{"meta":{"query_hash":"ce94a9e3e3c6","filters":{"venue":"Virulence"},"cohort_total":109,"direct_labels_cover":0,"predictions_cover":109,"exported":109,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/ce94a9e3e3c6","api":"https://metacan.xera.ac/api/v1/cohort?venue=Virulence"},"results":[{"id":"W1485838621","doi":"10.1080/21505594.2015.1044195","title":"The mycobacterial P55 efflux pump is required for optimal growth on cholesterol","year":2015,"lang":"en","type":"article","venue":"Virulence","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Efflux; Biology; Cholesterol; Mycobacterium tuberculosis; Transporter; In vivo; Mutant; Catabolism; In vitro; Metabolism; Biochemistry; Microbiology; Cell biology; Tuberculosis; Gene; Genetics; Medicine","score_opus":0.07299432344103783,"score_gpt":0.3588195478451638,"score_spread":0.28582522440412594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1485838621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97332394,0.00009538415,0.00024952146,0.023173915,0.0005823573,0.00065659196,0.000041469833,0.000055615306,0.0018212132],"genre_scores_gemma":[0.9913178,0.00017558037,0.00046076323,0.0057910406,0.0010586691,0.000169801,0.000020517893,0.000023130033,0.0009826694],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985068,0.00012339493,0.0002492987,0.00031011022,0.00028166515,0.0005287334],"domain_scores_gemma":[0.9985371,0.00047153843,0.00006040532,0.00040629922,0.00018245973,0.00034215942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009848146,0.00013834871,0.0002514059,0.00004859613,0.0001386577,0.00003611931,0.00023717649,0.00011227118,0.00003015147],"category_scores_gemma":[0.0028146533,0.00008416987,0.00009789805,0.00009531407,0.00017798971,0.000093704046,0.000067312896,0.0001917595,0.0004063806],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022957548,0.00075143756,0.043912593,0.00037223235,0.00048348765,0.00006265971,0.0019904368,0.000034034925,0.13047145,0.008564678,0.7409187,0.049480718],"study_design_scores_gemma":[0.01840816,0.015461404,0.17101231,0.0004082539,0.00020792852,0.00021838798,0.0004329435,0.005750529,0.1366864,0.004372288,0.6461679,0.0008735292],"about_ca_topic_score_codex":0.00007972807,"about_ca_topic_score_gemma":0.000006841082,"teacher_disagreement_score":0.12709971,"about_ca_system_score_codex":0.00008483002,"about_ca_system_score_gemma":0.00013204652,"threshold_uncertainty_score":0.5223336},"labels":[],"label_agreement":null},{"id":"W1522963829","doi":"10.4161/viru.25949","title":"Contrasting pediatric and adult cerebral malaria","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Malaria Research and Control","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research; Toronto General Hospital; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research","keywords":"Cerebral Malaria; Malaria; Inflammation; Cerebral edema; Endothelium; Biology; Immunology; Neurovascular bundle; Pathology; Medicine; Plasmodium falciparum; Internal medicine; Endocrinology","score_opus":0.03707068195374581,"score_gpt":0.32512849332759947,"score_spread":0.28805781137385367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1522963829","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000033081888,0.99575967,0.00007995943,0.00026181195,0.00010165227,0.0015535946,0.000033096363,0.00006128218,0.0021158417],"genre_scores_gemma":[0.00021838532,0.9963723,0.000445885,0.00013153117,0.000922732,0.00025976152,0.000032149903,0.00004380654,0.0015734738],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980643,0.00012354503,0.0004499136,0.0004784386,0.00035935378,0.0005244671],"domain_scores_gemma":[0.9986093,0.00026590127,0.00019069319,0.00036347128,0.00016668909,0.00040392956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023898373,0.00033997407,0.0013141675,0.00020070933,0.000079298436,0.000083148,0.00018708005,0.00029380686,0.0006577553],"category_scores_gemma":[0.00089322776,0.00023937761,0.00021227536,0.0002511355,0.00006742132,0.00009706572,0.000116264295,0.00074968935,0.00058066554],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014968557,0.000030862357,0.00018144239,0.019490298,0.00008336276,0.00007576334,0.000008011158,4.986281e-9,0.0000016322465,0.0019750376,0.0012142839,0.97692436],"study_design_scores_gemma":[0.002139492,0.00044365507,0.0012612932,0.010032488,0.0028091385,0.0005790129,0.000017251823,0.00023637341,0.0000010259828,0.00012580956,0.9816449,0.00070950453],"about_ca_topic_score_codex":0.00006825797,"about_ca_topic_score_gemma":0.0000019743993,"teacher_disagreement_score":0.98043066,"about_ca_system_score_codex":0.000046384783,"about_ca_system_score_gemma":0.00040714667,"threshold_uncertainty_score":0.97615355},"labels":[],"label_agreement":null},{"id":"W1531268983","doi":"10.4161/viru.2.5.17724","title":"<i>Staphylococcus aureus</i>biofilms","year":2011,"lang":"yi","type":"review","venue":"Virulence","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":998,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Staphylococcus aureus; Microbiology; Biofilm; Biology; Staphylococcal infections; Staphylococcus; Bacteria; Genetics","score_opus":0.02815352798364452,"score_gpt":0.26901681090024926,"score_spread":0.24086328291660475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1531268983","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0053989557,0.98328775,0.000033820892,0.000056247263,0.0027393962,0.0009042537,0.0005590546,0.000051463965,0.00696905],"genre_scores_gemma":[0.0057726665,0.9876461,0.00090169953,0.000546241,0.0021140706,0.000043504202,0.00073331397,0.00017682326,0.002065551],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99536586,0.0003369939,0.0011169541,0.001736486,0.00025361107,0.001190102],"domain_scores_gemma":[0.99670535,0.000032478853,0.0008073072,0.0018334182,0.00019882772,0.00042259766],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043745287,0.0012418843,0.0015671339,0.00014092709,0.0002976934,0.00015646641,0.0011430323,0.0017493312,0.00039113712],"category_scores_gemma":[0.00012445734,0.0011174409,0.0010221134,0.0003495409,0.00044359433,0.000013122232,0.00072801707,0.0006855103,0.0014997092],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077207165,0.00016923512,0.000027325608,0.0029154809,0.00034840452,0.000043195803,0.000039784623,2.3045399e-7,0.56438047,0.00036451183,0.0054629827,0.42617115],"study_design_scores_gemma":[0.00026713024,0.00041664072,0.000015731626,0.0027253083,0.0004246496,0.000048069727,0.000016980064,0.0000013477045,0.04679852,0.000011385763,0.94796395,0.0013102909],"about_ca_topic_score_codex":0.00013187058,"about_ca_topic_score_gemma":0.00002455175,"teacher_disagreement_score":0.94250095,"about_ca_system_score_codex":0.0000529703,"about_ca_system_score_gemma":0.00056749745,"threshold_uncertainty_score":0.9995466},"labels":[],"label_agreement":null},{"id":"W1627391813","doi":"10.1080/21505594.2015.1059560","title":"Climate change, health and infectious disease","year":2015,"lang":"en","type":"review","venue":"Virulence","topic":"Climate Change and Health Impacts","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Burnaby Hospital; Simon Fraser University","funders":"","keywords":"Climate change; Infectious disease (medical specialty); Disease; Biology; Emerging infectious disease; Ebola virus; Outbreak; Social determinants of health; Ecology; Virology; Public health; Medicine","score_opus":0.20016635304311414,"score_gpt":0.41416181998177565,"score_spread":0.2139954669386615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1627391813","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000028163664,0.9963446,0.0000012297779,0.00023006112,0.00023982393,0.0010225297,0.00021190183,0.00008130181,0.0018403388],"genre_scores_gemma":[0.000008032017,0.997498,0.000030189141,0.0018761464,0.0002210582,0.00020447774,0.00006307339,0.000040983494,0.00005806349],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980078,0.00013853308,0.00037328337,0.0005055862,0.00029365678,0.0006811642],"domain_scores_gemma":[0.9977487,0.000049551378,0.00031407646,0.00038327902,0.000005847664,0.001498567],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005047481,0.0003356875,0.0008571199,0.00007041867,0.00019341016,0.000045368055,0.0001948318,0.000117081625,0.00029500603],"category_scores_gemma":[0.00006553698,0.00027024263,0.00008330832,0.00029367258,0.00012961205,0.00022158606,0.0004406604,0.0002448776,0.0016577406],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000027894714,0.00002654128,0.0002933185,0.0076191146,0.0000016024611,0.000012664571,0.00021716715,5.2590803e-8,6.9502892e-9,0.000027505255,0.0038703363,0.9879289],"study_design_scores_gemma":[0.00008097108,0.000110217115,0.00018405294,0.0069494923,0.000048986163,0.000024259778,0.000009539823,0.0000075581534,5.149005e-9,0.000168496,0.9921531,0.00026331862],"about_ca_topic_score_codex":0.0002258458,"about_ca_topic_score_gemma":0.00007416414,"teacher_disagreement_score":0.98828274,"about_ca_system_score_codex":0.00039184096,"about_ca_system_score_gemma":0.00009420028,"threshold_uncertainty_score":0.99997497},"labels":[],"label_agreement":null},{"id":"W1837294006","doi":"10.1080/21505594.2015.1056971","title":"The type II histidine triad protein HtpsC is a novel adhesion with the involvement of<i>Streptococcus suis</i>virulence","year":2015,"lang":"en","type":"article","venue":"Virulence","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus suis; Virulence; Biology; Microbiology; Bacterial adhesin; Streptococcus; Pathogenesis; Recombinant DNA; Streptococcus agalactiae; Virology; Bacteria; Gene; Genetics; Immunology","score_opus":0.05471275633053022,"score_gpt":0.29602498243649145,"score_spread":0.24131222610596123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1837294006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99174607,0.00093050144,0.0002822692,0.0024732538,0.00017489903,0.0023972425,0.00002513586,0.00006348418,0.0019071352],"genre_scores_gemma":[0.9956804,0.000096635355,0.0004482967,0.00026876028,0.00009457961,0.00042778443,0.000007260454,0.000021287899,0.0029549967],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985381,0.000045561465,0.00030625318,0.00032825366,0.0004912329,0.00029063743],"domain_scores_gemma":[0.99840164,0.00010064321,0.00021087802,0.0007281236,0.00039662895,0.00016207731],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003711512,0.00021975944,0.00025649823,0.000052274285,0.00034864512,0.000025816787,0.00021203709,0.000066350556,0.00007847036],"category_scores_gemma":[0.00018219228,0.00010135829,0.00008208973,0.0005362788,0.00029692243,0.00009085782,0.000120195364,0.0001959228,0.00006861551],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010375064,0.007818362,0.44753563,0.00044058304,0.0017602516,0.00012516494,0.005720771,0.00009131737,0.40933657,0.00954426,0.04505539,0.06219666],"study_design_scores_gemma":[0.020592483,0.021896668,0.1245262,0.0022410336,0.0010488952,0.00010612773,0.0020251076,0.0011058555,0.5360147,0.00086310576,0.28854686,0.0010330126],"about_ca_topic_score_codex":0.0005593508,"about_ca_topic_score_gemma":0.00006368516,"teacher_disagreement_score":0.32300943,"about_ca_system_score_codex":0.00013091779,"about_ca_system_score_gemma":0.00028997462,"threshold_uncertainty_score":0.4133271},"labels":[],"label_agreement":null},{"id":"W1936337345","doi":"10.1080/21505594.2015.1062211","title":"A tug-of-war between the host and the pathogen generates strategic hotspots for the development of novel therapeutic interventions against infectious diseases","year":2015,"lang":"en","type":"review","venue":"Virulence","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Pathogen; Host (biology); Pattern recognition receptor; Host–pathogen interaction; Tug of war; Computational biology; Pathogen-associated molecular pattern; Immunology; Immunity; Immune system; Virulence; Gene; Genetics","score_opus":0.133123151650341,"score_gpt":0.35839203802923475,"score_spread":0.22526888637889375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1936337345","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0026395724,0.99393636,0.0007639084,0.00003849061,0.00031532682,0.0014079086,0.000824407,0.000016186134,0.000057833164],"genre_scores_gemma":[0.042617537,0.95642495,0.000033171018,0.000037016944,0.000038416194,0.0004799253,0.00013546883,0.000028215181,0.00020528155],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980995,0.00058659783,0.0007830557,0.00023784109,0.000053661275,0.00023932365],"domain_scores_gemma":[0.9969758,0.001804026,0.0006013852,0.00044296205,0.00016005783,0.000015812944],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009635852,0.00031363618,0.0009563321,0.00009130371,0.000350233,0.000023274853,0.0006510405,0.00019357039,0.000017344402],"category_scores_gemma":[0.00013553588,0.00012979057,0.0005092147,0.00017277173,0.00093457545,0.00003587123,0.00019998489,0.0002905301,0.000014969847],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024714888,0.00023683163,0.00004635471,0.0041321097,0.0030007625,3.2072225e-7,0.0013933234,0.0000021201895,0.0019646948,0.0015861794,0.00008912275,0.98730105],"study_design_scores_gemma":[0.0040057893,0.0006621003,0.0013043042,0.013050237,0.006001549,0.00006652786,0.0017684816,0.000019104611,0.0012737348,0.0003419094,0.97071075,0.00079552684],"about_ca_topic_score_codex":0.000019826739,"about_ca_topic_score_gemma":0.00001599388,"teacher_disagreement_score":0.9865055,"about_ca_system_score_codex":0.000033614175,"about_ca_system_score_gemma":0.00050061074,"threshold_uncertainty_score":0.5292706},"labels":[],"label_agreement":null},{"id":"W1966698458","doi":"10.4161/viru.29652","title":"Effector biology during biotrophic invasion of plant cells","year":2014,"lang":"en","type":"review","venue":"Virulence","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Trois-Rivières; Université de Moncton; Innovation and Economic Development Trois Rivières","funders":"","keywords":"Effector; Biology; Haustorium; Obligate; Virulence; Cell biology; Host (biology); Obligate parasite; Plant Immunity; Function (biology); Nicotiana benthamiana; Immunity; Genetics; Immune system; Arabidopsis; Gene; Mutant; Ecology","score_opus":0.03525008125203428,"score_gpt":0.26175333528779227,"score_spread":0.226503254035758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966698458","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14326566,0.85433155,0.0000010590384,0.000005391289,0.0004308124,0.00031888005,0.0015248414,0.000038125178,0.00008369388],"genre_scores_gemma":[0.0053821295,0.99398685,0.000015478769,0.0000073346655,0.00015029545,0.000016727066,0.00037010078,0.0000014667203,0.00006963747],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99872214,0.00028002582,0.00040852063,0.00029601218,0.00006477044,0.00022855317],"domain_scores_gemma":[0.99893594,0.00048795235,0.00037651972,0.00011727746,0.000028961085,0.000053370648],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015131777,0.00024560717,0.0008538644,0.000037101585,0.000121001,0.000019899364,0.00048000296,0.00026162335,0.0002443896],"category_scores_gemma":[0.000044925422,0.000080209524,0.00035933818,0.00022469234,0.000072071874,0.000048475675,0.0001555759,0.00030395505,0.00032962023],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009208427,0.000060724808,0.000015657206,0.001944168,0.000036787424,0.0000031926513,0.0000038068356,1.7708143e-7,0.52254856,0.000011461564,0.00017516555,0.47519106],"study_design_scores_gemma":[0.000039536164,0.0002538241,0.00026672872,0.0060147773,0.00006677644,0.000049010723,0.000002061983,0.0000020326354,0.0036764098,0.00000720052,0.989367,0.0002546166],"about_ca_topic_score_codex":0.00055719103,"about_ca_topic_score_gemma":0.00005462791,"teacher_disagreement_score":0.98919183,"about_ca_system_score_codex":0.00003682788,"about_ca_system_score_gemma":0.000015422465,"threshold_uncertainty_score":0.42367113},"labels":[],"label_agreement":null},{"id":"W1969437137","doi":"10.4161/viru.25436","title":"Host innate immune responses to sepsis","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":465,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"ZonMw","keywords":"Biology; Immune system; Pattern recognition receptor; Sepsis; Innate immune system; Pathogen; Immunology; Pathogen-associated molecular pattern; Virulence; Receptor; Inflammation; Gene; Genetics","score_opus":0.18883061160899375,"score_gpt":0.4276734712487878,"score_spread":0.23884285963979404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969437137","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00041206993,0.995166,0.0000029983264,0.0005411392,0.00029172222,0.0018892525,0.00007729362,0.00009060675,0.0015288892],"genre_scores_gemma":[0.00008116645,0.9924278,0.00070448685,0.00072423654,0.00014767582,0.0012808681,0.000049790877,0.00007710054,0.004506873],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979532,0.00013010662,0.0006131392,0.00059013936,0.0003295727,0.000383863],"domain_scores_gemma":[0.9980549,0.0003853383,0.00020866426,0.00095952535,0.00010430633,0.00028725766],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001937579,0.0004910227,0.0018364637,0.00035439956,0.000072971336,0.000053240932,0.00025836687,0.00020889503,0.0008303787],"category_scores_gemma":[0.00036573774,0.00033099216,0.00054234033,0.0005472915,0.000049285936,0.00005890274,0.00015642704,0.00031114114,0.010226884],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015383257,0.00019273513,0.00006998186,0.0033462977,0.00026825623,0.00011241442,0.000034836976,1.7447025e-8,0.0000068320214,0.000030626645,0.005756728,0.9901659],"study_design_scores_gemma":[0.00019903306,0.000323161,0.0011615158,0.023949953,0.001127704,0.00005297058,0.000005893889,2.9459179e-7,0.00006488,0.0000055231594,0.9728115,0.00029755954],"about_ca_topic_score_codex":0.0001479164,"about_ca_topic_score_gemma":0.0000024888545,"teacher_disagreement_score":0.98986834,"about_ca_system_score_codex":0.00023663724,"about_ca_system_score_gemma":0.00028707503,"threshold_uncertainty_score":0.9999142},"labels":[],"label_agreement":null},{"id":"W1970424357","doi":"10.4161/21505594.2014.992662","title":"Epidemiology, ecology and gene pool of influenza A virus in Egypt: Will Egypt be the epicentre of the next influenza pandemic?","year":2015,"lang":"en","type":"review","venue":"Virulence","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Saskatchewan","keywords":"Influenza A virus subtype H5N1; Reassortment; Pandemic; Biology; Human mortality from H5N1; Influenza A virus; Virology; Transmission and infection of H5N1; Transmission (telecommunications); Virus; Avian influenza virus; Disease; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Medicine","score_opus":0.3591854490134801,"score_gpt":0.47631425856896287,"score_spread":0.11712880955548277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970424357","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02117372,0.97479355,0.0000019965137,0.00038887112,0.00019057868,0.0028746838,0.0003275305,0.000027843887,0.00022123009],"genre_scores_gemma":[0.0008440454,0.99470764,0.00014057789,0.003695934,0.00014482567,0.00030578472,0.000009049804,0.00006228791,0.00008982207],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99291456,0.0022508942,0.0024066654,0.00079567556,0.00064684637,0.0009853477],"domain_scores_gemma":[0.9920722,0.004031505,0.0015608926,0.0016049276,0.00049664994,0.00023381418],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0046766573,0.0007187259,0.0041952278,0.0003984885,0.00014727583,0.000008512444,0.0011514628,0.000810107,0.000055589153],"category_scores_gemma":[0.011383016,0.00037584422,0.0005333392,0.0010483608,0.0026892081,0.00018288619,0.0014714287,0.0018048421,0.000029937402],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008407131,0.00059562555,0.21189901,0.03701193,0.00221313,0.000085611035,0.003181822,0.000068434056,0.00041584205,0.001628677,0.0030405927,0.7390186],"study_design_scores_gemma":[0.0014857805,0.00034720518,0.019652663,0.008224041,0.0009727427,0.00013863796,0.00018526454,0.000028732438,0.00005602572,0.000502013,0.9680235,0.00038339937],"about_ca_topic_score_codex":0.001039345,"about_ca_topic_score_gemma":0.0003802768,"teacher_disagreement_score":0.9649829,"about_ca_system_score_codex":0.0003859314,"about_ca_system_score_gemma":0.0014534047,"threshold_uncertainty_score":0.99986935},"labels":[],"label_agreement":null},{"id":"W1973166906","doi":"10.4161/viru.29092","title":"“If you bring an alarm, we will destroy it,” said<i>Brucella</i>to the host cell","year":2014,"lang":"en","type":"letter","venue":"Virulence","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"Centre National de la Recherche Scientifique; Institut National de la Santé et de la Recherche Médicale","keywords":"Brucella; Biology; Secretion; Intracellular; Host (biology); Microbiology; Intracellular parasite; Virulence; Brucellosis; Virology; Cell biology; Genetics; Biochemistry; Gene","score_opus":0.07365659138764907,"score_gpt":0.3232406024208129,"score_spread":0.2495840110331638,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973166906","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03466703,0.0039085974,0.00056000624,0.94986683,0.0033984473,0.002047128,0.0004457818,0.0004806164,0.004625561],"genre_scores_gemma":[0.044519685,0.0032068153,0.004211911,0.9307282,0.010288815,0.00062638585,0.00024720829,0.00043183818,0.0057391473],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99189514,0.0017185638,0.0012635248,0.0023976837,0.00078182376,0.0019432437],"domain_scores_gemma":[0.9929272,0.0019649046,0.0007732046,0.0037175862,0.00019526161,0.00042186407],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.001430699,0.0014397482,0.0014134719,0.0002948226,0.00047044863,0.00020923775,0.0028523987,0.001622029,0.0008038101],"category_scores_gemma":[0.0004018154,0.0011366227,0.00054315577,0.00029854724,0.0003714422,0.00036550462,0.0007592506,0.0030192062,0.01194687],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007066784,0.0001590836,0.00083482685,0.00024633325,0.00011946163,0.0020653794,0.000495862,0.00009939296,0.002132227,0.000013373315,0.99270123,0.0010621551],"study_design_scores_gemma":[0.00047156806,0.001228547,0.0008618962,0.00047876275,0.00027636866,0.00032080026,0.00007189974,0.0001539113,0.0014946003,0.0001766609,0.99322873,0.0012362335],"about_ca_topic_score_codex":0.0025439772,"about_ca_topic_score_gemma":0.00013144736,"teacher_disagreement_score":0.019138636,"about_ca_system_score_codex":0.00048736506,"about_ca_system_score_gemma":0.00014418135,"threshold_uncertainty_score":0.99983525},"labels":[],"label_agreement":null},{"id":"W1976461100","doi":"10.4161/viru.18639","title":"Mechanism of meningeal invasion by<i>Neisseria meningitidis</i>","year":2012,"lang":"en","type":"review","venue":"Virulence","topic":"Barrier Structure and Function Studies","field":"Neuroscience","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"","keywords":"Extravasation; Biology; Blood–brain barrier; Cell biology; Neisseria meningitidis; Microbiology; Pilus; Intracellular; Cerebrospinal fluid; Leukocyte extravasation; Tight junction; Perivascular space; Biogenesis; Immunology; Bacteria; Central nervous system; Neuroscience; Virulence; Anatomy; Biochemistry; Cell adhesion molecule; Genetics; Gene","score_opus":0.09770747075963597,"score_gpt":0.3147747843712625,"score_spread":0.2170673136116265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976461100","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000018281373,0.994368,0.000397744,0.000008256774,0.0013786075,0.0003793737,0.00018757672,0.00008857424,0.0031735806],"genre_scores_gemma":[0.0017275476,0.99722046,0.00013235149,0.00009675899,0.00016415192,0.000079913065,0.000012279641,0.00005162187,0.0005149373],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99773395,0.00022163369,0.0006549126,0.00061991496,0.000346173,0.00042343143],"domain_scores_gemma":[0.99840504,0.00028755565,0.0006314715,0.000502705,0.00003714778,0.00013607385],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023626725,0.00046314002,0.0012794408,0.00014045098,0.0002014888,0.00003069754,0.00054359954,0.0002645656,0.00019861868],"category_scores_gemma":[0.00017739159,0.00035264296,0.00029209882,0.0005012612,0.00016461666,0.00021940528,0.00029494875,0.00037658832,0.00016602689],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014150584,0.000058546288,0.0000019798304,0.007242735,0.00007174874,0.00000699633,0.00031543578,5.824394e-8,0.017960044,0.014386744,0.0035949457,0.95634663],"study_design_scores_gemma":[0.00007538748,0.00006279014,2.5924714e-7,0.0015602146,0.00041863584,0.000049919185,0.000011445325,6.67443e-7,0.017662156,0.00040509464,0.9794144,0.00033901396],"about_ca_topic_score_codex":0.000010545481,"about_ca_topic_score_gemma":8.854393e-7,"teacher_disagreement_score":0.97581947,"about_ca_system_score_codex":0.00004139921,"about_ca_system_score_gemma":0.000082529055,"threshold_uncertainty_score":0.99989253},"labels":[],"label_agreement":null},{"id":"W1982273635","doi":"10.4161/viru.24318","title":"Modulation of the enterohemorrhagic<i>E. coli</i>virulence program through the human gastrointestinal tract","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Virulence; Biology; Gastrointestinal tract; Pathogen; Microbiology; Host (biology); Virulence factor; Human pathogen; Escherichia coli; Human gastrointestinal tract; Enteric virus; Bacteria; Genetics; Gene","score_opus":0.05690977054245626,"score_gpt":0.36872853854767756,"score_spread":0.3118187680052213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982273635","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0068757986,0.9880071,0.00023419957,0.00008889735,0.0001516149,0.0030992292,0.00007221299,0.000029843923,0.0014410568],"genre_scores_gemma":[0.010426068,0.9859543,0.001393829,0.000060814975,0.00027395439,0.0010513263,0.000053173662,0.000049961734,0.00073659304],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976211,0.00041017603,0.0005556118,0.00053881167,0.0004423416,0.00043195055],"domain_scores_gemma":[0.99805266,0.00007931394,0.00055441825,0.0010435093,0.00021823101,0.00005184821],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029146625,0.0004130944,0.0005916606,0.000025733523,0.0003085929,0.00005955232,0.0013436298,0.00015293041,0.000024184033],"category_scores_gemma":[0.00031153942,0.00021906661,0.0004672837,0.00030339483,0.0006500921,0.000011961843,0.00065148034,0.000488568,0.000022358992],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021533573,0.0009716999,0.001022544,0.012117447,0.00028551338,0.0000071441727,0.00016946775,0.000036544214,0.033756066,0.00046749404,0.0052960976,0.94584846],"study_design_scores_gemma":[0.00019038409,0.000578042,0.0016200822,0.006001627,0.00022309287,0.000118218675,0.000048007798,0.00007255212,0.00067165657,0.00012108196,0.98991555,0.00043969476],"about_ca_topic_score_codex":0.00008587175,"about_ca_topic_score_gemma":0.000018561557,"teacher_disagreement_score":0.98461944,"about_ca_system_score_codex":0.000038618004,"about_ca_system_score_gemma":0.00021071995,"threshold_uncertainty_score":0.8933277},"labels":[],"label_agreement":null},{"id":"W1982382062","doi":"10.4161/viru.29002","title":"Comparative analysis of virulence and resistance profiles of<i>Salmonella</i>Enteritidis isolates from poultry meat and foodborne outbreaks in northern Jordan","year":2014,"lang":"en","type":"article","venue":"Virulence","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Manitoba Beekeepers' Association","funders":"Deanship of Research, Jordan University of Science and Technology; Centers for Disease Control and Prevention","keywords":"Salmonella enteritidis; Virulence; Outbreak; Biology; Salmonella; Microbiology; Veterinary medicine; Virology; Bacteria; Gene; Medicine; Genetics","score_opus":0.018521049738294288,"score_gpt":0.2375264590922319,"score_spread":0.2190054093539376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982382062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972453,0.0018095376,0.00001958604,0.00018674144,0.000025492707,0.00012159737,0.00019125191,0.000013810958,0.00038668554],"genre_scores_gemma":[0.998991,0.00053078553,0.00030664008,0.00007782734,0.000026465392,0.000008906457,0.00003856783,9.777394e-7,0.000018845523],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984634,0.00027305319,0.00046852685,0.0004572342,0.00011609567,0.0002216708],"domain_scores_gemma":[0.99865955,0.0008107695,0.00026753292,0.00011090085,0.000073998424,0.00007727326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029335127,0.00017909874,0.00070344115,0.00004559929,0.000055341603,0.000014909748,0.00022067025,0.00010078881,0.000024862657],"category_scores_gemma":[0.00009765173,0.000085037565,0.00007869517,0.0005306044,0.00030896376,0.00010463434,0.00009557607,0.00009998597,0.0000019218442],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000093207986,0.000047210844,0.79668695,0.000012735808,0.00006818369,6.865772e-7,0.00034977077,0.000006432099,0.20075297,0.00020549032,0.000006920565,0.0017694555],"study_design_scores_gemma":[0.00013751429,0.00014480489,0.9879204,0.00008708918,0.000095607975,7.286921e-7,0.00071962934,0.00036947927,0.008557765,0.001689005,0.00011510471,0.00016284747],"about_ca_topic_score_codex":0.0021243875,"about_ca_topic_score_gemma":0.01435791,"teacher_disagreement_score":0.1921952,"about_ca_system_score_codex":0.0000075796547,"about_ca_system_score_gemma":0.000004282894,"threshold_uncertainty_score":0.8012051},"labels":[],"label_agreement":null},{"id":"W1986466417","doi":"10.4161/viru.26143","title":"New insights into Shiga toxin-mediated endothelial dysfunction in hemolytic uremic syndrome","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Complement system in diseases","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research","keywords":"Shiga toxin; Biology; Outbreak; Pathogenesis; Disease; Complement system; Atypical hemolytic uremic syndrome; Immunology; Microbiology; Alternative complement pathway; Virology; Virulence; Gene; Genetics; Medicine; Antibody; Pathology","score_opus":0.029213680980880664,"score_gpt":0.2801889966152009,"score_spread":0.25097531563432024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986466417","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0018081091,0.9936257,0.00006300951,0.000015844897,0.0022627949,0.0017699611,0.00008064386,0.00015721668,0.00021671015],"genre_scores_gemma":[0.004241847,0.99184155,0.000043418528,0.00006956346,0.000100121186,0.00041889603,0.00077761634,0.00006628504,0.002440688],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969555,0.0005592474,0.0010607862,0.000790393,0.00010004379,0.00053401105],"domain_scores_gemma":[0.998158,0.0004913945,0.000477052,0.0007512693,0.000042178664,0.00008011743],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016175285,0.0006172648,0.0016153399,0.000548371,0.000102404796,0.000037468206,0.0007861512,0.00064831966,0.0037412005],"category_scores_gemma":[0.00021640187,0.0005119686,0.00031568634,0.0004992601,0.00011194146,0.00018805845,0.0002481181,0.0006309646,0.017624507],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053342337,0.0002893777,0.00011286441,0.012636761,0.00070139667,0.00017744632,0.00038074443,0.0000016197339,0.0034986222,0.0003872617,0.026720742,0.9550398],"study_design_scores_gemma":[0.00077462674,0.00012757374,0.0000745451,0.011163887,0.00030253737,0.00023297845,0.000023264545,0.0000012399157,0.000072067334,0.00020756583,0.9864636,0.0005560937],"about_ca_topic_score_codex":0.0011085859,"about_ca_topic_score_gemma":0.00017501312,"teacher_disagreement_score":0.9597429,"about_ca_system_score_codex":0.00040144956,"about_ca_system_score_gemma":0.0005965335,"threshold_uncertainty_score":0.9997332},"labels":[],"label_agreement":null},{"id":"W1987486130","doi":"10.4161/viru.28690","title":"A tangle of poly-phosphate in<i>Campylobacter</i>","year":2014,"lang":"he","type":"letter","venue":"Virulence","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Tangle; Biology; Phosphate; Computational biology; Biochemistry","score_opus":0.009274296413339902,"score_gpt":0.22860110347663148,"score_spread":0.21932680706329158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987486130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80611914,0.02750127,0.0055544674,0.1442658,0.006320817,0.0018974608,0.0006691354,0.000085303895,0.007586615],"genre_scores_gemma":[0.8841839,0.0060626483,0.00042429182,0.09681254,0.0033613297,0.00005283275,0.0015918984,0.00011149647,0.00739909],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99777335,0.00017359061,0.0006216243,0.0007733724,0.000245605,0.0004124629],"domain_scores_gemma":[0.9984714,0.000015280222,0.00049790536,0.0007910099,0.00015780113,0.00006659824],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024908633,0.00037110152,0.00042904695,0.000119050856,0.00004399264,0.00003143762,0.00043667387,0.00079954445,0.00025300216],"category_scores_gemma":[0.00010291486,0.0003941019,0.00015578605,0.00023826827,0.00025398136,0.000009563795,0.00014777735,0.00045755235,0.00014868005],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001298998,0.00014460435,0.0038618287,0.0005973039,0.00006308745,0.000017383782,0.000120765035,0.000008485276,0.930784,0.000063960804,0.057475936,0.006732747],"study_design_scores_gemma":[0.00037543222,0.00017975125,0.001367139,0.00021896516,0.000025720068,0.000017621638,0.000015127861,0.000021564234,0.38357916,0.000020664684,0.6138191,0.00035975297],"about_ca_topic_score_codex":0.00008076692,"about_ca_topic_score_gemma":0.00002385746,"teacher_disagreement_score":0.55634314,"about_ca_system_score_codex":0.000029147632,"about_ca_system_score_gemma":0.000112117545,"threshold_uncertainty_score":0.9998511},"labels":[],"label_agreement":null},{"id":"W1992073996","doi":"10.4161/viru.21906","title":"Strength in numbers","year":2012,"lang":"en","type":"review","venue":"Virulence","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Caenorhabditis elegans; Innate immune system; Transcriptome; Model organism; Immunity; Organism; Nematode; Host (biology); Pathogen; Acquired immune system; Genome; Proteomics; Computational biology; Immune system; Genetics; Gene; Ecology; Gene expression","score_opus":0.03890102686042545,"score_gpt":0.31014094265744047,"score_spread":0.271239915797015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992073996","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005952161,0.9974493,0.000115818366,0.0000051080883,0.00040373357,0.00027160154,0.000039351886,0.000012845615,0.0011070466],"genre_scores_gemma":[0.0018311673,0.99615335,0.00052755786,0.000064774955,0.0004278174,0.000042160726,0.00017317354,0.00006029329,0.0007197148],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984494,0.00011719663,0.0003734392,0.00048592786,0.00014437565,0.00042967044],"domain_scores_gemma":[0.9990564,0.000014917776,0.00016396865,0.0006277219,0.000021902004,0.000115107],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021656018,0.000359509,0.00059389754,0.000080463964,0.000036500234,0.00002395239,0.00048253432,0.0004483174,0.000069440175],"category_scores_gemma":[0.000037472044,0.00033607805,0.00021526091,0.0001293448,0.00008059971,0.0000030276926,0.00019505144,0.00026743725,0.00022957822],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000003380535,0.00012343386,0.00017256258,0.0033314223,0.00006584753,0.000007870135,0.00012465274,0.000005733949,0.00021597238,0.00006076106,0.0007521063,0.99513626],"study_design_scores_gemma":[0.00008409982,0.000037133548,0.000028405238,0.0006918283,0.000125936,0.000019860683,0.000009362739,0.0000018116945,0.00016101084,0.000015384747,0.9984311,0.0003940786],"about_ca_topic_score_codex":0.000055043896,"about_ca_topic_score_gemma":0.00012284124,"teacher_disagreement_score":0.997679,"about_ca_system_score_codex":0.00003305534,"about_ca_system_score_gemma":0.00015313612,"threshold_uncertainty_score":0.9999091},"labels":[],"label_agreement":null},{"id":"W1999114258","doi":"10.4161/viru.25180","title":"Prediction of molecular mimicry candidates in human pathogenic bacteria","year":2013,"lang":"en","type":"article","venue":"Virulence","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Biology; Molecular mimicry; Virulence; Pathogen; Proteome; Mimicry; Genetics; Eukaryote; Microbiology; Proteomics; Human pathogen; Genome; Computational biology; Bacteria; Gene; Immune system","score_opus":0.008766426407948552,"score_gpt":0.2101240052670407,"score_spread":0.20135757885909214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999114258","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845713,0.0009017166,0.000052935222,0.000021634689,0.000058929385,0.000138049,0.000040142593,0.0000017073659,0.0003277629],"genre_scores_gemma":[0.9991574,0.00026207336,0.00037630618,0.00005359648,0.000030915224,0.000033460634,0.000027243968,0.000008778134,0.000050215156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994372,0.000025107032,0.00016919202,0.00018706924,0.00004830865,0.0001331123],"domain_scores_gemma":[0.9996781,0.000003133926,0.00005153171,0.00019891285,0.000040939885,0.000027391494],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005824233,0.00008374117,0.000094705254,0.00003070315,0.000023622424,0.000006790591,0.00011364237,0.000060457227,0.00002659561],"category_scores_gemma":[0.000013673325,0.00008202828,0.0000367756,0.000048952643,0.000053015658,9.0987197e-7,0.00007611754,0.00003139965,0.0000067253486],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004640422,0.000022453096,0.031115131,0.000010135149,0.000013534016,5.858795e-7,0.000035702178,0.000018804787,0.9681599,0.00002447033,0.000105485364,0.0004891686],"study_design_scores_gemma":[0.00018109175,0.00011679288,0.2475647,0.000010960354,0.000005176296,0.0000018542797,0.000025822606,0.00002261626,0.7512635,0.0002413527,0.00049309473,0.000073050134],"about_ca_topic_score_codex":0.00017436143,"about_ca_topic_score_gemma":0.000028025985,"teacher_disagreement_score":0.21689641,"about_ca_system_score_codex":0.000005754186,"about_ca_system_score_gemma":0.000016905793,"threshold_uncertainty_score":0.33450162},"labels":[],"label_agreement":null},{"id":"W2003836425","doi":"10.4161/viru.36329","title":"Proteomics of effector-triggered immunity (ETI) in plants","year":2014,"lang":"en","type":"review","venue":"Virulence","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Toronto","funders":"","keywords":"Effector; Proteomics; Biology; Computational biology; Plant Immunity; Gene; Genetics; Cell biology; Arabidopsis","score_opus":0.04072114278024562,"score_gpt":0.2842552390008001,"score_spread":0.24353409622055444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003836425","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11888604,0.87892455,0.0000011820897,0.0000066387784,0.00022690331,0.00074992556,0.0006635998,0.000028514118,0.0005126717],"genre_scores_gemma":[0.0051408545,0.9943155,0.00004061941,0.000011030721,0.00006541559,0.000055816716,0.000291389,0.0000016795631,0.00007770721],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99832374,0.00048628612,0.00056805275,0.00024972585,0.00012051921,0.00025170489],"domain_scores_gemma":[0.9985939,0.0007419905,0.0004282113,0.00015463021,0.00003331535,0.00004791616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046933975,0.00026794398,0.0010668942,0.00004617902,0.00008592946,0.000029677702,0.00068352936,0.00026749432,0.00016796068],"category_scores_gemma":[0.00013592781,0.00009831809,0.00025501,0.000328552,0.000066301676,0.00008567134,0.00015070348,0.00056708226,0.00017221087],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015549764,0.0001314512,0.000045168337,0.0016684843,0.000019979234,0.000003431327,0.0000124060625,2.445308e-7,0.014989614,0.0000059909726,0.00012445822,0.98298323],"study_design_scores_gemma":[0.000069224974,0.00015796981,0.0013147217,0.011893932,0.00003559798,0.00003838338,0.000012948995,0.000005135627,0.00076249253,0.000019906378,0.9853787,0.00031098668],"about_ca_topic_score_codex":0.0017630863,"about_ca_topic_score_gemma":0.0004427915,"teacher_disagreement_score":0.9852542,"about_ca_system_score_codex":0.000054998094,"about_ca_system_score_gemma":0.00002858877,"threshold_uncertainty_score":0.40092954},"labels":[],"label_agreement":null},{"id":"W2003935269","doi":"10.4161/viru.19355","title":"A Burkholderia cepacia complex non-ribosomal peptide-synthesized toxin is hemolytic and required for full virulence","year":2012,"lang":"en","type":"article","venue":"Virulence","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Biology; Virulence; Microbiology; Burkholderia; Gene cluster; Hemolysis; Toxin; Structural gene; Gene; Genetics; Bacteria; Escherichia coli","score_opus":0.051679309013029355,"score_gpt":0.247327755704606,"score_spread":0.19564844669157663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003935269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99664974,0.0004461967,0.00005340797,0.0009827217,0.0002016258,0.00051345985,0.00068122684,0.00008866811,0.00038297335],"genre_scores_gemma":[0.996522,0.00021852444,0.0018469711,0.0006220692,0.00037382805,0.00011954041,0.00003674135,0.000003071577,0.00025726587],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99820286,0.00006156567,0.00031906724,0.00046756395,0.00021397887,0.00073493476],"domain_scores_gemma":[0.99896985,0.00047853106,0.0001551872,0.00011777174,0.000060899838,0.00021775898],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036694328,0.000290486,0.0003878964,0.000015776419,0.00038304774,0.00007761722,0.00033374934,0.00012154087,0.00025490613],"category_scores_gemma":[0.00017358083,0.00013260878,0.000112884656,0.0001954569,0.00019316285,0.0003790991,0.00019591625,0.00008668734,0.000105271734],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012761763,0.00006482659,0.0034174817,0.000027529124,0.000019722273,0.000001917659,0.0002759888,5.673995e-8,0.9886063,0.0000685266,0.0014872613,0.005902776],"study_design_scores_gemma":[0.001109437,0.00080734486,0.71858776,0.00026263404,0.00013304001,0.0001707926,0.00083373976,0.0005507485,0.22322007,0.00064227346,0.052283086,0.0013990677],"about_ca_topic_score_codex":0.00006982927,"about_ca_topic_score_gemma":0.00006404671,"teacher_disagreement_score":0.7653862,"about_ca_system_score_codex":0.000030165156,"about_ca_system_score_gemma":0.000009331448,"threshold_uncertainty_score":0.5407629},"labels":[],"label_agreement":null},{"id":"W2004324618","doi":"10.4161/viru.2.3.15894","title":"A comprehensive study of the contribution of<i>Salmonella enterica</i>serovar Typhimurium SPI2 effectors to bacterial colonization, survival, and replication in typhoid fever, macrophage, and epithelial cell infection models","year":2011,"lang":"en","type":"article","venue":"Virulence","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Michael Smith Health Research BC; University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Salmonella enterica; Biology; Salmonella; Microbiology; Typhoid fever; Virulence; Effector; Virology; Pathogenicity island; Serotype; Salmonella typhi; Type three secretion system; Bacteria; Immunology; Escherichia coli; Gene","score_opus":0.03299148189463427,"score_gpt":0.23705583995931107,"score_spread":0.2040643580646768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004324618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99889517,0.00006500552,0.0000388861,0.000031552157,0.00025157884,0.0006511358,0.000026565978,0.000011660308,0.000028422633],"genre_scores_gemma":[0.99970925,0.00015363071,0.000022981483,0.0000393592,0.000033505017,0.000024291101,0.000008676435,0.0000012309702,0.000007089697],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99878234,0.0003812759,0.00030173542,0.00031015082,0.000090015455,0.00013450577],"domain_scores_gemma":[0.99933165,0.00017162008,0.00019950401,0.000119177406,0.0001332607,0.000044761815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002635465,0.00010999582,0.0002408937,0.00001943278,0.000065955544,0.000007896905,0.00012147415,0.00007825832,0.000012817182],"category_scores_gemma":[0.000096459524,0.000049870978,0.00002606534,0.00032554418,0.00007973006,0.00007831927,0.00011712264,0.0000648792,0.0000015762969],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018311272,0.0001819983,0.38364962,0.000008745384,0.0000052503506,3.8092656e-7,0.00034451432,0.00002088708,0.61472255,0.00003637473,0.000007024444,0.0008395633],"study_design_scores_gemma":[0.00037576284,0.00066107657,0.95077527,0.000016911044,0.000014279621,0.0000022540876,0.000106640415,0.00012727041,0.047536295,0.00021615712,0.000087059714,0.00008102703],"about_ca_topic_score_codex":0.00287575,"about_ca_topic_score_gemma":0.00053788716,"teacher_disagreement_score":0.56718624,"about_ca_system_score_codex":0.000015045982,"about_ca_system_score_gemma":0.0000054702264,"threshold_uncertainty_score":0.43472928},"labels":[],"label_agreement":null},{"id":"W2007798571","doi":"10.4161/viru.22496","title":"Turning up Francisella pathogenesis","year":2012,"lang":"en","type":"letter","venue":"Virulence","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Lipid A; Bacterial outer membrane; Biology; Lipopolysaccharide; Lipid metabolism; Biochemistry; Yersinia; Escherichia coli; Bacteria; Cell biology; Microbiology; Gene; Genetics","score_opus":0.020288309304705814,"score_gpt":0.25892056895630977,"score_spread":0.23863225965160395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007798571","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5330469,0.103086226,0.013034144,0.2603482,0.03477154,0.0046739476,0.0039064996,0.00048655222,0.046646003],"genre_scores_gemma":[0.20123447,0.007728422,0.0011964712,0.6699957,0.060268596,0.00032179098,0.0036416843,0.00055028044,0.055062547],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.997596,0.00014651945,0.0002918502,0.00067799713,0.00042838918,0.00085921626],"domain_scores_gemma":[0.9986982,0.000034954865,0.00014005264,0.0008321212,0.00015378889,0.00014092383],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032814077,0.0003972543,0.00033155098,0.000080125836,0.00014139882,0.00006985902,0.00062052003,0.0012931405,0.0005082076],"category_scores_gemma":[0.00013663863,0.00036949833,0.00022710243,0.00012676767,0.00014052246,0.0000048449774,0.000266554,0.00083591964,0.00057936565],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031877677,0.000010813538,0.00016472548,0.00009733448,0.00003779765,0.000029156681,0.000022185572,0.0000014034285,0.46555492,0.000001738741,0.523085,0.010963046],"study_design_scores_gemma":[0.00018559075,0.00007870806,0.0003402342,0.000039354843,0.000027212196,0.00002281501,0.0000033611984,0.000006935596,0.033650804,0.000017636406,0.9651675,0.00045980327],"about_ca_topic_score_codex":0.00003175531,"about_ca_topic_score_gemma":0.0000036774625,"teacher_disagreement_score":0.44208255,"about_ca_system_score_codex":0.000024336727,"about_ca_system_score_gemma":0.0001290386,"threshold_uncertainty_score":0.9998757},"labels":[],"label_agreement":null},{"id":"W2008958871","doi":"10.4161/viru.23326","title":"Early diagnosis of resistant pathogens","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Society of Microbiologists","funders":"","keywords":"Antimicrobial; Biology; Colistin; Multiple drug resistance; Tuberculosis; Drug resistance; Antibiotic resistance; Microbiology; Virology; Antibiotics; Medicine","score_opus":0.02840017380635817,"score_gpt":0.2970188565627211,"score_spread":0.2686186827563629,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008958871","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009007081,0.98944265,0.000042326534,0.000002935691,0.0001956344,0.00048091006,0.0002672989,0.000009741418,0.00055144215],"genre_scores_gemma":[0.00062417047,0.9972454,0.0009572491,0.000012658279,0.00016802015,0.00009815819,0.000105799714,0.00005943016,0.00072913716],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982665,0.00013465335,0.0005987619,0.0005398786,0.00017700759,0.000283201],"domain_scores_gemma":[0.9983649,0.00004361934,0.0004959252,0.0009175147,0.000096188625,0.00008184051],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014761406,0.0003499222,0.0008811687,0.00006363199,0.000037695983,0.000027075597,0.00058762426,0.0004360391,0.00009809862],"category_scores_gemma":[0.00015802888,0.00028587753,0.00039651484,0.0001497864,0.0001798816,0.0000034454508,0.00019965875,0.00013379296,0.00013498911],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022335553,0.00010214354,0.0005681125,0.011747704,0.0002488568,0.000016547914,0.000015214463,1.00786494e-7,0.007803476,0.00012861655,0.0040584463,0.97528845],"study_design_scores_gemma":[0.00005394877,0.00015134408,0.00026541777,0.004482575,0.0001831464,0.000005456516,0.00000421497,1.0161037e-7,0.0012732899,0.0000145319555,0.99323636,0.0003295926],"about_ca_topic_score_codex":0.000032875443,"about_ca_topic_score_gemma":0.0000050250324,"teacher_disagreement_score":0.98917794,"about_ca_system_score_codex":0.000020431331,"about_ca_system_score_gemma":0.00016913249,"threshold_uncertainty_score":0.99995935},"labels":[],"label_agreement":null},{"id":"W2017170089","doi":"10.4161/viru.2.1.13807","title":"Human rhinovirus recognition in non-immune cells is mediated by<i>Toll</i>-like receptors and MDA-5, which trigger a synergetic pro-inflammatory immune response","year":2011,"lang":"en","type":"article","venue":"Virulence","topic":"Respiratory viral infections research","field":"Medicine","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Pattern recognition receptor; Rhinovirus; Innate immune system; MDA5; RIG-I; TLR2; Immune system; TLR7; Pathogen-associated molecular pattern; Virology; IRF3; Toll-like receptor; Pathogen; Immunology; Microbiology; Virus; RNA interference; RNA; Gene; Genetics","score_opus":0.03744267366263369,"score_gpt":0.2992323242076173,"score_spread":0.2617896505449836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017170089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995602,0.0011607213,0.000020385562,0.00016330215,0.0003219679,0.0013472954,0.000028659657,0.00013300528,0.0012226799],"genre_scores_gemma":[0.99536926,0.0008016807,0.00016097425,0.00034554148,0.00005091114,0.0003341204,0.000030891813,0.000082488215,0.00282411],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964445,0.00061324955,0.0009588796,0.0007236433,0.0005953445,0.00066437287],"domain_scores_gemma":[0.9981967,0.00021072553,0.0002320301,0.0007381472,0.0003223626,0.00030003794],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0021669872,0.0003804141,0.00058078405,0.00084044074,0.00023731061,0.000052499345,0.00026107818,0.00032747406,0.0012705242],"category_scores_gemma":[0.0005568533,0.00035959797,0.00009941095,0.0011805794,0.0003495133,0.00046053904,0.000148577,0.00086159515,0.0009546959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022061048,0.0004804584,0.008177582,0.00021356263,0.000059371523,0.00011507586,0.0011323852,3.9759436e-7,0.97931063,0.0000029061785,0.0035022944,0.004799225],"study_design_scores_gemma":[0.0047433884,0.0021341112,0.21758288,0.0009377061,0.000090827685,0.00006131728,0.00021059703,0.00017422979,0.761535,0.000093899005,0.011677377,0.00075866963],"about_ca_topic_score_codex":0.00069841655,"about_ca_topic_score_gemma":0.000075568874,"teacher_disagreement_score":0.21777564,"about_ca_system_score_codex":0.00024225061,"about_ca_system_score_gemma":0.00025574182,"threshold_uncertainty_score":0.9998856},"labels":[],"label_agreement":null},{"id":"W2022387905","doi":"10.4161/viru.24530","title":"Biomarkers of endothelial activation/dysfunction in infectious diseases","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Blood Coagulation and Thrombosis Mechanisms","field":"Medicine","cited_by":276,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"","keywords":"Immunology; Endothelial dysfunction; Endothelial activation; Sepsis; Von Willebrand factor; Dengue fever; Thrombomodulin; Biology; Endothelium; Septic shock; Endothelial stem cell; Pathogenesis; Context (archaeology); Medicine; Inflammation; Platelet; Internal medicine; Thrombin","score_opus":0.04510451385688652,"score_gpt":0.32018723892093526,"score_spread":0.27508272506404874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022387905","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00045296433,0.9952999,0.0004935949,0.00002212924,0.00048654227,0.0015151625,0.000055954475,0.00009212782,0.0015816352],"genre_scores_gemma":[0.0046208077,0.99466336,0.000102513644,0.000053006905,0.00010971645,0.00017412369,0.000078410936,0.000033677694,0.00016440665],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987207,0.00009757131,0.0005037058,0.00028469713,0.00024163305,0.00015171073],"domain_scores_gemma":[0.9990816,0.00011718095,0.0003408246,0.00030833593,0.00006925303,0.00008280847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009390174,0.0002316225,0.0009820502,0.00043146196,0.000025219917,0.000011034762,0.00008264828,0.00021230034,0.00039497425],"category_scores_gemma":[0.00014639835,0.00018532028,0.00024501595,0.0005113289,0.000052379706,0.00011363413,0.000032749555,0.00017916677,0.00014250692],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001161523,0.0002156594,0.00016300853,0.006971934,0.00014004348,0.0000022838647,0.000014946617,5.030494e-7,0.00023214065,0.0006532656,0.0001191314,0.99147546],"study_design_scores_gemma":[0.0029246197,0.0006163037,0.0024301887,0.051020343,0.0024660314,0.000066310815,0.000042660045,0.00010040876,0.0009902751,0.0011694401,0.93737316,0.0008002794],"about_ca_topic_score_codex":0.00009853559,"about_ca_topic_score_gemma":0.000003624717,"teacher_disagreement_score":0.9906752,"about_ca_system_score_codex":0.00010599466,"about_ca_system_score_gemma":0.00023283863,"threshold_uncertainty_score":0.7557142},"labels":[],"label_agreement":null},{"id":"W2036522322","doi":"10.4161/viru.2.3.16133","title":"Humanized mice for<i>Salmonella</i><i>typhi</i>infection: new tools for an old problem","year":2011,"lang":"en","type":"article","venue":"Virulence","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Typhoid fever; Salmonella typhi; Salmonella enterica; Biology; Antimicrobial; Virology; Salmonella; Human pathogen; Immunology; Microbiology; Bacteria","score_opus":0.1684334666364751,"score_gpt":0.2809483186382974,"score_spread":0.11251485200182229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036522322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993781,0.00016204797,0.0013629127,0.0003040604,0.00038222698,0.0010211834,0.000059265618,0.00021532044,0.0027120414],"genre_scores_gemma":[0.9858703,0.00015999927,0.008518284,0.0019937875,0.0011976499,0.0002895814,0.00012538853,0.0000051399375,0.0018398449],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99847853,0.00008034644,0.00033378653,0.0005490651,0.000088257715,0.00047002095],"domain_scores_gemma":[0.9989678,0.00046016133,0.00015695461,0.00011575815,0.00010659977,0.0001926777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042807285,0.00020895738,0.00028669878,0.000012335596,0.00026528852,0.000063173764,0.0003607652,0.00017886897,0.0002511384],"category_scores_gemma":[0.0001062477,0.000092556096,0.00017469432,0.0001750708,0.000061829756,0.00040691675,0.000046645957,0.00008979497,0.000059380345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081734307,0.0003947777,0.017681612,0.000053242362,0.00005726197,0.0000023161442,0.00091544184,0.0000044097487,0.68141234,0.01210279,0.013524751,0.2730337],"study_design_scores_gemma":[0.002730825,0.00953016,0.2974581,0.00013202874,0.00023563011,0.00008699092,0.0006482165,0.0004446753,0.09275888,0.13669275,0.45698962,0.0022921336],"about_ca_topic_score_codex":0.0014157695,"about_ca_topic_score_gemma":0.0011353478,"teacher_disagreement_score":0.58865345,"about_ca_system_score_codex":0.000018996463,"about_ca_system_score_gemma":0.000014891952,"threshold_uncertainty_score":0.3774328},"labels":[],"label_agreement":null},{"id":"W2036717621","doi":"10.4161/viru.26908","title":"The PIRO (predisposition, insult, response, organ dysfunction) model","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Insult; Disease; Intensive care medicine; Medicine; Confounding; Organ dysfunction; Population; Harm; Genetic predisposition; Bioinformatics; Sepsis; Pathology; Immunology; Biology; Psychology","score_opus":0.15127256434588052,"score_gpt":0.38871876522652343,"score_spread":0.23744620088064292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036717621","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015920623,0.9962609,0.000094650466,0.00065931125,0.00032642868,0.0014497776,0.00005967707,0.00010047696,0.0008895657],"genre_scores_gemma":[0.00012686475,0.993516,0.00026324988,0.00037233677,0.00019921082,0.001145366,0.00009319623,0.00006686772,0.004216879],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980458,0.00018924146,0.000561547,0.0004904229,0.00038740647,0.00032556875],"domain_scores_gemma":[0.9977604,0.0006960143,0.0002575588,0.00093074184,0.00017144132,0.00018380706],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003344935,0.00041802065,0.0009214725,0.000118205804,0.0003244876,0.00008744348,0.000242177,0.00021883541,0.00015063751],"category_scores_gemma":[0.00032440346,0.00022074765,0.00037696905,0.0003663165,0.00011488988,0.000092229646,0.00008029118,0.000396989,0.001976931],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007087586,0.00019509615,0.000015943702,0.001105093,0.0002329552,0.000020463218,0.000028433651,0.0000022026682,0.0000022987772,0.00022008215,0.017578596,0.98052794],"study_design_scores_gemma":[0.00035029053,0.00022651425,0.00023624551,0.0065747662,0.0012730128,0.00007934884,0.00000982511,0.00012775748,0.000009310943,0.00010911478,0.9907848,0.00021899099],"about_ca_topic_score_codex":0.000022607683,"about_ca_topic_score_gemma":0.0000036789247,"teacher_disagreement_score":0.98030895,"about_ca_system_score_codex":0.00031925098,"about_ca_system_score_gemma":0.0005458024,"threshold_uncertainty_score":0.99880016},"labels":[],"label_agreement":null},{"id":"W2037777347","doi":"10.4161/viru.20979","title":"Uncovering cellular circuitry controlling temperature-dependent fungal morphogenesis","year":2012,"lang":"en","type":"review","venue":"Virulence","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Morphogenesis; Cell biology; Candida albicans; Fungal protein; Genetics; Saccharomyces cerevisiae; Yeast; Gene","score_opus":0.037391386573258176,"score_gpt":0.30872044620168876,"score_spread":0.27132905962843057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037777347","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0016447889,0.9958343,0.00043947325,0.0000037384555,0.00040105594,0.0009978558,0.00016691687,0.000033016942,0.0004788578],"genre_scores_gemma":[0.0074740173,0.98887914,0.00013229069,0.00003500184,0.0013906214,0.00033898043,0.00020019557,0.00014678604,0.0014029676],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99669814,0.00037716707,0.00059790903,0.0008951173,0.00054184167,0.00088981306],"domain_scores_gemma":[0.9982216,0.00004786103,0.00019190293,0.0011090765,0.00011255201,0.0003170598],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007773583,0.0006001337,0.0010553044,0.00014741329,0.00018448285,0.00009987202,0.0008454128,0.00092573225,0.00010850003],"category_scores_gemma":[0.00015857174,0.0005325302,0.00052700547,0.00023458495,0.00008532059,0.000009305666,0.0004605818,0.00065419404,0.0003709704],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024585674,0.00009417738,0.000038785234,0.008145541,0.00036575366,0.00010109411,0.000008992117,0.00003074802,0.36178833,0.0000148459085,0.00008573616,0.62930137],"study_design_scores_gemma":[0.00021032995,0.00007929952,0.0000017466714,0.0015462681,0.00025013677,0.000093629315,0.0000048626225,0.0000023213959,0.05718419,0.000003674058,0.93998647,0.0006370695],"about_ca_topic_score_codex":0.000039802537,"about_ca_topic_score_gemma":0.0000066376274,"teacher_disagreement_score":0.93990076,"about_ca_system_score_codex":0.00012966171,"about_ca_system_score_gemma":0.00059005147,"threshold_uncertainty_score":0.99971265},"labels":[],"label_agreement":null},{"id":"W2040235050","doi":"10.4161/viru.25740","title":"Emerging therapeutic strategies to prevent infection-related microvascular endothelial activation and dysfunction","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Sphingolipid Metabolism and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Centre for Global Health Research; Toronto General Hospital; University Health Network","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Endothelial dysfunction; Immunology; Intensive care medicine; Microbiology; Medicine","score_opus":0.01859987545000222,"score_gpt":0.29264687539804546,"score_spread":0.2740469999480432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040235050","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011566928,0.98193216,0.005183591,0.000008836567,0.00044691673,0.00073373143,0.000007213852,0.000027094951,0.000093537295],"genre_scores_gemma":[0.0025172934,0.99636036,0.00015329145,0.00005558546,0.00037399292,0.00017242918,0.00008688382,0.00004289295,0.0002372531],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987214,0.0001333935,0.00032985574,0.00048091056,0.00012141903,0.00021298167],"domain_scores_gemma":[0.99938416,0.000016621196,0.00017509366,0.00029595892,0.000057626625,0.000070527974],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020663874,0.0003014793,0.00043362624,0.000118538,0.00011330167,0.000097714284,0.00012109502,0.0002809797,0.00003700119],"category_scores_gemma":[0.00004113953,0.0002557503,0.0001897852,0.0001674614,0.000032800785,0.00001745443,0.00008289592,0.00016783524,0.000041546773],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000049695072,0.000029171712,0.000003489973,0.0010766825,0.00021886424,3.0863103e-7,0.000056874494,0.000041414434,0.09967617,0.000111808884,0.000059755886,0.8987205],"study_design_scores_gemma":[0.00013449158,0.00007239777,0.000023986386,0.001101834,0.0002689378,0.00001750348,0.000022115408,0.000009211056,0.013302298,0.00006274069,0.984651,0.00033344183],"about_ca_topic_score_codex":0.00011879013,"about_ca_topic_score_gemma":0.00000417494,"teacher_disagreement_score":0.9845913,"about_ca_system_score_codex":0.000019988409,"about_ca_system_score_gemma":0.0001227559,"threshold_uncertainty_score":0.99998945},"labels":[],"label_agreement":null},{"id":"W2046861479","doi":"10.4161/viru.24498","title":"Importance of prophages to evolution and virulence of bacterial pathogens","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":581,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Virulence; Biology; Prophage; Microbiology; Pathogen; Genetics; Virology; Bacteriophage; Escherichia coli; Gene","score_opus":0.02153174123941335,"score_gpt":0.28075051716584,"score_spread":0.2592187759264266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046861479","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0644625,0.9317319,0.0002540521,0.00001526002,0.000551448,0.0017173869,0.0006028087,0.000031954336,0.0006327236],"genre_scores_gemma":[0.004213144,0.99290836,0.0022349148,0.0000169353,0.000062506966,0.00010695898,0.000018637777,0.000031396798,0.00040716806],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983039,0.00008522133,0.0006875775,0.000498416,0.00017281731,0.00025208332],"domain_scores_gemma":[0.9987657,0.000057832283,0.0005839042,0.0004468718,0.000025320425,0.0001203705],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015936214,0.0003000881,0.0008427716,0.00008006483,0.000055056327,0.00002170712,0.00037259492,0.0001497068,0.0019340945],"category_scores_gemma":[0.000068239475,0.00024699073,0.00016881853,0.00032426362,0.00025648362,0.00028181897,0.00040420724,0.0001656283,0.0003587436],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000857657,0.00008019578,0.00007204818,0.0025644908,0.000025898114,0.0000035840349,0.00010957293,0.0000015376743,0.1708782,0.000024905297,0.00055883435,0.82567215],"study_design_scores_gemma":[0.00016231833,0.00039200258,0.00662282,0.008488681,0.00041650134,0.00009986154,0.000034963796,0.00001047614,0.002719786,0.000056634257,0.9801592,0.0008367379],"about_ca_topic_score_codex":0.00036415603,"about_ca_topic_score_gemma":0.000062574334,"teacher_disagreement_score":0.97960037,"about_ca_system_score_codex":0.00013191823,"about_ca_system_score_gemma":0.00004281913,"threshold_uncertainty_score":0.9999982},"labels":[],"label_agreement":null},{"id":"W2054583152","doi":"10.4161/viru.1.6.13801","title":"<i>Campylobacter jejuni</i>free oligosaccharides: Function and fate","year":2010,"lang":"en","type":"article","venue":"Virulence","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre","funders":"Alberta Glycomics Centre","keywords":"Periplasmic space; Campylobacter jejuni; Biochemistry; Biology; Asparagine; Bacterial outer membrane; Glycoprotein; Glycobiology; Glycan; Microbiology; Enzyme; Bacteria; Escherichia coli; Gene","score_opus":0.01181810575607181,"score_gpt":0.20435438464278588,"score_spread":0.19253627888671407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054583152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964515,0.000102843296,0.000014561233,0.0011665038,0.0005428375,0.00009863763,0.000030075444,0.000102562175,0.0014904655],"genre_scores_gemma":[0.99787784,0.00012467992,0.00013070898,0.0012926885,0.00036847548,0.000013636902,0.000016473852,0.0000010207876,0.00017448812],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989787,0.00005630796,0.00018722977,0.00036437908,0.00010523718,0.0003081819],"domain_scores_gemma":[0.9993964,0.00021978031,0.00007547218,0.00013299282,0.000039885996,0.0001355056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002784935,0.00014783158,0.00016278059,0.00001089704,0.00016218715,0.000051228588,0.00030336078,0.00015149185,0.0007241319],"category_scores_gemma":[0.00014204207,0.000057576533,0.000051629617,0.00016109397,0.0001350302,0.00017856841,0.0001373806,0.00023629554,0.00014292843],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028312777,0.00003333352,0.100150935,0.000003146626,0.000006182289,0.0000020923392,0.000017444887,1.5771238e-7,0.843315,0.002146414,0.00083051994,0.053466428],"study_design_scores_gemma":[0.00013945045,0.00019577566,0.94222945,0.000008386041,0.000013571248,0.000029766223,0.00004840777,0.00003119966,0.003296581,0.01670295,0.03708556,0.00021889574],"about_ca_topic_score_codex":0.0002384584,"about_ca_topic_score_gemma":0.0005884367,"teacher_disagreement_score":0.8420785,"about_ca_system_score_codex":0.000004653291,"about_ca_system_score_gemma":0.0000040762275,"threshold_uncertainty_score":0.7928736},"labels":[],"label_agreement":null},{"id":"W2056160822","doi":"10.4161/viru.22219","title":"Deformed wing virus","year":2012,"lang":"en","type":"letter","venue":"Virulence","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Environment Research Council; Fonds Québécois de la Recherche sur la Nature et les Technologies; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Deformed wing virus; Varroa destructor; Biology; Varroa; Virus; Archipelago; Mite; Adaptation (eye); Ecology; Zoology; Virology","score_opus":0.053659639913687746,"score_gpt":0.2614589637687687,"score_spread":0.20779932385508096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056160822","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3658146,0.0027385775,0.0000059317495,0.5839829,0.0019240008,0.0008119904,0.00057446683,0.00040071743,0.043746855],"genre_scores_gemma":[0.18313596,0.0005241215,0.000103822174,0.77508914,0.031827904,0.000097124714,0.001143736,0.0000071928625,0.008071017],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981787,0.00010009615,0.00017843542,0.00028968827,0.00048794437,0.00076513906],"domain_scores_gemma":[0.9993099,0.0003819826,0.000076347016,0.00008642304,0.000057348512,0.000087977845],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00025096102,0.00021848545,0.00021512927,0.00001849207,0.00021931267,0.0000883161,0.00053912075,0.00055303064,0.0056317993],"category_scores_gemma":[0.000060702434,0.0000712154,0.00012405122,0.00024238967,0.00008232672,0.00014058435,0.00011911476,0.0011908106,0.0018202245],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008843409,0.000019430903,0.00082307094,0.000048016696,0.00001401884,0.000103502614,0.000040963852,1.3645635e-7,0.06248736,0.000021051219,0.87356937,0.06286422],"study_design_scores_gemma":[0.000023637565,0.000064473716,0.0071543395,0.000051530405,0.000011191865,0.00001763206,0.0000064445567,0.0000056113486,0.0016787385,0.00032037596,0.9903967,0.0002693534],"about_ca_topic_score_codex":0.0009941667,"about_ca_topic_score_gemma":0.00017415792,"teacher_disagreement_score":0.19110626,"about_ca_system_score_codex":0.00004443777,"about_ca_system_score_gemma":0.00001662034,"threshold_uncertainty_score":0.998957},"labels":[],"label_agreement":null},{"id":"W2063703557","doi":"10.4161/21505594.2014.960726","title":"What is a pathogen? Toward a process view of host-parasite interactions","year":2014,"lang":"en","type":"review","venue":"Virulence","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":175,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"University of Exeter","keywords":"Biology; Host (biology); Pathogen; Virulence; Pathogenicity; Evolutionary biology; Relevance (law); Computational biology; Ecology; Genetics; Microbiology; Gene","score_opus":0.025560766781296214,"score_gpt":0.3652154772202018,"score_spread":0.3396547104389056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063703557","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000112922506,0.9964556,0.0021274448,0.00003233897,0.00043240146,0.00038917843,0.00015773786,0.000011213283,0.0002811652],"genre_scores_gemma":[0.00033270652,0.997571,0.00026774066,0.0002521102,0.00014159006,0.00010088335,0.0002617076,0.000037993595,0.0010342789],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984932,0.0001095654,0.00051108666,0.00050957344,0.00015970267,0.0002169015],"domain_scores_gemma":[0.9987513,0.000018331526,0.00038931076,0.0005911152,0.0001616524,0.00008828451],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015405938,0.0003149629,0.00074409833,0.00007642346,0.000040857285,0.000038674167,0.0004260654,0.00026733038,0.000060068603],"category_scores_gemma":[0.00005152386,0.00027610644,0.000396799,0.00019223531,0.00009829859,0.000007990514,0.00012749924,0.00017459388,0.00009990097],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010149263,0.000102586135,0.00001073098,0.014978628,0.00017452,0.0000019537658,0.0001357863,0.0000054591746,0.0009983819,0.00004173827,0.000785002,0.98275506],"study_design_scores_gemma":[0.00007369779,0.00010563855,0.0000053469475,0.005223367,0.00019554698,0.00004346663,0.000032597352,0.00005786363,0.00015703091,0.000020510633,0.9937928,0.0002921462],"about_ca_topic_score_codex":0.000004348747,"about_ca_topic_score_gemma":0.000012840244,"teacher_disagreement_score":0.9930078,"about_ca_system_score_codex":0.000016772427,"about_ca_system_score_gemma":0.00022872696,"threshold_uncertainty_score":0.9999691},"labels":[],"label_agreement":null},{"id":"W2066025123","doi":"10.4161/viru.26913","title":"An alternate pathophysiologic paradigm of sepsis and septic shock","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Manitoba Beekeepers' Association; Health Sciences Centre","funders":"","keywords":"Septic shock; Intensive care medicine; Antimicrobial; Sepsis; Medicine; Case fatality rate; Infectious disease (medical specialty); Shock (circulatory); Disease; Immunology; Biology; Internal medicine; Microbiology; Epidemiology","score_opus":0.14972062070545522,"score_gpt":0.4058202397577387,"score_spread":0.25609961905228346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066025123","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010828101,0.987859,0.0000026484963,0.000024804594,0.000085566266,0.00086525583,0.00004668852,0.00003310245,0.00025484306],"genre_scores_gemma":[0.003988853,0.99496466,0.00039195112,0.00013590945,0.00008182634,0.00026712878,0.000059914746,0.00003547465,0.00007427539],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985596,0.00009660307,0.00044496448,0.0004953311,0.0001786006,0.00022493249],"domain_scores_gemma":[0.99873245,0.00014598829,0.0002909905,0.0006158786,0.000033699343,0.00018099311],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007998425,0.00036083758,0.0016117645,0.00011363467,0.000031208943,0.000018221264,0.00015188068,0.0001651047,0.00018681258],"category_scores_gemma":[0.00002788509,0.00022497751,0.00028169507,0.0001381961,0.00009806198,0.000068925554,0.000052502597,0.00018372845,0.0001886309],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000310427,0.00028458127,0.00034545627,0.007091572,0.00019455748,0.00004848977,0.000022933677,2.7277312e-7,0.000020843854,0.000078060264,0.00014799224,0.99176216],"study_design_scores_gemma":[0.0016211903,0.004891264,0.008291209,0.07190792,0.009364279,0.0003451158,0.000029396957,0.00016046343,0.00016804716,0.0019730062,0.89981806,0.0014300188],"about_ca_topic_score_codex":0.00007514142,"about_ca_topic_score_gemma":0.0000013574145,"teacher_disagreement_score":0.9903321,"about_ca_system_score_codex":0.00005154109,"about_ca_system_score_gemma":0.000078876656,"threshold_uncertainty_score":0.9174317},"labels":[],"label_agreement":null},{"id":"W2066460368","doi":"10.4161/viru.2.4.17044","title":"New surprises from within the black box of fungal melanization","year":2011,"lang":"en","type":"letter","venue":"Virulence","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Melanin; Cryptococcus neoformans; Fungus; Appressorium; Cryptococcosis; Meningoencephalitis; Virulence; Pathogenesis; Disease; Microbiology; Pathogenic fungus; Immunology; Genetics; Gene; Botany; Pathology; Medicine","score_opus":0.030747763931980806,"score_gpt":0.24859480360453196,"score_spread":0.21784703967255115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066460368","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12748222,0.016776042,0.011969771,0.72633845,0.008964878,0.0032387918,0.00095931836,0.0006167699,0.10365378],"genre_scores_gemma":[0.31703696,0.0032599322,0.005758373,0.5994481,0.017898416,0.000061965395,0.000562827,0.00024775355,0.055725668],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99903184,0.000050851722,0.00028671653,0.00023829809,0.00025965707,0.00013261635],"domain_scores_gemma":[0.9990108,0.0001575847,0.00021641102,0.0004347761,0.00014893129,0.000031516378],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009087576,0.0001862702,0.00035213897,0.00006415292,0.00007442026,0.000012767065,0.0001447012,0.00027060622,0.00041364087],"category_scores_gemma":[0.00015462923,0.00011439299,0.0000988066,0.00017731126,0.00015801941,0.000045099823,0.0000614607,0.00070309965,0.00015739587],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026805505,0.000018707024,0.008230503,0.00008354881,0.00017475062,0.00003621078,0.00081231404,0.0000029405387,0.00038563172,0.00009854274,0.98986256,0.00026748478],"study_design_scores_gemma":[0.0013716446,0.0010215912,0.081052996,0.0020944579,0.002058544,0.00007019945,0.0005175617,0.00011605634,0.020937612,0.0037587904,0.8860811,0.00091943814],"about_ca_topic_score_codex":0.003213271,"about_ca_topic_score_gemma":0.00007789411,"teacher_disagreement_score":0.18955474,"about_ca_system_score_codex":0.000025725896,"about_ca_system_score_gemma":0.00012562379,"threshold_uncertainty_score":0.4857526},"labels":[],"label_agreement":null},{"id":"W2068938248","doi":"10.4161/viru.2.5.16342","title":"The M protein of group A Streptococcus is a key virulence factor and a clinically relevant strain identification marker","year":2011,"lang":"en","type":"review","venue":"Virulence","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Abbott (Canada)","funders":"","keywords":"Biology; Virulence; Typing; Streptococcus pyogenes; Streptococcus; Group A; Outbreak; Antigen; Genotyping; Epitope; Virulence factor; Microbiology; Immunology; Virology; Genetics; Genotype; Bacteria; Medicine; Staphylococcus aureus; Gene","score_opus":0.0724054429178853,"score_gpt":0.36986529296146164,"score_spread":0.29745985004357633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068938248","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0030095554,0.9893536,0.00017244622,0.000045508506,0.00016865476,0.0060301283,0.00063089514,0.00006641293,0.00052282464],"genre_scores_gemma":[0.0023568324,0.9945617,0.00039648783,0.00002357839,0.00006239226,0.0014636734,0.00003624245,0.000047803052,0.0010513177],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970431,0.0002216771,0.0013918253,0.0007223797,0.00029746085,0.00032360115],"domain_scores_gemma":[0.9972329,0.00039147167,0.0010108855,0.0010194592,0.00016368486,0.00018156644],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004941297,0.0004439204,0.0011339022,0.00013287122,0.00017632029,0.000058971676,0.00026472498,0.00033846413,0.00022974746],"category_scores_gemma":[0.0004553369,0.00026348938,0.00045795835,0.00034986288,0.0004098438,0.000108789296,0.00012507346,0.00047614987,0.00012705875],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052866264,0.00028311223,0.0009904103,0.0038326024,0.0003369616,0.000011719082,0.00008868131,2.4142177e-9,0.000105871295,0.00038960524,0.00005128675,0.9938569],"study_design_scores_gemma":[0.0011419384,0.0015684154,0.019975118,0.033888124,0.0020763364,0.000086752254,0.000060472088,0.000017883149,0.00009709945,0.0008740067,0.9395551,0.00065876334],"about_ca_topic_score_codex":0.00011018846,"about_ca_topic_score_gemma":0.000014524715,"teacher_disagreement_score":0.9931981,"about_ca_system_score_codex":0.000083974155,"about_ca_system_score_gemma":0.00024557748,"threshold_uncertainty_score":0.99998176},"labels":[],"label_agreement":null},{"id":"W2077225298","doi":"10.4161/viru.29307","title":"Interplay between genetic regulation of phosphate homeostasis and bacterial virulence","year":2014,"lang":"en","type":"review","venue":"Virulence","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut National de la Recherche Scientifique; Armand Frappier Museum; Université de Montréal; Cegep de Saint Hyacinthe","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; University of Reading","keywords":"Regulon; Virulence; Biology; Microbiology; Regulation of gene expression; Regulator; Response regulator; Psychological repression; Sigma factor; Cell biology; Gene expression; Gene; Genetics; Mutant; Promoter","score_opus":0.031417276677323525,"score_gpt":0.3724872795521399,"score_spread":0.34107000287481637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077225298","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0029706769,0.99466884,0.0008904945,0.000014804207,0.00018062825,0.00094987,0.00021155732,0.000036990867,0.000076135584],"genre_scores_gemma":[0.0028185623,0.9917773,0.004706106,0.0000079242045,0.0003413178,0.00006113983,0.00012537336,0.00005575493,0.00010649346],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99734455,0.00019669582,0.0009065574,0.0006190439,0.0005544323,0.0003786889],"domain_scores_gemma":[0.9977897,0.00062794756,0.0005426894,0.00066120474,0.00013493595,0.00024351595],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00039681856,0.00039747977,0.002037629,0.00029056444,0.000052791973,0.000038046754,0.00030359556,0.0002445816,0.00023561952],"category_scores_gemma":[0.00068710814,0.00031710957,0.00022660375,0.00037306678,0.00040147206,0.00012605109,0.0002281099,0.00033547508,0.0000938627],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000670393,0.000018461942,0.00008607619,0.022994382,0.000083798244,0.0000052285186,0.000023352855,1.9655634e-7,0.00030791073,0.000014116811,0.00008968909,0.9763098],"study_design_scores_gemma":[0.0004956375,0.0006379357,0.005003892,0.044777464,0.0009210271,0.0000684019,0.000004499707,0.000031136307,0.00067412236,0.00010123269,0.9469014,0.00038325728],"about_ca_topic_score_codex":0.000040979598,"about_ca_topic_score_gemma":0.0000030665624,"teacher_disagreement_score":0.9759265,"about_ca_system_score_codex":0.00010066917,"about_ca_system_score_gemma":0.00023801952,"threshold_uncertainty_score":0.9999281},"labels":[],"label_agreement":null},{"id":"W2077591357","doi":"10.4161/viru.1.4.11980","title":"Subcellular localization of the alphaherpesvirus serine/threonine kinase Us3 as a determinant of Us3 function","year":2010,"lang":"en","type":"article","venue":"Virulence","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Subcellular localization; Cell biology; Biology; Actin; Serine; Cytoskeleton; Kinase; Phosphorylation; Threonine; Actin cytoskeleton; Biochemistry; Cell; Cytoplasm","score_opus":0.006776819714580469,"score_gpt":0.25042727028977524,"score_spread":0.24365045057519477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077591357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952945,0.00013240534,0.0024515844,0.000059380593,0.00050536764,0.00035257937,0.000012490373,0.000028977684,0.0011627328],"genre_scores_gemma":[0.99900806,0.0000680737,0.00023108908,0.00009716963,0.00005613852,0.000022715882,0.000007047464,0.000018631707,0.00049106224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902976,0.000036849895,0.00031747264,0.0002044002,0.00025302378,0.000158499],"domain_scores_gemma":[0.99901915,0.000030548294,0.00018221549,0.0005336087,0.00016023358,0.000074244475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015065652,0.00013991026,0.00022505184,0.00007976082,0.00009127924,0.0000062279305,0.00009353453,0.00011344955,0.0004726129],"category_scores_gemma":[0.00011245589,0.000094180636,0.0001170127,0.00037723323,0.00014446693,0.00009230072,0.000046713532,0.00017590728,0.00006647641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054769195,0.0015416563,0.1942759,0.00035351812,0.00019543363,0.000059625127,0.00030698194,0.00020708719,0.60217655,0.0018388503,0.00015480624,0.1983419],"study_design_scores_gemma":[0.0018140796,0.00077457866,0.06933522,0.0002778333,0.00036802425,0.00010549375,0.000036394795,0.0031543314,0.87016606,0.00044408566,0.05334588,0.00017798421],"about_ca_topic_score_codex":0.0009991677,"about_ca_topic_score_gemma":0.00028283996,"teacher_disagreement_score":0.26798955,"about_ca_system_score_codex":0.000028460809,"about_ca_system_score_gemma":0.000105618084,"threshold_uncertainty_score":0.517478},"labels":[],"label_agreement":null},{"id":"W2079273618","doi":"10.4161/viru.2.1.14610","title":"Viral disruption of promyelocytic leukemia (PML) nuclear bodies by hijacking host PML regulators","year":2011,"lang":"en","type":"article","venue":"Virulence","topic":"Retinoids in leukemia and cellular processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Promyelocytic leukemia protein; Biology; Death-associated protein 6; Nuclear protein; Cell biology; Virology; Transcription factor; Genetics; Gene","score_opus":0.010455164943236993,"score_gpt":0.2178981818349667,"score_spread":0.2074430168917297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079273618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943962,0.0012645859,0.00055789057,0.00001053811,0.00011885775,0.00012598962,0.000014438816,0.000025924634,0.0034855758],"genre_scores_gemma":[0.99780124,0.0005424025,0.0008586732,0.00006387483,0.000083435625,0.000012048504,0.000028351682,0.00003085939,0.0005791022],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988991,0.000042301697,0.000264662,0.00036964577,0.00017086354,0.0002534339],"domain_scores_gemma":[0.9993043,0.0000060814555,0.00016718546,0.00037678253,0.00008121765,0.00006444499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013988148,0.00017979756,0.00016608425,0.00003389954,0.00009043361,0.000016286614,0.00031562778,0.0001773717,0.000053881773],"category_scores_gemma":[0.00007460817,0.00016834417,0.000083192936,0.00006971836,0.00026058315,0.000015309846,0.00013180776,0.000103477396,0.00002179769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008321238,0.000035273257,0.002607342,0.00010745369,0.000027633498,0.000002966683,0.00037055823,0.0000034291425,0.99388784,0.00029340317,0.0007538827,0.0018269804],"study_design_scores_gemma":[0.00026582959,0.00029937763,0.0017641084,0.00006819284,0.000026511583,0.000012149151,0.0001799927,0.00009001658,0.990731,0.00023150012,0.006085394,0.00024591477],"about_ca_topic_score_codex":0.00006337228,"about_ca_topic_score_gemma":0.000003119209,"teacher_disagreement_score":0.005331511,"about_ca_system_score_codex":0.000049230486,"about_ca_system_score_gemma":0.00009857813,"threshold_uncertainty_score":0.6864876},"labels":[],"label_agreement":null},{"id":"W2081954492","doi":"10.4161/viru.22539","title":"The fate of not sensing phosphate","year":2012,"lang":"en","type":"letter","venue":"Virulence","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Montréal; Armand Frappier Museum; Institut National de la Recherche Scientifique; Cegep de Saint Hyacinthe","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Fimbria; Escherichia coli; Biology; Operon; Virulence; Microbiology; Bacteria; Enterobacteriaceae; Phosphate; Gene; Genetics; Biochemistry","score_opus":0.012535453954505636,"score_gpt":0.2335413894933209,"score_spread":0.22100593553881526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081954492","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2848663,0.18626836,0.0078022205,0.4829147,0.017327959,0.0020385357,0.0008473209,0.00013752804,0.01779707],"genre_scores_gemma":[0.2384115,0.020539232,0.0019698876,0.686598,0.017420847,0.000022658862,0.00047192487,0.00021596768,0.034349952],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988822,0.000059971822,0.00022644171,0.00025986036,0.00018757577,0.00038400156],"domain_scores_gemma":[0.9990426,0.000026212221,0.00021360787,0.0006045812,0.00007735182,0.00003570303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019201533,0.00020573619,0.00019254406,0.000017521495,0.00009464827,0.000018477169,0.00032638814,0.00042402698,0.00001014579],"category_scores_gemma":[0.000049588856,0.00014307303,0.00013693662,0.000044709053,0.00018436533,0.0000023098526,0.0001612484,0.00036769293,0.000031730524],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026439846,0.0000061713718,0.000025161838,0.000058960824,0.00007663775,0.0000107146125,0.000035033518,0.0000032893472,0.25835887,0.00004712074,0.7182731,0.023078497],"study_design_scores_gemma":[0.0000617546,0.000016852247,0.00008623677,0.000017781691,0.000029124674,0.0000087671415,0.000004459077,0.000005148395,0.2866411,0.000013551219,0.71298385,0.00013136168],"about_ca_topic_score_codex":0.00003588312,"about_ca_topic_score_gemma":0.0000030546764,"teacher_disagreement_score":0.20368333,"about_ca_system_score_codex":0.000005019171,"about_ca_system_score_gemma":0.000046882295,"threshold_uncertainty_score":0.5834349},"labels":[],"label_agreement":null},{"id":"W2083516818","doi":"10.4161/viru.22364","title":"Molecular blueprint of uropathogenic<i><i>Escherichia coli</i></i>virulence provides clues toward the development of anti-virulence therapeutics","year":2012,"lang":"en","type":"letter","venue":"Virulence","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Université Paris-Est Créteil Val-de-Marne; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Virulence; Biology; Blueprint; Microbiology; Escherichia coli; Escherichia coli Proteins; Virulence factor; Virology; Genetics; Gene","score_opus":0.032617605813737224,"score_gpt":0.2845491872610258,"score_spread":0.25193158144728856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083516818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95862097,0.01854234,0.0034524673,0.016710585,0.00041610972,0.001522253,0.00019052044,0.000046215926,0.0004985376],"genre_scores_gemma":[0.9352954,0.0065264413,0.010245601,0.04626343,0.00076896435,0.00040820986,0.00010501885,0.00017582574,0.00021108735],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99494743,0.00060535443,0.001142392,0.0009990927,0.001235283,0.0010704203],"domain_scores_gemma":[0.99648756,0.00017270858,0.000907896,0.0016504222,0.0006656482,0.00011578943],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001169762,0.0007869602,0.00085238455,0.000117902564,0.00020940174,0.00004821103,0.002271507,0.00075217895,0.000019305298],"category_scores_gemma":[0.00034003708,0.00060503243,0.0003518752,0.00043372298,0.0012756104,0.000020493164,0.0015047423,0.0012841983,0.000024022529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007665622,0.00015576543,0.0017430807,0.00096452085,0.0005330402,0.000016418979,0.0010847225,0.000030030695,0.9885823,0.000028956432,0.0038304303,0.0029540933],"study_design_scores_gemma":[0.00026717497,0.00023392233,0.0037801296,0.00031388277,0.0001713822,0.0000067513756,0.00019946395,0.000040623912,0.7896295,0.000053455555,0.20458046,0.0007232615],"about_ca_topic_score_codex":0.000048783113,"about_ca_topic_score_gemma":0.000014735524,"teacher_disagreement_score":0.20075002,"about_ca_system_score_codex":0.000061851766,"about_ca_system_score_gemma":0.001012687,"threshold_uncertainty_score":0.9996401},"labels":[],"label_agreement":null},{"id":"W2086295184","doi":"10.4161/viru.20244","title":"A novel method for infecting Drosophila adult flies with insect pathogenic nematodes","year":2012,"lang":"en","type":"article","venue":"Virulence","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Columbian College of Arts and Sciences, George Washington University; Directorate for Biological Sciences; George Washington University","keywords":"Biology; Photorhabdus; Photorhabdus luminescens; Axenic; Symbiotic bacteria; Heterorhabditis; Heterorhabditis bacteriophora; Drosophila (subgenus); Insect; Host (biology); Innate immune system; Microbiology; Symbiosis; Immune system; Xenorhabdus; Wolbachia; Bacteria; Nematode; Genetics; Gene; Ecology","score_opus":0.034669806548413,"score_gpt":0.25891589981855045,"score_spread":0.22424609327013745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086295184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983169,0.00009522618,0.0004051521,0.0002322535,0.00017985409,0.00027557992,0.00006596047,0.000078113815,0.00035099144],"genre_scores_gemma":[0.98891884,0.000021533304,0.009748889,0.0005979752,0.0005773999,0.00009546885,0.000014068378,0.0000018302738,0.00002400547],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989261,0.000049131395,0.00020122225,0.00024392243,0.00014543511,0.00043417676],"domain_scores_gemma":[0.99924743,0.00034996794,0.0001310519,0.000058533362,0.000119047734,0.000093939445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040775616,0.00017352815,0.00020189963,0.000011906101,0.00033893654,0.00009418874,0.00019060085,0.00008545656,0.0000706725],"category_scores_gemma":[0.000120156685,0.00005887441,0.00009111767,0.00024340893,0.000058038022,0.00038669238,0.00004762714,0.000060470033,0.000016680924],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004511767,0.000082762854,0.0133133065,0.000016223457,0.000010943287,2.3633883e-7,0.00018893564,0.000001382969,0.97333664,0.0020300266,0.000015545322,0.010958891],"study_design_scores_gemma":[0.0006503847,0.0015363712,0.54352224,0.00029783958,0.00008532607,0.0001662125,0.0006963027,0.00023722604,0.4442402,0.0011834999,0.0062895888,0.0010947742],"about_ca_topic_score_codex":0.00045773073,"about_ca_topic_score_gemma":0.00029994268,"teacher_disagreement_score":0.53020895,"about_ca_system_score_codex":0.000013864921,"about_ca_system_score_gemma":0.000008167989,"threshold_uncertainty_score":0.260686},"labels":[],"label_agreement":null},{"id":"W2092773131","doi":"10.4161/21505594.2014.983020","title":"Replication of influenza A virus in swine umbilical cord epithelial stem-like cells","year":2014,"lang":"en","type":"article","venue":"Virulence","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Biology; Stem cell; Virus; Virology; Immunology; Cell biology","score_opus":0.04191132152453162,"score_gpt":0.3460680903457725,"score_spread":0.3041567688212409,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092773131","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763185,0.00008093187,0.0010409879,0.00050582085,0.0000732465,0.00026907082,0.0000205401,0.000024316514,0.00035324166],"genre_scores_gemma":[0.99700546,0.0001665918,0.0009302109,0.0015922132,0.00008920109,0.00003352353,0.0000069037633,0.00001086539,0.00016502322],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984321,0.00020014969,0.00046633766,0.00037140443,0.00020341271,0.0003265676],"domain_scores_gemma":[0.9989502,0.00007314177,0.000100659694,0.00064345746,0.00007676879,0.00015581708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009005657,0.00009833628,0.0003623917,0.000112336806,0.00001814924,0.0000039516603,0.00016060974,0.00008665585,0.00006871801],"category_scores_gemma":[0.0007083771,0.00008574348,0.00006340622,0.00017561135,0.00016991171,0.00006221273,0.0000728012,0.00022555557,0.000106658605],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014408173,0.00018891203,0.0583402,0.00010567359,0.000009148473,0.000011115796,0.00004106596,0.000016278102,0.8925991,0.00014527884,0.00089374976,0.046208672],"study_design_scores_gemma":[0.005708379,0.0074237683,0.68995273,0.0006621666,0.000032584834,0.00010996845,0.00006023415,0.007846133,0.23257728,0.0008346465,0.054490294,0.00030184214],"about_ca_topic_score_codex":0.00048191933,"about_ca_topic_score_gemma":0.00008515163,"teacher_disagreement_score":0.6600218,"about_ca_system_score_codex":0.00004440349,"about_ca_system_score_gemma":0.000040061837,"threshold_uncertainty_score":0.34965175},"labels":[],"label_agreement":null},{"id":"W2102100529","doi":"10.4161/viru.2.2.15039","title":"Elongation factor P mediates a novel post-transcriptional regulatory pathway critical for bacterial virulence","year":2011,"lang":"en","type":"review","venue":"Virulence","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Biology; Virulence; Virulence factor; Translation (biology); Gene; Genetics; Mutant; Cell biology; Elongation factor; Transcription factor; Regulation of gene expression; Phenotype; Microbiology; Messenger RNA; Ribosome; RNA","score_opus":0.05316115995287028,"score_gpt":0.30300807271072405,"score_spread":0.24984691275785376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102100529","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008017163,0.978518,0.014735028,0.000022775837,0.001487521,0.0011893556,0.0031401254,0.00003804517,0.00006741706],"genre_scores_gemma":[0.0009322827,0.9890041,0.006210486,0.00010774165,0.0013915944,0.000840658,0.0011676259,0.00010861227,0.00023692855],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99772936,0.0001436631,0.0006000402,0.00085099606,0.00023631581,0.00043960373],"domain_scores_gemma":[0.99862224,0.00015175484,0.0002528087,0.00056307757,0.00023912218,0.00017101741],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034008667,0.0005158804,0.0007332684,0.000090065405,0.00015399446,0.000056466786,0.00058081374,0.00081318256,0.00025479088],"category_scores_gemma":[0.000664522,0.000453207,0.00055786024,0.00007404094,0.00017755135,0.000018648147,0.00008789479,0.0001686445,0.00006650533],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009761099,0.000104488485,5.452025e-7,0.0033397737,0.00008452302,0.0000014063455,0.000032371947,5.521521e-8,0.6018111,0.0039498545,0.0000638424,0.39051443],"study_design_scores_gemma":[0.00021384376,0.00038401995,0.000018479584,0.0019290583,0.00016594761,0.0000295827,0.0000059316694,0.0000014113381,0.05645059,0.00029134843,0.93986124,0.0006485255],"about_ca_topic_score_codex":0.000009209974,"about_ca_topic_score_gemma":0.0000070266724,"teacher_disagreement_score":0.9397974,"about_ca_system_score_codex":0.000033460925,"about_ca_system_score_gemma":0.00050726987,"threshold_uncertainty_score":0.999792},"labels":[],"label_agreement":null},{"id":"W2102837962","doi":"10.4161/viru.2.2.15014","title":"The intrinsic resistome of<i>Pseudomonas aeruginosa</i>to β-lactams","year":2011,"lang":"eo","type":"review","venue":"Virulence","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Resistome; Biology; Pseudomonas aeruginosa; Efflux; Antibiotics; Genetics; Antibiotic resistance; Microbiology; Transposable element; Imipenem; Mobile genetic elements; Drug resistance; Mutant; Plasmid; Bacteria; Gene; Integron","score_opus":0.02254421761239971,"score_gpt":0.28298369369703513,"score_spread":0.2604394760846354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102837962","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013765258,0.9772213,0.00025774213,0.000094555704,0.0016818465,0.0013485517,0.00022117828,0.0000219879,0.0053875917],"genre_scores_gemma":[0.032577142,0.96197003,0.00085953134,0.0001470083,0.0005605484,0.00005391229,0.000075660006,0.000113047216,0.0036430943],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957366,0.000450909,0.0013640407,0.001191201,0.000396045,0.00086122524],"domain_scores_gemma":[0.99557745,0.00019475429,0.0010469941,0.0025713544,0.00031785865,0.00029158167],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00087652536,0.00081831263,0.0013304171,0.00011932479,0.0003039541,0.00009222257,0.0023571544,0.0007513291,0.00007660647],"category_scores_gemma":[0.0006800311,0.0005908787,0.00067354494,0.00051845657,0.0008323743,0.000008930458,0.00085956947,0.00047208066,0.0006508964],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071430026,0.00029434328,0.0007923982,0.008616178,0.0008544783,0.000046121168,0.00016835768,9.651255e-7,0.031802397,0.00319985,0.017270336,0.93624026],"study_design_scores_gemma":[0.0001694431,0.00034365364,0.00095252687,0.0036098822,0.0002800581,0.00003241778,0.00003064697,2.737533e-7,0.006765794,0.000064739455,0.98706305,0.00068749086],"about_ca_topic_score_codex":0.00007291393,"about_ca_topic_score_gemma":0.0000708945,"teacher_disagreement_score":0.9697927,"about_ca_system_score_codex":0.00008405926,"about_ca_system_score_gemma":0.00066678145,"threshold_uncertainty_score":0.99965423},"labels":[],"label_agreement":null},{"id":"W2115741699","doi":"10.4161/viru.22466","title":"Diagnosis of influenza from lower respiratory tract sampling after negative upper respiratory tract sampling","year":2013,"lang":"en","type":"article","venue":"Virulence","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital","funders":"","keywords":"Respiratory tract; Sampling (signal processing); Respiratory system; Respiratory tract infections; Medical diagnosis; Respiratory illness; Medicine; Lower respiratory tract infection; Internal medicine; Biology; Pathology","score_opus":0.1372176625756286,"score_gpt":0.3909954810449222,"score_spread":0.2537778184692936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115741699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902881,0.007087748,0.000116042465,0.00021436393,0.0002097683,0.0011065735,0.0001736303,0.000111159345,0.0006926479],"genre_scores_gemma":[0.9878268,0.00028821905,0.0030512812,0.0073995837,0.00043879406,0.00087028876,0.0000033855208,0.00008500125,0.000036610723],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9960863,0.00020671962,0.0010094688,0.00079544325,0.0010632853,0.00083876244],"domain_scores_gemma":[0.99576336,0.0018626911,0.0003241554,0.0009668116,0.00071541674,0.00036753388],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00066148536,0.00047322386,0.0008198892,0.00039470635,0.00020567674,0.00007524561,0.00037081895,0.00028114938,0.0024427366],"category_scores_gemma":[0.0031863458,0.0004035926,0.00030559022,0.00050507404,0.0005882732,0.00081377936,0.0002497445,0.00088690285,0.0008715352],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006982603,0.00076498475,0.9109121,0.00022626348,0.00024007299,0.00005304702,0.001704737,0.000052334337,0.07140112,0.000038039096,0.00082989945,0.013079173],"study_design_scores_gemma":[0.0016448663,0.00049679127,0.9475959,0.000990153,0.000101652666,0.0000015476463,0.00039903368,0.000020528832,0.025495991,0.00063820416,0.022199819,0.00041551606],"about_ca_topic_score_codex":0.0011327617,"about_ca_topic_score_gemma":0.00002329585,"teacher_disagreement_score":0.045905128,"about_ca_system_score_codex":0.0002497973,"about_ca_system_score_gemma":0.0002873505,"threshold_uncertainty_score":0.9999064},"labels":[],"label_agreement":null},{"id":"W2139122604","doi":"10.1080/21505594.2015.1048958","title":"Virulence factors as predictive tools for drug resistance in Pseudomonas aeruginosa","year":2015,"lang":"en","type":"letter","venue":"Virulence","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Pseudomonas aeruginosa; Pathogen; Virulence; Pneumonia; Microbiology; Biology; Drug resistance; Opportunistic pathogen; Human pathogen; Antibiotic resistance; Virulence factor; Antibiotics; Virology; Medicine; Bacteria; Internal medicine; Gene","score_opus":0.02076858831195402,"score_gpt":0.26891348578928975,"score_spread":0.24814489747733573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139122604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8994397,0.0071865097,0.0043931766,0.06621686,0.003634057,0.0047769477,0.0038883246,0.00018312712,0.010281304],"genre_scores_gemma":[0.61036795,0.0038623482,0.015031282,0.26390815,0.01208694,0.0010430772,0.010551347,0.0008864304,0.082262486],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961887,0.00019834196,0.0006703794,0.0014799784,0.0005699731,0.0008926174],"domain_scores_gemma":[0.99760044,0.00023718635,0.00046190733,0.0012375861,0.00032896808,0.00013393142],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004459754,0.00071038806,0.0006604474,0.000142877,0.000106600855,0.00016213002,0.0012235133,0.0011867434,0.000031337706],"category_scores_gemma":[0.0012103718,0.0006990041,0.00024427575,0.00021000927,0.00039871698,0.000039381077,0.00024785986,0.00087591476,0.00005579714],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058555417,0.000051048813,0.001816673,0.00033140046,0.00007951453,0.000110226974,0.00018301266,0.0000063921707,0.020429604,0.00006156012,0.9761787,0.00016632919],"study_design_scores_gemma":[0.0007101784,0.00023666749,0.0015031685,0.00056848564,0.000052911066,0.000008471658,0.0001298253,0.000007522784,0.029711189,0.0013776805,0.9646611,0.0010327979],"about_ca_topic_score_codex":0.000072631105,"about_ca_topic_score_gemma":0.00020125245,"teacher_disagreement_score":0.28907174,"about_ca_system_score_codex":0.00019261811,"about_ca_system_score_gemma":0.00060661515,"threshold_uncertainty_score":0.9995461},"labels":[],"label_agreement":null},{"id":"W2141554083","doi":"10.4161/viru.1.3.11053","title":"Mitochondria and the regulation of hypervirulence in the fatal fungal outbreak on Vancouver Island","year":2010,"lang":"en","type":"article","venue":"Virulence","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Birmingham; Wellcome Trust","keywords":"Virulence; Biology; Mitochondrion; Organelle; Pathogen; Cryptococcus neoformans; Microbiology; Fungus; Outbreak; Gene; Fungal pathogen; Cryptococcus gattii; Cell biology; Genetics; Virology; Botany","score_opus":0.009973153699213642,"score_gpt":0.24558793703863563,"score_spread":0.23561478333942198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141554083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98996097,0.00015857449,0.000033682943,0.00094664335,0.00037268086,0.0002782167,0.000008866073,0.0000084076855,0.008231939],"genre_scores_gemma":[0.99895924,0.00009561547,0.00011299373,0.00039888002,0.0001001282,0.000023010982,7.3518737e-7,0.0000041726976,0.00030520983],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99940735,0.000048882648,0.00014687188,0.00013061074,0.00017067607,0.000095592375],"domain_scores_gemma":[0.9993534,0.00028026398,0.000049169623,0.00025662893,0.000043986747,0.000016521655],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031090144,0.00007782874,0.00014080289,0.000042992095,0.00009684071,0.000010455591,0.00007381614,0.000042881482,0.000029163224],"category_scores_gemma":[0.00019001489,0.000036981062,0.000035416626,0.00014413582,0.00029402247,0.000056751058,0.00002832132,0.00025378983,0.000007537369],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0049397307,0.0013004007,0.38642105,0.00047519553,0.00021640898,0.0000511173,0.023073317,0.00015911572,0.43317357,0.0667698,0.046543304,0.036877],"study_design_scores_gemma":[0.0032150797,0.0003751836,0.97953266,0.00016719151,0.00007274773,0.00007651764,0.00095459423,0.0016634216,0.005894682,0.0018460121,0.0060592643,0.00014262238],"about_ca_topic_score_codex":0.00025027344,"about_ca_topic_score_gemma":0.0020705864,"teacher_disagreement_score":0.59311163,"about_ca_system_score_codex":0.000005735828,"about_ca_system_score_gemma":0.000014473703,"threshold_uncertainty_score":0.1508044},"labels":[],"label_agreement":null},{"id":"W2166396446","doi":"10.1080/21505594.2015.1104449","title":"Transcriptome analysis of<i>Campylobacter jejuni</i>polyphosphate kinase (<i>ppk1</i>and<i>ppk2</i>) mutants","year":2015,"lang":"yi","type":"letter","venue":"Virulence","topic":"Trace Elements in Health","field":"Nursing","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Campylobacter jejuni; Transcriptome; Biology; Mutant; Microbiology; Genetics; Gene expression; Gene; Bacteria","score_opus":0.030012630275096156,"score_gpt":0.2978032932078127,"score_spread":0.26779066293271653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166396446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8567913,0.030013787,0.0007930406,0.07725441,0.01526953,0.0041021467,0.012775191,0.00062042364,0.0023801345],"genre_scores_gemma":[0.8070286,0.006010378,0.004102309,0.17370813,0.0030475052,0.00022119729,0.0014102667,0.00076186267,0.0037097621],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.98666555,0.0012960088,0.0033109295,0.0029048226,0.0029527398,0.002869939],"domain_scores_gemma":[0.9919934,0.00084335054,0.0022101589,0.0031489932,0.0007888123,0.0010152819],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.002340951,0.0020083657,0.0038967084,0.0024713872,0.00047934157,0.00030944753,0.0020947463,0.0019773538,0.0014945177],"category_scores_gemma":[0.00033723432,0.002113716,0.0011258706,0.0049494295,0.0012893424,0.00094996375,0.000349588,0.0036827098,0.00038762475],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008088414,0.006295218,0.19304116,0.015868103,0.037394963,0.0043266593,0.045867976,0.0013187481,0.06914336,0.0012852934,0.4491204,0.1682497],"study_design_scores_gemma":[0.005670614,0.0026851322,0.03626684,0.003802863,0.031164695,0.000085233565,0.0005759724,0.0022824185,0.010801193,0.00074152596,0.90092665,0.0049968795],"about_ca_topic_score_codex":0.002765786,"about_ca_topic_score_gemma":0.00048142218,"teacher_disagreement_score":0.45180622,"about_ca_system_score_codex":0.0008834395,"about_ca_system_score_gemma":0.00055411033,"threshold_uncertainty_score":0.99941826},"labels":[],"label_agreement":null},{"id":"W2173229952","doi":"10.1080/21505594.2015.1108516","title":"<i>Brucella</i>discriminates between mouse dendritic cell subsets upon<i>in vitro</i>infection","year":2015,"lang":"en","type":"article","venue":"Virulence","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"","keywords":"Brucella; Biology; Dendritic cell; Brucella melitensis; Secretion; Immune system; Interleukin 10; Intracellular parasite; Microbiology; Immunology; Cell biology; Brucellosis; Virology","score_opus":0.11239923413882848,"score_gpt":0.3423083448763487,"score_spread":0.22990911073752024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2173229952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99291015,0.0015587608,0.00014672978,0.0005101786,0.00056711474,0.0005469789,0.00009801248,0.00029497404,0.0033670957],"genre_scores_gemma":[0.9964676,0.0004640061,0.0016854936,0.00038393526,0.00022806716,0.00021461911,0.000094490046,0.00007991524,0.0003818662],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964328,0.00069865485,0.0007377825,0.00089572987,0.00033532636,0.00089973403],"domain_scores_gemma":[0.99770504,0.0007851645,0.0002347804,0.00077217823,0.00010441119,0.00039841916],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010129267,0.00048069799,0.00066352595,0.00026220424,0.00011701155,0.000052435684,0.00040300813,0.00033382577,0.00008769336],"category_scores_gemma":[0.00037590845,0.00047659024,0.00017358782,0.00034899468,0.00015325811,0.00032709813,0.00021056249,0.0004473506,0.0028004677],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010337343,0.002212228,0.690264,0.00044895735,0.00014437422,0.0014145744,0.0021317976,0.00045494825,0.27324292,0.0002649353,0.01949037,0.008897145],"study_design_scores_gemma":[0.004827108,0.0020447015,0.16469158,0.00024531162,0.00032745083,0.00023460323,0.0004768748,0.0010106373,0.80959135,0.0036445376,0.011058456,0.0018473676],"about_ca_topic_score_codex":0.0042072088,"about_ca_topic_score_gemma":0.00024910134,"teacher_disagreement_score":0.53634846,"about_ca_system_score_codex":0.0005046314,"about_ca_system_score_gemma":0.000092477436,"threshold_uncertainty_score":0.99976856},"labels":[],"label_agreement":null},{"id":"W2195892293","doi":"10.1080/21505594.2015.1096470","title":"Estimating dengue type reproduction numbers for two provinces of Sri Lanka during the period 2013–14","year":2015,"lang":"en","type":"article","venue":"Virulence","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Dengue fever; Sri lanka; Transmission (telecommunications); Incidence (geometry); Biology; Reproduction; Seasonality; Veterinary medicine; Demography; Basic reproduction number; Geography; Ecology; Virology; Population; Mathematics; Medicine","score_opus":0.02046209796998674,"score_gpt":0.3051834413474056,"score_spread":0.2847213433774189,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2195892293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960525,0.0013476731,0.00030129254,0.00096518785,0.0004126881,0.0005259825,0.000010208652,0.000038299924,0.00034617592],"genre_scores_gemma":[0.9970689,0.000011593815,0.0018545421,0.00006577018,0.00053087226,0.00005141084,0.000005090696,0.000009452671,0.0004023957],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9992465,0.00002357659,0.00017272035,0.00022807198,0.00018150092,0.00014766847],"domain_scores_gemma":[0.9992259,0.00002857577,0.00011057822,0.0003481911,0.00021512662,0.000071598195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028956227,0.000079711026,0.00014595542,0.000021164054,0.00007594004,0.000015535008,0.00009651049,0.000023604518,0.000022604663],"category_scores_gemma":[0.00065292366,0.00005377738,0.000053002506,0.00009711011,0.00005680613,0.00008348024,0.000025981626,0.00006575651,0.000014675244],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013742008,0.0018506484,0.37413868,0.0072734533,0.0010626689,0.00015390031,0.054723345,0.024954729,0.27803063,0.0026589604,0.026284685,0.21512629],"study_design_scores_gemma":[0.046939842,0.006756281,0.20788689,0.005208491,0.0041987333,0.0012180423,0.05862919,0.43450508,0.14557983,0.004193162,0.0815737,0.0033107484],"about_ca_topic_score_codex":0.0003406649,"about_ca_topic_score_gemma":0.000042564767,"teacher_disagreement_score":0.40955037,"about_ca_system_score_codex":0.000032836426,"about_ca_system_score_gemma":0.00012715315,"threshold_uncertainty_score":0.2192978},"labels":[],"label_agreement":null},{"id":"W22722238","doi":"10.4161/viru.20979","title":"Technology Commercialization in Europe after the Failure of the Community Patent","year":2005,"lang":"en","type":"article","venue":"Virulence","topic":"Innovation Policy and R&D","field":"Economics, Econometrics and Finance","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Commercialization; Business; Patent troll; Patent infringement; Member state; Member states; State (computer science); Patent office; Intellectual property; Law and economics; International trade; Patent law; Political science; European union; Law; Economics; Marketing; Computer science","score_opus":0.05115639931808912,"score_gpt":0.22484940424923713,"score_spread":0.173693004931148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W22722238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9770685,0.0002303157,0.00038716968,0.017467828,0.00009133666,0.00011516298,0.000033362077,0.00001072533,0.004595641],"genre_scores_gemma":[0.9977394,0.000049416543,0.00007744581,0.0019279021,0.000022583508,0.000013545521,0.0000012512943,0.0000047397643,0.00016372638],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","domain_scores_codex":[0.9994953,0.00004033696,0.00028921224,0.0000644917,0.000017604743,0.00009302851],"domain_scores_gemma":[0.99943995,0.000021465794,0.0001548393,0.0003405483,0.000038036604,0.0000051379716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038178766,0.000047165107,0.00008748096,0.00010475514,0.00010109408,0.000008881495,0.0003261734,0.000053018124,0.00006828553],"category_scores_gemma":[0.00012251365,0.000032514476,0.000017940889,0.00090999075,0.00012635617,0.00007243566,0.00009892322,0.00022277217,0.00008907757],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010679007,0.00010383004,0.29225555,0.000013583641,0.000005759158,1.8087408e-7,0.0016252961,0.00025134927,0.00014308514,0.702255,0.00087699015,0.0024586783],"study_design_scores_gemma":[0.00034917454,0.000030280164,0.71736306,0.000046313664,0.0000022889058,0.0000029254682,0.0002055174,0.0011173745,0.0027093948,0.035174936,0.24284285,0.00015587486],"about_ca_topic_score_codex":0.00026732674,"about_ca_topic_score_gemma":0.00043172052,"teacher_disagreement_score":0.6670801,"about_ca_system_score_codex":0.000021286558,"about_ca_system_score_gemma":0.000008315788,"threshold_uncertainty_score":0.13259017},"labels":[],"label_agreement":null},{"id":"W2278287528","doi":"10.1080/21505594.2015.1117920","title":"Virulence profile: Nathalie Pujol","year":2015,"lang":"en","type":"article","venue":"Virulence","topic":"Historical Studies and Socio-cultural Analysis","field":"Arts and Humanities","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"","keywords":"Biology; Cochlea; Virulence; Stereocilia (inner ear); Inner ear; Beauty; Anatomy; Hair cell; Genetics; Aesthetics","score_opus":0.06043738317925713,"score_gpt":0.23505202137684222,"score_spread":0.1746146381975851,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2278287528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.77931464,0.0051323585,0.00017257009,0.04279009,0.002750804,0.0004882547,0.00009719452,0.00057303515,0.16868107],"genre_scores_gemma":[0.9353562,0.00037057552,0.00016714011,0.00089243654,0.0009003686,0.00005339127,0.0000079854335,0.000014907202,0.06223702],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99882513,0.000039608214,0.00021237279,0.00026840167,0.0003693434,0.00028514623],"domain_scores_gemma":[0.99929774,0.00003233786,0.00007884488,0.00018635261,0.00023823547,0.00016651946],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016238008,0.00015734477,0.00021832879,0.00003245188,0.0012354082,0.000110088804,0.00027676355,0.000040706727,0.0011729507],"category_scores_gemma":[0.0001033695,0.00010926228,0.00010966227,0.00008863244,0.0002827654,0.00026728248,0.00008927601,0.00013838931,0.0017625095],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053203396,0.000320929,0.0012395662,0.000070978924,0.0001894692,0.000069294816,0.28765652,0.000019935867,0.0003115523,0.32914817,0.35962263,0.021297766],"study_design_scores_gemma":[0.00018680145,0.00009938569,0.000056291963,0.000020721014,0.000043281125,0.0000015192625,0.00527059,0.00011075718,0.00007470054,0.0052996296,0.9885369,0.00029945583],"about_ca_topic_score_codex":0.0010670148,"about_ca_topic_score_gemma":0.0009384215,"teacher_disagreement_score":0.62891424,"about_ca_system_score_codex":0.00046981138,"about_ca_system_score_gemma":0.00002636744,"threshold_uncertainty_score":0.9997401},"labels":[],"label_agreement":null},{"id":"W2306952298","doi":"10.1080/21505594.2016.1162371","title":"Anti-apoptosis in porcine respiratory and reproductive syndrome virus","year":2016,"lang":"en","type":"letter","venue":"Virulence","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Porcine reproductive and respiratory syndrome virus; Virology; Apoptosis; Respiratory system; Virus; Immunology; Genetics; Anatomy","score_opus":0.032392067943106145,"score_gpt":0.23606210609801842,"score_spread":0.20367003815491228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2306952298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8251165,0.0014305196,5.75314e-7,0.17140459,0.00028358825,0.00031673285,0.00020232478,0.00009869665,0.0011464427],"genre_scores_gemma":[0.6655704,0.003083346,0.000050392187,0.32255736,0.0058634104,0.00021892645,0.00003546176,0.000010667574,0.0026100513],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979332,0.0001381691,0.0003139354,0.00092961185,0.00024413691,0.00044096468],"domain_scores_gemma":[0.99931574,0.00024610237,0.00017283509,0.00015375589,0.00007263552,0.000038944996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030277122,0.00031277613,0.0004581297,0.000057503774,0.00021632666,0.000038540078,0.00026408603,0.0004005183,0.00023867142],"category_scores_gemma":[0.00017273118,0.00011372333,0.000073778036,0.0003870935,0.00031002177,0.00017758177,0.00025255795,0.00066444697,0.0001930077],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038647082,0.000081565726,0.046485774,0.00009219039,0.000095921234,0.0004777783,0.00011467494,3.631285e-7,0.30162668,0.000066850494,0.6169255,0.033994067],"study_design_scores_gemma":[0.00008680874,0.00035898763,0.1894666,0.00022077071,0.00002052116,0.00003976035,0.000027653212,2.2613945e-7,0.0029110787,0.00037114008,0.8060377,0.0004587495],"about_ca_topic_score_codex":0.0007462171,"about_ca_topic_score_gemma":0.00020810684,"teacher_disagreement_score":0.2987156,"about_ca_system_score_codex":0.00007537601,"about_ca_system_score_gemma":0.000009731537,"threshold_uncertainty_score":0.46375027},"labels":[],"label_agreement":null},{"id":"W2314741971","doi":"10.4161/viru.1.1.10320","title":"Coupling temperature sensing and development","year":2010,"lang":"en","type":"review","venue":"Virulence","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Amgen (Canada); University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Hsp90; Transcription factor; Morphogenesis; Cell biology; Candida albicans; Transcription (linguistics); Signal transduction; Fungal protein; Genetics; Saccharomyces cerevisiae; Yeast; Heat shock protein; Gene","score_opus":0.036291577710054077,"score_gpt":0.34293607217294686,"score_spread":0.30664449446289277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2314741971","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017482662,0.9975068,0.00012364535,0.0000057076795,0.000088508204,0.00040360919,0.000010049105,0.000011280564,0.00010213632],"genre_scores_gemma":[0.000084949446,0.9958928,0.0032235188,0.000015551479,0.00023539703,0.000023685212,0.00009364023,0.000043762077,0.00038668347],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99876046,0.000038630882,0.00024276947,0.0005023474,0.00016501518,0.00029079296],"domain_scores_gemma":[0.99935555,0.000018166593,0.00006103781,0.00038108102,0.00006362505,0.000120549565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029476226,0.0002587266,0.00041343147,0.00006396924,0.00014224199,0.00006212144,0.00020146892,0.0006210336,0.000008744487],"category_scores_gemma":[0.00013821863,0.00021387941,0.000061362465,0.00008393219,0.00007815588,0.000001686417,0.00029629152,0.00058103935,0.00004366808],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000017503197,0.0000054334596,0.0000016069976,0.0021203635,0.00002265541,0.000010400963,0.0000077169,2.8803e-7,0.015955621,0.0000014508398,0.000056513338,0.9818162],"study_design_scores_gemma":[0.000042557782,0.000021115637,0.0000012615992,0.0018436821,0.000014225282,0.00007443749,0.000002865386,0.0000064563633,0.007257719,5.9713017e-7,0.9904862,0.0002489011],"about_ca_topic_score_codex":0.0000055414366,"about_ca_topic_score_gemma":0.000016576112,"teacher_disagreement_score":0.99042964,"about_ca_system_score_codex":0.000019806648,"about_ca_system_score_gemma":0.000645155,"threshold_uncertainty_score":0.8721749},"labels":[],"label_agreement":null},{"id":"W2322363778","doi":"10.4161/viru.2.2.15270","title":"Quantitative proteomics identifies ferritin in the innate immune response of<i>C. elegans</i>","year":2011,"lang":"en","type":"article","venue":"Virulence","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Innate immune system; Immune system; Caenorhabditis elegans; Proteomics; Immunity; Effector; Microbiology; Pathogen; Acquired immune system; Pattern recognition receptor; Immunology; Genetics; Gene","score_opus":0.028900993605760962,"score_gpt":0.2598755576761739,"score_spread":0.23097456407041292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2322363778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99497086,0.00078672444,0.0035622413,0.000086594264,0.00009403959,0.0002616108,0.000017195745,0.000005517059,0.00021523725],"genre_scores_gemma":[0.9953893,0.0003154282,0.0038401864,0.0001946394,0.000023747201,0.000030917574,0.000008768531,0.000015107711,0.00018190993],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888587,0.00027596464,0.00026720882,0.00024233745,0.00013415162,0.00019448188],"domain_scores_gemma":[0.9993169,0.000026451411,0.0001100096,0.00044204877,0.00008144728,0.000023167768],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008893665,0.00012510404,0.00012813041,0.00005121235,0.00005355222,0.000017061075,0.00045853847,0.00009126121,0.000010433418],"category_scores_gemma":[0.00023744207,0.00010443206,0.000058158537,0.00011733242,0.00020926437,0.000005577934,0.00010213262,0.000111368216,0.000011832872],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005267472,0.000079350546,0.0015454236,0.000019267989,0.000012980491,0.0000053857266,0.0043023727,0.000021927684,0.9930718,0.00027585647,0.000084391315,0.00005452181],"study_design_scores_gemma":[0.00024347496,0.0004114274,0.056846,0.000025943185,0.000009564632,0.000009032023,0.0009947825,0.00003959723,0.9403591,0.0006437383,0.00027403914,0.00014328228],"about_ca_topic_score_codex":0.00022310647,"about_ca_topic_score_gemma":0.00010123041,"teacher_disagreement_score":0.055300575,"about_ca_system_score_codex":0.0000055387472,"about_ca_system_score_gemma":0.00006039624,"threshold_uncertainty_score":0.4258616},"labels":[],"label_agreement":null},{"id":"W2327770285","doi":"10.4161/viru.25747","title":"Community-acquired pneumonia infections by<i>Acinetobacter baumannii</i>","year":2013,"lang":"en","type":"letter","venue":"Virulence","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Population Health Research Institute","funders":"National Institute of Mental Health","keywords":"Acinetobacter baumannii; Pneumonia; Biology; Acinetobacter; Microbiology; Pathogenic organism; Intensive care medicine; Antibiotics; Pseudomonas aeruginosa; Medicine; Bacteria; Internal medicine","score_opus":0.011701783729213584,"score_gpt":0.2373352181877684,"score_spread":0.22563343445855483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2327770285","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89288795,0.0011627513,0.0009124295,0.09338578,0.0019212944,0.0009571611,0.00082996336,0.00016806704,0.0077745793],"genre_scores_gemma":[0.17241015,0.0017835771,0.00067275815,0.7410827,0.0057227425,0.000191473,0.008731031,0.00038464318,0.06902093],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977771,0.0003967067,0.00042497943,0.00057862676,0.00024137086,0.00058120687],"domain_scores_gemma":[0.99785763,0.00004578205,0.000280611,0.0015758801,0.00015356972,0.00008655467],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00016423647,0.00052153814,0.00039683396,0.00007176405,0.0003197299,0.00015611807,0.0009012133,0.0012144916,0.00025345242],"category_scores_gemma":[0.00009361856,0.0005157352,0.00018738424,0.000121155506,0.00036273937,0.000013925095,0.0003506079,0.0011634789,0.0005649721],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000059873473,0.00004198392,0.0009846438,0.00007231155,0.000057630656,0.0000075098314,0.000013665317,5.0735616e-7,0.27874926,0.0000012730145,0.71991056,0.000154685],"study_design_scores_gemma":[0.00017925362,0.00022814113,0.0021846422,0.00010560762,0.00004122139,0.000032542317,0.000014104411,0.0000030125273,0.014616001,0.00003933765,0.98196465,0.0005914624],"about_ca_topic_score_codex":0.0003185792,"about_ca_topic_score_gemma":0.00003565182,"teacher_disagreement_score":0.7204778,"about_ca_system_score_codex":0.00004721964,"about_ca_system_score_gemma":0.00008313623,"threshold_uncertainty_score":0.9997294},"labels":[],"label_agreement":null},{"id":"W2332031467","doi":"10.4161/viru.25221","title":"Clinical utility of biomarkers of endothelial activation and coagulation for prognosis in HIV infection","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"HIV-related health complications and treatments","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Mental Health; National Institute of Child Health and Human Development; Canadian Institutes of Health Research; Center for AIDS Research, University of Washington; National Institute on Aging; National Institutes of Health; Canada Research Chairs","keywords":"Medicine; Endothelial activation; Endothelial dysfunction; Internal medicine; Biomarker; Prospective cohort study; Coagulation; Immunology; Endothelium; Intensive care medicine; Biology","score_opus":0.13785452181608027,"score_gpt":0.44978124949930065,"score_spread":0.3119267276832204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2332031467","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.067860454,0.91395897,0.0031427157,0.00012957354,0.0002228388,0.013697545,0.00041370347,0.000048783702,0.00052542833],"genre_scores_gemma":[0.04273563,0.9547231,0.0018407746,0.0000040607865,0.000025815752,0.0004715938,0.0001650685,0.000012670748,0.00002125636],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99858457,0.00010462622,0.00088076456,0.00024094112,0.00009511805,0.00009396622],"domain_scores_gemma":[0.9986767,0.00038492694,0.00058339286,0.00017756577,0.00012913531,0.000048237613],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003571721,0.00012280095,0.0007651858,0.00019349929,0.0000247774,0.0000024005687,0.000030497906,0.00025180954,0.000015315234],"category_scores_gemma":[0.0002353172,0.00009787799,0.0001348891,0.0002407087,0.000079274265,0.00006108727,0.000014204545,0.0001229352,0.0000048702605],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004260887,0.00028314127,0.051033292,0.010887098,0.00007412136,8.6354575e-8,0.00001492097,5.6162886e-8,0.0000060482794,0.000047229045,0.000040951036,0.93757045],"study_design_scores_gemma":[0.005401731,0.0022590195,0.63726395,0.0771233,0.0026340042,0.000023144805,0.000017652617,0.0031446922,0.00028209842,0.00043887037,0.2709578,0.00045375476],"about_ca_topic_score_codex":0.00017042657,"about_ca_topic_score_gemma":0.00000520567,"teacher_disagreement_score":0.9371167,"about_ca_system_score_codex":0.000046714977,"about_ca_system_score_gemma":0.00018085506,"threshold_uncertainty_score":0.39913487},"labels":[],"label_agreement":null},{"id":"W2332303054","doi":"10.4161/viru.2.1.14606","title":"Shrink it or lose it: balancing loss of function with shrinking genomes in the microsporidia","year":2011,"lang":"en","type":"review","venue":"Virulence","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microsporidia; Genome; Obligate; Computational biology; Evolutionary biology; Genetics; Genomics; Cell biology; Gene; Microbiology; Ecology","score_opus":0.04210911725714002,"score_gpt":0.30119216840373175,"score_spread":0.25908305114659175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2332303054","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011194126,0.995079,0.00031210762,0.0000116090805,0.000600886,0.0005040536,0.00006149374,0.000020772,0.0022906587],"genre_scores_gemma":[0.007385229,0.9917859,0.00006564065,0.0001442092,0.0000553076,0.00008454004,0.00007066049,0.000023290484,0.0003852233],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99853766,0.0002239032,0.00052593474,0.00033235067,0.000039280014,0.00034084875],"domain_scores_gemma":[0.99844843,0.0006508216,0.00036741074,0.00045837593,0.000062049316,0.000012898506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045042753,0.0003096968,0.00081233017,0.00018650338,0.00013063867,0.00001460069,0.00037378987,0.00036458523,0.0004422293],"category_scores_gemma":[0.00009390142,0.00017359018,0.00013861267,0.00038746526,0.00024949122,0.00007304598,0.00006448906,0.00054427085,0.00042412872],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035179037,0.00075845304,0.0074865404,0.010433875,0.00084725086,0.0002660057,0.002934418,0.000011678774,0.00020158324,0.0059605273,0.0030700369,0.96767783],"study_design_scores_gemma":[0.00029375427,0.0002560473,0.00060343853,0.006641875,0.0004706173,0.00050318794,0.00013539392,1.9215541e-7,0.000049653445,0.000042419273,0.9907308,0.00027258755],"about_ca_topic_score_codex":0.00019090288,"about_ca_topic_score_gemma":0.00020938477,"teacher_disagreement_score":0.9876608,"about_ca_system_score_codex":0.000055046858,"about_ca_system_score_gemma":0.00028364413,"threshold_uncertainty_score":0.70788014},"labels":[],"label_agreement":null},{"id":"W2332932567","doi":"10.4161/viru.25779","title":"Endothelial activation and dysfunction in the pathogenesis of influenza A virus infection","year":2013,"lang":"en","type":"review","venue":"Virulence","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Centre for Global Health Research; Toronto General Hospital; University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Pathogenesis; Endothelial dysfunction; Immunology; Biology; Immune system; Innate immune system; Immune Dysfunction; Endothelium; Endothelial activation; Virus; Virology; Inflammation; Genetics","score_opus":0.05276258332487211,"score_gpt":0.2985554822158626,"score_spread":0.24579289889099049,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2332932567","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03563726,0.96260315,0.00026262438,0.000007453765,0.00031065228,0.0009907859,0.00007321029,0.000023106246,0.000091764974],"genre_scores_gemma":[0.002837075,0.99658334,0.000020082512,0.00009679181,0.00004126228,0.00028973192,0.00005152083,0.00001850211,0.00006168612],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99837726,0.0006436349,0.00044085135,0.00030952,0.0000457738,0.00018297033],"domain_scores_gemma":[0.9990618,0.00025043852,0.00036450557,0.0002685809,0.00004585962,0.000008809601],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032317848,0.00026251285,0.00062959787,0.0002448624,0.00008863648,0.000015653632,0.0001638159,0.0003641113,0.000114672264],"category_scores_gemma":[0.0000791048,0.0001658729,0.00011647765,0.0002975254,0.000116179435,0.00016392028,0.00006148683,0.0003499413,0.00020238932],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018328225,0.000061493294,0.000023578788,0.0010715126,0.00005349644,0.0000011183047,0.00013679573,3.3235034e-7,0.17216219,0.00048215358,0.00003628262,0.8259527],"study_design_scores_gemma":[0.0005137939,0.00027363986,0.0008187218,0.0030676837,0.0002714455,0.00006143076,0.000044356602,3.9828194e-7,0.037208065,0.00023352113,0.95718884,0.00031808444],"about_ca_topic_score_codex":0.00055870006,"about_ca_topic_score_gemma":0.000028514924,"teacher_disagreement_score":0.9571526,"about_ca_system_score_codex":0.00003997379,"about_ca_system_score_gemma":0.00006112019,"threshold_uncertainty_score":0.6764101},"labels":[],"label_agreement":null},{"id":"W2415226410","doi":"10.1080/21505594.2016.1197471","title":"Stimulation of biofilm formation by oxidative stress in<i>Campylobacter jejuni</i>under aerobic conditions","year":2016,"lang":"en","type":"letter","venue":"Virulence","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Campylobacter jejuni; Microaerophile; Campylobacter; Microbiology; Biofilm; Foodborne pathogen; Pathogen; Biology; Oxidative stress; Human pathogen; Stimulation; Campylobacteriosis; Bacteria; Biochemistry","score_opus":0.010576954832632301,"score_gpt":0.2414457461091478,"score_spread":0.2308687912765155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2415226410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96420294,0.00025095016,0.00095260964,0.03027141,0.00052909786,0.00053578493,0.0027255286,0.000022267493,0.0005094364],"genre_scores_gemma":[0.9310455,0.00042201663,0.00037376722,0.05465978,0.0013219584,0.000028475653,0.011244775,0.0000620581,0.00084171456],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985603,0.00011972468,0.00041872365,0.00040566875,0.00016737348,0.00032817686],"domain_scores_gemma":[0.99906105,0.000035447247,0.00036487367,0.00038625798,0.00011810947,0.000034282984],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009281289,0.00027294245,0.0002651698,0.00011347915,0.00005434201,0.000029033326,0.00019359721,0.0007446505,0.00010113234],"category_scores_gemma":[0.000027650518,0.00023859197,0.00008834528,0.00010158857,0.00014920211,0.000028411096,0.0000822454,0.00027366984,0.00003109053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025168305,0.000023838558,0.000086839034,0.000051784817,0.000022874787,0.0000023456978,0.000016487154,0.000012585332,0.8639103,0.000009187885,0.13550374,0.0003348411],"study_design_scores_gemma":[0.0004902803,0.00018134405,0.00041754922,0.0003306467,0.000026412747,0.0000062035397,0.000018067076,0.000019636014,0.87445545,0.000057375633,0.12362259,0.00037442605],"about_ca_topic_score_codex":0.000042461015,"about_ca_topic_score_gemma":0.000023166727,"teacher_disagreement_score":0.033157464,"about_ca_system_score_codex":0.00003958129,"about_ca_system_score_gemma":0.000049589336,"threshold_uncertainty_score":0.9729498},"labels":[],"label_agreement":null},{"id":"W2415657445","doi":"10.1080/21505594.2016.1196300","title":"Combinatorial strategies for combating invasive fungal infections","year":2016,"lang":"en","type":"review","venue":"Virulence","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":213,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Antifungal; Antifungal drug; Biology; Drug; Antifungal drugs; Drug resistance; Candida auris; Fungal pathogen; Pathogen; Intensive care medicine; Pharmacology; Microbiology; Medicine","score_opus":0.06712246147575954,"score_gpt":0.38376622209203737,"score_spread":0.31664376061627786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2415657445","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00013123256,0.99128073,0.0008244767,0.000023565588,0.0011234642,0.001642266,0.00020732942,0.00010358209,0.0046633636],"genre_scores_gemma":[0.0021823552,0.9961042,0.000095043455,0.000038135393,0.0007242803,0.000285465,0.00005428288,0.000043910426,0.00047235884],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982804,0.00009180629,0.00054839795,0.00048799874,0.00024128935,0.0003501157],"domain_scores_gemma":[0.997769,0.0011182111,0.000292746,0.00047504198,0.00021416284,0.00013085802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003239409,0.0003429876,0.0013201755,0.000107944514,0.00020515102,0.000055245582,0.00016958725,0.00033523864,0.00010633625],"category_scores_gemma":[0.00095589756,0.00023074416,0.00057865836,0.00020724183,0.00018282385,0.00016972046,0.00005706637,0.00034786196,0.00016542837],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007859198,0.0004414312,0.00067917473,0.05126228,0.00032169404,0.000034380213,0.00008417415,6.1168954e-8,0.000035742596,0.052982897,0.0027537004,0.8913259],"study_design_scores_gemma":[0.0006445282,0.0006731246,0.000032815416,0.03560638,0.0006374946,0.00003070592,0.00008475315,8.9943114e-7,0.000010456063,0.004155938,0.957785,0.00033791145],"about_ca_topic_score_codex":0.00001534026,"about_ca_topic_score_gemma":0.000029051245,"teacher_disagreement_score":0.9550313,"about_ca_system_score_codex":0.00018576162,"about_ca_system_score_gemma":0.0018747433,"threshold_uncertainty_score":0.9409474},"labels":[],"label_agreement":null},{"id":"W2461362259","doi":"10.1080/21505594.2016.1212154","title":"Heart aging measured with coronary artery calcium scoring and cardiovascular risk assessment algorithms in HIV infected patients","year":2016,"lang":"en","type":"review","venue":"Virulence","topic":"HIV-related health complications and treatments","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Coronary artery disease; Human immunodeficiency virus (HIV); Population; Incidence (geometry); Intensive care medicine; Coronary artery calcium; Risk assessment; Disease; Inflammation; Medicine; Cardiology; Internal medicine; Immunology; Computer science","score_opus":0.04019522747881564,"score_gpt":0.33846656869507247,"score_spread":0.2982713412162568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2461362259","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0029550083,0.9934818,0.0008013579,0.000033290795,0.000108926244,0.00211386,0.00011271257,0.00007397855,0.0003190758],"genre_scores_gemma":[0.006798422,0.99085605,0.0015971417,0.000026918344,0.00006114493,0.00042216078,0.00012432633,0.00006309522,0.000050716757],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9975521,0.0002861653,0.00057304895,0.0007083501,0.00047043277,0.00040989023],"domain_scores_gemma":[0.99851096,0.00013105449,0.0002176131,0.0007483777,0.00015549081,0.0002365289],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00036720926,0.00041019433,0.0014841023,0.00031678978,0.00015554142,0.000022404623,0.00009160841,0.0002004326,0.000014207816],"category_scores_gemma":[0.000040506973,0.00027060014,0.00022157955,0.00039320264,0.00007305416,0.000120066565,0.00006975585,0.0005645615,0.000082008555],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011726822,0.00022160864,0.1520959,0.0030269437,0.00070525566,0.00010556177,0.00003421779,0.0000018652817,2.4143512e-7,0.0000034632199,0.00003198381,0.8437612],"study_design_scores_gemma":[0.005407974,0.0006543653,0.47438058,0.12517655,0.0035120216,0.00047211262,0.0000138672285,0.00010702067,9.323653e-7,0.000013754619,0.3894644,0.0007964156],"about_ca_topic_score_codex":0.00012298347,"about_ca_topic_score_gemma":0.000006026085,"teacher_disagreement_score":0.8429648,"about_ca_system_score_codex":0.0004423681,"about_ca_system_score_gemma":0.00047073298,"threshold_uncertainty_score":0.9999746},"labels":[],"label_agreement":null},{"id":"W2470022149","doi":"10.1080/21505594.2016.1204509","title":"<i>Klebsiella</i>sweet deadly kiss","year":2016,"lang":"en","type":"letter","venue":"Virulence","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Queen's University; Queen's University Belfast","keywords":"Biology; Drug resistance; Antibiotic resistance; Antimicrobial; Multi drug resistant; Human health; Virology; Microbiology; KISS (TNC); One Health; Human pathogen; Public health; Antibiotics; Environmental health; Medicine; Bacteria; Genetics; Pathology","score_opus":0.009594018089697,"score_gpt":0.2375062214960059,"score_spread":0.22791220340630888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2470022149","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14039549,0.006764317,0.009510034,0.7678656,0.0077489084,0.0016866878,0.0016627676,0.00029583182,0.064070344],"genre_scores_gemma":[0.027543845,0.0027132302,0.0017671459,0.8600315,0.021753078,0.00003674005,0.0009083512,0.00026497015,0.08498117],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978096,0.00010052059,0.00032588924,0.0008581687,0.0002896589,0.00061615586],"domain_scores_gemma":[0.9984097,0.00003347561,0.00022476341,0.0011622419,0.00009989774,0.00006993375],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013945239,0.00041783485,0.00031391878,0.00005257299,0.00007632068,0.000060472106,0.000839392,0.001181329,0.00024242174],"category_scores_gemma":[0.000089498935,0.00033976868,0.00018047774,0.00006543924,0.00025588542,0.0000045025577,0.00022974506,0.00047038848,0.00071608793],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002204238,0.0000058871524,0.00059345324,0.000065727574,0.000041771946,0.00008877406,0.0000034449786,1.3524156e-7,0.14155485,0.000009468445,0.8565671,0.0010473585],"study_design_scores_gemma":[0.00015813705,0.00009574816,0.00034636477,0.0001649737,0.000023338702,0.00002856432,0.0000022704032,4.4981405e-7,0.046885077,0.00010918606,0.9517033,0.00048257748],"about_ca_topic_score_codex":0.00001351328,"about_ca_topic_score_gemma":0.0000075244216,"teacher_disagreement_score":0.11285164,"about_ca_system_score_codex":0.000030073099,"about_ca_system_score_gemma":0.00014289591,"threshold_uncertainty_score":0.9999054},"labels":[],"label_agreement":null},{"id":"W2525605172","doi":"10.1080/21505594.2016.1231278","title":"Aspergillosis and stem cell transplantation: An overview of experimental pathogenesis studies","year":2016,"lang":"en","type":"review","venue":"Virulence","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"","keywords":"Aspergillus fumigatus; Biology; Aspergillosis; Immunology; Immune system; Hematopoietic stem cell transplantation; Transplantation; Aspergillus; Pathogen; Stem cell; Host (biology); Microbiology; Medicine","score_opus":0.1887956689269359,"score_gpt":0.4231612137740763,"score_spread":0.2343655448471404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2525605172","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008021255,0.9909958,0.0000069643124,0.0000060749016,0.00007688314,0.00046071174,0.00019723091,0.000021522208,0.00021353249],"genre_scores_gemma":[0.00609517,0.9932742,0.00011510711,0.000028249797,0.00005686834,0.000050155744,0.000015083143,0.000027367809,0.00033778383],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983982,0.00014706569,0.0005298537,0.00047901462,0.00027267192,0.00017320525],"domain_scores_gemma":[0.9990258,0.00014603553,0.00021797007,0.0004192501,0.00007792692,0.00011298435],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022216795,0.00030429105,0.0014935628,0.00007353213,0.000057008296,0.0000063310918,0.00011236278,0.00015203604,0.00007468385],"category_scores_gemma":[0.000008994463,0.00019071343,0.00026358286,0.00013178596,0.00019811223,0.00010806672,0.000032388027,0.00009048464,0.000021834658],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051011542,0.00015943198,0.00056025106,0.07040574,0.00013011547,0.000053304175,0.000403528,3.6308452e-9,0.0011636484,0.000103287144,0.000026687829,0.926943],"study_design_scores_gemma":[0.002298788,0.0028397914,0.0036069783,0.31319848,0.007860842,0.00028189967,0.0031349438,0.0000014739933,0.016243516,0.000051846127,0.6484816,0.0019998457],"about_ca_topic_score_codex":0.0000051432226,"about_ca_topic_score_gemma":0.0000035642954,"teacher_disagreement_score":0.92494315,"about_ca_system_score_codex":0.00006788691,"about_ca_system_score_gemma":0.00012378134,"threshold_uncertainty_score":0.7777068},"labels":[],"label_agreement":null},{"id":"W2543690800","doi":"10.1080/21505594.2016.1253660","title":"<i>Burkholderia cenocepacia</i> virulence microevolution in the CF lung: Variations on a theme","year":2016,"lang":"en","type":"letter","venue":"Virulence","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Burkholderia cenocepacia; Burkholderia cepacia complex; Virulence; Biology; Cystic fibrosis; Microbiology; Microevolution; Burkholderia; Lung; Virology; Bacteria; Genetics; Medicine; Gene; Internal medicine; Population","score_opus":0.021556579708554846,"score_gpt":0.30359201647980555,"score_spread":0.2820354367712507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2543690800","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0025056186,0.0023040867,0.0032589529,0.97727,0.00084987585,0.0027337058,0.00072509237,0.00018134015,0.010171295],"genre_scores_gemma":[0.061589204,0.002733382,0.003146447,0.91541445,0.008353166,0.000725412,0.00046376698,0.0002155192,0.0073586702],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957133,0.0003858807,0.0005528544,0.0009009812,0.001439753,0.0010072374],"domain_scores_gemma":[0.99678445,0.0012605157,0.00025033345,0.0014187933,0.00018290359,0.00010300255],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00070626976,0.0004900764,0.0005446767,0.0004078064,0.00019916783,0.00009786616,0.0009137752,0.00052577525,0.00048981514],"category_scores_gemma":[0.0010074241,0.0002990074,0.00019419973,0.0006611135,0.00037748748,0.00023685486,0.00012858295,0.0022232414,0.0010634008],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018383397,0.00011353936,0.00022354243,0.00035909063,0.000045500965,0.0004464366,0.00036579143,0.000002410097,0.02855167,0.00037704778,0.96665937,0.0026717433],"study_design_scores_gemma":[0.001058135,0.0004111252,0.0030857988,0.0025083472,0.000084409774,0.00014022083,0.000045247147,0.00018730594,0.0012973445,0.0018599951,0.9888674,0.000454652],"about_ca_topic_score_codex":0.00014208829,"about_ca_topic_score_gemma":0.000020416768,"teacher_disagreement_score":0.0618556,"about_ca_system_score_codex":0.0005214574,"about_ca_system_score_gemma":0.00040507142,"threshold_uncertainty_score":0.9999462},"labels":[],"label_agreement":null},{"id":"W2598173756","doi":"10.1080/21505594.2017.1305533","title":"Arterial stiffness in HIV-infected youth and associations with HIV-related variables","year":2017,"lang":"en","type":"article","venue":"Virulence","topic":"HIV-related health complications and treatments","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Heart, Lung, and Blood Institute","keywords":"Arterial stiffness; Pulse wave velocity; Medicine; Internal medicine; Blood pressure; Body mass index; Cardiology; Subclinical infection","score_opus":0.02062373133248509,"score_gpt":0.2888983349490767,"score_spread":0.2682746036165916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2598173756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935068,0.00005646745,0.00011509586,0.0010887827,0.0000732488,0.00039012113,0.00013818342,0.00006077126,0.0045705186],"genre_scores_gemma":[0.99860525,0.00006152063,0.0005551728,0.000054048287,0.00002899211,0.000037630667,0.00014183922,0.00001454802,0.0005009986],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991268,0.00003166203,0.00022543574,0.00026091537,0.00013158779,0.00022363171],"domain_scores_gemma":[0.99912775,0.00005138192,0.00017654872,0.00043737373,0.000086382206,0.00012056946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001013368,0.00012218292,0.00022759326,0.00009146704,0.0004084114,0.00005672447,0.000087071836,0.000108362845,0.0000520875],"category_scores_gemma":[0.00012433741,0.00009833638,0.000016461994,0.00012867882,0.00009547202,0.00015194042,0.000033987493,0.00017322054,0.000098694225],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002623249,0.00065664866,0.98778737,0.000058267357,0.00013393232,0.000068848094,0.0029935658,0.000015752763,0.0011718522,0.002486966,0.00019525323,0.0041692187],"study_design_scores_gemma":[0.0038259593,0.00007070919,0.99452484,0.00031944024,0.00010444292,0.000015705798,0.00006331015,0.0005566994,0.000032056323,0.00021689066,0.00016578888,0.000104170205],"about_ca_topic_score_codex":0.0004027956,"about_ca_topic_score_gemma":0.00006294564,"teacher_disagreement_score":0.006737457,"about_ca_system_score_codex":0.00008672758,"about_ca_system_score_gemma":0.00013533384,"threshold_uncertainty_score":0.4010041},"labels":[],"label_agreement":null},{"id":"W2607651350","doi":"10.1080/21505594.2017.1323157","title":"Transcriptomic dissection of the horizontally acquired response regulator EsrB reveals its global regulatory roles in the physiological adaptation and activation of T3SS and the cognate effector repertoire in<i>Edwardsiella piscicida</i>during infection toward turbot","year":2017,"lang":"en","type":"article","venue":"Virulence","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity Western University; Western University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Effector; Virulence; Response regulator; Microbiology; Type three secretion system; Type VI secretion system; Gene; Genetics; Cell biology; Mutant","score_opus":0.014008972740312578,"score_gpt":0.2378753394103338,"score_spread":0.22386636667002124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2607651350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976115,0.0009426018,0.00001888,0.0005195421,0.0001410328,0.00070131756,0.00001961176,0.000011633396,0.00003385371],"genre_scores_gemma":[0.99965847,0.00018027134,0.0000032353953,0.000043329415,0.000013723804,0.000031462332,0.0000076076403,0.000005136049,0.00005678516],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99844724,0.0008084765,0.00027881347,0.00025717577,0.000059063645,0.00014923968],"domain_scores_gemma":[0.9992014,0.00011343437,0.0003102659,0.0003245418,0.00004144241,0.00000889838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007584728,0.0001459759,0.00023362007,0.000040761617,0.00028763435,0.000025189462,0.0002494479,0.0001478816,0.0000035734513],"category_scores_gemma":[0.00030717652,0.000077303055,0.00007330858,0.000114038194,0.0005868237,0.00019501074,0.00009241544,0.00012310295,0.0000010080989],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044307793,0.000051958083,0.0092052305,0.00008144586,0.00003576538,6.891807e-7,0.0017519511,0.000029356257,0.9827883,0.0004313565,0.000029820905,0.0011633498],"study_design_scores_gemma":[0.0018265396,0.00008557594,0.8784789,0.00023593707,0.00003988863,0.0000079895535,0.00038804332,0.000038554364,0.118587114,0.00021129311,0.000019126815,0.00008107935],"about_ca_topic_score_codex":0.00024093811,"about_ca_topic_score_gemma":0.00018211844,"teacher_disagreement_score":0.8692736,"about_ca_system_score_codex":0.000042464875,"about_ca_system_score_gemma":0.00002383622,"threshold_uncertainty_score":0.31523272},"labels":[],"label_agreement":null},{"id":"W2625648623","doi":"10.1080/21505594.2017.1342027","title":"The<i>Streptococcus suis</i>factor H-binding protein: A key to unlocking the blood-brain barrier and access the central nervous system?","year":2017,"lang":"en","type":"letter","venue":"Virulence","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus suis; Biology; Blood–brain barrier; Globotriaosylceramide; Microbiology; Central nervous system; Meningitis; Streptococcus; Bacteria; Disease; Neuroscience; Pathology; Medicine; Virulence; Biochemistry; Genetics; Gene","score_opus":0.02986286995238796,"score_gpt":0.3034684072181557,"score_spread":0.27360553726576775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2625648623","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5684786,0.00088124955,0.000046392823,0.41404077,0.0017313708,0.011198763,0.00046931917,0.00025673103,0.0028968265],"genre_scores_gemma":[0.8887521,0.00012711613,0.000046382225,0.068892546,0.006780331,0.005156151,0.000065644366,0.00021826135,0.029961437],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99708986,0.00022976792,0.00043997046,0.0007418965,0.0005707873,0.0009276956],"domain_scores_gemma":[0.99687076,0.00061603385,0.00040947084,0.0017593453,0.00013256504,0.00021184495],"candidate_categories":["metaepi_narrow","sts","scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.00031963096,0.00055522885,0.0005037108,0.0000982716,0.0024094488,0.0011520181,0.0009916971,0.00038079865,0.00006239814],"category_scores_gemma":[0.00047462765,0.00025136102,0.00023988677,0.00020920363,0.0004003577,0.00017362935,0.00044071727,0.0014392396,0.00007621034],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031202025,0.0002723529,0.27332824,0.0023303444,0.0042971196,0.0055844556,0.0024722572,0.000011123286,0.010007342,0.00076199474,0.6567358,0.04388696],"study_design_scores_gemma":[0.001307604,0.00039851235,0.048824564,0.0033638861,0.00085315376,0.0005254179,0.00018204589,0.00004586023,0.0049598995,0.000058890997,0.9388249,0.0006552782],"about_ca_topic_score_codex":0.00084515323,"about_ca_topic_score_gemma":0.00009939779,"teacher_disagreement_score":0.34514824,"about_ca_system_score_codex":0.00019046538,"about_ca_system_score_gemma":0.00021384063,"threshold_uncertainty_score":0.99999386},"labels":[],"label_agreement":null},{"id":"W2736738987","doi":"10.1080/21505594.2017.1356539","title":"Selective inhibition of host cell signaling for rotavirus antivirals: PI3K/Akt/mTOR-mediated rotavirus pathogenesis","year":2017,"lang":"en","type":"letter","venue":"Virulence","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"PI3K/AKT/mTOR pathway; Rotavirus; Autophagy; Protein kinase B; Biology; Virology; Pathogenesis; Signal transduction; Immunology; Virus; Cell biology; Apoptosis; Genetics","score_opus":0.04537885463987206,"score_gpt":0.3203553413070035,"score_spread":0.2749764866671314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2736738987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8876387,0.0035924083,0.0039912,0.08701783,0.001139079,0.0067604724,0.008021496,0.0002903303,0.0015485027],"genre_scores_gemma":[0.8816051,0.00200479,0.0035694444,0.10166775,0.00499291,0.00096426037,0.0029117162,0.00028558917,0.0019984865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954901,0.00048083926,0.0009941654,0.0010633171,0.00067203474,0.0012995731],"domain_scores_gemma":[0.9968106,0.00038866053,0.0010010473,0.0008963515,0.00067508937,0.0002282211],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00095501426,0.00062311126,0.0016460087,0.00043781154,0.000274304,0.000051587667,0.00046154426,0.0011356715,0.00010355082],"category_scores_gemma":[0.0019796055,0.0005826883,0.00057284156,0.00020477954,0.0005082942,0.0002407841,0.00017140579,0.0016810057,0.00014351154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008669271,0.00014070046,0.00253589,0.001638418,0.0001408835,0.00069282757,0.0000544139,0.000002522885,0.734025,0.00000132546,0.25803888,0.0018622283],"study_design_scores_gemma":[0.010091297,0.0120075205,0.0155373635,0.007717566,0.0008765619,0.00029548185,0.00010598254,0.00064452697,0.6353126,0.00044843068,0.3148537,0.0021089537],"about_ca_topic_score_codex":0.00044482114,"about_ca_topic_score_gemma":0.000016991546,"teacher_disagreement_score":0.09871238,"about_ca_system_score_codex":0.00020982699,"about_ca_system_score_gemma":0.0003684003,"threshold_uncertainty_score":0.99966246},"labels":[],"label_agreement":null},{"id":"W2754404230","doi":"10.1080/21505594.2017.1365217","title":"Effects of vitamin D supplementation on carotid intima-media thickness in HIV-infected youth","year":2017,"lang":"en","type":"letter","venue":"Virulence","topic":"Vitamin D Research Studies","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Heart, Lung, and Blood Institute","keywords":"Intima-media thickness; Biology; Vitamin; Human immunodeficiency virus (HIV); Vitamin D and neurology; Internal medicine; Immunology; Carotid arteries; Endocrinology; Medicine","score_opus":0.02289381434812735,"score_gpt":0.3071242686634311,"score_spread":0.28423045431530375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2754404230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7234195,0.00056905625,0.00018942852,0.25822824,0.0027528922,0.008048731,0.0016800126,0.00024822773,0.0048639122],"genre_scores_gemma":[0.9462681,0.0010142818,0.0005130925,0.044312898,0.0026461273,0.000549174,0.002210602,0.00015581578,0.0023298976],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99686944,0.00026795734,0.00046794335,0.0006275248,0.001158658,0.00060849823],"domain_scores_gemma":[0.9974048,0.0010778027,0.0003591881,0.00082941895,0.00024977908,0.00007902361],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004109648,0.0004271633,0.00090470724,0.0006626209,0.000100539466,0.000031234566,0.000446193,0.0005223902,0.00006420033],"category_scores_gemma":[0.0027747934,0.00035564398,0.0001435362,0.0002446597,0.00042812966,0.0001154155,0.00023569335,0.0020512168,0.00013902601],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002502964,0.0004905812,0.04921226,0.014391449,0.00028676822,0.0030003514,0.007905961,0.000003470903,0.017130109,0.0000146045095,0.9049348,0.002379341],"study_design_scores_gemma":[0.012398886,0.0020721962,0.83985406,0.02058717,0.0008097045,0.000044672077,0.0006914072,0.000039180588,0.111975126,0.000087785505,0.010147105,0.0012926904],"about_ca_topic_score_codex":0.00038360993,"about_ca_topic_score_gemma":0.000049478618,"teacher_disagreement_score":0.8947877,"about_ca_system_score_codex":0.00025972057,"about_ca_system_score_gemma":0.00021156284,"threshold_uncertainty_score":0.99988955},"labels":[],"label_agreement":null},{"id":"W2886512011","doi":"10.1080/21505594.2018.1504558","title":"Persistent Zika virus infection in porcine conceptuses is associated with elevated <i>in utero</i> cortisol levels","year":2018,"lang":"en","type":"letter","venue":"Virulence","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Shared Health; University of Saskatchewan","funders":"Centers for Disease Control and Prevention; Public Health Agency; Innovation Saskatchewan; Public Health Agency of Canada; Genome Canada","keywords":"In utero; Biology; Offspring; Zika virus; Glucocorticoid; Virology; Virus; Fetus; Immunology; Pregnancy; Genetics","score_opus":0.02568907710771699,"score_gpt":0.2650284191749967,"score_spread":0.23933934206727972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2886512011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93860483,0.0016854468,0.00006634497,0.055975486,0.00050735206,0.0017793746,0.0005963856,0.00018209405,0.00060265674],"genre_scores_gemma":[0.6051277,0.00059318903,0.000016624095,0.3899213,0.0009991147,0.00019704603,0.00047451048,0.00009787168,0.0025726845],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9968655,0.00016350664,0.00066363404,0.00087680825,0.0006898303,0.00074072124],"domain_scores_gemma":[0.99840975,0.00010856964,0.00042794654,0.00062414474,0.0002922145,0.00013735352],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018118719,0.00053970516,0.0010245544,0.00028391051,0.000062875864,0.000052746924,0.00020328561,0.0007185263,0.0009805463],"category_scores_gemma":[0.00018774395,0.00045556983,0.00025174674,0.0006099006,0.00021533918,0.00015104424,0.000055204775,0.0012606651,0.00012630521],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014412246,0.0009570826,0.24113195,0.00066224684,0.0009112252,0.008845018,0.00077011005,0.000026354131,0.0061735054,0.0000057526536,0.7367367,0.0023388541],"study_design_scores_gemma":[0.027665162,0.0097786775,0.62151074,0.015310627,0.0028647615,0.00039877102,0.00017127325,0.0035317126,0.0041091405,0.00006289555,0.3113009,0.0032953245],"about_ca_topic_score_codex":0.002351168,"about_ca_topic_score_gemma":0.0009772003,"teacher_disagreement_score":0.42543578,"about_ca_system_score_codex":0.00046389515,"about_ca_system_score_gemma":0.00032581788,"threshold_uncertainty_score":0.9999327},"labels":[],"label_agreement":null},{"id":"W2889144233","doi":"10.1080/21505594.2018.1504560","title":"Identification of Plasmodiophora brassicae effectors — A challenging goal","year":2018,"lang":"en","type":"review","venue":"Virulence","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Saskatchewan Canola Development Commission; Ministry of Agriculture - Saskatchewan","keywords":"Clubroot; Effector; Biology; Obligate; Identification (biology); Pathogen; Computational biology; Host (biology); Obligate parasite; Phytoplasma; Gene; Genetics; Brassica; Cell biology; Botany","score_opus":0.029503199697706074,"score_gpt":0.2770396661059105,"score_spread":0.24753646640820445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889144233","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0077934265,0.9911349,0.0000034493635,0.000008206836,0.00016344913,0.00031406523,0.00046192756,0.00003346657,0.000087133],"genre_scores_gemma":[0.004630519,0.9948903,0.0000057880943,0.0000058497853,0.00023897398,0.000038969,0.000119517346,0.0000016572849,0.00006844151],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998627,0.0001066714,0.0004395104,0.00036760815,0.00023962853,0.00021955301],"domain_scores_gemma":[0.9991423,0.00023836011,0.00038251965,0.00011140866,0.000045025903,0.000080392085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020347787,0.00022256975,0.00061148056,0.000022944829,0.00009312448,0.000032468404,0.00043574488,0.00018549076,0.000045322595],"category_scores_gemma":[0.00005062432,0.00008373032,0.00029113828,0.00034413097,0.000089522866,0.00005033338,0.000060907107,0.000103162834,0.00018400204],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000057917123,0.000050027917,0.000008627574,0.0032643836,0.00003873916,0.0000047431786,0.000009238151,3.527004e-7,0.0035230753,0.00003594192,0.00039002142,0.99266905],"study_design_scores_gemma":[0.00002853813,0.000090256886,0.0005221096,0.0063468013,0.0002255912,0.0000059358604,0.000010907336,0.000019174297,0.00039061494,0.00007070815,0.9919585,0.00033089152],"about_ca_topic_score_codex":0.000011069924,"about_ca_topic_score_gemma":0.000020687852,"teacher_disagreement_score":0.9923382,"about_ca_system_score_codex":0.000024021554,"about_ca_system_score_gemma":0.000023588404,"threshold_uncertainty_score":0.34144235},"labels":[],"label_agreement":null},{"id":"W2892913561","doi":"10.1080/21505594.2018.1514237","title":"Transcription factors Rv0081 and Rv3334 connect the early and the enduring hypoxic response of <i>Mycobacterium tuberculosis</i>","year":2018,"lang":"en","type":"article","venue":"Virulence","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Key Research and Development Program of China; Canadian Institutes of Health Research","keywords":"Regulon; Biology; Mycobacterium tuberculosis; Transcription (linguistics); Gene; Transcription factor; Genetics; Hypoxia (environmental); Tuberculosis; Transcriptional regulation; Regulation of gene expression; Regulator; Medicine","score_opus":0.02494798326512266,"score_gpt":0.28538165731404375,"score_spread":0.2604336740489211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2892913561","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916721,0.0012165675,0.000030745145,0.00634365,0.00009624823,0.00036777373,0.0000167283,0.000022450064,0.00023373032],"genre_scores_gemma":[0.9974623,0.0014150029,0.00003662581,0.0008617588,0.000112660986,0.000020598458,0.0000017729593,0.000011922401,0.00007740482],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99828315,0.000688205,0.00027027403,0.00025477385,0.00019638111,0.00030724777],"domain_scores_gemma":[0.9979044,0.0014767924,0.00006866501,0.00033998507,0.00008673507,0.0001233856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017171616,0.0001383781,0.0003135386,0.000069622416,0.0001911357,0.000021424015,0.00012436871,0.00008716085,0.000042114145],"category_scores_gemma":[0.001393913,0.00006798509,0.00007230516,0.00015293123,0.0014879836,0.0001100018,0.000060340928,0.00023865099,0.0000101658225],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0068004685,0.000037375823,0.06514951,0.00008955649,0.000116298535,0.000006268951,0.003785193,2.728734e-7,0.9211836,0.0008262514,0.00030613397,0.0016990651],"study_design_scores_gemma":[0.0016085886,0.00075647363,0.9324876,0.000104999046,0.0000903285,0.00009955432,0.00034937912,0.00016004365,0.06214771,0.00026353367,0.0018336105,0.00009819497],"about_ca_topic_score_codex":0.0005427599,"about_ca_topic_score_gemma":0.000045508103,"teacher_disagreement_score":0.86733806,"about_ca_system_score_codex":0.000018214543,"about_ca_system_score_gemma":0.00003747462,"threshold_uncertainty_score":0.5482538},"labels":[],"label_agreement":null},{"id":"W2903393356","doi":"10.1080/21505594.2018.1551010","title":"The Intertwined Life Cycles of Enterovirus and Autophagy","year":2018,"lang":"en","type":"review","venue":"Virulence","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Heart and Stroke Foundation of Canada","keywords":"Autophagy; Biology; Mitophagy; Obligate; Neurodegeneration; Viral replication; Virology; Virus; Genetics; Disease; Medicine","score_opus":0.04942296111247398,"score_gpt":0.373237598610355,"score_spread":0.32381463749788103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2903393356","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010394697,0.9976341,0.000019639652,0.000027961263,0.00026255863,0.00044686717,0.000031158008,0.000037475078,0.00050077465],"genre_scores_gemma":[0.00070046936,0.9980137,0.000039988598,0.00028346642,0.00027698686,0.000046996858,0.000008232791,0.00003277031,0.0005974082],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987519,0.00009198745,0.000483388,0.00028383348,0.00019255746,0.00019637994],"domain_scores_gemma":[0.9987287,0.00023196485,0.00029498327,0.000552521,0.000052619263,0.00013921827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019481085,0.0002567663,0.0009169019,0.000074974494,0.0000810257,0.000020744772,0.00026340943,0.00014958704,0.000074378935],"category_scores_gemma":[0.00016596029,0.00014006424,0.0002786462,0.00012275885,0.0004075011,0.00003816923,0.00011101235,0.00018718466,0.00009145108],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006157501,0.00005814803,0.000014870062,0.0059933257,0.00035115797,0.000020676116,0.00006783589,2.537765e-9,0.000010609978,0.00022682684,0.00082966423,0.9923653],"study_design_scores_gemma":[0.00028782908,0.00022818148,0.00014916972,0.0107929595,0.00063316943,0.000042305008,0.000013002338,0.000007320083,0.000104583276,0.00013876929,0.9874652,0.00013751804],"about_ca_topic_score_codex":0.000010125548,"about_ca_topic_score_gemma":0.0000011553838,"teacher_disagreement_score":0.9922278,"about_ca_system_score_codex":0.000022886941,"about_ca_system_score_gemma":0.00023459883,"threshold_uncertainty_score":0.5711653},"labels":[],"label_agreement":null},{"id":"W2913301244","doi":"10.1080/21505594.2019.1568174","title":"Galactosaminogalactan (GAG) and its multiple roles in <i>Aspergillus</i> pathogenesis","year":2019,"lang":"en","type":"review","venue":"Virulence","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Austrian Science Fund; Canada Research Chairs; CS Fund","keywords":"Aspergillosis; Pathogenesis; Aspergillus fumigatus; Biology; Aspergillus; Virulence; Disease; Microbiology; Immunology; Pneumonia; Medicine; Pathology; Gene","score_opus":0.06823210868936008,"score_gpt":0.3381879483475678,"score_spread":0.26995583965820774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913301244","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006093879,0.99118614,0.0000048260804,0.000019583253,0.00013190096,0.0011673725,0.00013159608,0.00004866183,0.0012160272],"genre_scores_gemma":[0.030425502,0.9680105,0.000058066136,0.00009140441,0.000093104856,0.000054441505,0.00006425069,0.000061254264,0.0011414667],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99741954,0.00016697565,0.0006836047,0.0008930984,0.00037315232,0.00046364687],"domain_scores_gemma":[0.99848354,0.0003668594,0.00022074993,0.0006612039,0.00007137443,0.0001962597],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00040652684,0.00051300705,0.0020581158,0.00021267416,0.000054737673,0.000026397329,0.00021311495,0.00046626953,0.0000824182],"category_scores_gemma":[0.00048615437,0.00039919993,0.00034143875,0.0004061959,0.00008795147,0.000131116,0.00012711335,0.00054836756,0.00031210075],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007308953,0.00017754042,0.030440694,0.03396487,0.00006244909,0.0001723794,0.000082134175,1.3996788e-7,0.0003970283,0.00004829692,0.00010105171,0.9344803],"study_design_scores_gemma":[0.00088468957,0.00019728538,0.019490233,0.037200607,0.0008508882,0.00008930641,0.00006922708,0.00007348353,0.000064545944,0.000008354039,0.94026095,0.00081042526],"about_ca_topic_score_codex":0.000023915458,"about_ca_topic_score_gemma":0.00012564899,"teacher_disagreement_score":0.9401599,"about_ca_system_score_codex":0.0001615408,"about_ca_system_score_gemma":0.00037555734,"threshold_uncertainty_score":0.999846},"labels":[],"label_agreement":null},{"id":"W2921862595","doi":"10.1080/21505594.2019.1596505","title":"The mitochondrial thiamine pyrophosphate transporter TptA promotes adaptation to low iron conditions and virulence in fungal pathogen <i>Aspergillus fumigatus</i>","year":2019,"lang":"en","type":"article","venue":"Virulence","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; National Natural Science Foundation of China; Society of the Friendly Sons of St. Patrick for the Relief of Emigrants from Ireland","keywords":"Aspergillus fumigatus; Biology; Virulence; Microbiology; Siderophore; Insertional mutagenesis; ATP-binding cassette transporter; Mutant; Pathogen; Virulence factor; Gene; Biochemistry; Transporter","score_opus":0.005366458765754511,"score_gpt":0.22963733031249284,"score_spread":0.22427087154673833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2921862595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969027,0.001189739,0.00021568168,0.00042544276,0.00027415014,0.0006242351,0.00015621039,0.000009338653,0.00020251478],"genre_scores_gemma":[0.9972839,0.0008423208,0.00038736858,0.0002551257,0.00012714854,0.00008438851,0.000080330734,0.000020932863,0.0009185047],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859476,0.00007016905,0.0002312993,0.0004789608,0.0002517748,0.0003730135],"domain_scores_gemma":[0.9993465,0.0000332805,0.000044474426,0.00035916487,0.00008398612,0.00013260021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017659184,0.00017118415,0.00012810614,0.000043697888,0.0001305779,0.00005705997,0.0002743367,0.00011837283,0.000030679457],"category_scores_gemma":[0.000052580966,0.00013317348,0.00004677535,0.00017123422,0.00012582984,0.00001198813,0.000097692864,0.00015324217,0.00008162791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023463622,0.000044787852,0.0025307045,0.000028822458,0.000008182731,0.000007515277,0.00021197129,0.00034926497,0.99300677,0.000056487483,0.000092982125,0.0034278592],"study_design_scores_gemma":[0.0016636084,0.0013983657,0.051976245,0.00016152149,0.000018437662,0.000023475037,0.00037839066,0.0025206339,0.9277004,0.00030940838,0.01324564,0.00060387066],"about_ca_topic_score_codex":0.00007426187,"about_ca_topic_score_gemma":0.00025525555,"teacher_disagreement_score":0.06530638,"about_ca_system_score_codex":0.000014485157,"about_ca_system_score_gemma":0.00008094859,"threshold_uncertainty_score":0.5430657},"labels":[],"label_agreement":null},{"id":"W2939482774","doi":"10.1080/21505594.2019.1605803","title":"The roles of apoptosis, autophagy and unfolded protein response in arbovirus, influenza virus, and HIV infections","year":2019,"lang":"en","type":"review","venue":"Virulence","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":245,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Assiniboine Community College; CancerCare Manitoba; Children's Hospital Research Institute of Manitoba; University of Manitoba","funders":"","keywords":"Unfolded protein response; Biology; Autophagy; Cell biology; Virology; Endoplasmic reticulum; Apoptosis","score_opus":0.03357225005789052,"score_gpt":0.3463665985697709,"score_spread":0.3127943485118804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2939482774","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13973191,0.8584112,0.000004062558,0.00003539968,0.000053362073,0.0015877491,0.00006848516,0.000034127126,0.000073688185],"genre_scores_gemma":[0.0048198695,0.99432766,0.000034626017,0.00012271009,0.00004423456,0.00030529016,0.000008231617,0.00004273736,0.00029464514],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979717,0.00041779407,0.0006732456,0.00041867077,0.00023924025,0.0002793626],"domain_scores_gemma":[0.9982348,0.00059695105,0.00036063226,0.0006344754,0.000048319933,0.00012479787],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000663681,0.00036457393,0.0011678737,0.0002863492,0.00010682548,0.000036074878,0.00018097459,0.0002898879,0.00002108985],"category_scores_gemma":[0.00033609953,0.00024078405,0.00016900858,0.00040389807,0.0003175916,0.00009782807,0.00011612136,0.00045273767,0.000036350477],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017666543,0.00041466978,0.0003891686,0.017130924,0.0004828398,0.00003335314,0.0004421288,0.0000013859801,0.0021429928,0.001502899,0.000112782145,0.9755802],"study_design_scores_gemma":[0.0014471442,0.0005811418,0.0020391326,0.023227885,0.00072971726,0.00005617726,0.000046622805,0.000026082067,0.0015110434,0.00039404823,0.96950126,0.00043972526],"about_ca_topic_score_codex":0.00004158546,"about_ca_topic_score_gemma":0.000016091128,"teacher_disagreement_score":0.97514045,"about_ca_system_score_codex":0.00006593342,"about_ca_system_score_gemma":0.0005228663,"threshold_uncertainty_score":0.9818889},"labels":[],"label_agreement":null},{"id":"W2945868191","doi":"10.1080/21505594.2019.1621648","title":"<i>Edwardsiella piscicida</i>: A versatile emerging pathogen of fish","year":2019,"lang":"en","type":"review","venue":"Virulence","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":179,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity Western University; Western University","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Biology; Virulence; Microbiology; Pathogen; Resistome; Aquaculture; Bacteria; Human pathogen; Antibiotics; Fish <Actinopterygii>; Antibiotic resistance; Gene; Fishery","score_opus":0.03388151985653918,"score_gpt":0.2975423631688493,"score_spread":0.2636608433123101,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2945868191","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000025264775,0.99095255,0.000029597059,0.000016671065,0.0009030478,0.0007796401,0.0009056611,0.00006290573,0.0063246367],"genre_scores_gemma":[0.00005494959,0.9899199,0.00002522862,0.00014828364,0.00004189909,0.00003647681,0.0011309629,0.000046367306,0.00859596],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981492,0.0002068209,0.0006001311,0.0005662748,0.000054268337,0.00042327424],"domain_scores_gemma":[0.9986065,0.00009576907,0.0005442689,0.0006725791,0.00005598578,0.000024864947],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019398212,0.00045792057,0.0014422848,0.00019290038,0.00008016555,0.000014813865,0.0007317652,0.00046529557,0.0011323799],"category_scores_gemma":[0.00004431349,0.00036820103,0.0006552057,0.00030178015,0.0001587908,0.00007045616,0.00034625118,0.00036775414,0.002349738],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002253341,0.00012272732,0.0000067075575,0.018591888,0.0008646237,0.000014311895,0.00025415723,7.251809e-7,0.004139339,0.00033088448,0.1040063,0.8716458],"study_design_scores_gemma":[0.0002582474,0.000045657063,0.000001886273,0.0049424213,0.0013032452,0.000012593494,0.00006033605,2.1592739e-7,0.00021734387,0.0000043219075,0.9927754,0.00037838003],"about_ca_topic_score_codex":0.000030854237,"about_ca_topic_score_gemma":0.000005016739,"teacher_disagreement_score":0.88876903,"about_ca_system_score_codex":0.000040577303,"about_ca_system_score_gemma":0.00015758339,"threshold_uncertainty_score":0.999877},"labels":[],"label_agreement":null},{"id":"W2950235338","doi":"10.1080/21505594.2019.1624102","title":"Three new serine-protease autotransporters of <i>Enterobacteriaceae</i> (SPATEs) from extra-intestinal pathogenic <i>Escherichia coli</i> and combined role of SPATEs for cytotoxicity and colonization of the mouse kidney","year":2019,"lang":"en","type":"article","venue":"Virulence","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Montréal; Institut Pasteur","keywords":"Biology; Microbiology; Enterobacteriaceae; Virulence; Bacterial adhesin; Escherichia coli; Serine protease; Virology; Gene; Protease; Genetics; Enzyme","score_opus":0.007922276705106663,"score_gpt":0.21661017198623958,"score_spread":0.2086878952811329,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950235338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99673223,0.0004227301,0.0014392909,0.00007003283,0.000031002568,0.00084450474,0.0004406632,0.0000063260504,0.000013206646],"genre_scores_gemma":[0.99695057,0.00029355186,0.0025207794,0.000085919186,0.000017441893,0.000031875934,0.000045316858,0.000016924118,0.00003760824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999089,0.000044154636,0.0002734172,0.00028866515,0.00013589108,0.00016888234],"domain_scores_gemma":[0.9991984,0.000038129896,0.00021689688,0.00030225213,0.00014947791,0.00009487628],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013847068,0.00015243546,0.00025651706,0.000018999142,0.000039354294,0.000008487912,0.00020548225,0.00007805851,0.000008512444],"category_scores_gemma":[0.00017676946,0.00012491547,0.00006459705,0.00010422679,0.00021406356,0.000010977084,0.00014658125,0.00006576582,1.98106e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047784907,0.000056817877,0.24148174,0.00014376602,0.000047600584,1.3013305e-7,0.000074860545,0.000014134325,0.7575491,0.000020445093,0.00004371831,0.00008982671],"study_design_scores_gemma":[0.0010998019,0.000639016,0.13262507,0.00009697096,0.000035931018,7.092357e-7,0.000045263656,0.0010755068,0.86401606,0.00014288763,0.00011067469,0.00011213669],"about_ca_topic_score_codex":0.00036913456,"about_ca_topic_score_gemma":0.00014269624,"teacher_disagreement_score":0.10885667,"about_ca_system_score_codex":0.0000056144604,"about_ca_system_score_gemma":0.00013826002,"threshold_uncertainty_score":0.50939053},"labels":[],"label_agreement":null},{"id":"W2989675531","doi":"10.1080/21505594.2019.1696621","title":"New insights into microvascular injury to inform enhanced diagnostics and therapeutics for severe malaria","year":2019,"lang":"en","type":"review","venue":"Virulence","topic":"Malaria Research and Control","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto General Hospital; University Health Network","funders":"Canadian Institutes of Health Research","keywords":"Malaria; Immunology; Immune system; Endothelial activation; Biology; Endothelium; Disease; Cerebral Malaria; Inflammation; Endothelial dysfunction; Intensive care medicine; Triage; Medicine; Plasmodium falciparum; Pathology; Internal medicine","score_opus":0.036449871030272175,"score_gpt":0.35338166335331334,"score_spread":0.31693179232304114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2989675531","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000031050637,0.98571414,0.008101527,0.0005195538,0.00024488126,0.0050001917,0.000035888326,0.000040007224,0.00031275515],"genre_scores_gemma":[0.00007377516,0.99136204,0.004116275,0.0010477133,0.0003578425,0.0003632325,0.0000812587,0.000069509966,0.0025283662],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979874,0.00005433979,0.0005213127,0.0005418908,0.0004108722,0.00048418096],"domain_scores_gemma":[0.9978855,0.0004952048,0.00015575025,0.0007829443,0.00021230467,0.0004682882],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022557838,0.00045848865,0.0015672327,0.00026431843,0.00009735673,0.00008656017,0.00035549336,0.0004422059,0.00008126302],"category_scores_gemma":[0.00048689003,0.00033810223,0.0003658938,0.00038230646,0.00004451481,0.00010483857,0.00019926032,0.0005006793,0.00029554658],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014392128,0.00002785195,0.0000014863798,0.013807759,0.00039316333,0.00000721959,0.00018159054,1.0807704e-7,0.00012323628,0.001181086,0.001285077,0.9828475],"study_design_scores_gemma":[0.000964888,0.000775928,0.000019118563,0.007730738,0.0012488517,0.000018869292,0.00001334352,0.000013754657,0.000161941,0.00024691308,0.98842365,0.00038203652],"about_ca_topic_score_codex":0.000046755908,"about_ca_topic_score_gemma":0.000015827132,"teacher_disagreement_score":0.98713857,"about_ca_system_score_codex":0.00013086392,"about_ca_system_score_gemma":0.0012590068,"threshold_uncertainty_score":0.9999071},"labels":[],"label_agreement":null},{"id":"W3036124869","doi":"10.1080/21505594.2020.1780088","title":"Autophagy and SARS-CoV-2 infection: A possible smart targeting of the autophagy pathway","year":2020,"lang":"en","type":"editorial","venue":"Virulence","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CancerCare Manitoba; Research Institute in Oncology and Hematology; Children's Hospital Research Institute of Manitoba; University of Manitoba","funders":"National Institute of General Medical Sciences; NIH Office of the Director; National Institutes of Health","keywords":"Autophagy; Biology; Apoptosis; Coronavirus; Programmed cell death; Virology; Virus; Viral life cycle; Viral replication; Cell biology; Coronavirus disease 2019 (COVID-19); Medicine; Genetics; Disease","score_opus":0.014691028835287398,"score_gpt":0.28324042792163495,"score_spread":0.26854939908634756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3036124869","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2637511,0.010440493,0.00009559953,0.0004844416,0.720136,0.0012439223,0.0003946316,0.00035711544,0.0030967097],"genre_scores_gemma":[0.34437397,0.0030527643,0.00044424055,0.0016902004,0.6479933,0.00013842889,0.00019219737,0.00020932728,0.0019055534],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975522,0.00013320905,0.0005506789,0.0006047888,0.0008185937,0.00034049925],"domain_scores_gemma":[0.9983603,0.0002629656,0.00043148638,0.00058995467,0.0002284463,0.00012686735],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027337015,0.00040728835,0.00072928023,0.00009672247,0.0001824933,0.000042272237,0.0002893656,0.0005044291,0.00008069841],"category_scores_gemma":[0.0008597729,0.00029696192,0.00029474948,0.00041177776,0.00028393028,0.00011613869,0.00022552091,0.00097133726,0.00004548436],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034198022,0.00021939422,0.00088565843,0.0013816928,0.0003402564,0.00018313061,0.00060377014,0.0000014759839,0.091077246,0.00019126221,0.9010778,0.0036963231],"study_design_scores_gemma":[0.0013675307,0.0003528339,0.003948022,0.00081912987,0.0002514098,0.000018965333,0.000013088181,0.00015401383,0.27065217,0.00042992606,0.7216569,0.0003359664],"about_ca_topic_score_codex":0.0003213948,"about_ca_topic_score_gemma":0.000010958513,"teacher_disagreement_score":0.17957494,"about_ca_system_score_codex":0.000080561214,"about_ca_system_score_gemma":0.00096372823,"threshold_uncertainty_score":0.99994826},"labels":[],"label_agreement":null},{"id":"W3036707022","doi":"10.1080/21505594.2020.1768018","title":"Transcriptional host–pathogen responses of <i>Pseudogymnoascus destructans</i> and three species of bats with white-nose syndrome","year":2020,"lang":"en","type":"article","venue":"Virulence","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Winnipeg; Trent University; Ministry of Natural Resources and Forestry","funders":"Grantová Agentura České Republiky; Government of Ontario; Bat Conservation International","keywords":"Myotis lucifugus; Biology; Host (biology); Context (archaeology); Zoology; Hibernation (computing); Ecology; Pathogen; Captivity; Torpor; Immunology","score_opus":0.02836653855475504,"score_gpt":0.19134877380899026,"score_spread":0.16298223525423522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3036707022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996032,0.00084258424,0.000008379056,0.0024796366,0.0000317331,0.00010554124,0.00024067008,0.000018664514,0.00024077104],"genre_scores_gemma":[0.99908024,0.0003041244,0.00030387397,0.00023062588,0.00002564243,0.0000066576868,0.00000648534,6.4830516e-7,0.00004170521],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99927646,0.000059186845,0.00017833781,0.00023107133,0.00009856018,0.0001563686],"domain_scores_gemma":[0.999578,0.00019099274,0.00008522338,0.00003637411,0.000054181826,0.00005520171],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110159905,0.00011163688,0.00024992917,0.000008443796,0.00010913871,0.0000044011995,0.00015844959,0.00008474948,0.0001833839],"category_scores_gemma":[0.000056198263,0.000042575277,0.000040767663,0.00018930058,0.00063624757,0.00007634717,0.00004959587,0.00008374994,0.000004228775],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033510014,0.000026493004,0.40168273,0.000017835002,0.000029485334,0.000013367397,0.00020843736,9.72908e-7,0.5965792,0.00040320164,0.00005405699,0.0006491557],"study_design_scores_gemma":[0.00014398328,0.0011544218,0.9920717,0.000021718424,0.000023270175,0.000043268705,0.00034749613,0.000004769013,0.0053654565,0.00019890079,0.00052628276,0.000098722034],"about_ca_topic_score_codex":0.000018800529,"about_ca_topic_score_gemma":0.00027986543,"teacher_disagreement_score":0.5912137,"about_ca_system_score_codex":0.000003321504,"about_ca_system_score_gemma":0.00001017042,"threshold_uncertainty_score":0.23442806},"labels":[],"label_agreement":null},{"id":"W3091158684","doi":"10.1080/21505594.2020.1827885","title":"Live imaging and quantitative analysis of <i>Aspergillus fumigatus</i> growth and morphology during inter-microbial interaction with <i>Pseudomonas aeruginosa</i>","year":2020,"lang":"en","type":"article","venue":"Virulence","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"National Cancer Institute; Cambridge Institute for Medical Research, University of Cambridge; National Institutes of Health","keywords":"Biology; Microbiology; Pseudomonas aeruginosa; Mycelium; Aspergillus fumigatus; Pyoverdine; Hypha; Pyocyanin; Virulence; Bacteria; Biochemistry; Gene; Botany","score_opus":0.007612470316849538,"score_gpt":0.22066013517945068,"score_spread":0.21304766486260115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3091158684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986002,0.0003026072,0.0005256866,0.00032978418,0.000050538325,0.000072460774,0.000045243796,0.000009175085,0.00006429114],"genre_scores_gemma":[0.9976808,0.0003081681,0.0015120666,0.0003976335,0.000046656485,0.0000015539325,0.000037412257,0.000011837638,0.000003889684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99918646,0.00004890428,0.00017669269,0.00038517843,0.000049473416,0.00015328123],"domain_scores_gemma":[0.99961156,0.000017603892,0.00012644922,0.00010486291,0.00006406227,0.00007544214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043042808,0.00014296634,0.0002335035,0.000064051834,0.000058560076,0.000025691128,0.00006267136,0.00005531594,0.00000667302],"category_scores_gemma":[0.000041238894,0.00012744396,0.000046880174,0.00018293413,0.00021171223,0.000017052518,0.00013392855,0.0000867004,9.639147e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050845067,0.000013335853,0.010988697,0.000032401884,0.00020398873,0.000012730183,0.0005006291,0.000010648831,0.9873559,0.000038944672,0.000015719505,0.00031857667],"study_design_scores_gemma":[0.0005451297,0.00036759645,0.01161911,0.000044239656,0.00026733836,0.00006681452,0.0006991344,0.00039569256,0.985652,0.0000020719604,0.00012345497,0.00021735868],"about_ca_topic_score_codex":0.00016261237,"about_ca_topic_score_gemma":0.000050890118,"teacher_disagreement_score":0.0017038175,"about_ca_system_score_codex":0.0000045729653,"about_ca_system_score_gemma":0.000014403494,"threshold_uncertainty_score":0.51970136},"labels":[],"label_agreement":null},{"id":"W3154981103","doi":"10.1080/21505594.2021.1886777","title":"Pathogenicity and virulence of <i>Clostridium perfringens</i>","year":2021,"lang":"en","type":"article","venue":"Virulence","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":243,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada","keywords":"Clostridium perfringens; Microbiology; Virulence; Biology; Toxin; Bacterial adhesin; Pathogen; Enteritis; Bacteria; Gene; Genetics","score_opus":0.020779135447809644,"score_gpt":0.28278564661034566,"score_spread":0.26200651116253604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3154981103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98897064,0.005512822,0.00009000884,0.00074724015,0.000114742266,0.00022429528,0.00008104413,0.000054141405,0.004205058],"genre_scores_gemma":[0.99357903,0.0042425185,0.0009159649,0.00026850842,0.00013747982,0.000014043367,0.000017146103,0.00002788062,0.0007974261],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99782956,0.000076610166,0.00043288214,0.0005806137,0.0006240022,0.00045631075],"domain_scores_gemma":[0.99835837,0.00015655553,0.000097912016,0.00064305967,0.00043476335,0.00030934802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028789818,0.00022527292,0.00046958492,0.00011365063,0.000108944056,0.000028282277,0.00015185309,0.00014339501,0.00042961515],"category_scores_gemma":[0.0005307191,0.00021607657,0.00015190676,0.00060160103,0.0002905109,0.00009701691,0.000276821,0.0003723698,0.000058363603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016199745,0.0002690111,0.0069984356,0.0003049231,0.000047727688,0.00032362124,0.00012352093,0.0000026160003,0.98025036,0.00030086542,0.00045435634,0.01076258],"study_design_scores_gemma":[0.0009032887,0.00025929496,0.008467748,0.00021536817,0.00008833249,0.00043032982,0.00021009662,0.00020763348,0.9849053,0.00006905457,0.004041008,0.0002025528],"about_ca_topic_score_codex":0.00007503918,"about_ca_topic_score_gemma":0.000009779695,"teacher_disagreement_score":0.010560027,"about_ca_system_score_codex":0.000062916806,"about_ca_system_score_gemma":0.00044481733,"threshold_uncertainty_score":0.8811347},"labels":[],"label_agreement":null},{"id":"W3175950262","doi":"10.1080/21505594.2021.1926408","title":"An Organ System-Based Synopsis of<i>Pseudomonas aeruginosa</i>Virulence","year":2021,"lang":"en","type":"review","venue":"Virulence","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut National de la Recherche Scientifique","funders":"Genome Canada; Canadian Institutes of Health Research; Canada Research Chairs; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Canada; National Heart, Lung, and Blood Institute; American Lung Association","keywords":"Pseudomonas aeruginosa; Virulence; Otitis; Pathogen; Context (archaeology); Microbiology; Pneumonia; Biology; Immunology; Sepsis; Cystic fibrosis; Antibiotic resistance; Antibiotics; Medicine; Internal medicine; Bacteria","score_opus":0.02032025553737742,"score_gpt":0.2906533839812116,"score_spread":0.27033312844383417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175950262","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0038738104,0.9941048,0.0001984796,0.000007362601,0.0006682521,0.00040614387,0.00035817391,0.00005111862,0.00033182802],"genre_scores_gemma":[0.007168421,0.9891418,0.0019669565,0.000075194126,0.0004931255,0.000030449048,0.0009053237,0.00010292248,0.00011576882],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970033,0.00040511455,0.00081365317,0.0010362307,0.00027700228,0.00046469813],"domain_scores_gemma":[0.9974801,0.00004673149,0.0006012391,0.0014593746,0.00021298828,0.00019956153],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034324985,0.0006054922,0.0015233996,0.00011141762,0.00011739127,0.00007551614,0.00068368553,0.0007231632,0.000033154716],"category_scores_gemma":[0.000100051875,0.0005441127,0.00056122104,0.0003865125,0.00018708361,0.000008987299,0.00017750979,0.00024961962,0.000035877227],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003207271,0.00020810218,0.000016818567,0.018762862,0.00025495177,0.00013464874,0.000016423359,0.0000091213715,0.42327642,0.00023229585,0.00062314543,0.55643314],"study_design_scores_gemma":[0.00019793796,0.0002769485,0.0000034010504,0.014556582,0.00051311764,0.00016185625,0.000033368473,0.000016909788,0.07694583,4.1415396e-7,0.9064609,0.0008327533],"about_ca_topic_score_codex":0.0000732336,"about_ca_topic_score_gemma":0.000011746884,"teacher_disagreement_score":0.9058377,"about_ca_system_score_codex":0.00004873622,"about_ca_system_score_gemma":0.0007625908,"threshold_uncertainty_score":0.999701},"labels":[],"label_agreement":null},{"id":"W3199108019","doi":"10.1080/21505594.2021.1968684","title":"A clubroot pathogen effector targets cruciferous cysteine proteases to suppress plant immunity","year":2021,"lang":"en","type":"article","venue":"Virulence","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University of Saskatchewan","funders":"Saskatchewan Canola Development Commission; Ministry of Agriculture - Saskatchewan","keywords":"Clubroot; Biology; Effector; Arabidopsis; Proteases; Apoplast; Pathogen; Microbiology; Virulence; Callose; Plant Immunity; Mutant; Botany; Genetics; Gene; Brassica; Biochemistry; Cell wall","score_opus":0.012775436152712783,"score_gpt":0.20901949776057366,"score_spread":0.19624406160786087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199108019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99374855,0.0024532434,0.000011280014,0.00036141087,0.000103239996,0.00033211356,0.0027211616,0.00006797051,0.00020100981],"genre_scores_gemma":[0.998263,0.00020861792,0.00018297405,0.00046223638,0.00016727412,0.00007815323,0.000398766,0.0000013004275,0.00023768062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875426,0.00015456538,0.00017435478,0.00033600998,0.00023746771,0.0003433187],"domain_scores_gemma":[0.9993558,0.00016244384,0.000043710133,0.00012647438,0.0000815249,0.00023003788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011166834,0.00015754311,0.0001952537,0.000008519084,0.0001953233,0.00007042711,0.00028310998,0.0000640983,0.00018913968],"category_scores_gemma":[0.00014995025,0.000067215005,0.00008102937,0.00027494077,0.000027760903,0.00006207675,0.00014381336,0.00008968096,0.0001938981],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009327211,0.00012672979,0.0024025177,0.00003073761,0.000011274437,0.0002217459,0.000035858466,0.000010367888,0.98788625,0.000012923992,0.0011399692,0.008028376],"study_design_scores_gemma":[0.00034157358,0.0007279975,0.39273643,0.00038308016,0.000047947164,0.000094010946,0.00022344985,0.0000776166,0.5023966,0.00027786675,0.10192749,0.00076594495],"about_ca_topic_score_codex":0.00012402431,"about_ca_topic_score_gemma":0.00066051475,"teacher_disagreement_score":0.48548967,"about_ca_system_score_codex":0.000017450018,"about_ca_system_score_gemma":0.000023582868,"threshold_uncertainty_score":0.27409482},"labels":[],"label_agreement":null},{"id":"W4200353538","doi":"10.1080/21505594.2021.2019959","title":"ABO blood group is involved in the quality of the specific immune response anti-SARS-CoV-2","year":2021,"lang":"en","type":"article","venue":"Virulence","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Comunidad de Madrid; National Institute on Minority Health and Health Disparities; Instituto de Salud Carlos III; Interreg; Instituto de Investigación Sanitaria Gregorio Marañón; Stollery Children’s Hospital Foundation","keywords":"Immune system; Biology; Immunology; Immunity; Coronavirus; Antibody; Virology; Peripheral blood mononuclear cell; ABO blood group system; Vaccination; Cellular immunity; Virus; Disease; Coronavirus disease 2019 (COVID-19); Medicine; Internal medicine; Infectious disease (medical specialty); In vitro","score_opus":0.09813229243325912,"score_gpt":0.3822059425168461,"score_spread":0.284073650083587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200353538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991936,0.003123754,0.000020705555,0.0034399913,0.00013066354,0.00038714873,0.000020717775,0.000020619354,0.0009203982],"genre_scores_gemma":[0.96991867,0.000085674554,0.00007922025,0.029776465,0.00006550606,0.000027881384,0.0000013740555,0.000017032395,0.000028149565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99666184,0.001070439,0.00054916757,0.0004075942,0.00089801225,0.00041292552],"domain_scores_gemma":[0.9973825,0.000790489,0.0001332635,0.0014912869,0.00018513913,0.000017291495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029911848,0.00016856444,0.00038071294,0.00010520774,0.00010126637,0.000038581427,0.00066351367,0.00011593236,0.000019540508],"category_scores_gemma":[0.0010484707,0.00010310618,0.00021037186,0.0012991134,0.00034618573,0.000087796034,0.0002297901,0.0005383038,0.00005826791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007781312,0.0004722191,0.060907558,0.000099048055,0.00003747786,0.00012793555,0.001318741,3.6202664e-8,0.93473566,0.00084857614,0.00026950127,0.00040512145],"study_design_scores_gemma":[0.0011437167,0.00008470646,0.28067607,0.00015567342,0.000018056158,0.000020068757,0.00087605795,0.000012177529,0.7018635,0.0003363192,0.014724776,0.00008886576],"about_ca_topic_score_codex":0.0006609146,"about_ca_topic_score_gemma":0.00014444807,"teacher_disagreement_score":0.23287214,"about_ca_system_score_codex":0.000057665155,"about_ca_system_score_gemma":0.00036427422,"threshold_uncertainty_score":0.42045477},"labels":[],"label_agreement":null},{"id":"W4200602011","doi":"10.1080/21505594.2021.2010398","title":"Paeoniflorin reduce <i>luxS</i>/AI-2 system-controlled biofilm formation and virulence in <i>Streptococcus suis</i>","year":2021,"lang":"en","type":"article","venue":"Virulence","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Natural Science Foundation of China","keywords":"Streptococcus suis; Biofilm; Microbiology; Quorum sensing; Virulence; Biology; Bacteria; Biochemistry; Gene","score_opus":0.015709688508437996,"score_gpt":0.28424041471574896,"score_spread":0.26853072620731094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200602011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98880446,0.0015552125,0.00048254232,0.0006477234,0.00035034146,0.0013536187,0.00003134254,0.0001558507,0.0066189207],"genre_scores_gemma":[0.9976748,0.0004493229,0.00033258315,0.00031509952,0.00010001755,0.00048206165,0.00003073233,0.000019681893,0.00059566787],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982728,0.00009813199,0.0005261679,0.00048528603,0.00025075825,0.00036688492],"domain_scores_gemma":[0.9989705,0.00011418057,0.00012935269,0.00043699797,0.00016933965,0.00017961203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020978737,0.00024785477,0.0005280619,0.00017201772,0.00012766094,0.00006944514,0.00006841457,0.00013462968,0.00008622805],"category_scores_gemma":[0.0001571824,0.00021220808,0.00011817075,0.0005764493,0.00008446508,0.00036466896,0.000066744535,0.00024185257,0.00012106611],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015588494,0.0017970945,0.66950595,0.0014255345,0.00034964908,0.0021629091,0.0007385258,0.00007370027,0.27408132,0.0061887763,0.0014031427,0.04071452],"study_design_scores_gemma":[0.049284752,0.0012010564,0.3641651,0.0044835107,0.0007138455,0.0021796126,0.0020404444,0.008498645,0.5560406,0.000653707,0.009461487,0.0012772606],"about_ca_topic_score_codex":0.00022645759,"about_ca_topic_score_gemma":0.00007856412,"teacher_disagreement_score":0.3053409,"about_ca_system_score_codex":0.00020809364,"about_ca_system_score_gemma":0.00014395539,"threshold_uncertainty_score":0.8653594},"labels":[],"label_agreement":null},{"id":"W4206023599","doi":"10.1080/21505594.2021.2006890","title":"Versatile lifestyles of <i>Edwardsiella</i>: Free-living, pathogen, and core bacterium of the aquatic resistome","year":2021,"lang":"en","type":"article","venue":"Virulence","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity Western University; Western University","funders":"National Natural Science Foundation of China; Li Ka Shing Foundation","keywords":"Edwardsiella tarda; Resistome; Biology; rpoS; Microbiology; Edwardsiella ictaluri; Plasmid; Microbiome; Horizontal gene transfer; Pathogen; Bacteria; Ecology; Gene; Mobile genetic elements; Genetics; Fish <Actinopterygii>; Phylogenetics; Gene expression; Fishery","score_opus":0.009124797062516156,"score_gpt":0.20334755313953662,"score_spread":0.19422275607702047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206023599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923974,0.0055105765,0.000022393879,0.000150707,0.00028214278,0.00013097335,0.00018284048,0.0000152082175,0.0013077034],"genre_scores_gemma":[0.9959626,0.0002516538,0.00008197566,0.00016376638,0.000010556209,0.000003795234,0.00002945888,0.000007872153,0.0034882964],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926186,0.00011614749,0.0002211633,0.00020625872,0.000038503586,0.0001560588],"domain_scores_gemma":[0.9991862,0.00010829572,0.00016245706,0.00046970663,0.000059078502,0.000014260232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012245262,0.00011314062,0.000200828,0.000029001274,0.00007779071,0.0000059275144,0.0002856926,0.00009095402,0.0003117757],"category_scores_gemma":[0.00025744602,0.00008279515,0.000085358035,0.00014776815,0.00033330568,0.000041763327,0.00037252277,0.00009622579,0.000029358764],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023049975,0.000069104375,0.012402208,0.00010817797,0.000076634344,0.0000024619058,0.0006132731,4.2950438e-7,0.97893554,0.00061191653,0.006770681,0.00038652014],"study_design_scores_gemma":[0.0010718934,0.00009685754,0.27724445,0.0006440223,0.000367459,0.000030228242,0.0014077027,0.0000046034925,0.6687639,0.0003010035,0.04973648,0.00033143908],"about_ca_topic_score_codex":0.00005197738,"about_ca_topic_score_gemma":0.00006343468,"teacher_disagreement_score":0.3101717,"about_ca_system_score_codex":0.000007436187,"about_ca_system_score_gemma":0.000057103025,"threshold_uncertainty_score":0.34137252},"labels":[],"label_agreement":null},{"id":"W4224219689","doi":"10.1080/21505594.2022.2065962","title":"The African swine fever virus protease pS273R inhibits DNA sensing cGAS-STING pathway by targeting IKKε","year":2022,"lang":"en","type":"article","venue":"Virulence","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Key Research and Development Program of China; Priority Academic Program Development of Jiangsu Higher Education Institutions; Jiangsu Agricultural Science and Technology Independent Innovation Fund; Natural Science Foundation of Beijing Municipality; National Natural Science Foundation of China","keywords":"African swine fever virus; Biology; Innate immune system; IRF3; DNA virus; RIG-I; Virology; TANK-binding kinase 1; IκB kinase; Stimulator of interferon genes; Virus; Interferon; Sting; RNA interference; Immune system; Cell biology; Signal transduction; Kinase; Gene; Genetics; NF-κB; Protein kinase A; RNA","score_opus":0.017476143228026163,"score_gpt":0.20596541138002394,"score_spread":0.1884892681519978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224219689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99248165,0.0006372342,0.000022948963,0.0046702283,0.00013521838,0.00036616455,0.00012882079,0.00013236314,0.0014253794],"genre_scores_gemma":[0.996943,0.000047623696,0.00005949536,0.0017347012,0.00023065775,0.000045389545,0.00009322112,0.000002359168,0.00084357173],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99801165,0.0004063479,0.00031030236,0.0004312103,0.0002926557,0.00054780603],"domain_scores_gemma":[0.99913913,0.00040395913,0.00019167448,0.00007940541,0.000035682424,0.00015015408],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0010793596,0.00017704091,0.0001698683,0.000008102805,0.001997298,0.000076103446,0.00038252916,0.000035622154,0.00047126313],"category_scores_gemma":[0.0006097145,0.00006883851,0.00009713782,0.0004142937,0.000109025976,0.00010734482,0.00054794305,0.00024924206,0.000069183625],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011767322,0.00009373673,0.0037199897,0.0000116849515,0.000022153408,0.000033570264,0.00014744831,0.00006830085,0.8394529,0.0006236485,0.0566471,0.099061795],"study_design_scores_gemma":[0.00024118258,0.00043608807,0.016368682,0.000032765176,0.000032092794,0.000009260721,0.003500448,0.00566302,0.0085514095,0.0017579134,0.96266514,0.00074201525],"about_ca_topic_score_codex":0.0005950602,"about_ca_topic_score_gemma":0.00006652892,"teacher_disagreement_score":0.906018,"about_ca_system_score_codex":0.00005037286,"about_ca_system_score_gemma":0.000012397081,"threshold_uncertainty_score":0.99930197},"labels":[],"label_agreement":null},{"id":"W4293586561","doi":"10.1080/21505594.2022.2116160","title":"Comparative transcriptomic analysis reveal genes involved in the pathogenicity increase of <i>Streptococcus suis</i> epidemic strains","year":2022,"lang":"en","type":"article","venue":"Virulence","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Natural Science Foundation of China","keywords":"Streptococcus suis; Biology; Pathogenicity; Microbiology; Transcriptome; Gene; Pathogenicity island; Virology; Virulence; Genetics; Gene expression","score_opus":0.049765364712477285,"score_gpt":0.3217279804888175,"score_spread":0.27196261577634023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293586561","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741936,0.0005645488,0.000110265435,0.00013979083,0.000040679664,0.00082730706,0.00031839754,0.000023016528,0.000556624],"genre_scores_gemma":[0.9989542,0.00005499967,0.00012102088,0.00027762016,0.000021382797,0.00041656426,0.00009459839,0.0000070200717,0.000052635303],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983142,0.00041945087,0.0004364958,0.00031682444,0.0002907211,0.00022230118],"domain_scores_gemma":[0.99911463,0.00017866332,0.00015176421,0.00042838312,0.000052355066,0.000074173615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004975692,0.00016102585,0.0005173256,0.00025928186,0.00015702158,0.0000071273053,0.0001870862,0.000038169776,0.0003257713],"category_scores_gemma":[0.00003556066,0.000118630334,0.00030072907,0.0015493066,0.00013171187,0.000057386776,0.00004365851,0.00028113334,0.0000058999526],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001234279,0.00081547437,0.9602648,0.000020983523,0.00044161605,0.000052209634,0.0011893993,0.0006013455,0.035693813,0.00012274,0.00012287444,0.00055132183],"study_design_scores_gemma":[0.0014477387,0.00041328408,0.9868902,0.000021037169,0.0010181166,0.000014639773,0.0019940159,0.0012393694,0.0064187683,0.00016398574,0.00024843053,0.00013040077],"about_ca_topic_score_codex":0.0025626537,"about_ca_topic_score_gemma":0.00086053007,"teacher_disagreement_score":0.029275045,"about_ca_system_score_codex":0.00012194433,"about_ca_system_score_gemma":0.000107383225,"threshold_uncertainty_score":0.48376048},"labels":[],"label_agreement":null},{"id":"W4317888512","doi":"10.1080/21505594.2023.2171691","title":"A new gene family (BAPs) of <i>Cotesia</i> bracovirus induces apoptosis of host hemocytes","year":2023,"lang":"en","type":"article","venue":"Virulence","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute on Governance","funders":"National Key Research and Development Program of China; National Outstanding Youth Science Fund Project of National Natural Science Foundation of China; National Natural Science Foundation of China; National Science Foundation","keywords":"Biology; Apoptosis; Gene; Cell biology; Ectopic expression; Immune system; Parasitism; Host (biology); Microbiology; Genetics","score_opus":0.03246859024901161,"score_gpt":0.2920564343049652,"score_spread":0.2595878440559536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4317888512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972451,0.0004185505,0.00029817023,0.00018728113,0.00018942813,0.00016583347,0.00002711638,0.00009734219,0.0013712125],"genre_scores_gemma":[0.997556,0.00061861845,0.0009388712,0.00018619778,0.000104267914,0.000007692368,0.000007448653,0.000018277253,0.0005626422],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901444,0.000022791435,0.00031370256,0.00020563883,0.00024403278,0.00019941812],"domain_scores_gemma":[0.99929434,0.00008406151,0.00012797325,0.00029676722,0.000088894114,0.00010794907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014248416,0.00012585464,0.00031566108,0.00022899012,0.000043619202,0.0000069758166,0.000112037385,0.00008779073,0.000090311034],"category_scores_gemma":[0.00010947487,0.00010809446,0.00011808491,0.0010742588,0.000081190774,0.0001040717,0.00005996522,0.00011944254,0.00011940279],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047919006,0.000066552544,0.008414884,0.00008537662,0.00004208601,0.0000036348567,0.00013553936,0.000014974877,0.9799888,0.00009433767,0.0025044398,0.008601432],"study_design_scores_gemma":[0.00046122036,0.00036852795,0.08342921,0.00014633632,0.00005753089,0.0000057220145,0.00011071566,0.00006965189,0.91417676,0.00007291265,0.0010017118,0.0000997222],"about_ca_topic_score_codex":0.0015041103,"about_ca_topic_score_gemma":0.000008057378,"teacher_disagreement_score":0.07501432,"about_ca_system_score_codex":0.000020626754,"about_ca_system_score_gemma":0.00013933721,"threshold_uncertainty_score":0.4407964},"labels":[],"label_agreement":null},{"id":"W4323807480","doi":"10.1080/21505594.2023.2187025","title":"Role of riboflavin biosynthesis gene duplication and transporter in <i>Aeromonas salmonicida</i> virulence in marine teleost fish","year":2023,"lang":"en","type":"article","venue":"Virulence","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Division of Ocean Sciences; Natural Sciences and Engineering Research Council of Canada; Agencia Nacional de Investigación y Desarrollo; Canada First Research Excellence Fund; Ocean Frontier Institute","keywords":"Riboflavin; Biology; Aeromonas salmonicida; Microbiology; Virulence; Gene; Flavin group; Genetics; Biochemistry; Bacteria; Enzyme","score_opus":0.0058677914382822185,"score_gpt":0.20603404160405742,"score_spread":0.2001662501657752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323807480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99807996,0.00069861335,0.000006498379,0.00028482595,0.000046057456,0.00029578104,0.000111120076,0.000053943844,0.00042317665],"genre_scores_gemma":[0.99806505,0.0011178822,0.000050480743,0.00014134191,0.000006783089,0.000040150982,0.0002292882,0.000013350194,0.0003356763],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886525,0.000067435976,0.00034314676,0.0003837414,0.00003601109,0.00030442537],"domain_scores_gemma":[0.99954736,0.00006306623,0.00009309967,0.0002552946,0.000022153497,0.00001900613],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023119496,0.0001653224,0.00025031963,0.0002393478,0.00004061407,0.00000757926,0.00023316231,0.00015146875,0.00013655589],"category_scores_gemma":[0.000026857575,0.00015887673,0.000046886453,0.0005334128,0.00015579716,0.00011785543,0.00010811937,0.00014460745,0.0001469782],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008606736,0.000106662315,0.0817589,0.000039515005,0.000019760408,0.0000098797655,0.000437556,0.0000044567596,0.9061384,0.00013181254,0.0001861401,0.011080835],"study_design_scores_gemma":[0.00056184665,0.00003352525,0.5824302,0.000073811505,0.000022954773,0.000003992476,0.0002462812,0.00001319582,0.41334406,0.00015918615,0.0029410773,0.00016989534],"about_ca_topic_score_codex":0.00069542736,"about_ca_topic_score_gemma":0.0010109268,"teacher_disagreement_score":0.50067127,"about_ca_system_score_codex":0.000024810319,"about_ca_system_score_gemma":0.000017725662,"threshold_uncertainty_score":0.64788055},"labels":[],"label_agreement":null},{"id":"W4387563259","doi":"10.1080/21505594.2023.2270252","title":"Amphibian <i>Hymenochirus boettgeri</i> as an experimental model for infection studies with the chytrid fungus <i>Batrachochytrium dendrobatidis</i>","year":2023,"lang":"en","type":"article","venue":"Virulence","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institute for Advanced Research; Gordon and Betty Moore Foundation","keywords":"Chytridiomycosis; Biology; Amphibian; Fungus; Virulence; Chytridiomycota; Model organism; Fungal disease; Mycology; Microbiology; Highly pathogenic; Ecology; Zoology; Immunology; Botany; Ascomycota; Genetics","score_opus":0.03396009867775113,"score_gpt":0.2996200832360524,"score_spread":0.26565998455830125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387563259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99539346,0.00041900828,0.0011664883,0.0005336982,0.00028950133,0.00069515634,0.000027701046,0.00024138938,0.0012336067],"genre_scores_gemma":[0.99571544,0.00029026094,0.00049006357,0.0012145308,0.00014366327,0.00033049856,0.0000190514,0.00003412466,0.0017623716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983733,0.000068256835,0.00020758029,0.0005862793,0.00026910176,0.00049543346],"domain_scores_gemma":[0.9992383,0.000086092274,0.00012052706,0.00041416578,0.000017699951,0.00012321913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003210854,0.00025122322,0.00021243098,0.00004205494,0.0005446132,0.000039692935,0.00029988942,0.000091364665,0.00008142804],"category_scores_gemma":[0.00003053675,0.00015879284,0.000078664125,0.00039165805,0.00059593236,0.00033614773,0.0001845554,0.00012938277,0.0005226622],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010868697,0.0006496466,0.022243453,0.00007322913,0.00021738489,0.00005491423,0.012483683,0.05179192,0.831738,0.0012349956,0.06263372,0.015792193],"study_design_scores_gemma":[0.0069250744,0.009359861,0.041970376,0.00020808671,0.0004133774,0.0004077157,0.010373245,0.17301193,0.68378323,0.005614023,0.06366162,0.0042714356],"about_ca_topic_score_codex":0.00010233347,"about_ca_topic_score_gemma":0.0004575639,"teacher_disagreement_score":0.14795473,"about_ca_system_score_codex":0.0001269139,"about_ca_system_score_gemma":0.00002718596,"threshold_uncertainty_score":0.67179394},"labels":[],"label_agreement":null},{"id":"W4403082905","doi":"10.1080/21505594.2024.2411540","title":"The roles of cell wall inhibition responsive protein CwrA in the pathogenicity of <i>Staphylococcus aureus</i>","year":2024,"lang":"en","type":"article","venue":"Virulence","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Staphylococcus aureus; Pathogenicity; Biology; Microbiology; Cell wall; Staphylococcal infections; Virulence; Bacterial protein; Pathogenicity island; Staphylococcus; Bacteria; Gene; Genetics","score_opus":0.010195516641526257,"score_gpt":0.25595276959288066,"score_spread":0.2457572529513544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403082905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924375,0.003519499,0.0001629304,0.0014187198,0.00005968213,0.0010699091,0.000076166485,0.00002779465,0.0012278232],"genre_scores_gemma":[0.9987458,0.0003782652,0.00025981193,0.00025509502,0.000045035635,0.000074474,0.0000043876416,0.000018671864,0.0002184625],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982858,0.00022528054,0.000499876,0.0002792359,0.00044325972,0.00026657686],"domain_scores_gemma":[0.99859416,0.0005180178,0.00015871278,0.00053072924,0.0001608927,0.00003748086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009993857,0.00016137559,0.0002551857,0.000117954216,0.000073704476,0.00002608273,0.0002656745,0.00010107484,0.000013653933],"category_scores_gemma":[0.0003176437,0.000093128394,0.0001547541,0.0006679346,0.00041239153,0.00008201996,0.000062838306,0.00036908395,0.000017534792],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005351722,0.00011076177,0.00035160565,0.00038654017,0.000012567494,0.000088055895,0.0015933672,0.000008073796,0.99314636,0.0014516436,0.0008986288,0.0014172266],"study_design_scores_gemma":[0.000413086,0.0002875352,0.0059079495,0.0014533199,0.000046460005,0.0000058257237,0.0011760697,0.00012308132,0.983137,0.0013520481,0.0059736255,0.00012397992],"about_ca_topic_score_codex":0.00007711649,"about_ca_topic_score_gemma":0.00022583726,"teacher_disagreement_score":0.010009338,"about_ca_system_score_codex":0.000056352237,"about_ca_system_score_gemma":0.00025708447,"threshold_uncertainty_score":0.37976655},"labels":[],"label_agreement":null},{"id":"W4407811556","doi":"10.1080/21505594.2025.2457967","title":"Human SLAM-adapted canine distemper virus can enter human peripheral blood mononuclear cells and replicate in mice expressing human SLAM and defective for STAT1 expression","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"State Key Laboratory of Veterinary Biotechnology; Heilongjiang Bayi Agricultural University; Dalhousie University; National Natural Science Foundation of China","keywords":"Peripheral blood mononuclear cell; Biology; Canine distemper; Virology; Virus; Immunology; Human blood; Peripheral blood; In vitro; Genetics","score_opus":0.015554837561313522,"score_gpt":0.298698122162529,"score_spread":0.28314328460121546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407811556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99751914,0.0007108901,0.00006081079,0.00015376616,0.000040543953,0.0007501606,0.00009749979,0.000066273176,0.00060093025],"genre_scores_gemma":[0.99767613,0.00004425851,0.00020706782,0.00057355035,0.000053865682,0.00013167076,0.000035799247,0.00003239943,0.00124526],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837685,0.00011197584,0.00035354597,0.0006815569,0.000114905844,0.0003611817],"domain_scores_gemma":[0.999316,0.000049582446,0.000113126014,0.00032588962,0.00005711734,0.00013831854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015415052,0.00026679982,0.00040392796,0.00015082023,0.00048779236,0.00004750705,0.00011538273,0.00015243169,0.000044204226],"category_scores_gemma":[0.000039892053,0.00024237903,0.00006676718,0.000107676795,0.00028143192,0.00015046033,0.00014273472,0.00025808788,0.0000010663374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033416777,0.00025645306,0.01889319,0.00023910083,0.000047302,0.000034720448,0.0012492031,0.0000047094763,0.9780457,0.00033338714,0.0002857911,0.00027626584],"study_design_scores_gemma":[0.008826789,0.0014877632,0.43475297,0.0018256456,0.000502941,0.000018369208,0.0008975815,0.00025619147,0.5483144,0.0017650337,0.0007401708,0.00061214826],"about_ca_topic_score_codex":0.00088791305,"about_ca_topic_score_gemma":0.00077575113,"teacher_disagreement_score":0.4297313,"about_ca_system_score_codex":0.00006661372,"about_ca_system_score_gemma":0.000046010555,"threshold_uncertainty_score":0.98839295},"labels":[],"label_agreement":null},{"id":"W4408224160","doi":"10.1080/21505594.2025.2474188","title":"Distinctive function of Tetraspanins: Implication in viral infections","year":2025,"lang":"en","type":"review","venue":"Virulence","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China","keywords":"Biology; Function (biology); Virology; Microbiology; Computational biology; Cell biology","score_opus":0.03605627777712373,"score_gpt":0.3866983643422472,"score_spread":0.35064208656512347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408224160","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00012308646,0.9916618,0.0009848826,0.000016554577,0.00011103716,0.0012511534,0.00003943445,0.00003565762,0.0057764123],"genre_scores_gemma":[0.00079265365,0.9975397,0.00007029336,0.000014240261,0.000046752877,0.00030152922,0.000119025965,0.00002007217,0.0010957163],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984851,0.00013723454,0.00054003816,0.00040094665,0.00023848329,0.00019819626],"domain_scores_gemma":[0.99880004,0.00032891612,0.00019050496,0.0004743177,0.00014087673,0.00006534195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020324392,0.00020689922,0.00086149684,0.000737861,0.000034907287,0.000008464045,0.00013797978,0.0002348562,0.00012633264],"category_scores_gemma":[0.00066441036,0.00017677568,0.00024703736,0.001302277,0.00008909466,0.000051619063,0.00010759046,0.0005509678,0.00010460358],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020327532,0.00021098589,0.00017381925,0.016373375,0.00003735199,0.0000044478384,0.0000093881135,4.7305298e-7,0.00017130637,0.0005171252,0.00013204502,0.98234934],"study_design_scores_gemma":[0.00035717708,0.0004698663,0.004212155,0.027024047,0.00055597245,0.000021055594,0.000013952859,0.000018344315,0.0000881038,0.00018558036,0.9668418,0.00021194242],"about_ca_topic_score_codex":0.0001096351,"about_ca_topic_score_gemma":0.000018915061,"teacher_disagreement_score":0.98213744,"about_ca_system_score_codex":0.00030776142,"about_ca_system_score_gemma":0.00066582183,"threshold_uncertainty_score":0.72087026},"labels":[],"label_agreement":null},{"id":"W4410312141","doi":"10.1080/21505594.2025.2503429","title":"A RACK1 family protein regulates pathogenicity of <i>Peronophythora litchii</i> by acting as a scaffold for MAPK signal modules","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Natural Science Foundation of China","keywords":"Biology; Scaffold protein; Pathogenicity; MAPK/ERK pathway; Cell biology; Scaffold; Signal transduction; SIGNAL (programming language); Signal transducing adaptor protein; Microbiology; Genetics; Engineering; Computer science","score_opus":0.010475865904742521,"score_gpt":0.21392658406742063,"score_spread":0.2034507181626781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410312141","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995895,0.0015765197,0.00020641023,0.0002890553,0.00005315802,0.0005207765,0.00073439244,0.00004899892,0.00067565107],"genre_scores_gemma":[0.9972456,0.000079656886,0.0012165885,0.00021006062,0.000058948146,0.00008599512,0.000035982794,0.0000012812021,0.0010658785],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987516,0.000059549704,0.00028920305,0.00039324453,0.0001704288,0.00033601545],"domain_scores_gemma":[0.9994047,0.000202207,0.00015863629,0.00008263457,0.00008740615,0.00006439276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029685753,0.00016730501,0.00025507875,0.000014079825,0.00022400421,0.000042642187,0.00032073425,0.000117336574,0.00002006946],"category_scores_gemma":[0.000065140426,0.00007178145,0.00013861105,0.00030646805,0.000080779624,0.00010845282,0.00007162392,0.000078252946,0.000005415967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012730356,0.00006985037,0.00021828465,0.000052207608,0.000012456447,0.0000017972475,0.000011574993,0.000003962673,0.9407084,0.00041838802,0.00047572964,0.057900064],"study_design_scores_gemma":[0.00020076676,0.00023833849,0.0120190075,0.00040372275,0.00002133332,0.0000014879557,0.00022452914,0.0005107491,0.97025865,0.0023924324,0.013467127,0.000261863],"about_ca_topic_score_codex":0.00009657186,"about_ca_topic_score_gemma":0.00005064279,"teacher_disagreement_score":0.057638198,"about_ca_system_score_codex":0.00001829348,"about_ca_system_score_gemma":0.000020536892,"threshold_uncertainty_score":0.29271626},"labels":[],"label_agreement":null},{"id":"W4411706437","doi":"10.1080/21505594.2025.2523882","title":"<i>Streptococcus suis</i> serotype 5: Emerging zoonotic threat with distinct genomic heterogeneity","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Key Research and Development Program of China; Shanxi Medical University","keywords":"Biology; Streptococcus suis; Serotype; Microbiology; Zoonosis; Zoonotic disease; Virology; Virulence; Genetics; Disease; Gene","score_opus":0.014700570424006432,"score_gpt":0.2948935047607347,"score_spread":0.2801929343367283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411706437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870957,0.00030228504,0.0009619928,0.00020057452,0.00015272059,0.0007065858,0.000012981945,0.00014388119,0.010423244],"genre_scores_gemma":[0.99781907,0.000038931168,0.00035625618,0.00021867071,0.00004855027,0.00016155881,0.000017181703,0.000017599385,0.0013222074],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99896044,0.00002296949,0.00020079609,0.00040211683,0.00012484244,0.00028881303],"domain_scores_gemma":[0.9992425,0.000047228412,0.00005672886,0.0004688989,0.00007339864,0.00011123374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054643708,0.00020887125,0.0002621978,0.000104203806,0.00018131545,0.000028701434,0.00008484954,0.00006134946,0.00018794727],"category_scores_gemma":[0.000024324585,0.00015372885,0.000090168,0.00037645918,0.00010108497,0.00007276904,0.000059835704,0.00014454896,0.0001605464],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011778655,0.0001987351,0.98779243,0.000059102076,0.0001697078,0.000056010453,0.000017868295,0.000025523595,0.003605828,0.0001651864,0.0001277151,0.007664088],"study_design_scores_gemma":[0.0015090154,0.00033727565,0.9760412,0.0002777141,0.00027816568,0.00003283743,0.000024576877,0.00018785895,0.018935772,0.00013439152,0.0020722582,0.00016892258],"about_ca_topic_score_codex":0.00024283341,"about_ca_topic_score_gemma":0.0001529037,"teacher_disagreement_score":0.015329943,"about_ca_system_score_codex":0.00014012346,"about_ca_system_score_gemma":0.00010603618,"threshold_uncertainty_score":0.6268881},"labels":[],"label_agreement":null},{"id":"W4412880455","doi":"10.1080/21505594.2025.2543058","title":"Molecular epidemiology of <i>Nakaseomyces glabrata</i> associated with vulvovaginal candidiasis revealed high genetic variability and the presence of novel genotypes in China","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Genotype; Candida glabrata; Epidemiology; Molecular epidemiology; Invasive candidiasis; Genetics; Vulvovaginal Candidiasis; Genetic variation; Microbiology; Gene; Antifungal; Candida albicans; Internal medicine; Medicine; Fluconazole","score_opus":0.006259871974048091,"score_gpt":0.22964665613435553,"score_spread":0.22338678416030744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412880455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930798,0.0028878709,0.003033486,0.00012906805,0.00002590809,0.00023269393,0.00049193535,0.0000032599953,0.00011600912],"genre_scores_gemma":[0.99832267,0.00051355205,0.00092366524,0.00014769503,0.000007504416,0.000025438414,0.000038650636,0.000004957641,0.000015885616],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99873793,0.00037870294,0.00031029904,0.00031327782,0.000081737126,0.00017803014],"domain_scores_gemma":[0.999075,0.00032126182,0.00017307504,0.00031936812,0.00007488772,0.000036393765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007028569,0.00012592916,0.0003191314,0.00003942436,0.000033760927,0.000003359617,0.00021508544,0.000095894444,0.0000023594198],"category_scores_gemma":[0.0016002381,0.000085246145,0.00004047792,0.00020677102,0.0004903592,0.0000044991066,0.00010684568,0.00007665538,7.5963165e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006889717,0.00015986498,0.55087715,0.00010065416,0.000099844394,0.0000053495073,0.000030571326,0.0011052608,0.44437042,0.0021658097,0.00002194705,0.0003741327],"study_design_scores_gemma":[0.0013049754,0.00014172733,0.9743823,0.00013785783,0.00007709547,0.0000043664563,0.000013690954,0.0008174769,0.022350464,0.0006453083,0.000016772718,0.000107964705],"about_ca_topic_score_codex":0.0005936428,"about_ca_topic_score_gemma":0.00014508155,"teacher_disagreement_score":0.42350513,"about_ca_system_score_codex":0.0000071187505,"about_ca_system_score_gemma":0.00012445667,"threshold_uncertainty_score":0.34762368},"labels":[],"label_agreement":null},{"id":"W4413141259","doi":"10.1080/21505594.2025.2546067","title":"Intrinsic and extrinsic factors affecting the evolution of virulence in the HIV-associated opportunistic human fungal pathogen <i>Cryptococcus neoformans</i>","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Natural Science Foundation of China","keywords":"Virulence; Biology; Pathogen; Opportunistic pathogen; Human pathogen; Fungal pathogen; Microbiology; Virology; Virulence factor; Human immunodeficiency virus (HIV); Immunology; Genetics; Gene","score_opus":0.018027930439899264,"score_gpt":0.2830894534991048,"score_spread":0.26506152305920555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413141259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99623746,0.00061069557,0.0002996807,0.00024049918,0.00008134737,0.0007476945,0.000048016165,0.00003263363,0.0017019989],"genre_scores_gemma":[0.9994147,0.00010919356,0.0000127114,0.00021734144,0.000024064562,0.00002001288,0.000018015044,0.000008113792,0.00017585418],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99835354,0.0002409861,0.00043005132,0.00031515263,0.00033498142,0.00032526572],"domain_scores_gemma":[0.9986861,0.0005141956,0.00017359536,0.00046846672,0.000106379586,0.000051301497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012160164,0.00018446892,0.00031960863,0.00011941005,0.00030399451,0.000025122308,0.00025758127,0.00010762223,0.000017110058],"category_scores_gemma":[0.0007811186,0.00011031835,0.00008794403,0.00066896155,0.0003488208,0.00012749826,0.00009383799,0.00041634394,0.000005142247],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008982828,0.00016553834,0.9311859,0.00017006275,0.0000252061,0.000023116698,0.0014057963,0.0000016266866,0.059524555,0.003376511,0.00014811382,0.0038837434],"study_design_scores_gemma":[0.00055615907,0.00015121608,0.9921265,0.00047197586,0.00008709761,0.000004255203,0.0048117707,0.000092557195,0.00081325154,0.0006420454,0.00013668381,0.000106447296],"about_ca_topic_score_codex":0.00033901026,"about_ca_topic_score_gemma":0.00044835408,"teacher_disagreement_score":0.06094064,"about_ca_system_score_codex":0.0002072908,"about_ca_system_score_gemma":0.00020328363,"threshold_uncertainty_score":0.44986516},"labels":[],"label_agreement":null},{"id":"W4413601951","doi":"10.1080/21505594.2025.2546066","title":"Hemocyanin controls <i>Vibrio</i> levels in hemolymph by modulating intracellular ROS via p38 MAPK","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; St. Boniface Hospital","funders":"Natural Science Foundation of Guangxi Province; Natural Science Foundation of Guangdong Province; National Natural Science Foundation of China","keywords":"Hemolymph; Hemocyanin; Biology; Cell biology; Reactive oxygen species; Gene knockdown; Marine invertebrates; Biochemistry; Ecology; Immunology; Gene","score_opus":0.0063427789466599695,"score_gpt":0.22195801573421686,"score_spread":0.2156152367875569,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413601951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9486512,0.009382278,0.03839972,0.00054029905,0.001029359,0.0006185134,0.0000641675,0.00012984092,0.0011846174],"genre_scores_gemma":[0.9916017,0.000048415794,0.00035174392,0.0011061103,0.000011919326,0.0000663536,0.00004152756,0.000027275024,0.0067449636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976275,0.00045702638,0.00059429556,0.0005612137,0.000059887363,0.0007000792],"domain_scores_gemma":[0.99896866,0.00027254,0.00015100687,0.00052526384,0.00005745934,0.000025094878],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00061828236,0.00031796267,0.0004993269,0.0002051239,0.0001984882,0.000037691283,0.0005086339,0.00041556562,0.0005910508],"category_scores_gemma":[0.00018772,0.00032724327,0.000096991585,0.00042332552,0.00017507854,0.00018775839,0.00019898752,0.0004514214,0.0011454769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016490005,0.000104660285,0.0004260851,0.000022733297,0.000056705805,0.000022258066,0.00013705052,0.00004700551,0.9803654,0.0024183064,0.00078716537,0.015447728],"study_design_scores_gemma":[0.0023593237,0.00007570604,0.00059325685,0.00016642589,0.000020438074,0.000057444937,0.00008187848,0.0024413439,0.98651105,0.0019733275,0.0054023145,0.00031746528],"about_ca_topic_score_codex":0.0003659223,"about_ca_topic_score_gemma":0.000019324747,"teacher_disagreement_score":0.04295048,"about_ca_system_score_codex":0.00015749289,"about_ca_system_score_gemma":0.00013460979,"threshold_uncertainty_score":0.999918},"labels":[],"label_agreement":null},{"id":"W4413707329","doi":"10.1080/21505594.2025.2543068","title":"<i>Mesorhizobium huakuii</i> 7653 R regulates the endophytic bacterial communities and disease resistance pathways to promote clubroot resistance in <i>Brassica napus</i>","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Fundamental Research Funds for the Central Universities; National Key Research and Development Program of China","keywords":"Clubroot; Biology; Brassica; Resistance (ecology); Mesorhizobium; Microbiology; Biotechnology; Botany; Bacteria; Agronomy; Symbiosis; Genetics","score_opus":0.010641690082559383,"score_gpt":0.20002965253646754,"score_spread":0.18938796245390815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413707329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98439026,0.005381498,0.0000030992676,0.0072176764,0.00016826716,0.00055403163,0.0005618883,0.000064481115,0.0016587988],"genre_scores_gemma":[0.9954682,0.0008808353,0.00012957734,0.0018026158,0.000110588444,0.00009900041,0.000055190754,0.0000024389635,0.0014515296],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983246,0.00021094669,0.00033053118,0.00040182238,0.0002646812,0.00046744462],"domain_scores_gemma":[0.9989448,0.0004081852,0.000085019325,0.0002750665,0.00006153589,0.00022538147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028036628,0.00025339363,0.00026311434,0.000029620578,0.0004385038,0.00019062785,0.00063674606,0.00007240278,0.000031788884],"category_scores_gemma":[0.00013858713,0.000111486304,0.000068922825,0.00063537905,0.00023554641,0.00013945547,0.0002202616,0.00017923983,0.000015340815],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004571628,0.00056842086,0.017592693,0.00059781707,0.000070564325,0.00016291306,0.0017955243,0.000019385829,0.89379096,0.015726624,0.049446456,0.01565699],"study_design_scores_gemma":[0.0008159455,0.00014021632,0.45211685,0.002403226,0.000083040795,0.0000022052145,0.0011086942,0.000041901247,0.022285966,0.039908934,0.4800699,0.0010231105],"about_ca_topic_score_codex":0.000058271056,"about_ca_topic_score_gemma":0.010966233,"teacher_disagreement_score":0.871505,"about_ca_system_score_codex":0.000042770276,"about_ca_system_score_gemma":0.000068047186,"threshold_uncertainty_score":0.6119416},"labels":[],"label_agreement":null},{"id":"W4414465551","doi":"10.1080/21505594.2025.2561830","title":"Isolation and comprehensive characterization of bovine parvovirus 1 from diarrheic calves in Northeast China: Insights into evolution and biology","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Key Research and Development Program of Heilongjiang","keywords":"Porcine parvovirus; Phylogenetic tree; Epitope; Coding region; Infectivity; Sequence analysis; Virus; Parvoviridae; Parvovirus; Recombination","score_opus":0.014192487481935289,"score_gpt":0.23599246474274163,"score_spread":0.22179997726080633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414465551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99813443,0.0011013937,0.00028108974,0.00019802173,0.000059926508,0.00012122851,0.000038552356,0.000017681374,0.000047670317],"genre_scores_gemma":[0.99892455,0.000895453,0.00004774179,0.000045052428,0.00002797505,0.000010923054,0.000042547137,3.7813157e-7,0.000005365579],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994595,0.00006471064,0.0001651162,0.00019912154,0.000031610245,0.00007992553],"domain_scores_gemma":[0.9997413,0.0001009354,0.00007088043,0.000027925476,0.000041862462,0.000017101018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003312253,0.00008286771,0.00014522827,0.00003348928,0.00012972807,0.000009874664,0.000043527398,0.000062002124,0.0000074210857],"category_scores_gemma":[0.000037950114,0.000039173312,0.000013660165,0.00027898597,0.00015460847,0.00012500586,0.00008063026,0.000056604735,0.0000013446902],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027792425,0.00001907057,0.3546639,0.0000056650156,0.000005455765,9.7576596e-8,0.000157707,5.460952e-7,0.6358428,0.0010451814,8.4942485e-7,0.00823093],"study_design_scores_gemma":[0.00008412001,0.00010846475,0.993817,0.00004122833,0.000006770861,2.1661535e-7,0.00008906027,0.0006344133,0.0016130313,0.0032695201,0.0002721953,0.00006401663],"about_ca_topic_score_codex":0.004884561,"about_ca_topic_score_gemma":0.0036481444,"teacher_disagreement_score":0.63915306,"about_ca_system_score_codex":0.000020233354,"about_ca_system_score_gemma":0.0000045226616,"threshold_uncertainty_score":0.7384027},"labels":[],"label_agreement":null},{"id":"W4414967953","doi":"10.1080/21505594.2025.2569630","title":"Manganese homeostasis modulates glucan and chitin unmasking in the opportunistic yeast <i>Candida albicans</i>","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; Institut de Cardiologie de Montréal; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Fondation Institut de Cardiologie de Montréal; Canada Foundation for Innovation","keywords":"Mutant; Cell wall; Virulence; Biogenesis; Yeast; Homeostasis; Chitin; Saccharomyces cerevisiae; Intracellular","score_opus":0.013587805376490082,"score_gpt":0.28548264206594415,"score_spread":0.2718948366894541,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414967953","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98981076,0.0012257717,0.0001486407,0.0020369468,0.000049749793,0.00026258064,0.000024200424,0.000023708657,0.0064176293],"genre_scores_gemma":[0.9968712,0.0004969078,0.000075544645,0.0017376179,0.00002758592,0.000015630214,0.0000100519965,0.0000065968084,0.0007588651],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99904877,0.0000615186,0.00020133631,0.00027757973,0.00018454759,0.00022626895],"domain_scores_gemma":[0.99941087,0.00012547537,0.000036461814,0.00033725455,0.000028687433,0.0000612306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036454175,0.00011951771,0.00020592334,0.00008345462,0.00009777751,0.000031592845,0.00012781174,0.000051659747,0.0000503245],"category_scores_gemma":[0.00019949263,0.0000829971,0.000040339433,0.0003460634,0.00019286474,0.000055667108,0.000041090734,0.00019430726,0.0000066303473],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032038317,0.00025250704,0.8916332,0.0004887301,0.000043792377,0.00035868122,0.001600116,0.0000038888434,0.011877749,0.007185637,0.0010541035,0.08518121],"study_design_scores_gemma":[0.00068852346,0.00008466173,0.9890017,0.0005997795,0.00006774872,0.000024992263,0.002275846,0.00046051084,0.0007867001,0.0012878276,0.004569822,0.00015191731],"about_ca_topic_score_codex":0.00033863657,"about_ca_topic_score_gemma":0.00042533953,"teacher_disagreement_score":0.097368464,"about_ca_system_score_codex":0.000038415285,"about_ca_system_score_gemma":0.000113310634,"threshold_uncertainty_score":0.33845237},"labels":[],"label_agreement":null},{"id":"W4416386262","doi":"10.1080/21505594.2025.2590844","title":"Harnessing gut microbiota to mitigate <i>Salmonella</i> Dublin: Lessons from <i>S</i> . Typhimurium","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Milk; Results Driven Agriculture Research","keywords":"Salmonella; Gut flora; Microbiome; Salmonella enterica; Pathogenicity island; Pathogenesis; Disease; Pathogenicity","score_opus":0.021504764226572957,"score_gpt":0.26994844373693966,"score_spread":0.2484436795103667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416386262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9680146,0.0008643507,0.000085618994,0.026030371,0.0007469555,0.00019936966,0.0001776864,0.00015609399,0.0037249404],"genre_scores_gemma":[0.98611087,0.00013068596,0.00031854192,0.011493189,0.00030263592,0.000024544719,0.00008121812,0.0000019579275,0.0015363528],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981158,0.00015878513,0.00036760644,0.0007097411,0.00011829999,0.00052979385],"domain_scores_gemma":[0.99897254,0.00049320015,0.00009538873,0.00018469799,0.000078955236,0.00017524093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025740912,0.0002485353,0.00035014612,0.000027964767,0.0002746679,0.00011044305,0.0006518599,0.0001970428,0.00033205288],"category_scores_gemma":[0.00013578999,0.00011306663,0.00013087688,0.0007071399,0.0001081611,0.000116509094,0.00026572682,0.00020396619,0.0006524982],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036883663,0.000049257254,0.008710139,0.000004756564,0.000015807,0.00000792831,0.00003498785,0.000009468129,0.94277155,0.0004258049,0.0176104,0.030323014],"study_design_scores_gemma":[0.00028522717,0.000106091786,0.54091537,0.00026496593,0.00005044925,0.000007806402,0.00020238293,0.00010051775,0.10304519,0.0060590617,0.348296,0.00066695485],"about_ca_topic_score_codex":0.0010902985,"about_ca_topic_score_gemma":0.00038832644,"teacher_disagreement_score":0.8397264,"about_ca_system_score_codex":0.000036065143,"about_ca_system_score_gemma":0.00002290231,"threshold_uncertainty_score":0.8386762},"labels":[],"label_agreement":null},{"id":"W4416759495","doi":"10.1080/21505594.2025.2595767","title":"Negative regulation of reassortant canine influenza virus replication and key site identification in porcine and ferret bronchial epithelial cell lines","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Jiangsu Association for Science and Technology; Jiangsu Agricultural Science and Technology Independent Innovation Fund; National Natural Science Foundation of China; Jiangsu Academy of Agricultural Sciences","keywords":"Reassortment; Virus; Viral replication; Influenza A virus; Reverse genetics; Cell culture; Genome; H5N1 genetic structure; Influenza A virus subtype H5N1","score_opus":0.033373228339465356,"score_gpt":0.35269339809873856,"score_spread":0.3193201697592732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416759495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996524,0.0015737682,0.00013206262,0.00052060065,0.000044161818,0.00063882064,0.00006493702,0.000024474264,0.00047720943],"genre_scores_gemma":[0.99758273,0.001129334,0.000502523,0.00022367027,0.00004896279,0.00004841215,0.000019531639,0.00000952102,0.00043532788],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99853,0.00007861575,0.0005281586,0.00042246655,0.00026292543,0.00017783846],"domain_scores_gemma":[0.9988609,0.0001500397,0.00020887064,0.0004119669,0.00031220674,0.000056021214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005828629,0.00013864077,0.00029504093,0.00031073627,0.000082188635,0.000018395063,0.00006315779,0.000084921216,0.000009245928],"category_scores_gemma":[0.0012537153,0.00012573507,0.000023069062,0.0004833742,0.0002270051,0.00018433288,0.00009879519,0.00016262947,0.000004152634],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00077730836,0.00007563818,0.15382771,0.0002711396,0.000021412608,0.0000023639063,0.0011227947,0.000034827724,0.8383833,0.00051731785,0.000086257816,0.0048798798],"study_design_scores_gemma":[0.0012756741,0.000099944424,0.7399886,0.00023012269,0.000037329835,0.0000021656065,0.00008173066,0.0018806196,0.25546542,0.00054008776,0.00032329076,0.000075018215],"about_ca_topic_score_codex":0.002098927,"about_ca_topic_score_gemma":0.00057070993,"teacher_disagreement_score":0.5861609,"about_ca_system_score_codex":0.00009933008,"about_ca_system_score_gemma":0.00010665651,"threshold_uncertainty_score":0.5127327},"labels":[],"label_agreement":null},{"id":"W4416905352","doi":"10.1080/21505594.2025.2589554","title":"Genome-scale CRISPR screen identifies host factors associated with bovine parainfluenza virus 3 infection","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Respiratory viral infections research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"National Key Research and Development Program of China","keywords":"Gene; Gene knockdown; Viral replication; Virus; Host factor; CRISPR; Pathogen; Host (biology)","score_opus":0.0486538936784215,"score_gpt":0.35581345307532863,"score_spread":0.30715955939690714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416905352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909865,0.0002778223,0.0017326853,0.00013853174,0.00013356113,0.0006256437,0.00004322297,0.00026590886,0.0057961065],"genre_scores_gemma":[0.9952811,0.00010530132,0.000027916734,0.00050320383,0.000058488535,0.00006602493,0.000039364495,0.000029416045,0.0038891907],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981114,0.00014464922,0.0003554142,0.0004533029,0.00049684366,0.0004383465],"domain_scores_gemma":[0.99867415,0.00014896624,0.00011023642,0.00052295194,0.0003852494,0.00015844738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040448524,0.00024264124,0.00035471236,0.0005399964,0.00033995276,0.000119597586,0.00015173898,0.00016970068,0.0003094141],"category_scores_gemma":[0.000714036,0.00019521551,0.000100230885,0.0014571238,0.00028352233,0.00036654662,0.000105579886,0.00047673463,0.00016316674],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000269452,0.0003390868,0.7516882,0.00009180807,0.00026065565,0.000026344404,0.00014310051,0.000085105086,0.24569081,0.000060251907,0.0007449878,0.00060021924],"study_design_scores_gemma":[0.0008614968,0.0005747666,0.92106354,0.00022480365,0.000099314864,0.0000028378001,0.000052780473,0.00011203801,0.07099107,0.000038731498,0.005791702,0.00018693232],"about_ca_topic_score_codex":0.001797708,"about_ca_topic_score_gemma":0.0014289165,"teacher_disagreement_score":0.17469972,"about_ca_system_score_codex":0.000339544,"about_ca_system_score_gemma":0.00023648315,"threshold_uncertainty_score":0.79606575},"labels":[],"label_agreement":null},{"id":"W4417447502","doi":"10.1080/21505594.2025.2605366","title":"Molecular characterization and pathogenicity of a novel Chinese porcine deltacoronavirus strain CH/HLJ/20 isolated from diarrheic piglets","year":2025,"lang":"en","type":"article","venue":"Virulence","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Science Foundation of Heilongjiang Province","keywords":"Phylogenetic tree; Genome; Mutant; Whole genome sequencing; Coronavirus; Virus; Gene; Peptide sequence; Viral evolution; Phylogenetics","score_opus":0.01202641190523538,"score_gpt":0.23484980082506068,"score_spread":0.2228233889198253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417447502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99569446,0.0003953725,0.0022308948,0.00030193388,0.00007077095,0.00018267457,0.0009147338,0.00005289414,0.00015628668],"genre_scores_gemma":[0.99920195,0.00020237795,0.00011897444,0.00025741284,0.00003557264,0.000015231381,0.00012128076,0.0000010442552,0.00004616953],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915427,0.000040546776,0.00023707318,0.0002983552,0.0001108016,0.00015896448],"domain_scores_gemma":[0.9996135,0.00009309957,0.00011224762,0.00006301976,0.0000777378,0.000040373914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009158715,0.00015295653,0.00021307789,0.000019755667,0.00015266906,0.000021689915,0.0001349529,0.00008206164,0.00006745523],"category_scores_gemma":[0.00009772717,0.000068771995,0.000053144522,0.00046435057,0.000102963335,0.00011663305,0.0001313977,0.000090898924,0.0000048431325],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036984136,0.00009682451,0.03602473,0.0000064761657,0.000024450783,0.0000019651168,0.000046577956,0.0000040328514,0.94405764,0.00017074612,0.0000029955713,0.019526556],"study_design_scores_gemma":[0.00020109396,0.00014434787,0.98170125,0.000054092194,0.00002604663,0.0000016242172,0.000032642853,0.0014504767,0.015698964,0.00025714535,0.0002880389,0.00014428963],"about_ca_topic_score_codex":0.0006819199,"about_ca_topic_score_gemma":0.00041531902,"teacher_disagreement_score":0.9456765,"about_ca_system_score_codex":0.000016278113,"about_ca_system_score_gemma":0.000008058093,"threshold_uncertainty_score":0.28044406},"labels":[],"label_agreement":null}]}