gemma":[0.0016618897,0.00053894613,0.17952743,0.0000136053395,0.000040235598,0.00013669096,0.00010145478,0.0000066398356,0.7156773,0.00061995344,0.101033576,0.0006422641],"about_ca_topic_score_codex":0.00001702524,"about_ca_topic_score_gemma":0.0003363215,"teacher_disagreement_score":0.2657396,"about_ca_system_score_codex":0.000010761226,"about_ca_system_score_gemma":0.00001843822,"threshold_uncertainty_score":0.7474819},"labels":[],"label_agreement":null},{"id":"W2004963012","doi":"10.1016/j.tim.2014.12.008","title":"HIV-1 adaptation to HLA: a window into virus–host immune interactions","year":2015,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver; Simon Fraser University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Host (biology); Immune system; Adaptation (eye); Virology; Human leukocyte antigen; Virus; Window (computing); Human immunodeficiency virus (HIV); Window of opportunity; Immunology; Genetics; Antigen","score_opus":0.06809979622688828,"score_gpt":0.37881388351809003,"score_spread":0.31071408729120176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004963012","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001447974,0.9940656,0.00004113598,0.000222129,0.0012217888,0.00072312454,0.0018167137,0.00008812892,0.0016766227],"genre_scores_gemma":[0.0006240995,0.95314354,0.00044924853,0.000070394126,0.000103781946,0.00077878515,0.02316122,0.000092239046,0.021576703],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99584466,0.0011965843,0.001066851,0.0009205725,0.00003164565,0.00093965593],"domain_scores_gemma":[0.99842197,0.0003052013,0.0003132704,0.00074155646,0.00011587444,0.000102124155],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00048387592,0.0007077432,0.0022492942,0.0019093651,0.00015620617,0.00002511182,0.0006714802,0.0008791366,0.0025673357],"category_scores_gemma":[0.000110551126,0.00057260564,0.00048703846,0.0009945708,0.000279274,0.00008540629,0.00039870915,0.0012537085,0.030671375],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013512014,0.00041496285,0.0000098017435,0.00033782262,0.00071382604,0.000065521985,0.0010187763,0.000002311516,0.0073563345,0.00004392057,0.02354938,0.9663522],"study_design_scores_gemma":[0.001155005,0.00039208157,0.000026673446,0.0011768257,0.0002531423,0.00049334875,0.0001261536,1.5217122e-7,0.00016080785,0.000010859528,0.9957434,0.0004615558],"about_ca_topic_score_codex":0.0009242327,"about_ca_topic_score_gemma":0.0025187067,"teacher_disagreement_score":0.972194,"about_ca_system_score_codex":0.00087075564,"about_ca_system_score_gemma":0.00041572805,"threshold_uncertainty_score":0.99967253},"labels":[],"label_agreement":null},{"id":"W2006133563","doi":"10.1016/j.tim.2012.05.006","title":"Nectin 4 is the epithelial cell receptor for measles virus","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":141,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Izaak Walton Killam Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Measles virus; Biology; Oncolytic virus; Virology; Virus; Immune system; Morbillivirus; Vero cell; Immunology; Microbiology; Measles; Vaccination","score_opus":0.08979019228495781,"score_gpt":0.37473562630034246,"score_spread":0.28494543401538464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006133563","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002294671,0.99567044,0.0000039330475,0.00039001874,0.0008329018,0.0005969254,0.0015340162,0.0000341506,0.0007081632],"genre_scores_gemma":[0.00017312514,0.9899638,0.00017180691,0.0010901346,0.00081460574,0.0002946923,0.0016188557,0.000058648453,0.0058143176],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99809366,0.00035517465,0.0005298343,0.00044333562,0.00002875322,0.0005492169],"domain_scores_gemma":[0.9988304,0.00036038453,0.00024688098,0.00045692193,0.000025873516,0.00007958825],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033453855,0.0004175975,0.0015325408,0.0002882956,0.000088277906,0.000004980062,0.0002951355,0.00083925406,0.0020666597],"category_scores_gemma":[0.000052937427,0.00023892106,0.00074893277,0.0002338384,0.00027158592,0.000020670894,0.00008363688,0.0005650683,0.0006184125],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021158843,0.00027259777,0.00003203021,0.0025036784,0.00019829493,0.0000041666685,0.00010858038,2.1348601e-8,0.0024978276,0.00004873629,0.030751651,0.9633708],"study_design_scores_gemma":[0.00071415806,0.00026503648,0.000027437694,0.0005650413,0.0017078244,0.00008644983,0.000009546933,1.4464615e-7,0.00026071182,0.000018283175,0.99611866,0.00022672267],"about_ca_topic_score_codex":0.000021961969,"about_ca_topic_score_gemma":0.000045228837,"teacher_disagreement_score":0.965367,"about_ca_system_score_codex":0.00007621441,"about_ca_system_score_gemma":0.00011246207,"threshold_uncertainty_score":0.9988456},"labels":[],"label_agreement":null},{"id":"W2008030247","doi":"10.1016/j.tim.2013.10.007","title":"A cancer-associated Epstein-Barr virus variant with epithelial tropism","year":2013,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Tropism; Biology; Lytic cycle; Epstein–Barr virus; Tissue tropism; Virus; Virology; Nasopharyngeal carcinoma; Cancer; Cancer research; Genetics","score_opus":0.010610208180973272,"score_gpt":0.2574419497342851,"score_spread":0.2468317415533118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008030247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902499,0.00071295974,0.000011292776,0.0034395903,0.0002773019,0.00025482787,0.00014380609,0.00008769011,0.0048226733],"genre_scores_gemma":[0.99312377,0.00018878505,0.0001387772,0.0017988377,0.000086085696,0.00014058137,0.00021555503,0.00003824416,0.0042693564],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984731,0.0000943494,0.00032875172,0.00040770066,0.00006684077,0.00062926585],"domain_scores_gemma":[0.99938637,0.00003695137,0.00015510061,0.00023550693,0.00008014199,0.00010593053],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010706806,0.0002536612,0.0005723181,0.00027199008,0.0000633377,0.000014387161,0.00013049867,0.0003168001,0.0030734276],"category_scores_gemma":[0.000030346495,0.00019012886,0.00010002424,0.0005114104,0.00016694708,0.000054363536,0.00003283984,0.000362251,0.00013304538],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009597461,0.00087654416,0.03569124,0.000030374755,0.0006528345,0.00024149405,0.0012324223,0.00006711834,0.88171756,0.00022893994,0.035423104,0.04287862],"study_design_scores_gemma":[0.12230055,0.013313926,0.69978976,0.0011953595,0.001502711,0.00090329966,0.0020827977,0.0006521519,0.058885608,0.0019206153,0.09352357,0.0039296593],"about_ca_topic_score_codex":0.009741752,"about_ca_topic_score_gemma":0.0080776485,"teacher_disagreement_score":0.8228319,"about_ca_system_score_codex":0.00040259052,"about_ca_system_score_gemma":0.00016145236,"threshold_uncertainty_score":0.9978379},"labels":[],"label_agreement":null},{"id":"W2008181873","doi":"10.1016/j.tim.2013.09.004","title":"Modulation of autophagy by Helicobacter pylori and its role in gastric carcinogenesis","year":2013,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation of Canada","keywords":"Autophagy; Helicobacter pylori; Biology; Carcinogenesis; Pathogenesis; Mechanism (biology); Pathogen; Cancer; Disease; Immunology; Intracellular; Cancer research; Cell biology; Genetics; Apoptosis; Internal medicine; Medicine","score_opus":0.03187185803351445,"score_gpt":0.300643617279612,"score_spread":0.26877175924609753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008181873","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17192161,0.8270873,0.0000012517548,0.00008817448,0.00016321677,0.0004516567,0.00018308939,0.00002237138,0.000081372185],"genre_scores_gemma":[0.020796038,0.977159,0.00010188675,0.00006916072,0.00006489636,0.00016026542,0.0010760966,0.000059781203,0.000512842],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99708265,0.0003810151,0.0011887187,0.0006942008,0.00005260575,0.0006008057],"domain_scores_gemma":[0.99897325,0.00011048734,0.00041769748,0.00033503637,0.00007988842,0.0000836418],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021957612,0.00054967165,0.0027492556,0.0015338543,0.00002063754,0.000004431132,0.0001700572,0.0008866745,0.00013829437],"category_scores_gemma":[0.000051413946,0.00045459214,0.00019645238,0.0007868594,0.00016272618,0.00005394782,0.00018409688,0.0006404771,0.00004374602],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006773148,0.00026511366,0.02074804,0.0027575425,0.00060399127,0.000035780587,0.00023044962,0.0000012463828,0.01735142,0.0000063062635,0.0008262557,0.9571061],"study_design_scores_gemma":[0.008912257,0.002460604,0.11772128,0.010719973,0.0031334148,0.00269007,0.00008608351,0.00008416354,0.0008299892,0.000015660058,0.85184216,0.0015043593],"about_ca_topic_score_codex":0.00011305934,"about_ca_topic_score_gemma":0.00008772892,"teacher_disagreement_score":0.95560175,"about_ca_system_score_codex":0.00022607532,"about_ca_system_score_gemma":0.000057429894,"threshold_uncertainty_score":0.9997906},"labels":[],"label_agreement":null},{"id":"W2009283988","doi":"10.1016/j.tim.2011.04.004","title":"Structure and genetics of circular bacteriocins","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Bacteriocin; Biology; Bacteria; Antimicrobial peptides; Biogenesis; Membrane protein; Gene; Biochemistry; Genetics; Microbiology; Membrane","score_opus":0.02279815697873174,"score_gpt":0.2789412449827838,"score_spread":0.25614308800405206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009283988","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04724039,0.9519887,0.000004547768,0.0000031543918,0.0001317617,0.000095222436,0.00047788146,0.000003588242,0.000054775574],"genre_scores_gemma":[0.009232101,0.9858051,0.00024434886,0.000021943353,0.00009729457,0.0000052023697,0.004439223,0.000026792399,0.0001279949],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988261,0.00009849629,0.00042493606,0.00043029763,0.000016060578,0.00020412849],"domain_scores_gemma":[0.9994147,0.000006120511,0.00023366068,0.00028065895,0.000026120555,0.00003874825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000040012437,0.00029521447,0.0007739239,0.00014289876,0.000013989216,0.0000043309915,0.00021506072,0.0008655753,0.00009335383],"category_scores_gemma":[0.000010194476,0.00023356338,0.00014655234,0.00013983589,0.00018760226,0.0000012527721,0.00016706625,0.00018665529,0.0000010746573],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008922025,0.000010481495,0.00008921429,0.0011393591,0.00006420724,0.00000120344,0.000016905942,2.8254828e-8,0.3675477,0.000015392161,0.00005427303,0.6310523],"study_design_scores_gemma":[0.00019004176,0.00013065728,0.0003451817,0.00034524954,0.00012318815,0.00020569231,0.0000015630162,1.7181468e-7,0.017419752,0.00002461678,0.98088133,0.00033256676],"about_ca_topic_score_codex":0.0000050315425,"about_ca_topic_score_gemma":0.000010180936,"teacher_disagreement_score":0.98082703,"about_ca_system_score_codex":0.000010400929,"about_ca_system_score_gemma":0.000033495606,"threshold_uncertainty_score":0.95244384},"labels":[],"label_agreement":null},{"id":"W2013406035","doi":"10.1016/j.tim.2008.08.011","title":"Loss of CD127 expression links immune activation and CD4+ T cell loss in HIV infection","year":2008,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Interleukin-7 receptor; Immune system; Biology; Immunology; T cell; Memory T cell; IL-2 receptor","score_opus":0.012463548313817848,"score_gpt":0.23929356873990235,"score_spread":0.2268300204260845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013406035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961609,0.0007939739,0.00016925776,0.00013029981,0.0011291893,0.000102061946,0.0000064874903,0.000033471963,0.0014743266],"genre_scores_gemma":[0.99367285,0.0005253191,0.00006137212,0.000066921224,0.000019430165,0.000015321322,0.00048302257,0.000014954298,0.005140817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984756,0.000314156,0.0005667388,0.0003364416,0.000013797956,0.00029326667],"domain_scores_gemma":[0.9993694,0.0001082948,0.00024682347,0.0002160688,0.0000485051,0.000010926911],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019655509,0.00019895182,0.00038117764,0.0007230467,0.00008748972,0.0000028634154,0.000094578354,0.00073391956,0.0009544269],"category_scores_gemma":[0.000032209908,0.00018871143,0.00007428366,0.0003219745,0.00030160055,0.00016673352,0.000080742975,0.00073671987,0.00010130259],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046335557,0.00027835756,0.05303486,0.000018322105,0.000014371156,0.000004784835,0.0007549412,0.00005432923,0.9423184,0.000030022346,0.0013840029,0.0016442763],"study_design_scores_gemma":[0.0027799245,0.00022848407,0.13104631,0.00007267469,0.0000072264465,0.00028183768,0.00007547689,0.000008294851,0.8504882,0.000020947387,0.014802836,0.00018782649],"about_ca_topic_score_codex":0.0003817602,"about_ca_topic_score_gemma":0.000047220055,"teacher_disagreement_score":0.09183022,"about_ca_system_score_codex":0.000082911436,"about_ca_system_score_gemma":0.000023029605,"threshold_uncertainty_score":0.9999588},"labels":[],"label_agreement":null},{"id":"W2016965453","doi":"10.1016/j.tim.2012.10.001","title":"Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":275,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children; Canada Research Chairs","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Biology; Biochemistry; Bacterial outer membrane; Porin; Secretion; ATP synthase; Tetratricopeptide; Context (archaeology); Biofilm; Cell biology; Bacteria; Enzyme; Escherichia coli","score_opus":0.03447592272953127,"score_gpt":0.30533340900155337,"score_spread":0.2708574862720221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016965453","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025547998,0.9718634,0.0000042803285,0.000023625584,0.0013778935,0.00033528943,0.000439108,0.00002032184,0.00038809745],"genre_scores_gemma":[0.009929551,0.98373276,0.000380741,0.00006117523,0.00059408153,0.000059156966,0.004540131,0.000092764545,0.00060965813],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99696976,0.00058132736,0.00083281077,0.00082477264,0.000039119113,0.00075218687],"domain_scores_gemma":[0.9989423,0.00004431616,0.0003849343,0.000514394,0.000026807185,0.00008720601],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004220807,0.00060440984,0.0013630044,0.00050783344,0.000039738017,0.000025704574,0.0003269376,0.0013679983,0.00030888684],"category_scores_gemma":[0.000042432417,0.000537473,0.00032791303,0.0003137461,0.00015839167,0.000006922265,0.00027440477,0.00049045315,0.00007390491],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005530984,0.000100490404,0.00003226851,0.0004151548,0.000079169615,0.000018696614,0.0000378842,2.2704332e-7,0.47622338,0.000018152523,0.00015358998,0.52286565],"study_design_scores_gemma":[0.00059348467,0.00016384205,0.00007907286,0.0011853612,0.00017563302,0.00033344745,0.000019998746,3.090005e-7,0.010737691,0.00000522165,0.98590565,0.0008002625],"about_ca_topic_score_codex":0.00017129126,"about_ca_topic_score_gemma":0.0011405384,"teacher_disagreement_score":0.9857521,"about_ca_system_score_codex":0.0001332042,"about_ca_system_score_gemma":0.0001006597,"threshold_uncertainty_score":0.9999284},"labels":[],"label_agreement":null},{"id":"W2018796656","doi":"10.1016/s0966-842x(02)02369-7","title":"2001: a year of major advances in anthrax toxin research","year":2002,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Bacillus anthracis; Anthrax toxin; Toxin; Biology; Microbiology; Anthrax vaccines; Pathogen; Microbial toxins; Secretion; Bacteria; Immunology; Antigen; Recombinant DNA; Immunization; Fusion protein; Genetics","score_opus":0.0873878473863516,"score_gpt":0.4210827307510329,"score_spread":0.33369488336468134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018796656","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009145862,0.99344224,0.0000018991799,0.00001910522,0.00018718195,0.0002704506,0.0003087717,0.0000033736899,0.004852412],"genre_scores_gemma":[0.0007292383,0.9954561,0.00014691272,0.0000066501716,0.00017598658,0.00007312655,0.0007104093,0.000043096254,0.0026584724],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968618,0.0007834296,0.0007253677,0.00071448495,0.00008892041,0.0008259751],"domain_scores_gemma":[0.99903345,0.00009076908,0.0001546693,0.00056977716,0.00008385488,0.0000674739],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010825393,0.0003104882,0.0012369097,0.0009459477,0.00002939812,0.000009506547,0.0006488911,0.000915505,0.0008363242],"category_scores_gemma":[0.0001463951,0.00026439174,0.00024534386,0.0009289615,0.00047258488,0.000003826226,0.00033962823,0.00066577416,0.00007711518],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008090568,0.00020152578,0.00005302207,0.0016295701,0.0000369956,0.000022298915,0.000022485543,4.7172696e-7,0.026349384,0.00004610168,0.0038024455,0.9677548],"study_design_scores_gemma":[0.0005445431,0.00032206762,0.000011461409,0.0009549792,0.000012722897,0.000031710384,0.000010837466,3.6569327e-7,0.00067677966,0.000015977199,0.9971811,0.00023741649],"about_ca_topic_score_codex":0.00006246443,"about_ca_topic_score_gemma":0.0009245558,"teacher_disagreement_score":0.9933787,"about_ca_system_score_codex":0.000075596035,"about_ca_system_score_gemma":0.0001465332,"threshold_uncertainty_score":0.9999808},"labels":[],"label_agreement":null},{"id":"W2019713522","doi":"10.1016/j.tim.2011.11.006","title":"Host specificity determinants as a genetic continuum","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"","keywords":"Biology; Host (biology); Host specificity; Genome; Evolutionary biology; Genetics; Host response; Pathogenicity; Computational biology; Gene; Microbiology; Immune system","score_opus":0.11904973023242135,"score_gpt":0.3455957740604679,"score_spread":0.22654604382804652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019713522","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008627569,0.98701704,2.2419332e-8,0.000015865859,0.00023108756,0.00026836313,0.0016732636,0.000040341827,0.0021264704],"genre_scores_gemma":[0.00013406924,0.995929,0.00002651695,0.000030216966,0.00020921126,0.0000722628,0.00046151734,0.0000029004905,0.0031343289],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99736285,0.0004747677,0.000608701,0.0007166654,0.00005013985,0.0007868969],"domain_scores_gemma":[0.99911845,0.0003832585,0.00025294072,0.0001287003,0.000030688243,0.00008594778],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00024138734,0.00046838674,0.0016945525,0.00012737661,0.00010255505,0.000024932377,0.0008420885,0.00053373305,0.0021139202],"category_scores_gemma":[0.000066941175,0.00016205657,0.00035706235,0.000597999,0.0002881788,0.000026875838,0.0004319115,0.0005018646,0.0010435948],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010866416,0.00006558264,0.00007359211,0.00016223366,0.000036395373,0.00011898236,0.000018052602,9.930027e-10,0.0039908676,0.000004650615,0.0037070324,0.99181175],"study_design_scores_gemma":[0.00006740805,0.00020131434,0.0016877981,0.0007587314,0.0000474268,0.0002911859,0.00000765515,3.8309388e-8,0.00006518731,0.00001734238,0.9964973,0.00035862334],"about_ca_topic_score_codex":0.0004888231,"about_ca_topic_score_gemma":0.010319755,"teacher_disagreement_score":0.9927903,"about_ca_system_score_codex":0.0000755064,"about_ca_system_score_gemma":0.000021201296,"threshold_uncertainty_score":0.9997342},"labels":[],"label_agreement":null},{"id":"W2021455181","doi":"10.1016/j.tim.2005.05.007","title":"Naip5/Birc1e and susceptibility to Legionella pneumophila","year":2005,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Legionella pneumophila; Biology; Legionella; Microbiology; Legionnaires' disease; Bacteria; Genetics","score_opus":0.04431688488053725,"score_gpt":0.36572374315161715,"score_spread":0.3214068582710799,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021455181","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0047003203,0.9932554,0.000004666539,0.00025514883,0.00019902241,0.00034659795,0.00014452041,0.000015537018,0.0010788298],"genre_scores_gemma":[0.0042763916,0.98953694,0.00016736751,0.00022515738,0.00055767334,0.0000674065,0.0010802511,0.000063266816,0.0040255645],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972002,0.00032138982,0.0005788418,0.0011710135,0.000054123986,0.0006744617],"domain_scores_gemma":[0.9989042,0.000042768774,0.0001232136,0.0007121428,0.000043028504,0.00017461862],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00041162226,0.00050547783,0.0011457603,0.000486148,0.00006663261,0.000025807756,0.0005110529,0.00091517996,0.000055329016],"category_scores_gemma":[0.00004921944,0.00042763609,0.00028740094,0.00040997998,0.00027899613,0.0000025498318,0.0005871051,0.0004795115,0.00011385586],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032162483,0.00008844867,0.000070240996,0.0005765431,0.00006896221,0.0000201735,0.000028827939,0.0000012495026,0.012748715,0.000023745328,0.010584183,0.97575676],"study_design_scores_gemma":[0.0002700765,0.00022476928,0.000030022617,0.00033133593,0.000045914327,0.00028685556,0.00000738241,3.6257282e-7,0.00017180436,0.0000060114776,0.9981849,0.00044053985],"about_ca_topic_score_codex":0.000040915915,"about_ca_topic_score_gemma":0.0005453481,"teacher_disagreement_score":0.98760074,"about_ca_system_score_codex":0.00007846946,"about_ca_system_score_gemma":0.00014600516,"threshold_uncertainty_score":0.99981755},"labels":[],"label_agreement":null},{"id":"W2022536152","doi":"10.1016/s0966-842x(02)02464-2","title":"The use of animal infection models to study the pathogenesis of melioidosis and glanders","year":2002,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Melioidosis; Pathogenesis; Biology; Immunology; Animal model; Microbiology; Virology","score_opus":0.2075177809315056,"score_gpt":0.3611700970958906,"score_spread":0.153652316164385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022536152","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08954668,0.90877587,0.000024509158,0.000109326116,0.00026246326,0.0011005516,0.00009614405,0.000017184375,0.00006725202],"genre_scores_gemma":[0.027728887,0.971736,0.00010516525,0.000027623022,0.000046413206,0.00016667022,0.000029212333,0.000029064664,0.00013097405],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99822634,0.0004359274,0.0007301017,0.0003275274,0.00005259563,0.0002274944],"domain_scores_gemma":[0.99868786,0.00039489017,0.00030685822,0.0004925347,0.00007519317,0.000042661446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039346036,0.00027787435,0.0012528502,0.00056884915,0.00009168241,0.00001100007,0.00011193307,0.00026937478,0.000044224456],"category_scores_gemma":[0.0000522073,0.00014337196,0.00026907024,0.0009426642,0.00017510878,0.000030551924,0.00011993026,0.0002652269,0.0000023184173],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000691632,0.00037065457,0.00085870543,0.0004725136,0.00046637622,0.0000030761967,0.0003553608,0.000009114871,0.0008737243,0.000024263378,0.00054975704,0.9959473],"study_design_scores_gemma":[0.0013089116,0.0026211054,0.0055645457,0.0015831757,0.0036151852,0.00042008754,0.00015770156,0.000033783333,0.000060636237,0.0000058522583,0.98429537,0.00033363164],"about_ca_topic_score_codex":0.00056738785,"about_ca_topic_score_gemma":0.00035924106,"teacher_disagreement_score":0.99561363,"about_ca_system_score_codex":0.000052167114,"about_ca_system_score_gemma":0.00003443661,"threshold_uncertainty_score":0.5846539},"labels":[],"label_agreement":null},{"id":"W2024236935","doi":"10.1016/j.tim.2007.05.004","title":"Integrons: mobilizable platforms that promote genetic diversity in bacteria","year":2007,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":335,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Medical Research Council; National Health and Medical Research Council; Australian Research Council; Macquarie University","keywords":"Biology; Horizontal gene transfer; Genetic diversity; Genetics; Genome; Phylogenetic tree; Gene; Mobile genetic elements; Bacterial genome size; Evolutionary biology; Plasmid; Computational biology; Population","score_opus":0.020165234415542292,"score_gpt":0.26638740005649103,"score_spread":0.24622216564094873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024236935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979041,0.00032937268,0.00032076697,0.000024616045,0.0002998618,0.00013394815,0.000028595905,0.000013261464,0.00094546215],"genre_scores_gemma":[0.9952881,0.00011269895,0.0032128256,0.00011130164,0.00006190224,0.000003250063,0.00026919242,0.000020369453,0.0009203836],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99846417,0.00004214416,0.00034064156,0.00052916555,0.000037560374,0.00058633],"domain_scores_gemma":[0.9994043,0.000016488233,0.00010209191,0.00039973727,0.000022066519,0.00005532164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004178871,0.0002266748,0.00027641503,0.00025044454,0.000056198292,0.00001056744,0.00039266015,0.00039751426,0.00020404752],"category_scores_gemma":[0.000027981707,0.00020883612,0.00007363985,0.0002262483,0.00021575595,0.0000072005696,0.000484031,0.00018930086,0.000021230167],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022683154,0.00009126935,0.3277977,0.000009843757,0.000015664451,0.000034590736,0.0001186046,0.000007228727,0.6675466,0.000018863215,0.00033530255,0.0037975288],"study_design_scores_gemma":[0.0014498163,0.0003183815,0.7853158,0.00004486275,0.000009626345,0.00011900157,0.00021161769,0.000007454935,0.20269425,0.00017011233,0.009226618,0.00043245452],"about_ca_topic_score_codex":0.00012852058,"about_ca_topic_score_gemma":0.0036060936,"teacher_disagreement_score":0.4648523,"about_ca_system_score_codex":0.00008721454,"about_ca_system_score_gemma":0.000028266531,"threshold_uncertainty_score":0.851609},"labels":[],"label_agreement":null},{"id":"W2027064650","doi":"10.1016/s0966-842x(00)01814-x","title":"Renaming protein secretion in the Gram-negative bacteria","year":2000,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Secretion; Scopus; Virulence; Biology; Microbiology; Type three secretion system; Confusion; Type VI secretion system; Bacteria; Genetics; Biochemistry; Gene; MEDLINE","score_opus":0.01646135404862129,"score_gpt":0.281921879953112,"score_spread":0.2654605259044907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027064650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.79498535,0.0016766789,0.000010226352,0.19372158,0.00029274952,0.0010912481,0.00036776336,0.00002691666,0.007827463],"genre_scores_gemma":[0.48231632,0.0019389677,0.0028121506,0.43371692,0.008178831,0.003402482,0.02906636,0.00035604916,0.038211938],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970842,0.0010985163,0.00037203493,0.0006937546,0.00007588799,0.0006755855],"domain_scores_gemma":[0.99922425,0.00006739019,0.00012739212,0.0005269779,0.000037478374,0.000016534428],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004469311,0.00036982392,0.0003980535,0.00030271075,0.00006641794,0.000027193813,0.0006286556,0.0010826401,0.00016659839],"category_scores_gemma":[0.000106568754,0.0002778657,0.00012232682,0.00036468008,0.0003513957,0.0000030190379,0.00019684227,0.0015545402,0.000019567426],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000131812,0.00005280685,0.00019669347,0.000047462763,0.00007170801,0.00015219348,0.0003384532,0.000002667153,0.68438965,0.000004337217,0.31051838,0.004093842],"study_design_scores_gemma":[0.00069254456,0.00036280972,0.0014487787,0.00008859044,0.000011469928,0.000058699872,0.00006312532,0.000003411042,0.006828928,0.00009803252,0.9899378,0.00040581718],"about_ca_topic_score_codex":0.00017006998,"about_ca_topic_score_gemma":0.0011518574,"teacher_disagreement_score":0.6794194,"about_ca_system_score_codex":0.00007103914,"about_ca_system_score_gemma":0.00007111321,"threshold_uncertainty_score":0.99996734},"labels":[],"label_agreement":null},{"id":"W2028046041","doi":"10.1016/j.tim.2006.05.005","title":"Foundations of antibiotic resistance in bacterial physiology: the mycobacterial paradigm","year":2006,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Antibiotics; Mycobacterium tuberculosis; Biology; Antibiotic resistance; Tuberculosis; Cell envelope; Microbiology; Gene; Genetics; Medicine; Escherichia coli","score_opus":0.01858251346595077,"score_gpt":0.2984941719090846,"score_spread":0.27991165844313387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028046041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99468446,0.00016969438,0.000001671542,0.0017164715,0.00032699836,0.00016668385,0.0001054456,0.0000130732815,0.0028155104],"genre_scores_gemma":[0.9981731,0.0000607656,0.00023306327,0.00008362725,0.00028300568,0.00001582159,0.0007107037,0.000011113289,0.0004287822],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986377,0.0002248625,0.0004270708,0.0002746415,0.00004271018,0.00039304845],"domain_scores_gemma":[0.9992755,0.0002321351,0.000100765574,0.0003319846,0.00002856211,0.00003103461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002441337,0.00013558705,0.00040529517,0.0003186535,0.00003382041,0.000008801571,0.00016298176,0.00015236334,0.00077896396],"category_scores_gemma":[0.000081602164,0.00009648365,0.000080984246,0.00048095605,0.00035645592,0.00004174488,0.000054603537,0.00020641842,0.00002696382],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096315297,0.00029305456,0.058025617,0.000034685287,0.000016523249,0.000015740407,0.00006613011,0.0000016092868,0.93469834,0.0015143722,0.0040203435,0.00035040587],"study_design_scores_gemma":[0.0024233223,0.00016955435,0.9600335,0.00006952621,0.000016735803,0.000020339638,0.000012191855,0.0000020600455,0.02055245,0.00057525147,0.016024567,0.00010054269],"about_ca_topic_score_codex":0.00053981156,"about_ca_topic_score_gemma":0.005277163,"teacher_disagreement_score":0.9141459,"about_ca_system_score_codex":0.000075351476,"about_ca_system_score_gemma":0.000081650825,"threshold_uncertainty_score":0.85291094},"labels":[],"label_agreement":null},{"id":"W2029449254","doi":"10.1016/j.tim.2012.10.005","title":"Fake virus particles generated by fluorescence microscopy","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":105,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Virus; Fluorescence microscope; Virology; Fluorescence; Isolation (microbiology); Microbiology","score_opus":0.014538462900596719,"score_gpt":0.275895204502481,"score_spread":0.26135674160188427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029449254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977995,0.0002301425,0.000032889435,0.0002157557,0.0004183001,0.00004984862,0.00010719694,0.000035213827,0.0011111201],"genre_scores_gemma":[0.99541676,0.000048195896,0.001779354,0.0003915352,0.000046507186,0.00001267771,0.00014211594,0.000014615254,0.002148251],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988371,0.00009163691,0.00023182738,0.00025609412,0.000021177122,0.0005621809],"domain_scores_gemma":[0.99963796,0.000020864441,0.00006103415,0.00019037184,0.0000034295308,0.00008631293],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00011750058,0.0001538217,0.0001591922,0.000053762156,0.00007644239,0.000016631242,0.00018882837,0.000119278026,0.009402118],"category_scores_gemma":[0.0000070022666,0.00014002874,0.000046740035,0.00027506208,0.00022462205,0.00018835596,0.00013318313,0.00016891351,0.0015777589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001604456,0.00017147414,0.009426097,7.296232e-7,0.000005399489,0.000001520034,0.00020469681,0.0000051024654,0.9325644,0.0000053934345,0.046836775,0.010762381],"study_design_scores_gemma":[0.00024868338,0.000034572444,0.035968985,0.0000039224446,0.0000067404685,0.000051720854,0.000020545069,0.000011511293,0.7988675,0.0000036076708,0.16460489,0.0001773156],"about_ca_topic_score_codex":0.0008444793,"about_ca_topic_score_gemma":0.0006064377,"teacher_disagreement_score":0.13369687,"about_ca_system_score_codex":0.00012354761,"about_ca_system_score_gemma":0.0000028886109,"threshold_uncertainty_score":0.9991996},"labels":[],"label_agreement":null},{"id":"W2031757246","doi":"10.1016/j.tim.2006.09.006","title":"Microbial rhodopsins: functional versatility and genetic mobility","year":2006,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":213,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Horizontal gene transfer; Phylogenetic tree; Rhodopsin; Evolutionary biology; Phylogenetics; Three-domain system; Genetics; Gene; Computational biology; Genome; Botany","score_opus":0.12867375134879588,"score_gpt":0.37880554943001793,"score_spread":0.25013179808122205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031757246","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008359023,0.9883659,0.000012583722,0.00001286776,0.0006893657,0.00043892872,0.0010165058,0.000043062482,0.0010617707],"genre_scores_gemma":[0.001190422,0.99684083,0.00023694367,0.000049958682,0.00015661726,0.00008171461,0.00041880083,0.00004461007,0.0009801106],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99619657,0.0010363706,0.0007190856,0.0012882861,0.00009196765,0.0006677319],"domain_scores_gemma":[0.99867976,0.00051736017,0.0001691457,0.0005152896,0.000026269154,0.00009220248],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028196332,0.00047736694,0.0012189869,0.00064031564,0.00010563842,0.00004156334,0.000468374,0.0006188316,0.00081059395],"category_scores_gemma":[0.00013654526,0.00041642715,0.00028125857,0.0006961161,0.00084062683,0.000033776647,0.0003685294,0.00075675914,0.00010907993],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043630334,0.0002881382,0.00015201617,0.0015012204,0.00001819715,0.000044886263,0.000024543264,0.0000033870847,0.05266142,0.000020681906,0.0032585748,0.9419833],"study_design_scores_gemma":[0.00040830392,0.00008071958,0.00056401815,0.00022438364,0.000054634304,0.00036594854,0.0000010819838,0.000006429183,0.00158433,0.000040764313,0.9962778,0.0003915657],"about_ca_topic_score_codex":0.00008941554,"about_ca_topic_score_gemma":0.00019468841,"teacher_disagreement_score":0.9930192,"about_ca_system_score_codex":0.00026702273,"about_ca_system_score_gemma":0.00018806107,"threshold_uncertainty_score":0.99982876},"labels":[],"label_agreement":null},{"id":"W2031984687","doi":"10.1016/j.tim.2014.01.007","title":"To acquire or resist: the complex biological effects of CRISPR–Cas systems","year":2014,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"CRISPR; Biology; Computational biology; DNA; Palindrome; Genetics; Gene","score_opus":0.04346834040777872,"score_gpt":0.39200758900864907,"score_spread":0.3485392486008704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031984687","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00044100432,0.9965455,0.0015764234,0.000030424384,0.0006124334,0.0005174754,0.00010392749,0.000013987274,0.0001588576],"genre_scores_gemma":[0.0074811904,0.9895003,0.00034137713,0.00011184605,0.00040381134,0.00019826884,0.0008951166,0.000057904555,0.0010101752],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977588,0.0004736585,0.00069284276,0.0005996366,0.000037975115,0.00043706028],"domain_scores_gemma":[0.99874556,0.00021195161,0.00020217207,0.00073935714,0.00003477881,0.00006615968],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00033033246,0.00044673725,0.0014735566,0.00022123111,0.000040669966,0.000011321181,0.0006999989,0.0007193726,0.000032199157],"category_scores_gemma":[0.00015680074,0.00025265507,0.00033835412,0.0003264461,0.0001668529,6.108539e-7,0.0003452238,0.00021979497,0.000022669858],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001495665,0.00014599836,0.00003883349,0.012783672,0.00050651736,0.000037388683,0.00009431597,0.00013884407,0.12934259,0.0001228099,0.029104155,0.82753533],"study_design_scores_gemma":[0.00023466855,0.0005301859,0.0000648203,0.0010983081,0.00010667371,0.00015589662,0.000008926562,0.0000017997228,0.0019979551,0.0000012108798,0.9954824,0.00031716502],"about_ca_topic_score_codex":0.000024514728,"about_ca_topic_score_gemma":0.00008144122,"teacher_disagreement_score":0.9663782,"about_ca_system_score_codex":0.000030372474,"about_ca_system_score_gemma":0.00004795439,"threshold_uncertainty_score":0.99999255},"labels":[],"label_agreement":null},{"id":"W2032419921","doi":"10.1016/j.tim.2015.01.005","title":"Is selection relevant in the evolutionary emergence of drug resistance?","year":2015,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"National Institute of General Medical Sciences; Science and Technology Directorate; National Institutes of Health; U.S. Department of Homeland Security","keywords":"Biology; Selection (genetic algorithm); Natural selection; Context (archaeology); Resistance (ecology); Population; Drug resistance; Evolutionary biology; Negative selection; Strain (injury); Ecology; Genetics; Demography; Gene; Computer science; Artificial intelligence; Genome","score_opus":0.027154539361070953,"score_gpt":0.33548496173840203,"score_spread":0.3083304223773311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032419921","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00034633448,0.9976928,0.000034950284,0.000100991,0.00020354144,0.00017998257,0.00016312902,0.000004258833,0.0012739873],"genre_scores_gemma":[0.0007565263,0.99173176,0.0005288534,0.00007598457,0.0000817937,0.000047259062,0.0014346906,0.000021448468,0.0053216955],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99802655,0.00053980615,0.00064152176,0.0004582182,0.00005833084,0.00027555696],"domain_scores_gemma":[0.9992075,0.000023479472,0.00027154785,0.0004036659,0.000069276204,0.000024543906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005488851,0.00025828855,0.0006250094,0.00027798032,0.00002577345,0.000002848521,0.00045282952,0.0004499166,0.00007915043],"category_scores_gemma":[0.00003680341,0.00019473057,0.00021200883,0.0006148016,0.00016571984,0.0000015353505,0.000100287616,0.0002921931,0.000012868794],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015339714,0.0005220036,0.0005347784,0.0028456538,0.0002244426,0.000013000863,0.0007294481,0.00008927386,0.0040373513,0.0007737261,0.710647,0.27942994],"study_design_scores_gemma":[0.00020119624,0.00005594547,0.00006459376,0.0003113914,0.000049773324,0.00006609975,0.00004428572,0.000009845424,0.000018205568,0.00010988414,0.9988699,0.00019887832],"about_ca_topic_score_codex":0.00002858885,"about_ca_topic_score_gemma":0.001721364,"teacher_disagreement_score":0.2882229,"about_ca_system_score_codex":0.00005387469,"about_ca_system_score_gemma":0.00022476587,"threshold_uncertainty_score":0.79408824},"labels":[],"label_agreement":null},{"id":"W2033470486","doi":"10.1016/s0966-842x(02)02343-0","title":"Bacterial avoidance of phagocytosis","year":2002,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phagocytosis; Biology; Virulence; Microbiology; Innate immune system; Intracellular; Intracellular parasite; Bacteria; Receptor; Cell biology; Gene; Genetics","score_opus":0.04986964171895362,"score_gpt":0.35079652136541833,"score_spread":0.3009268796464647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033470486","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012511709,0.9967713,0.0000024110957,0.00001273682,0.00035108582,0.00018044177,0.0006170212,0.0000074704226,0.0008063744],"genre_scores_gemma":[0.00032282222,0.9953987,0.00019704417,0.000010467938,0.00030276866,0.00007962281,0.0017991631,0.000047032732,0.0018423833],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997758,0.00039978785,0.00068036595,0.00063292583,0.00004109901,0.00048786026],"domain_scores_gemma":[0.9989843,0.000041285617,0.00031984225,0.00056606927,0.000044740504,0.0000437623],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019212392,0.0004214144,0.0015771457,0.0003662011,0.000028999959,0.000007905589,0.00054513564,0.00065140065,0.00044516646],"category_scores_gemma":[0.00008637853,0.00035704678,0.0004285032,0.0003121512,0.00032415477,0.0000018836196,0.00045973505,0.0002695873,0.000042376345],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043304975,0.00011363489,0.0000134201355,0.0018801771,0.00031691627,0.000009388101,0.000020188267,1.7510948e-7,0.10900954,0.0000059879935,0.007882928,0.88070434],"study_design_scores_gemma":[0.0003959945,0.00023399071,0.000011168835,0.0007141833,0.000079352525,0.000055771954,0.0000024385176,8.349517e-8,0.0026194814,0.0000010334047,0.9955941,0.0002924168],"about_ca_topic_score_codex":0.000012961421,"about_ca_topic_score_gemma":0.00007933299,"teacher_disagreement_score":0.98771113,"about_ca_system_score_codex":0.000051791805,"about_ca_system_score_gemma":0.00007592937,"threshold_uncertainty_score":0.9998881},"labels":[],"label_agreement":null},{"id":"W2036150573","doi":"10.1016/s0966-842x(02)00032-x","title":"Bacterial signal transduction: a FHAscinating glimpse at the origins of phospho-dependent signal transduction","year":2003,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Biology; Signal transduction; Archaea; Bacteria; Cell biology; Computational biology; Phosphorylation; Signalling; Bacterial protein; Gene; Genetics","score_opus":0.013310323008737924,"score_gpt":0.23613100423889646,"score_spread":0.22282068123015855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036150573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96443576,0.003947106,0.00009667664,0.027514929,0.0022147486,0.00033331677,0.0009594801,0.0000068595555,0.00049114926],"genre_scores_gemma":[0.9574485,0.001120916,0.00047601122,0.025720263,0.0050090686,0.00014965502,0.004334434,0.00015195025,0.0055892062],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975969,0.000351946,0.00064138585,0.0007758847,0.000089743284,0.0005441256],"domain_scores_gemma":[0.9991049,0.000040126044,0.00030640032,0.0004361156,0.00008304652,0.000029372137],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00031144678,0.0004708624,0.0005709172,0.0001597062,0.00014463534,0.000013711125,0.0003804598,0.0009949723,0.0018329698],"category_scores_gemma":[0.0000069127664,0.0003812555,0.0003286532,0.0001751254,0.00041726002,0.0000012080802,0.000090110065,0.00063698605,0.000007702942],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001809203,0.00005262137,0.00011471001,0.000035118454,0.00023553708,0.000013149022,0.00020402034,0.00009156304,0.91105217,0.000005389731,0.08461851,0.003396323],"study_design_scores_gemma":[0.00089943706,0.00039634036,0.00008541845,0.000012930551,0.00009474264,0.00022856046,0.00004902182,0.0000011877901,0.40042415,0.000019972675,0.5974635,0.000324786],"about_ca_topic_score_codex":0.000145846,"about_ca_topic_score_gemma":0.000507354,"teacher_disagreement_score":0.512845,"about_ca_system_score_codex":0.00015523071,"about_ca_system_score_gemma":0.00009344457,"threshold_uncertainty_score":0.9998639},"labels":[],"label_agreement":null},{"id":"W2041024561","doi":"10.1016/j.tim.2005.03.012","title":"Does the ‘Ring of Life’ ring true?","year":2005,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Tree of life (biology); Phylogenetic tree; Biology; Genome; Horizontal gene transfer; Evolutionary biology; Ring (chemistry); Phylogenetics; Tree (set theory); Gene; Representation (politics); Genetics; Combinatorics","score_opus":0.02845104464203285,"score_gpt":0.30394992932994497,"score_spread":0.2754988846879121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041024561","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0035772545,0.9946991,0.0000027203223,0.000045694087,0.0003995952,0.00013586335,0.00013147428,0.0000021944022,0.0010061021],"genre_scores_gemma":[0.006220453,0.9920791,0.00017550706,0.00005256123,0.00043208175,0.000040762436,0.00016497655,0.000034645665,0.000799931],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998448,0.00017103925,0.0005890909,0.00044358172,0.000023150471,0.00032509398],"domain_scores_gemma":[0.9990919,0.000051903662,0.00029183962,0.00051148137,0.00002306096,0.000029770179],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022211495,0.00033296214,0.0009602242,0.00014683043,0.000049236816,0.0000063358716,0.00050500873,0.0003912835,0.000037605405],"category_scores_gemma":[0.00003538245,0.00017084363,0.0003593822,0.00015131413,0.00020671157,2.6555756e-7,0.00037237623,0.00021534682,0.000006805851],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009509641,0.000031522974,0.00009150096,0.00042276524,0.0002772521,9.869133e-7,0.00004878247,0.000011052591,0.010373797,0.000040998773,0.00035501987,0.9883368],"study_design_scores_gemma":[0.00018997808,0.000056458215,0.00006711694,0.00023508685,0.00011283132,0.000021558739,0.000017227294,4.19872e-7,0.00032554963,0.000007111212,0.99874145,0.00022523702],"about_ca_topic_score_codex":0.000019718858,"about_ca_topic_score_gemma":0.00026275835,"teacher_disagreement_score":0.9983864,"about_ca_system_score_codex":0.000019040539,"about_ca_system_score_gemma":0.0000740223,"threshold_uncertainty_score":0.69668007},"labels":[],"label_agreement":null},{"id":"W2043338521","doi":"10.1016/j.tim.2014.04.002","title":"Post-exposure therapy of filovirus infections","year":2014,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; Public Health Agency of Canada","keywords":"Biology; Virology; Intensive care medicine; Medicine","score_opus":0.06816431670168548,"score_gpt":0.4170616872268452,"score_spread":0.34889737052515973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043338521","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000695285,0.994383,0.0000058351507,0.00005992496,0.000258892,0.00031829873,0.0001987664,0.000032914457,0.004047092],"genre_scores_gemma":[0.0007523714,0.9944212,0.000050600083,0.00007474383,0.00015429224,0.00007109191,0.0009354178,0.00004004622,0.0035002262],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982653,0.0003374493,0.00066955516,0.00034934015,0.000043425232,0.00033491672],"domain_scores_gemma":[0.99904567,0.00016754237,0.00020336795,0.00041449926,0.00010787109,0.00006104313],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002930749,0.00029905527,0.0018938566,0.0014609039,0.00003889962,0.0000055900946,0.00013804925,0.00065746595,0.0017877909],"category_scores_gemma":[0.000048125312,0.00020843561,0.0006083059,0.0008270368,0.00020615035,0.000018311786,0.000066630055,0.00076833536,0.00017263164],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002439779,0.00029364505,0.00014896506,0.0013095534,0.00018284997,0.000009304758,0.000016720083,2.2920456e-7,0.0015319012,0.000046765446,0.0011542174,0.99528146],"study_design_scores_gemma":[0.00071329507,0.0014924336,0.000114349816,0.0013216961,0.00010303762,0.00055358233,0.0000028320271,3.5186267e-7,0.00007665453,0.0000036556269,0.9954603,0.00015785905],"about_ca_topic_score_codex":0.00025912107,"about_ca_topic_score_gemma":0.00018593468,"teacher_disagreement_score":0.99512357,"about_ca_system_score_codex":0.00009883672,"about_ca_system_score_gemma":0.00017379073,"threshold_uncertainty_score":0.9991247},"labels":[],"label_agreement":null},{"id":"W2045504198","doi":"10.1016/j.tim.2006.10.002","title":"Chlamydiae-specific proteins and indels: novel tools for studies","year":2006,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Health Sciences; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Chlamydiae; Biology; Genetics; Obligate; Gene; Intracellular parasite; Comparative genomics; Human pathogen; Obligate parasite; Horizontal gene transfer; Genomics; Computational biology; Genome; Bacteria; Host (biology)","score_opus":0.24667144002103805,"score_gpt":0.42967825124503356,"score_spread":0.1830068112239955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045504198","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00027659582,0.9949177,0.00006353898,0.00007552135,0.0012120284,0.0018898482,0.00095914275,0.00007924431,0.0005264063],"genre_scores_gemma":[0.000056981204,0.9871938,0.00050706917,0.000013445257,0.00020208246,0.0019001173,0.0029416478,0.000085139756,0.0070997165],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960249,0.0005371717,0.0010870245,0.0013999448,0.000020331378,0.00093060324],"domain_scores_gemma":[0.9971488,0.0015245974,0.00039753586,0.0007289545,0.00017881047,0.000021304773],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0009430626,0.00071986695,0.0027035621,0.0015888319,0.0002258543,0.000041235773,0.00044877708,0.0013693487,0.0001567876],"category_scores_gemma":[0.00037474252,0.0005737213,0.00042345995,0.00073439,0.0011721868,0.00013859839,0.0003221556,0.0012619174,0.00017982213],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046929275,0.00034145341,0.000009708035,0.0020983503,0.0007199275,0.0000047739604,0.000084818515,0.0000010499464,0.010016441,0.0006206485,0.009058747,0.97699714],"study_design_scores_gemma":[0.0010833364,0.00029112096,0.000036038964,0.0010402744,0.00016381947,0.00052990706,0.000040692637,4.2201297e-8,0.00034043973,0.00005595082,0.9959017,0.000516687],"about_ca_topic_score_codex":0.000038827035,"about_ca_topic_score_gemma":0.00012293228,"teacher_disagreement_score":0.98684293,"about_ca_system_score_codex":0.00034740136,"about_ca_system_score_gemma":0.00014782634,"threshold_uncertainty_score":0.9999271},"labels":[],"label_agreement":null},{"id":"W2048854895","doi":"10.1016/j.tim.2004.04.001","title":"Did trypanosomatid parasites have photosynthetic ancestors?","year":2004,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Plastid; Chloroplast; Apicoplast; Lineage (genetic); Phylogenetics; Botany; Endosymbiosis; Evolutionary biology; Photosynthesis; Ultrastructure; Algae; Genome; Gene; Genetics","score_opus":0.013352801537340699,"score_gpt":0.2564031720945487,"score_spread":0.24305037055720802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048854895","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965641,0.0006064147,0.00010165802,0.00017459631,0.00016988369,0.000075522206,0.000088123874,0.000014171546,0.002205522],"genre_scores_gemma":[0.9979782,0.00006888998,0.0006525296,0.00032477645,0.00007586387,0.000012313847,0.00036087798,0.00001136056,0.0005152052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905723,0.00006483091,0.00016898541,0.00037026673,0.00002526268,0.00031340917],"domain_scores_gemma":[0.9995946,0.00000852679,0.00006078721,0.0002726324,0.000017746514,0.000045695237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006223661,0.00016310108,0.00018551601,0.00011305219,0.000060284798,0.000008203708,0.00026035885,0.00024162348,0.00013063881],"category_scores_gemma":[0.000019269371,0.00016190943,0.00008763172,0.00010724214,0.00018738178,0.000003009818,0.00010362387,0.000115578114,0.00005701716],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007085638,0.000107539876,0.03692577,0.000006104616,0.000026502981,0.000015218797,0.00010589899,0.00009779477,0.9604928,0.00011243721,0.0005082675,0.0015308192],"study_design_scores_gemma":[0.0015797252,0.0004125806,0.049303498,0.000020586182,0.000015276964,0.00015296026,0.000051150237,0.0000016899935,0.9275798,0.00052741216,0.019993704,0.0003615897],"about_ca_topic_score_codex":0.00007345232,"about_ca_topic_score_gemma":0.0005049367,"teacher_disagreement_score":0.032912962,"about_ca_system_score_codex":0.000029813693,"about_ca_system_score_gemma":0.000030872034,"threshold_uncertainty_score":0.66024745},"labels":[],"label_agreement":null},{"id":"W2050356851","doi":"10.1016/j.tim.2008.07.002","title":"Campylobacter sugars sticking out","year":2008,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":124,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of Alberta","funders":"","keywords":"Glycobiology; Biology; Campylobacter jejuni; Glycome; Glycan; Glycoconjugate; Campylobacter; Computational biology; Microbiology; Biochemistry; Bacteria; Genetics; Glycoprotein","score_opus":0.10318850861906963,"score_gpt":0.3329223767166172,"score_spread":0.22973386809754753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050356851","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0027786477,0.9937606,4.007901e-7,0.00008397673,0.000914383,0.000203103,0.00030740662,0.00009299476,0.0018584765],"genre_scores_gemma":[0.00018695064,0.99431586,0.000055623914,0.00023517292,0.00056887814,0.00005567413,0.0030804875,0.000006081928,0.0014952576],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959815,0.0009144015,0.001079128,0.0010048996,0.00004995991,0.00097012444],"domain_scores_gemma":[0.9982695,0.0009437836,0.00044892958,0.00019615023,0.000029345183,0.00011228049],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002750704,0.00069161574,0.0026017958,0.00015768805,0.000108901826,0.0000190092,0.00082098314,0.0012653718,0.0016397076],"category_scores_gemma":[0.00007077498,0.0002562102,0.00076614326,0.0006351279,0.00025495602,0.000042985484,0.00025366605,0.00076869235,0.0006237417],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000060826483,0.000055165547,0.000418891,0.00010131815,0.00005139809,0.00007261049,0.000030891224,9.2477414e-8,0.00036413275,0.000020393556,0.0054659317,0.9934131],"study_design_scores_gemma":[0.000098332406,0.000103201186,0.00075540657,0.000611126,0.0000691472,0.0007559395,0.000009837688,2.1357879e-7,0.0000020633183,0.000024853418,0.9970306,0.000539239],"about_ca_topic_score_codex":0.00014398937,"about_ca_topic_score_gemma":0.00145363,"teacher_disagreement_score":0.99287385,"about_ca_system_score_codex":0.00015457034,"about_ca_system_score_gemma":0.00002795372,"threshold_uncertainty_score":0.99998903},"labels":[],"label_agreement":null},{"id":"W2051765741","doi":"10.1016/j.tim.2013.05.007","title":"An encapsulation of iron homeostasis and virulence in Cryptococcus neoformans","year":2013,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Ministry of Education, Science and Technology; National Research Foundation of Korea; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Burroughs Wellcome Fund","keywords":"Cryptococcus neoformans; Biology; Virulence; Microbiology; Cryptococcosis; Homeostasis; Iron homeostasis; Cryptococcus; Encapsulation (networking); Cell biology; Genetics; Gene","score_opus":0.05020744194430722,"score_gpt":0.3743772763056707,"score_spread":0.3241698343613635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051765741","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01829055,0.9806874,0.000002839294,0.000016329539,0.00010052166,0.0003189465,0.00005773709,0.000010738226,0.0005149514],"genre_scores_gemma":[0.0050772754,0.9941607,0.00024322298,0.000012920047,0.000030066925,0.000078980025,0.00027552276,0.0000130070375,0.0001082635],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988903,0.00011180574,0.00051475986,0.00026240564,0.000019240646,0.00020150053],"domain_scores_gemma":[0.99951714,0.00006384017,0.00015996011,0.00020527482,0.000025160134,0.000028622915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014925933,0.00020793799,0.001184783,0.00076393597,0.000021130358,0.0000035615042,0.00005915818,0.00030532465,0.00018254027],"category_scores_gemma":[0.000016217293,0.00015375396,0.000087544395,0.00038251642,0.00014612553,0.000047666803,0.000043430995,0.0002731928,0.000013181939],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007561978,0.00009995799,0.0009884896,0.0021248853,0.00002542347,0.0000041961216,0.00015862478,8.974572e-7,0.0006240715,0.000037834667,0.0001511749,0.9957769],"study_design_scores_gemma":[0.0014084536,0.0014761838,0.015233944,0.007635561,0.0004798526,0.00033539886,0.00013219577,0.000022934893,0.000060231374,0.00003525078,0.9726405,0.0005395069],"about_ca_topic_score_codex":0.00025440834,"about_ca_topic_score_gemma":0.00025135526,"teacher_disagreement_score":0.99523735,"about_ca_system_score_codex":0.00007734616,"about_ca_system_score_gemma":0.000030276533,"threshold_uncertainty_score":0.6269905},"labels":[],"label_agreement":null},{"id":"W2051906628","doi":"10.1016/s0966-842x(01)01981-3","title":"Lessons and questions from the structure of the Spo0A activation domain","year":2001,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Bacillus subtilis; Regulator; Domain (mathematical analysis); Computational biology; Cell biology; Genetics; Gene; Bacteria","score_opus":0.00793131782827664,"score_gpt":0.24361394573142212,"score_spread":0.23568262790314548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051906628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99507684,0.00027562983,0.000034525077,0.0042285933,0.00013337319,0.00005219203,0.00014263569,0.0000032104406,0.000053008338],"genre_scores_gemma":[0.9989994,0.00017479791,0.00026691967,0.00023023944,0.0000834552,0.0000015331713,0.0001625648,0.000005977897,0.00007508664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994556,0.00008197606,0.00013189351,0.00019118593,0.000013958548,0.00012542645],"domain_scores_gemma":[0.9995974,0.000016182883,0.00007093543,0.0002885797,0.000017013674,0.000009917798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004942626,0.00008732065,0.00009831036,0.000030590818,0.00005150392,0.0000052050245,0.0002073491,0.0002780648,0.00003692914],"category_scores_gemma":[0.000020824662,0.000050946925,0.00003206705,0.00012222589,0.00026959626,0.0000010772235,0.00014692305,0.000118781776,3.5912745e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003145547,0.000013164865,0.0076732817,6.080575e-7,0.00001507942,1.9083095e-7,0.00003469904,0.0000043468112,0.98618525,0.00030877162,0.00029937582,0.0054337573],"study_design_scores_gemma":[0.00037732648,0.000074080766,0.14707766,0.000009275971,0.000009697491,0.000032692347,0.000053704574,0.0000012633129,0.7973804,0.0012530931,0.053643804,0.00008699377],"about_ca_topic_score_codex":0.00014250205,"about_ca_topic_score_gemma":0.0017416603,"teacher_disagreement_score":0.18880486,"about_ca_system_score_codex":0.000006104154,"about_ca_system_score_gemma":0.000015410782,"threshold_uncertainty_score":0.21446905},"labels":[],"label_agreement":null},{"id":"W2054353316","doi":"10.1016/j.tim.2006.12.001","title":"Importance of widespread gene transfer agent genes in α-proteobacteria","year":2006,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":218,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Memorial University of Newfoundland","funders":"","keywords":"Biology; Prophage; Genetics; Gene; Rhodobacter; Genome; Bacteriophage; Proteobacteria; Horizontal gene transfer; Gene cluster; ENCODE; Computational biology; Escherichia coli","score_opus":0.034030180520301205,"score_gpt":0.30955778384138266,"score_spread":0.27552760332108145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054353316","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.060544096,0.9360054,0.000013594633,0.000021849355,0.00058600405,0.0004859753,0.0006681561,0.000021098844,0.0016538022],"genre_scores_gemma":[0.0018600619,0.994782,0.0005916063,0.00003119493,0.00004875567,0.000106325795,0.0010705028,0.000049580784,0.0014599886],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99762976,0.00020835923,0.001080943,0.0006107227,0.000030848663,0.00043935544],"domain_scores_gemma":[0.9992949,0.000048710463,0.00021517635,0.0004010719,0.0000041873045,0.000035986646],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001727774,0.00041217683,0.0013584811,0.00030974735,0.000025480003,0.000008897948,0.00042212242,0.0003977865,0.004022468],"category_scores_gemma":[0.000004458593,0.00035753084,0.000344138,0.00054817327,0.0002348649,0.00007177528,0.0001457507,0.00036225858,0.0001542646],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011885432,0.00019537554,0.00043650006,0.0004112308,0.000028298698,0.000043060416,0.000044701526,0.00001079768,0.24189521,0.0000031723075,0.0006452039,0.7562746],"study_design_scores_gemma":[0.0002395519,0.0000510603,0.0033031716,0.00077319844,0.000074085634,0.0001586399,0.0000019822517,3.4392485e-7,0.0017580441,0.000003308978,0.9932839,0.0003527105],"about_ca_topic_score_codex":0.0013347736,"about_ca_topic_score_gemma":0.012086784,"teacher_disagreement_score":0.9926387,"about_ca_system_score_codex":0.00036131352,"about_ca_system_score_gemma":0.000019203166,"threshold_uncertainty_score":0.99988765},"labels":[],"label_agreement":null},{"id":"W2057158058","doi":"10.1016/j.tim.2012.02.004","title":"Stress responses as determinants of antimicrobial resistance in Gram-negative bacteria","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Antimicrobial; Bacteria; Microbiology; Antibiotic resistance; Gram-negative bacteria; Cell envelope; Biofilm; Pathogenic bacteria; Genetics; Gene; Escherichia coli","score_opus":0.03254250514805685,"score_gpt":0.32606217785369596,"score_spread":0.2935196727056391,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057158058","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.30177554,0.6959143,1.9110715e-7,0.000009801651,0.0006210266,0.00023868452,0.0011768223,0.0000066930766,0.0002569108],"genre_scores_gemma":[0.029593313,0.9660039,0.0009201106,0.000037334834,0.0002662979,0.000021899303,0.0017490579,0.000080950726,0.0013271241],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99685663,0.00075062836,0.0010246931,0.0006922274,0.000033491775,0.00064235437],"domain_scores_gemma":[0.998653,0.00008151908,0.00061676215,0.0005469187,0.00004345052,0.00005836363],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035189552,0.0005330522,0.0016931186,0.00049526594,0.000031665786,0.000013471509,0.0003955751,0.0011036482,0.000074411044],"category_scores_gemma":[0.00008974202,0.00047788612,0.0003105076,0.00036152996,0.0003267255,0.000006268233,0.0002680018,0.00031666606,0.000015965792],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067381427,0.0002212637,0.0005698168,0.002349217,0.00009225889,0.0000463511,0.000110151705,8.364945e-8,0.70235324,0.000013810477,0.0003025106,0.29326752],"study_design_scores_gemma":[0.00087593275,0.00020068444,0.00076521176,0.005336545,0.00016441778,0.00019058003,0.000015578215,3.1730426e-8,0.096910164,0.0000036436134,0.8947122,0.0008250106],"about_ca_topic_score_codex":0.00012219077,"about_ca_topic_score_gemma":0.003850486,"teacher_disagreement_score":0.8944097,"about_ca_system_score_codex":0.000057285328,"about_ca_system_score_gemma":0.00017561758,"threshold_uncertainty_score":0.9997673},"labels":[],"label_agreement":null},{"id":"W2060306551","doi":"10.1016/s0966-842x(00)01823-0","title":"The role of cationic antimicrobial peptides in innate host defences","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":1213,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Heart, Lung, and Blood Institute","keywords":"Biology; Antimicrobial peptides; Innate immune system; Antimicrobial; Microbiology; Beta defensin; Host (biology); Antifungal; Cationic polymerization; Inflammation; Antibacterial peptide; Bacteria; Immunology; Immune system; Antibacterial activity; Ecology; Genetics; Chemistry","score_opus":0.018587439155549685,"score_gpt":0.2824068007323553,"score_spread":0.26381936157680563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060306551","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004015378,0.99168086,2.5080791e-7,0.00005153826,0.0006729231,0.00034496133,0.00046231857,0.00003265626,0.0027391117],"genre_scores_gemma":[0.015913006,0.9796951,0.000030410967,0.000032360043,0.000051668707,0.000057499186,0.0010655194,0.000053177442,0.003101286],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959568,0.00090236164,0.0015068577,0.0007002699,0.000020449694,0.00091327616],"domain_scores_gemma":[0.9980343,0.00062677596,0.00071600196,0.00056757295,0.000038535938,0.000016823495],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005046386,0.0006514535,0.0022106844,0.0009475016,0.00020169119,0.0000293688,0.0010479959,0.0011312591,0.00042693378],"category_scores_gemma":[0.00003777753,0.00045984436,0.00054651254,0.0008668931,0.0014601513,0.00009112751,0.00022972257,0.0011521628,0.0003200901],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000083626364,0.00020116565,0.00014254871,0.0005310907,0.0002276422,0.0000080322825,0.00029142664,0.000003530952,0.014099457,0.00055931933,0.0021531223,0.98169905],"study_design_scores_gemma":[0.000465132,0.00009020993,0.00004595794,0.0024915652,0.00012894745,0.00021987893,0.00011994502,1.620846e-7,0.0018479116,0.00008480812,0.99403596,0.00046952316],"about_ca_topic_score_codex":0.00079286855,"about_ca_topic_score_gemma":0.0025775118,"teacher_disagreement_score":0.99188286,"about_ca_system_score_codex":0.00013711487,"about_ca_system_score_gemma":0.00026876415,"threshold_uncertainty_score":0.9997853},"labels":[],"label_agreement":null},{"id":"W2061553335","doi":"10.1016/j.tim.2012.02.007","title":"Bacterial effector interplay: a new way to view effector function","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Michael Smith Health Research BC; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Effector; Biology; Virulence; Function (biology); Secretion; Host (biology); Cell biology; Microbiology; Computational biology; Genetics; Gene","score_opus":0.013343657947144543,"score_gpt":0.307192643421776,"score_spread":0.29384898547463145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061553335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966625,0.0006122885,0.00022603126,0.0001847641,0.0015098873,0.00025897042,0.00009556336,0.000024847011,0.00042517693],"genre_scores_gemma":[0.99444824,0.000024199853,0.00040408914,0.0004491677,0.0011540371,0.000050239723,0.0018213876,0.000041998712,0.001606655],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979684,0.00037028547,0.00029608625,0.00050387904,0.000050636936,0.0008107588],"domain_scores_gemma":[0.9991442,0.000058350328,0.00006285152,0.00043950285,0.000033153636,0.00026196928],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00039014907,0.00028970407,0.000356906,0.0003077869,0.00004264968,0.000024992196,0.0003006489,0.00036465083,0.0010863959],"category_scores_gemma":[0.00011729424,0.00026647226,0.00012626809,0.00031495886,0.00007139619,0.000010571646,0.00027379187,0.00022062378,0.0009814466],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009881497,0.0000977925,0.0153980125,0.0000190972,0.000054342843,0.0000025046072,0.00007945681,0.0000017148858,0.93147284,0.0000044979956,0.029149823,0.0227318],"study_design_scores_gemma":[0.0016234762,0.0015250244,0.12280945,0.00003684668,0.00002556039,0.00011833246,0.0000075257085,0.000001748052,0.36909714,0.000001500913,0.5043349,0.00041846946],"about_ca_topic_score_codex":0.00009065306,"about_ca_topic_score_gemma":0.00034222807,"teacher_disagreement_score":0.56237566,"about_ca_system_score_codex":0.000085979744,"about_ca_system_score_gemma":0.000037119724,"threshold_uncertainty_score":0.9999787},"labels":[],"label_agreement":null},{"id":"W2063876354","doi":"10.1016/j.tim.2009.08.007","title":"Can filamentous fungi form biofilms?","year":2009,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":283,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture Food and Rural Development; Petro Geotech (Canada)","funders":"","keywords":"Biofilm; Biology; Virulence; Microbiology; Microorganism; Yeast; Bacteria; Microbial ecology; Ecology; Genetics; Gene","score_opus":0.023657815631325296,"score_gpt":0.29698905573190204,"score_spread":0.27333124010057674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063876354","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010230426,0.9961733,5.89247e-7,0.000051175062,0.0006057568,0.0002128091,0.00046347873,0.000023063523,0.0014467362],"genre_scores_gemma":[0.0004248447,0.98684996,0.00034336685,0.00024250046,0.00049543445,0.000016155489,0.0089273555,0.000063229076,0.0026371614],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975096,0.0001853754,0.00069437147,0.00084651075,0.000033039876,0.00073112675],"domain_scores_gemma":[0.9989358,0.00001629795,0.00030875733,0.00062630995,0.000026230695,0.00008659152],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00017849015,0.0006199799,0.0013721299,0.00039317505,0.00005762593,0.000030179506,0.00040277568,0.0013038523,0.00013813809],"category_scores_gemma":[0.000015758598,0.000522786,0.0005073082,0.0003158264,0.0001230854,0.0000020027796,0.00019061241,0.00036358708,0.00004469446],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015016629,0.000046269284,0.0000017106161,0.00023067223,0.000073406096,0.000019853036,0.000009559783,9.8501964e-8,0.15901339,0.00002057182,0.0052108676,0.83535856],"study_design_scores_gemma":[0.00029659522,0.00030712635,0.0000094986635,0.00064434105,0.00012283401,0.00039359284,0.000003851336,1.0302336e-7,0.001871079,0.000004575997,0.99577695,0.0005694464],"about_ca_topic_score_codex":0.000044006076,"about_ca_topic_score_gemma":0.000399149,"teacher_disagreement_score":0.9905661,"about_ca_system_score_codex":0.00008188535,"about_ca_system_score_gemma":0.00012998095,"threshold_uncertainty_score":0.99999267},"labels":[],"label_agreement":null},{"id":"W2065505308","doi":"10.1016/j.tim.2004.03.002","title":"Have archaeal genes contributed to bacterial virulence?","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Killam Trusts; Canada Research Chairs","keywords":"Biology; Virulence; Gene; Microbiology; Genetics; Computational biology","score_opus":0.028337867033522382,"score_gpt":0.31574153246542574,"score_spread":0.2874036654319034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065505308","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0038086113,0.9933999,0.000022226819,0.000044611737,0.0007701632,0.00035122005,0.001396138,0.0000053976114,0.00020171779],"genre_scores_gemma":[0.00084374315,0.99434453,0.00055503467,0.00008142568,0.00057103357,0.00014350246,0.0027347666,0.000058207173,0.00066774467],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976503,0.00019620414,0.0006359188,0.0008606992,0.000032566055,0.00062429963],"domain_scores_gemma":[0.9991277,0.000027392287,0.00019131339,0.0005054342,0.00004884535,0.0000993249],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018316695,0.00054921967,0.0013666161,0.00032054327,0.00005852143,0.00001539739,0.00052442815,0.0007155199,0.00007196921],"category_scores_gemma":[0.000033325392,0.0004801753,0.00037806804,0.00018924984,0.00017002987,3.428095e-7,0.0005190093,0.00021091824,0.00005686389],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007809517,0.000087263565,0.00003707465,0.00063605024,0.0003721887,0.000024711466,0.00006912982,0.000015587808,0.102518536,0.000038604638,0.0013424327,0.89478034],"study_design_scores_gemma":[0.0005294677,0.00032272137,0.000033818942,0.0004928118,0.00010947253,0.000120919496,0.00000656539,5.9366453e-8,0.0010853338,0.000018596815,0.9967819,0.00049836806],"about_ca_topic_score_codex":0.000064189226,"about_ca_topic_score_gemma":0.00054377335,"teacher_disagreement_score":0.9954394,"about_ca_system_score_codex":0.000088162735,"about_ca_system_score_gemma":0.0002023614,"threshold_uncertainty_score":0.999765},"labels":[],"label_agreement":null},{"id":"W2069221265","doi":"10.1016/j.tim.2010.12.008","title":"The rise and fall of the Mycobacterium tuberculosis genome","year":2011,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"","keywords":"Biology; Mycobacterium tuberculosis; Tuberculosis; Genome; Microbiology; Virology; Mycobacterium tuberculosis complex; Mycobacterium; Genetics; Computational biology; Gene; Bacteria","score_opus":0.03298129202340427,"score_gpt":0.294718547333376,"score_spread":0.2617372553099717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069221265","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98873115,0.0027838494,0.0000012826665,0.0038360145,0.00012776528,0.000112681184,0.000027859125,0.000009375009,0.004370027],"genre_scores_gemma":[0.9975728,0.0010703759,0.00014088463,0.00034994358,0.00003963073,0.000015843276,0.000008960518,0.000009809102,0.00079179043],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99869967,0.00034881578,0.00031368743,0.00021608923,0.000029629797,0.00039213052],"domain_scores_gemma":[0.99920833,0.00021827155,0.00007101203,0.00040162663,0.000037659174,0.000063112544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053611334,0.00011508519,0.0003139705,0.00011859475,0.00006643123,0.000002382848,0.00020386725,0.0001502767,0.0001775524],"category_scores_gemma":[0.00021938169,0.000056187328,0.00009485836,0.00021529419,0.0007270943,0.000017122433,0.00018540033,0.00029244917,0.000014902889],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004914581,0.00014215762,0.50998336,0.000034741293,0.00017494382,0.0000116766,0.000932456,3.941513e-7,0.46877775,0.0006991091,0.0035493798,0.015202609],"study_design_scores_gemma":[0.00053880975,0.00025658167,0.9556499,0.000017341874,0.00003346454,0.00020166194,0.00007460999,0.0000075050457,0.003031912,0.00014862066,0.03997094,0.0000686505],"about_ca_topic_score_codex":0.00053080445,"about_ca_topic_score_gemma":0.0008794438,"teacher_disagreement_score":0.46574584,"about_ca_system_score_codex":0.000031829448,"about_ca_system_score_gemma":0.000024865878,"threshold_uncertainty_score":0.2679009},"labels":[],"label_agreement":null},{"id":"W2070425328","doi":"10.1016/j.tim.2014.12.010","title":"Innovative techniques, sensors, and approaches for imaging biofilms at different scales","year":2015,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Photoacoustic and Ultrasonic Imaging","field":"Engineering","cited_by":116,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Microscale chemistry; Confocal laser scanning microscopy; Microscopy; Confocal; Mesoscale meteorology; In situ; Remote sensing; Laser scanning; Nanotechnology; Microscope; Biology; Biological system; Laser; Materials science; Optics; Biophysics; Chemistry; Physics","score_opus":0.05507432275309036,"score_gpt":0.2995209727182367,"score_spread":0.2444466499651463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070425328","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00021862035,0.9968473,0.00051962305,0.000013210297,0.00022715714,0.00042413926,0.00069038576,0.00021768983,0.0008419147],"genre_scores_gemma":[0.0010225135,0.9930865,0.0028658167,0.000015981514,0.000120331635,0.00032020747,0.0020832254,0.00012532118,0.00036008918],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984464,0.00007458206,0.00050881715,0.0004462845,0.00002692877,0.0004969987],"domain_scores_gemma":[0.9994077,0.00017157757,0.00011134505,0.00023095256,0.000028682312,0.000049713955],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022176468,0.00053118146,0.0014395675,0.00059143576,0.000039415812,0.000016961127,0.0001943682,0.00032318424,0.00001293928],"category_scores_gemma":[0.000019719962,0.00042263512,0.0001162893,0.00035247515,0.000203412,0.000033140535,0.00012450841,0.00040097843,0.0000034034992],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000030598674,0.000019012257,0.000027026703,0.0024963932,0.0000611635,0.000005793316,0.00006426105,0.0000033387282,0.00066723145,0.00005056989,0.0038190014,0.9927831],"study_design_scores_gemma":[0.00027420465,0.000021118209,0.0000070192064,0.0014276674,0.00013294427,0.0005125733,0.000028329532,0.0004698064,0.00033315108,0.000027204012,0.99617875,0.0005872181],"about_ca_topic_score_codex":0.000003993832,"about_ca_topic_score_gemma":0.00000876333,"teacher_disagreement_score":0.99235976,"about_ca_system_score_codex":0.00038759082,"about_ca_system_score_gemma":0.000019987681,"threshold_uncertainty_score":0.99982256},"labels":[],"label_agreement":null},{"id":"W2070620318","doi":"10.1016/j.tim.2004.07.002","title":"Phylogenetic reconstruction and lateral gene transfer","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Phylogenetic tree; Tree of life (biology); Horizontal gene transfer; Genome; Phylogenetics; Evolutionary biology; Clade; Core (optical fiber); Gene; Genetics; Tree (set theory); Computational biology; Computer science","score_opus":0.02146499444623002,"score_gpt":0.27522956081951355,"score_spread":0.25376456637328354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070620318","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.028024368,0.9710212,0.00000896187,0.000012206091,0.0003994637,0.00017329167,0.00020068667,0.000003434312,0.00015641339],"genre_scores_gemma":[0.0041221925,0.99427366,0.00046386986,0.00003029154,0.00017769642,0.000051114028,0.00052241987,0.000045336343,0.00031339846],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99834925,0.00012665612,0.0004613264,0.00068501284,0.000018520142,0.00035925652],"domain_scores_gemma":[0.99955684,0.000010931073,0.00007450884,0.00029143118,0.00001875461,0.000047514888],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010346981,0.000420764,0.00089716853,0.00023782151,0.000048810005,0.000011596095,0.00018097938,0.00062517583,0.000029447092],"category_scores_gemma":[0.000004882344,0.00037033495,0.00022376985,0.00013791709,0.00022097929,3.8186812e-7,0.00011663574,0.00019197927,0.0000074962836],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012857095,0.000027367136,0.00008995484,0.00065036124,0.00019006079,0.0000063810703,0.000030515212,0.0000042344386,0.049454637,0.000014315608,0.00003808172,0.94948125],"study_design_scores_gemma":[0.000727752,0.00029690537,0.0002068913,0.0006405731,0.00024028307,0.0014264232,0.0000055962714,2.0571419e-7,0.0012750992,0.000057451136,0.994498,0.0006247914],"about_ca_topic_score_codex":0.00001802607,"about_ca_topic_score_gemma":0.00010778161,"teacher_disagreement_score":0.9944599,"about_ca_system_score_codex":0.00003703482,"about_ca_system_score_gemma":0.00007915806,"threshold_uncertainty_score":0.99987483},"labels":[],"label_agreement":null},{"id":"W2070622846","doi":"10.1016/s0966-842x(03)00079-9","title":"Campylobacter – a tale of two protein glycosylation systems","year":2003,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":189,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Campylobacter jejuni; Biology; Glycosylation; Campylobacter; Glycoprotein; Bacteria; Microbiology; Glycan; N-linked glycosylation; Gene; Biochemistry; Genetics","score_opus":0.06028447292919294,"score_gpt":0.3182139479066157,"score_spread":0.2579294749774228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070622846","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02430367,0.973277,0.000001312713,0.000018944054,0.0004545639,0.00053064886,0.0003944425,0.000032956734,0.0009864914],"genre_scores_gemma":[0.0033104804,0.99092346,0.0000899932,0.000040705894,0.00028457222,0.00022846593,0.0031991077,0.0000068919494,0.0019162891],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961707,0.001385309,0.0011849761,0.0006696519,0.000047192534,0.0005421499],"domain_scores_gemma":[0.99863833,0.0003193639,0.00076469406,0.00017130913,0.000045060046,0.00006126356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060259725,0.00046412015,0.0022313322,0.00013605098,0.000040434017,0.000013317747,0.00045002645,0.00078576227,0.00063100696],"category_scores_gemma":[0.000036524878,0.00017789107,0.00045331317,0.00081517204,0.00015379883,0.000039388415,0.000090040325,0.000379618,0.0000860856],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001185588,0.00010254285,0.00032358794,0.00069282704,0.00006392921,0.000010516998,0.000012053065,0.0000012095842,0.010898309,0.00033579866,0.0003506451,0.98719674],"study_design_scores_gemma":[0.00016983674,0.00017271153,0.00015180599,0.0012314351,0.00008498602,0.00018678424,0.000007819869,7.6647416e-7,0.000019615072,0.00006605394,0.9975495,0.00035872534],"about_ca_topic_score_codex":0.00048129086,"about_ca_topic_score_gemma":0.00058462244,"teacher_disagreement_score":0.9971988,"about_ca_system_score_codex":0.000102880746,"about_ca_system_score_gemma":0.000024607863,"threshold_uncertainty_score":0.72541875},"labels":[],"label_agreement":null},{"id":"W2074020751","doi":"10.1016/j.tim.2008.11.006","title":"Type III secretion systems in symbiotic adaptation of pathogenic and non-pathogenic bacteria","year":2009,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Virulence; Adaptation (eye); Pathogenic bacteria; Bacteria; Secretion; Microbiology; Function (biology); Evolutionary biology; Genetics; Gene; Neuroscience","score_opus":0.014051567353324263,"score_gpt":0.2713808383513602,"score_spread":0.25732927099803593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074020751","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99645215,0.0030525143,0.000045514524,0.000043686683,0.00010739727,0.000121756646,0.000019834937,0.0000041025082,0.000153068],"genre_scores_gemma":[0.99859995,0.00066909683,0.00025803995,0.000027367329,0.000037487906,0.000008603242,0.00024327295,0.00000787128,0.00014830958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990005,0.00015794214,0.0002781132,0.0002916113,0.00002880019,0.00024305105],"domain_scores_gemma":[0.99964535,0.0000149350635,0.00008242775,0.0001761376,0.000053878324,0.000027274618],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026802477,0.00012659261,0.00024148152,0.0001823951,0.00002005525,0.0000056821973,0.00010197844,0.0001905839,0.000008510545],"category_scores_gemma":[0.000045822908,0.00012208277,0.000033195425,0.00025943952,0.000086080436,0.0000036025037,0.000064259955,0.00010142775,0.000001605797],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016583061,0.000053343476,0.004834111,0.000018289727,0.000015981002,0.0000043075656,0.00014348587,0.00006988416,0.99114096,0.000028082852,0.000047763624,0.0034779746],"study_design_scores_gemma":[0.00706277,0.006391788,0.87069434,0.00024259325,0.00006133695,0.00019830381,0.0011654604,0.0026683698,0.10768659,0.000095941585,0.0027590923,0.00097344536],"about_ca_topic_score_codex":0.000083776875,"about_ca_topic_score_gemma":0.00040795904,"teacher_disagreement_score":0.8834544,"about_ca_system_score_codex":0.000026037682,"about_ca_system_score_gemma":0.000038829618,"threshold_uncertainty_score":0.4978391},"labels":[],"label_agreement":null},{"id":"W2074527480","doi":"10.1016/j.tim.2015.01.009","title":"Does chronic infection in retroviruses have a sense?","year":2015,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Biology; Gene; Genome; Sense (electronics); Function (biology); Virology; Gene expression; Murine leukemia virus; Genetics; Virus; Computational biology","score_opus":0.046622156218565185,"score_gpt":0.3318869475635892,"score_spread":0.285264791345024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074527480","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009678076,0.9927935,9.023412e-7,0.00003588147,0.0034192714,0.00037108414,0.00031444393,0.00010212069,0.0019949975],"genre_scores_gemma":[0.0009880372,0.9834869,0.000011617793,0.000038620037,0.00019376935,0.0001420859,0.0014111772,0.000067780304,0.01366002],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9954957,0.0012507865,0.0011889435,0.0010135594,0.000022094953,0.0010289318],"domain_scores_gemma":[0.9986212,0.00024352528,0.000492174,0.0005613377,0.000052508218,0.000029214627],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00057597994,0.0008403811,0.0031882597,0.0017729282,0.000104354076,0.00001320734,0.00031956678,0.0021787328,0.00063268736],"category_scores_gemma":[0.00007408434,0.0004885631,0.00049885083,0.00071158377,0.0006870578,0.000057977646,0.0003953409,0.0017464166,0.0011809635],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000667121,0.0002622008,0.002049554,0.0020606185,0.0005162086,0.000109535285,0.00034066557,0.000001539358,0.002201262,0.00005880499,0.012925989,0.9794069],"study_design_scores_gemma":[0.0011802965,0.00029237277,0.0001225195,0.0019024628,0.00024143026,0.00039648853,0.00002665077,5.9259452e-8,0.00011341674,0.00003271185,0.9950656,0.00062597956],"about_ca_topic_score_codex":0.0015977481,"about_ca_topic_score_gemma":0.018575296,"teacher_disagreement_score":0.98213965,"about_ca_system_score_codex":0.0010173016,"about_ca_system_score_gemma":0.00030394737,"threshold_uncertainty_score":0.9997566},"labels":[],"label_agreement":null},{"id":"W2075955820","doi":"10.1016/j.tim.2006.09.004","title":"Effector-triggered immunity by the plant pathogen Phytophthora","year":2006,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Phytophthora infestans; Biology; Locus (genetics); Effector; Genetics; Gene; R gene; Pathogen; Blight; Plant disease resistance; Phytophthora; Botany; Cell biology","score_opus":0.03786506378140558,"score_gpt":0.2663299765665459,"score_spread":0.2284649127851403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075955820","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004781532,0.9760072,1.043094e-7,0.00004446069,0.00026789008,0.0002752574,0.01779051,0.00004077569,0.0007922583],"genre_scores_gemma":[0.00027811236,0.97198826,0.000010066618,0.000043913256,0.00023107255,0.00007712669,0.0253004,0.000003683235,0.0020673508],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99721617,0.0010377592,0.00057698286,0.0005385223,0.0000570294,0.000573544],"domain_scores_gemma":[0.9987448,0.0006811852,0.00033249237,0.00018195214,0.000014760441,0.000044800385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046917715,0.00048822665,0.0013441239,0.000049786748,0.0002008617,0.000035668814,0.00089081115,0.0006498336,0.00024650423],"category_scores_gemma":[0.000013967182,0.00013355934,0.00047187408,0.0006975555,0.00017140343,0.000020247346,0.00014965264,0.00062754884,0.00009070533],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010164573,0.00008192663,0.000017274875,0.00020039325,0.000031695807,0.000043495824,0.0000021829642,8.422596e-8,0.096447095,0.000008005158,0.02167156,0.8814861],"study_design_scores_gemma":[0.00007756386,0.00007051669,0.00048664262,0.00058680057,0.00008026607,0.0002697448,0.0000039037845,1.9730373e-7,0.000028252729,0.000005770292,0.99804556,0.0003447653],"about_ca_topic_score_codex":0.00024357482,"about_ca_topic_score_gemma":0.0014008279,"teacher_disagreement_score":0.97637403,"about_ca_system_score_codex":0.0000736214,"about_ca_system_score_gemma":0.000014391868,"threshold_uncertainty_score":0.54463917},"labels":[],"label_agreement":null},{"id":"W2076452367","doi":"10.1016/s0966-842x(01)02132-1","title":"Can bacterial interference prevent infection?","year":2001,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":311,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Commensalism; Microbiology; Biofilm; Immune system; Flora (microbiology); Host (biology); Bacteria; Virulence; Immunology; Ecology; Gene; Genetics","score_opus":0.02160284641964701,"score_gpt":0.24834991424802436,"score_spread":0.22674706782837734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076452367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615437,0.000029161118,0.000001487083,0.0012024876,0.00035250897,0.00004781587,0.000045332832,0.00003239791,0.0021344407],"genre_scores_gemma":[0.9985384,0.00006676516,0.00002035739,0.00013172145,0.00013171336,0.0000071314976,0.00026623966,5.822127e-7,0.0008371213],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992389,0.00007275398,0.00017887626,0.00023076382,0.000015473137,0.00026322948],"domain_scores_gemma":[0.99983484,0.00002484744,0.00004519982,0.000044606655,0.000013894384,0.00003660398],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000093254755,0.00010658731,0.0001389746,0.00003378353,0.000048560596,0.000016367643,0.00014650983,0.000119984914,0.0022384631],"category_scores_gemma":[0.000006624061,0.00004342093,0.000050110877,0.00029604172,0.000055150944,0.000026322554,0.000080039674,0.00012353006,0.00002959536],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004018813,0.00015058125,0.020285705,8.0496136e-7,0.000008092973,0.000005763123,0.000039657465,0.0000013835828,0.8730315,0.0001545791,0.0005107206,0.10577101],"study_design_scores_gemma":[0.0008752941,0.0017942062,0.74139154,0.000051721945,0.000018394285,0.0002979335,0.000053767395,0.000026591599,0.026731297,0.0013388834,0.22675237,0.00066798046],"about_ca_topic_score_codex":0.00041385842,"about_ca_topic_score_gemma":0.009994938,"teacher_disagreement_score":0.8463002,"about_ca_system_score_codex":0.000038407612,"about_ca_system_score_gemma":0.000003433692,"threshold_uncertainty_score":0.9986736},"labels":[],"label_agreement":null},{"id":"W2077787787","doi":"10.1016/j.tim.2013.08.001","title":"How do filovirus filaments bend without breaking?","year":2013,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Nucleoprotein; Ebola virus; Virology; Genome; RNA; VP40; Mononegavirales; Ebolavirus; Genetics; Transcription (linguistics); Virus; Computational biology; Gene; Paramyxoviridae; Viral disease","score_opus":0.09742255619131923,"score_gpt":0.41852741020669576,"score_spread":0.32110485401537653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077787787","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019382985,0.9916886,0.0000057697634,0.00015642657,0.0003880149,0.0006040958,0.00022923695,0.00005524138,0.0066787675],"genre_scores_gemma":[0.00032417578,0.9530386,0.00027831778,0.00008442616,0.0002796582,0.00020803383,0.0013499074,0.00007711245,0.0443598],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99766475,0.0002835466,0.0005516677,0.00070153916,0.00008189232,0.000716607],"domain_scores_gemma":[0.9989126,0.00008740182,0.00023276519,0.0005635328,0.00006715959,0.00013655412],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021921945,0.000528675,0.0022212104,0.0013787232,0.00006620241,0.000078514764,0.00026128392,0.0008592222,0.0032515405],"category_scores_gemma":[0.000042154163,0.00036882368,0.0005120394,0.0007567358,0.0002276446,0.00006495729,0.00021669437,0.0011758825,0.00074282935],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012394704,0.00013166625,0.00013338203,0.001748091,0.00020753006,0.00006192697,0.0000153685,3.834368e-8,0.00038966193,0.000024841323,0.0129479095,0.9843272],"study_design_scores_gemma":[0.00068615435,0.00028697634,0.000045595203,0.0030652373,0.00028642363,0.0012565878,0.000008977397,0.0000010926935,0.000023131106,0.0000058512205,0.9940251,0.00030886728],"about_ca_topic_score_codex":0.0002075148,"about_ca_topic_score_gemma":0.00008958641,"teacher_disagreement_score":0.9840183,"about_ca_system_score_codex":0.00031718347,"about_ca_system_score_gemma":0.00014616008,"threshold_uncertainty_score":0.9998764},"labels":[],"label_agreement":null},{"id":"W2078785469","doi":"10.1016/j.tim.2014.02.006","title":"Ordering microbial diversity into ecologically and genetically cohesive units","year":2014,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":210,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of Environmental Health Sciences; Scheme for Promotion of Academic and Research Collaboration; Canada Research Chairs; Natural Sciences and Engineering Research Council of Canada; Broad Institute; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Biology; Gene flow; Selection (genetic algorithm); Evolutionary biology; Genetic diversity; Genome; Genomics; Gene; Ecological genetics; Ecology; Natural selection; Genetics; Genetic variation; Population","score_opus":0.022498912193314895,"score_gpt":0.2919987459539954,"score_spread":0.2694998337606805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078785469","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00423166,0.9939855,0.00042227394,0.000042240732,0.00030310132,0.00025446873,0.00011906092,0.000021015956,0.00062069145],"genre_scores_gemma":[0.0017324137,0.99340665,0.0015533223,0.00023441945,0.00015460241,0.000019190915,0.0019727387,0.00003949369,0.00088716845],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99776715,0.000406933,0.0005137352,0.00082426844,0.000034427907,0.00045347976],"domain_scores_gemma":[0.9991689,0.0000507522,0.00021194121,0.00038350484,0.00007942647,0.000105516825],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002607395,0.00046464775,0.0010787394,0.00025897575,0.00014362711,0.000016714452,0.00047625066,0.0011205312,0.00007487064],"category_scores_gemma":[0.00009894494,0.00042157844,0.00017782045,0.00028623463,0.0004137226,0.0000014011325,0.0015453128,0.00034880836,0.000027115086],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050419992,0.000105551,0.00032848355,0.0014103878,0.00025457723,0.000023234948,0.00007317028,0.00003926013,0.008658145,0.00021278365,0.0034170235,0.98542696],"study_design_scores_gemma":[0.000480273,0.00033448564,0.00012530762,0.00020392182,0.0001518178,0.00019434874,0.000007961288,0.000010726679,0.000025586416,0.000036616053,0.99791044,0.0005185444],"about_ca_topic_score_codex":0.000024897832,"about_ca_topic_score_gemma":0.0008825218,"teacher_disagreement_score":0.99449337,"about_ca_system_score_codex":0.000059409973,"about_ca_system_score_gemma":0.00010856192,"threshold_uncertainty_score":0.99982363},"labels":[],"label_agreement":null},{"id":"W2079107912","doi":"10.1016/j.tim.2013.08.006","title":"Pathogen recognition receptor crosstalk in respiratory syncytial virus sensing: a host and cell type perspective","year":2013,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; University of British Columbia; Université de Montréal; Child and Family Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Biology; Pattern recognition receptor; Innate immune system; Crosstalk; Immunology; Immune system; Virus; Pathogen; Virology; Receptor; Pathogenesis; Respiratory tract infections; Respiratory system; Genetics","score_opus":0.048630347234479177,"score_gpt":0.34596932934225855,"score_spread":0.29733898210777937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079107912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933637,0.00070324907,0.0000032526946,0.0002268113,0.0001576952,0.00033012455,0.000045461205,0.000036048386,0.005133705],"genre_scores_gemma":[0.99805593,0.00007342607,0.00036914114,0.00048314437,0.00012212238,0.000025737168,0.00007473576,0.000030692718,0.00076507404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984177,0.00033446436,0.0003306614,0.0004649883,0.00005182934,0.00040038294],"domain_scores_gemma":[0.9993152,0.000084131054,0.0000645152,0.00022821524,0.0002173687,0.00009054374],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003159158,0.00017922086,0.00033874324,0.0008859889,0.000057481266,0.000026457566,0.00005776557,0.00029657932,0.0013287994],"category_scores_gemma":[0.00018358392,0.00016635479,0.00004481155,0.00071890524,0.00031286493,0.00010761188,0.00007765062,0.0005261493,0.00053399976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018752321,0.00015297654,0.010830997,0.000016785154,0.000012817581,0.0000478226,0.0004188249,5.770744e-7,0.97348374,0.000007544991,0.0015274117,0.013312992],"study_design_scores_gemma":[0.014111227,0.0071848044,0.38771823,0.0003088041,0.00007317053,0.0004989247,0.0029690801,0.00011052133,0.53306293,0.0004869167,0.052173316,0.0013020338],"about_ca_topic_score_codex":0.0010652158,"about_ca_topic_score_gemma":0.0008229089,"teacher_disagreement_score":0.44042078,"about_ca_system_score_codex":0.0003939366,"about_ca_system_score_gemma":0.00010785664,"threshold_uncertainty_score":0.99958414},"labels":[],"label_agreement":null},{"id":"W2081907677","doi":"10.1016/j.tim.2010.11.007","title":"Untangling metabolic and communication networks: interactions of enterics with phytobacteria and their implications in produce safety","year":2010,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":83,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Salmonella enterica; Phyllosphere; Salmonella; Pathogenic bacteria; Human pathogen; Microbiology; Bacteria; Colonization","score_opus":0.03269382018612796,"score_gpt":0.285167826164149,"score_spread":0.25247400597802105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081907677","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17885804,0.8197966,0.0000037363618,0.00018231948,0.00010920899,0.0002731994,0.0006193049,0.000015883157,0.00014166888],"genre_scores_gemma":[0.046856552,0.95110565,0.00014942307,0.00001754339,0.00003293609,0.000045948746,0.0017460162,0.0000025622196,0.000043394455],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987385,0.00029599658,0.00048609814,0.00028559534,0.000008661698,0.00018514552],"domain_scores_gemma":[0.9990343,0.000394815,0.00033969508,0.00016883758,0.00003695678,0.000025387242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002184681,0.00022945587,0.00076634635,0.00011752258,0.00009399464,0.000023753546,0.00025145753,0.00019986072,0.00004876886],"category_scores_gemma":[0.000016112655,0.00009137144,0.00006338632,0.0005186222,0.00017342356,0.00009172196,0.00016012878,0.0006418152,7.763895e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017527427,0.00009342465,0.0006174938,0.000056881436,0.000028075554,1.9474977e-7,0.00007840901,5.538973e-7,0.021432009,0.000047966398,0.000015446562,0.977612],"study_design_scores_gemma":[0.00010984357,0.000060474933,0.014038446,0.0012063152,0.000051647236,0.0003500401,0.00008866328,0.000004581039,0.00005282512,0.000011559966,0.9838258,0.00019978838],"about_ca_topic_score_codex":0.00032277164,"about_ca_topic_score_gemma":0.015423987,"teacher_disagreement_score":0.98381037,"about_ca_system_score_codex":0.000027098571,"about_ca_system_score_gemma":0.00001072878,"threshold_uncertainty_score":0.86069465},"labels":[],"label_agreement":null},{"id":"W2082960534","doi":"10.1016/j.tim.2012.08.012","title":"On the fitness of microbial taxonomy","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Patient Safety Institute","keywords":"Biology; Taxonomy (biology); Evolutionary biology; Ecology; Computational biology","score_opus":0.01804189969831265,"score_gpt":0.25410657569119943,"score_spread":0.23606467599288677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082960534","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99470764,0.00033663923,0.00033573198,0.00023954139,0.00026225724,0.00007296496,0.00004626698,0.0000036743243,0.0039952686],"genre_scores_gemma":[0.9976366,0.000019170679,0.00032044243,0.00041450065,0.00008816076,0.000016092574,0.00018249059,0.000008312988,0.0013142283],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.999329,0.00010007395,0.00016960515,0.0001432284,0.000015786087,0.00024231299],"domain_scores_gemma":[0.99961513,0.0000224913,0.000063369065,0.00025588405,0.000018149345,0.000024986812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019044506,0.00009975592,0.00011380292,0.000068499015,0.000024650475,0.0000018277264,0.00017884429,0.0001415983,0.00020673506],"category_scores_gemma":[0.000025788027,0.00007278589,0.00006368425,0.00010258063,0.00016884947,9.72258e-7,0.00007388914,0.00008374633,0.000020752876],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005944645,0.00012546917,0.006330642,0.0000031151783,0.00002088833,1.888945e-7,0.000040472267,0.00010744334,0.97231287,0.0025573268,0.016529378,0.0019127803],"study_design_scores_gemma":[0.0021124224,0.000653689,0.04074449,0.000024019922,0.000029592098,0.000116929274,0.00017558919,0.00007295731,0.44333094,0.00017864315,0.5119632,0.0005974964],"about_ca_topic_score_codex":0.00000919888,"about_ca_topic_score_gemma":0.00007417984,"teacher_disagreement_score":0.5289819,"about_ca_system_score_codex":0.000010284668,"about_ca_system_score_gemma":0.00001472796,"threshold_uncertainty_score":0.29681227},"labels":[],"label_agreement":null},{"id":"W2083357432","doi":"10.1016/j.tim.2014.11.001","title":"Why doesn’t Mycobacterium tuberculosis spread in animals?","year":2014,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Mycobacterium bovis; Mycobacterium tuberculosis; Biology; Virulence; Tuberculosis; Scopus; Mycobacterium tuberculosis complex; Tubercle; Genome; Genetics; Gene; Microbiology; Medicine; Bacilli; Bacteria; MEDLINE","score_opus":0.031133679276618118,"score_gpt":0.32136145405147354,"score_spread":0.2902277747748554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083357432","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05261997,0.001437921,0.00000536116,0.93842965,0.00064397726,0.0003679336,0.00020698093,0.00009033373,0.006197859],"genre_scores_gemma":[0.018092709,0.0007493397,0.00042075515,0.9701827,0.0028496278,0.00016259158,0.005008181,0.00013482374,0.0023992623],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99379385,0.0014660595,0.0012072577,0.0014017981,0.0001268552,0.002004187],"domain_scores_gemma":[0.9975779,0.00087503396,0.00023075561,0.0010702951,0.00008135102,0.00016467726],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0009567471,0.00075579196,0.0024025256,0.002469818,0.000036711856,0.000018044948,0.0005232091,0.0033771067,0.002968195],"category_scores_gemma":[0.00052477495,0.0006239942,0.0004257647,0.00073828036,0.00049064413,0.000047409052,0.0002619365,0.0049544773,0.0004784549],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026872513,0.000100923564,0.023437006,0.00026088287,0.00015508392,0.0014043427,0.000056905,0.0000015622057,0.030220099,0.000011085211,0.94131845,0.0027649472],"study_design_scores_gemma":[0.0015935886,0.0006905298,0.026609428,0.00034586593,0.000081700084,0.0012412749,0.000011245312,0.0000149741545,0.0003656172,0.000078026875,0.96843076,0.0005369644],"about_ca_topic_score_codex":0.002158538,"about_ca_topic_score_gemma":0.0021757819,"teacher_disagreement_score":0.03452726,"about_ca_system_score_codex":0.00052928267,"about_ca_system_score_gemma":0.000098644334,"threshold_uncertainty_score":0.99962115},"labels":[],"label_agreement":null},{"id":"W2083395427","doi":"10.1016/s0966-842x(00)01940-5","title":"Virulence Mechanisms of Bacterial Pathogens (3rd edn)","year":2001,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Robert Koch Institut","keywords":"Virulence; Biology; Microbiology; Genetics; Gene","score_opus":0.021188830146883126,"score_gpt":0.22218910198968486,"score_spread":0.20100027184280173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083395427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977341,0.00009408242,0.000005282194,0.00028678976,0.00037820346,0.000054575386,0.0005701086,0.00003124393,0.0008455905],"genre_scores_gemma":[0.99858546,0.00013535006,0.00039244906,0.00008991349,0.00010826232,0.000009548491,0.00040443768,9.4876174e-7,0.00027361908],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988632,0.00012628132,0.00031113232,0.0003111601,0.000034608252,0.00035361352],"domain_scores_gemma":[0.9996495,0.000106852356,0.0001170078,0.000067311914,0.000025548965,0.00003374888],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001907361,0.00015647187,0.00032392243,0.000039797444,0.00005037043,0.0000063169123,0.00028084076,0.0001577951,0.0020162894],"category_scores_gemma":[0.000022400945,0.0000656081,0.00008373526,0.00036086922,0.00010640654,0.00004419368,0.00013239276,0.000091070055,0.000041429485],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076750555,0.000064103086,0.0016707974,0.000001348136,0.000010035535,0.000018652941,0.000043948407,2.3679243e-7,0.96191436,0.00021771036,0.0002439622,0.035738066],"study_design_scores_gemma":[0.0013750538,0.0013968571,0.55873036,0.00007489423,0.000052907526,0.00082168134,0.00041013054,0.0000091257325,0.33728328,0.002183772,0.09665177,0.0010101695],"about_ca_topic_score_codex":0.00006509832,"about_ca_topic_score_gemma":0.001881116,"teacher_disagreement_score":0.6246311,"about_ca_system_score_codex":0.000020310348,"about_ca_system_score_gemma":0.0000040605737,"threshold_uncertainty_score":0.998896},"labels":[],"label_agreement":null},{"id":"W2084949910","doi":"10.1016/j.tim.2012.12.001","title":"Development of intestinal microbiota in infants and its impact on health","year":2013,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":531,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Gut flora; Microbiology; Immunology","score_opus":0.04850853412766679,"score_gpt":0.39713321124310486,"score_spread":0.34862467711543804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084949910","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.067737594,0.9313477,0.0000012234502,0.000033783304,0.00012832096,0.00046603606,0.00018927199,0.0000055440596,0.0000904902],"genre_scores_gemma":[0.0026193631,0.99335456,0.0014427048,0.00012016961,0.00005139876,0.000046438407,0.0020652614,0.000052394196,0.00024773175],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99703944,0.00031719962,0.0012100663,0.0007407774,0.000028166767,0.00066437287],"domain_scores_gemma":[0.9989307,0.000040659386,0.0005429787,0.0003422376,0.00003411031,0.000109305474],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004418493,0.0005621047,0.001715887,0.0007948604,0.000038086127,0.000008247953,0.0003329932,0.00066645537,0.00007929331],"category_scores_gemma":[0.000029678278,0.00043971566,0.00017976227,0.00034666422,0.00009944074,0.0000026030332,0.0002597584,0.00048440293,0.00003251829],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054281863,0.000204687,0.000102950355,0.0029874085,0.00008163058,0.000004244573,0.00015180132,7.614488e-7,0.09861922,0.00001036257,0.0021082568,0.8956744],"study_design_scores_gemma":[0.0009933606,0.00078995404,0.0015116862,0.00637011,0.000025534991,0.0004075757,0.000017857727,6.24107e-7,0.0014824063,0.0000018728947,0.98774666,0.00065237324],"about_ca_topic_score_codex":0.00008262764,"about_ca_topic_score_gemma":0.0006251066,"teacher_disagreement_score":0.9856384,"about_ca_system_score_codex":0.00019386862,"about_ca_system_score_gemma":0.0008065259,"threshold_uncertainty_score":0.99980545},"labels":[],"label_agreement":null},{"id":"W2085991602","doi":"10.1016/j.tim.2013.06.005","title":"Illuminating the roles of the Borrelia burgdorferi adhesins","year":2013,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Borrelia burgdorferi; Bacterial adhesin; Lyme disease; Biology; Microbiology; Borrelia; Enzootic; Virology; Immunology; Virulence; Antibody; Gene; Genetics","score_opus":0.027281127720590048,"score_gpt":0.29843560004983644,"score_spread":0.2711544723292464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085991602","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017513459,0.9942243,0.0000010443437,0.00009299599,0.0017748055,0.000557182,0.00041465962,0.00005761587,0.0011260321],"genre_scores_gemma":[0.0063949036,0.9879623,0.000012508925,0.00011430701,0.00009461945,0.00027269238,0.00059547654,0.00008251398,0.004470652],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957397,0.0018079599,0.0011255253,0.00061454385,0.000023958035,0.0006883428],"domain_scores_gemma":[0.99702287,0.00078607065,0.0009547265,0.0011383899,0.00007976559,0.000018200431],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00037922984,0.0006475886,0.0019056599,0.0004293567,0.00020881313,0.000014485583,0.00149811,0.0011161411,0.0016252513],"category_scores_gemma":[0.0002289477,0.00033387457,0.00093193393,0.0007974479,0.0014074936,0.00004029727,0.00057358464,0.0012230411,0.0005451638],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009088519,0.00020085624,0.00017519927,0.00080449553,0.00058121857,0.0000033166837,0.00026960942,0.0000014955921,0.005836127,0.00038752076,0.015759852,0.9759712],"study_design_scores_gemma":[0.00034317293,0.000087710134,0.00021419657,0.0016528227,0.0006004951,0.00044620375,0.00008470287,1.4665655e-7,0.0006048656,0.000023898088,0.99558103,0.00036074573],"about_ca_topic_score_codex":0.00025471317,"about_ca_topic_score_gemma":0.0007585192,"teacher_disagreement_score":0.9798212,"about_ca_system_score_codex":0.00015415474,"about_ca_system_score_gemma":0.00022224248,"threshold_uncertainty_score":0.9999113},"labels":[],"label_agreement":null},{"id":"W2086782456","doi":"10.1016/s0966-842x(00)01912-0","title":"A centuries-long epidemic of scrapie in British sheep?","year":2001,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Rural Affairs; Wellcome Trust","keywords":"Scrapie; Biology; Flock; Outbreak; Population; Virology; Allele; Locus (genetics); Disease; Genetics; Demography; Gene; Ecology; Medicine; Prion protein; Pathology","score_opus":0.010469267826773005,"score_gpt":0.2676366928828092,"score_spread":0.25716742505603624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086782456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9825841,0.01662043,0.00005988634,0.00013814712,0.00009655451,0.0000748554,0.00004203398,0.0000063417297,0.000377657],"genre_scores_gemma":[0.99509615,0.0038550643,0.00027362845,0.00020460486,0.00005688851,0.000013984253,0.00027224154,0.000013289248,0.00021414389],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988488,0.00011869381,0.00034390468,0.00033268306,0.000022960363,0.00033294377],"domain_scores_gemma":[0.99961036,0.000014878492,0.00008532758,0.00022650862,0.000020432322,0.00004250198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022228646,0.00011592039,0.00023541399,0.0001569884,0.000018588877,0.00000592987,0.00021399403,0.00020776423,0.00027893193],"category_scores_gemma":[0.000059862818,0.00014202112,0.00009500487,0.0002483181,0.00011497164,0.000003217479,0.00011797378,0.00011389857,0.0000043495475],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012190833,0.000112803544,0.21153037,0.000012772408,0.00002644845,0.000058304446,0.000026608943,0.000060364015,0.64139104,0.000021081967,0.00092693476,0.14571138],"study_design_scores_gemma":[0.0071280883,0.0007887045,0.7210702,0.0003283832,0.000043927892,0.000880788,0.00020291907,0.000065850305,0.14968973,0.0006650705,0.11792051,0.0012158634],"about_ca_topic_score_codex":0.0004207265,"about_ca_topic_score_gemma":0.004604528,"teacher_disagreement_score":0.5095398,"about_ca_system_score_codex":0.000020625883,"about_ca_system_score_gemma":0.000029810606,"threshold_uncertainty_score":0.5791453},"labels":[],"label_agreement":null},{"id":"W2090291762","doi":"10.1016/s0966-842x(00)01818-7","title":"Crowd control: quorum sensing in pathogenic E. coli","year":2000,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Quorum sensing; Biology; Microbiology; Biofilm; Computational biology; Bacteria; Genetics","score_opus":0.010324099554803902,"score_gpt":0.27471696528862316,"score_spread":0.26439286573381926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090291762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99331737,0.0016196521,0.000015163056,0.0005193326,0.00007441435,0.000106576284,0.00004241273,0.000012049049,0.0042930306],"genre_scores_gemma":[0.9956848,0.00041254464,0.0003605579,0.0005748147,0.000085417625,0.000014341086,0.00011113254,0.000019865402,0.0027365244],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99838537,0.0002790752,0.00027642492,0.00043489854,0.000033707016,0.0005905443],"domain_scores_gemma":[0.99957824,0.000031374013,0.000036067435,0.0002818826,0.000028342214,0.00004410492],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030355746,0.00018118348,0.00028096305,0.00016348077,0.000046184632,0.00000924567,0.00018253228,0.00023140096,0.00023786035],"category_scores_gemma":[0.000055175748,0.0001765105,0.00007845665,0.0002867176,0.00020812063,0.0000023915452,0.00008856576,0.0002149325,0.00003651918],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024546086,0.000064996224,0.007829361,0.0000045414863,0.000031740907,0.00003933109,0.000054656644,0.000086482534,0.9648142,0.000011013479,0.0018782011,0.02494002],"study_design_scores_gemma":[0.018909717,0.0020041077,0.2572679,0.00010962248,0.000049399954,0.00043445188,0.00034541287,0.0007780105,0.12324778,0.000231631,0.5946297,0.001992249],"about_ca_topic_score_codex":0.000100279496,"about_ca_topic_score_gemma":0.002524926,"teacher_disagreement_score":0.84156644,"about_ca_system_score_codex":0.00004096962,"about_ca_system_score_gemma":0.00004695455,"threshold_uncertainty_score":0.7197889},"labels":[],"label_agreement":null},{"id":"W2090952227","doi":"10.1016/s0966-842x(02)02400-9","title":"Is quorum sensing a side effect of diffusion sensing?","year":2002,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":544,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Quorum sensing; Autoinducer; Secretion; Biology; Effector; Function (biology); Extracellular; Diffusion; Cell biology; Population; Bacteria; Microbiology; Biophysics; Biofilm; Biochemistry; Genetics; Physics","score_opus":0.01897051753463768,"score_gpt":0.2938558135255243,"score_spread":0.2748852959908866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090952227","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029639592,0.9683742,0.000005084537,0.00003544981,0.00076198066,0.00026049005,0.00020016395,0.000017488936,0.0007055856],"genre_scores_gemma":[0.0025182879,0.993804,0.0005318744,0.000096665266,0.00035945515,0.0000015206899,0.0015087266,0.000097581185,0.0010819336],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969673,0.00066323875,0.0008631735,0.00085713225,0.000046838104,0.0006022851],"domain_scores_gemma":[0.9986156,0.00008399821,0.0005172292,0.0006802413,0.000037907244,0.000064993554],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00031078662,0.0006677144,0.002069343,0.0004304318,0.000056007528,0.000015113398,0.00021468489,0.0013803191,0.000064570435],"category_scores_gemma":[0.00005570273,0.00053053274,0.00072024134,0.00034863956,0.00022756984,0.0000020994976,0.0003140294,0.00038271255,0.000028928436],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003165519,0.000017329872,0.0000052369937,0.0007973608,0.00008419487,0.00001841637,0.000015318925,1.0818891e-7,0.3716407,5.6847426e-7,0.0012501884,0.6261389],"study_design_scores_gemma":[0.00058548246,0.0005298249,0.0000037229079,0.0024032665,0.00028567354,0.00070222863,0.0000031290979,0.000004826328,0.03474335,6.156762e-7,0.9602025,0.00053539005],"about_ca_topic_score_codex":0.00006553744,"about_ca_topic_score_gemma":0.00008077126,"teacher_disagreement_score":0.9589523,"about_ca_system_score_codex":0.000046633337,"about_ca_system_score_gemma":0.00004324519,"threshold_uncertainty_score":0.9999161},"labels":[],"label_agreement":null},{"id":"W2091586024","doi":"10.1016/s0966-842x(00)01734-0","title":"The eukaryotic-like Ser/Thr protein kinases of Mycobacterium tuberculosis","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":377,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Kinase; Mycobacterium tuberculosis; Cell biology; Phosphatase; Bacteria; Genome; Genetics; Microbiology; Tuberculosis; Gene; Phosphorylation","score_opus":0.04743562510530257,"score_gpt":0.36515406442444187,"score_spread":0.3177184393191393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091586024","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014669658,0.9932113,4.2510462e-7,0.0010359965,0.0003105007,0.0009119774,0.00036862114,0.000043600212,0.0026505613],"genre_scores_gemma":[0.00037301215,0.9926903,0.00012462366,0.0001997499,0.00023116231,0.00032395878,0.0014178844,0.00007753954,0.004561731],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9946013,0.0016667518,0.00164547,0.00080346863,0.000103765684,0.0011792254],"domain_scores_gemma":[0.99709547,0.001105614,0.00041035254,0.0011264535,0.00008042705,0.00018171352],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009985397,0.00066041166,0.0036581769,0.0008413257,0.00009802201,0.000012235443,0.000616549,0.0010591436,0.0014667737],"category_scores_gemma":[0.0004316684,0.0003869201,0.00096167024,0.00094786973,0.0008095553,0.000035076853,0.00022494548,0.0013406996,0.00026107673],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021322921,0.00021499186,0.0003105953,0.004485944,0.00053288235,0.000087069675,0.000026105288,4.1940493e-7,0.00045264867,0.000059021113,0.014418311,0.97919875],"study_design_scores_gemma":[0.00045713983,0.00057708495,0.00055549253,0.0051450175,0.00039729744,0.00076337566,0.00001075274,0.0000011407726,0.000043647247,0.00001772478,0.991727,0.00030435546],"about_ca_topic_score_codex":0.00031308338,"about_ca_topic_score_gemma":0.0003489275,"teacher_disagreement_score":0.9788944,"about_ca_system_score_codex":0.00023468772,"about_ca_system_score_gemma":0.00033397795,"threshold_uncertainty_score":0.99985826},"labels":[],"label_agreement":null},{"id":"W2093029342","doi":"10.1016/s0966-842x(00)01875-8","title":"Why Helicobacter pylori has Lewis antigens","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Helicobacter pylori; Biology; Molecular mimicry; Antigen; Immune system; Autoantibody; Mimicry; Lipopolysaccharide; Microbiology; Immunology; Antibody; Genetics","score_opus":0.06367484404250069,"score_gpt":0.33038108974629293,"score_spread":0.26670624570379226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093029342","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00080737454,0.99262923,0.0000029302594,0.002007029,0.0010712176,0.00053906185,0.00040433143,0.0001790712,0.0023597581],"genre_scores_gemma":[0.000036589365,0.9891286,0.00021528266,0.002801485,0.0004953866,0.00013167567,0.0029357714,0.00015495306,0.0041002864],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99509096,0.00056486146,0.0015529147,0.0013139611,0.00008053832,0.0013967749],"domain_scores_gemma":[0.9981741,0.00014883146,0.00038716054,0.001025352,0.00007879841,0.00018579273],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00028541236,0.0011360188,0.004778772,0.0018692575,0.000113989096,0.000025094336,0.000468268,0.0017406067,0.0022774746],"category_scores_gemma":[0.00004648661,0.00090084394,0.0008937669,0.0011112294,0.00081718614,0.0000571412,0.00024906412,0.0020153504,0.0012493833],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112037764,0.0002972426,0.0013007077,0.0015538136,0.0017430831,0.00055658794,0.00018729968,1.6089083e-7,0.0000744582,0.0000033719537,0.085740656,0.9084306],"study_design_scores_gemma":[0.0013901716,0.0005145347,0.00030809597,0.0039495756,0.0015413747,0.0028293664,0.0000071650907,1.4262444e-7,0.000004907032,0.0000022054317,0.98896843,0.00048402327],"about_ca_topic_score_codex":0.00006919913,"about_ca_topic_score_gemma":0.00032215536,"teacher_disagreement_score":0.9079466,"about_ca_system_score_codex":0.00037718014,"about_ca_system_score_gemma":0.00017523508,"threshold_uncertainty_score":0.99955535},"labels":[],"label_agreement":null},{"id":"W2093427530","doi":"10.1016/s0966-842x(01)02098-4","title":"Divalent-metal transport by NRAMP proteins at the interface of host–pathogen interactions","year":2001,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Trace Elements in Health","field":"Nursing","cited_by":422,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"DMT1; Phagosome; Biology; Divalent; Intracellular; Extracellular; Cell biology; Divalent metal; Microbiology; Efflux; Pathogen; Biochemistry; Transporter; Metal; Chemistry; Gene","score_opus":0.05122398394064774,"score_gpt":0.40660234714506005,"score_spread":0.3553783632044123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093427530","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019364388,0.98987454,0.000028249919,0.0005301093,0.0023432304,0.0012213971,0.003433105,0.000061242376,0.00057170546],"genre_scores_gemma":[0.0012875923,0.9880677,0.00030707067,0.00009984231,0.00014681893,0.0003390503,0.003112191,0.00014147424,0.0064982846],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99579024,0.00096842926,0.0016160541,0.0007805719,0.00009386748,0.0007508267],"domain_scores_gemma":[0.99777466,0.0003530495,0.0008938514,0.0008737881,0.000037857226,0.000066808316],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00057346997,0.00062553247,0.0018960593,0.00052874396,0.00013323066,0.000007759033,0.00087132934,0.00051898486,0.0019685547],"category_scores_gemma":[0.000034946108,0.00044741746,0.00058349624,0.00080142356,0.0004167916,0.00006462645,0.00016494415,0.0013109937,0.00012044943],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010288719,0.00043625812,0.0001962626,0.0023838093,0.00021489231,0.000010502034,0.0005323559,0.0000017415132,0.007306615,0.0000063158795,0.010457907,0.97835046],"study_design_scores_gemma":[0.00037935708,0.00027253485,0.000034483714,0.0025512944,0.0004012766,0.0003209248,0.000041353043,2.800617e-7,0.00052379083,0.0000027976164,0.9951294,0.00034250587],"about_ca_topic_score_codex":0.00026882236,"about_ca_topic_score_gemma":0.002583916,"teacher_disagreement_score":0.9846715,"about_ca_system_score_codex":0.0007680659,"about_ca_system_score_gemma":0.00006604593,"threshold_uncertainty_score":0.99979776},"labels":[],"label_agreement":null},{"id":"W2093745128","doi":"10.1016/j.tim.2013.09.003","title":"Epigenetics and the evolution of virulence","year":2013,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Epigenetics; Effector; Genetics; Reprogramming; Host adaptation; Gene silencing; Gene; Evolutionary biology; Computational biology; Virulence; Cell biology","score_opus":0.03851847544667857,"score_gpt":0.2826601467906482,"score_spread":0.24414167134396964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093745128","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008026392,0.99101084,5.394369e-7,0.000053811924,0.00013842528,0.0001428079,0.00021861569,0.0000062532695,0.00040231206],"genre_scores_gemma":[0.002832705,0.99632967,0.000027592627,0.000012197149,0.00003722512,0.000023467328,0.00021572754,7.4746316e-7,0.00052064896],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99884355,0.00039720794,0.00039120685,0.00018578907,0.00001583995,0.00016642711],"domain_scores_gemma":[0.9991569,0.00048197593,0.00024619492,0.00007699214,0.000023048171,0.000014901868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021564506,0.0001636641,0.0006793033,0.00004664193,0.000058648326,0.000011240009,0.00030818195,0.0002319268,0.00040311847],"category_scores_gemma":[0.000023986195,0.000044799086,0.00014597528,0.00028975055,0.00033106873,0.000024324134,0.00013212861,0.00028125482,0.000029175451],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000053101644,0.000022956934,0.000012802842,0.00008380185,0.000017184237,2.9093758e-7,0.000012453019,6.409759e-8,0.006899653,0.0001353717,0.000329377,0.99248075],"study_design_scores_gemma":[0.00009500295,0.0000562593,0.00028249752,0.00057108625,0.00005622934,0.00010967978,0.000038066566,0.0000013831232,0.000024244498,0.00006875135,0.9985792,0.000117606054],"about_ca_topic_score_codex":0.0016204262,"about_ca_topic_score_gemma":0.0010594659,"teacher_disagreement_score":0.9982498,"about_ca_system_score_codex":0.000045550583,"about_ca_system_score_gemma":0.00000943016,"threshold_uncertainty_score":0.44138646},"labels":[],"label_agreement":null},{"id":"W2094942248","doi":"10.1016/j.tim.2007.01.001","title":"Intracellular Leishmania: your iron or mine?","year":2007,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Leishmania; Virulence; Virulence factor; Siderophore; Ferrous; Microbiology; Cell biology; Pathogen; Amastigote; Protozoa; Intracellular parasite; Macrophage; Intracellular; Biochemistry; In vitro; Parasite hosting; Gene; Chemistry","score_opus":0.048263340026161526,"score_gpt":0.34952910345225596,"score_spread":0.30126576342609446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094942248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9823707,0.001396689,0.00006019373,0.002757538,0.00024357032,0.00018677139,0.000012766372,0.00007418121,0.01289763],"genre_scores_gemma":[0.97364694,0.00019694211,0.0018873147,0.0004496279,0.0002792724,0.000013634629,0.00010791515,0.000035396184,0.023382958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980743,0.0000809246,0.00046763197,0.00045553935,0.00008999954,0.00083161396],"domain_scores_gemma":[0.99918085,0.00016530475,0.00007316866,0.00038529607,0.00007354824,0.00012180277],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00077893765,0.00023025024,0.0005386724,0.0007056278,0.000059450784,0.000008619065,0.00019510342,0.00024893842,0.0014605023],"category_scores_gemma":[0.00020656128,0.0001700514,0.00009783835,0.00060599,0.00030967526,0.000045354882,0.00015430033,0.000495751,0.00023633747],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014819149,0.0004915305,0.07942864,0.00007510752,0.00010890728,0.0021307585,0.00071217184,0.0000022437584,0.825551,0.00017419494,0.029721929,0.060121626],"study_design_scores_gemma":[0.009869507,0.0029779205,0.5101585,0.00016952012,0.00013286606,0.0034244515,0.0016614627,0.000025381189,0.12014755,0.00006742175,0.35057256,0.0007929038],"about_ca_topic_score_codex":0.00012642174,"about_ca_topic_score_gemma":0.0019297827,"teacher_disagreement_score":0.70540345,"about_ca_system_score_codex":0.00021408513,"about_ca_system_score_gemma":0.00004860539,"threshold_uncertainty_score":0.9994523},"labels":[],"label_agreement":null},{"id":"W2113147052","doi":"10.1016/j.tim.2011.07.008","title":"Non-indigenous microorganisms in the Antarctic: assessing the risks","year":2011,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":171,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Center for Northern Studies","funders":"Scientific Committee on Antarctic Research; Natural Environment Research Council; Sight Research UK","keywords":"Megafauna; Ecosystem; Biology; Disturbance (geology); Indigenous; Ecology; Contamination; Microorganism; Environmental protection; Environmental science; Pleistocene; Bacteria","score_opus":0.09243777101883936,"score_gpt":0.38874293385945424,"score_spread":0.29630516284061487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113147052","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008800085,0.9824666,0.0000054731145,0.00012256837,0.00031463028,0.00067964435,0.000051757048,0.00001522438,0.0075440155],"genre_scores_gemma":[0.0046348735,0.9940513,0.00012374904,0.0003267634,0.00006735502,0.00010691346,0.00016468088,0.00003947664,0.00048488838],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966538,0.0011556349,0.00052900513,0.00055481575,0.00005787134,0.0010488887],"domain_scores_gemma":[0.998735,0.00034104162,0.00021279787,0.0006597757,0.000002839798,0.000048523194],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0016417635,0.0003637912,0.0008641817,0.00024285328,0.0002109868,0.000046873585,0.0018648749,0.000492923,0.0031595584],"category_scores_gemma":[0.000035844554,0.00018735226,0.00020826013,0.00081104704,0.0007234309,0.00007565304,0.000567861,0.0014324228,0.0017082897],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000374879,0.00016153237,0.003618241,0.00013591441,0.000031365984,0.00011549997,0.0017398224,8.299188e-7,0.00031842687,0.000006440089,0.0020242892,0.9918439],"study_design_scores_gemma":[0.00016598671,0.00009197204,0.007746557,0.00016608417,0.000051650863,0.0007068345,0.00009077129,5.609296e-7,0.000010721268,0.00006691645,0.9906554,0.0002465217],"about_ca_topic_score_codex":0.0039993813,"about_ca_topic_score_gemma":0.010700884,"teacher_disagreement_score":0.99159735,"about_ca_system_score_codex":0.00042982784,"about_ca_system_score_gemma":0.00007913318,"threshold_uncertainty_score":0.999069},"labels":[],"label_agreement":null},{"id":"W2119123521","doi":"10.1016/s0966-842x(00)01703-0","title":"Horizontal gene transfer and the origin of species: lessons from bacteria","year":2000,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":567,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Horizontal gene transfer; Biology; Bacteria; Gene; Genetic algorithm; Genetics; Gene transfer; Pathogenicity island; Mechanism (biology); Evolutionary biology; Bacterial genetics; Genome; Escherichia coli","score_opus":0.035342423686712,"score_gpt":0.29645855176919567,"score_spread":0.2611161280824837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119123521","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.041518465,0.9557696,0.000004693082,0.000047057638,0.00020697499,0.00016605871,0.001820044,0.0000013993283,0.00046568035],"genre_scores_gemma":[0.005087066,0.9927762,0.00017403797,0.000028237971,0.00021925435,0.000037858794,0.0012085607,0.000029146797,0.0004396439],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984993,0.00025090168,0.000492227,0.0004876069,0.000020840595,0.00024913606],"domain_scores_gemma":[0.99941903,0.00006433296,0.00009229551,0.00038403852,0.000013608897,0.000026685799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014326618,0.0003479483,0.0012300302,0.00009621678,0.000038498965,0.000008232066,0.00032408308,0.00041443872,0.00014616002],"category_scores_gemma":[0.000005943647,0.00022513617,0.0003094739,0.00010438341,0.0005278895,2.971569e-7,0.000121717916,0.00016760947,0.0000041178037],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020676985,0.000066017245,0.000037379825,0.00028691711,0.0007996441,0.0000047897815,0.00022211156,7.702064e-7,0.14179978,0.00021154726,0.0006984334,0.85566586],"study_design_scores_gemma":[0.00086772075,0.00010116758,0.0000959734,0.00014422368,0.00024207815,0.000041717693,0.000012384301,1.00290244e-7,0.0011336309,0.000023541163,0.99710536,0.00023208249],"about_ca_topic_score_codex":0.000099942845,"about_ca_topic_score_gemma":0.00033054847,"teacher_disagreement_score":0.996407,"about_ca_system_score_codex":0.000013175121,"about_ca_system_score_gemma":0.000058406873,"threshold_uncertainty_score":0.91807866},"labels":[],"label_agreement":null},{"id":"W2131891835","doi":"10.1016/j.tim.2012.11.003","title":"Phage–bacteria infection networks","year":2012,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":356,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Rimouski","funders":"","keywords":"Biology; Genome; Computational biology; Evolutionary biology; Isolation (microbiology); Bacterial genome size; Bacteria; Dominance (genetics); Genetics; Ecology; Microbiology; Gene","score_opus":0.0404476157803673,"score_gpt":0.32534260864336184,"score_spread":0.2848949928629945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131891835","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00035508774,0.99146676,0.000044416178,0.000011180494,0.0025174539,0.00021090408,0.00007283775,0.00006279582,0.0052585606],"genre_scores_gemma":[0.00046478809,0.9934759,0.00015905855,0.000059505157,0.0002949884,0.000061571416,0.0010529613,0.000050424165,0.004380783],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99809086,0.00027549692,0.0005538434,0.00047680526,0.000019051655,0.0005839459],"domain_scores_gemma":[0.9992406,0.00005072167,0.00028670634,0.00034710078,0.000002888892,0.000072000075],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00018459903,0.00041843666,0.0009595056,0.00023058963,0.00006969193,0.000025303647,0.00025681587,0.00064625265,0.026863243],"category_scores_gemma":[0.0000040347113,0.00035422872,0.00034667787,0.0005271987,0.00016442031,0.00015458785,0.00032000942,0.0006662938,0.0026777715],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000027310061,0.00008726342,0.00004570767,0.000113799826,0.000030253985,0.0000049122077,0.000021282303,0.0000049699893,0.0015075953,0.0000027401322,0.0030511657,0.99512756],"study_design_scores_gemma":[0.00009368219,0.000027504737,0.00085587474,0.00032423815,0.0001836544,0.00035469304,5.4170346e-7,0.0000011945403,0.0000054702937,9.063636e-7,0.9978331,0.00031915042],"about_ca_topic_score_codex":0.00046903314,"about_ca_topic_score_gemma":0.001214821,"teacher_disagreement_score":0.99480844,"about_ca_system_score_codex":0.00044531637,"about_ca_system_score_gemma":0.00000809801,"threshold_uncertainty_score":0.999891},"labels":[],"label_agreement":null},{"id":"W2133923221","doi":"10.1016/j.tim.2008.08.004","title":"Subcellular alterations that lead to diarrhea during bacterial pathogenesis","year":2008,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Simon Fraser University","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Pathogenesis; Diarrhea; Microbiology; Lead (geology); Immunology; Pathology","score_opus":0.07770313428443175,"score_gpt":0.35411034718867324,"score_spread":0.2764072129042415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133923221","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08262183,0.9147288,0.0000027686779,0.00021278061,0.0005664815,0.0007320146,0.0006182117,0.000070005684,0.00044710288],"genre_scores_gemma":[0.0014506062,0.9889301,0.00013239909,0.000038676033,0.0008160547,0.0002356625,0.0039141863,0.00011266632,0.004369666],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99669755,0.0003540127,0.00088476576,0.0009881388,0.00013419679,0.00094137003],"domain_scores_gemma":[0.9985388,0.00015153117,0.00015821328,0.0008409283,0.000062648236,0.00024790154],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015580081,0.0006575284,0.002464587,0.0016813317,0.00013970365,0.000027786185,0.00036292095,0.00079199416,0.0011732477],"category_scores_gemma":[0.0000789069,0.0005627607,0.0007311157,0.0011059119,0.00014560952,0.000031191565,0.00027194183,0.0008001443,0.0006895224],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022857322,0.00047920516,0.00008493308,0.0036567403,0.00031186632,0.0017110422,0.00018545757,0.0000015930112,0.14868766,0.0000075467406,0.005323005,0.8393224],"study_design_scores_gemma":[0.0009508204,0.00023877926,0.0000596448,0.0022218903,0.00025547782,0.0027264042,0.000008975867,6.160092e-7,0.011103938,3.0177452e-7,0.9819078,0.0005253628],"about_ca_topic_score_codex":0.000063238425,"about_ca_topic_score_gemma":0.00011912738,"teacher_disagreement_score":0.9765848,"about_ca_system_score_codex":0.0005866073,"about_ca_system_score_gemma":0.00038466428,"threshold_uncertainty_score":0.9997398},"labels":[],"label_agreement":null},{"id":"W2139456334","doi":"10.1016/j.tim.2011.06.001","title":"Risk of Red Queen dynamics in pneumococcal vaccine strategy","year":2011,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Biology; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Pathogen; Evasion (ethics); Serotype; Host (biology); Evolutionary dynamics; Vaccination; Pneumococcal infections; Selection (genetic algorithm); Virology; Microbiology; Ecology; Genetics; Population; Immune system; Antibiotics","score_opus":0.022212978294489108,"score_gpt":0.2823202600761777,"score_spread":0.2601072817816886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139456334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98943186,0.0000367186,0.0000102203385,0.00021083519,0.0001226863,0.00008937057,0.000046804995,0.00002349329,0.01002804],"genre_scores_gemma":[0.99927014,0.00006124322,0.00007462666,0.000054301094,0.000022583386,0.000010173305,0.00007187534,0.000012142417,0.00042290014],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989705,0.00013866059,0.00040995708,0.00021546918,0.000018851177,0.00024655362],"domain_scores_gemma":[0.999542,0.000035577712,0.00011139855,0.00023602552,0.00003053957,0.000044482927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017092939,0.00012764758,0.00038769288,0.0005676579,0.000016265973,9.707117e-7,0.00008440428,0.00023083357,0.0004047522],"category_scores_gemma":[0.00003034692,0.00010490913,0.000077139644,0.00042981908,0.000079194186,0.000024132942,0.00003270725,0.00035689079,0.000014518098],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012164911,0.00034281012,0.727241,0.000014810658,0.00003690324,0.000048113787,0.00013616729,0.000011135105,0.26772484,0.0002658419,0.00007449734,0.003982284],"study_design_scores_gemma":[0.0019037455,0.00066920096,0.9917701,0.00003542911,0.00004358803,0.00013117683,0.00012249628,0.00008677372,0.0042367396,0.00017494328,0.00071469246,0.000111097324],"about_ca_topic_score_codex":0.00066333974,"about_ca_topic_score_gemma":0.004165233,"teacher_disagreement_score":0.26452917,"about_ca_system_score_codex":0.00011768914,"about_ca_system_score_gemma":0.00004270333,"threshold_uncertainty_score":0.4431753},"labels":[],"label_agreement":null},{"id":"W2151049971","doi":"10.1016/j.tim.2004.07.003","title":"Antibiotic-induced lateral transfer of antibiotic resistance","year":2004,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":172,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; Antibiotic resistance; Antibiotics; Microbiology","score_opus":0.025745006363298288,"score_gpt":0.3099550105532683,"score_spread":0.28421000418997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151049971","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025854828,0.97143215,0.000024873038,0.000019248348,0.00061505253,0.00037815192,0.00043923478,0.00002045369,0.0012159867],"genre_scores_gemma":[0.057602994,0.9376722,0.0006179785,0.000025626401,0.0001581668,0.0000035703888,0.0019698234,0.00012315351,0.0018265054],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964374,0.00036841125,0.00129452,0.0011109599,0.0000717729,0.0007169471],"domain_scores_gemma":[0.9984701,0.0000350559,0.00034622021,0.0010122128,0.000061826366,0.000074570366],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00029285406,0.0007512577,0.0022525538,0.00050170824,0.000041431183,0.000017037095,0.00080868875,0.0014843938,0.00007903305],"category_scores_gemma":[0.00003775559,0.0006655726,0.0006749686,0.00054967357,0.00040257405,0.0000051948505,0.00014931062,0.00045071248,0.000031065825],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052091264,0.0010297727,0.00093167054,0.037380636,0.0013790558,0.00025653487,0.00015775883,0.0000053533367,0.57802355,0.0011168778,0.0019092098,0.37728864],"study_design_scores_gemma":[0.0016868642,0.0005574662,0.00058700505,0.01739655,0.00051029114,0.00026042655,0.000014210976,1.1312581e-7,0.025901258,0.000026366944,0.9515001,0.0015593438],"about_ca_topic_score_codex":0.000024798308,"about_ca_topic_score_gemma":0.00033780417,"teacher_disagreement_score":0.9495909,"about_ca_system_score_codex":0.00011485719,"about_ca_system_score_gemma":0.00031612144,"threshold_uncertainty_score":0.9998119},"labels":[],"label_agreement":null},{"id":"W2152822134","doi":"10.1016/j.tim.2007.08.001","title":"The ecology of Ebola virus","year":2007,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":231,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; Public Health Agency of Canada","keywords":"Ebola virus; Biology; Threatened species; Virus; Ebolavirus; Evolutionary biology; Ecology; Outbreak; Evolutionary ecology; Virology; Host (biology)","score_opus":0.10838931356098457,"score_gpt":0.4633807008325727,"score_spread":0.35499138727158813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152822134","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010911067,0.9911127,0.0000026320956,0.000056850633,0.00034504975,0.00023421066,0.00005576502,0.00001327608,0.008070378],"genre_scores_gemma":[0.00008800092,0.9922406,0.000044220582,0.00004035585,0.00011969748,0.000034834535,0.00021657672,0.000025054678,0.007190681],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982484,0.00028170538,0.00069615606,0.0002769862,0.000036652204,0.00046008066],"domain_scores_gemma":[0.99885267,0.00049078476,0.00018717769,0.00036650273,0.000055327633,0.000047518264],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006992648,0.00022320745,0.0014116121,0.0008358617,0.000060666483,0.000004311432,0.00020560308,0.00064674515,0.00046889661],"category_scores_gemma":[0.000059895945,0.00012461182,0.00040379688,0.0007140223,0.00046246723,0.0000080193295,0.0001279103,0.00084035326,0.00013615984],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028062981,0.00008709348,0.000020664838,0.00077674777,0.000120772915,0.00003677454,0.000009033207,4.463115e-8,0.0005406121,0.00016892925,0.0025425637,0.9956687],"study_design_scores_gemma":[0.0003045306,0.0003129605,0.000073150666,0.0006077949,0.0001481504,0.0007325651,0.000004935326,3.1330052e-7,0.00008949083,0.000008003835,0.9976241,0.000093976],"about_ca_topic_score_codex":0.000111251145,"about_ca_topic_score_gemma":0.001044449,"teacher_disagreement_score":0.9955747,"about_ca_system_score_codex":0.00015099169,"about_ca_system_score_gemma":0.00018107076,"threshold_uncertainty_score":0.5134089},"labels":[],"label_agreement":null},{"id":"W2163420689","doi":"10.1016/j.tim.2005.12.008","title":"Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus","year":2006,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Horizontal gene transfer; Genome; Comparative genomics; Genetics; Gene; Phylogenetic tree; Genomics; Bacterial genome size; Bdellovibrio; Computational biology; Bacteria","score_opus":0.007435237337195513,"score_gpt":0.2145454986885148,"score_spread":0.2071102613513193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163420689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968503,0.0021118335,0.00006252084,0.00009257183,0.00010149196,0.000062652885,0.00005646667,9.120875e-7,0.0006612525],"genre_scores_gemma":[0.99935967,0.000057101675,0.00015412126,0.00007779316,0.00006321288,0.000010201572,0.00012397318,0.000006492202,0.00014741028],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99921143,0.00008701135,0.00024543,0.00021602343,0.000019951445,0.0002201605],"domain_scores_gemma":[0.99975544,0.000008014839,0.000027430668,0.00018392301,0.000017237295,0.000007958246],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016369739,0.00010670849,0.00014913491,0.000094994764,0.000019844263,0.0000032701907,0.00016081362,0.00011031232,0.000012478336],"category_scores_gemma":[0.0000025032455,0.00008129129,0.00006383056,0.00013547133,0.00010971694,4.1640865e-7,0.00003734939,0.000057731904,0.0000017053386],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041241186,0.00006645037,0.05123249,0.0000028211964,0.000008818617,0.0000019050566,0.00010026363,0.00016258072,0.9475765,0.000114439645,0.00021032829,0.00048213996],"study_design_scores_gemma":[0.0011333309,0.00030583682,0.7951275,0.0000057742923,0.000011645122,0.00005432697,0.000082738814,0.000012309588,0.18731105,0.000104200844,0.015657924,0.00019335866],"about_ca_topic_score_codex":0.0006902566,"about_ca_topic_score_gemma":0.0036538476,"teacher_disagreement_score":0.76026547,"about_ca_system_score_codex":0.000024167104,"about_ca_system_score_gemma":0.000020084317,"threshold_uncertainty_score":0.33149627},"labels":[],"label_agreement":null},{"id":"W2163811015","doi":"10.1016/s0966-842x(02)00002-1","title":"Candida biofilms and their role in infection","year":2003,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":1141,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biofilm; Microbiology; Candida albicans; Biology; Fluconazole; Hypha; Amphotericin B; Antifungal; Candida infections; Bacteria","score_opus":0.03407321368086098,"score_gpt":0.33991562421736576,"score_spread":0.3058424105365048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163811015","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012275083,0.98471177,9.919979e-7,0.00001365169,0.00012891435,0.00020644709,0.000048830912,0.00001431399,0.0026000056],"genre_scores_gemma":[0.005259823,0.9929379,0.000028092976,0.000057893798,0.000032954802,0.000025421412,0.00035578688,0.00001997593,0.0012821174],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985462,0.0002382847,0.0004560805,0.0004453782,0.00001613988,0.00029795818],"domain_scores_gemma":[0.99950165,0.000074469215,0.00010594413,0.00026066866,0.000013275819,0.00004398908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028807425,0.00028790793,0.0014633933,0.0005563322,0.000019216825,0.0000047513927,0.00005037838,0.0005692647,0.00021096165],"category_scores_gemma":[0.000032130152,0.00019654368,0.00016765586,0.0004800368,0.00014411806,0.000018051083,0.00003135445,0.00053959235,0.000019539753],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025443987,0.000090265006,0.01726131,0.0017945956,0.000036638266,0.000019942641,0.00007037831,3.0048785e-8,0.00042228645,0.000025466612,0.00028376863,0.97996986],"study_design_scores_gemma":[0.0004741787,0.00012608504,0.003443543,0.0021319606,0.000075525575,0.00023054628,0.00001973013,3.6660742e-7,0.00001715768,0.000020981593,0.99326843,0.00019150348],"about_ca_topic_score_codex":0.0003070125,"about_ca_topic_score_gemma":0.004043225,"teacher_disagreement_score":0.99298465,"about_ca_system_score_codex":0.00018540944,"about_ca_system_score_gemma":0.00011248699,"threshold_uncertainty_score":0.8014819},"labels":[],"label_agreement":null},{"id":"W2166574745","doi":"10.1016/j.tim.2013.02.004","title":"Respiratory syncytial virus interaction with human airway epithelium","year":2013,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Hospital for Sick Children; Public Health Agency; Invest Northern Ireland","keywords":"Biology; Respiratory epithelium; Virus; In vivo; Epithelium; Respiratory system; Pathogenesis; Virology; Airway; Mononegavirales; Pathogen; Immunology; Pneumovirinae; Pneumovirus; Paramyxoviridae; Viral disease; Medicine; Anatomy; Genetics","score_opus":0.13087571967332903,"score_gpt":0.4514206983342883,"score_spread":0.3205449786609592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166574745","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002508791,0.9867354,0.000008208269,0.000028778335,0.00042976256,0.0010319941,0.00007268263,0.00012424446,0.00906011],"genre_scores_gemma":[0.0004526814,0.9878831,0.00013185258,0.00026905176,0.00083516026,0.0008567683,0.00082526647,0.00021865485,0.008527482],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.996411,0.00087377237,0.0010445963,0.00087904383,0.00011261494,0.00067897193],"domain_scores_gemma":[0.9982911,0.00014384162,0.00039102664,0.0008945992,0.0001298316,0.00014963039],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00045163036,0.0006386114,0.002313325,0.0026983535,0.00011582462,0.000037824015,0.0003214194,0.00094464666,0.004307818],"category_scores_gemma":[0.000053339965,0.00043968705,0.00039228925,0.0010937674,0.00043873297,0.00012358677,0.00016283704,0.0020854822,0.0017593572],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077791716,0.00029467678,0.000097679156,0.0024810636,0.0002922698,0.00018486433,0.000026753,6.7085085e-7,0.0082114665,0.00004522495,0.0076596783,0.98062783],"study_design_scores_gemma":[0.0008652151,0.0016417889,0.00005016674,0.0035835851,0.0002956742,0.0006835363,0.000008364924,3.5534433e-7,0.00036771462,0.000002229042,0.99210656,0.00039480525],"about_ca_topic_score_codex":0.00025665606,"about_ca_topic_score_gemma":0.00047238107,"teacher_disagreement_score":0.9844469,"about_ca_system_score_codex":0.00085598096,"about_ca_system_score_gemma":0.0003371018,"threshold_uncertainty_score":0.9998055},"labels":[],"label_agreement":null},{"id":"W2167458075","doi":"10.1016/j.tim.2004.02.007","title":"Gene duplication and biased functional retention of paralogs in bacterial genomes","year":2004,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Cancer Society Research Institute; McGill University","keywords":"Gene duplication; Biology; Genome; Gene; Operon; Genetics; Adaptation (eye); Tandem exon duplication; Bacterial genome size; Functional divergence; Evolutionary biology; Computational biology; Genome evolution; Gene family","score_opus":0.018781063081141414,"score_gpt":0.23605919882478962,"score_spread":0.2172781357436482,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167458075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99812186,0.0014161785,0.00005702174,0.00012085266,0.0001075823,0.000051824307,0.00004400669,0.0000010436868,0.00007962701],"genre_scores_gemma":[0.998393,0.00038346523,0.00065423106,0.00003141042,0.000051291012,0.000012378164,0.00042397267,0.000005641777,0.00004461417],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994073,0.000028579909,0.00020376193,0.00022752881,0.000010797667,0.00012203415],"domain_scores_gemma":[0.9998038,0.000004951214,0.000062402425,0.0000983253,0.000017380404,0.000013169596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000096638265,0.00008040619,0.00013303968,0.00010592138,0.000015056541,0.0000021369158,0.000045207948,0.0001127379,0.000014212146],"category_scores_gemma":[0.000007940972,0.00008125758,0.000029578297,0.00007810899,0.00009290948,5.4634967e-7,0.00004890909,0.000035140278,0.000001117777],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008837403,0.000040177663,0.021653116,0.0000037031482,0.000014717116,4.9692375e-7,0.00003830498,0.00010588837,0.9756714,0.00006708732,0.000023253719,0.002293478],"study_design_scores_gemma":[0.0020503942,0.00026097035,0.5972434,0.000005750028,0.0000073817087,0.000027830254,0.000022030934,0.0000029372031,0.3979175,0.00047672977,0.0018481581,0.00013690148],"about_ca_topic_score_codex":0.000046746103,"about_ca_topic_score_gemma":0.0002732949,"teacher_disagreement_score":0.5777539,"about_ca_system_score_codex":0.000014013795,"about_ca_system_score_gemma":0.000016561768,"threshold_uncertainty_score":0.3313588},"labels":[],"label_agreement":null},{"id":"W2169163713","doi":"10.1016/j.tim.2012.01.002","title":"Antibiotic resistance is ancient: implications for drug discovery","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":146,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Metagenomics; Antibiotics; Antibiotic resistance; Biology; Drug resistance; Resistance (ecology); Ecology; Profiling (computer programming); Microbiology; Biotechnology; Gene; Genetics","score_opus":0.024956661332104065,"score_gpt":0.3034520689820775,"score_spread":0.27849540764997344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169163713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99620295,0.00072668475,0.00039189737,0.001050174,0.00034596765,0.00011972719,0.00028282526,0.000012527612,0.00086725346],"genre_scores_gemma":[0.9904845,0.000020344009,0.0015036461,0.00050621544,0.00016133575,0.000017905571,0.00090211106,0.000012312146,0.006391645],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909794,0.00005264662,0.00022176135,0.00030154278,0.000010838762,0.00031524655],"domain_scores_gemma":[0.9994696,0.000023300312,0.00007493756,0.00035290277,0.000039695053,0.000039593044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025770173,0.00010120899,0.000120795085,0.000074296615,0.00006880816,0.00001891517,0.00015840681,0.00010267762,0.000025632615],"category_scores_gemma":[0.00007308941,0.00010128638,0.00007039149,0.00013914256,0.00008258152,0.000009521723,0.000055400178,0.0000472401,0.000009908809],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025797337,0.00008159994,0.03926768,0.000010500429,0.000007717016,2.4513778e-8,0.00009243703,3.8128493e-7,0.94102216,0.0006185837,0.018018153,0.00085495925],"study_design_scores_gemma":[0.00079673465,0.00004708823,0.43280444,0.000017081748,0.000019160096,0.000013835953,0.00009131884,0.000002077885,0.3292898,0.00014469142,0.2364235,0.0003502719],"about_ca_topic_score_codex":0.000008428493,"about_ca_topic_score_gemma":0.00027167294,"teacher_disagreement_score":0.61173236,"about_ca_system_score_codex":0.00002251868,"about_ca_system_score_gemma":0.000018661282,"threshold_uncertainty_score":0.41303387},"labels":[],"label_agreement":null},{"id":"W2169661534","doi":"10.1016/j.tim.2015.08.006","title":"No-Go’ing Back: Co-opting RVB-2 to Control HIV-1 Gene Expression and Immune Response","year":2015,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research","keywords":"Biology; Viral envelope; Viral matrix protein; Glycoprotein; Virus; Virology; Group-specific antigen; Viral entry; Cell biology; Infectivity; Viral replication; Molecular biology","score_opus":0.02290621160965091,"score_gpt":0.2935294857993362,"score_spread":0.2706232741896853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169661534","genre_codex":"commentary","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3957916,0.05245331,0.00033840965,0.4887895,0.0063937474,0.004528406,0.026420226,0.0006507963,0.024634011],"genre_scores_gemma":[0.117359586,0.00058909657,0.0057805832,0.24825072,0.0029603022,0.0010706395,0.08758276,0.000664992,0.5357413],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9938107,0.0025450361,0.00082611426,0.001186348,0.00005176792,0.0015800078],"domain_scores_gemma":[0.9977514,0.00092586875,0.000271464,0.0008132522,0.00014317452,0.00009483484],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0012622577,0.0007311663,0.0013633093,0.0011972156,0.00020051587,0.00003831948,0.0005888774,0.0021892022,0.0027039275],"category_scores_gemma":[0.0002952523,0.0006168469,0.0001867323,0.00024815145,0.00048445116,0.00006518053,0.00037647013,0.0024281472,0.014794084],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019167912,0.00005266116,0.00021339256,0.000018832749,0.00016065776,0.00032459712,0.00019627713,0.0000020021828,0.5103176,5.399184e-7,0.48546675,0.0013298562],"study_design_scores_gemma":[0.006784428,0.000873609,0.00045156563,0.00016716443,0.000050272254,0.0006570884,0.00003064127,5.8738175e-7,0.043378774,0.000006206252,0.9470263,0.0005733716],"about_ca_topic_score_codex":0.000113202026,"about_ca_topic_score_gemma":0.000022052262,"teacher_disagreement_score":0.5111073,"about_ca_system_score_codex":0.00034016385,"about_ca_system_score_gemma":0.00018006613,"threshold_uncertainty_score":0.9998733},"labels":[],"label_agreement":null},{"id":"W2219959112","doi":"10.1016/j.tim.2015.08.009","title":"Microbial Malaise: How Can We Classify the Microbiome?","year":2015,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Taxonomy (biology); Microbiome; Taxonomic rank; Bacterial taxonomy; Evolutionary biology; Metagenomics; Phylogenetics; Human Microbiome Project; Molecular taxonomy; Data science; Ecology; Computational biology; Taxon; Human microbiome; Bioinformatics; Computer science; Genetics; Gene","score_opus":0.029773983169260127,"score_gpt":0.2859319046191029,"score_spread":0.2561579214498428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2219959112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96334034,0.0025492979,0.000053737604,0.030286657,0.0012578767,0.0002799622,0.00035428483,0.000040066167,0.0018377809],"genre_scores_gemma":[0.9855477,0.00020887157,0.00065680634,0.0021683986,0.0004548783,0.000025181713,0.0011634207,0.000050977127,0.009723763],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977587,0.00032857704,0.00035614328,0.0006839434,0.000043779288,0.0008288808],"domain_scores_gemma":[0.9988957,0.000019653453,0.00014706294,0.00068597647,0.00009186727,0.00015975224],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044914545,0.00036314977,0.0003626955,0.00024913944,0.00011992543,0.000046023106,0.00065859896,0.0005232258,0.000079178724],"category_scores_gemma":[0.00003753491,0.0002758232,0.00015588802,0.0003093494,0.0004591506,0.000004639048,0.00031198806,0.00038609537,0.000066259476],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106982414,0.00007620705,0.0020442256,0.000009912589,0.000033388777,0.0000099997615,0.00021999744,0.0000064105307,0.85220116,0.00010549029,0.14250673,0.0026795026],"study_design_scores_gemma":[0.0022724175,0.0004095445,0.0028533402,0.00002131105,0.000023471634,0.00063917076,0.00033549123,0.0000028105867,0.11990827,0.000050826682,0.873013,0.00047031458],"about_ca_topic_score_codex":0.000112761285,"about_ca_topic_score_gemma":0.0027142896,"teacher_disagreement_score":0.7322929,"about_ca_system_score_codex":0.000107975866,"about_ca_system_score_gemma":0.00025141775,"threshold_uncertainty_score":0.9999694},"labels":[],"label_agreement":null},{"id":"W2256712157","doi":"10.1016/j.tim.2015.10.012","title":"Household Transmission of Influenza Virus","year":2015,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":152,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Transmission (telecommunications); Pandemic; Environmental health; Influenza A virus; Psychological intervention; Risk of infection; Public health; Biology; Hygiene; Airborne transmission; Herd immunity; Vaccination; Virology; Medicine; Virus; Disease; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","score_opus":0.2761191617067933,"score_gpt":0.4695332568404848,"score_spread":0.1934140951336915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2256712157","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011228152,0.99585944,0.0000018970197,0.000018314187,0.000111023954,0.00042700063,0.00042804301,0.00004523636,0.002996756],"genre_scores_gemma":[0.0000062529975,0.997959,0.00039235005,0.00012321513,0.00008730282,0.00006609399,0.00030063422,0.000069590715,0.0009955298],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99721456,0.0003725078,0.0011710243,0.0005205155,0.00013201077,0.00058936496],"domain_scores_gemma":[0.9986924,0.00015841979,0.00031660293,0.0005814123,0.00011370837,0.00013743824],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006735543,0.00049996073,0.0036261368,0.0015461924,0.00002702748,0.0000038343674,0.0003311398,0.0008220288,0.0002632485],"category_scores_gemma":[0.000097953365,0.00034858187,0.0005281262,0.0009193126,0.00042677933,0.000028856539,0.00018153292,0.0009808703,0.00008129846],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000140524,0.00017580726,0.000031588184,0.0077037453,0.00026716845,0.000071202114,0.00014113175,8.687902e-7,0.00082549953,0.000013944219,0.007695754,0.98293275],"study_design_scores_gemma":[0.0012582547,0.00035024955,0.00001972287,0.00621481,0.00042437096,0.00016474578,0.000007390905,2.546972e-7,0.000091365655,0.000007488545,0.99121237,0.00024896525],"about_ca_topic_score_codex":0.00009296308,"about_ca_topic_score_gemma":0.00002311437,"teacher_disagreement_score":0.98351663,"about_ca_system_score_codex":0.00031174667,"about_ca_system_score_gemma":0.0004503936,"threshold_uncertainty_score":0.99989665},"labels":[],"label_agreement":null},{"id":"W2277826994","doi":"10.1016/j.tim.2016.02.007","title":"The Persistent Mystery of Adenovirus Persistence","year":2016,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Biology; Lytic cycle; Persistence (discontinuity); Virology; Adenovirus infection; Immunology; Virus","score_opus":0.030072418495378762,"score_gpt":0.2910687388127845,"score_spread":0.2609963203174057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2277826994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99433017,0.003342518,0.000014296827,0.0011545487,0.00013209629,0.00006960421,0.00004879033,0.0000052519367,0.000902726],"genre_scores_gemma":[0.9944904,0.0005198263,0.00004769032,0.000109622604,0.00006141336,0.000016320071,0.000025149558,0.000014642727,0.0047149644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987877,0.00021681153,0.0002458506,0.00031989993,0.000050022787,0.0003797321],"domain_scores_gemma":[0.9992734,0.00005819557,0.00007788174,0.0004932138,0.000058136895,0.000039180668],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037573528,0.00013035581,0.00015834752,0.00010264987,0.00006307472,0.0000054856623,0.0004693425,0.00015123923,0.00011104013],"category_scores_gemma":[0.00004658229,0.000074534684,0.00016619578,0.00013740065,0.00050698966,0.000001970254,0.00015082292,0.000079312595,0.000027404823],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009874203,0.00003628106,0.0014287641,0.0000034654297,0.00006075292,0.0000019528595,0.000047807967,0.0000043726504,0.9614807,0.000020976498,0.0011746667,0.034752883],"study_design_scores_gemma":[0.0012956301,0.0030862761,0.0012460531,0.000024099136,0.00001127296,0.000058842,0.0001733262,0.0000026214534,0.956691,0.00002627558,0.037186403,0.0001981679],"about_ca_topic_score_codex":0.000008632747,"about_ca_topic_score_gemma":0.00054356793,"teacher_disagreement_score":0.036011737,"about_ca_system_score_codex":0.000035676032,"about_ca_system_score_gemma":0.00006767318,"threshold_uncertainty_score":0.30394363},"labels":[],"label_agreement":null},{"id":"W2306794997","doi":"10.1016/j.tim.2016.03.003","title":"Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":3112,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Biology; Coronavirus disease 2019 (COVID-19); Virology; Recombination; Pathogenesis; Coronavirus; Epidemiology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Genetics; Evolutionary biology; Immunology; Gene; Disease; Outbreak; Infectious disease (medical specialty)","score_opus":0.15326457104542607,"score_gpt":0.4499215090295181,"score_spread":0.29665693798409204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2306794997","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0031729396,0.9958005,0.000008857006,0.000067675785,0.00016136814,0.0002807241,0.00016023483,0.000018812665,0.0003288794],"genre_scores_gemma":[0.00010315323,0.997176,0.00038888046,0.0018903838,0.00007443398,0.00008818892,0.000075409334,0.000041006548,0.00016256499],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971735,0.00078874157,0.0009873629,0.0005889907,0.000035833684,0.0004255672],"domain_scores_gemma":[0.9978553,0.0012422305,0.00035226918,0.0004473789,0.00007331432,0.000029522766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075579534,0.00032779283,0.0024539668,0.0009363772,0.000022330267,0.0000013399746,0.00022454538,0.00072099373,0.00008597207],"category_scores_gemma":[0.00044531908,0.00021669701,0.00027760872,0.00038384096,0.00051943964,0.000014305851,0.00015621711,0.00029956494,0.00006326244],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030730662,0.0000768801,0.01106043,0.0026323313,0.00011351628,0.000028076549,0.000013368042,2.0688624e-9,0.0020999722,0.000073728326,0.0003582517,0.9835127],"study_design_scores_gemma":[0.0007175515,0.00027655787,0.003226198,0.0032474867,0.00020852486,0.000578598,0.000002567874,2.1524826e-7,0.00012327413,0.00012494407,0.9913018,0.00019232197],"about_ca_topic_score_codex":0.00005922111,"about_ca_topic_score_gemma":0.00004571108,"teacher_disagreement_score":0.9909435,"about_ca_system_score_codex":0.00013071258,"about_ca_system_score_gemma":0.00022849871,"threshold_uncertainty_score":0.8836648},"labels":[],"label_agreement":null},{"id":"W2325428500","doi":"10.1016/j.tim.2016.03.001","title":"Role of the Gram-Negative Envelope Stress Response in the Presence of Antimicrobial Agents","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Cell envelope; Biology; Periplasmic space; Antimicrobial; Gram; Bacterial outer membrane; Envelope (radar); Gram-negative bacteria; Efflux; Microbiology; Antimicrobial peptides; Biophysics; Cell biology; Bacteria; Biochemistry; Escherichia coli; Genetics","score_opus":0.0206705795339117,"score_gpt":0.3134513523805527,"score_spread":0.292780772846641,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2325428500","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.291747,0.70435077,0.000004650217,0.000109068,0.00043478984,0.0008092733,0.002035335,0.000004088251,0.0005050035],"genre_scores_gemma":[0.14532508,0.853481,0.00013270183,0.000043426735,0.000070389775,0.00002338364,0.0002414776,0.00003781082,0.00064474304],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962442,0.0020413555,0.0008161661,0.0004931658,0.000059152113,0.00034596105],"domain_scores_gemma":[0.99802536,0.00029246445,0.000697169,0.0009192446,0.00004921548,0.000016542906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006724654,0.00034132425,0.00093457045,0.00018885483,0.000028156937,0.0000063073185,0.0014881315,0.000576136,0.00004406976],"category_scores_gemma":[0.0003179591,0.00017803494,0.00032480565,0.00039622118,0.0007841592,0.000003020502,0.0004097472,0.00027124025,0.0000045136335],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016455997,0.0005354324,0.00472334,0.0023728365,0.0003869044,0.000016781712,0.00085279497,0.0000045863185,0.72755116,0.00009838512,0.004407894,0.2574043],"study_design_scores_gemma":[0.0010409388,0.00029872888,0.012653323,0.009670623,0.00013942496,0.00011375181,0.00015207205,2.2927897e-7,0.05018312,0.000040556333,0.92510504,0.00060218526],"about_ca_topic_score_codex":0.000034962868,"about_ca_topic_score_gemma":0.00020441567,"teacher_disagreement_score":0.92069715,"about_ca_system_score_codex":0.000037651815,"about_ca_system_score_gemma":0.00021141488,"threshold_uncertainty_score":0.72600543},"labels":[],"label_agreement":null},{"id":"W2462758075","doi":"10.1016/j.tim.2016.06.010","title":"Thiol-Disulfide Exchange in Gram-Positive Firmicutes","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"","keywords":"Biology; Firmicutes; Gram; Microbiology; Thiol; Disulfide bond; Biochemistry; Bacteria; Genetics","score_opus":0.043881116856698044,"score_gpt":0.30601652986159766,"score_spread":0.2621354130048996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2462758075","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00080718624,0.9949755,2.3447564e-7,0.0002682023,0.0003001437,0.00029235103,0.0015530154,0.00003734992,0.0017660379],"genre_scores_gemma":[0.00052121445,0.995554,0.000023352293,0.00010664568,0.00019045097,0.0000654756,0.0022958918,0.00000400583,0.0012389753],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997531,0.00037958237,0.00065519207,0.0007167699,0.000038187165,0.0006792831],"domain_scores_gemma":[0.9992073,0.00034239565,0.000249588,0.00011680028,0.000020430922,0.000063463085],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003138359,0.00047455262,0.0013580667,0.00017845273,0.000052484902,0.000022904022,0.0006054795,0.00081967964,0.00091591664],"category_scores_gemma":[0.000022566703,0.00015559488,0.00034730046,0.0007778886,0.00014434752,0.00004484369,0.0002710936,0.00046871128,0.00018935556],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008564373,0.0001228031,0.000038813905,0.00014521292,0.000028939596,0.00003026266,0.000024314488,1.4264641e-8,0.0017172561,0.000108674656,0.0007430583,0.9970321],"study_design_scores_gemma":[0.00022057614,0.00020302153,0.00037173886,0.003094217,0.00003313493,0.00006506032,0.000009365704,1.8280686e-7,0.000024956316,0.00011691194,0.9954322,0.00042863016],"about_ca_topic_score_codex":0.00012721091,"about_ca_topic_score_gemma":0.0017430354,"teacher_disagreement_score":0.9966034,"about_ca_system_score_codex":0.0001794026,"about_ca_system_score_gemma":0.000017333385,"threshold_uncertainty_score":0.9999974},"labels":[],"label_agreement":null},{"id":"W2489596030","doi":"10.1016/j.tim.2016.06.009","title":"Antibiotic Adjuvants: Rescuing Antibiotics from Resistance","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":604,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Antibiotics; Antibiotic resistance; Biology; Microbiology","score_opus":0.023986475937073207,"score_gpt":0.31658930365428645,"score_spread":0.29260282771721324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2489596030","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015922199,0.99263734,0.0000844791,0.000030866362,0.0012963263,0.00028163558,0.0016417352,0.00003905946,0.0023963717],"genre_scores_gemma":[0.0013135591,0.98476976,0.0016324841,0.00006508809,0.00077952497,0.0000020253503,0.00398677,0.00017170204,0.0072790743],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9953561,0.0006078654,0.0013007431,0.0016926548,0.000084690335,0.00095793663],"domain_scores_gemma":[0.997377,0.00013512433,0.0007124606,0.001605526,0.000061453655,0.00010843672],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00035232503,0.0009213433,0.002234376,0.0004836309,0.00008008344,0.000042847358,0.0011638013,0.0017324509,0.00023849889],"category_scores_gemma":[0.00016463202,0.0007240345,0.00058456964,0.000451796,0.00052317034,0.0000073721662,0.0004593678,0.00048601133,0.0002219008],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001904965,0.00020936185,0.0009601517,0.0026711193,0.00067976565,0.00019692739,0.000029109258,3.0741646e-7,0.05533842,0.0002066793,0.02356543,0.9159522],"study_design_scores_gemma":[0.0005305402,0.000076380966,0.0001828479,0.010404324,0.00016213731,0.00004965236,0.000007953259,8.684184e-8,0.0010793554,0.00002916949,0.9866041,0.0008734418],"about_ca_topic_score_codex":0.00001804667,"about_ca_topic_score_gemma":0.00046250937,"teacher_disagreement_score":0.9630387,"about_ca_system_score_codex":0.00015905526,"about_ca_system_score_gemma":0.00020656656,"threshold_uncertainty_score":0.9995635},"labels":[],"label_agreement":null},{"id":"W2511688517","doi":"10.1016/j.tim.2016.08.005","title":"Color Me Infected: Painting Cellular Chromatin with a Viral Histone Mimic","year":2016,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Chromatin; Biology; Histone; Cell biology; Cell; Genetics; DNA","score_opus":0.011496963851284292,"score_gpt":0.2765864346413261,"score_spread":0.2650894707900418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2511688517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9365994,0.0017915973,0.00009115284,0.05941542,0.00031632156,0.00039781348,0.00035182308,0.000061440434,0.00097505585],"genre_scores_gemma":[0.47211906,0.00057991425,0.0020483541,0.4091615,0.012817396,0.00082175655,0.030520292,0.0010327924,0.07089893],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99627393,0.00075169286,0.0005235131,0.0011354296,0.00011532022,0.0012001331],"domain_scores_gemma":[0.99854034,0.000070674934,0.00029883458,0.00092947483,0.00009715655,0.000063528],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004814047,0.00063449255,0.0007086511,0.0005788096,0.00008794584,0.000023152877,0.00072569994,0.0017429462,0.0006613241],"category_scores_gemma":[0.00003938295,0.0004921976,0.00020178178,0.0002587732,0.00058830786,0.000003878464,0.00027052918,0.0011741058,0.00012779844],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062229,0.00003360325,0.000113590344,0.000039464474,0.00015088858,0.00018128744,0.000025611595,0.000003647872,0.7371561,8.830513e-7,0.25849494,0.0031777297],"study_design_scores_gemma":[0.0018100005,0.0036117325,0.000027032316,0.00008687187,0.000032789405,0.00014210121,0.0000052118785,0.0000046224754,0.4272269,0.000010776512,0.56637675,0.00066523807],"about_ca_topic_score_codex":0.000054996166,"about_ca_topic_score_gemma":0.0005738029,"teacher_disagreement_score":0.4644803,"about_ca_system_score_codex":0.00019997625,"about_ca_system_score_gemma":0.0002238463,"threshold_uncertainty_score":0.99975294},"labels":[],"label_agreement":null},{"id":"W2547758052","doi":"10.1016/j.tim.2016.10.002","title":"NKp46 Is an NK Cell Fungicidal Pattern Recognition Receptor","year":2016,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Bacterial adhesin; Innate immune system; Receptor; Microbiology; Natural killer cell; Immunology; Candida glabrata; Host (biology); Cell biology; Immune system; Gene; Virulence; Antifungal; Cytotoxicity; Genetics; In vitro","score_opus":0.025655328516625935,"score_gpt":0.24637098454286308,"score_spread":0.22071565602623713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2547758052","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09148699,0.009034596,0.0004928658,0.7095961,0.122644976,0.0015815118,0.0064826957,0.0013465987,0.057333667],"genre_scores_gemma":[0.012660203,0.00057520566,0.00007078554,0.5974983,0.0031531306,0.00013912097,0.0696414,0.00021687831,0.31604496],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99581146,0.0010353655,0.0008818934,0.0011711293,0.000029477444,0.0010706923],"domain_scores_gemma":[0.9984119,0.00018186483,0.00050625595,0.0007506957,0.00012499891,0.000024276576],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.00027746576,0.00070838176,0.0008368256,0.0011424408,0.0001450045,0.000028295279,0.00053402473,0.0038131527,0.09400928],"category_scores_gemma":[0.00001561125,0.00059843523,0.00033479717,0.00022892935,0.00029041956,0.00020083429,0.00012868867,0.002910552,0.024790697],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001064505,0.00006919055,0.000059666814,0.000023786662,0.00006840274,0.000016746088,0.00015651605,3.4992276e-8,0.37290892,2.2354935e-7,0.5728326,0.053757466],"study_design_scores_gemma":[0.0016411835,0.00053606875,0.000040282077,0.00010770214,0.000057325145,0.00023527912,0.000048078135,3.2788748e-7,0.12375409,0.000016445154,0.8728985,0.0006647153],"about_ca_topic_score_codex":0.00021433823,"about_ca_topic_score_gemma":0.00006131437,"teacher_disagreement_score":0.3000659,"about_ca_system_score_codex":0.00026741932,"about_ca_system_score_gemma":0.000053004875,"threshold_uncertainty_score":0.9996467},"labels":[],"label_agreement":null},{"id":"W2555982633","doi":"10.1016/j.tim.2016.10.003","title":"Adaptor Proteins of Type VI Secretion System Effectors","year":2016,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Effector; Secretion; Biology; Type VI secretion system; Signal transducing adaptor protein; Cell biology; Secretory protein; Computational biology; Signal transduction; Genetics; Virulence; Biochemistry; Gene","score_opus":0.01208412972227006,"score_gpt":0.2693545310910405,"score_spread":0.25727040136877044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2555982633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986904,0.00025528975,0.00009587457,0.00010102565,0.00016887001,0.00012884293,0.00008574802,0.000011572956,0.00046233294],"genre_scores_gemma":[0.9988813,0.000057505313,0.0001993133,0.0000084386575,0.00008251162,0.000027004164,0.000101389596,0.00001247191,0.0006300993],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909294,0.00017556884,0.00019245684,0.00026268171,0.000028442231,0.00024789764],"domain_scores_gemma":[0.9995755,0.000020517497,0.00007135047,0.00024170535,0.00006300132,0.00002793346],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018418582,0.000116436895,0.00020222293,0.00012125398,0.000019839337,0.000002145713,0.0001481629,0.00015759224,0.000037889953],"category_scores_gemma":[0.000083379295,0.000076905715,0.000052513416,0.00013117112,0.0001612899,0.0000019824333,0.00013581969,0.000044786433,0.000015117477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022502604,0.00002499247,0.004117066,0.000034019846,0.00004185461,0.0000020423563,0.000014135631,5.091846e-7,0.9915901,0.000056323734,0.0007386194,0.0031553141],"study_design_scores_gemma":[0.000992559,0.001055167,0.0111440895,0.00008475899,0.0000072269963,0.000020194542,0.000024337316,0.0000022648449,0.97657865,0.0000034622562,0.009943732,0.00014357526],"about_ca_topic_score_codex":0.000025931997,"about_ca_topic_score_gemma":0.00008864468,"teacher_disagreement_score":0.015011464,"about_ca_system_score_codex":0.000043861215,"about_ca_system_score_gemma":0.000029640043,"threshold_uncertainty_score":0.3136124},"labels":[],"label_agreement":null},{"id":"W2558664061","doi":"10.1016/j.tim.2016.11.008","title":"Disentangling Interactions in the Microbiome: A Network Perspective","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Complex Network Analysis Techniques","field":"Physics and Astronomy","cited_by":890,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microbiome; Perspective (graphical); Computational biology; Evolutionary biology; Ecology; Genetics; Computer science","score_opus":0.041283181832990276,"score_gpt":0.39063885984119473,"score_spread":0.34935567800820444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2558664061","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000018951023,0.9900738,0.00018335851,0.00014926444,0.0002567498,0.00031532315,0.00018241728,0.000036154266,0.008783968],"genre_scores_gemma":[0.003393337,0.99082947,0.0005112099,0.00007119292,0.0018430593,0.00047923258,0.0013235093,0.000082049184,0.0014669464],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974433,0.000726953,0.00068934803,0.00057196006,0.000027723112,0.00054071925],"domain_scores_gemma":[0.99857587,0.00047925484,0.00035153906,0.00054258213,0.000027971133,0.000022800989],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00035948164,0.00043545946,0.0013269865,0.0006887768,0.00007733022,0.000034419172,0.0007142076,0.000113723916,0.001163449],"category_scores_gemma":[0.0000037296463,0.00026519655,0.0006673246,0.0014061532,0.0001427953,0.000043392385,0.00020040109,0.00074622117,0.00008236685],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004853006,0.00014576172,0.00036388275,0.000059369486,0.00026382803,0.0000103581,0.00029250182,0.0000030466513,0.000010172556,0.008843093,0.014544682,0.97545844],"study_design_scores_gemma":[0.00013567775,0.000012305861,0.000006770757,0.0024255814,0.00017536942,0.000025179283,0.00014581475,0.000003000489,6.3306794e-7,0.0019109113,0.9948598,0.00029896482],"about_ca_topic_score_codex":0.00017571451,"about_ca_topic_score_gemma":0.00067848223,"teacher_disagreement_score":0.9803151,"about_ca_system_score_codex":0.0003144881,"about_ca_system_score_gemma":0.000053431544,"threshold_uncertainty_score":0.99998003},"labels":[],"label_agreement":null},{"id":"W2559683962","doi":"10.1016/j.tim.2016.11.007","title":"Lactobacillus iners : Friend or Foe?","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":461,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Biology; Dysbiosis; Microbiology; Metagenomics; Bacterial vaginosis; Lactobacillus; Gardnerella vaginalis; Whole genome sequencing; Genome; Genetics; Microbiome; Gene; Bacteria","score_opus":0.08520265691531438,"score_gpt":0.4002956995719063,"score_spread":0.31509304265659194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559683962","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000711127,0.9872827,0.000010394783,0.000115060946,0.0021860371,0.00051596714,0.0006756596,0.00013700766,0.009006057],"genre_scores_gemma":[0.00009080776,0.93104845,0.000038769296,0.000020397047,0.00014823831,0.0002732219,0.0013839512,0.000095522555,0.066900656],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9943738,0.0016763138,0.0011589674,0.0014740762,0.000027595219,0.0012892201],"domain_scores_gemma":[0.99720305,0.0009566089,0.00042176765,0.0012760882,0.000098178745,0.000044291228],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000778831,0.00083065056,0.0026828917,0.0024744745,0.00014558635,0.000019279069,0.00094799383,0.001977896,0.015826806],"category_scores_gemma":[0.0004262878,0.00049677584,0.0006007988,0.0013774018,0.0010653886,0.00010714973,0.0004324714,0.0017722236,0.010397793],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009713251,0.00019986212,0.000017968277,0.0006124785,0.00052087754,0.000059190133,0.000053728105,9.621399e-8,0.0029674359,0.00020076378,0.014995687,0.9802748],"study_design_scores_gemma":[0.0008892384,0.00027879534,0.00001616709,0.0017175552,0.00013158063,0.0022115523,0.000015480093,6.5433605e-9,0.00017669918,0.000020640782,0.99394935,0.00059293344],"about_ca_topic_score_codex":0.000081049075,"about_ca_topic_score_gemma":0.00024131821,"teacher_disagreement_score":0.97968185,"about_ca_system_score_codex":0.0005940483,"about_ca_system_score_gemma":0.00047042812,"threshold_uncertainty_score":0.9997484},"labels":[],"label_agreement":null},{"id":"W2563256976","doi":"10.1016/j.tim.2016.12.003","title":"Rules of Engagement: The Type VI Secretion System in Vibrio cholerae","year":2016,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":129,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Vibrio cholerae; Type VI secretion system; Biology; Microbiology; Virulence; Quorum sensing; Pilus; Effector; Cholera toxin; Biofilm; Secretion; Host (biology); Bacteria; Cell biology; Ecology; Gene; Genetics","score_opus":0.04183602256008123,"score_gpt":0.3459612202563405,"score_spread":0.3041251976962593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2563256976","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0044979113,0.99329364,0.000005171258,0.000029782688,0.00030224214,0.00032010028,0.00028924143,0.000007776804,0.0012541048],"genre_scores_gemma":[0.004129837,0.9938292,0.000041397627,0.000011739552,0.00017024424,0.00009071465,0.0011124291,0.000033764587,0.00058066926],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975221,0.00093680975,0.0006164175,0.00048101376,0.000045386867,0.00039826505],"domain_scores_gemma":[0.99902874,0.0000778503,0.00027870503,0.00053776306,0.000053027856,0.000023900979],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007023192,0.0003190533,0.0009678373,0.0003266816,0.000039752722,0.000008815473,0.00051748817,0.00045373305,0.000060842507],"category_scores_gemma":[0.000090355235,0.00018791642,0.000209199,0.00024094645,0.00025155974,0.0000022337053,0.00047804636,0.00029424977,0.000047761543],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010271447,0.00007903713,0.00009132142,0.004631221,0.00042249766,0.000014265346,0.00009522253,8.0759946e-7,0.14150442,0.00024281567,0.0021858776,0.8506298],"study_design_scores_gemma":[0.0003584423,0.00017337529,0.00010404754,0.0027597276,0.000040313626,0.000035467147,0.000019277482,3.123195e-7,0.00040830375,0.0000026535145,0.99590087,0.00019719459],"about_ca_topic_score_codex":0.000027471087,"about_ca_topic_score_gemma":0.00009156476,"teacher_disagreement_score":0.993715,"about_ca_system_score_codex":0.0001135119,"about_ca_system_score_gemma":0.00010656678,"threshold_uncertainty_score":0.7663009},"labels":[],"label_agreement":null},{"id":"W2586604573","doi":"10.1016/j.tim.2017.01.006","title":"RNA Chaperones Step Out of Hfq’s Shadow","year":2017,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Fondation pour la Recherche Médicale","keywords":"Biology; Computational biology; RNA; Genetics; Cell biology; Evolutionary biology; Gene","score_opus":0.060890056498098574,"score_gpt":0.3791248681646895,"score_spread":0.3182348116665909,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586604573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9671768,0.00058578304,0.000013716647,0.0018495362,0.00039999705,0.000073074705,0.000018627068,0.000015375446,0.029867122],"genre_scores_gemma":[0.990022,0.00015427751,0.00019998352,0.00006472554,0.00004708784,0.00000855656,0.0000342857,0.000008335386,0.009460751],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993065,0.00004717801,0.00019871189,0.0001798672,0.000020233845,0.00024748564],"domain_scores_gemma":[0.99932444,0.000021472564,0.00008637267,0.0004957415,0.000046826968,0.000025119174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016657903,0.00008779292,0.0003100821,0.0002817938,0.00009480938,0.000006110365,0.00018041357,0.00017078275,0.0008381532],"category_scores_gemma":[0.0000696081,0.000069383335,0.00006936434,0.000057748726,0.00053011044,0.000044446195,0.00012647355,0.00025257684,0.00010092598],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015839026,0.00018337346,0.06552992,0.0000155311,0.00006735403,0.000017324282,0.0001297152,2.559414e-7,0.8447205,0.00035727397,0.0018919117,0.08692845],"study_design_scores_gemma":[0.0056938776,0.0023862557,0.8317043,0.00013155788,0.00005698169,0.00021902878,0.00016409147,0.000048730068,0.08825595,0.00012703176,0.07094864,0.00026351822],"about_ca_topic_score_codex":0.00026852553,"about_ca_topic_score_gemma":0.00044976213,"teacher_disagreement_score":0.76617444,"about_ca_system_score_codex":0.00002796045,"about_ca_system_score_gemma":0.000026135664,"threshold_uncertainty_score":0.91771895},"labels":[],"label_agreement":null},{"id":"W2587932471","doi":"10.1016/j.tim.2017.01.005","title":"The Secrets of Acinetobacter Secretion","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":99,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Acinetobacter baumannii; Biology; Secretion; Microbiology; Acinetobacter; Bacterial outer membrane; Pathogen; Pathogenicity; Secretory protein; Pathogenicity island; Antibiotics; Virulence; Bacteria; Pseudomonas aeruginosa; Escherichia coli; Gene; Genetics","score_opus":0.04679954357613362,"score_gpt":0.35928487755588273,"score_spread":0.3124853339797491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587932471","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017182134,0.99574536,0.0000063569864,0.00001878551,0.0005597457,0.00017024494,0.00015240557,0.0000045610745,0.0016243393],"genre_scores_gemma":[0.0010580336,0.99253166,0.000083785526,0.0000099814515,0.00020503692,0.000014520344,0.0019595071,0.00003832888,0.004099162],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99822146,0.00028951123,0.000647243,0.0004658013,0.000031162806,0.00034481223],"domain_scores_gemma":[0.9980335,0.000049064834,0.0007333129,0.0011131581,0.00004261185,0.000028339939],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003596282,0.00033615876,0.00097316824,0.00012354391,0.00008695462,0.000022255197,0.0008474857,0.00076922076,0.000051506177],"category_scores_gemma":[0.000090131834,0.00021848401,0.00036140042,0.00008422575,0.00047636576,0.000001976349,0.0002521414,0.0002488733,0.00001767253],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059248432,0.000026013255,0.00015191722,0.0008275999,0.00017194574,0.0000045707848,0.000008928863,1.1355225e-7,0.011863116,0.000058733243,0.0034178626,0.98340994],"study_design_scores_gemma":[0.0001554123,0.00011043152,0.00019734209,0.0008992339,0.00007891789,0.000074974756,0.00000345334,1.1031847e-7,0.0002054609,0.000008568619,0.9980552,0.0002108724],"about_ca_topic_score_codex":0.000008237607,"about_ca_topic_score_gemma":0.00024211303,"teacher_disagreement_score":0.99463737,"about_ca_system_score_codex":0.000031548963,"about_ca_system_score_gemma":0.00011299913,"threshold_uncertainty_score":0.890952},"labels":[],"label_agreement":null},{"id":"W2592565341","doi":"10.1016/j.tim.2017.02.001","title":"Streptomyces Exploration: Competition, Volatile Communication and New Bacterial Behaviours","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Streptomyces; Biology; Hypha; Context (archaeology); Streptomycetaceae; Bacteria; Microbiology; Botany; Actinomycetales; Genetics","score_opus":0.14520937614568144,"score_gpt":0.3816765528470015,"score_spread":0.2364671767013201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592565341","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005197037,0.9970257,0.0000010974127,0.0010439134,0.00034850455,0.00033266167,0.00023042686,0.000033212556,0.00046477417],"genre_scores_gemma":[0.00066075905,0.98731077,0.00059277134,0.00003458002,0.0004036289,0.0000046080395,0.007297287,0.000028557328,0.0036670396],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985336,0.00020486776,0.0005567001,0.00045681145,0.000030642816,0.0002173791],"domain_scores_gemma":[0.9986382,0.00006872905,0.00043724017,0.0007339154,0.00004738992,0.000074526004],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019694919,0.00032892916,0.001418424,0.00036046936,0.00012047281,0.00005411939,0.00026380524,0.0005243952,0.0013042749],"category_scores_gemma":[0.00005738828,0.00024648177,0.00016577475,0.00013367161,0.00023961293,0.000116508214,0.00015331645,0.00044958305,0.000031366486],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030861767,0.000053054362,0.00001991361,0.0007163796,0.000057995367,0.0000072613448,0.000054543052,7.940414e-9,0.0006983653,0.000056617915,0.010704622,0.9876004],"study_design_scores_gemma":[0.00046166935,0.00009256429,0.00006914396,0.004017583,0.0004429578,0.0002738664,0.000005929987,1.37287e-7,0.00009756829,0.000018482751,0.994287,0.00023308968],"about_ca_topic_score_codex":0.00020041723,"about_ca_topic_score_gemma":0.00051910954,"teacher_disagreement_score":0.9873673,"about_ca_system_score_codex":0.000077280536,"about_ca_system_score_gemma":0.0001535492,"threshold_uncertainty_score":0.99999875},"labels":[],"label_agreement":null},{"id":"W2594854482","doi":"10.1016/j.tim.2017.02.005","title":"Critical Streptococcus suis Virulence Factors: Are They All Really Critical?","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":351,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; Université de Montréal","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Wellcome Trust","keywords":"Virulence; Biology; Streptococcus suis; Microbiology; Pathogen; Virulence factor; Human pathogen; Immune system; Gene; Virology; Immunology; Genetics","score_opus":0.1873240638355416,"score_gpt":0.47956654504732227,"score_spread":0.29224248121178065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2594854482","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000297016,0.9903028,0.000005417098,0.00026439235,0.0009676018,0.0007598534,0.0012174456,0.00013407711,0.006051398],"genre_scores_gemma":[0.0043653795,0.9911207,0.00020138765,0.00009056119,0.0003117018,0.00041831442,0.0016885473,0.00010127506,0.0017021443],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965616,0.00034851715,0.00097648805,0.0011250702,0.00008295753,0.0009053846],"domain_scores_gemma":[0.9968616,0.0010250617,0.00031177647,0.001385588,0.0001425832,0.00027341137],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019369206,0.0008290231,0.0030901935,0.0007441292,0.00017061566,0.000067964145,0.00043546612,0.0012132868,0.0017348345],"category_scores_gemma":[0.0011676678,0.0005817594,0.00089251436,0.00019615314,0.0006880119,0.00009164358,0.00022016266,0.0010997399,0.00040899473],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038737126,0.001528275,0.017942969,0.004791647,0.0009633851,0.0011940225,0.00007599489,7.220847e-8,0.000055469853,0.0008512711,0.003256255,0.9693019],"study_design_scores_gemma":[0.0007055613,0.00052892475,0.0037537753,0.009682017,0.0020243784,0.00056027906,0.000017551638,3.8465518e-7,0.000011403285,0.00013929002,0.98202026,0.00055615406],"about_ca_topic_score_codex":0.00036497894,"about_ca_topic_score_gemma":0.000486525,"teacher_disagreement_score":0.978764,"about_ca_system_score_codex":0.00038941833,"about_ca_system_score_gemma":0.00019247872,"threshold_uncertainty_score":0.9996634},"labels":[],"label_agreement":null},{"id":"W2616666354","doi":"10.1016/j.tim.2017.04.010","title":"At the Nexus of Antibiotics and Metals: The Impact of Cu and Zn on Antibiotic Activity and Resistance","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":319,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Antibiotics; Antibiotic resistance; Antimicrobial; Bacteria; Biology; Microbiology; Zinc; In vivo; Biotechnology; Metal; Resistance (ecology); Chemistry; Ecology; Genetics; Organic chemistry","score_opus":0.04820000548031673,"score_gpt":0.3715520490082497,"score_spread":0.32335204352793295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2616666354","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32112113,0.6777454,0.0000015283279,0.00002822161,0.00007178097,0.00021043954,0.0003453005,0.00000182497,0.00047436956],"genre_scores_gemma":[0.32646596,0.6727175,0.00004215034,0.0000057897064,0.000032415817,2.9004354e-7,0.00008041854,0.000023509014,0.00063191727],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99816334,0.00045773535,0.0004683993,0.0005749672,0.000042175427,0.00029340552],"domain_scores_gemma":[0.99788666,0.00020741804,0.00084744685,0.0009862402,0.00003506559,0.000037178805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005226101,0.00041974694,0.0013374184,0.0001171332,0.00012051809,0.00002324714,0.0004121548,0.0005112868,0.000008779662],"category_scores_gemma":[0.00014381249,0.00022103009,0.00023715947,0.00010395312,0.0019078508,0.0000044168733,0.00045064624,0.00026108287,7.23832e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009211435,0.0003167829,0.00704671,0.007476519,0.0021165134,0.00002399938,0.00019067612,0.0000023889008,0.34827986,0.00034474442,0.0023201036,0.6309606],"study_design_scores_gemma":[0.004198804,0.0043902113,0.16438423,0.015669543,0.003494217,0.0016578853,0.00014432395,0.000012276677,0.0498419,0.00023898896,0.7526612,0.0033063986],"about_ca_topic_score_codex":0.00007418561,"about_ca_topic_score_gemma":0.00050142506,"teacher_disagreement_score":0.7503411,"about_ca_system_score_codex":0.000030690997,"about_ca_system_score_gemma":0.00007114337,"threshold_uncertainty_score":0.9013346},"labels":[],"label_agreement":null},{"id":"W2620498574","doi":"10.1016/j.tim.2017.05.003","title":"The Hsp90 Chaperone Network Modulates Candida Virulence Traits","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Biology; Virulence; Hsp90; Candida albicans; Chaperone (clinical); Genetic screen; Antifungal drug; Function (biology); Cell biology; Corpus albicans; Genetics; Morphogenesis; Protein folding; Computational biology; Gene; Phenotype; Heat shock protein","score_opus":0.06358840856745243,"score_gpt":0.38129351948201423,"score_spread":0.3177051109145618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2620498574","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00027396536,0.9974346,0.0000114243285,0.00008904967,0.00032329763,0.00044058115,0.00014740514,0.000012186346,0.0012674456],"genre_scores_gemma":[0.00062916236,0.99014515,0.00009393013,0.000036116857,0.0006678069,0.00027178592,0.0008550551,0.000072764735,0.0072282157],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99663067,0.00065910973,0.0006380904,0.00089213665,0.00007020821,0.0011097639],"domain_scores_gemma":[0.9982802,0.00009551864,0.00027655275,0.001194733,0.000049750175,0.00010322675],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008554519,0.00052306656,0.0011497162,0.00015615537,0.00042020922,0.00006747399,0.0017044129,0.0010557633,0.00007255374],"category_scores_gemma":[0.0001667198,0.00035063594,0.00036933174,0.00021525194,0.000590802,0.0000030553542,0.00068475446,0.00073456194,0.000087158274],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022555923,0.000023140161,0.00000624334,0.00029607158,0.00012533569,0.000016635579,0.0000073458004,0.000007497643,0.0032119837,0.000031913936,0.0040537724,0.9921975],"study_design_scores_gemma":[0.00021895766,0.00016846074,0.000019585657,0.0007275383,0.000039745846,0.00014974551,0.0000017584456,0.0000025708375,0.00018391288,0.000016278025,0.9981062,0.00036523535],"about_ca_topic_score_codex":0.00007911267,"about_ca_topic_score_gemma":0.0012426872,"teacher_disagreement_score":0.9940524,"about_ca_system_score_codex":0.000082104016,"about_ca_system_score_gemma":0.00032498146,"threshold_uncertainty_score":0.99989456},"labels":[],"label_agreement":null},{"id":"W2747926456","doi":"10.1016/j.tim.2017.07.008","title":"Women and Their Microbes: The Unexpected Friendship","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":253,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute; McMaster University","funders":"","keywords":"Microbiome; Biology; Dysbiosis; Reproductive health; Physiology; Bacterial vaginosis; Infertility; Pregnancy; Immunology; Bioinformatics; Medicine; Genetics; Environmental health; Microbiology; Population","score_opus":0.10710560792167184,"score_gpt":0.37582576057808387,"score_spread":0.268720152656412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2747926456","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00080258056,0.98833895,0.00000213284,0.00026233384,0.0003550346,0.00047509212,0.00007923482,0.00006255384,0.009622108],"genre_scores_gemma":[0.00081770594,0.99236387,0.000042888758,0.00011785027,0.00015810093,0.00028366226,0.00041509894,0.000053872267,0.005746934],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99803877,0.00030475477,0.00054279435,0.0005621021,0.000024663506,0.00052693434],"domain_scores_gemma":[0.9982069,0.00021475747,0.00035941863,0.0011272947,0.000024178105,0.000067456764],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044213838,0.0004946253,0.001743862,0.00081124186,0.00016701271,0.000036623045,0.00040579104,0.00043354035,0.00043107272],"category_scores_gemma":[0.000057124766,0.00027415642,0.00026008752,0.00034511113,0.00043020517,0.000034765915,0.00031507434,0.0008395213,0.00009644175],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018859902,0.0003734155,0.000046721863,0.0016858196,0.0004404485,0.000060496102,0.00048458722,4.4368722e-8,0.000037222402,0.00010728386,0.0018893229,0.99485576],"study_design_scores_gemma":[0.00047716405,0.00046115933,0.00014022045,0.0014833153,0.00023776614,0.0016428904,0.00008234912,2.2703811e-7,0.0000019786771,0.00003693887,0.99519897,0.00023704165],"about_ca_topic_score_codex":0.00003084101,"about_ca_topic_score_gemma":0.00005873701,"teacher_disagreement_score":0.9946187,"about_ca_system_score_codex":0.00032356134,"about_ca_system_score_gemma":0.00008652825,"threshold_uncertainty_score":0.99997103},"labels":[],"label_agreement":null},{"id":"W2768372279","doi":"10.1016/j.tim.2017.11.005","title":"The Search for ‘Evolution-Proof’ Antibiotics","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Wellcome Trust; Wellcome","keywords":"Biology; Antibiotics; Proof of concept; Computational biology; Microbiology; Computer science","score_opus":0.06547992372367603,"score_gpt":0.40117452392261693,"score_spread":0.33569460019894093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2768372279","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000018457786,0.99643576,0.0010783006,0.000074171745,0.00073950284,0.00037772636,0.0004091271,0.000007262166,0.00085966446],"genre_scores_gemma":[0.00023082166,0.9823642,0.00038396526,0.000025065663,0.0003235631,0.000020602674,0.0028707148,0.00004951512,0.013731562],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99814457,0.00021186472,0.00048907223,0.0005697093,0.00003438011,0.000550414],"domain_scores_gemma":[0.9985858,0.000070391034,0.00024393167,0.0009750164,0.00007495623,0.000049887774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005415665,0.00033666068,0.00069223973,0.00015979362,0.00032072575,0.000039245617,0.00090616994,0.0007974908,0.000009559195],"category_scores_gemma":[0.000084401116,0.0002387524,0.00044853808,0.00010800585,0.0004364685,0.0000011444733,0.0002891231,0.00028339255,0.00002185591],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023340886,0.000047252066,0.000027515356,0.00060060836,0.00015038255,0.0000015814995,0.0000057172956,0.000014360129,0.000604413,0.0009649262,0.010798635,0.9867613],"study_design_scores_gemma":[0.00027033858,0.00014717875,0.000015468866,0.00022813218,0.00007913586,0.00007123322,0.000005487115,0.000023470153,0.00006187634,0.000033804365,0.9987909,0.0002729543],"about_ca_topic_score_codex":0.000009295497,"about_ca_topic_score_gemma":0.00047830693,"teacher_disagreement_score":0.9879923,"about_ca_system_score_codex":0.000073221294,"about_ca_system_score_gemma":0.00029395742,"threshold_uncertainty_score":0.973604},"labels":[],"label_agreement":null},{"id":"W2770731797","doi":"10.1016/j.tim.2017.10.007","title":"Impact of HIV-1 Envelope Conformation on ADCC Responses","year":2017,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":92,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research; amfAR, The Foundation for AIDS Research","keywords":"Biology; Envelope (radar); Human immunodeficiency virus (HIV); Antibody-dependent cell-mediated cytotoxicity; Virology; Computational biology; Genetics; Telecommunications; Computer science","score_opus":0.11635153792896683,"score_gpt":0.4332563002567856,"score_spread":0.3169047623278187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2770731797","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00097433786,0.98840874,8.98046e-7,0.000019872474,0.00029452526,0.00037559622,0.005019874,0.000026565189,0.00487959],"genre_scores_gemma":[0.003107939,0.96997845,0.00001877707,0.000006057585,0.00002194391,0.000088034256,0.0149359545,0.000031373078,0.011811442],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969756,0.0010056495,0.00086595456,0.0004645247,0.000020916104,0.00066737575],"domain_scores_gemma":[0.9978292,0.00049925386,0.0007058377,0.0008778818,0.00005376735,0.00003408131],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000441707,0.00053248316,0.0022111712,0.0014619281,0.00012193837,0.000009574574,0.000689029,0.0010395542,0.0025296593],"category_scores_gemma":[0.00017458819,0.0003549529,0.00074949366,0.00019981382,0.00053929293,0.000056790635,0.00016517127,0.0007596533,0.0057432237],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038039935,0.00025998504,0.00022560343,0.00047555563,0.00089455897,0.00003208762,0.00009311069,3.714549e-7,0.0004282695,0.00004371357,0.014864647,0.9823017],"study_design_scores_gemma":[0.0013716368,0.0010485562,0.001220229,0.0017590898,0.00013873511,0.00030943492,0.000004834034,2.2202425e-8,0.00009078118,0.000003633142,0.99377304,0.00028003045],"about_ca_topic_score_codex":0.000119579214,"about_ca_topic_score_gemma":0.000050606584,"teacher_disagreement_score":0.9820217,"about_ca_system_score_codex":0.0003289362,"about_ca_system_score_gemma":0.00048480593,"threshold_uncertainty_score":0.99989027},"labels":[],"label_agreement":null},{"id":"W2785288447","doi":"10.1016/j.tim.2017.12.008","title":"Evolutionary Transition of GAL Regulatory Circuit from Generalist to Specialist Function in Ascomycetes","year":2018,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Gene; Genetics; Clade; Serine; Fungal protein; Transcription factor; Phylogenetics; Peptide sequence; Phosphorylation","score_opus":0.04231362091460298,"score_gpt":0.31645958885672515,"score_spread":0.27414596794212215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2785288447","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.022529084,0.9747308,0.00005392345,0.000028875686,0.00050607143,0.00027154948,0.0012742674,0.0000065233326,0.0005989242],"genre_scores_gemma":[0.018020956,0.96159685,0.00045543682,0.00010649686,0.0018907619,0.00011338748,0.016728016,0.000079929225,0.0010081644],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977171,0.00041945127,0.00067493774,0.00073215156,0.00007682443,0.00037953642],"domain_scores_gemma":[0.99920356,0.000026179476,0.00014807661,0.00048431903,0.000069523856,0.00006836345],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024205958,0.00032772773,0.00084893487,0.00059161853,0.000029799281,0.0000077172035,0.00036188762,0.0007443767,0.0002979764],"category_scores_gemma":[0.000023748544,0.00031652488,0.00027989285,0.0004558721,0.00028174688,0.0000026732375,0.00014929035,0.0002537081,0.000044390334],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039277706,0.0003874226,0.0003371048,0.0014166018,0.00028568128,0.000019172343,0.0001296049,0.00005144342,0.51518553,0.00011709344,0.021951457,0.45972613],"study_design_scores_gemma":[0.0004998929,0.00052572764,0.001217051,0.0009962718,0.000079944206,0.00003159236,0.000010769131,0.0000018851965,0.0032297934,0.00008241963,0.9928938,0.000430809],"about_ca_topic_score_codex":0.00019546768,"about_ca_topic_score_gemma":0.0009163996,"teacher_disagreement_score":0.9709424,"about_ca_system_score_codex":0.00011233806,"about_ca_system_score_gemma":0.00017007359,"threshold_uncertainty_score":0.99992865},"labels":[],"label_agreement":null},{"id":"W2788233869","doi":"10.1016/j.tim.2018.01.004","title":"The Archaellum: An Update on the Unique Archaeal Motility Structure","year":2018,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"European Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Motility; Archaea; Computational biology; Evolutionary biology; Genetics; Bacteria","score_opus":0.029188754541019886,"score_gpt":0.3245198453146899,"score_spread":0.29533109077367004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2788233869","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0066113924,0.9900484,0.00007201704,0.00029754327,0.00072280044,0.00055807666,0.0010806144,0.000022923585,0.00058620813],"genre_scores_gemma":[0.008602502,0.9879776,0.00007177587,0.00039454637,0.00035513507,0.000084763975,0.001866905,0.000058250745,0.00058849354],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99731684,0.00078330387,0.00046673417,0.00080109085,0.000051657244,0.00058036676],"domain_scores_gemma":[0.99823797,0.000092266004,0.00026247028,0.0012889081,0.00004732544,0.00007108647],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00062864606,0.0004921699,0.0006667281,0.000101619466,0.00020783597,0.000025580259,0.0013699,0.000717395,0.00010269113],"category_scores_gemma":[0.000072249415,0.00024719746,0.00027230306,0.00020327333,0.0006766737,0.0000017296487,0.00040805555,0.000615311,0.000021560694],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099173456,0.000106574225,9.926923e-7,0.0004565154,0.00020765114,0.000010125882,0.000080902326,8.6614665e-7,0.026813295,0.0031092495,0.0022253233,0.9668893],"study_design_scores_gemma":[0.00010574176,0.00036434576,8.7636903e-7,0.00024192035,0.000055642835,0.00014569578,0.000013754558,0.0000017535365,0.013917233,0.0012777805,0.9836303,0.00024494965],"about_ca_topic_score_codex":0.00001973271,"about_ca_topic_score_gemma":0.00097041676,"teacher_disagreement_score":0.98140496,"about_ca_system_score_codex":0.000037082904,"about_ca_system_score_gemma":0.0001763846,"threshold_uncertainty_score":0.99999803},"labels":[],"label_agreement":null},{"id":"W2887449055","doi":"10.1016/j.tim.2018.07.002","title":"Direct In Vivo Microbial Transcriptomics During Infection","year":2018,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; Genome Canada","keywords":"Biology; In vivo; Transcriptome; Antimicrobial; Computational biology; Omics; Microbiology; Bioinformatics; Gene; Gene expression; Biotechnology; Genetics","score_opus":0.011419398977278634,"score_gpt":0.2601756470453858,"score_spread":0.24875624806810717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2887449055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9732699,0.0005926773,0.000007637722,0.020862948,0.0019148878,0.00029339944,0.00061955967,0.000040019837,0.0023990178],"genre_scores_gemma":[0.525416,0.0035821805,0.0009305328,0.3840388,0.019184511,0.0002139681,0.021332404,0.0006553082,0.044646278],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968451,0.00034393,0.0006824743,0.00109855,0.000037993057,0.0009919265],"domain_scores_gemma":[0.99912745,0.000014544272,0.00020378173,0.0005621095,0.000047739406,0.000044350443],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00024686306,0.0005551944,0.00069934764,0.0008694756,0.00007549919,0.000022365759,0.0003663718,0.0026672434,0.000365335],"category_scores_gemma":[0.00001629897,0.00059874845,0.00024791833,0.00035202075,0.00026642208,0.000004692107,0.00013390095,0.0012444388,0.00004787169],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088222485,0.00004356089,0.0012716361,0.000077876946,0.000029422352,0.00004543755,0.00005973014,0.000002906564,0.61359125,3.4212397e-7,0.38467583,0.00011375459],"study_design_scores_gemma":[0.0013744126,0.00022308457,0.0026147438,0.00008198884,0.00002092068,0.00025487144,0.0000030431154,5.441543e-7,0.18321145,0.0000032490113,0.81166047,0.0005512088],"about_ca_topic_score_codex":0.00051858666,"about_ca_topic_score_gemma":0.0067760204,"teacher_disagreement_score":0.44785383,"about_ca_system_score_codex":0.00020854943,"about_ca_system_score_gemma":0.00012611087,"threshold_uncertainty_score":0.99964637},"labels":[],"label_agreement":null},{"id":"W2898147830","doi":"10.1016/j.tim.2018.09.008","title":"The Human Microbiome and Child Growth – First 1000 Days and Beyond","year":2018,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Birth, Development, and Health","field":"Medicine","cited_by":795,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Centre for Disease Control; University of British Columbia","funders":"Medical Research Council; Wellcome Trust","keywords":"Biology; Microbiome; Dysbiosis; Human microbiome; Ecological succession; Immune system; Endocrine system; Ecology; Immunology; Genetics; Endocrinology","score_opus":0.033058322459859284,"score_gpt":0.33424478375250927,"score_spread":0.30118646129265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898147830","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00037720168,0.98651946,3.331858e-7,0.001040401,0.00032751917,0.0004048345,0.00012660344,0.000033497403,0.011170165],"genre_scores_gemma":[0.00012837996,0.99712807,0.0001548333,0.0005539514,0.00028101387,0.000038633607,0.00088939443,0.000054795575,0.0007709544],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977023,0.00017372741,0.0007572728,0.00070872967,0.000036220586,0.0006217427],"domain_scores_gemma":[0.9989807,0.00014311082,0.00029182134,0.0004083393,0.000039991977,0.0001360614],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00055910426,0.0004940854,0.0016381211,0.0005477342,0.0004856896,0.00002888132,0.00023237296,0.0006945561,0.000120094366],"category_scores_gemma":[0.000017291866,0.00030848072,0.00013678946,0.00035951778,0.0008837465,0.000022535916,0.00022775943,0.0007253621,0.000047847214],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008015728,0.0003168008,0.0015662417,0.031426672,0.0009060306,0.00012183029,0.0016446364,1.4473798e-9,0.0002567362,0.029766679,0.0965171,0.8373971],"study_design_scores_gemma":[0.0008290457,0.00023273527,0.0007153613,0.0033029187,0.00023701934,0.002059885,0.000015711856,3.061596e-8,0.000007804045,0.0002680713,0.9920258,0.00030560422],"about_ca_topic_score_codex":0.00005244477,"about_ca_topic_score_gemma":0.00093428884,"teacher_disagreement_score":0.8955087,"about_ca_system_score_codex":0.00013387443,"about_ca_system_score_gemma":0.00013906411,"threshold_uncertainty_score":0.9999367},"labels":[],"label_agreement":null},{"id":"W2898232251","doi":"10.1016/j.tim.2018.10.001","title":"Evolution-proof Antibiotics: Response to Uecker","year":2018,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Mutation rate; Population; Mutation; Host (biology); Argument (complex analysis); Resistance (ecology); Antibiotic resistance; Genetics; Resistance mutation; Antibiotics; Demography; Ecology; Gene; RNA","score_opus":0.009568613343359202,"score_gpt":0.27120445010294597,"score_spread":0.2616358367595868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898232251","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42365682,0.002495538,0.005267678,0.5525395,0.0059288023,0.0010495587,0.002745881,0.00013375965,0.0061824378],"genre_scores_gemma":[0.15583293,0.00007603416,0.006560836,0.6782221,0.007690902,0.000022903172,0.014164467,0.0002652809,0.13716455],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99722147,0.00047307363,0.00047969125,0.0010042482,0.00007278161,0.0007487276],"domain_scores_gemma":[0.99868566,0.000030442714,0.00014309955,0.0009356487,0.00012957623,0.00007558937],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00041297087,0.00044556533,0.00043276654,0.00062241417,0.000065673725,0.000017613736,0.0005950531,0.0019515214,0.00032179296],"category_scores_gemma":[0.00012865657,0.00045575635,0.00018614127,0.00035273097,0.00032750648,0.0000015273888,0.00035206333,0.0006652601,0.00036947336],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002623053,0.00002822198,0.00033476553,0.000010692022,0.000038107006,0.000027482656,0.000020770662,0.000045403056,0.2733892,0.0000046136515,0.72561467,0.0002237764],"study_design_scores_gemma":[0.00056753994,0.0006835306,0.0015522381,0.000030445713,0.00002243266,0.00013545279,0.000009086954,0.000023499615,0.0074531566,0.000039225786,0.9889304,0.0005529853],"about_ca_topic_score_codex":0.000025803132,"about_ca_topic_score_gemma":0.00035881076,"teacher_disagreement_score":0.26782387,"about_ca_system_score_codex":0.00013594047,"about_ca_system_score_gemma":0.00015804988,"threshold_uncertainty_score":0.9997894},"labels":[],"label_agreement":null},{"id":"W2909341006","doi":"10.1016/j.tim.2018.12.004","title":"Ménage à trois: Virus, Host, and Microbiota in Experimental Infection Models","year":2019,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Université de Genève; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; M.S.I. Foundation","keywords":"Biology; Commensalism; Immune system; Gut flora; Host (biology); Virus; Innate immune system; Virology; Microbiology; Immunology; Bacteria; Ecology; Genetics","score_opus":0.05015764152438783,"score_gpt":0.35532306455525514,"score_spread":0.3051654230308673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909341006","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.027056087,0.9713244,0.000007769674,0.000015306194,0.00039319572,0.00049191364,0.00026071785,0.000014580582,0.0004360532],"genre_scores_gemma":[0.0045196353,0.99112236,0.00015890783,0.00014491398,0.00012610023,0.00006934218,0.002662619,0.000081043174,0.0011151008],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970893,0.0003783574,0.0007777875,0.0010813114,0.000025209158,0.0006480188],"domain_scores_gemma":[0.99909586,0.000021518852,0.00027102395,0.0005248333,0.000016773576,0.00006996643],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00026323934,0.0006172852,0.0014663087,0.0007288984,0.00004380282,0.000023529796,0.00027281157,0.0012961134,0.00005971474],"category_scores_gemma":[0.000006835102,0.0005806897,0.0002786072,0.00032850503,0.00016149097,0.00000804858,0.00035093806,0.00055013003,0.000046327546],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000081702885,0.00039859515,0.0001496455,0.002765534,0.00012601077,0.000019889074,0.00015319962,0.000007322903,0.8654369,0.000064821426,0.0036133684,0.12718299],"study_design_scores_gemma":[0.0011494635,0.0003912706,0.00014090823,0.001251019,0.00008244266,0.0004498077,0.000014565255,0.0000032516007,0.0024062512,0.000004552141,0.9933686,0.00073786604],"about_ca_topic_score_codex":0.00041808316,"about_ca_topic_score_gemma":0.001338425,"teacher_disagreement_score":0.9897552,"about_ca_system_score_codex":0.0001662147,"about_ca_system_score_gemma":0.00014874605,"threshold_uncertainty_score":0.99968135},"labels":[],"label_agreement":null},{"id":"W2909391765","doi":"10.1016/j.tim.2018.12.003","title":"RTX Adhesins are Key Bacterial Surface Megaproteins in the Formation of Biofilms","year":2019,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; European Commission","keywords":"Bacterial adhesin; Secretion; Biology; Biofilm; Bacterial outer membrane; Microbiology; Bacteria; Escherichia coli; Cell biology; Biochemistry; Gene; Genetics","score_opus":0.0377231199537211,"score_gpt":0.2969058106788374,"score_spread":0.25918269072511635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909391765","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21375215,0.78396744,0.000007369382,0.0000867912,0.00044384238,0.0005827064,0.0009526583,0.00000722863,0.00019983569],"genre_scores_gemma":[0.040716287,0.9412987,0.00014707781,0.00006443155,0.00021482701,0.000033089942,0.017165428,0.000032576532,0.00032755782],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99840677,0.00033184877,0.00061423756,0.0003587146,0.00003784772,0.0002505925],"domain_scores_gemma":[0.9991071,0.000023500375,0.00045335913,0.00037000995,0.000029334371,0.00001667399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018339104,0.00029515746,0.00079940085,0.00013270197,0.000016720483,0.000010832545,0.0004262848,0.000793975,0.000040277606],"category_scores_gemma":[0.000027785916,0.00019162525,0.0002222443,0.000296744,0.000094060066,0.000005310995,0.000106013926,0.00025297792,0.000010224815],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065712804,0.000058226422,0.000033866003,0.001997212,0.00003152415,0.0000021882229,0.00008092398,0.0000017073321,0.8887903,0.00001957974,0.0005891883,0.10832955],"study_design_scores_gemma":[0.000481893,0.00019294127,0.00013580953,0.0008908989,0.00007476541,0.00009144693,0.000021774858,0.0000020729894,0.038560648,0.0000047514595,0.9591744,0.00036858214],"about_ca_topic_score_codex":0.00001994221,"about_ca_topic_score_gemma":0.000097555516,"teacher_disagreement_score":0.9585852,"about_ca_system_score_codex":0.000030082016,"about_ca_system_score_gemma":0.000044358978,"threshold_uncertainty_score":0.78142506},"labels":[],"label_agreement":null},{"id":"W2914231302","doi":"10.1016/j.tim.2019.01.004","title":"The Role of the Host in Driving Phenotypic Heterogeneity in Salmonella","year":2019,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Phenotype; Salmonella; Virulence; Host (biology); Immune system; Population; Colonization; Evasion (ethics); Microbiology; Gene; Genetics; Bacteria","score_opus":0.04345167364145827,"score_gpt":0.29728755459573747,"score_spread":0.2538358809542792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914231302","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2449007,0.7539545,1.3687958e-8,0.00009420599,0.00031994,0.00025325644,0.000048367987,0.0000070350507,0.0004219552],"genre_scores_gemma":[0.1203881,0.87910944,0.0000041417597,0.000056677953,0.00009034766,0.000045452154,0.000120215474,0.000003695879,0.00018193925],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960669,0.0017112608,0.0010073589,0.0005591336,0.000041828465,0.0006134832],"domain_scores_gemma":[0.9977118,0.0015127241,0.0004750377,0.00025946498,0.000014200953,0.00002681636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009196681,0.000358031,0.0015029443,0.00007938578,0.00005771442,0.000010814672,0.0012079638,0.0006576948,0.00007371639],"category_scores_gemma":[0.000093463284,0.00010316074,0.00042415017,0.0009732815,0.00025359044,0.000020474548,0.0004017503,0.0006671499,0.000033750894],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010047117,0.00006235046,0.06495032,0.000083031926,0.000019535313,0.0000019981217,0.000031726566,0.0000017634441,0.007074468,0.00008685858,0.000038985345,0.92763895],"study_design_scores_gemma":[0.00013697158,0.00007565198,0.14061958,0.0009796896,0.00003577399,0.000041709867,0.000056136912,0.000002713353,0.00006576517,0.00017921219,0.8575118,0.00029500554],"about_ca_topic_score_codex":0.00054688356,"about_ca_topic_score_gemma":0.023744995,"teacher_disagreement_score":0.9273439,"about_ca_system_score_codex":0.00011202372,"about_ca_system_score_gemma":0.000025977468,"threshold_uncertainty_score":0.9940691},"labels":[],"label_agreement":null},{"id":"W2952411272","doi":"10.1016/j.tim.2019.05.007","title":"RNA-Targeted Antiviral Immunity: More Than Just RNA Silencing","year":2019,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":157,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Chinese Academy of Agricultural Sciences; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; American Association of Family and Consumer Sciences","keywords":"Biology; RNA; RNA silencing; Immunity; Trans-acting siRNA; RNA-induced transcriptional silencing; Gene silencing; RNA-induced silencing complex; RNA interference; Virology; Computational biology; Genetics; Immune system; Gene","score_opus":0.12143850840514787,"score_gpt":0.35681471076608096,"score_spread":0.2353762023609331,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2952411272","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.019963337,0.97442603,3.914986e-8,0.000120999364,0.0003797202,0.00033758988,0.0031231141,0.00007525619,0.0015739022],"genre_scores_gemma":[0.002008284,0.9902724,0.000017706065,0.00005486975,0.00023315426,0.000047073117,0.0048870337,0.0000050824674,0.0024743674],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99666595,0.00079041225,0.00066832156,0.0007533091,0.00010563725,0.0010163388],"domain_scores_gemma":[0.99861234,0.00075582124,0.00032200303,0.00019990763,0.00004441619,0.00006548116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000506463,0.000614779,0.002153843,0.00022107105,0.00019348931,0.00004332174,0.0011185722,0.0006861965,0.0004910805],"category_scores_gemma":[0.0000963905,0.00022390332,0.0005342236,0.0011627665,0.00029232158,0.00007984227,0.0007381033,0.0011314215,0.00044629799],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011609907,0.00005719522,0.000021767893,0.0005176255,0.00011276672,0.000038488102,0.00006336393,1.2682803e-7,0.10505863,0.0000047397375,0.003301234,0.89081246],"study_design_scores_gemma":[0.00014459534,0.0002025918,0.0004067782,0.0019544421,0.00011761598,0.000059509897,0.00015302261,0.0000012471128,0.0004901994,0.0000050707868,0.9958444,0.00062048784],"about_ca_topic_score_codex":0.0005658398,"about_ca_topic_score_gemma":0.0013690781,"teacher_disagreement_score":0.9925432,"about_ca_system_score_codex":0.00016204527,"about_ca_system_score_gemma":0.000041776028,"threshold_uncertainty_score":0.91305125},"labels":[],"label_agreement":null},{"id":"W2961956121","doi":"10.1016/j.tim.2019.06.003","title":"Making the Most of Trait-Based Approaches for Microbial Ecology","year":2019,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":101,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Ecology; Trait; Microbial ecology; Evolutionary biology; Bacteria; Genetics; Computer science","score_opus":0.15583049346694108,"score_gpt":0.3414355511134792,"score_spread":0.1856050576465381,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2961956121","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019364902,0.9858053,0.00011409333,0.00038746579,0.0017729426,0.0029744226,0.0022370052,0.000053635733,0.0047186795],"genre_scores_gemma":[0.026661236,0.92974186,0.007274492,0.003985771,0.0006050794,0.0018611209,0.023502374,0.00053836656,0.005829707],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964357,0.0013556471,0.0008933272,0.0006245788,0.000024980582,0.0006657602],"domain_scores_gemma":[0.99707735,0.0014404904,0.0006654884,0.00078398257,0.000008393858,0.000024292824],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00077268045,0.00049764285,0.002033687,0.00027580993,0.00014625875,0.0000062005965,0.0015557666,0.0011546843,0.0036723125],"category_scores_gemma":[0.000049792583,0.00035472694,0.000561715,0.0005568689,0.0012383783,0.000028234032,0.00051038107,0.00086053886,0.00014504632],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017897034,0.00054797763,0.0001281477,0.0035549183,0.00025239048,0.0000038707603,0.00033103485,0.0007146095,0.0027295996,0.0005408004,0.042305194,0.94871247],"study_design_scores_gemma":[0.0005507632,0.0002777924,0.00011264524,0.00029805515,0.00027143693,0.00005853384,0.00001439781,0.00002498269,0.000021743783,0.00008790459,0.9979219,0.000359846],"about_ca_topic_score_codex":0.00008884201,"about_ca_topic_score_gemma":0.0033508637,"teacher_disagreement_score":0.9556167,"about_ca_system_score_codex":0.00021759189,"about_ca_system_score_gemma":0.0001103504,"threshold_uncertainty_score":0.99989045},"labels":[],"label_agreement":null},{"id":"W2969555497","doi":"10.1016/j.tim.2019.07.006","title":"Host–Pathogen Interactions during Female Genital Tract Infections","year":2019,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":98,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Leibniz-Gemeinschaft; Biotechnology and Biological Sciences Research Council; King's University College; Deutsche Forschungsgemeinschaft; European Commission; National Institute for Health and Care Research; Wellcome Trust","keywords":"Biology; Dysbiosis; Microbiology; Pathogen; Population; Trichomonas vaginalis; Commensalism; Immunology; Gut flora; Bacteria; Genetics","score_opus":0.07843401106784748,"score_gpt":0.39355983408982503,"score_spread":0.31512582302197756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969555497","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011321638,0.97729117,0.000005526589,0.00003087802,0.0038320988,0.0008635674,0.000996938,0.00019058853,0.0054676104],"genre_scores_gemma":[0.004347988,0.95310086,0.00003232057,0.000009264448,0.0002253858,0.00048982695,0.0039029256,0.00014229775,0.037749115],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99459296,0.001529192,0.0012283212,0.0014836511,0.00003082808,0.0011350417],"domain_scores_gemma":[0.997382,0.00067516486,0.0004794134,0.0012996359,0.00011930548,0.000044488286],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0005022724,0.0008310613,0.0023663053,0.0035252478,0.0003252802,0.000040294497,0.0006718454,0.0013501733,0.0062149656],"category_scores_gemma":[0.00021360921,0.0007478534,0.0010423376,0.001616683,0.00049588684,0.00022734252,0.00039403353,0.0034176598,0.01210847],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007292863,0.003842145,0.0011477179,0.0030372117,0.0019357076,0.00012681798,0.00041961894,0.000011805784,0.121942505,0.00013584533,0.0021692845,0.86515844],"study_design_scores_gemma":[0.0006683771,0.00027848332,0.00066729117,0.000905785,0.0003976355,0.0071353507,0.000044180557,7.06531e-8,0.00048028852,0.000002993164,0.98875135,0.00066819455],"about_ca_topic_score_codex":0.00014982694,"about_ca_topic_score_gemma":0.00022703959,"teacher_disagreement_score":0.98658204,"about_ca_system_score_codex":0.0007721006,"about_ca_system_score_gemma":0.0003123597,"threshold_uncertainty_score":0.9999463},"labels":[],"label_agreement":null},{"id":"W2995098549","doi":"10.1016/j.tim.2019.11.006","title":"Networks Consolidate the Core Concepts of Evolution by Natural Selection","year":2019,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Social Sciences and Humanities Research Council of Canada","keywords":"Biology; Natural selection; Selection (genetic algorithm); Core (optical fiber); Natural (archaeology); Evolutionary biology; Computational biology; Computer science; Artificial intelligence; Paleontology","score_opus":0.019696866974026863,"score_gpt":0.3387514561573798,"score_spread":0.31905458918335294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995098549","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00027376463,0.99773335,0.0006104427,0.00001342544,0.00063831836,0.00024138408,0.00020800787,0.000007679242,0.0002736481],"genre_scores_gemma":[0.010576217,0.9777035,0.00006913682,0.00006831432,0.00012697997,0.00002566429,0.006675945,0.000032253298,0.004721974],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99840057,0.00030211115,0.00051112444,0.0004384982,0.000032056112,0.00031561486],"domain_scores_gemma":[0.9991461,0.00003893639,0.0003876669,0.0003515125,0.00005231045,0.000023442231],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020266842,0.00030286147,0.0007328417,0.000119061435,0.00003920057,0.000005498176,0.00035093402,0.0007267791,0.00005411697],"category_scores_gemma":[0.000022271428,0.00021772108,0.00027798297,0.00030646805,0.00030820508,0.0000013559077,0.00013159298,0.00039681597,0.000015419542],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001328996,0.00019777822,0.00037525521,0.0016398742,0.0007467639,0.0000016826524,0.000039170474,0.0011544463,0.048075497,0.0008523121,0.17055385,0.77623045],"study_design_scores_gemma":[0.00032969774,0.00015338985,0.000023178345,0.0002475879,0.00014801863,0.000120752906,0.0000068183003,0.00034925825,0.000054652883,0.0000063297957,0.9983005,0.00025981633],"about_ca_topic_score_codex":0.000018415456,"about_ca_topic_score_gemma":0.00017491181,"teacher_disagreement_score":0.8277466,"about_ca_system_score_codex":0.000067955865,"about_ca_system_score_gemma":0.00010237322,"threshold_uncertainty_score":0.8878408},"labels":[],"label_agreement":null},{"id":"W3005809379","doi":"10.1016/j.tim.2020.01.003","title":"Contact-Dependent Interbacterial Antagonism Mediated by Protein Secretion Machines","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":154,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Antagonism; Biology; Cell envelope; Effector; Secretion; Bacteria; Bacteriocin; Microbiology; Competition (biology); Bacterial protein; Cell biology; Biochemistry; Genetics; Escherichia coli; Ecology; Receptor; Gene","score_opus":0.020412129603149226,"score_gpt":0.320021640368541,"score_spread":0.2996095107653918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3005809379","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0032542737,0.99152964,0.000014331483,0.00016859351,0.0005590926,0.0007115064,0.0035207022,0.000036340753,0.00020553387],"genre_scores_gemma":[0.00107854,0.9618631,0.00005438016,0.00006316526,0.0005020147,0.00031804596,0.03514989,0.000086847256,0.0008839969],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967547,0.00077928987,0.00077995413,0.0010027476,0.00006923566,0.00061405456],"domain_scores_gemma":[0.99903065,0.000034476903,0.0003521181,0.00042449703,0.000045477813,0.000112802656],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024460623,0.0006652646,0.0016681238,0.0002466424,0.000056627392,0.000040306917,0.00062048814,0.00090874184,0.00022737704],"category_scores_gemma":[0.00015899265,0.0005480563,0.00034438094,0.00023495057,0.00017856255,0.000004604133,0.00074013986,0.0005695865,0.00008977027],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013550674,0.000057732006,0.000006478625,0.000732805,0.0002865184,0.000031212545,0.00002065397,1.2928453e-8,0.75582653,0.0000034223626,0.0046053855,0.23829377],"study_design_scores_gemma":[0.00081539596,0.00055770675,0.0000048061015,0.0005277001,0.000075664975,0.000091763315,0.0000054597845,5.618789e-7,0.0072080744,0.0000019905171,0.99022,0.00049085525],"about_ca_topic_score_codex":0.000051975014,"about_ca_topic_score_gemma":0.0001457802,"teacher_disagreement_score":0.98561466,"about_ca_system_score_codex":0.0001316914,"about_ca_system_score_gemma":0.00016693817,"threshold_uncertainty_score":0.9996971},"labels":[],"label_agreement":null},{"id":"W3006294138","doi":"10.1016/j.tim.2020.01.006","title":"The Long-Term Relationship between Microbial Metabolism and Greenhouse Gases","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":151,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Microbial metabolism; Term (time); Greenhouse gas; Ecology; Bacteria; Genetics","score_opus":0.05462286897025121,"score_gpt":0.30256106595712895,"score_spread":0.24793819698687775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006294138","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00040419516,0.99821603,0.000023393733,0.00015108242,0.0006169018,0.00016940365,0.00013208426,0.00017021752,0.000116700976],"genre_scores_gemma":[0.0018037857,0.99620575,0.00007670723,0.000014137145,0.00048246517,0.000023043476,0.00080601627,0.000054260014,0.00053385954],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985916,0.00019785862,0.00052530546,0.00035974992,0.0000251566,0.00030032394],"domain_scores_gemma":[0.9993223,0.0002509025,0.000108779226,0.00024894442,0.000011927614,0.000057142886],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018272107,0.00035771108,0.000876447,0.00028158785,0.000102355465,0.000040007366,0.00024527643,0.00040904316,0.000027583168],"category_scores_gemma":[0.000046650606,0.0002540403,0.00016895923,0.00042769974,0.00019192221,0.00004739802,0.00007955938,0.00062225515,0.00008146434],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000002918144,0.000006643215,0.00069328304,0.00036506046,0.000100333964,0.000009262743,0.00003611629,0.0000020148568,0.000018223418,0.000713044,0.0031268983,0.9949262],"study_design_scores_gemma":[0.0001428513,0.0000143552725,0.0032405022,0.00034613465,0.0002643256,0.00012436081,0.0000019614604,2.3616967e-7,0.000007095964,0.000012285353,0.99559337,0.00025250623],"about_ca_topic_score_codex":0.000005951016,"about_ca_topic_score_gemma":0.00009971629,"teacher_disagreement_score":0.99467367,"about_ca_system_score_codex":0.000072821356,"about_ca_system_score_gemma":0.000025472167,"threshold_uncertainty_score":0.9999912},"labels":[],"label_agreement":null},{"id":"W3012530969","doi":"10.1016/j.tim.2020.02.017","title":"Phagocytosis in a Shape-shifting Bacterium","year":2020,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Phagocytosis; Biology; Realm; Bacteria; Cell biology; Microbiology; Genetics","score_opus":0.025533040739872278,"score_gpt":0.25044705593312844,"score_spread":0.22491401519325616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012530969","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.38599798,0.0001276684,0.0000023547607,0.5956705,0.0010396881,0.0003199692,0.00029762712,0.0001135219,0.016430698],"genre_scores_gemma":[0.1730287,0.00004333628,0.0003721514,0.8200925,0.00053957955,0.000050722774,0.004176987,0.000069155634,0.001626893],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966139,0.0010934791,0.0005895932,0.00078687177,0.00003610034,0.0008800541],"domain_scores_gemma":[0.9989814,0.0002862636,0.00021252639,0.00047522908,0.0000036031283,0.000040932515],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.00022111242,0.0004510771,0.00084152946,0.000322636,0.00008675671,0.000011475696,0.0010677405,0.001472716,0.044090897],"category_scores_gemma":[0.000039676743,0.000469505,0.00014661007,0.0006531281,0.0005570587,0.000068468275,0.0009981605,0.004041186,0.0018131799],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047649726,0.000059939917,0.00548989,0.000021301961,0.000019030931,0.00043313229,0.0005724777,0.000017529528,0.10522956,0.0000015428801,0.8850847,0.0030232768],"study_design_scores_gemma":[0.00065313186,0.00016692588,0.00812201,0.000029461771,0.000016495438,0.00008172386,0.000016554724,0.00003516798,0.00040497855,0.00018322362,0.989726,0.0005643253],"about_ca_topic_score_codex":0.00072055927,"about_ca_topic_score_gemma":0.0061496915,"teacher_disagreement_score":0.224422,"about_ca_system_score_codex":0.00033400775,"about_ca_system_score_gemma":0.000019561978,"threshold_uncertainty_score":0.9998236},"labels":[],"label_agreement":null},{"id":"W3013326098","doi":"10.1016/j.tim.2020.02.016","title":"A Gaseous Milieu: Extending the Boundaries of the Rhizosphere","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":64,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhizosphere; Biology; Ecology; Computational biology; Bacteria; Paleontology","score_opus":0.0307287662667936,"score_gpt":0.2741813183213685,"score_spread":0.2434525520545749,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3013326098","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008031834,0.9900948,4.382622e-8,0.00044369683,0.00042076717,0.00018348497,0.00029292432,0.000022970236,0.0005094804],"genre_scores_gemma":[0.0025054626,0.9963868,0.00001663873,0.00017844743,0.00016540627,0.000030753592,0.00022391933,0.0000034539523,0.0004891167],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983317,0.000464166,0.0004846998,0.00035044612,0.000054787888,0.00031417247],"domain_scores_gemma":[0.99913,0.00035580885,0.00031656455,0.00014866173,0.00001827695,0.00003067711],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019467634,0.0003009083,0.0009602656,0.0000171229,0.00018558718,0.00003698185,0.0009578742,0.0003339292,0.00036668347],"category_scores_gemma":[0.000056618002,0.00007268616,0.0006064326,0.000907405,0.00060695823,0.000012758618,0.00031320442,0.0005017921,0.000019677176],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000061025903,0.000019822752,0.000057272675,0.00012400263,0.00004035223,0.0000062788004,0.000047220987,1.4455479e-7,0.00042084124,0.00022354358,0.0007688132,0.9982856],"study_design_scores_gemma":[0.000046177414,0.00006208737,0.00015847792,0.00040723724,0.000110212226,0.00014393765,0.000049216003,0.000003862607,0.000013273533,0.000060479324,0.9987845,0.00016054098],"about_ca_topic_score_codex":0.00028407027,"about_ca_topic_score_gemma":0.0046403348,"teacher_disagreement_score":0.9981251,"about_ca_system_score_codex":0.00005760282,"about_ca_system_score_gemma":0.00004845584,"threshold_uncertainty_score":0.40149269},"labels":[],"label_agreement":null},{"id":"W3014980518","doi":"10.1016/j.tim.2020.03.001","title":"Evolution of Lantibiotic Salivaricins: New Weapons to Fight Infectious Diseases","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Lantibiotics; Biology; Microbiology; Antibiotic resistance; Antimicrobial; Antimicrobial peptides; Lipid II; Antibiotics; Bacteriocin; Lanthionine; Computational biology; Bacteria; Genetics; Bacterial cell structure","score_opus":0.028627977575591212,"score_gpt":0.2836180297606953,"score_spread":0.25499005218510407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014980518","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005227841,0.9969369,0.0000050337644,0.00024223202,0.00031934612,0.0002902784,0.0010511721,0.00005909407,0.0005731445],"genre_scores_gemma":[0.010170049,0.9872101,0.000050743263,0.00011746105,0.0003232224,0.000007947243,0.0016309184,0.00000465317,0.00048490497],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998384,0.00019524398,0.00054477324,0.00049175875,0.00003981478,0.00034442137],"domain_scores_gemma":[0.99937385,0.0001381421,0.00023031935,0.00009952756,0.000019927518,0.00013820289],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006693348,0.00032484278,0.0012494286,0.00014250414,0.000041108502,0.000013453453,0.00041021276,0.00038542945,0.0003801136],"category_scores_gemma":[0.000045346846,0.00013083093,0.00034039316,0.001345873,0.000054577074,0.000022244516,0.00020903867,0.00026094896,0.00011496614],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011357979,0.00014233627,0.00022348636,0.00033775493,0.00006601574,0.000009973278,0.000018452487,0.0000012515183,0.0037184195,0.0004183686,0.0046441806,0.9904084],"study_design_scores_gemma":[0.00011252079,0.0005310251,0.0011052298,0.0011218585,0.00018546966,0.000031255004,0.0000061034657,6.797922e-7,0.000013467264,0.00007577549,0.9965283,0.00028828488],"about_ca_topic_score_codex":0.00025885622,"about_ca_topic_score_gemma":0.00049321906,"teacher_disagreement_score":0.9918842,"about_ca_system_score_codex":0.00014451209,"about_ca_system_score_gemma":0.000054562384,"threshold_uncertainty_score":0.53351307},"labels":[],"label_agreement":null},{"id":"W3018269104","doi":"10.1016/j.tim.2020.04.006","title":"Bat Influenza Viruses: Making a Double Agent of MHC Class II","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Michael G. DeGroote Institute for Infectious Disease Research, McMaster University; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Research, Innovation and Science","keywords":"Biology; Virology; Major histocompatibility complex; MHC class II; Immunology; Microbiology; Immune system","score_opus":0.3005835682620504,"score_gpt":0.4940214528938453,"score_spread":0.1934378846317949,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3018269104","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00018686712,0.9925077,0.0000014244622,0.00011132647,0.00025829888,0.0007216008,0.00029245694,0.000063350795,0.0058569564],"genre_scores_gemma":[0.000066328306,0.9969319,0.00034392183,0.0012553033,0.0002034443,0.00019086817,0.00018620158,0.00009290975,0.00072914094],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963026,0.00033382277,0.0015525195,0.00082276436,0.00015283009,0.0008354438],"domain_scores_gemma":[0.99825245,0.00023538234,0.0005713238,0.0007092992,0.00011739658,0.00011412654],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004448156,0.00068655115,0.004298747,0.0013563845,0.000091614296,0.000009631662,0.00053407036,0.000756481,0.00071283226],"category_scores_gemma":[0.00020358231,0.00052557426,0.0007678334,0.0013251965,0.00051462115,0.000040426854,0.0011264848,0.0013741022,0.00025334777],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006214101,0.00027371326,0.00018325714,0.016460503,0.0014669839,0.000367964,0.0008172307,0.0000017974342,0.0010968163,0.0002324704,0.0124662975,0.9660116],"study_design_scores_gemma":[0.002124044,0.0005251702,0.00001559677,0.007374957,0.0005985314,0.00018029593,0.000031145093,8.9562974e-7,0.000072978655,0.0000044636763,0.9887214,0.00035057345],"about_ca_topic_score_codex":0.00006508204,"about_ca_topic_score_gemma":0.00008750052,"teacher_disagreement_score":0.97625506,"about_ca_system_score_codex":0.00056357164,"about_ca_system_score_gemma":0.00045126735,"threshold_uncertainty_score":0.99971956},"labels":[],"label_agreement":null},{"id":"W3021717266","doi":"10.1016/j.tim.2020.03.013","title":"Parasexual and Sexual Reproduction in Arbuscular Mycorrhizal Fungi: Room for Both","year":2020,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Sexual reproduction; Mating; Reproduction; Arbuscular mycorrhizal fungi; Syncytium; Plant reproduction; Evolutionary biology; Ecology; Genetics; Pollination","score_opus":0.02638693472933494,"score_gpt":0.24516696871971624,"score_spread":0.21878003399038132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021717266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99508154,0.0011024897,0.000012344948,0.0022642838,0.00022605796,0.00013967534,0.00094287936,0.0000327841,0.0001979649],"genre_scores_gemma":[0.99493784,0.00018798013,0.00019782258,0.00048094784,0.00036704057,0.000029155328,0.003523041,0.0000014978118,0.00027469482],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99892455,0.00008487056,0.00023340677,0.00047596233,0.00002176543,0.0002594517],"domain_scores_gemma":[0.9993715,0.00046568224,0.000050039944,0.000044998073,0.000012821328,0.000054959248],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001578371,0.0001265451,0.00020916505,0.000038743914,0.000051676216,0.00001567354,0.00010115769,0.00013012128,0.0010331352],"category_scores_gemma":[0.000106213636,0.00006127053,0.00003561621,0.00031070012,0.000009836287,0.00006456651,0.00003783887,0.00016337604,0.00004143841],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002932857,0.00007423963,0.14471571,0.000009618427,0.00000998809,0.000010282001,0.00022706605,0.00004738406,0.79443437,0.00023578414,0.010306782,0.049635466],"study_design_scores_gemma":[0.0011206204,0.003686587,0.22754915,0.0000611517,0.0000543091,0.00051358074,0.0018333808,0.0020557407,0.011977758,0.0008531328,0.7490864,0.0012082296],"about_ca_topic_score_codex":0.00043760065,"about_ca_topic_score_gemma":0.0011213453,"teacher_disagreement_score":0.78245664,"about_ca_system_score_codex":0.000015505537,"about_ca_system_score_gemma":0.0000038203357,"threshold_uncertainty_score":0.9998801},"labels":[],"label_agreement":null},{"id":"W3024052851","doi":"10.1016/j.tim.2020.03.007","title":"The Conformational States of the HIV-1 Envelope Glycoproteins","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":110,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Gilead Sciences","keywords":"Biology; Glycoprotein; Envelope (radar); Human immunodeficiency virus (HIV); Virology; Cell biology; Computational biology; Genetics; Computer science","score_opus":0.030972642362406252,"score_gpt":0.31408735456886977,"score_spread":0.2831147122064635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3024052851","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000032794414,0.99363744,0.0000024238566,0.000641018,0.0003865389,0.00049287296,0.003497918,0.00001679966,0.0012922069],"genre_scores_gemma":[0.00022475842,0.9875692,0.000020592252,0.000041999887,0.000022774533,0.00017009582,0.006308628,0.000020943542,0.005621005],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99742424,0.00089445914,0.0008059638,0.0003147974,0.000027413582,0.0005330981],"domain_scores_gemma":[0.9984586,0.0005879014,0.00040873524,0.00047794046,0.00004506802,0.00002173074],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002924182,0.0003564448,0.0011159619,0.00018024127,0.00022135892,0.000011970674,0.0009823068,0.00046515366,0.00095046056],"category_scores_gemma":[0.00007845523,0.00016496345,0.00042380628,0.00046182604,0.00093752483,0.0000240218,0.00039092242,0.0008477995,0.002709393],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048227586,0.00006764815,0.000032951782,0.00040168807,0.0006162697,0.000007173849,0.0001878478,4.74344e-7,0.00018801095,0.00052123494,0.024630142,0.9732983],"study_design_scores_gemma":[0.000588354,0.00010075191,0.000046926598,0.00047528723,0.00009385208,0.00018459796,0.00003221435,8.918566e-8,0.00014438092,0.00002252792,0.99816567,0.00014536806],"about_ca_topic_score_codex":0.00004566757,"about_ca_topic_score_gemma":0.00014937398,"teacher_disagreement_score":0.9735355,"about_ca_system_score_codex":0.00013074903,"about_ca_system_score_gemma":0.000396193,"threshold_uncertainty_score":0.9999628},"labels":[],"label_agreement":null},{"id":"W3040214817","doi":"10.1016/j.tim.2020.05.021","title":"Challenges of Studying the Human Virome – Relevant Emerging Technologies","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":84,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"European Research Council; Deutsche Forschungsgemeinschaft","keywords":"Human virome; Biology; Metagenomics; Computational biology; Bacteriophage; Microbiome; Human microbiome; Data science; Bioinformatics; Genetics; Computer science; Gene","score_opus":0.07802438338276851,"score_gpt":0.3497821044542224,"score_spread":0.2717577210714539,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3040214817","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00040894686,0.9956313,0.0000012023528,0.0005994851,0.00022153078,0.00020009383,0.00004851143,0.00006691556,0.0028220317],"genre_scores_gemma":[0.0037552214,0.99571335,0.00010308271,0.000015109885,0.00002518004,0.00004459714,0.000038570917,0.000028077146,0.00027677979],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983829,0.00019231126,0.00059952406,0.00049241155,0.00003046159,0.00030239226],"domain_scores_gemma":[0.9990687,0.00010121599,0.00037573787,0.0004357484,0.0000030610317,0.000015551703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018230453,0.0003099034,0.0010425819,0.00018193833,0.00009448405,0.000008799431,0.0007767606,0.0002972157,0.0006876076],"category_scores_gemma":[0.000021950174,0.00019938106,0.00026828353,0.0004251783,0.0004125156,0.000044900535,0.00081895734,0.00065483054,0.00016252045],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000010131927,0.00004386721,0.0000029137686,0.00024698,0.000049388203,0.000011832535,0.0002549009,7.286347e-7,0.027145583,0.00007129964,0.00036584845,0.97180563],"study_design_scores_gemma":[0.00006845633,0.00006594465,0.0001080756,0.00075674907,0.000098940014,0.000110834335,0.00025178937,2.1436071e-7,0.00007386017,0.000022685306,0.9982518,0.00019067299],"about_ca_topic_score_codex":0.000091376874,"about_ca_topic_score_gemma":0.0005546723,"teacher_disagreement_score":0.99788594,"about_ca_system_score_codex":0.0001512071,"about_ca_system_score_gemma":0.0000072927096,"threshold_uncertainty_score":0.81305236},"labels":[],"label_agreement":null},{"id":"W3042265014","doi":"10.1016/j.tim.2020.06.006","title":"Missing Microbes in Bees: How Systematic Depletion of Key Symbionts Erodes Immunity","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":130,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Canadian Science Centre for Human and Animal Health","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Immunity; Stressor; Host (biology); Disease; Ecology; Honey bee; Human health; Insect; Antibiotics; Honey Bees; Zoology; Immune system; Microbiology; Immunology; Environmental health","score_opus":0.08480665203773022,"score_gpt":0.32785730876495744,"score_spread":0.24305065672722723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042265014","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01687232,0.98204374,4.7509315e-7,0.00019368241,0.00010779566,0.00043294684,0.00018471412,0.000020833048,0.00014350787],"genre_scores_gemma":[0.02984685,0.9685713,0.00008206545,0.000018405417,0.00009076431,0.000052462907,0.0011989702,0.0000044408416,0.0001347621],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966107,0.0016575016,0.00079898594,0.0004126613,0.000067835565,0.0004522872],"domain_scores_gemma":[0.9985273,0.0008673164,0.00038973484,0.00011582179,0.000046315214,0.000053525877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072100596,0.00035000977,0.002138933,0.00020772305,0.00006307236,0.000036807272,0.0006160189,0.0005584939,0.00026960517],"category_scores_gemma":[0.00021188543,0.00013915378,0.00032656267,0.0011597339,0.00015250575,0.000043900836,0.00017480597,0.00060661096,0.000028124156],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026203372,0.00020161466,0.0003775271,0.057627127,0.00008255294,0.00004881399,0.00030402758,2.9499455e-7,0.070731595,0.000040678053,0.00019350438,0.87036604],"study_design_scores_gemma":[0.0014046667,0.0020975426,0.0049848645,0.34331235,0.00078442215,0.0010797982,0.0010401515,0.000027030685,0.0016874772,0.00037635159,0.6399494,0.0032559452],"about_ca_topic_score_codex":0.0006277645,"about_ca_topic_score_gemma":0.002785755,"teacher_disagreement_score":0.86711013,"about_ca_system_score_codex":0.00013614648,"about_ca_system_score_gemma":0.00003989936,"threshold_uncertainty_score":0.56745267},"labels":[],"label_agreement":null},{"id":"W3048464602","doi":"10.1016/j.tim.2020.06.009","title":"Development of Microbiome Biobanks – Challenges and Opportunities","year":2020,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Ethics in Clinical Research","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; Agriculture and Agri-Food Canada","funders":"Horizon 2020; European Commission","keywords":"Biobank; Microbiome; Biology; Gut microbiome; Engineering ethics; Computational biology; Data science; Bioinformatics; Engineering; Computer science","score_opus":0.6973219109833081,"score_gpt":0.5173271363781033,"score_spread":0.17999477460520474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048464602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94878006,0.008640269,0.000008760913,0.03452106,0.0000686927,0.00010342553,0.000025844432,0.000031132848,0.007820757],"genre_scores_gemma":[0.9802555,0.0070369663,0.010286356,0.0014372898,0.000042787033,0.00000740394,0.00007060957,0.000016522712,0.0008466059],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988638,0.000070240996,0.00046109577,0.0003077896,0.000060036535,0.00023702606],"domain_scores_gemma":[0.99904245,0.000537255,0.000068373156,0.00015886883,0.00007760228,0.0001154667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078149757,0.00011100794,0.00039554207,0.0002319661,0.000018381603,0.0000022247825,0.00013017908,0.0003312647,0.00021152625],"category_scores_gemma":[0.00033952692,0.000094934556,0.000038245515,0.00011424822,0.0005037423,0.000015397167,0.00021369879,0.0005737284,0.000013501862],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021010045,0.00012312106,0.00043560518,0.0004376922,0.00006528017,0.000050566734,0.0053632124,4.0307757e-8,0.667568,0.004946261,0.00026832413,0.3205318],"study_design_scores_gemma":[0.012146392,0.003936146,0.07227672,0.0014059442,0.00012436941,0.0005266355,0.008797228,0.000026393718,0.3393366,0.0031492244,0.557077,0.0011973345],"about_ca_topic_score_codex":0.0000031650518,"about_ca_topic_score_gemma":0.00010290868,"teacher_disagreement_score":0.5568087,"about_ca_system_score_codex":0.000026805541,"about_ca_system_score_gemma":0.0001700935,"threshold_uncertainty_score":0.38713187},"labels":[],"label_agreement":null},{"id":"W3102881183","doi":"10.1016/j.tim.2020.10.010","title":"Bacterial Adaptation in Structured Environments: Lessons from Darwin’s Finches","year":2020,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Burkholderia cenocepacia; Adaptation (eye); Biofilm; Evolutionary biology; Nexus (standard); Quorum sensing; Burkholderia cepacia complex; Gene regulatory network; Gene; Ecology; Genetics; Bacteria; Burkholderia; Virulence; Neuroscience; Gene expression","score_opus":0.016467336348690173,"score_gpt":0.24976279353174638,"score_spread":0.23329545718305622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3102881183","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.33064446,0.0029630302,0.0023446665,0.6446701,0.004647938,0.0008314307,0.0121167125,0.0000662742,0.0017153596],"genre_scores_gemma":[0.40336353,0.0007145775,0.0051307217,0.31880185,0.0050825616,0.000101780905,0.26215225,0.0001853467,0.0044673546],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981004,0.00027320354,0.0004207366,0.00078381255,0.000047814792,0.00037404234],"domain_scores_gemma":[0.999399,0.000020402002,0.00016454338,0.0003755027,0.000007558845,0.000032985747],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00005020798,0.00034561168,0.0003969406,0.00017934665,0.000025137739,0.000013424639,0.0003508465,0.0013127924,0.0006044339],"category_scores_gemma":[0.000026727821,0.00036996932,0.00011038666,0.00010738926,0.0001594781,0.0000022348745,0.00017918165,0.0007204258,0.000033284243],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010082368,0.000028860033,0.000258901,0.000008885882,0.000063326384,0.00005886597,0.00014362819,0.00025526359,0.66457397,0.0000032465443,0.33001187,0.0044923583],"study_design_scores_gemma":[0.0013533941,0.00014725543,0.004132012,0.000016881,0.000027944028,0.00001425503,0.000037460588,0.00015476432,0.0040434203,0.0001417454,0.98944443,0.0004864514],"about_ca_topic_score_codex":0.0001319156,"about_ca_topic_score_gemma":0.0019841313,"teacher_disagreement_score":0.66053057,"about_ca_system_score_codex":0.00007850908,"about_ca_system_score_gemma":0.00006289868,"threshold_uncertainty_score":0.9999837},"labels":[],"label_agreement":null},{"id":"W3120331343","doi":"10.1016/j.tim.2020.12.003","title":"Noncoding RNAs: Regulatory Molecules of Host–Microbiome Crosstalk","year":2021,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Circular RNAs in diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Microbiome; microRNA; Computational biology; Crosstalk; Non-coding RNA; Phenotype; Bioinformatics; Genetics; Gene","score_opus":0.02796375922904256,"score_gpt":0.33751695923984504,"score_spread":0.3095532000108025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3120331343","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0029147353,0.99471194,0.000019899175,0.000006787013,0.000514794,0.00020904225,0.0008762673,0.000017396944,0.00072914443],"genre_scores_gemma":[0.0014465632,0.9901431,0.0004166741,0.000047151352,0.00020386137,0.00005537449,0.006451624,0.00012413523,0.0011114661],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99667203,0.00048101597,0.0010791025,0.0011084029,0.0000659925,0.00059342425],"domain_scores_gemma":[0.9979358,0.000049676193,0.0005789139,0.0012503733,0.000097208744,0.00008807271],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028162866,0.0006629123,0.0019986252,0.0006041747,0.00004917413,0.00002254939,0.0007884969,0.0011303672,0.00024710267],"category_scores_gemma":[0.000108257125,0.00065814867,0.0011284126,0.0006132577,0.0005377925,0.0000036279823,0.00067368645,0.00035108085,0.000018905741],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028013985,0.00035247052,0.000060435275,0.004160688,0.0008378038,0.0002010976,0.000033430766,0.0000061750006,0.41399327,0.00014191016,0.005694361,0.57449037],"study_design_scores_gemma":[0.00044361397,0.00009956739,0.000029252882,0.0028452463,0.00029786024,0.0006546489,0.00001659088,1.7407834e-7,0.0139128035,0.0000041063254,0.981043,0.00065314304],"about_ca_topic_score_codex":0.000014227694,"about_ca_topic_score_gemma":0.000045447894,"teacher_disagreement_score":0.97534865,"about_ca_system_score_codex":0.000113279326,"about_ca_system_score_gemma":0.00040038564,"threshold_uncertainty_score":0.999587},"labels":[],"label_agreement":null},{"id":"W3122892082","doi":"10.1016/j.tim.2021.01.002","title":"When PARPs Meet Antiviral Innate Immunity","year":2021,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"PARP inhibition in cancer therapy","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Natural Science Foundation of China","keywords":"Biology; PARP1; Innate immune system; ADP-ribosylation; Poly ADP ribose polymerase; DNA repair; DNA damage; Polymerase; Immunity; DNA; NAD+ kinase; Computational biology; Genetics; Cell biology; Immune system; Enzyme; Biochemistry","score_opus":0.08336648720866009,"score_gpt":0.40091511191548557,"score_spread":0.3175486247068255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3122892082","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009931228,0.9909867,0.000005909315,0.00023888324,0.00074231444,0.00025802577,0.00037131936,0.00007042636,0.0072271293],"genre_scores_gemma":[0.00005186546,0.9893343,0.0005893097,0.00045593033,0.00027230105,0.000114958275,0.004397904,0.000077254044,0.0047062202],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968748,0.0009186555,0.00095318106,0.0006478467,0.000059992402,0.00054551667],"domain_scores_gemma":[0.9985165,0.00017639714,0.00035676564,0.00082535425,0.000058186033,0.00006678427],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004368483,0.0005444999,0.0031375547,0.00083210797,0.00004764226,0.000013708513,0.0003032636,0.00088405824,0.002368356],"category_scores_gemma":[0.000041582705,0.0004615987,0.0006421943,0.00075856934,0.00029374,0.000036637306,0.00017371676,0.001111598,0.00015180503],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003204395,0.00018073512,0.00003610345,0.0019278991,0.0003587721,0.00026122917,0.00013999805,4.7606544e-8,0.00040958912,0.00015783781,0.026564514,0.96993124],"study_design_scores_gemma":[0.0011662748,0.00012836792,0.0000092950095,0.008761331,0.00033488267,0.00096993684,0.000011986109,1.6339213e-7,0.00009367486,0.000046148896,0.9881086,0.0003693545],"about_ca_topic_score_codex":0.00005162476,"about_ca_topic_score_gemma":0.00008372615,"teacher_disagreement_score":0.9695619,"about_ca_system_score_codex":0.0004254543,"about_ca_system_score_gemma":0.00037323058,"threshold_uncertainty_score":0.9997836},"labels":[],"label_agreement":null},{"id":"W3127808000","doi":"10.1016/j.tim.2021.01.005","title":"Evolution of Microbial Genomics: Conceptual Shifts over a Quarter Century","year":2021,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"U.S. National Library of Medicine; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Biology; Genomics; Evolutionary biology; Population genomics; Quarter (Canadian coin); Microbial genetics; Computational biology; Genetics; Genome; Bacteria; Gene","score_opus":0.02427374324904663,"score_gpt":0.2861023907750896,"score_spread":0.26182864752604296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127808000","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01150421,0.9852583,0.000005134499,0.000014945505,0.000826042,0.00026326397,0.00046936952,0.000020333478,0.001638408],"genre_scores_gemma":[0.0042713527,0.99172527,0.00026410382,0.00012759009,0.000119064716,0.00003167034,0.003053413,0.00004839478,0.0003591533],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960842,0.0016334006,0.0009703356,0.0006758458,0.000033051907,0.0006031643],"domain_scores_gemma":[0.9984795,0.000256802,0.0005195668,0.0006776423,0.000010420176,0.00005608861],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033044332,0.0004951949,0.002110727,0.0003026181,0.00008266768,0.0000059530425,0.0008088969,0.0012109365,0.025323931],"category_scores_gemma":[0.000021779877,0.00047020474,0.0005379313,0.00058388384,0.0012627455,0.000056676527,0.00080294,0.0009941874,0.00045319277],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018288003,0.0018264522,0.00092326174,0.0020287258,0.00073361566,0.00011627968,0.004066829,0.00008671132,0.094207674,0.001955901,0.16326721,0.73060447],"study_design_scores_gemma":[0.0004180529,0.00012890896,0.00021383303,0.0004695157,0.0001447732,0.000097219054,0.00006665907,6.3805953e-7,0.000020201778,0.000036496134,0.9979898,0.00041394026],"about_ca_topic_score_codex":0.00042226096,"about_ca_topic_score_gemma":0.0030998264,"teacher_disagreement_score":0.8347225,"about_ca_system_score_codex":0.0008364889,"about_ca_system_score_gemma":0.000120592085,"threshold_uncertainty_score":0.999775},"labels":[],"label_agreement":null},{"id":"W3154538868","doi":"10.1016/j.tim.2021.03.010","title":"Lacticaseibacillus rhamnosus GR-1, a.k.a. Lactobacillus rhamnosus GR-1: Past and Future Perspectives","year":2021,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":76,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"","keywords":"Lactobacillus rhamnosus; Probiotic; Bacterial vaginosis; Biology; Genitourinary system; Diarrhea; Microbiology; Lactobacillus; Urinary system; Internal medicine; Medicine; Bacteria; Genetics; Endocrinology","score_opus":0.03479559256931233,"score_gpt":0.2920940605079075,"score_spread":0.2572984679385952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3154538868","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013730669,0.99325913,2.8771728e-7,0.0010086548,0.0007124938,0.0002974624,0.0010645124,0.00007599329,0.0022083712],"genre_scores_gemma":[0.001388809,0.9934853,0.00009108671,0.00010501693,0.0012620243,0.00004262856,0.002450605,0.000009580685,0.0011649891],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962581,0.0005938856,0.0007892052,0.0013650472,0.00009316805,0.0009005868],"domain_scores_gemma":[0.9987868,0.0003190709,0.0003714877,0.00024637103,0.00008967395,0.00018660932],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00032760622,0.0008409147,0.0022030186,0.0001749615,0.00021112835,0.000115476614,0.0005431422,0.0012901359,0.0012997292],"category_scores_gemma":[0.000034431057,0.00035718633,0.0005734751,0.0011924887,0.00037470163,0.000076739336,0.00047336202,0.0010790422,0.000050538052],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018560178,0.00022346328,0.000030651783,0.00027805453,0.00017331641,0.0001957118,0.00016347664,6.024427e-8,0.0005544609,0.0007395625,0.0015515796,0.9960711],"study_design_scores_gemma":[0.0002842373,0.00033968964,0.00021295616,0.0006552534,0.00021692314,0.0010592833,0.0007886583,4.2508225e-7,0.0000054977213,0.000024792871,0.99568254,0.0007297586],"about_ca_topic_score_codex":0.00006120032,"about_ca_topic_score_gemma":0.00060613436,"teacher_disagreement_score":0.99534136,"about_ca_system_score_codex":0.00021431703,"about_ca_system_score_gemma":0.000046555768,"threshold_uncertainty_score":0.999888},"labels":[],"label_agreement":null},{"id":"W3183639276","doi":"10.1016/j.tim.2021.07.002","title":"Molecular Determinants of SARS-CoV-2 Variants","year":2021,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; Université de Montréal; University of Saskatchewan; McMaster University; University of Waterloo","funders":"","keywords":"Biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Virology; 2019-20 coronavirus outbreak; Sars virus; Pandemic; Computational biology; Genetics; Disease; Infectious disease (medical specialty); Outbreak","score_opus":0.05499309640302102,"score_gpt":0.38402673959399014,"score_spread":0.3290336431909691,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3183639276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99429965,0.0007492124,0.000024782741,0.00016101106,0.00014344124,0.000066466404,0.00002535749,0.000018341056,0.004511728],"genre_scores_gemma":[0.9882364,0.0000062459494,0.00043798098,0.011148822,0.000031135503,0.000009730852,0.000021106087,0.000020928845,0.00008759495],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986085,0.00014551262,0.00037190007,0.00038706858,0.00006957479,0.00041739197],"domain_scores_gemma":[0.9992997,0.00006316784,0.00006719647,0.00045197146,0.00010318269,0.00001479279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020828257,0.00015260089,0.00050473696,0.00037024778,0.000017598915,0.0000050116532,0.00016930267,0.00022818492,0.00005325053],"category_scores_gemma":[0.00012535306,0.00013996844,0.00012446575,0.0006115851,0.00017289625,0.000024545043,0.00014313783,0.00024994346,0.00006208346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013847149,0.00022522076,0.049035423,0.000049713955,0.0000407259,0.0015436205,0.00010220485,9.721166e-8,0.93365675,0.000058863487,0.00037790815,0.014771002],"study_design_scores_gemma":[0.0017469535,0.00019148797,0.010467322,0.00006446405,0.000026041815,0.00069422706,0.000025678695,0.000034196364,0.96827435,0.000076607095,0.018282527,0.000116163086],"about_ca_topic_score_codex":0.000114370196,"about_ca_topic_score_gemma":0.00027739065,"teacher_disagreement_score":0.0385681,"about_ca_system_score_codex":0.000058826252,"about_ca_system_score_gemma":0.00019714059,"threshold_uncertainty_score":0.57077473},"labels":[],"label_agreement":null},{"id":"W31866140","doi":"10.1016/j.tim.2019.11.006","title":"Les superoxyde dismutases des protistes : caractérisation et origine phylogénétique","year":2005,"lang":"en","type":"dissertation","venue":"Trends in Microbiology","topic":"Metalloenzymes and iron-sulfur proteins","field":"Energy","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Social Sciences and Humanities Research Council of Canada","keywords":"Molecular biology; Chemistry; Biology","score_opus":0.02851944157734671,"score_gpt":0.31504543736832524,"score_spread":0.28652599579097854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W31866140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94779664,0.0030140805,0.00001729665,0.0001654577,0.0004948386,0.0003583295,0.0002440733,0.00012976798,0.04777953],"genre_scores_gemma":[0.93713206,0.00060440256,0.001881704,0.000109269626,0.00033782524,0.00030567174,0.026842104,0.00011204223,0.0326749],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975502,0.0004258561,0.0007031901,0.00069553737,0.000072858,0.0005523666],"domain_scores_gemma":[0.999052,0.00010191743,0.00029860056,0.00040691087,0.000078063305,0.00006253036],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00027485166,0.0005586011,0.0007405547,0.000603657,0.00010661183,0.000039789844,0.000345284,0.0008532747,0.0031805097],"category_scores_gemma":[0.00007330676,0.0005044339,0.00020633962,0.00032448085,0.00013755454,0.00013565102,0.00003929735,0.0006513751,0.00009732595],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000376253,0.00052824616,0.0028277102,0.0003453732,0.00021969878,0.00004555315,0.0031221304,0.00048501926,0.47662595,0.035205506,0.001825595,0.478393],"study_design_scores_gemma":[0.0030969367,0.0010704563,0.124181814,0.0008347128,0.00032366323,0.0002092409,0.0017754963,0.00008025797,0.32172304,0.0031635158,0.5404838,0.0030571194],"about_ca_topic_score_codex":0.008286913,"about_ca_topic_score_gemma":0.17914835,"teacher_disagreement_score":0.53865814,"about_ca_system_score_codex":0.0002310374,"about_ca_system_score_gemma":0.00008269201,"threshold_uncertainty_score":0.9997407},"labels":[],"label_agreement":null},{"id":"W3198639849","doi":"10.1016/j.tim.2021.08.002","title":"The phosphate language of fungi","year":2021,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":78,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Biology; Phosphate; Adaptation (eye); Mediator; Plant Immunity; Immune system; Ecology; Homeostasis; Cell biology; Biochemistry; Immunology; Neuroscience; Gene; Arabidopsis","score_opus":0.026955278095702223,"score_gpt":0.2942014652472102,"score_spread":0.26724618715150794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3198639849","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014715234,0.9949489,4.2141252e-8,0.000041734154,0.00045874063,0.00007371028,0.0024345994,0.00001136931,0.0018837317],"genre_scores_gemma":[0.000023998646,0.9886503,0.000011345329,0.000020984538,0.000107247164,0.000017060398,0.007568644,0.000001101866,0.0035992765],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988093,0.00027255077,0.00041417364,0.00023514379,0.000024184257,0.0002446516],"domain_scores_gemma":[0.9970908,0.0025762497,0.00020258868,0.000088054025,0.000018991168,0.000023281382],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017897741,0.0001835106,0.00073996687,0.000029933053,0.000064761756,0.000015141535,0.00035653717,0.00024375174,0.0053546075],"category_scores_gemma":[0.000040344043,0.00005125434,0.0003448195,0.0004995071,0.000018839448,0.0000138982905,0.00008955531,0.00029056007,0.00018504441],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000028130996,0.000020698817,0.000012978721,0.00007128618,0.000030700245,0.000012152312,0.000017874037,3.149793e-8,0.0014410751,0.00025229494,0.0071883514,0.99094975],"study_design_scores_gemma":[0.0000104586525,0.000033938006,0.0000044013236,0.0009558474,0.000048145503,0.000126061,0.0000479247,1.8893881e-7,0.00004420447,0.0000059057215,0.9986128,0.00011009559],"about_ca_topic_score_codex":0.00036456564,"about_ca_topic_score_gemma":0.0012607261,"teacher_disagreement_score":0.9914245,"about_ca_system_score_codex":0.000019491135,"about_ca_system_score_gemma":0.0000121187295,"threshold_uncertainty_score":0.9955546},"labels":[],"label_agreement":null},{"id":"W3209585052","doi":"10.1016/j.tim.2021.09.011","title":"Networked collective microbiomes and the rise of subcellular 'units of life'","year":2021,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé","keywords":"Biology; Microbiome; Computational biology; Genetics","score_opus":0.03400256413768588,"score_gpt":0.277978799255412,"score_spread":0.24397623511772615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209585052","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0068668835,0.9912921,0.000001865938,0.000035615587,0.00018188152,0.0003017792,0.00017379307,0.000005856182,0.0011402245],"genre_scores_gemma":[0.0031872098,0.99491715,0.000099016914,0.00005423969,0.0000212261,0.000028532137,0.00048360476,0.000023024486,0.0011860135],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99512815,0.0032888467,0.00082966243,0.00038862837,0.000023534234,0.00034117434],"domain_scores_gemma":[0.9975928,0.0011722378,0.00063390733,0.0005404576,0.000022188533,0.000038377424],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007505613,0.00034817404,0.0025098934,0.0002160597,0.000098559656,0.0000036759493,0.0006775824,0.0006421527,0.0030619875],"category_scores_gemma":[0.00010569273,0.00023966136,0.00026579623,0.0014260866,0.0034810023,0.000021616852,0.0009415282,0.00066587713,0.000019732772],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00097654015,0.001079153,0.0014000545,0.0049676728,0.0023477168,0.00004606336,0.005974924,0.00016807806,0.01884106,0.0012988658,0.08947908,0.8734208],"study_design_scores_gemma":[0.0012291141,0.00012379147,0.000060159407,0.00066483946,0.00032167404,0.000092232105,0.00005571339,0.0000037548352,0.00008797076,0.00011934609,0.9969578,0.00028360062],"about_ca_topic_score_codex":0.00036133023,"about_ca_topic_score_gemma":0.0013395881,"teacher_disagreement_score":0.9074787,"about_ca_system_score_codex":0.00009096328,"about_ca_system_score_gemma":0.00013195285,"threshold_uncertainty_score":0.999231},"labels":[],"label_agreement":null},{"id":"W3215310490","doi":"10.1016/j.tim.2021.11.010","title":"From blooms to brooms","year":2021,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Phytoplasma; Biology; Effector; Broom; Ubiquitin; Computational biology; Transcription factor; Host (biology); Virology; Genetics; Cell biology; Ecology; Polymerase chain reaction; Gene","score_opus":0.01916513285333624,"score_gpt":0.23993743637572695,"score_spread":0.22077230352239072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3215310490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949033,0.00021206232,7.848661e-7,0.0019199769,0.00024127474,0.00002107874,0.00029513834,0.000024894493,0.0023814777],"genre_scores_gemma":[0.99600184,0.000013147642,0.000414339,0.0011266704,0.00026136133,0.0000065491095,0.0006147135,6.29386e-7,0.0015607291],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99918395,0.000055220436,0.0001503865,0.00032924055,0.00002080938,0.00026036496],"domain_scores_gemma":[0.9997663,0.00006993549,0.000022045479,0.00006171213,0.00002093303,0.000059062982],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000048033042,0.00009737988,0.00017782004,0.000016983144,0.0000373082,0.000014791657,0.00014944066,0.00010584314,0.0038125622],"category_scores_gemma":[0.000013561237,0.000040652325,0.0000607997,0.0003734175,0.000023222676,0.000019659286,0.0001001269,0.000090921625,0.00021228046],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008600295,0.000050226263,0.014991503,2.843631e-7,0.000004769055,0.000037537495,0.00009869427,0.000001722409,0.9126514,0.000029748117,0.003579605,0.0685459],"study_design_scores_gemma":[0.00028766601,0.00013304013,0.21869206,0.000016923257,0.000007729181,0.00005803969,0.00018370825,0.00000438768,0.21327697,0.00045196735,0.56658727,0.00030024722],"about_ca_topic_score_codex":0.000089079425,"about_ca_topic_score_gemma":0.0074248696,"teacher_disagreement_score":0.69937444,"about_ca_system_score_codex":0.00001658091,"about_ca_system_score_gemma":0.0000033133983,"threshold_uncertainty_score":0.9970981},"labels":[],"label_agreement":null},{"id":"W4206817407","doi":"10.1016/j.tim.2021.12.005","title":"Electron flow: key to mitigating ruminant methanogenesis","year":2022,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Methanogenesis; Rumen; Biology; Fermentation; Ruminant; Methane; Ecosystem; Biochemical engineering; Anaerobic exercise; Ecology; Biotechnology; Food science; Physiology","score_opus":0.009447165005455468,"score_gpt":0.23261469784360267,"score_spread":0.2231675328381472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206817407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952411,0.0005467615,0.00025231883,0.0008757031,0.0008769513,0.000073967305,0.000035499237,0.00020051695,0.0018971656],"genre_scores_gemma":[0.9963027,0.000016063685,0.0021092768,0.0001314503,0.00006645013,0.00004983552,0.0001218764,0.000020046793,0.001182304],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99923223,0.00006902888,0.00017271991,0.00020944873,0.000027383488,0.00028918817],"domain_scores_gemma":[0.99980396,0.000011849851,0.000016878446,0.00012819965,0.000008212047,0.000030887946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019448706,0.000107354295,0.00014060488,0.0003211149,0.0000686213,0.000004659722,0.00012367294,0.000044010907,0.0005552958],"category_scores_gemma":[0.0000083685,0.000114063325,0.000039521205,0.00050998264,0.000017519447,0.000021690223,0.00006278815,0.00016442093,0.000041983396],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014310055,0.000024287137,0.00024435847,0.0000024561912,0.000015155011,0.0000056509502,0.00030284483,0.034963068,0.9296571,0.0004710745,0.009796638,0.024503049],"study_design_scores_gemma":[0.00040917506,0.0002651805,0.0018652015,0.0000070319925,0.000014015504,0.00015129018,0.00021298375,0.00063198595,0.33608836,0.00006397723,0.6599123,0.00037847296],"about_ca_topic_score_codex":0.000022560667,"about_ca_topic_score_gemma":0.0000653036,"teacher_disagreement_score":0.65011567,"about_ca_system_score_codex":0.00017133853,"about_ca_system_score_gemma":0.000008208647,"threshold_uncertainty_score":0.60800993},"labels":[],"label_agreement":null},{"id":"W4206945683","doi":"10.1016/j.tim.2021.12.007","title":"Nucleotide biosynthesis: the base of bacterial pathogenesis","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":141,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Pathogenesis; Biosynthesis; Nucleotide; Base (topology); Microbiology; Computational biology; Genetics; Gene; Immunology","score_opus":0.06413261473353209,"score_gpt":0.2749570677554801,"score_spread":0.21082445302194802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206945683","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021933473,0.9943175,5.923452e-8,0.000121779216,0.0004768177,0.00022292337,0.0021527973,0.000021531263,0.0004932967],"genre_scores_gemma":[0.00086182496,0.99702084,0.000023583721,0.00004545412,0.0001457614,0.000048754617,0.0016912553,0.0000033799583,0.00015917433],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979103,0.00067193515,0.00061259733,0.00041952735,0.00004461574,0.00034097864],"domain_scores_gemma":[0.99896544,0.0004737496,0.00036058133,0.00015865464,0.000009918261,0.000031663563],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00046318452,0.0003010346,0.0010302832,0.00007650094,0.00010829376,0.00001323691,0.0008254695,0.00028534,0.008444916],"category_scores_gemma":[0.000031038446,0.00009170127,0.0004906468,0.0007283353,0.00015265969,0.000015062175,0.00034778522,0.00030216257,0.00001921906],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010686943,0.000094506504,0.0000039190554,0.00012744853,0.0000469676,0.000006185943,0.000013951873,7.82834e-8,0.018051542,0.000048420618,0.00041734867,0.98117894],"study_design_scores_gemma":[0.00005430622,0.0001547627,0.000053733937,0.00022329866,0.00013062892,0.000033634427,0.000030464966,1.847997e-7,0.00007115071,0.000011885128,0.99903774,0.00019821411],"about_ca_topic_score_codex":0.00005466399,"about_ca_topic_score_gemma":0.0002463637,"teacher_disagreement_score":0.9986204,"about_ca_system_score_codex":0.000053710377,"about_ca_system_score_gemma":0.000019976957,"threshold_uncertainty_score":0.9924615},"labels":[],"label_agreement":null},{"id":"W4210482530","doi":"10.1016/j.tim.2022.01.004","title":"Microbes and Parkinson’s disease: from associations to mechanisms","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Parkinson's Disease Mechanisms and Treatments","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Aligning Science Across Parkinson’s","keywords":"Biology; Disease; Parkinson's disease; Neuroscience; Pathology","score_opus":0.050641042276427115,"score_gpt":0.3386804320681658,"score_spread":0.28803938979173865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210482530","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00045804825,0.9889533,0.0000171791,0.0001725338,0.0004259018,0.00059010595,0.009044304,0.00006831115,0.00027033399],"genre_scores_gemma":[0.00021620965,0.98044586,0.0016875957,0.0004639065,0.00009020918,0.00053956057,0.014548509,0.000084532665,0.0019236228],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975596,0.0003146617,0.0005541022,0.0009961537,0.00008543503,0.00049006543],"domain_scores_gemma":[0.99873596,0.00018656859,0.00022724445,0.0004924243,0.000015642338,0.00034213922],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001566145,0.0005440168,0.0019155251,0.0008293093,0.00012313481,0.000021594415,0.00020721147,0.00031301906,0.0029499142],"category_scores_gemma":[0.000052042727,0.00047526546,0.0004108008,0.000536046,0.0000404414,0.000024386956,0.00030746002,0.00041283955,0.0001318011],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006962268,0.0005686234,0.0003202468,0.0006026389,0.0007978583,0.0005771359,0.000086115484,2.0901822e-7,0.00013569629,0.00027953275,0.0042006676,0.99236166],"study_design_scores_gemma":[0.0008141659,0.00014240271,0.0016506623,0.0008836267,0.001901328,0.000054604378,0.000012654157,4.922319e-7,0.000005060881,0.0002723511,0.9938953,0.0003673327],"about_ca_topic_score_codex":0.00015170709,"about_ca_topic_score_gemma":0.00014222032,"teacher_disagreement_score":0.9919943,"about_ca_system_score_codex":0.000600005,"about_ca_system_score_gemma":0.00021468433,"threshold_uncertainty_score":0.9997699},"labels":[],"label_agreement":null},{"id":"W4213248990","doi":"10.1016/j.tim.2022.01.014","title":"Gut-on-chip for ecological and causal human gut microbiome research","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Gut microbiome; Microbiome; Ecology; Computational biology; Evolutionary biology; Bioinformatics","score_opus":0.25713307048625444,"score_gpt":0.4729638260369324,"score_spread":0.21583075555067793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213248990","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011351544,0.9923335,0.000005971608,0.000093108276,0.00068846776,0.00097578485,0.0006839628,0.00020478155,0.0038792973],"genre_scores_gemma":[0.000387926,0.99361426,0.00055102754,0.000031980824,0.00029591596,0.0009771108,0.0019111944,0.00015632864,0.0020742393],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955794,0.00096047565,0.00085910584,0.0009656642,0.00015227465,0.0014830518],"domain_scores_gemma":[0.99592024,0.0032183283,0.00007736096,0.0005792542,0.00003521811,0.00016957436],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0030440504,0.0005374323,0.0016786739,0.0024663834,0.00026140292,0.000050233022,0.0010993776,0.0010784196,0.0026486535],"category_scores_gemma":[0.00032054013,0.00046179618,0.00028847725,0.0012463254,0.00078089605,0.000020952448,0.0008827166,0.0030134483,0.00012447915],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012780901,0.00013554412,0.000005188518,0.004623984,0.00014763996,0.000076705765,0.00004801309,0.0000041648327,0.0034928285,0.00057576486,0.032239646,0.9586377],"study_design_scores_gemma":[0.0004159,0.0004527804,0.00003847954,0.0005996714,0.000034361354,0.00012569404,0.0000084232215,0.000008665923,0.000009270621,0.00014875772,0.9977426,0.0004154181],"about_ca_topic_score_codex":0.000015206518,"about_ca_topic_score_gemma":0.000056801564,"teacher_disagreement_score":0.9655029,"about_ca_system_score_codex":0.00072496367,"about_ca_system_score_gemma":0.00009863638,"threshold_uncertainty_score":0.9997834},"labels":[],"label_agreement":null},{"id":"W4214505754","doi":"10.1016/j.tim.2022.01.017","title":"Targeting bacterial transferrin and lactoferrin receptors for vaccines","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Receptor; Lactoferrin; Glycoprotein; Microbiology; Bacteria; Transferrin receptor; Host (biology); Immunology; Genetics","score_opus":0.04925278826636667,"score_gpt":0.35603318552241864,"score_spread":0.306780397256052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214505754","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013361169,0.9969994,0.000011722591,0.00003540592,0.00058035855,0.0004888241,0.00036281667,0.000013268662,0.00017209473],"genre_scores_gemma":[0.000056783738,0.9932998,0.0004154357,0.000025551382,0.00037912148,0.0006575406,0.003819958,0.00006596864,0.0012798798],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99776685,0.00043425296,0.0004986587,0.0007445464,0.000032369615,0.00052332797],"domain_scores_gemma":[0.9994157,0.00014329099,0.0001221468,0.00024593566,0.000021757227,0.000051178584],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044983748,0.00041750818,0.0010952875,0.00026406502,0.000115996845,0.000015315916,0.00034203648,0.00042785623,0.00042413065],"category_scores_gemma":[0.0001729099,0.0003659749,0.0002711614,0.00021988213,0.0001078398,0.0000021897224,0.0003939404,0.00035001614,0.0000018877578],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015758877,0.00007429342,0.00003744701,0.0022657246,0.00031446922,0.000004533904,0.00005886175,8.5928315e-7,0.026975095,0.000015802312,0.009272915,0.9608224],"study_design_scores_gemma":[0.00056168786,0.00037450838,0.0000040991276,0.00015452497,0.00008040415,0.000025582858,0.000024564,6.02665e-7,0.000081635284,0.000003391347,0.9983387,0.00035031105],"about_ca_topic_score_codex":0.000018105433,"about_ca_topic_score_gemma":0.000158105,"teacher_disagreement_score":0.98906577,"about_ca_system_score_codex":0.000056866244,"about_ca_system_score_gemma":0.000109647626,"threshold_uncertainty_score":0.99987924},"labels":[],"label_agreement":null},{"id":"W4234663249","doi":"10.1016/s0966-842x(04)00092-7","title":"Did trypanosomatid parasites have photosynthetic ancestors?","year":2004,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Plastid; Chloroplast; Apicoplast; Lineage (genetic); Botany; Phylogenetics; Ultrastructure; Photosynthesis; Endosymbiosis; Algae; Evolutionary biology; Gene; Genetics","score_opus":0.013352801537340699,"score_gpt":0.2564031720945487,"score_spread":0.24305037055720802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4234663249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965641,0.0006064147,0.00010165802,0.00017459631,0.00016988369,0.000075522206,0.000088123874,0.000014171546,0.002205522],"genre_scores_gemma":[0.9979782,0.00006888998,0.0006525296,0.00032477645,0.00007586387,0.000012313847,0.00036087798,0.00001136056,0.0005152052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905723,0.00006483091,0.00016898541,0.00037026673,0.00002526268,0.00031340917],"domain_scores_gemma":[0.9995946,0.00000852679,0.00006078721,0.0002726324,0.000017746514,0.000045695237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006223661,0.00016310108,0.00018551601,0.00011305219,0.000060284798,0.000008203708,0.00026035885,0.00024162348,0.00013063881],"category_scores_gemma":[0.000019269371,0.00016190943,0.00008763172,0.00010724214,0.00018738178,0.000003009818,0.00010362387,0.000115578114,0.00005701716],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007085638,0.000107539876,0.03692577,0.000006104616,0.000026502981,0.000015218797,0.00010589899,0.00009779477,0.9604928,0.00011243721,0.0005082675,0.0015308192],"study_design_scores_gemma":[0.0015797252,0.0004125806,0.049303498,0.000020586182,0.000015276964,0.00015296026,0.000051150237,0.0000016899935,0.9275798,0.00052741216,0.019993704,0.0003615897],"about_ca_topic_score_codex":0.00007345232,"about_ca_topic_score_gemma":0.0005049367,"teacher_disagreement_score":0.032912962,"about_ca_system_score_codex":0.000029813693,"about_ca_system_score_gemma":0.000030872034,"threshold_uncertainty_score":0.66024745},"labels":[],"label_agreement":null},{"id":"W4236737877","doi":"10.1016/j.tim.2019.10.003","title":"Cryptococcus neoformans","year":2019,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Cryptococcus neoformans; Biology; Cell biology; Proteasome; Transcription factor; Protein kinase A; Signal transduction; Virulence; Kinase; Biochemistry; Microbiology; Gene","score_opus":0.014052868464422599,"score_gpt":0.29014116886572566,"score_spread":0.27608830040130306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236737877","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90948874,0.00017898201,0.0000046017053,0.0005223298,0.0003446627,0.000079460406,0.00000632812,0.00002987236,0.08934502],"genre_scores_gemma":[0.9855713,0.000027732674,0.0001933597,0.00038923378,0.000041655185,0.000010375349,0.000039428985,0.000005940017,0.013720966],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99953175,0.000014249794,0.00012481686,0.00013098362,0.00001094876,0.0001872449],"domain_scores_gemma":[0.9997916,0.000020360216,0.00001852799,0.00013538585,0.000015826365,0.000018262734],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000056962315,0.00007198961,0.00019712815,0.00019602796,0.000019896404,0.0000019374459,0.000030165189,0.00007437098,0.0021587666],"category_scores_gemma":[0.000005430574,0.000054708536,0.000050533512,0.00018394741,0.000044327982,0.00001665929,0.00003054332,0.00013316974,0.00069629186],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001317297,0.00020301419,0.5435187,0.00003276897,0.000076200624,0.00002379136,0.00042612516,0.000013817714,0.4107256,0.0013396307,0.024742033,0.018766584],"study_design_scores_gemma":[0.003280942,0.0011028263,0.4647771,0.000050439354,0.000032175652,0.00038517857,0.00019130911,0.00004183775,0.0055500073,0.00008514485,0.5242746,0.00022844103],"about_ca_topic_score_codex":0.000035875197,"about_ca_topic_score_gemma":0.00007449096,"teacher_disagreement_score":0.49953255,"about_ca_system_score_codex":0.000036018024,"about_ca_system_score_gemma":0.000008988308,"threshold_uncertainty_score":0.99875337},"labels":[],"label_agreement":null},{"id":"W4281480376","doi":"10.1016/j.tim.2022.05.005","title":"Reductive biomining of pyrite by methanogens","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia, Okanagan Campus","funders":"Chemical Sciences, Geosciences, and Biosciences Division; Basic Energy Sciences; U.S. Department of Energy","keywords":"Pyrite; Pyrrhotite; Anoxic waters; Sulfur; Sulfide; Mackinawite; Dissolution; Iron sulfide; Sulfide minerals; Environmental chemistry; Greigite; Chemistry; Mineralogy; Materials science; Metallurgy","score_opus":0.04066728786663994,"score_gpt":0.3326066923176843,"score_spread":0.2919394044510444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281480376","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006373061,0.9925684,0.000014945768,0.000017144106,0.0001486529,0.00015192447,0.00031365704,0.000027199281,0.0066943495],"genre_scores_gemma":[0.000066155895,0.99578905,0.0007163171,0.000023004239,0.00001800501,0.00007592682,0.001011814,0.00002298046,0.00227677],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984911,0.00033158265,0.00049896166,0.000406329,0.000045532546,0.00022649691],"domain_scores_gemma":[0.9992367,0.000115250936,0.0003704865,0.00025168294,0.000001989752,0.000023863673],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00035823238,0.0002196652,0.00088005257,0.00032873955,0.000031012372,0.000002051371,0.00038872543,0.0002464647,0.014384273],"category_scores_gemma":[0.00002732683,0.00018352449,0.0002088172,0.00071919564,0.00026013696,0.000027226679,0.00036730015,0.00029077107,0.000039567836],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000017265048,0.00004977497,0.000003477017,0.0001571227,0.00002652507,0.000005159723,0.00018274435,2.9036084e-7,0.018443715,0.000005564288,0.015791511,0.9653324],"study_design_scores_gemma":[0.00005877789,0.000066129855,4.572192e-7,0.00010989076,0.000059411268,0.00003117336,0.00002223679,2.2180264e-7,0.002227257,0.000022725244,0.9972294,0.00017233728],"about_ca_topic_score_codex":0.00009233417,"about_ca_topic_score_gemma":0.000018083654,"teacher_disagreement_score":0.98143786,"about_ca_system_score_codex":0.00020963089,"about_ca_system_score_gemma":0.000013265336,"threshold_uncertainty_score":0.9865167},"labels":[],"label_agreement":null},{"id":"W4287844883","doi":"10.1016/j.tim.2022.06.005","title":"Phase separation in viral infections","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Reprogramming; Function (biology); Organelle; Viral replication; Protocell; Computational biology; Cell biology; Cell; Virology; Virus; Genetics","score_opus":0.047511098342052506,"score_gpt":0.42404256247289873,"score_spread":0.3765314641308462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4287844883","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008642315,0.9896927,0.000011313502,0.000012101383,0.00018704447,0.00020065626,0.00013476101,0.000007911309,0.0011112182],"genre_scores_gemma":[0.00037472427,0.98965025,0.000029100074,0.000031063893,0.00010121654,0.0002094424,0.00624497,0.000026506661,0.0033327406],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99827975,0.00044718428,0.00041334247,0.00046182,0.000029018107,0.00036890726],"domain_scores_gemma":[0.99952084,0.00003106484,0.000105935746,0.00029739708,0.000008067814,0.000036704125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002940643,0.00022886907,0.00058953353,0.00063304236,0.000051725863,0.000010146153,0.00024016351,0.00035798727,0.00043878634],"category_scores_gemma":[0.00004577263,0.00021703671,0.00020968817,0.0004308371,0.00006441487,0.0000022779464,0.00019586492,0.00048595326,0.000022590819],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023600849,0.00035534223,0.00001799268,0.00020819568,0.000038529462,0.000021597549,0.000010637536,0.0000074114187,0.02102533,0.000020924315,0.002003805,0.9762666],"study_design_scores_gemma":[0.0007779708,0.00059312745,0.000001553613,0.0001005866,0.000018552388,0.00010755332,0.0000047393896,0.0000039128868,0.00010495828,0.000003676187,0.9980869,0.00019641576],"about_ca_topic_score_codex":0.00007018578,"about_ca_topic_score_gemma":0.0006300243,"teacher_disagreement_score":0.99608314,"about_ca_system_score_codex":0.00011596648,"about_ca_system_score_gemma":0.00014512119,"threshold_uncertainty_score":0.88505006},"labels":[],"label_agreement":null},{"id":"W4290038921","doi":"10.1016/j.tim.2022.06.003","title":"Role of metabolism in uropathogenic Escherichia coli","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; Escherichia coli; Virulence; Microbiology; Urinary system; Colonization; Function (biology); Pathogenesis; Gene; Immunology; Genetics","score_opus":0.028961851627038977,"score_gpt":0.3282985276595032,"score_spread":0.2993366760324642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4290038921","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0065499567,0.9907908,5.8642735e-7,0.000007450437,0.0001563368,0.00030127735,0.00028684092,0.0000073058673,0.0018994621],"genre_scores_gemma":[0.0006585294,0.99668044,0.00024646652,0.000030004494,0.000091528505,0.0003722615,0.0011317244,0.000064435575,0.0007246364],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99663025,0.0011295371,0.0008138691,0.00075388124,0.000073443065,0.0005990342],"domain_scores_gemma":[0.9989022,0.00008271243,0.0003263135,0.00061154494,0.000028449851,0.0000487719],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006206058,0.00045414205,0.0017587646,0.00063467067,0.000038626746,0.0000053346334,0.00076957024,0.00049787946,0.00037685194],"category_scores_gemma":[0.00016960052,0.00042026673,0.00045366384,0.0010233613,0.00024389851,0.000001963861,0.0010748892,0.0007111945,0.000008769292],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006905931,0.00031265157,0.000098837765,0.0011591974,0.00032109494,0.00002612097,0.00008483266,0.0000048626057,0.19558038,0.00009903542,0.00064827176,0.8015956],"study_design_scores_gemma":[0.00038721506,0.00015626098,0.0001494823,0.00016219767,0.00009095543,0.000027327793,0.000038423004,8.7892624e-7,0.00036376208,0.000011299865,0.9982741,0.00033813078],"about_ca_topic_score_codex":0.000082094266,"about_ca_topic_score_gemma":0.00048226948,"teacher_disagreement_score":0.99762577,"about_ca_system_score_codex":0.00008608495,"about_ca_system_score_gemma":0.0003062865,"threshold_uncertainty_score":0.99982494},"labels":[],"label_agreement":null},{"id":"W4310273637","doi":"10.1016/j.tim.2022.11.004","title":"Microbial nanowires: type IV pili or cytochrome filaments?","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":59,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Pilus; Biology; Microbiology; Cytochrome; Fimbriae Proteins; Fimbria; Nanowire; Cell biology; Biophysics; Biochemistry; Nanotechnology; Materials science; Gene; Escherichia coli","score_opus":0.057534383521471756,"score_gpt":0.31593624036435625,"score_spread":0.25840185684288447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310273637","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00067452324,0.99013406,0.0000013168126,0.000068911475,0.0022084,0.00078335754,0.00068697165,0.00008810755,0.005354358],"genre_scores_gemma":[0.000039035913,0.98315275,0.0003241898,0.00016713269,0.00014807998,0.00006338841,0.0035550687,0.00006873417,0.012481643],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968555,0.0004714514,0.00087104976,0.0010000633,0.000095501775,0.000706452],"domain_scores_gemma":[0.9989449,0.00010573678,0.0003414238,0.00052315346,0.000004562114,0.00008022999],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000382606,0.00059178687,0.0013730676,0.000361627,0.00016635445,0.000027650198,0.0008900603,0.0005605658,0.1692201],"category_scores_gemma":[0.000036002282,0.00044787987,0.0003347303,0.0013640756,0.000278196,0.00006909035,0.0008873201,0.00067791255,0.0021406896],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000675835,0.00023855602,0.000018128916,0.0007789956,0.000058468908,0.00010362823,0.000111517955,0.000007691019,0.015628498,0.000005307105,0.04890661,0.934075],"study_design_scores_gemma":[0.00032638918,0.00024610703,0.00001321986,0.00022927778,0.00011323061,0.00021390642,0.000008810581,0.0000010279066,0.000027176617,0.0000025217216,0.9982895,0.00052881683],"about_ca_topic_score_codex":0.00028167557,"about_ca_topic_score_gemma":0.0013498402,"teacher_disagreement_score":0.9493829,"about_ca_system_score_codex":0.0010124564,"about_ca_system_score_gemma":0.00007950439,"threshold_uncertainty_score":0.9997973},"labels":[],"label_agreement":null},{"id":"W4311115250","doi":"10.1016/j.tim.2022.11.006","title":"When ferroptosis meets pathogenic infections","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Ferroptosis and cancer prognosis","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Inner Mongolia University; National Natural Science Foundation of China","keywords":"Biology; Host (biology); Autophagy; Pathogen; Immune system; Pathogenic bacteria; Programmed cell death; Microbiology; Apoptosis; Immunology; Genetics; Bacteria","score_opus":0.07561911630613828,"score_gpt":0.35777938501772033,"score_spread":0.28216026871158206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311115250","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009811692,0.9933891,0.0000011001972,0.0002777775,0.0007544072,0.00041681543,0.00032178932,0.000096511816,0.0046443315],"genre_scores_gemma":[0.000093056486,0.9930654,0.00018797826,0.00025047426,0.0001818199,0.000978064,0.0025231629,0.00009624453,0.0026237706],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972628,0.0004534193,0.0008407795,0.00081067684,0.000075090604,0.0005572603],"domain_scores_gemma":[0.9987996,0.00013608787,0.000286845,0.0006520849,0.000023167557,0.000102181904],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00029434264,0.0005331539,0.002434552,0.0012810755,0.00010974174,0.000012557558,0.00029758643,0.0005768762,0.019907838],"category_scores_gemma":[0.000037998845,0.0004433559,0.001019548,0.0010424849,0.00012645489,0.00002695498,0.0002800122,0.0010957506,0.00015837236],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012354646,0.0003483557,0.000114869894,0.0017417031,0.00030609008,0.000040062096,0.000073484785,2.505518e-7,0.00006561364,0.000039669925,0.01223619,0.98502135],"study_design_scores_gemma":[0.00051033293,0.0004590109,0.00002781177,0.001334437,0.0013139634,0.0008556857,0.000014348584,3.0809653e-7,0.000004533721,0.0000062811678,0.99509966,0.00037360867],"about_ca_topic_score_codex":0.00008498982,"about_ca_topic_score_gemma":0.00014377752,"teacher_disagreement_score":0.98464775,"about_ca_system_score_codex":0.00066622935,"about_ca_system_score_gemma":0.00027316983,"threshold_uncertainty_score":0.9998018},"labels":[],"label_agreement":null},{"id":"W4311507718","doi":"10.1016/j.tim.2022.11.012","title":"Disentangling the microbial ecological factors impacting honey bee susceptibility to Paenibacillus larvae infection","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Fondation familiale Trottier; Canada First Research Excellence Fund","keywords":"American foulbrood; Biology; Honey bee; Larva; Microbiology; Pathogen; Spore; Probiotic; Paenibacillus polymyxa; Paenibacillus; Beekeeping; Brood; Zoology; Ecology; Bacteria","score_opus":0.11171810424529166,"score_gpt":0.35663818254042506,"score_spread":0.2449200782951334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311507718","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6949982,0.30137327,2.476825e-7,0.0002483194,0.000985995,0.0009312115,0.0009584223,0.000109242734,0.00039508316],"genre_scores_gemma":[0.11887267,0.8753624,0.000017941833,0.00017569962,0.000929512,0.00020719791,0.0039121113,0.0000110248175,0.00051144906],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957455,0.0016929787,0.00070446153,0.0008078755,0.000109890745,0.00093928614],"domain_scores_gemma":[0.99737465,0.0020807567,0.000244182,0.00014128834,0.00003087,0.00012827353],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012396933,0.0004938825,0.0011917654,0.00014849023,0.0005890477,0.00008161519,0.00072894065,0.00054362364,0.0126037905],"category_scores_gemma":[0.0003618111,0.00016249195,0.00064828846,0.0015400049,0.00017381783,0.000045285273,0.0006654453,0.0014173517,0.00009099372],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029065557,0.00017729553,0.0045558754,0.00016450492,0.000049800936,0.00002177544,0.00016459546,0.000005739314,0.008465961,0.000010550975,0.0007908776,0.98556393],"study_design_scores_gemma":[0.00008957341,0.00048319326,0.0036049264,0.0001518435,0.00007761724,0.00009320861,0.0000941503,0.000001417299,0.000044827237,0.000016536107,0.99490637,0.00043637],"about_ca_topic_score_codex":0.0010872929,"about_ca_topic_score_gemma":0.01661498,"teacher_disagreement_score":0.9941155,"about_ca_system_score_codex":0.00054811995,"about_ca_system_score_gemma":0.000050371593,"threshold_uncertainty_score":0.98829883},"labels":[],"label_agreement":null},{"id":"W4311949660","doi":"10.1016/j.tim.2022.11.013","title":"The forecasting power of the microbiome","year":2022,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Genome Canada","keywords":"Microbiome; Interpretability; Biology; Abiotic component; Exploit; Ecosystem; Ecology; Computational biology; Data science; Computer science; Machine learning; Bioinformatics","score_opus":0.0452295645597923,"score_gpt":0.3071264207767703,"score_spread":0.261896856216978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311949660","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00060204003,0.99627125,0.0000012570645,0.000051422612,0.0009291662,0.00019846065,0.00024904878,0.0000032817502,0.0016940503],"genre_scores_gemma":[0.0004289476,0.9962242,0.000060778275,0.000042929612,0.00007327838,0.00007159119,0.00028667945,0.0000368895,0.0027747096],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980739,0.0004078851,0.00062486617,0.00044546853,0.000039883307,0.0004080162],"domain_scores_gemma":[0.99861175,0.00012126976,0.00050494215,0.0007239819,0.000020684723,0.000017389297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005231575,0.00032645118,0.0008638951,0.00017604705,0.00021881027,0.000009474908,0.0009670259,0.00026693803,0.00015745105],"category_scores_gemma":[0.000118750424,0.00017572842,0.00060931384,0.000584753,0.0003386832,7.362265e-7,0.0011504627,0.00039277252,0.0000024920298],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028605327,0.00009108214,0.000038255115,0.0005277759,0.0006726775,0.000004050944,0.00006221015,0.0000014458705,0.022063235,0.00042640098,0.014566007,0.9615182],"study_design_scores_gemma":[0.00013885436,0.000090169444,0.000007498895,0.00010121196,0.000095652045,0.00012545152,0.000028352957,9.462843e-8,0.00031767524,0.000014476408,0.99889886,0.00018168722],"about_ca_topic_score_codex":0.000009864518,"about_ca_topic_score_gemma":0.00010699552,"teacher_disagreement_score":0.98433286,"about_ca_system_score_codex":0.00004582738,"about_ca_system_score_gemma":0.000096405834,"threshold_uncertainty_score":0.7165997},"labels":[],"label_agreement":null},{"id":"W4318191189","doi":"10.1016/j.tim.2023.01.002","title":"Nutrient stress is a target for new antibiotics","year":2023,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Context (archaeology); Transposon mutagenesis; Mutagenesis; Drug discovery; Computational biology; Antibiotics; Genetics; Mutant; Gene; Transposable element; Bioinformatics","score_opus":0.06840707003182153,"score_gpt":0.39209427686065057,"score_spread":0.323687206828829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4318191189","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007671319,0.996601,0.0003354185,0.00011760956,0.0002909283,0.00055413693,0.0018376783,0.000023473143,0.00016303585],"genre_scores_gemma":[0.000015293937,0.9732684,0.0011126162,0.00012024466,0.0004637876,0.000030883824,0.01168767,0.00011334821,0.013187789],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99750274,0.00012714809,0.00058096263,0.0009799292,0.000057122787,0.0007520839],"domain_scores_gemma":[0.99897975,0.000044882523,0.00017100821,0.0006069885,0.000051473035,0.00014587748],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019900115,0.00048083902,0.0011140121,0.00036449655,0.000042731324,0.000021177235,0.00066165195,0.0012615521,0.00007674167],"category_scores_gemma":[0.00008241947,0.00040881496,0.0006653177,0.00047722808,0.00015082199,0.0000010673348,0.00046154446,0.00037412104,0.000077218145],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009113229,0.00023926707,0.000009358749,0.006208794,0.000557129,0.000029549601,0.000025412004,9.035175e-7,0.036363535,0.00014191873,0.2179962,0.7383368],"study_design_scores_gemma":[0.00052972493,0.00029583086,3.4503128e-7,0.0009390499,0.00009299137,0.000035542445,0.0000039532447,9.2577267e-7,0.026806273,0.00007115743,0.9708036,0.00042060565],"about_ca_topic_score_codex":0.000022743507,"about_ca_topic_score_gemma":0.00004102838,"teacher_disagreement_score":0.75280744,"about_ca_system_score_codex":0.0000461905,"about_ca_system_score_gemma":0.0002844289,"threshold_uncertainty_score":0.9998364},"labels":[],"label_agreement":null},{"id":"W4362470374","doi":"10.1016/j.tim.2023.03.007","title":"Models are useful until high-resolution structures are available","year":2023,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Scopus; Biology; Cryo-electron microscopy; Cytochrome; Biophysics; Biochemistry; MEDLINE","score_opus":0.029700507101191143,"score_gpt":0.22264284964661685,"score_spread":0.1929423425454257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362470374","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3499854,0.0017773578,0.00016741225,0.60264695,0.01608943,0.0018271081,0.009210502,0.0012931186,0.0170027],"genre_scores_gemma":[0.12317474,0.001864662,0.0032253994,0.58179444,0.007125029,0.00017452454,0.038687628,0.00063060835,0.24332295],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973284,0.00021699678,0.00047918517,0.0009825412,0.00012644172,0.00086643],"domain_scores_gemma":[0.9989447,0.00006123533,0.00043724064,0.0004982707,0.000013094616,0.00004547511],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00022487403,0.00045451266,0.00056750485,0.0003454638,0.00010241005,0.00003609303,0.00057380303,0.001533399,0.012873634],"category_scores_gemma":[0.00001594887,0.0004049713,0.00013819852,0.0005754782,0.00028565308,0.000113083515,0.00038772097,0.0012089568,0.0036843547],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013579883,0.000017770159,0.0018494744,0.000035859368,0.000016006561,0.00010740923,0.000038638016,0.0018783738,0.025511276,0.0000027669364,0.97024554,0.0002833269],"study_design_scores_gemma":[0.0005057355,0.00006112839,0.008543786,0.000062292514,0.00004269761,0.000031820757,0.000014324252,0.00030582355,0.0012009103,0.0010365804,0.9874714,0.0007235002],"about_ca_topic_score_codex":0.0017453845,"about_ca_topic_score_gemma":0.0055583618,"teacher_disagreement_score":0.22681066,"about_ca_system_score_codex":0.00048245973,"about_ca_system_score_gemma":0.000014703547,"threshold_uncertainty_score":0.9998402},"labels":[],"label_agreement":null},{"id":"W4362560909","doi":"10.1016/j.tim.2023.03.012","title":"Bordetella pertussis","year":2023,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Alexandria University; Michael Smith Health Research BC","keywords":"Bordetella pertussis; Whooping cough; Incidence (geometry); Immunology; Pertussis vaccine; Immunity; Pediatrics; Medicine; Disease; Biology; Bordetella; Vaccination; Immune system; Internal medicine; Immunization; Bacteria","score_opus":0.02228244924869813,"score_gpt":0.2841165298725297,"score_spread":0.26183408062383157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362560909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992038,0.00041900083,0.0000028865034,0.000824446,0.0019535443,0.000047777296,0.000059824477,0.00024014572,0.004414343],"genre_scores_gemma":[0.98055744,0.00012438661,0.000020459525,0.00008985146,0.00005320534,0.000022272743,0.0007098751,0.000016015067,0.018406512],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988614,0.00014652127,0.00025163495,0.00029482343,0.0000028125967,0.00044282695],"domain_scores_gemma":[0.99960685,0.000088563764,0.000045987013,0.00022655481,0.000020689486,0.000011332712],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001758263,0.00014957401,0.00027015284,0.00064760586,0.000095168136,0.0000074945056,0.00015979818,0.00031109544,0.0049934187],"category_scores_gemma":[0.000026880394,0.00012690909,0.000083605,0.0008117029,0.00010845456,0.00003585451,0.000096391195,0.00020647554,0.004002556],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037332593,0.000046275578,0.0059545166,0.0000025328711,0.00003629028,0.0000032337007,0.00012046148,0.0000040834348,0.9199361,0.00028907915,0.041043013,0.032527044],"study_design_scores_gemma":[0.0014533311,0.00016313248,0.06367254,0.000011898478,0.000015545633,0.00021132165,0.00010237784,0.0000033250485,0.055005863,0.00012608187,0.8789503,0.00028426596],"about_ca_topic_score_codex":0.00015069076,"about_ca_topic_score_gemma":0.00029612114,"teacher_disagreement_score":0.8649303,"about_ca_system_score_codex":0.000026252348,"about_ca_system_score_gemma":0.000013097445,"threshold_uncertainty_score":0.99677294},"labels":[],"label_agreement":null},{"id":"W4366817653","doi":"10.1016/j.tim.2023.03.010","title":"Microbial endocrinology: the mechanisms by which the microbiota influences host sex steroids","year":2023,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Hormone; Host (biology); Gut flora; Physiology; Immunology; Endocrinology; Ecology","score_opus":0.03692198091565779,"score_gpt":0.3406246512762514,"score_spread":0.3037026703605936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366817653","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015745128,0.9928423,0.000016058955,0.000821037,0.0010864786,0.0009315624,0.002450043,0.000064386186,0.00021360726],"genre_scores_gemma":[0.0002619157,0.9865897,0.00008525202,0.0011364649,0.00039287625,0.00021910424,0.0054367185,0.00016553371,0.0057123774],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9942355,0.0013608938,0.0013062786,0.0014809555,0.0000708608,0.0015454849],"domain_scores_gemma":[0.99747455,0.00019513968,0.00063457916,0.0015189222,0.000083412975,0.000093367475],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0008533012,0.0010444077,0.0017329889,0.00039285515,0.00041803252,0.00009016172,0.0024371657,0.0015451672,0.00013358839],"category_scores_gemma":[0.00006422723,0.0006171455,0.0005928908,0.0011103877,0.0007340941,0.0000049747964,0.0011254003,0.0014307926,0.000458941],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031012456,0.00010750492,0.0000120489685,0.0009600538,0.00050453574,0.000015631802,0.00011708293,0.0000010111496,0.7131999,0.000090963775,0.2071819,0.07777836],"study_design_scores_gemma":[0.00046830604,0.0002413374,0.000017216586,0.000533071,0.00025021916,0.000784665,0.00007488478,1.5488949e-7,0.0025789354,0.000016761374,0.99437404,0.0006604299],"about_ca_topic_score_codex":0.00019087836,"about_ca_topic_score_gemma":0.0020129236,"teacher_disagreement_score":0.7871921,"about_ca_system_score_codex":0.00012264148,"about_ca_system_score_gemma":0.00043315272,"threshold_uncertainty_score":0.99975103},"labels":[],"label_agreement":null},{"id":"W4376127309","doi":"10.1016/j.tim.2023.04.005","title":"Models are useful until high-resolution structures are available","year":2023,"lang":"en","type":"erratum","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of General Medical Sciences","keywords":"Biology; Cryo-electron microscopy; Resolution (logic); Biophysics; Computer science; Artificial intelligence","score_opus":0.03270382869765249,"score_gpt":0.2476954667435859,"score_spread":0.2149916380459334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4376127309","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5589342,0.0053358013,0.000094181414,0.0063326573,0.15315579,0.0021334707,0.011583889,0.0020043622,0.26042563],"genre_scores_gemma":[0.12029033,0.0014923579,0.00051386195,0.0021333806,0.00078769325,0.0000981293,0.020900311,0.00023285736,0.8535511],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963143,0.00087779434,0.0005922168,0.0010168706,0.00007106733,0.0011277662],"domain_scores_gemma":[0.9981417,0.00015653193,0.00057341583,0.0010205846,0.00001825575,0.00008948771],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.00040046708,0.0006107481,0.0010721821,0.0004679207,0.00030849111,0.000019959067,0.0013089506,0.0023411263,0.041142963],"category_scores_gemma":[0.000050560295,0.00060252385,0.00018734646,0.0007440752,0.000880616,0.00012242713,0.001364141,0.002511855,0.0050993566],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006793529,0.00008521423,0.0013164667,0.00003115734,0.00005226315,0.000042261003,0.00011602031,0.004165507,0.006154375,0.00007134762,0.98771244,0.00018501599],"study_design_scores_gemma":[0.00088667136,0.00021527124,0.058181446,0.00012293624,0.000078760815,0.00007221343,0.00008708648,0.00042711233,0.0001415432,0.010633678,0.92800504,0.0011482638],"about_ca_topic_score_codex":0.0032360575,"about_ca_topic_score_gemma":0.09938183,"teacher_disagreement_score":0.59312546,"about_ca_system_score_codex":0.0005126114,"about_ca_system_score_gemma":0.000046463374,"threshold_uncertainty_score":0.9997894},"labels":[],"label_agreement":null},{"id":"W4381331222","doi":"10.1016/j.tim.2023.05.011","title":"Features and algorithms: facilitating investigation of secreted effectors in Gram-negative bacteria","year":2023,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Effector; Secretion; Biology; Computational biology; Function (biology); Homology (biology); Computer science; Genetics; Cell biology; Gene; Biochemistry","score_opus":0.03530410212838818,"score_gpt":0.31520311916428445,"score_spread":0.27989901703589626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381331222","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.18703592,0.8120227,0.0000012338819,0.0000071124286,0.00016435818,0.00025179284,0.0004797781,0.0000034515174,0.00003367524],"genre_scores_gemma":[0.0054032393,0.99205124,0.00083027576,0.000012319772,0.000057128975,0.000088234156,0.0013746133,0.000035920853,0.0001470261],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982938,0.00041372748,0.00052067416,0.0004993983,0.000021374846,0.0002509928],"domain_scores_gemma":[0.9993022,0.00019615136,0.00025334983,0.00019232249,0.000026583377,0.000029390772],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003046452,0.0003158158,0.0010100092,0.0003532249,0.000022731274,0.0000059153117,0.00014914847,0.0004722388,0.000003844354],"category_scores_gemma":[0.00013087486,0.00027465052,0.0001289928,0.0003364793,0.00024116643,5.527507e-7,0.00020288759,0.00019586492,0.0000016569895],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034012923,0.000021809226,0.0012220624,0.00438603,0.00042146005,0.000007808203,0.0009823837,0.0000050210774,0.2185514,0.000014903165,0.00034386903,0.7740092],"study_design_scores_gemma":[0.0100477105,0.0056333444,0.115467474,0.026644459,0.0016602172,0.0006386612,0.0020834827,0.00002631803,0.042589728,0.0015624213,0.7862549,0.007391333],"about_ca_topic_score_codex":0.00013578603,"about_ca_topic_score_gemma":0.00062332826,"teacher_disagreement_score":0.78591096,"about_ca_system_score_codex":0.000025437826,"about_ca_system_score_gemma":0.000050702834,"threshold_uncertainty_score":0.99997056},"labels":[],"label_agreement":null},{"id":"W4385142609","doi":"10.1016/j.tim.2023.06.009","title":"CIFAR humans and the microbiome: Banff meeting report","year":2023,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Cancer Research and Treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Canadian Institute for Advanced Research; University of British Columbia","funders":"","keywords":"Biology; Microbiome; Computational biology; Evolutionary biology; Environmental ethics; Ecology; Bioinformatics","score_opus":0.014928040790543357,"score_gpt":0.3134158409422493,"score_spread":0.29848780015170595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385142609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944905,0.0015028919,0.0000045550973,0.001016654,0.00011702652,0.00011138478,0.00005046455,0.000019933721,0.0026866132],"genre_scores_gemma":[0.9925581,0.0005645418,0.00007055583,0.00015359171,0.00008989544,0.000049438582,0.0010474718,0.00001665126,0.0054497565],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989168,0.00012380208,0.00020156364,0.00037324746,0.000027125685,0.00035745004],"domain_scores_gemma":[0.9995582,0.000028682465,0.00005444172,0.00030277693,0.000020589818,0.000035273202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000433698,0.00012542693,0.00016716136,0.00015477573,0.000094200055,0.000015491802,0.00015568762,0.000113586415,0.0000406231],"category_scores_gemma":[0.00004918883,0.00008785467,0.00006698779,0.0002835055,0.00036172065,0.0000016748004,0.00022696835,0.000100996775,0.0000275208],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025408788,0.000029956233,0.008291475,0.0000075832104,0.00009782208,0.00014854009,0.00012327234,0.0000067913747,0.9671151,0.00007068258,0.017399816,0.006454845],"study_design_scores_gemma":[0.016217109,0.0006064093,0.03154871,0.000056745423,0.000065459695,0.002211422,0.00035732152,0.000030468726,0.24999402,0.0005526333,0.6976064,0.00075330515],"about_ca_topic_score_codex":0.00031779075,"about_ca_topic_score_gemma":0.001414712,"teacher_disagreement_score":0.7171211,"about_ca_system_score_codex":0.000017526096,"about_ca_system_score_gemma":0.000025682615,"threshold_uncertainty_score":0.35826093},"labels":[],"label_agreement":null},{"id":"W4386546126","doi":"10.1016/j.tim.2023.08.008","title":"Macrolide esterases: current threats and opportunities","year":2023,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Bioremediation; Function (biology); Antibiotics; Antimicrobial; Microbiology; Antibiotic resistance; Hydrolysis; Bacteria; Biotechnology; Computational biology; Biochemistry; Genetics","score_opus":0.058800618966965264,"score_gpt":0.3125425231390382,"score_spread":0.25374190417207293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386546126","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98670334,0.011767305,0.0000051991556,0.00029456636,0.00024820623,0.00004425312,0.0000916736,0.000007462797,0.00083798106],"genre_scores_gemma":[0.9844438,0.013407847,0.00006330507,0.00016244665,0.00009361489,0.000021215159,0.00030689154,0.000013348769,0.0014875451],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992315,0.000046921272,0.00015665757,0.000287175,0.0000145564245,0.00026316167],"domain_scores_gemma":[0.9997322,0.000014631444,0.000034042554,0.00016827282,0.000015811393,0.00003503261],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011182083,0.00013282985,0.00015481767,0.00014459368,0.0000451554,0.000008545529,0.00009831861,0.0000839053,0.000015282532],"category_scores_gemma":[0.000006005304,0.0001228236,0.00003829488,0.00008592121,0.00013541966,4.2252466e-7,0.00020599604,0.000058094814,0.000010274458],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037283375,0.000028493056,0.015819488,0.0000142485915,0.00004264163,0.000010119106,0.00019772591,0.000017999086,0.7329712,0.00025119446,0.006064731,0.2445449],"study_design_scores_gemma":[0.0018154486,0.00050989067,0.07251493,0.000032388096,0.000034337663,0.00013365044,0.000425073,0.000027219672,0.04478039,0.001168731,0.87786067,0.0006972932],"about_ca_topic_score_codex":0.000009808529,"about_ca_topic_score_gemma":0.000109251414,"teacher_disagreement_score":0.8717959,"about_ca_system_score_codex":0.0000055611217,"about_ca_system_score_gemma":0.000015614663,"threshold_uncertainty_score":0.50086015},"labels":[],"label_agreement":null},{"id":"W4390588704","doi":"10.1016/j.tim.2023.12.005","title":"Interplay between Staphylococcus aureus and the vaginal microbiota","year":2024,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; Western University","funders":"Canadian Institutes of Health Research","keywords":"Staphylococcus aureus; Dysbiosis; Biology; Toxic shock syndrome; Vaginitis; Microbiology; Pathogen; Disease; Immunology; Microbiome; Bacteria; Bioinformatics; Medicine; Genetics; Internal medicine","score_opus":0.017233593203866415,"score_gpt":0.33650039479765176,"score_spread":0.31926680159378534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390588704","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96623516,0.02310689,0.00012041813,0.004763399,0.0013990756,0.00032340386,0.0002010772,0.00015849528,0.0036921103],"genre_scores_gemma":[0.9934902,0.00016523224,0.000049504753,0.00008699014,0.00011883081,0.000052776508,0.0002290938,0.000026452548,0.0057808966],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974668,0.00079773687,0.0004053863,0.0007177579,0.000016268652,0.0005960372],"domain_scores_gemma":[0.9986115,0.0008011673,0.000048219907,0.00047370928,0.00004480692,0.000020586898],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011031261,0.00026710783,0.0004437247,0.00082415703,0.00016039594,0.00005982447,0.00038132854,0.00034246984,0.0011181643],"category_scores_gemma":[0.00008950895,0.0001732821,0.00012410554,0.0006695174,0.0019940152,0.000093032984,0.00027554444,0.0012131402,0.000773589],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023886326,0.00006347364,0.007833882,0.000024250652,0.00040953312,0.000023036275,0.00092927663,0.0000024567996,0.9226825,0.0030306114,0.015543254,0.049218826],"study_design_scores_gemma":[0.0063321823,0.0005606672,0.069172546,0.00015929823,0.00018441529,0.0014857154,0.0003464878,0.000009171745,0.11951065,0.002278218,0.79917395,0.00078668864],"about_ca_topic_score_codex":0.00033209415,"about_ca_topic_score_gemma":0.00014114332,"teacher_disagreement_score":0.8031719,"about_ca_system_score_codex":0.000100686484,"about_ca_system_score_gemma":0.00005816781,"threshold_uncertainty_score":0.99979496},"labels":[],"label_agreement":null},{"id":"W4391836514","doi":"10.1016/j.tim.2024.01.005","title":"Deciphering Fc-effector functions against SARS-CoV-2","year":2024,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal; Université du Québec à Montréal","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Effector; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Virology; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Computational biology; Immunology; Infectious disease (medical specialty); Disease; Outbreak","score_opus":0.11119191328218682,"score_gpt":0.42974776415402677,"score_spread":0.31855585087183996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391836514","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0018180511,0.98769367,0.000014693899,0.0000616222,0.0014390525,0.00057317154,0.00035861845,0.00020951548,0.007831614],"genre_scores_gemma":[0.00009931826,0.98676455,0.00016385781,0.007758062,0.0010648533,0.00060269027,0.001509254,0.00027735543,0.0017600855],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99667245,0.0003295943,0.0008942191,0.0010940764,0.00010714516,0.0009025042],"domain_scores_gemma":[0.99864334,0.0002974927,0.0001420474,0.0008268613,0.000052767453,0.00003748845],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00047456753,0.0007284718,0.0025102447,0.0018420211,0.000066377186,0.000044328,0.000434127,0.0010307684,0.00007236882],"category_scores_gemma":[0.00011465535,0.0005415916,0.0009738537,0.0017933324,0.0002588059,0.000047508154,0.0003543336,0.0018704577,0.0062770923],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005464156,0.0001425725,0.000037077058,0.008111252,0.0005097903,0.0006097347,0.000049731414,3.729659e-8,0.034059707,0.000013903944,0.023382477,0.93302906],"study_design_scores_gemma":[0.00059049914,0.00026677293,0.0000033677309,0.0068309554,0.0007993818,0.00070142583,0.000008848441,0.0000041418916,0.0005264222,0.000004340105,0.9898382,0.00042565007],"about_ca_topic_score_codex":0.00006803127,"about_ca_topic_score_gemma":0.00038053465,"teacher_disagreement_score":0.9664557,"about_ca_system_score_codex":0.00071005046,"about_ca_system_score_gemma":0.0005264422,"threshold_uncertainty_score":0.9997036},"labels":[],"label_agreement":null},{"id":"W4393942094","doi":"10.1016/j.tim.2024.03.004","title":"Sinorhizobium (Ensifer) meliloti","year":2024,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Sinorhizobium meliloti; Biology; Sinorhizobium; Microbiology; Symbiosis; Rhizobia; Bacteria; Genetics","score_opus":0.017708431699815293,"score_gpt":0.2408767918304988,"score_spread":0.2231683601306835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393942094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913372,0.0013880078,1.1753113e-7,0.0030247995,0.0005973098,0.00004311697,0.00008582024,0.00020573007,0.0033179207],"genre_scores_gemma":[0.9973605,0.000010759554,0.00009215118,0.00038195823,0.00023296983,0.000008513663,0.00024004649,0.0000016626904,0.0016713854],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988471,0.00010037553,0.0002180154,0.00041614208,0.00003407557,0.00038425231],"domain_scores_gemma":[0.99969196,0.00016438993,0.000022191864,0.000062075334,0.000016276319,0.000043081967],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017666587,0.00015634598,0.00019189651,0.00007036615,0.00004606641,0.00004086145,0.00023961806,0.00017856697,0.0024092118],"category_scores_gemma":[0.000014304285,0.000059476057,0.00011158628,0.0007418439,0.00008162638,0.00006337215,0.00008201094,0.00020675306,0.00067172566],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008290541,0.000030411673,0.0015012315,0.0000030333033,0.000013761147,0.000033686283,0.000051065388,6.645499e-8,0.9374557,0.00047195388,0.0089528095,0.05147796],"study_design_scores_gemma":[0.00048295685,0.0007825308,0.10548111,0.00013533655,0.000064099644,0.00053015235,0.00017710545,0.000027117947,0.44338474,0.0019522161,0.44577277,0.0012098837],"about_ca_topic_score_codex":0.00018874301,"about_ca_topic_score_gemma":0.0009869138,"teacher_disagreement_score":0.494071,"about_ca_system_score_codex":0.000052175463,"about_ca_system_score_gemma":0.0000058751466,"threshold_uncertainty_score":0.99850273},"labels":[],"label_agreement":null},{"id":"W4402828852","doi":"10.1016/j.tim.2024.09.005","title":"The double play of a phage HTH regulator","year":2024,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences; Fonds de recherche du Québec – Nature et technologies; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Regulator; Genetics; Computational biology; Virology; Gene","score_opus":0.0073823069357353615,"score_gpt":0.308271651693814,"score_spread":0.3008893447580786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402828852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98155314,0.014859395,0.0004899115,0.00021836223,0.00055424194,0.000059267328,0.00003098687,0.00001655477,0.0022181468],"genre_scores_gemma":[0.99640065,0.00018087355,0.00016987353,0.000018994022,0.00008969547,0.000008923676,0.00007260482,0.000012322964,0.003046073],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994266,0.000019677362,0.0001613034,0.00019402031,0.000015971202,0.00018244192],"domain_scores_gemma":[0.99972355,0.000016727043,0.000016602673,0.00021588444,0.00001020341,0.000016999209],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013784121,0.000088179084,0.000096081174,0.00006601703,0.000021642532,0.000008550465,0.00014555008,0.00010580585,0.000035432186],"category_scores_gemma":[0.000005668994,0.00006307749,0.0000623556,0.00012959474,0.00008818528,8.562805e-7,0.0000643519,0.00007525984,0.0000063017874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038284325,0.000010027643,0.00013440844,0.000010757117,0.000031027834,0.0000032308285,0.00005882574,0.00012751819,0.98470604,0.000377444,0.004742911,0.009759499],"study_design_scores_gemma":[0.00039873397,0.00012063247,0.0009884896,0.000015362031,0.00000898704,0.000057456717,0.000025949901,0.00006695339,0.7270757,0.00003320327,0.27110335,0.00010518053],"about_ca_topic_score_codex":0.00000988008,"about_ca_topic_score_gemma":0.0001021878,"teacher_disagreement_score":0.26636043,"about_ca_system_score_codex":0.0000071383615,"about_ca_system_score_gemma":0.000018506516,"threshold_uncertainty_score":0.25722253},"labels":[],"label_agreement":null},{"id":"W4403130075","doi":"10.1016/j.tim.2024.08.009","title":"Transitioning ecosystems: how will permafrost cryophiles respond to a changing climate?","year":2024,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Permafrost; Biology; Ecosystem; Climate change; Ecology; Environmental resource management; Environmental science","score_opus":0.012303042148047496,"score_gpt":0.26734079667706945,"score_spread":0.25503775452902194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403130075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99061394,0.00036582377,0.00014872558,0.005201481,0.00035410197,0.00012410643,0.00046067542,0.00007868653,0.0026524607],"genre_scores_gemma":[0.9974473,0.00003211465,0.00024075937,0.00029737342,0.00007692157,0.000039287133,0.00018121957,0.00001799418,0.0016670431],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982945,0.00016978233,0.00015503349,0.0004245223,0.00004488298,0.0009113222],"domain_scores_gemma":[0.9996506,0.00007710314,0.0000152316325,0.00015624579,0.0000026716782,0.00009815971],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00060096564,0.0001343224,0.00018697463,0.00053906755,0.0001259764,0.00005396621,0.00020969808,0.00011963847,0.0047500846],"category_scores_gemma":[0.000021942513,0.0001222062,0.000059159327,0.0007361028,0.000115322895,0.00016957312,0.00021036867,0.0002121028,0.0011819256],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007506177,0.000037929814,0.008637044,0.00003222095,0.00001612781,0.00025378045,0.0029874917,0.00012438107,0.9699703,0.0002782428,0.008185188,0.0094022285],"study_design_scores_gemma":[0.001337355,0.0011374635,0.039435167,0.00034052558,0.000028458848,0.0014836754,0.0018754585,0.0042136842,0.0132674975,0.00031320253,0.93541324,0.0011542597],"about_ca_topic_score_codex":0.000053740445,"about_ca_topic_score_gemma":0.0037033667,"teacher_disagreement_score":0.9567028,"about_ca_system_score_codex":0.00024951115,"about_ca_system_score_gemma":0.000008886131,"threshold_uncertainty_score":0.99959576},"labels":[],"label_agreement":null},{"id":"W4403296914","doi":"10.1016/j.tim.2024.09.007","title":"Diverse molecular mechanisms underpinning Staphylococcus aureus small colony variants","year":2024,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; University of Calgary; Alberta Innovates; Genome Alberta; Canada Research Chairs; Canada Foundation for Innovation; Genome Canada","keywords":"Biology; Underpinning; Staphylococcus aureus; Microbiology; Computational biology; Genetics; Bacteria","score_opus":0.05695110989129769,"score_gpt":0.3531889701590043,"score_spread":0.2962378602677066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403296914","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019846846,0.9928639,0.0006454309,0.0001320676,0.0014175604,0.0010590004,0.000730303,0.00024336211,0.0027099017],"genre_scores_gemma":[0.00028480723,0.98721206,0.0042847167,0.00046976222,0.00019710812,0.00016289738,0.0015735829,0.00029006865,0.0055250167],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99501836,0.00043985128,0.0014378134,0.0016850845,0.00013196151,0.0012869309],"domain_scores_gemma":[0.9979006,0.00018307244,0.0004935656,0.0011052712,0.00009391478,0.00022359751],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00051107875,0.0012478272,0.0039956556,0.0022051914,0.000088441084,0.00005811966,0.00072646927,0.0017756385,0.00062872306],"category_scores_gemma":[0.00010177751,0.0010459468,0.0012516833,0.0019048349,0.00039485525,0.000037849906,0.00060739,0.0020642076,0.00080175576],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020571063,0.00061491225,0.00000766308,0.022132007,0.0024199802,0.014296281,0.00024911825,0.000005324114,0.032193195,0.005814209,0.025015164,0.89704645],"study_design_scores_gemma":[0.0010647931,0.00038621374,0.0000067265723,0.017215371,0.0039280015,0.0005720689,0.000067435605,0.0000037978637,0.00015292795,0.0004243851,0.9751085,0.0010697478],"about_ca_topic_score_codex":0.00008751766,"about_ca_topic_score_gemma":0.0002796934,"teacher_disagreement_score":0.9500934,"about_ca_system_score_codex":0.00094427547,"about_ca_system_score_gemma":0.000672907,"threshold_uncertainty_score":0.9999762},"labels":[],"label_agreement":null},{"id":"W4405973386","doi":"10.1016/j.tim.2024.12.001","title":"Assessing microbiota in vivo: debugging with medical imaging","year":2025,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Debugging; In vivo; Computational biology; Microbiome; Microbiology; Bioinformatics; Programming language; Biotechnology; Computer science","score_opus":0.029247561529387227,"score_gpt":0.3879340660402714,"score_spread":0.3586865045108842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405973386","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000096287506,0.9825595,0.00008444233,0.00051451544,0.00042027194,0.0004668023,0.000021843794,0.00011969078,0.01571667],"genre_scores_gemma":[0.00019314143,0.99463934,0.0010153231,0.0003908367,0.000116954405,0.000121956546,0.00053349877,0.00006802152,0.0029209098],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970615,0.0003756271,0.0009699401,0.00083858334,0.00008514924,0.00066920975],"domain_scores_gemma":[0.9986128,0.00043944048,0.00025967354,0.00057408627,0.000029352861,0.00008464295],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00063789816,0.0005701647,0.0022067465,0.0035296858,0.000053173502,0.000039728053,0.00032584605,0.0004993134,0.0012845832],"category_scores_gemma":[0.000120373414,0.00044837978,0.0002633035,0.0020801816,0.00021470455,0.00009750831,0.00028737716,0.0014517708,0.000032567652],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016837575,0.00080665,0.00076824625,0.0067919153,0.00018432764,0.001751605,0.00002618581,0.0000010055626,0.000034501143,0.00002948682,0.002638055,0.9869512],"study_design_scores_gemma":[0.0011314291,0.00011287243,0.00015180919,0.059325103,0.00067243306,0.0039393106,0.000025366238,0.000007998548,0.0000049632813,0.0000022425756,0.9342461,0.0003803653],"about_ca_topic_score_codex":0.00011287871,"about_ca_topic_score_gemma":0.0004498004,"teacher_disagreement_score":0.98657084,"about_ca_system_score_codex":0.00077443983,"about_ca_system_score_gemma":0.000691593,"threshold_uncertainty_score":0.9997968},"labels":[],"label_agreement":null},{"id":"W4407192154","doi":"10.1016/j.tim.2024.12.012","title":"Diversity in women and their vaginal microbiota","year":2025,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; University of New Brunswick","funders":"H2020 European Research Council; Biocodex Microbiota Foundation; Universiteit Antwerpen; National Institutes of Health; VLIRUOS; National Institute of General Medical Sciences; Engineering Research Centers; Ministerio de Ciencia e Innovación; Fonds Wetenschappelijk Onderzoek; Agencia Estatal de Investigación; Fondation Mérieux; Ministerio de Ciencia, Innovación y Universidades","keywords":"Biology; Diversity (politics); Microbiome; Vaginal flora; Evolutionary biology; Bacterial vaginosis; Ecology; Computational biology; Microbiology; Genetics","score_opus":0.046014439595936416,"score_gpt":0.34556879947481234,"score_spread":0.2995543598788759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407192154","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007214173,0.98981375,0.0000021331318,0.000066093,0.00068258564,0.00045033338,0.00033893035,0.000046482735,0.0013855236],"genre_scores_gemma":[0.002252058,0.98998904,0.000013840213,0.000038503564,0.00002632942,0.00013824314,0.00055172504,0.000026958964,0.006963301],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955808,0.0014694185,0.00070086675,0.0012260682,0.0000114680315,0.0010113928],"domain_scores_gemma":[0.99838793,0.0006568529,0.00019166323,0.00068946934,0.00004614887,0.00002791666],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00090866216,0.0006249344,0.0022621232,0.0031945915,0.0003008827,0.000013146895,0.00068412785,0.0012814789,0.00080794457],"category_scores_gemma":[0.00012385138,0.00050657504,0.00022789715,0.0014431882,0.00079467584,0.00006824948,0.0024314043,0.0019565285,0.00018911778],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007906332,0.00033000356,0.0006770836,0.0018739065,0.0003492462,0.000023612572,0.0010613806,2.963517e-7,0.0031940185,0.00007181284,0.001960159,0.9903794],"study_design_scores_gemma":[0.0009395674,0.0001337544,0.0007386103,0.00173521,0.0000461881,0.0005529885,0.00007704125,2.2485368e-8,0.000078979916,0.000107583204,0.9951437,0.00044632712],"about_ca_topic_score_codex":0.00034610723,"about_ca_topic_score_gemma":0.00032135137,"teacher_disagreement_score":0.99318355,"about_ca_system_score_codex":0.0007136633,"about_ca_system_score_gemma":0.00024314363,"threshold_uncertainty_score":0.9997386},"labels":[],"label_agreement":null},{"id":"W4411152881","doi":"10.1016/j.tim.2025.05.006","title":"Using the microbiota to study connectivity at human–animal interfaces","year":2025,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Human-Animal Interaction Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Consortium of International Agricultural Research Centers","keywords":"Biology; Computational biology; Evolutionary biology","score_opus":0.10068489073631522,"score_gpt":0.47110119274269996,"score_spread":0.37041630200638476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411152881","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13653386,0.8610589,0.000008125491,0.000043017564,0.0005344538,0.00078441016,0.00024003896,0.00001991368,0.0007772789],"genre_scores_gemma":[0.1754379,0.807612,0.000245836,0.00047646384,0.00059980404,0.0004627106,0.0008434404,0.0001598162,0.014162029],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968189,0.0008646832,0.0007418439,0.001060043,0.000037768914,0.00047675593],"domain_scores_gemma":[0.99873656,0.00012663151,0.0003026268,0.00072485616,0.00007072119,0.000038575843],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00039310285,0.0006136564,0.0014131125,0.00043897517,0.00028851963,0.000034699726,0.00074695854,0.0004415502,0.00023487565],"category_scores_gemma":[0.000087740314,0.00044253696,0.0003651845,0.00042605054,0.00020256614,0.000002667437,0.0020033193,0.00046507444,0.00005755805],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002722958,0.00093669555,0.0004964666,0.0012888032,0.0024528326,0.0000413546,0.0007560336,0.00000773856,0.8366683,0.000029216799,0.023060853,0.1339894],"study_design_scores_gemma":[0.00036483587,0.0007035798,0.00009914029,0.00078264484,0.0004129802,0.00016126373,0.00021447251,1.3433365e-7,0.004009028,0.0000010380511,0.9927293,0.0005215933],"about_ca_topic_score_codex":0.000087824774,"about_ca_topic_score_gemma":0.0030468442,"teacher_disagreement_score":0.96966845,"about_ca_system_score_codex":0.00022849096,"about_ca_system_score_gemma":0.00006691469,"threshold_uncertainty_score":0.99980265},"labels":[],"label_agreement":null},{"id":"W4411223770","doi":"10.1016/j.tim.2025.04.018","title":"Microbial inoculants and invasions: a call to action","year":2025,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biological and Environmental Research; Canadian Institute for Advanced Research; U.S. Department of Energy; Office of Science; Defense Threat Reduction Agency; National Science Foundation","keywords":"Microbial inoculant; Biology; Call to action; Microbiology; Action (physics); Ecology; Bacteria; Genetics","score_opus":0.0755757723324724,"score_gpt":0.35240442494959906,"score_spread":0.27682865261712664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411223770","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004558582,0.98893523,0.000006936776,0.00018401904,0.00088063575,0.00073757104,0.00031252048,0.0000580976,0.0043263813],"genre_scores_gemma":[0.00015444381,0.9946568,0.0003435879,0.0007078925,0.000038406066,0.00007412236,0.00089709606,0.00002047104,0.0031071827],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99740154,0.0009393309,0.0005160614,0.00064759696,0.000018349034,0.00047711452],"domain_scores_gemma":[0.9989678,0.00034484346,0.00014791166,0.0004593381,0.0000044532776,0.00007563914],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00028974854,0.00040628767,0.0013331899,0.0005225521,0.00013914217,0.000010412139,0.00056650635,0.00087658805,0.003023502],"category_scores_gemma":[0.00006400073,0.0003637549,0.00015873206,0.0007315388,0.00030534758,0.000040789004,0.0012886436,0.0008198373,0.0006757901],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026582597,0.00009865506,0.00008116593,0.00072939147,0.000041379462,0.000013144786,0.00014683335,0.0000039471333,0.0037742958,0.000014228004,0.043662205,0.95140815],"study_design_scores_gemma":[0.00020113877,0.00009111086,0.00015655624,0.0009559825,0.000087030516,0.00014800533,0.0000060291227,1.9970106e-7,0.000013864001,0.00003828856,0.9979804,0.00032139284],"about_ca_topic_score_codex":0.00047819506,"about_ca_topic_score_gemma":0.014949964,"teacher_disagreement_score":0.95431817,"about_ca_system_score_codex":0.00026908756,"about_ca_system_score_gemma":0.00004717238,"threshold_uncertainty_score":0.99988145},"labels":[],"label_agreement":null},{"id":"W4411372957","doi":"10.1016/j.tim.2025.06.001","title":"Large-scale microbiome data initiatives call for diversity","year":2025,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microbiome; Scale (ratio); Diversity (politics); Computational biology; Evolutionary biology; Data science; Environmental resource management; Genetics; Cartography; Computer science; Political science","score_opus":0.029615600178514875,"score_gpt":0.335330303969586,"score_spread":0.30571470379107113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411372957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98196715,0.001990893,0.004192213,0.0015850547,0.0008257434,0.00041325044,0.005558929,0.000035430676,0.0034313507],"genre_scores_gemma":[0.9768684,0.00021487725,0.003057018,0.0022427852,0.000112234105,0.000016931079,0.0124644805,0.000018565494,0.0050047],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984008,0.000104256935,0.00027515212,0.0006974043,0.000014668281,0.0005077337],"domain_scores_gemma":[0.99911404,0.000029908417,0.000074254014,0.0006883856,0.000052180287,0.000041248335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003463925,0.0001913763,0.00027890818,0.00025478099,0.0001955549,0.000009799542,0.0007156921,0.00032752226,0.000048702866],"category_scores_gemma":[0.000033313932,0.00019319468,0.000079414465,0.00024290085,0.00014883418,0.0000069722046,0.0015959643,0.00013605507,0.000010061557],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017347239,0.00017737877,0.010298117,0.0000377375,0.00004982481,0.0000016059826,0.00019804192,0.000001930425,0.9112318,0.00014452107,0.076544054,0.0011415066],"study_design_scores_gemma":[0.0051055364,0.0003777149,0.04822097,0.000050404014,0.00006528626,0.00003109229,0.00033702186,0.00003815988,0.07209399,0.00014029449,0.8729842,0.00055534235],"about_ca_topic_score_codex":0.000043221316,"about_ca_topic_score_gemma":0.0021695676,"teacher_disagreement_score":0.8391378,"about_ca_system_score_codex":0.00003704459,"about_ca_system_score_gemma":0.00009143349,"threshold_uncertainty_score":0.78782505},"labels":[],"label_agreement":null},{"id":"W4411920411","doi":"10.1016/j.tim.2025.06.003","title":"Balancing act: thiol-based redox regulation drives fungal pathogenesis","year":2025,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Redox biology and oxidative stress","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; National Institutes of Health; University of British Columbia; Canadian Institute for Advanced Research","keywords":"Biology; Context (archaeology); Pathogenesis; Oxidative stress; Redox; Intracellular; Cell biology; Thiol; Signal transduction; Biochemistry; Immunology; Chemistry","score_opus":0.014631350570790047,"score_gpt":0.31260897659229886,"score_spread":0.2979776260215088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411920411","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00082511315,0.9955823,0.00014200079,0.000038274746,0.00059798267,0.00029149585,0.00050673983,0.00002876573,0.001987356],"genre_scores_gemma":[0.0018954921,0.9807856,0.00058917777,0.0001389789,0.00029337712,0.00012936338,0.012621768,0.000046661116,0.0034995773],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966926,0.0009208732,0.0007300955,0.0010790684,0.000037634847,0.0005397364],"domain_scores_gemma":[0.9986307,0.0001405706,0.00039438525,0.00072176266,0.00005951925,0.00005305861],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00035198528,0.0006182375,0.0013721539,0.00059112714,0.00010046965,0.000014136852,0.0005494492,0.0017370064,0.00012800921],"category_scores_gemma":[0.00012486173,0.00052276294,0.0005442458,0.00048093777,0.00026916628,0.000003317976,0.00023133276,0.00040754932,0.000022014003],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079827594,0.0000882006,0.0007095755,0.0018129823,0.0002113073,0.000021292602,0.000013550674,0.000016872611,0.045715764,0.000058464608,0.003042549,0.9482296],"study_design_scores_gemma":[0.0005222859,0.00019086165,0.000767767,0.002263195,0.00023112488,0.000060291495,0.000006631946,0.000002231726,0.004463063,0.000014619942,0.9908541,0.0006238583],"about_ca_topic_score_codex":0.0000073937586,"about_ca_topic_score_gemma":0.00012255147,"teacher_disagreement_score":0.9878115,"about_ca_system_score_codex":0.0000702681,"about_ca_system_score_gemma":0.0003288358,"threshold_uncertainty_score":0.9997224},"labels":[],"label_agreement":null},{"id":"W4412196730","doi":"10.1016/j.tim.2025.06.016","title":"Scientific mobility in microbiology","year":2025,"lang":"en","type":"editorial","venue":"Trends in Microbiology","topic":"Zoonotic diseases and public health","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Microbiology; Computational biology","score_opus":0.015495192798649202,"score_gpt":0.33727708724725014,"score_spread":0.32178189444860095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412196730","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03341353,0.0026771447,0.0000040274285,0.0016020575,0.94794834,0.00058734935,0.0030551385,0.00008580338,0.01062663],"genre_scores_gemma":[0.06078465,0.0007329102,0.0010296523,0.0023222994,0.6698632,0.00042568977,0.12027808,0.00019813364,0.14436537],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99570066,0.000510419,0.0011268691,0.0014735146,0.00008471471,0.0011038148],"domain_scores_gemma":[0.9975744,0.00075699406,0.00021790803,0.001044983,0.00022079202,0.00018492062],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016352899,0.00048764973,0.001558355,0.002180955,0.00006836782,0.000037491685,0.0004920596,0.002296434,0.0018373709],"category_scores_gemma":[0.0011161946,0.00044164597,0.00026772622,0.0013774963,0.000692311,0.00003949054,0.00026756414,0.0019191062,0.00009647831],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004662964,0.0008227144,0.0008354006,0.00046088154,0.000048611295,0.00010127566,0.00010366794,0.0000019602921,0.0022148257,0.00006839335,0.98115927,0.013716721],"study_design_scores_gemma":[0.0027320262,0.00031889655,0.00072178023,0.00036371857,0.00006261154,0.000025008187,0.000044012802,0.000005370911,0.000038795322,0.00010000572,0.9952874,0.00030034615],"about_ca_topic_score_codex":0.0008189622,"about_ca_topic_score_gemma":0.003490036,"teacher_disagreement_score":0.2780851,"about_ca_system_score_codex":0.0007853236,"about_ca_system_score_gemma":0.002951962,"threshold_uncertainty_score":0.99980354},"labels":[],"label_agreement":null},{"id":"W4412570799","doi":"10.1016/j.tim.2025.06.012","title":"Scientific mobility in microbiology – 5","year":2025,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","funders":"","keywords":"Biology; Microbiology; Computational biology","score_opus":0.012842649314624813,"score_gpt":0.27000151217419893,"score_spread":0.2571588628595741,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412570799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821054,0.00012453538,0.0000106282405,0.00068900123,0.00078229187,0.00014823716,0.0000404013,0.000031799416,0.01606772],"genre_scores_gemma":[0.9937244,0.000009026969,0.00024529806,0.0008873657,0.000008645709,0.00002652816,0.00036422606,0.0000070974766,0.0047274223],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9973374,0.000812952,0.000477511,0.0006880037,0.000013905398,0.0006702546],"domain_scores_gemma":[0.9990225,0.00022299818,0.00007583985,0.0006366367,0.000009089108,0.000032970107],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009003884,0.00022140364,0.00043262218,0.00051729934,0.00017161555,0.000012634524,0.00076578703,0.0004474133,0.011022109],"category_scores_gemma":[0.00006213093,0.00021900459,0.00008123044,0.0013721538,0.0017473822,0.00007590738,0.0007713171,0.0006328814,0.00060440163],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009614234,0.00045168813,0.102780156,0.0000065529835,0.000009130977,0.000009433563,0.0002819447,0.00024375468,0.8706541,0.0004363623,0.02093399,0.004096762],"study_design_scores_gemma":[0.003035037,0.00027029234,0.5401771,0.000042771844,0.000018918976,0.00009506537,0.00016303563,0.00008382279,0.024171852,0.009364949,0.4218182,0.0007589585],"about_ca_topic_score_codex":0.0007760949,"about_ca_topic_score_gemma":0.056279972,"teacher_disagreement_score":0.8464822,"about_ca_system_score_codex":0.0003191816,"about_ca_system_score_gemma":0.00003327641,"threshold_uncertainty_score":0.98988193},"labels":[],"label_agreement":null},{"id":"W4413033694","doi":"10.1016/j.tim.2025.07.006","title":"Hypermutator fungal pathogens: from threat to meltdown","year":2025,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Canadian Institute for Advanced Research","keywords":"Biology; Somatic hypermutation; Adaptation (eye); Genetics; Transposable element; RNA interference; Evolvability; Phenotype; Evolutionary biology; Gene; RNA; Genome","score_opus":0.03373134902238095,"score_gpt":0.29645388610945383,"score_spread":0.2627225370870729,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413033694","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034960974,0.982319,2.0697819e-7,0.00010823048,0.00024687307,0.00022331349,0.012857746,0.00004102194,0.0007075173],"genre_scores_gemma":[0.0000892728,0.9888837,0.00007607936,0.00028490013,0.00023929261,0.00007079784,0.008873793,0.0000021752062,0.0014800132],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99802285,0.00025423724,0.00047646207,0.0007204095,0.000046009383,0.0004800433],"domain_scores_gemma":[0.9992376,0.00038147395,0.00011002246,0.0001408598,0.00002051627,0.000109559],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009184808,0.00041938334,0.0013578819,0.00010625338,0.00006590948,0.00002623439,0.00055599236,0.0005293268,0.0007716051],"category_scores_gemma":[0.000025977235,0.00016015838,0.00039387497,0.0008270057,0.000049930863,0.00001577955,0.00018315665,0.0002360966,0.00025970212],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001366967,0.000048852555,0.000053851796,0.00019137494,0.000047107103,0.00006981466,0.000008645479,1.6298523e-7,0.0025688952,0.000009767195,0.006643459,0.9903444],"study_design_scores_gemma":[0.00006295393,0.000055232616,0.00046796942,0.0015730395,0.00018569952,0.000018928078,0.000011473477,6.3425674e-8,0.000021002726,0.000042986972,0.9972048,0.0003558936],"about_ca_topic_score_codex":0.000093885574,"about_ca_topic_score_gemma":0.0025571005,"teacher_disagreement_score":0.9905613,"about_ca_system_score_codex":0.00007336227,"about_ca_system_score_gemma":0.000041503325,"threshold_uncertainty_score":0.8448535},"labels":[],"label_agreement":null},{"id":"W4413837496","doi":"10.1016/j.tim.2025.08.009","title":"Scientific mobility in microbiology – 8","year":2025,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Microbiology; Clinical microbiology; Computational biology","score_opus":0.012847152184231811,"score_gpt":0.2700074708744373,"score_spread":0.2571603186902055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413837496","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98200005,0.00012469476,0.000010648618,0.0006898719,0.0007821678,0.00014821057,0.000040309136,0.00003160334,0.016172463],"genre_scores_gemma":[0.9936814,0.000008932241,0.00024535556,0.00088738557,0.000008642613,0.000026525315,0.00036271082,0.000007088158,0.0047719716],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9973373,0.0008129687,0.00047751036,0.0006879869,0.000013902874,0.00067033124],"domain_scores_gemma":[0.9990224,0.00022304324,0.00007584141,0.0006366343,0.000009090976,0.000032970813],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009003992,0.00022141215,0.00043262378,0.0005171993,0.00017161084,0.00001263887,0.0007657743,0.00044739712,0.011027502],"category_scores_gemma":[0.000062136634,0.00021901427,0.000081225786,0.0013714352,0.0017474728,0.00007590452,0.0007712037,0.00063291367,0.00060881744],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009636478,0.00045270313,0.102426596,0.000006569297,0.00000915387,0.0000094569405,0.0002829063,0.00024476714,0.87099403,0.00043497802,0.02088263,0.0041598594],"study_design_scores_gemma":[0.0030507783,0.00027219063,0.535367,0.000043011947,0.0000190192,0.000095575975,0.00016384028,0.000084834384,0.024599362,0.009458322,0.426083,0.0007630531],"about_ca_topic_score_codex":0.0007752157,"about_ca_topic_score_gemma":0.05624633,"teacher_disagreement_score":0.84639466,"about_ca_system_score_codex":0.000319217,"about_ca_system_score_gemma":0.000033289227,"threshold_uncertainty_score":0.98987657},"labels":[],"label_agreement":null},{"id":"W4413974918","doi":"10.1016/j.tim.2025.08.011","title":"Scientific mobility in microbiology – 7","year":2025,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Microbiology; Computational biology","score_opus":0.012865324957957586,"score_gpt":0.2700629529344082,"score_spread":0.2571976279764506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413974918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821042,0.00012462487,0.0000106413945,0.0006892322,0.00078242563,0.00014822296,0.000040424347,0.00003180052,0.016068418],"genre_scores_gemma":[0.99372095,0.000009042886,0.0002452645,0.0008874363,0.000008647281,0.000026508196,0.00036653288,0.0000070988563,0.0047285436],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99733734,0.00081277906,0.0004775184,0.00068806915,0.00001390557,0.0006703646],"domain_scores_gemma":[0.99902254,0.00022286379,0.00007583746,0.00063666306,0.00000909036,0.000032973046],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00090037304,0.00022141797,0.0004326267,0.0005173315,0.00017161918,0.000012640423,0.0007658629,0.00044740312,0.010883592],"category_scores_gemma":[0.00006154676,0.0002190239,0.000081226404,0.0013721632,0.0017476165,0.00007591587,0.0007713709,0.0006329308,0.0006055447],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096117095,0.00045164622,0.10269255,0.000006603962,0.000009130995,0.000009433309,0.00028225442,0.00024407549,0.871098,0.00043529138,0.02055823,0.0041166674],"study_design_scores_gemma":[0.0030519834,0.0002721955,0.5344687,0.000043387325,0.000019024554,0.00009557609,0.00016384255,0.000084797015,0.024398573,0.0094581805,0.42718044,0.000763293],"about_ca_topic_score_codex":0.0007765268,"about_ca_topic_score_gemma":0.05630154,"teacher_disagreement_score":0.8466994,"about_ca_system_score_codex":0.0003192313,"about_ca_system_score_gemma":0.00003328605,"threshold_uncertainty_score":0.9900206},"labels":[],"label_agreement":null},{"id":"W4416050092","doi":"10.1016/j.tim.2025.10.011","title":"Toward a Yanomami framework for ethical microbiome research","year":2025,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Indigenous Studies and Ecology","field":"Health Professions","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canada Research Chairs","keywords":"Indigenous; Microbiome; Research ethics; Ethical issues; Key (lock); Amazon rainforest; Grounded theory; Gut microbiome","score_opus":0.1904221777995552,"score_gpt":0.5424530196511995,"score_spread":0.35203084185164435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416050092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6766784,0.003240593,0.0061569447,0.20489253,0.012855646,0.004573526,0.00071565603,0.00033354643,0.09055314],"genre_scores_gemma":[0.9502477,0.00018277744,0.011307564,0.01477717,0.00050052244,0.0015237436,0.0002667473,0.000044585624,0.021149207],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99547195,0.0011729463,0.0006280137,0.0005348737,0.00003219476,0.0021600206],"domain_scores_gemma":[0.9956162,0.003597578,0.00008429661,0.00035465774,0.0003013786,0.000045901186],"candidate_categories":["sts","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0031379054,0.00017844663,0.0005493008,0.0009176075,0.0021010507,0.000004943145,0.00041704776,0.001990928,0.0009329262],"category_scores_gemma":[0.0007329882,0.0001581797,0.000107667984,0.00096687174,0.0003999994,0.00001325392,0.0005925866,0.003137636,0.00034159087],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010358769,0.00039715064,0.02653948,0.00065944623,0.00024716352,0.000030860403,0.05334611,0.0000034338839,0.036865767,0.42830458,0.44366556,0.008904564],"study_design_scores_gemma":[0.0023104588,0.00049517176,0.0068545206,0.00023051616,0.000022416625,0.00000868303,0.013578885,0.0000078000285,0.0003209512,0.040359143,0.9355164,0.00029504293],"about_ca_topic_score_codex":0.0007845996,"about_ca_topic_score_gemma":0.013222914,"teacher_disagreement_score":0.49185082,"about_ca_system_score_codex":0.0006331259,"about_ca_system_score_gemma":0.00046005062,"threshold_uncertainty_score":0.99998033},"labels":[],"label_agreement":null}]}