{"meta":{"query_hash":"3812455cec84","filters":{"venue":"Tuberculosis"},"cohort_total":44,"direct_labels_cover":0,"predictions_cover":44,"exported":44,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/3812455cec84","api":"https://metacan.xera.ac/api/v1/cohort?venue=Tuberculosis"},"results":[{"id":"W1578664488","doi":"10.1016/j.tube.2015.05.001","title":"Cytokine and chemokine expression profiles in response to Mycobacterium tuberculosis stimulation are altered in HIV-infected compared to HIV-uninfected subjects with active tuberculosis","year":2015,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; Health Canada; Government of Canada; University of Manitoba","keywords":"Mycobacterium tuberculosis; Tuberculosis; Immune system; Immunology; Chemokine; Cytokine; Virology; Medicine; Coinfection; Biology; Human immunodeficiency virus (HIV); Pathology","score_opus":0.02878675758720299,"score_gpt":0.30805896888635637,"score_spread":0.27927221129915336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1578664488","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9730621,0.00013287071,0.00014041578,0.021924136,0.000113555696,0.0036903855,0.00027502168,0.00028169018,0.00037981741],"genre_scores_gemma":[0.99279696,0.000085759144,0.0032334046,0.0017566094,0.00022905975,0.00095780176,0.0006362574,0.00015957655,0.00014459275],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99271744,0.0016173532,0.0012613835,0.0017115204,0.0010295868,0.0016626937],"domain_scores_gemma":[0.99493253,0.000957443,0.00025771352,0.0011240226,0.0008026234,0.0019256701],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017772525,0.0009589363,0.0020386423,0.002424606,0.00014420394,0.000095566946,0.00030990317,0.00051972456,0.00016569241],"category_scores_gemma":[0.0045305355,0.0008090182,0.00016590861,0.0034153643,0.00018774068,0.00056446344,0.0004589539,0.0009837797,0.00020495008],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.033694148,0.00090639235,0.7006875,0.00023447801,0.00018821497,0.00017638785,0.002707566,0.001991279,0.25425175,0.000005249953,0.004336664,0.00082034006],"study_design_scores_gemma":[0.009445231,0.0016866109,0.93313485,0.0015839073,0.00015702216,0.00011620605,0.00089550484,0.002886581,0.048077255,0.00002112558,0.0011273408,0.00086838886],"about_ca_topic_score_codex":0.0016263583,"about_ca_topic_score_gemma":0.0016628433,"teacher_disagreement_score":0.2324473,"about_ca_system_score_codex":0.0014430527,"about_ca_system_score_gemma":0.00033573978,"threshold_uncertainty_score":0.9994361},"labels":[],"label_agreement":null},{"id":"W1878399872","doi":"10.1016/j.tube.2015.05.017","title":"Tuberculosis: A disease without boundaries","year":2015,"lang":"en","type":"review","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":326,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; University of Toronto","funders":"","keywords":"Tuberculosis; Disease; Medicine; Intensive care medicine; Epidemiology; Mycobacterium tuberculosis; Public health; Transmission (telecommunications); Immunology; Pathology","score_opus":0.08737347088508644,"score_gpt":0.40839748650669055,"score_spread":0.3210240156216041,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1878399872","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00005404982,0.9848927,0.000011354409,0.0030938783,0.0006084631,0.0029402315,0.00045324457,0.0005099168,0.0074361567],"genre_scores_gemma":[0.000060640574,0.9896599,0.00043351133,0.0015820063,0.001393952,0.0014791895,0.0017504519,0.00036617785,0.0032741632],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9918004,0.0011854152,0.0018748526,0.001793072,0.0014411239,0.00190512],"domain_scores_gemma":[0.9927579,0.00043018072,0.00044899373,0.0024109802,0.0005684159,0.0033835329],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["metaepi_narrow","insufficient_payload"],"category_scores_codex":[0.001842484,0.0015763065,0.0070611173,0.0009900916,0.00044350786,0.0003103856,0.00071344734,0.0010855903,0.00097052736],"category_scores_gemma":[0.0025187396,0.0011537658,0.0026254128,0.0012367985,0.0010870523,0.00026700203,0.00054567825,0.0020302567,0.004744525],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021097185,0.00048466338,0.0010002643,0.036728848,0.0030316056,0.0004972048,0.0000884796,4.9870187e-7,4.4098243e-7,0.00052209717,0.17544286,0.7819921],"study_design_scores_gemma":[0.0007723668,0.00032444406,0.00017286185,0.0131909605,0.009940491,0.0006094526,0.000026501491,0.000038952938,4.3367112e-7,0.00027968053,0.97360647,0.0010373672],"about_ca_topic_score_codex":0.00038570605,"about_ca_topic_score_gemma":0.000046144534,"teacher_disagreement_score":0.79816365,"about_ca_system_score_codex":0.0011853261,"about_ca_system_score_gemma":0.004881316,"threshold_uncertainty_score":0.9999427},"labels":[],"label_agreement":null},{"id":"W1964940270","doi":"10.1016/j.tube.2015.02.033","title":"Unusual spinal tuberculosis in an Avar Age skeleton (Csongrád-Felgyő, Ürmös-tanya, Hungary): A morphological and biomolecular study","year":2015,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Infectious Diseases and Tuberculosis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"European Social Fund; Hungarian Scientific Research Fund; European Commission","keywords":"Tuberculosis; Rib cage; Mycobacterium tuberculosis complex; Paleopathology; Sternum; Anatomy; Pathology; Meninges; Mycobacterium tuberculosis; Biology; Medicine","score_opus":0.03419770895818691,"score_gpt":0.3212255609440772,"score_spread":0.2870278519858903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964940270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923728,0.0012630271,0.000036780046,0.0011516192,0.00022991751,0.0017038271,0.000030435938,0.00030188475,0.00290967],"genre_scores_gemma":[0.9973279,0.00015251174,0.0003865473,0.0012698433,0.00028498183,0.00024527468,0.00010262934,0.000116685194,0.000113588474],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99518234,0.0005595335,0.0008687733,0.001393128,0.0009790228,0.001017193],"domain_scores_gemma":[0.99717456,0.000066537104,0.00014024995,0.0010430571,0.00029251238,0.0012830793],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009806535,0.0007333422,0.0011506372,0.00067144743,0.00020706872,0.00016379508,0.0002700878,0.0004031339,0.0002506711],"category_scores_gemma":[0.0003146651,0.0006467807,0.00032280423,0.0011719903,0.00028909408,0.0003922983,0.0002689352,0.00067629974,0.000157152],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018998885,0.009825568,0.9560367,0.00026683585,0.00066637015,0.0108708,0.0021110217,0.000027991959,0.007803502,0.00025986444,0.0016212114,0.008610246],"study_design_scores_gemma":[0.009624796,0.01336374,0.96577823,0.00026392622,0.0016196051,0.0013198254,0.003186687,0.0011191564,0.0012198446,0.00046078177,0.00078789686,0.0012555306],"about_ca_topic_score_codex":0.0031831025,"about_ca_topic_score_gemma":0.00063926534,"teacher_disagreement_score":0.00974151,"about_ca_system_score_codex":0.00044061805,"about_ca_system_score_gemma":0.00016961692,"threshold_uncertainty_score":0.9995983},"labels":[],"label_agreement":null},{"id":"W1965933682","doi":"10.1054/tube.2000.0253","title":"Comparative genomics of BCG vaccines","year":2001,"lang":"en","type":"review","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal General Hospital","funders":"","keywords":"BCG vaccine; Vaccination; Mycobacterium bovis; Tuberculosis; Genomics; Biology; Tuberculosis vaccines; Virology; Immunology; Mycobacterium tuberculosis; Medicine; Genetics; Genome; Gene","score_opus":0.13394787793852828,"score_gpt":0.42924095088608966,"score_spread":0.29529307294756135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965933682","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003559748,0.98589265,0.000011401624,0.00039258206,0.00014286558,0.0013117453,0.00011528155,0.000061558756,0.011715937],"genre_scores_gemma":[0.00006490014,0.9970385,0.00052189844,0.00022600773,0.00046044492,0.00016399013,0.00044792666,0.00007846686,0.0009978955],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964767,0.00047182402,0.0013836963,0.0006414352,0.0003343961,0.0006919091],"domain_scores_gemma":[0.9971741,0.000811719,0.00045673604,0.00091835763,0.00023998058,0.0003991317],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005707103,0.0006205386,0.0060464526,0.00055903307,0.00006389196,0.0000108051345,0.00035598045,0.00060434215,0.00097096147],"category_scores_gemma":[0.0003556464,0.0004447887,0.0013983693,0.0008662497,0.00016444255,0.000056384943,0.00018463733,0.0008201093,0.0007014449],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009070284,0.0004216317,0.00036074853,0.029101023,0.0034243285,0.0000884556,0.00012798066,0.000002183711,0.000018086957,0.00016307039,0.04980478,0.91639704],"study_design_scores_gemma":[0.00037278215,0.00031497673,0.00020896623,0.0054021683,0.0026792649,0.00047835716,0.000033219472,0.000023804272,0.000016446054,0.00003854645,0.9901002,0.00033123503],"about_ca_topic_score_codex":0.00025250262,"about_ca_topic_score_gemma":0.000033828535,"teacher_disagreement_score":0.94029546,"about_ca_system_score_codex":0.00031100647,"about_ca_system_score_gemma":0.00046871227,"threshold_uncertainty_score":0.9999423},"labels":[],"label_agreement":null},{"id":"W1975935823","doi":"10.1016/j.tube.2008.02.005","title":"Spontaneous transposition of IS1096 or ISMsm3 leads to glycopeptidolipid overproduction and affects surface properties in Mycobacterium smegmatis","year":2008,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Indo-French Centre for the Promotion of Advanced Research; Institut National de la Santé et de la Recherche Médicale","keywords":"Mycobacterium smegmatis; Operon; Gene; Locus (genetics); Biology; Genetics; Transposition (logic); Phenotype; Insertion sequence; Overproduction; Plasmid; Wild type; Gene cluster; Mycobacterium tuberculosis; Genome; Tuberculosis; Transposable element; Escherichia coli; Mutant","score_opus":0.02419644532631382,"score_gpt":0.2604135516208314,"score_spread":0.2362171062945176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975935823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955668,0.00040517942,0.0000075256708,0.0024433192,0.00011405692,0.00097085594,0.00004105018,0.000057090776,0.00039414526],"genre_scores_gemma":[0.9963664,0.0018099202,0.00069833983,0.00034849913,0.00014015123,0.0000615717,0.00003047703,0.00003365539,0.00051099627],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983698,0.000114456336,0.00032297676,0.00040575946,0.00039595255,0.00039102125],"domain_scores_gemma":[0.9991586,0.000092983784,0.000050576207,0.00031790906,0.000117267955,0.00026263235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020635182,0.00022310477,0.00050881214,0.00022601975,0.00007336235,0.000015917025,0.00007188883,0.00011536956,0.0003521321],"category_scores_gemma":[0.00020251995,0.00017322596,0.00007632839,0.00047252772,0.00011299284,0.00021718013,0.000036923404,0.00017701225,0.00004335278],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0053995047,0.0005393703,0.14746861,0.0013595115,0.00006583322,0.00087870675,0.003453272,0.000054020515,0.8362082,0.000007692596,0.0015814024,0.0029838448],"study_design_scores_gemma":[0.001491775,0.002093864,0.7174522,0.00083586754,0.00008868918,0.0031834554,0.00013812749,0.000079053,0.27397564,0.0000033845777,0.00039270782,0.00026522105],"about_ca_topic_score_codex":0.00084537547,"about_ca_topic_score_gemma":0.00033908838,"teacher_disagreement_score":0.5699836,"about_ca_system_score_codex":0.00013433011,"about_ca_system_score_gemma":0.00010744829,"threshold_uncertainty_score":0.706395},"labels":[],"label_agreement":null},{"id":"W1976188064","doi":"10.1016/j.tube.2006.01.023","title":"Genetic characterization of Mycobacterium tuberculosis clinical isolates with deletions in the plcA–plcB–plcC locus","year":2006,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Health Canada","funders":"","keywords":"Mycobacterium tuberculosis; Biology; Locus (genetics); Genetics; Virulence; Tuberculosis; genomic DNA; Gene; Polymerase chain reaction; Virology; Medicine","score_opus":0.020474672146410508,"score_gpt":0.3072735747200106,"score_spread":0.2867989025736001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976188064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98392475,0.0003443407,0.00030735898,0.012587239,0.00009500396,0.00089007674,0.00005978529,0.000060634848,0.0017307983],"genre_scores_gemma":[0.9951706,0.0012348838,0.00073153974,0.0017756602,0.00045554093,0.00017083634,0.00029443577,0.000050952785,0.00011553882],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9961683,0.00076141866,0.0012806953,0.0005914947,0.00046497706,0.0007331209],"domain_scores_gemma":[0.9978585,0.00062532583,0.00023923538,0.0008175706,0.00027498792,0.00018436101],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011853212,0.0003437497,0.0008882199,0.00034073225,0.000118507895,0.000033887067,0.00030094307,0.00031186827,0.00026638267],"category_scores_gemma":[0.00031219528,0.00021985442,0.00030606124,0.0009625224,0.00040120565,0.00015834173,0.00007300036,0.00062358263,0.00010314984],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050465594,0.0011249784,0.94283426,0.00018506362,0.00022482527,0.000058731097,0.00017332497,0.000052445885,0.048913673,0.00031948977,0.0019477499,0.003660796],"study_design_scores_gemma":[0.001410647,0.00087755756,0.99051607,0.0001514835,0.0002914069,0.0002087794,0.000081347105,0.0008074669,0.0014000088,0.00012592171,0.0038863758,0.00024291303],"about_ca_topic_score_codex":0.0018940271,"about_ca_topic_score_gemma":0.0006153155,"teacher_disagreement_score":0.047681823,"about_ca_system_score_codex":0.00009300415,"about_ca_system_score_gemma":0.000136423,"threshold_uncertainty_score":0.89654034},"labels":[],"label_agreement":null},{"id":"W1990200627","doi":"10.1016/j.tube.2010.02.004","title":"Mycobacterium africanum is not a major cause of human tuberculosis in Cape Town, South Africa","year":2010,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal","funders":"","keywords":"Cape; Mycobacterium tuberculosis; Tuberculosis; Mycobacterium tuberculosis complex; Biology; Restriction fragment length polymorphism; Mycobacterium; Geography; Genetics; Polymerase chain reaction; Medicine; Gene; Pathology","score_opus":0.03498571205558537,"score_gpt":0.31442353870968875,"score_spread":0.2794378266541034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990200627","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9736998,0.0002335741,0.000004723658,0.011394064,0.00026403548,0.00083782524,0.00022333526,0.00012369968,0.013218939],"genre_scores_gemma":[0.9950399,0.00014140134,0.0006733457,0.0020927642,0.0003540888,0.00021711594,0.000082352904,0.000097582924,0.0013014482],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99507695,0.00026798373,0.0013253909,0.0010281667,0.0008111625,0.0014903363],"domain_scores_gemma":[0.9966824,0.00038352283,0.0002629748,0.0015032106,0.00036582822,0.0008020422],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012144949,0.0005836589,0.0015476582,0.0009308298,0.00015584358,0.000035995483,0.00049584446,0.00061572075,0.004096635],"category_scores_gemma":[0.0011071722,0.0005046668,0.00055448455,0.0011855158,0.00047892236,0.00021588172,0.00031656644,0.0015251309,0.00031916983],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005647182,0.000971778,0.36833638,0.0004166678,0.0006849116,0.0001740392,0.007236178,0.0000017945263,0.6008839,0.00054340693,0.01876439,0.0014218481],"study_design_scores_gemma":[0.0051562423,0.0014895191,0.8661507,0.00030134319,0.0008549402,0.00021830447,0.0011533963,0.00037904122,0.107924975,0.00045136406,0.014780226,0.0011399579],"about_ca_topic_score_codex":0.002586989,"about_ca_topic_score_gemma":0.0010640203,"teacher_disagreement_score":0.49781433,"about_ca_system_score_codex":0.00017800434,"about_ca_system_score_gemma":0.00020697812,"threshold_uncertainty_score":0.9997405},"labels":[],"label_agreement":null},{"id":"W1994235548","doi":"10.1016/j.tube.2015.02.001","title":"Human tuberculosis predates domestication in ancient Syria","year":2015,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Medical Research Council","keywords":"Domestication; Tuberculosis; Geography; Archaeology; Biology; Ecology; Medicine; Pathology","score_opus":0.025757402347334875,"score_gpt":0.31677840433290966,"score_spread":0.2910210019855748,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994235548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943677,0.00048597707,0.00004081307,0.00062975084,0.00010500221,0.0003462954,0.000031043153,0.000029396011,0.0039640055],"genre_scores_gemma":[0.99815595,0.000066606386,0.00047848804,0.00020229437,0.00015202735,0.00009729254,0.00038411358,0.000035262674,0.00042794476],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998148,0.00016383751,0.0003207538,0.0005510598,0.0003301652,0.00048618639],"domain_scores_gemma":[0.99883574,0.000017095563,0.000060910497,0.00061796,0.00020789371,0.00026039642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054794655,0.00021529949,0.0002183873,0.00017584141,0.000070995455,0.00007082821,0.000330507,0.0002003096,0.00009030193],"category_scores_gemma":[0.00026981003,0.00021682383,0.00008291397,0.00036224182,0.00010501998,0.000016605749,0.00020876742,0.00015917346,0.0001807146],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007292947,0.00025486585,0.12642941,0.000035431178,0.000057254158,0.000009675492,0.00025262026,0.0001484446,0.86314017,0.00007489839,0.008818899,0.00070538383],"study_design_scores_gemma":[0.0022975942,0.0008512921,0.60800976,0.00007598873,0.00007205786,0.000070505776,0.00034117233,0.0009068224,0.37098464,0.00028618434,0.015248507,0.00085546763],"about_ca_topic_score_codex":0.000267374,"about_ca_topic_score_gemma":0.00029842975,"teacher_disagreement_score":0.49215555,"about_ca_system_score_codex":0.00013255795,"about_ca_system_score_gemma":0.00010941631,"threshold_uncertainty_score":0.8841819},"labels":[],"label_agreement":null},{"id":"W1996366418","doi":"10.1016/j.tube.2009.12.003","title":"Evaluation of 24 locus MIRU-VNTR genotyping of Mycobacterium tuberculosis isolates in Canada","year":2010,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; BC Centre for Disease Control; Institut National de Santé Publique du Québec; University of Manitoba; Saskatchewan Disease Control Laboratory; Health Sciences Centre; Canadian Science Centre for Human and Animal Health","funders":"Public Health Agency of Canada","keywords":"Genotyping; Locus (genetics); Typing; Biology; Genetics; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; Restriction fragment length polymorphism; Tuberculosis; Genotype; Medicine; Gene","score_opus":0.0287212604346671,"score_gpt":0.305903109475449,"score_spread":0.2771818490407819,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996366418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907749,0.0011203588,0.000007399535,0.003539805,0.00044954932,0.0007253331,0.00005874578,0.000019760459,0.0033041162],"genre_scores_gemma":[0.99828607,0.0005029278,0.0004996027,0.00037288576,0.0001271852,0.00008074837,0.000060036073,0.000040047387,0.000030470792],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9961187,0.00047772357,0.0011008111,0.0004892657,0.0011029439,0.00071052206],"domain_scores_gemma":[0.9971772,0.0004900524,0.00025117557,0.0007476852,0.001020853,0.00031303847],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0029145908,0.00029468365,0.0009856182,0.00042022183,0.0000483162,0.000007005652,0.00023792691,0.00024900105,0.0015313947],"category_scores_gemma":[0.0026146972,0.00026291623,0.00020874561,0.0006956601,0.00016287445,0.00014146803,0.00011004045,0.0006997627,0.000019699351],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029559253,0.00032168094,0.5316002,0.0005116915,0.0005595502,0.000013630574,0.00031533375,0.00026362808,0.42832765,0.00012939979,0.0029277278,0.034733936],"study_design_scores_gemma":[0.0025883738,0.00027854583,0.8891343,0.00028787716,0.00083031727,0.000075707474,0.0003242207,0.017010724,0.08719635,0.00040347848,0.0014895104,0.00038060313],"about_ca_topic_score_codex":0.79233515,"about_ca_topic_score_gemma":0.83904094,"teacher_disagreement_score":0.3575341,"about_ca_system_score_codex":0.00063851767,"about_ca_system_score_gemma":0.0023600517,"threshold_uncertainty_score":0.9999823},"labels":[],"label_agreement":null},{"id":"W2002275630","doi":"10.1016/j.tube.2015.02.003","title":"Langerhans cell histiocytosis or tuberculosis on a medieval child (Oppidum de la Granède, Millau, France – 10th–11th centuries AD)","year":2015,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Genital Health and Disease","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Sequestrum; Langerhans cell histiocytosis; Tuberculosis; Osteitis; Medicine; Differential diagnosis; Histiocytosis; Dermatology; Pathology; Osteomyelitis; Surgery","score_opus":0.017791608195496827,"score_gpt":0.288197052948675,"score_spread":0.2704054447531782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002275630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9161235,0.0098837195,0.000019784222,0.00968156,0.0005524686,0.0009021802,0.00030316116,0.00036251763,0.062171124],"genre_scores_gemma":[0.9863277,0.0008408467,0.0006591445,0.008324888,0.00052729144,0.00016996046,0.00014708414,0.000100473255,0.0029026226],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966501,0.00028067105,0.00052192376,0.0006670117,0.00089978136,0.0009805342],"domain_scores_gemma":[0.996626,0.00029427823,0.000121817815,0.00072799873,0.00021452879,0.0020153516],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005582635,0.000511655,0.0006926084,0.00026913793,0.0002583582,0.000052212024,0.00023619791,0.0003454385,0.00058798795],"category_scores_gemma":[0.0006130764,0.00040122864,0.00033076506,0.0005547679,0.00022611055,0.00012380122,0.000073984804,0.0005375314,0.0007321805],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.023964515,0.012214296,0.27292293,0.010664013,0.00094391993,0.002810588,0.017478561,0.00021429005,0.0038614317,0.00057501893,0.6038723,0.050478127],"study_design_scores_gemma":[0.025932603,0.0062462413,0.31851843,0.0015447674,0.0039189435,0.0009517662,0.0038390828,0.00090313476,0.033292167,0.0008766982,0.6009156,0.0030605807],"about_ca_topic_score_codex":0.0007048265,"about_ca_topic_score_gemma":0.00011999278,"teacher_disagreement_score":0.070204206,"about_ca_system_score_codex":0.00042434406,"about_ca_system_score_gemma":0.00056672306,"threshold_uncertainty_score":0.99984396},"labels":[],"label_agreement":null},{"id":"W2007005512","doi":"10.1016/j.tube.2013.01.001","title":"Increased mortality associated with treated active tuberculosis in HIV-infected adults in Tanzania","year":2013,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Population Health Research Institute; McMaster University","funders":"National Institute of Allergy and Infectious Diseases; Fogarty International Center; National Institutes of Health; Muhimbili University of Health and Allied Sciences","keywords":"Tuberculosis; Tanzania; Active tuberculosis; Human immunodeficiency virus (HIV); Medicine; Virology; Mycobacterium tuberculosis; Geography; Pathology","score_opus":0.017390321580999856,"score_gpt":0.2869626916616771,"score_spread":0.26957237008067725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007005512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98814386,0.00013247336,0.0000046218884,0.0034304305,0.00003308474,0.00228395,0.00010451609,0.00024056145,0.005626495],"genre_scores_gemma":[0.9962639,0.00023322557,0.00014005734,0.0013844614,0.000063317646,0.0009117425,0.00079328386,0.00009159927,0.00011840966],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99458104,0.0010866739,0.0010369747,0.001072215,0.0006915352,0.0015315835],"domain_scores_gemma":[0.99689907,0.0009270587,0.0002045129,0.00081185455,0.00045599643,0.0007015069],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00085370184,0.0006332471,0.0015743271,0.0009213336,0.000094235394,0.000042661188,0.00025631927,0.00057191064,0.001776307],"category_scores_gemma":[0.0027923353,0.0004984831,0.00024394125,0.00248542,0.00026673882,0.00047685407,0.0001126409,0.0011107589,0.00049552566],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009666411,0.0016844171,0.98800623,0.000086302374,0.0006336904,0.0002099899,0.00036175392,0.0000320909,0.004254559,0.000026226711,0.0017006672,0.0020374306],"study_design_scores_gemma":[0.0075575067,0.00070404453,0.98365664,0.00071319286,0.0002046531,0.000041130093,0.00029034092,0.0040195286,0.0021523014,0.000089138826,0.00005464108,0.000516906],"about_ca_topic_score_codex":0.07145342,"about_ca_topic_score_gemma":0.021491049,"teacher_disagreement_score":0.049962375,"about_ca_system_score_codex":0.0011429335,"about_ca_system_score_gemma":0.00022678473,"threshold_uncertainty_score":0.9997467},"labels":[],"label_agreement":null},{"id":"W2016224799","doi":"10.1016/j.tube.2015.02.010","title":"Tuberculosis infection in a late-medieval Hungarian population","year":2015,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Infectious Diseases and Tuberculosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"European Social Fund; Hungarian Scientific Research Fund; Centre National de la Recherche Scientifique; European Commission","keywords":"Mycobacterium tuberculosis complex; Tuberculosis; Paleopathology; Mycobacterium tuberculosis; Population; Biology; Pathology; Medicine","score_opus":0.02016595712246854,"score_gpt":0.28233061476321425,"score_spread":0.2621646576407457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016224799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798125,0.0003322535,0.000034469234,0.0018669453,0.0005643539,0.00071046426,0.000014116058,0.00030902115,0.016355855],"genre_scores_gemma":[0.9972552,0.0003966955,0.00019242009,0.0010473402,0.0004169013,0.00012369166,0.00023305953,0.00007140999,0.00026327686],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974725,0.00015849886,0.0005981372,0.00056553946,0.00062413386,0.0005811903],"domain_scores_gemma":[0.998532,0.000056123255,0.00010821937,0.00049886416,0.00023635452,0.0005684333],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005378915,0.00036174385,0.0005756442,0.0005867479,0.00011244872,0.00006135828,0.000074242525,0.00029813146,0.000357152],"category_scores_gemma":[0.00034644938,0.00034529337,0.0003156933,0.001028572,0.00005457762,0.0003692144,0.000070372436,0.00039746714,0.00043760316],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002651167,0.0007036547,0.98809665,0.00013682542,0.00016788686,0.000061915736,0.0005062021,0.0005287884,0.0002471843,0.00028129708,0.0015251214,0.007479369],"study_design_scores_gemma":[0.002942514,0.00039133342,0.98842365,0.00021219366,0.00047998165,0.00008716943,0.000063298794,0.0041319714,0.00029523167,0.0010333601,0.0015235172,0.00041578605],"about_ca_topic_score_codex":0.015969375,"about_ca_topic_score_gemma":0.0022383186,"teacher_disagreement_score":0.017442685,"about_ca_system_score_codex":0.0007964868,"about_ca_system_score_gemma":0.00012958463,"threshold_uncertainty_score":0.9998999},"labels":[],"label_agreement":null},{"id":"W2019066415","doi":"10.1016/j.tube.2005.06.001","title":"The search for a tuberculosis vaccine: An elusive quest?","year":2005,"lang":"en","type":"review","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Tuberculosis; Immunology; Immunity; Mycobacterium tuberculosis; Tuberculosis vaccines; Medicine; Disease; Immune system; Virology; Pathology","score_opus":0.07664610800043233,"score_gpt":0.43544141176175255,"score_spread":0.35879530376132024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019066415","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000091496666,0.9809281,0.000043462423,0.009233805,0.00046291001,0.006197861,0.00037613857,0.00028486518,0.0023813387],"genre_scores_gemma":[0.000032773027,0.98618513,0.0009606736,0.0016072057,0.0038088264,0.0035403706,0.0014057498,0.00039105891,0.002068223],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99078363,0.0016398049,0.0021043732,0.0018521406,0.0010115945,0.0026084664],"domain_scores_gemma":[0.990156,0.004479443,0.0003999366,0.0027413177,0.0007981529,0.0014251475],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0038190195,0.0013900967,0.004773269,0.0006938201,0.0010710568,0.00022083842,0.0013211332,0.0013970514,0.00039751257],"category_scores_gemma":[0.0018300299,0.0008429469,0.0029094734,0.0011370055,0.00031057015,0.0002889161,0.00043519205,0.0021796406,0.0009944127],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021064117,0.00033164863,0.000060398273,0.007578019,0.0020614264,0.000032190157,0.00007869815,0.000002527944,0.0000032689677,0.0010249305,0.04968162,0.9389346],"study_design_scores_gemma":[0.0009568208,0.0011058927,0.00013125551,0.0039867572,0.004111607,0.0005990543,0.00007894401,0.00025452973,0.00000961697,0.000072449126,0.98786294,0.00083014637],"about_ca_topic_score_codex":0.00046088296,"about_ca_topic_score_gemma":0.00042853045,"teacher_disagreement_score":0.9381813,"about_ca_system_score_codex":0.00107635,"about_ca_system_score_gemma":0.0012847272,"threshold_uncertainty_score":0.9998993},"labels":[],"label_agreement":null},{"id":"W2023849146","doi":"10.1016/j.tube.2004.02.002","title":"The Mycobacterium tuberculosis complex transcriptome of attenuation","year":2004,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; National Institutes of Health; McGill University","keywords":"Virulence; Mycobacterium tuberculosis; Biology; Transcriptome; Phenotype; Gene; Genetics; Tuberculosis; Mutant; Gene expression; Microbiology; Medicine","score_opus":0.03792383134949324,"score_gpt":0.31942470443447385,"score_spread":0.2815008730849806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023849146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9275519,0.0010223207,0.00027216595,0.06458386,0.00021945943,0.0007187532,0.000049141912,0.00011188604,0.005470478],"genre_scores_gemma":[0.9943912,0.0021983385,0.0008129643,0.0019452355,0.00021893923,0.00009774749,0.00011530077,0.00004456548,0.00017570832],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99720716,0.0002136479,0.0007903596,0.00042616233,0.0006062203,0.00075647444],"domain_scores_gemma":[0.9980548,0.0003655712,0.00014042879,0.00076083123,0.00034358967,0.00033475796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091217866,0.0002873821,0.0006629844,0.00018872351,0.0002921309,0.00002918878,0.00027384053,0.00019479918,0.0002831373],"category_scores_gemma":[0.00055734353,0.00019270349,0.0004469012,0.00058822316,0.0004504535,0.00014914019,0.00006524928,0.00038959977,0.00022955413],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014978683,0.001102623,0.085775316,0.00068335043,0.0018739523,0.000049225095,0.0014227626,0.00025788482,0.8458834,0.01164497,0.020084897,0.029723693],"study_design_scores_gemma":[0.0038557157,0.0010903407,0.92635685,0.00021011202,0.0005133943,0.00024576436,0.00041811948,0.00034392893,0.02683101,0.002299269,0.03741278,0.00042268747],"about_ca_topic_score_codex":0.00085871445,"about_ca_topic_score_gemma":0.00015142793,"teacher_disagreement_score":0.84058154,"about_ca_system_score_codex":0.000232231,"about_ca_system_score_gemma":0.0001467217,"threshold_uncertainty_score":0.78582203},"labels":[],"label_agreement":null},{"id":"W2024826544","doi":"10.1016/j.tube.2012.07.005","title":"Molecular mechanism of rifampicin and isoniazid resistance in Mycobacterium tuberculosis from Bangladesh","year":2012,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Hokkaido University; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Australian Agency for International Development; National Institutes of Health; Department for International Development, UK Government; Canadian International Development Agency; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"INHA; rpoB; Mycobacterium tuberculosis; Isoniazid; Rifampicin; Tuberculosis; Gene; Multiple drug resistance; Biology; Drug resistance; Gene mutation; Mutation; Virology; Genetics; Medicine; Microbiology; Pathology","score_opus":0.01664460009612439,"score_gpt":0.2851561956107259,"score_spread":0.2685115955146015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024826544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9800755,0.008872779,0.00011685296,0.0053970776,0.00015150671,0.00052961893,0.00009669162,0.000059371265,0.0047006393],"genre_scores_gemma":[0.99247056,0.0019178732,0.0034394444,0.0016305514,0.00018398382,0.000089146706,0.00008707636,0.0000601765,0.00012118159],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99678224,0.00039850874,0.00077489496,0.00056409376,0.00046143055,0.0010188497],"domain_scores_gemma":[0.9980257,0.0004282752,0.00014195198,0.0007035417,0.00012196199,0.0005785421],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009121919,0.0003710573,0.0010476308,0.00038446859,0.000056476063,0.000015037114,0.0001741792,0.00035923228,0.00039729956],"category_scores_gemma":[0.00065614766,0.00033558317,0.00021416064,0.00053802505,0.00019775552,0.0002612213,0.00017314838,0.0005047244,0.00006958307],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008692336,0.0008073608,0.6768335,0.00058071985,0.0006129331,0.00009108326,0.0015909857,0.0000028983834,0.29893294,0.015050606,0.002338081,0.0022896265],"study_design_scores_gemma":[0.0027406754,0.00029857445,0.9051131,0.00053479517,0.00040118964,0.000050417046,0.0003387386,0.000212514,0.08184611,0.0031343894,0.004772407,0.00055708684],"about_ca_topic_score_codex":0.001951846,"about_ca_topic_score_gemma":0.000368191,"teacher_disagreement_score":0.22827958,"about_ca_system_score_codex":0.00016823977,"about_ca_system_score_gemma":0.000058449878,"threshold_uncertainty_score":0.99990964},"labels":[],"label_agreement":null},{"id":"W2034427834","doi":"10.1016/j.tube.2015.02.004","title":"Three-dimensional imaging of past skeletal TB: From lesion to process","year":2015,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Paleopathology; Tuberculosis; Ancient DNA; Process (computing); Mycobacterium tuberculosis; Infectious disease (medical specialty); Pathology; Computer science; Biology; Disease; Medicine","score_opus":0.03601572661870726,"score_gpt":0.3221574762547927,"score_spread":0.2861417496360854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034427834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924891,0.0003851329,0.00010813732,0.005303683,0.00009518849,0.00031701208,0.00006003672,0.000047959275,0.0011937242],"genre_scores_gemma":[0.9972957,0.000007856518,0.0013987006,0.00081518805,0.00028862146,0.00004351635,0.00009059384,0.00002378442,0.00003609022],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984516,0.000026517953,0.0002420784,0.00029255167,0.0006869774,0.00030027714],"domain_scores_gemma":[0.9986012,0.00010197916,0.00004395948,0.00030121865,0.00036723574,0.0005844045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021816904,0.00014222357,0.00030629398,0.00014078572,0.000036936945,0.000015578036,0.000111992085,0.000049000988,0.0005024226],"category_scores_gemma":[0.0003285593,0.00011384835,0.000093324255,0.0002790921,0.000048057842,0.00011079701,0.00010259309,0.00013256753,0.0003302963],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045937503,0.0003941122,0.9096865,0.000116808806,0.000084515435,0.00006670237,0.00037703215,0.000015963662,0.025863282,0.000018454137,0.05048805,0.012429211],"study_design_scores_gemma":[0.002732077,0.0006483852,0.9240115,0.0006536031,0.00019565002,0.00003816259,0.00031948357,0.0014908012,0.06616458,0.00080378394,0.002596392,0.00034556296],"about_ca_topic_score_codex":0.001760922,"about_ca_topic_score_gemma":0.00008341317,"teacher_disagreement_score":0.047891658,"about_ca_system_score_codex":0.00006786037,"about_ca_system_score_gemma":0.00015634947,"threshold_uncertainty_score":0.5501175},"labels":[],"label_agreement":null},{"id":"W2038050878","doi":"10.1016/j.tube.2014.11.004","title":"Association of polymorphisms in drug transporter genes (SLCO1B1 and SLC10A1) and anti-tuberculosis drug-induced hepatotoxicity in a Chinese cohort","year":2014,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Drug Transport and Resistance Mechanisms","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Nanjing Medical University; Nanjing University; Natural Science Foundation of Beijing Municipality; National Natural Science Foundation of China; National Science Foundation","keywords":"SLCO1B1; Tuberculosis; Drug; Medicine; Gene; Pharmacology; Single-nucleotide polymorphism; Biology; Genetics; Genotype; Pathology","score_opus":0.004694274651606193,"score_gpt":0.21955241832894778,"score_spread":0.2148581436773416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038050878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957849,0.00067390094,0.000018283312,0.0020881959,0.0001183016,0.0007065921,0.000026555697,0.0000467303,0.0005365343],"genre_scores_gemma":[0.99753463,0.0015387716,0.00021968315,0.0002653392,0.00006591021,0.000057341273,0.000043475553,0.000043939963,0.0002308885],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976776,0.0001231509,0.00073898496,0.0005478784,0.00047452297,0.00043782598],"domain_scores_gemma":[0.99914527,0.00011671338,0.00017306383,0.00030625888,0.00007468732,0.00018401175],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010953601,0.00034665776,0.0010148466,0.00040576284,0.000056216424,0.000015850184,0.00009061225,0.0002253711,0.000053381384],"category_scores_gemma":[0.000044583405,0.00029144934,0.00014439014,0.0005499503,0.00006763579,0.00017040067,0.000020728901,0.00029854904,0.0000031558043],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097441865,0.00026699828,0.92251897,0.00025210824,0.000113017464,0.00002258362,0.0012877061,0.000003691952,0.07317001,0.000049604663,0.000022607377,0.002195265],"study_design_scores_gemma":[0.0020569945,0.000053259675,0.96076095,0.00029552952,0.00025691304,0.000010611699,0.00009732627,0.00046962383,0.035452317,0.00016734884,0.00008642349,0.00029270866],"about_ca_topic_score_codex":0.002714892,"about_ca_topic_score_gemma":0.006990239,"teacher_disagreement_score":0.038241975,"about_ca_system_score_codex":0.00012387757,"about_ca_system_score_gemma":0.000038417187,"threshold_uncertainty_score":0.99995375},"labels":[],"label_agreement":null},{"id":"W2040058525","doi":"10.1016/j.tube.2007.08.006","title":"Evaluation of a semi-automated reporter phage assay for susceptibility testing of Mycobacterium tuberculosis isolates in South Africa","year":2007,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Isoniazid; Mycobacterium tuberculosis; Tuberculosis; Microbiology; Agar; Medicine; Antibiotics; Agar plate; Mycobacterium tuberculosis complex; Biology; Veterinary medicine; Virology; Bacteria; Pathology","score_opus":0.05830513332724236,"score_gpt":0.34178788956128564,"score_spread":0.2834827562340433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040058525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940966,0.00039070594,0.00018544887,0.00014908961,0.00009297152,0.001947558,0.00013329725,0.00014039739,0.002863975],"genre_scores_gemma":[0.997274,0.000017614328,0.002206147,0.000041950167,0.00009408185,0.0001869379,0.00010672997,0.000045554643,0.000027014772],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9957926,0.00032071373,0.0014250932,0.00058917777,0.0011603399,0.0007120363],"domain_scores_gemma":[0.9947899,0.0014951214,0.00045813504,0.00071222405,0.0022799592,0.00026467684],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.011661179,0.0002945808,0.0008299651,0.0005433568,0.000053142947,0.00001905862,0.00014131881,0.0002480413,0.00035037243],"category_scores_gemma":[0.0112237865,0.0002628591,0.00029527702,0.0011752874,0.00012821873,0.00019183935,0.00008196865,0.00020360814,0.000007746961],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005328123,0.0008086243,0.6402622,0.0010557369,0.0002545626,0.000011949171,0.0018586258,0.0000334774,0.3493977,0.000004116207,0.00040941927,0.005370823],"study_design_scores_gemma":[0.0031079983,0.0008735145,0.7855723,0.0005976369,0.001029178,0.000021475984,0.000590876,0.030701917,0.17704773,0.00012470047,0.00005733047,0.00027536633],"about_ca_topic_score_codex":0.000375452,"about_ca_topic_score_gemma":0.0001728765,"teacher_disagreement_score":0.17234994,"about_ca_system_score_codex":0.00036120485,"about_ca_system_score_gemma":0.00034952068,"threshold_uncertainty_score":0.99998236},"labels":[],"label_agreement":null},{"id":"W2047596114","doi":"10.1016/j.tube.2006.01.017","title":"Use of recombinant virus-vectored tuberculosis vaccines for respiratory mucosal immunization","year":2006,"lang":"en","type":"review","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Tuberculosis vaccines; Virology; Medicine; Immunization; Mycobacterium tuberculosis; Immune system; Immunity; Virus; Vaccination; Tuberculosis; Immunology","score_opus":0.1317776835813929,"score_gpt":0.39331946293475195,"score_spread":0.26154177935335904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047596114","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013184351,0.99153346,0.000111193505,0.0004850154,0.0007820842,0.004615817,0.0006518013,0.00020474278,0.00029742398],"genre_scores_gemma":[0.000068944224,0.9912788,0.0016174417,0.0004434818,0.0006421957,0.0012744396,0.0034247062,0.0003522207,0.00089773646],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99262565,0.0011254407,0.0029927,0.0013026649,0.0006579949,0.0012955632],"domain_scores_gemma":[0.9930323,0.0026916107,0.0010595131,0.0018620812,0.00088559056,0.00046895645],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0014592372,0.0011925244,0.005939612,0.0014031203,0.00023247357,0.000063337575,0.0005408547,0.0014374604,0.00023352509],"category_scores_gemma":[0.003416957,0.0009388405,0.0027136656,0.0014738069,0.00022595312,0.00032548868,0.00027660036,0.0009532289,0.00011429563],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003689754,0.0010787137,0.001231233,0.04886247,0.0029252071,0.00003210035,0.000035241796,0.000010742129,0.0002670013,0.00033260847,0.15079929,0.7940564],"study_design_scores_gemma":[0.0010868228,0.00093980326,0.0017918147,0.0078923,0.005355703,0.00009267044,0.000007261196,0.00011817937,0.00012415735,0.00005659994,0.9817306,0.0008041038],"about_ca_topic_score_codex":0.002009396,"about_ca_topic_score_gemma":0.000251169,"teacher_disagreement_score":0.8309313,"about_ca_system_score_codex":0.00061055383,"about_ca_system_score_gemma":0.00073351583,"threshold_uncertainty_score":0.99985886},"labels":[],"label_agreement":null},{"id":"W2060131026","doi":"10.1016/j.tube.2007.05.016","title":"Rv1773 is a transcriptional repressor deleted from BCG-Pasteur","year":2007,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Repressor; Tuberculosis; Biology; Virology; Genetics; Computational biology; Medicine; Gene; Transcription factor","score_opus":0.009905288978679547,"score_gpt":0.2301406800305635,"score_spread":0.22023539105188397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060131026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96198106,0.026543953,0.001228186,0.0009108541,0.00091794867,0.00021007618,0.00015691746,0.00018367574,0.007867352],"genre_scores_gemma":[0.99536,0.00014445193,0.00007547935,0.0016660654,0.000012891414,0.00001741651,0.00028091008,0.000026547948,0.0024162442],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982946,0.00009556356,0.000469096,0.00046378613,0.00010188255,0.0005750506],"domain_scores_gemma":[0.99916875,0.00015311554,0.00009157737,0.00046610515,0.000107266875,0.000013193271],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004572552,0.00024971092,0.0003070201,0.00012672505,0.00030935858,0.000020246205,0.00033426724,0.00031657817,0.006209486],"category_scores_gemma":[0.000062345716,0.0002368963,0.0002514895,0.00024951025,0.00020976173,0.00014170259,0.000048586247,0.00036831037,0.0021932092],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029203133,0.0003404086,0.0017249398,0.000011049698,0.00039803222,0.000008627319,0.002901572,0.000005961983,0.946612,0.0008095677,0.0030780814,0.043817725],"study_design_scores_gemma":[0.0032424198,0.00015232853,0.21199797,0.000077011675,0.0002454432,0.00005608874,0.0016105763,0.000024709407,0.38534403,0.0010613442,0.39542112,0.00076695747],"about_ca_topic_score_codex":0.001279836,"about_ca_topic_score_gemma":0.000025017802,"teacher_disagreement_score":0.561268,"about_ca_system_score_codex":0.000049083672,"about_ca_system_score_gemma":0.000038768634,"threshold_uncertainty_score":0.9985837},"labels":[],"label_agreement":null},{"id":"W2061747821","doi":"10.1016/j.tube.2011.12.003","title":"BCG: Myths, realities, and the need for alternative vaccine strategies","year":2012,"lang":"en","type":"letter","venue":"Tuberculosis","topic":"Immune responses and vaccinations","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; Wellcome Trust","keywords":"Medicine; Vaccination; Tuberculosis; Odds ratio; BCG vaccine; Miliary tuberculosis; Pediatrics; Confidence interval; Tuberculous meningitis; Meningitis; Immunology; Internal medicine; Pathology","score_opus":0.016320110552149446,"score_gpt":0.2615916541091476,"score_spread":0.24527154355699815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061747821","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004187232,0.04359668,0.00027358532,0.94274044,0.002032407,0.0017446965,0.0009265443,0.00012091051,0.0043774825],"genre_scores_gemma":[0.15810736,0.012898544,0.0002171257,0.6568575,0.006232138,0.0028078961,0.0099527035,0.00036013182,0.1525666],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982043,0.00050460454,0.00037639285,0.0003126355,0.00004516681,0.0005568962],"domain_scores_gemma":[0.9975718,0.0016045301,0.00021827497,0.00045625874,0.00013624533,0.000012872092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045114857,0.00037150303,0.00060640957,0.00015100022,0.0004241339,0.00008184376,0.00032700738,0.00075891905,0.00053385354],"category_scores_gemma":[0.00011145759,0.00023717646,0.00025386282,0.00008783916,0.00018011857,0.00015065249,0.0001269996,0.0010196696,0.00009887589],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041354314,0.000021920543,0.000019276209,0.00010807525,0.0010811312,0.0000022819067,0.0011465697,6.091227e-7,0.0003001364,0.009570579,0.98545676,0.0018791024],"study_design_scores_gemma":[0.003142725,0.00008182216,0.00041454926,0.000048086127,0.0005807321,0.000101784826,0.0010993965,0.0000051780494,0.0004645467,0.0020490747,0.99170077,0.00031134163],"about_ca_topic_score_codex":0.0011938777,"about_ca_topic_score_gemma":0.000035553665,"teacher_disagreement_score":0.28588295,"about_ca_system_score_codex":0.00005385959,"about_ca_system_score_gemma":0.00007951852,"threshold_uncertainty_score":0.9671775},"labels":[],"label_agreement":null},{"id":"W2064493635","doi":"10.1016/j.tube.2004.01.001","title":"Strain-related virulence of the dominant Mycobacterium tuberculosis strain in the Canadian province of Manitoba","year":2004,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Manitoba Health; Health Sciences Centre; University of Manitoba; Health Canada; Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Strain (injury); Tuberculosis; Virulence; Mycobacterium tuberculosis; Microbiology; Biology; Lung; Mycobacterium; Inflammation; Medicine; Immunology; Pathology; Internal medicine; Gene; Genetics","score_opus":0.019312058148091962,"score_gpt":0.27643478075070355,"score_spread":0.2571227226026116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064493635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96257937,0.0004311598,0.0000044383883,0.030697666,0.00014419266,0.0013908243,0.00036167965,0.000016211507,0.0043744766],"genre_scores_gemma":[0.99749565,0.0003099025,0.00017113028,0.0017617106,0.00006323893,0.00007624421,0.0000445344,0.00003254995,0.000045032906],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963265,0.0005462885,0.0010154829,0.00047198657,0.0007133687,0.0009263713],"domain_scores_gemma":[0.99784005,0.00032824118,0.00023639832,0.0010776123,0.0002063015,0.0003113855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018380868,0.00032832782,0.0007523312,0.00034144035,0.0001810376,0.000019597746,0.00075064116,0.00032582012,0.00013692988],"category_scores_gemma":[0.00095963286,0.00019142816,0.0003807517,0.001040689,0.0007248563,0.00013272077,0.00010872144,0.0008373428,0.000036727954],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007388608,0.0023173776,0.49565554,0.0020420481,0.0013273245,0.000603518,0.007243882,0.0013104241,0.43977523,0.023475172,0.003220475,0.022290153],"study_design_scores_gemma":[0.0017189136,0.00044834756,0.979544,0.0005776676,0.00020378175,0.00021739787,0.0011528935,0.00009672961,0.013467126,0.0015059294,0.000821283,0.00024592844],"about_ca_topic_score_codex":0.30647025,"about_ca_topic_score_gemma":0.6576752,"teacher_disagreement_score":0.48388848,"about_ca_system_score_codex":0.0006227235,"about_ca_system_score_gemma":0.0013521615,"threshold_uncertainty_score":0.78062135},"labels":[],"label_agreement":null},{"id":"W2087704454","doi":"10.1016/j.tube.2015.02.022","title":"Evolutionary changes in the genome of Mycobacterium tuberculosis and the human genome from 9000 years BP until modern times","year":2015,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University","funders":"Rijksinstituut voor Volksgezondheid en Milieu","keywords":"Tuberculosis; Mycobacterium tuberculosis; Mycobacterium tuberculosis complex; Biology; Genome; Population; Ancient DNA; Evolutionary biology; Genetics; Gene; Medicine; Pathology; Environmental health","score_opus":0.03302883095210145,"score_gpt":0.2940317439247086,"score_spread":0.26100291297260714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087704454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9592268,0.009243779,0.000008864248,0.027156103,0.00006771138,0.0008065288,0.00015011246,0.00004089478,0.0032992314],"genre_scores_gemma":[0.9932803,0.002202182,0.00022771409,0.0032423788,0.0003841257,0.00017493518,0.0002394963,0.00004178924,0.0002070651],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99675894,0.0008801579,0.0005705306,0.0005263402,0.0006304152,0.0006336379],"domain_scores_gemma":[0.9979134,0.00064364285,0.0001372701,0.00086891284,0.00016426304,0.00027246357],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018477228,0.00030719908,0.0008547728,0.00027262684,0.00012409562,0.000032945605,0.0004397906,0.00022885381,0.00033916658],"category_scores_gemma":[0.00039524058,0.0001855062,0.00019731333,0.00044853662,0.0007604841,0.00012581074,0.0002675022,0.0005315299,0.0000804245],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006932331,0.00298276,0.61766744,0.001042795,0.00555784,0.00052607944,0.09416181,0.0007222975,0.20554766,0.0076320176,0.042771515,0.014455428],"study_design_scores_gemma":[0.0036183305,0.0003591823,0.9783725,0.000073253526,0.00035785072,0.00009143953,0.0016240188,0.0014943875,0.00014145294,0.0049922466,0.008603284,0.00027202014],"about_ca_topic_score_codex":0.0053527127,"about_ca_topic_score_gemma":0.00063158385,"teacher_disagreement_score":0.36070508,"about_ca_system_score_codex":0.00016093347,"about_ca_system_score_gemma":0.000101885664,"threshold_uncertainty_score":0.8091736},"labels":[],"label_agreement":null},{"id":"W2106656844","doi":"10.1016/j.tube.2015.02.011","title":"Tuberculosis in Late Neolithic-Early Copper Age human skeletal remains from Hungary","year":2015,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Infectious Diseases and Tuberculosis","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"European Social Fund; Hungarian Scientific Research Fund","keywords":"Osteology; Tuberculosis; Paleopathology; Chalcolithic; Archaeology; Medicine; Geography; Bronze Age; Pathology","score_opus":0.02399673991901109,"score_gpt":0.28298240776497735,"score_spread":0.25898566784596627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106656844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95877683,0.00092502875,0.000009236417,0.0021709686,0.00046610553,0.00081801397,0.00011357155,0.00036821692,0.03635201],"genre_scores_gemma":[0.9938638,0.00016060472,0.0003611777,0.0030569485,0.00082256057,0.00014254614,0.0004200172,0.00015404711,0.001018282],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9960188,0.00028124105,0.0008843708,0.0009900762,0.0008129989,0.0010125024],"domain_scores_gemma":[0.9973608,0.00013059813,0.00014500026,0.0010930288,0.00026195488,0.0010085931],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005410078,0.00063822145,0.0010552097,0.0004990347,0.00021034422,0.00012176671,0.0002724671,0.00047511785,0.0007698882],"category_scores_gemma":[0.00020316063,0.0006049133,0.00059481506,0.0008354436,0.00022410936,0.0003719146,0.0002052474,0.0008477191,0.00082550704],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038128436,0.0020055787,0.9644732,0.00020433254,0.0010613517,0.0015434353,0.0042202557,0.000103823346,0.007691108,0.0008172231,0.015252136,0.0022463126],"study_design_scores_gemma":[0.006282597,0.00090496556,0.9793659,0.00046851658,0.0011876638,0.0000728179,0.00038301636,0.00079295365,0.0012213592,0.0033703444,0.0048538344,0.0010960413],"about_ca_topic_score_codex":0.014859522,"about_ca_topic_score_gemma":0.0024727106,"teacher_disagreement_score":0.035333727,"about_ca_system_score_codex":0.00064960076,"about_ca_system_score_gemma":0.00019519764,"threshold_uncertainty_score":0.9999525},"labels":[],"label_agreement":null},{"id":"W2128612279","doi":"10.1016/j.tube.2010.01.001","title":"A mutation in Mycobacterium tuberculosis rpoB gene confers rifampin resistance in three HIV-TB cases","year":2010,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"rpoB; Mycobacterium tuberculosis; Tuberculosis; Rifampicin; Virology; Genotype; Biology; Genotyping; Drug resistance; Medicine; Microbiology; Gene; Antibiotics; Genetics; Pathology","score_opus":0.025534832179679626,"score_gpt":0.3090525289077879,"score_spread":0.2835176967281083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128612279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9687298,0.00072106277,0.00003992584,0.02374282,0.00032240877,0.0010697665,0.00009560559,0.00012756781,0.0051510604],"genre_scores_gemma":[0.99286336,0.0006432144,0.002978104,0.0021110177,0.00030950332,0.00039785993,0.00029886715,0.00008164868,0.00031645555],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9956324,0.0003571538,0.001113319,0.0010151612,0.000579614,0.0013023576],"domain_scores_gemma":[0.99729073,0.00082767603,0.0001567063,0.0009695346,0.00022610003,0.00052928174],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0014368914,0.0005024147,0.0010994982,0.000943054,0.00011252495,0.00005372418,0.00030403078,0.0005504609,0.0008541514],"category_scores_gemma":[0.0026653088,0.0004709786,0.00028038345,0.0011613402,0.00032342787,0.0003404646,0.00012857949,0.0014779707,0.00038374995],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015386039,0.000790053,0.8633926,0.0004260428,0.0002092804,0.002065596,0.0007479927,0.00003671201,0.11966482,0.0015335005,0.0061016763,0.0034931302],"study_design_scores_gemma":[0.003476333,0.00027805302,0.97878283,0.0002732693,0.00011559149,0.00047586262,0.00019079229,0.0011158661,0.007966832,0.0012086555,0.005542374,0.00057351484],"about_ca_topic_score_codex":0.0053329454,"about_ca_topic_score_gemma":0.07364075,"teacher_disagreement_score":0.11539026,"about_ca_system_score_codex":0.0003832351,"about_ca_system_score_gemma":0.00027835855,"threshold_uncertainty_score":0.9997742},"labels":[],"label_agreement":null},{"id":"W2137604157","doi":"10.1016/j.tube.2013.02.002","title":"Modulation of angiogenic factor VEGF by DNA-hsp65 vaccination in a murine CNS tuberculosis model","year":2013,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Vascular endothelial growth factor; Angiogenesis; Immunology; DNA vaccination; Tuberculosis; Mycobacterium tuberculosis; Vaccination; Biology; Central nervous system; Medicine; Antigen; Pathology; Cancer research; VEGF receptors; Internal medicine; Immunization","score_opus":0.02343785782932983,"score_gpt":0.30072327014266537,"score_spread":0.27728541231333553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137604157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98801094,0.00074088795,0.0004331665,0.0075901793,0.000057089936,0.0012084269,0.000091558824,0.000091953276,0.0017757724],"genre_scores_gemma":[0.99625134,0.00085093285,0.0009606834,0.0007544747,0.0000797977,0.0003115048,0.00029656268,0.00006309866,0.00043160503],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9967875,0.00023321353,0.0009726657,0.00063155853,0.00057583617,0.00079925614],"domain_scores_gemma":[0.99816555,0.0002678981,0.00018057875,0.0006532118,0.00035113769,0.00038160975],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043202637,0.00037011932,0.00088344637,0.0006648514,0.000067250454,0.000021866355,0.00022018082,0.000356737,0.0016566603],"category_scores_gemma":[0.0006683728,0.000330021,0.00036726918,0.00081934955,0.00007135368,0.00045852165,0.00011644183,0.000370863,0.0002502231],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030558274,0.0015655402,0.3279997,0.0006034488,0.0006269778,0.000009934611,0.0010274923,0.0026836148,0.59274656,0.00035480078,0.03661324,0.03546309],"study_design_scores_gemma":[0.0021484583,0.00037642728,0.71909934,0.00010714052,0.000115782634,0.000023387169,0.00009561673,0.2577245,0.018774834,0.00093082763,0.0002352056,0.0003684733],"about_ca_topic_score_codex":0.0032722552,"about_ca_topic_score_gemma":0.00020626155,"teacher_disagreement_score":0.57397175,"about_ca_system_score_codex":0.00037250703,"about_ca_system_score_gemma":0.00009438165,"threshold_uncertainty_score":0.9999152},"labels":[],"label_agreement":null},{"id":"W2139111007","doi":"10.1016/j.tube.2010.11.009","title":"The TB Structural Genomics Consortium: A decade of progress","year":2011,"lang":"en","type":"review","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service","keywords":"Tuberculosis; Structural genomics; Mycobacterium tuberculosis; Genomics; Computational biology; Structural biology; Biology; Data science; Computer science; Protein structure; Genome; Genetics; Medicine; Gene","score_opus":0.07587764251982469,"score_gpt":0.3914240864497974,"score_spread":0.3155464439299727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139111007","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00071425363,0.9944781,0.0000014437954,0.00056111603,0.0002653599,0.001781375,0.00010140901,0.000057735448,0.0020391953],"genre_scores_gemma":[0.00015907896,0.99789554,0.0005047732,0.00015707241,0.00033976315,0.00033380408,0.00014326102,0.000101440804,0.0003652944],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960055,0.000629978,0.0014670765,0.0006077253,0.00034507687,0.0009446813],"domain_scores_gemma":[0.9965095,0.0009762013,0.0006035064,0.0012455025,0.00024758722,0.0004176895],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000973629,0.00059068686,0.0031114994,0.0002462701,0.00020064224,0.00002492887,0.0006766102,0.00064170244,0.00025073715],"category_scores_gemma":[0.00082511664,0.0003184124,0.0012976022,0.00043224692,0.0009722954,0.000048923812,0.00029247467,0.001076858,0.000202403],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007495482,0.000044572604,0.0007753109,0.009202858,0.0015864404,0.00002251493,0.000058932066,3.943311e-8,0.0000014626509,0.0011487154,0.0064831716,0.980601],"study_design_scores_gemma":[0.00028019925,0.0002456981,0.0006702955,0.0029817424,0.0022785505,0.0005099322,0.000021853566,0.00001673097,0.000011022378,0.00015988843,0.9925325,0.00029161165],"about_ca_topic_score_codex":0.00019862279,"about_ca_topic_score_gemma":0.00004263959,"teacher_disagreement_score":0.9860493,"about_ca_system_score_codex":0.00024118525,"about_ca_system_score_gemma":0.0006929941,"threshold_uncertainty_score":0.9999268},"labels":[],"label_agreement":null},{"id":"W2151352241","doi":"10.1016/j.tube.2012.03.008","title":"A novel assay detecting recall response to Mycobacterium tuberculosis: Comparison with existing assays","year":2012,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"New South Wales Government; University of New South Wales; Australian Government","keywords":"Tuberculin; Medicine; Tuberculosis; Isoniazid; Kappa; QuantiFERON; Mycobacterium tuberculosis; Latent tuberculosis; Immunology; Internal medicine; IL-2 receptor; Immune system; Pathology; T cell; Mathematics","score_opus":0.0640794301486986,"score_gpt":0.3522913528720888,"score_spread":0.2882119227233902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151352241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96913546,0.0006523095,0.004437089,0.013605995,0.00033952942,0.0011829758,0.000040807532,0.00044603267,0.010159794],"genre_scores_gemma":[0.9695742,0.000040749157,0.02434674,0.004058021,0.000884434,0.0003488819,0.0000440466,0.0001574427,0.00054544106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99350387,0.0011329629,0.0010695411,0.0009394057,0.0009692111,0.002385027],"domain_scores_gemma":[0.9938809,0.0023692527,0.00023340888,0.0011253393,0.0004319745,0.0019591018],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0066242865,0.0006715834,0.0013869135,0.0006382077,0.00041422728,0.00008718537,0.00032830096,0.00041756558,0.00034031112],"category_scores_gemma":[0.007696537,0.0005339356,0.00032579256,0.0012768414,0.00016645945,0.00041908814,0.0003094217,0.0011773828,0.0008021929],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009032353,0.0013145969,0.48868278,0.00033037108,0.0009364985,0.000054218122,0.003070038,0.00011337062,0.47284323,0.0001159559,0.007105907,0.016400697],"study_design_scores_gemma":[0.0039508725,0.0031585316,0.88755333,0.0010874718,0.0008930188,0.00185359,0.0016824207,0.002367396,0.033804465,0.000012683394,0.062131364,0.0015048367],"about_ca_topic_score_codex":0.0008288245,"about_ca_topic_score_gemma":0.00013475872,"teacher_disagreement_score":0.43903875,"about_ca_system_score_codex":0.00068112,"about_ca_system_score_gemma":0.00017811886,"threshold_uncertainty_score":0.9999758},"labels":[],"label_agreement":null},{"id":"W2318024222","doi":"10.1016/j.tube.2016.03.011","title":"A quantitative adaptation of the Wayne test for pyrazinamide resistance","year":2016,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Grand Challenges Canada; The Academy of Sciences for the Developing World; Wellcome Trust","keywords":"Pyrazinamide; Mycobacterium tuberculosis; Tuberculosis; Sputum; Drug resistance; Microbiology; Medicine; Chromatography; Chemistry; Biology; Pathology","score_opus":0.049367403666042795,"score_gpt":0.3386495558810382,"score_spread":0.28928215221499537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2318024222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89730334,0.001010141,0.0055669528,0.09026109,0.00013691756,0.0013157965,0.00022055114,0.00005593245,0.004129261],"genre_scores_gemma":[0.99119145,0.0003088853,0.004273897,0.00064280897,0.00006306391,0.00016019528,0.0000065093172,0.000021933336,0.0033312358],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99873155,0.00010452788,0.00035112136,0.00025232157,0.00023490535,0.0003255539],"domain_scores_gemma":[0.99669296,0.002355807,0.00012479472,0.0004087863,0.000315998,0.00010163182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005440766,0.000121884426,0.00033870863,0.00007650014,0.000088375724,0.0000034265565,0.00014394805,0.000084069914,0.00006855355],"category_scores_gemma":[0.0073862257,0.000059721857,0.0002220007,0.00024872008,0.0002556678,0.00007620441,0.000041142157,0.00008571038,0.00003564652],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003280809,0.0006211687,0.2817157,0.00086135976,0.00062424276,0.0000071749755,0.00090446515,0.000023532897,0.5517546,0.045337047,0.084647685,0.030222243],"study_design_scores_gemma":[0.005533727,0.0023150826,0.8412152,0.0014366144,0.00042762115,0.000025573881,0.0006213277,0.0022868996,0.072920375,0.009414704,0.063406125,0.0003967603],"about_ca_topic_score_codex":0.0001413081,"about_ca_topic_score_gemma":0.0005894115,"teacher_disagreement_score":0.5594995,"about_ca_system_score_codex":0.000098600845,"about_ca_system_score_gemma":0.000096374446,"threshold_uncertainty_score":0.88425356},"labels":[],"label_agreement":null},{"id":"W2429719806","doi":"10.1016/j.tube.2016.05.015","title":"Efficacy of gene-therapy based on adenovirus encoding granulocyte-macrophage colony-stimulating factor in drug-sensitive and drug-resistant experimental pulmonary tuberculosis","year":2016,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"","keywords":"Granulocyte macrophage colony-stimulating factor; Immunology; Tuberculosis; Drug; Medicine; Myeloid; Antibiotics; Drug resistance; Mycobacterium tuberculosis; Granulocyte colony-stimulating factor; Granulocyte; Pharmacology; Colony-stimulating factor; Disease; Cytokine; Chemotherapy; Microbiology; Biology; Internal medicine; Haematopoiesis; Pathology","score_opus":0.01691804573408888,"score_gpt":0.29015030542329645,"score_spread":0.27323225968920756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2429719806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966982,0.0016096681,0.000025787804,0.00035502887,0.00006232165,0.0007359751,0.00017853953,0.000025868834,0.0003085835],"genre_scores_gemma":[0.9986404,0.0004616294,0.00019033994,0.0002779792,0.000103656464,0.00008958904,0.000046331712,0.000083609324,0.000106460706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971059,0.0004653113,0.0005067199,0.0008563329,0.00047188508,0.0005938544],"domain_scores_gemma":[0.99871,0.0002556975,0.0001408892,0.0005872458,0.000105836036,0.00020033467],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045191083,0.00042857009,0.00046000068,0.0002692572,0.00014840814,0.00002845161,0.00026404142,0.00018606475,0.000091401336],"category_scores_gemma":[0.000111624824,0.00034900146,0.00020656937,0.00028024937,0.0002318221,0.000015967713,0.0001099832,0.00017128786,0.000013026644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007886176,0.00046523396,0.009452532,0.0000236778,0.0000997233,0.000041417155,0.00026514425,0.00021249219,0.97410446,0.0000027101803,0.00004277872,0.007403624],"study_design_scores_gemma":[0.0035228427,0.0014835033,0.024560282,0.00012708761,0.000014240306,0.000003938927,0.0001405287,0.00046275914,0.969177,0.0000033708718,0.00008694559,0.00041746377],"about_ca_topic_score_codex":0.00025302716,"about_ca_topic_score_gemma":0.00012030029,"teacher_disagreement_score":0.015107751,"about_ca_system_score_codex":0.00015802223,"about_ca_system_score_gemma":0.00009530018,"threshold_uncertainty_score":0.99989617},"labels":[],"label_agreement":null},{"id":"W2754456074","doi":"10.1016/j.tube.2017.09.003","title":"Mechanisms of resistance against NITD-916, a direct inhibitor of Mycobacterium tuberculosis InhA","year":2017,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; National Institute of Technology Delhi; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation; DalCor Pharmaceuticals; Inha University","keywords":"INHA; Isoniazid; Mycobacterium tuberculosis; Tuberculosis; Drug resistance; Microbiology; Biology; Virology; Medicine; Pathology","score_opus":0.023404647342816432,"score_gpt":0.30535292348571286,"score_spread":0.2819482761428964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2754456074","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9311123,0.0010193748,0.00009399113,0.007990678,0.00040929575,0.00084148,0.00026348067,0.000103765735,0.058165636],"genre_scores_gemma":[0.9934215,0.0018937057,0.0022293956,0.0007461758,0.00022780446,0.00011037085,0.000077182216,0.00008473083,0.0012091144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958062,0.0003339719,0.0012764478,0.0007960403,0.00084980676,0.000937545],"domain_scores_gemma":[0.99528706,0.00042834005,0.0007461605,0.0023603882,0.00064317224,0.0005348645],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0014109649,0.00048889266,0.0017887194,0.00041746921,0.00033849743,0.000042951597,0.0006769453,0.00043012344,0.00033138934],"category_scores_gemma":[0.0034348574,0.00041930084,0.000698166,0.00033201728,0.000687806,0.00034069378,0.00042373838,0.0005153798,0.000094405324],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023336404,0.001271569,0.08482276,0.0029810793,0.0019489117,0.00015269886,0.0005947869,0.00001004917,0.8635697,0.0028669152,0.028537448,0.010910486],"study_design_scores_gemma":[0.004216771,0.001243357,0.42009827,0.002117519,0.00086447835,0.00004353092,0.00033513582,0.00026149003,0.5563362,0.0019501704,0.011627802,0.00090524746],"about_ca_topic_score_codex":0.00080200395,"about_ca_topic_score_gemma":0.00032039164,"teacher_disagreement_score":0.3352755,"about_ca_system_score_codex":0.00017527488,"about_ca_system_score_gemma":0.00020803064,"threshold_uncertainty_score":0.9998259},"labels":[],"label_agreement":null},{"id":"W2807074103","doi":"10.1016/j.tube.2018.06.004","title":"Detection of lipoarabinomannan in urine and serum of HIV-positive and HIV-negative TB suspects using an improved capture-enzyme linked immuno absorbent assay and gas chromatography/mass spectrometry","year":2018,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"Office of Polar Programs; National Institute of Allergy and Infectious Diseases; American Gastroenterological Association; Bill and Melinda Gates Foundation","keywords":"Lipoarabinomannan; Urine; Medicine; Sputum; Tuberculosis; Chromatography; Mycobacterium tuberculosis; Chemistry; Internal medicine; Pathology","score_opus":0.014685272310929653,"score_gpt":0.28158931120157843,"score_spread":0.2669040388906488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2807074103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959083,0.0018265113,0.00025858625,0.00089664926,0.000051648825,0.00069155166,0.00006811822,0.000032397613,0.00026621873],"genre_scores_gemma":[0.99682444,0.00094194734,0.0018922659,0.00012249478,0.00012477917,0.00001767457,0.0000209189,0.000038578673,0.000016917744],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99748975,0.00044292898,0.00064804347,0.0006088788,0.0002504906,0.0005599352],"domain_scores_gemma":[0.9984459,0.00035766495,0.00024535783,0.00036759485,0.00027317207,0.00031026933],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009619595,0.00032939384,0.00095064373,0.0007979957,0.00011199941,0.000020386033,0.00008848234,0.0002633019,0.000041617484],"category_scores_gemma":[0.00046241496,0.00028738062,0.00010336717,0.0006766041,0.0008177139,0.00024841254,0.00012207052,0.0004184203,0.0000015328353],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007149941,0.00026577746,0.15836447,0.0002921431,0.00035292405,0.000018677507,0.0014662878,0.0000021275503,0.8368784,0.00004790534,0.000017713812,0.0015785777],"study_design_scores_gemma":[0.0024170105,0.002108818,0.7393651,0.00026932688,0.00018817658,0.00016838784,0.0009507796,0.009780561,0.24413006,0.00038280667,0.000006729256,0.0002322592],"about_ca_topic_score_codex":0.003643274,"about_ca_topic_score_gemma":0.000940939,"teacher_disagreement_score":0.59274834,"about_ca_system_score_codex":0.0001249483,"about_ca_system_score_gemma":0.000059562088,"threshold_uncertainty_score":0.99995786},"labels":[],"label_agreement":null},{"id":"W2941442106","doi":"10.1016/j.tube.2019.04.003","title":"The role of low molecular weight thiols in Mycobacterium tuberculosis","year":2019,"lang":"en","type":"review","venue":"Tuberculosis","topic":"Phenothiazines and Benzothiazines Synthesis and Activities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"South African Medical Research Council","keywords":"Mycobacterium tuberculosis; Biochemistry; Ergothioneine; Small molecule; Reactive oxygen species; Oxidative stress; Biology; Biosynthesis; Tuberculosis; Immune system; Reactive nitrogen species; Chemistry; Enzyme; Antioxidant; Genetics","score_opus":0.010545768579038177,"score_gpt":0.2575600367011639,"score_spread":0.2470142681221257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2941442106","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004355606,0.99057025,0.000003389169,0.00006623565,0.00033449387,0.00068277004,0.00015914347,0.000012572262,0.003815522],"genre_scores_gemma":[0.0065549253,0.9920714,0.000032732125,0.00006076769,0.00034052168,0.00020322997,0.00021072317,0.000115403804,0.0004103105],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99717665,0.00031188625,0.000921178,0.0007078114,0.00030532558,0.0005771373],"domain_scores_gemma":[0.9980642,0.00013816624,0.00044759325,0.0011652113,0.00009872767,0.00008607797],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003852908,0.00067792897,0.0015662721,0.00014410794,0.00009734451,0.000073148374,0.00074574654,0.0006376611,0.000040040228],"category_scores_gemma":[0.000100313744,0.00044259243,0.0011196238,0.00031784462,0.00014386921,0.000010457185,0.00034144038,0.00034420425,0.000058342364],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004779016,0.00027500084,0.00025094356,0.00982936,0.0007949299,0.0000060297252,0.000047594556,0.0000065472054,0.027249279,0.00062428595,0.0006110321,0.96025723],"study_design_scores_gemma":[0.0001498239,0.0000881015,0.000051663916,0.0031853225,0.00047699385,0.000010917018,0.000048282353,0.00000684054,0.014871911,0.000098914286,0.98043066,0.0005805708],"about_ca_topic_score_codex":0.00006799813,"about_ca_topic_score_gemma":0.000032542932,"teacher_disagreement_score":0.97981966,"about_ca_system_score_codex":0.000049426355,"about_ca_system_score_gemma":0.00021720145,"threshold_uncertainty_score":0.9998026},"labels":[],"label_agreement":null},{"id":"W2998923716","doi":"10.1016/j.tube.2020.101899","title":"Comparative genomics shows differences in the electron transport and carbon metabolic pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension","year":2020,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Global Institute for Water Security","funders":"European Research Council; Medical Research Council; European and Developing Countries Clinical Trials Partnership; Research Councils UK","keywords":"Mycobacterium tuberculosis; Biology; Tuberculosis; Genetics; In silico; Lineage (genetic); Comparative genomics; Adaptation (eye); Gene; Mutation; Phenotype; Mycobacterium; Genomics; Genome; Bacteria","score_opus":0.04761099517448883,"score_gpt":0.2871745089628769,"score_spread":0.23956351378838805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998923716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98312944,0.00075287774,0.00007230975,0.014119444,0.000038450857,0.0014947951,0.00011828994,0.000038475642,0.00023593957],"genre_scores_gemma":[0.99475604,0.0010615614,0.000706278,0.0030399289,0.0001318554,0.00016474386,0.00009971162,0.00003294407,0.0000069492858],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9968087,0.00064568495,0.00069196,0.0007908922,0.00042208994,0.0006406872],"domain_scores_gemma":[0.99824554,0.00038286825,0.00012499458,0.0003670202,0.00020344807,0.000676137],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00061340205,0.00040549738,0.0012674098,0.00029277644,0.00009337839,0.000026371377,0.00020194432,0.00019002387,0.000018334022],"category_scores_gemma":[0.00029174789,0.0002912194,0.000109810186,0.00076735346,0.0001569386,0.00021597321,0.00008741772,0.00047016804,0.000006439407],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025310467,0.00038801064,0.22365268,0.000290045,0.00041283798,0.000035991285,0.09816064,0.00010141196,0.67209524,0.0003350226,0.00014342988,0.0018536762],"study_design_scores_gemma":[0.00083102594,0.0025718128,0.9775285,0.00009574809,0.00029711207,0.000029317876,0.004486155,0.004432081,0.009015777,0.00008094481,0.00030485098,0.0003266737],"about_ca_topic_score_codex":0.0017121403,"about_ca_topic_score_gemma":0.001436515,"teacher_disagreement_score":0.75387585,"about_ca_system_score_codex":0.00008811003,"about_ca_system_score_gemma":0.00010959022,"threshold_uncertainty_score":0.999954},"labels":[],"label_agreement":null},{"id":"W3046447525","doi":"10.1016/j.tube.2020.101978","title":"Mycobacterium tuberculosis-specific plasmablast levels are differentially modulated in tuberculosis infection and disease","year":2020,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; MicroResearch","keywords":"ELISPOT; Tuberculosis; Mycobacterium tuberculosis; Immunology; Medicine; Tuberculin; Biomarker; Immune system; Antibody; Latent tuberculosis; T cell; Biology; Pathology","score_opus":0.03942589354264898,"score_gpt":0.2842617598190785,"score_spread":0.2448358662764295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046447525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9480353,0.0015224286,0.0001536812,0.04764314,0.00025358365,0.0012291926,0.00022415971,0.00035694483,0.0005815621],"genre_scores_gemma":[0.98768264,0.0052653668,0.0002124241,0.005565597,0.00056429446,0.00021819837,0.00026080763,0.00014436821,0.000086304855],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99435085,0.0006204647,0.0012158867,0.0016326482,0.00076914753,0.0014109808],"domain_scores_gemma":[0.99576265,0.00034440125,0.00022315275,0.0007788002,0.00026579725,0.002625209],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005167662,0.00083482557,0.0015578265,0.00062135566,0.00024550242,0.00014182733,0.00023513207,0.00048685295,0.00091877946],"category_scores_gemma":[0.0014836536,0.00076645706,0.0004662875,0.001334383,0.0003276243,0.0005032151,0.00037451787,0.0011749225,0.00039386147],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021514436,0.0007884649,0.9308615,0.0012034045,0.00068162364,0.00042932204,0.00062700966,0.0003323132,0.04573571,0.00020733514,0.009956772,0.0070251487],"study_design_scores_gemma":[0.0032521344,0.00047172728,0.97801757,0.00042062675,0.0003320168,0.00008582386,0.000087172164,0.010293928,0.0014735408,0.00020251259,0.0046231854,0.0007397904],"about_ca_topic_score_codex":0.00059708586,"about_ca_topic_score_gemma":0.00025618132,"teacher_disagreement_score":0.047156088,"about_ca_system_score_codex":0.00036349773,"about_ca_system_score_gemma":0.00015969698,"threshold_uncertainty_score":0.9999945},"labels":[],"label_agreement":null},{"id":"W3048609924","doi":"10.1016/j.tube.2020.101983","title":"Efficient genome editing in pathogenic mycobacteria using Streptococcus thermophilus CRISPR1-Cas9","year":2020,"lang":"en","type":"article","venue":"Tuberculosis","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"European Research Council; Medical Research Council; H2020 European Research Council; Cancer Center Amsterdam; University of Arizona Cancer Center","keywords":"Streptococcus thermophilus; CRISPR; Genome editing; Biology; Cas9; Mycobacterium tuberculosis; Streptococcus pyogenes; Trans-activating crRNA; Computational biology; Mycobacterium; Genome; Gene; Genetics; Microbiology; Tuberculosis; Bacteria; Medicine","score_opus":0.013746783205690817,"score_gpt":0.2770399841911862,"score_spread":0.26329320098549536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048609924","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953387,0.0010202411,0.0027189602,0.00020434531,0.00015624045,0.00024182136,0.000034410747,0.000025875495,0.00025941542],"genre_scores_gemma":[0.9982019,0.000047822996,0.0006433079,0.0003034693,0.0006903173,0.000019680643,0.00004548782,0.000041159812,0.000006825869],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998775,0.000042413696,0.0002768053,0.00042974958,0.00012443119,0.00035160859],"domain_scores_gemma":[0.99951684,0.00000761501,0.000049072547,0.00025419917,0.000034277902,0.00013796263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116927215,0.00020599831,0.00019112379,0.000044976394,0.00005159384,0.00002686429,0.00016820336,0.00012273721,0.00007885591],"category_scores_gemma":[0.00006146458,0.00021529036,0.000116331576,0.0001839182,0.00002538805,0.000001863281,0.00015064295,0.000118857075,0.00001899325],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017786515,0.000026067719,0.0027950637,0.000035421574,0.000029836834,0.000011837561,0.00023838987,0.03628234,0.9597568,0.0000035216187,0.000028349617,0.0007745755],"study_design_scores_gemma":[0.0028261843,0.000600391,0.13971359,0.00012177931,0.00020043054,0.00007017946,0.0011076431,0.12010121,0.7256137,0.000020815221,0.007791175,0.0018329115],"about_ca_topic_score_codex":0.000024203468,"about_ca_topic_score_gemma":0.000009880332,"teacher_disagreement_score":0.23414312,"about_ca_system_score_codex":0.00002926131,"about_ca_system_score_gemma":0.000030620275,"threshold_uncertainty_score":0.8779286},"labels":[],"label_agreement":null},{"id":"W3120863491","doi":"10.1016/j.tube.2020.102049","title":"A new resource on artificial intelligence powered computer automated detection software products for tuberculosis programmes and implementers","year":2021,"lang":"en","type":"article","venue":"Tuberculosis","topic":"COVID-19 diagnosis using AI","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Government of Canada; Rijksdienst voor Ondernemend Nederland","keywords":"Computer science; Certification; CAD; Software deployment; Risk analysis (engineering); Software engineering; Engineering; Medicine","score_opus":0.033411022552512604,"score_gpt":0.3231663742887683,"score_spread":0.2897553517362557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3120863491","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.76965374,0.0009854493,0.048252307,0.17183611,0.0010332743,0.00492272,0.00012082759,0.0031535607,0.0000420223],"genre_scores_gemma":[0.8985743,0.00013720618,0.07792036,0.021021806,0.001172974,0.00044863223,0.00036597456,0.00018630459,0.00017244992],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99754524,0.00009746263,0.00051322684,0.00093677704,0.00037589914,0.0005313723],"domain_scores_gemma":[0.9983151,0.00043433614,0.00011277259,0.00055676437,0.0003241815,0.00025685853],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003018386,0.00034176983,0.00047435763,0.0002382761,0.0002156846,0.00015597521,0.00009865253,0.0001529213,0.0000662815],"category_scores_gemma":[0.00078265,0.00033503555,0.00018224845,0.0007179854,0.000065979206,0.0001001442,0.00011657067,0.00021056455,0.00002645644],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063101685,0.00068999623,0.0014546971,0.0008423435,0.000483508,0.00005963952,0.0012189457,0.00011239769,0.014591277,0.00008291547,0.03838457,0.9414487],"study_design_scores_gemma":[0.0022975213,0.0037499063,0.015714994,0.0016098691,0.0015780065,0.0003597867,0.0006469922,0.025741413,0.8110298,0.000675676,0.13533656,0.0012595042],"about_ca_topic_score_codex":0.00026163485,"about_ca_topic_score_gemma":0.00014269787,"teacher_disagreement_score":0.9401892,"about_ca_system_score_codex":0.00027134115,"about_ca_system_score_gemma":0.00022730732,"threshold_uncertainty_score":0.9999102},"labels":[],"label_agreement":null},{"id":"W32747725","doi":"10.1007/978-3-642-18937-1_48","title":"Tuberculosis Control in Developing and Developed Countries","year":2004,"lang":"en","type":"book-chapter","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Heart Institute","funders":"","keywords":"Tuberculosis; Medicine; Tuberculosis control; Public health; Developing country; Global health; Developed country; Environmental health; Intensive care medicine; Economic growth; Population; Nursing; Pathology; Economics","score_opus":0.03080869509429578,"score_gpt":0.30228005028932226,"score_spread":0.27147135519502646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W32747725","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.047459636,0.031730395,0.0004180612,0.15553473,0.0007048693,0.00616567,0.0005132793,0.0006876569,0.7567857],"genre_scores_gemma":[0.5450233,0.16823986,0.009942005,0.0915667,0.0019049345,0.00093141606,0.0012547051,0.0012659489,0.1798711],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.99539053,0.00011338852,0.0013287737,0.0012413629,0.00073302217,0.0011929176],"domain_scores_gemma":[0.9974851,0.0006482933,0.0002380516,0.0006949442,0.00035717385,0.0005764138],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010246218,0.0009708773,0.0023288613,0.0010233618,0.0001795172,0.000064229025,0.00025033523,0.0012674928,0.001367392],"category_scores_gemma":[0.00049993827,0.0008793886,0.00034036176,0.00017723945,0.0005403092,0.00017794788,0.00021525158,0.0013891397,0.00062860356],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033516993,0.00035194363,0.12975444,0.0071303,0.007515175,0.0039189216,0.0015014719,0.00006285329,0.00064033567,0.7731356,0.038638093,0.03399918],"study_design_scores_gemma":[0.014148369,0.0010158666,0.14018461,0.008379935,0.0018830635,0.0015284366,0.000088239096,0.00024752613,0.00034719703,0.041691646,0.78690016,0.003584922],"about_ca_topic_score_codex":0.0007332527,"about_ca_topic_score_gemma":0.0007758198,"teacher_disagreement_score":0.7482621,"about_ca_system_score_codex":0.0013608391,"about_ca_system_score_gemma":0.0011716265,"threshold_uncertainty_score":0.9995455},"labels":[],"label_agreement":null},{"id":"W4221011100","doi":"10.1016/j.tube.2022.102167","title":"Domestic pigs experimentally infected with Mycobacterium bovis and Mycobacterium tuberculosis exhibit different disease outcomes","year":2022,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Diagnostic Services Manitoba; University of Saskatchewan","funders":"","keywords":"Mycobacterium bovis; Tuberculosis; Mycobacterium tuberculosis; Disease; Biology; Medicine; Immunology; Pathology","score_opus":0.015053109475476506,"score_gpt":0.28900688893577364,"score_spread":0.27395377946029714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221011100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9803114,0.0012830787,0.000026555348,0.015214886,0.00027278418,0.0014049163,0.0004237719,0.00035621194,0.0007063823],"genre_scores_gemma":[0.99059355,0.0007989159,0.00025251496,0.0051631713,0.00017454493,0.0013332708,0.0008026476,0.00014984261,0.0007315347],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9948124,0.00066402945,0.0008025368,0.001266718,0.0010936814,0.0013606112],"domain_scores_gemma":[0.996382,0.0005511196,0.00019160648,0.0011140081,0.00016183665,0.0015994322],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044225255,0.00082187273,0.0014943823,0.00053860515,0.0006691356,0.00010762487,0.00030046984,0.00013981336,0.003057039],"category_scores_gemma":[0.0003865535,0.00055574777,0.00039682598,0.00063129386,0.00038323025,0.00027596788,0.000854725,0.0009025684,0.00008128107],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002190112,0.0013890796,0.96594185,0.00039479986,0.0011717485,0.00055608415,0.00048171313,0.000020627176,0.021991072,0.00011929054,0.0045505823,0.0011930738],"study_design_scores_gemma":[0.0036127258,0.0019451393,0.98504,0.00010299722,0.00082488765,0.00054082414,0.00035895288,0.00032312662,0.0007644112,0.00007248532,0.005660641,0.0007537975],"about_ca_topic_score_codex":0.00048741305,"about_ca_topic_score_gemma":0.00004955626,"teacher_disagreement_score":0.021226661,"about_ca_system_score_codex":0.0006242615,"about_ca_system_score_gemma":0.0002095877,"threshold_uncertainty_score":0.9996894},"labels":[],"label_agreement":null},{"id":"W4308980334","doi":"10.1016/j.tube.2022.102273","title":"Evaluation of three alternatives cost-effective culture media for Mycobacterium tuberculosis detection and drug susceptibility determination using the microscopic observation drug susceptibility (MODS) assay","year":2022,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica; Tulane University","keywords":"Pyrazinamide; Isoniazid; Mycobacterium tuberculosis; Tuberculosis; Sputum; Drug; Microbiology; Drug resistance; Medicine; Pharmacology; Biology; Pathology","score_opus":0.06524136032312981,"score_gpt":0.36519186557059324,"score_spread":0.2999505052474634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308980334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9856032,0.0009863408,0.0023290352,0.0021862697,0.00045852753,0.008006598,0.0003176381,0.000063967454,0.000048426005],"genre_scores_gemma":[0.99498314,0.00017093464,0.0011467148,0.0002807618,0.0002495245,0.0027923281,0.00030479234,0.000046741352,0.000025054987],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9926649,0.0036055613,0.0008411962,0.0009347249,0.0013778647,0.0005757666],"domain_scores_gemma":[0.9949387,0.002009392,0.0004486995,0.000722455,0.0016910259,0.00018977054],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.01308855,0.00039157187,0.0007431599,0.00025499205,0.0007687355,0.000045523102,0.00024656675,0.00016108631,0.00017210218],"category_scores_gemma":[0.0051005697,0.00030563987,0.00033334142,0.0006261114,0.00038816824,0.00039480167,0.0002615481,0.00063406146,0.0000020323369],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010520709,0.0005969712,0.3026842,0.00066283304,0.00059468945,0.0000015273017,0.005966377,0.00071780727,0.5360922,0.000044781962,0.0004147874,0.15117173],"study_design_scores_gemma":[0.0030001549,0.00060654024,0.7363836,0.00009900975,0.0016794661,0.000041472224,0.002275414,0.18033783,0.07263989,0.0021741576,0.00039777902,0.00036464632],"about_ca_topic_score_codex":0.0023135678,"about_ca_topic_score_gemma":0.0061853984,"teacher_disagreement_score":0.46345234,"about_ca_system_score_codex":0.0016208029,"about_ca_system_score_gemma":0.00021676836,"threshold_uncertainty_score":0.99993956},"labels":[],"label_agreement":null},{"id":"W4310243785","doi":"10.1016/j.tube.2022.102287","title":"Lumbosacral tuberculosis, a rare manifestation of Pott's disease – How identified human skeletons from the pre-antibiotic era can be used as reference cases to establish a palaeopathological diagnosis of tuberculosis","year":2022,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Infectious Diseases and Tuberculosis","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Office of the Chief Medical Examiner","funders":"","keywords":"Tuberculosis; Medicine; Lumbosacral joint; Paleopathology; Disease; Antibiotics; Pathology; Surgery; Biology","score_opus":0.02644225832151964,"score_gpt":0.2888260990598527,"score_spread":0.26238384073833304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310243785","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.970828,0.00076865574,0.000008286365,0.018618923,0.00030832915,0.0026533694,0.0062373197,0.00022115173,0.00035594532],"genre_scores_gemma":[0.992549,0.00036326464,0.00016069201,0.0029539878,0.00020088765,0.0012100732,0.0022187908,0.00014516636,0.00019813525],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9932025,0.0010570122,0.0012676099,0.0014409488,0.0020444943,0.0009874396],"domain_scores_gemma":[0.99479157,0.001166567,0.0005940854,0.0019209193,0.0006192641,0.00090761576],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007127937,0.0008252469,0.0014439443,0.0005368814,0.0010619062,0.00019038319,0.0008013802,0.00023414927,0.0024791176],"category_scores_gemma":[0.0015627071,0.000700468,0.0010490012,0.0018389089,0.0004117131,0.00033149734,0.00079311285,0.0008861698,0.000020643874],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009661265,0.003939314,0.9596834,0.00070827996,0.0013419442,0.001022382,0.0030361223,0.00030238958,0.01540862,0.0012089281,0.010557453,0.0018250061],"study_design_scores_gemma":[0.002091349,0.001784823,0.97970337,0.00045697135,0.0045941477,0.00016770359,0.0026852253,0.000113664486,0.0063421205,0.00045972344,0.00076172175,0.00083921285],"about_ca_topic_score_codex":0.026776614,"about_ca_topic_score_gemma":0.0030961107,"teacher_disagreement_score":0.023680503,"about_ca_system_score_codex":0.0005132573,"about_ca_system_score_gemma":0.00042602845,"threshold_uncertainty_score":0.9995446},"labels":[],"label_agreement":null},{"id":"W4313856889","doi":"10.1016/j.tube.2023.102305","title":"Environmental risk of nontuberculous mycobacterial infection: Strategies for advancing methodology","year":2023,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Nontuberculous mycobacteria; Tuberculosis; Environmental health; Infectious disease (medical specialty); Medicine; Disease; Environmental resource management; Environmental planning; Geography; Mycobacterium; Pathology; Environmental science","score_opus":0.03861689411903848,"score_gpt":0.3327602416638373,"score_spread":0.2941433475447988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313856889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962817,0.00010735214,0.00096797047,0.0003474696,0.00040846394,0.00069057505,0.00029186657,0.00014052169,0.000764075],"genre_scores_gemma":[0.99265,0.0023780153,0.0037879657,0.000101106736,0.00046864644,0.00027726937,0.00020529554,0.000039845912,0.00009190744],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982794,0.00022522954,0.00037414848,0.00033771433,0.0002702892,0.0005132067],"domain_scores_gemma":[0.99823725,0.0010491132,0.000115683506,0.0003320638,0.00005650602,0.00020939787],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091958285,0.00019024865,0.0005036456,0.00025944196,0.0001175978,0.000022368653,0.00007834188,0.00015142845,0.0007166819],"category_scores_gemma":[0.0007412691,0.00016943955,0.00030147933,0.0003106755,0.00011192219,0.0001749509,0.000081766215,0.00017528441,0.00012810057],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018334951,0.0004252942,0.5055118,0.00091003196,0.00095847994,0.00004144589,0.00095037016,0.00018067745,0.44386837,0.00052449416,0.009257218,0.035538338],"study_design_scores_gemma":[0.003128627,0.0019851332,0.92249304,0.0000996581,0.0007177266,0.00007031004,0.0008124812,0.00069126487,0.057117734,0.0018157936,0.010741538,0.00032667347],"about_ca_topic_score_codex":0.00075183494,"about_ca_topic_score_gemma":0.00010295713,"teacher_disagreement_score":0.41698128,"about_ca_system_score_codex":0.00009808239,"about_ca_system_score_gemma":0.00011261593,"threshold_uncertainty_score":0.7847164},"labels":[],"label_agreement":null},{"id":"W4386647005","doi":"10.1016/j.tube.2023.102409","title":"Type I interferons and Mycobacterium tuberculosis whole cell lysate induce distinct transcriptional responses in M. tuberculosis infection","year":2023,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Public Health Agency; Public Health Agency of Canada","keywords":"Mycobacterium tuberculosis; Tuberculosis; Gene; Interferon; Peripheral blood mononuclear cell; Biology; Immunology; Gene expression; Stimulation; Virology; Medicine; Genetics; In vitro","score_opus":0.03902245372030285,"score_gpt":0.3195103658500073,"score_spread":0.2804879121297045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386647005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9778346,0.00069058395,0.000010981476,0.017174425,0.00054439844,0.00082506624,0.00015641758,0.00044546113,0.0023180991],"genre_scores_gemma":[0.99064595,0.0051577147,0.00016841406,0.0012143964,0.00030402676,0.00025851172,0.00054019276,0.000119606346,0.0015911763],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9949594,0.0008533815,0.0010242001,0.001162078,0.00062901044,0.0013719097],"domain_scores_gemma":[0.9973466,0.00084288814,0.00012393418,0.00073446415,0.0002678677,0.0006842437],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017043909,0.00062894204,0.0010866877,0.0015015261,0.00027944843,0.00009638681,0.00020588543,0.0005443493,0.0005226771],"category_scores_gemma":[0.0012224854,0.00058062235,0.00034849832,0.0024809062,0.00035063815,0.00045312484,0.00025618123,0.0011158709,0.001118584],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020534308,0.0006900061,0.72605383,0.00080931414,0.00042143217,0.0002006985,0.0011110813,0.000029120665,0.24672954,0.00014262061,0.013740837,0.008018065],"study_design_scores_gemma":[0.002019521,0.0009225645,0.97299874,0.0003022127,0.00028468293,0.0001964289,0.00021690545,0.0012562635,0.0050621787,0.00024247992,0.015924871,0.0005731772],"about_ca_topic_score_codex":0.0022119468,"about_ca_topic_score_gemma":0.0010771825,"teacher_disagreement_score":0.24694486,"about_ca_system_score_codex":0.00042596308,"about_ca_system_score_gemma":0.00020383725,"threshold_uncertainty_score":0.99966455},"labels":[],"label_agreement":null},{"id":"W4392970745","doi":"10.1016/j.tube.2024.102503","title":"Preclinical murine models for the testing of antimicrobials against Mycobacterium abscessus pulmonary infections: Current practices and recommendations","year":2024,"lang":"en","type":"review","venue":"Tuberculosis","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Queen's University; Queen's University Belfast; National Institutes of Health; University of Central Florida; Australian Government; Oregon State University; Colorado State University; Hackensack Meridian Health; Syracuse University; Cystic Fibrosis Foundation","keywords":"Mycobacterium abscessus; Medicine; Cystic fibrosis; Nontuberculous mycobacteria; Intensive care medicine; Antibiotics; Bronchiectasis; Mycobacterium tuberculosis; Immunology; Tuberculosis; Mycobacterium; Lung; Pathology; Internal medicine; Biology; Microbiology","score_opus":0.21814881883523457,"score_gpt":0.46250950299201915,"score_spread":0.24436068415678458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392970745","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00029092806,0.9919764,0.0000377231,0.0020163727,0.0006759008,0.0031332616,0.0010539234,0.00008595301,0.0007295703],"genre_scores_gemma":[0.00040024865,0.99578893,0.0007406416,0.00007867918,0.0007347206,0.0014014133,0.0006690919,0.00008420228,0.000102083395],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99725616,0.00025338502,0.0011985427,0.0006431726,0.0002524444,0.00039627653],"domain_scores_gemma":[0.99020827,0.0077406415,0.00086440326,0.00059618,0.00037859753,0.00021192314],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012256713,0.0004423967,0.001532516,0.00033743703,0.00019983517,0.00013866325,0.00021810774,0.00025017495,0.000066925095],"category_scores_gemma":[0.004586161,0.0002735312,0.0006179408,0.00063961855,0.00014917355,0.0002531077,0.00026193933,0.00082124956,0.000028039969],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031362324,0.0005280816,0.00021803276,0.07545735,0.0008753065,0.000007052282,0.000029140785,0.000001750996,0.000022506305,0.00003598772,0.008288872,0.9145045],"study_design_scores_gemma":[0.00025360688,0.0002647595,0.00008900193,0.036612082,0.00899464,0.0001750847,0.000018893,0.0008904444,0.000013078227,0.000089110195,0.9523117,0.0002875949],"about_ca_topic_score_codex":0.00010735072,"about_ca_topic_score_gemma":0.000012789875,"teacher_disagreement_score":0.94402283,"about_ca_system_score_codex":0.00009430975,"about_ca_system_score_gemma":0.00051484234,"threshold_uncertainty_score":0.9999717},"labels":[],"label_agreement":null}]}