{"meta":{"query_hash":"055981eb8e3e","filters":{"venue":"mSphere"},"cohort_total":197,"direct_labels_cover":0,"predictions_cover":197,"exported":197,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/055981eb8e3e","api":"https://metacan.xera.ac/api/v1/cohort?venue=mSphere"},"results":[{"id":"W2271091798","doi":"10.1128/msphere.00034-15","title":"Characterization of Two Dinoflagellate Cold Shock Domain Proteins","year":2016,"lang":"en","type":"article","venue":"mSphere","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cold-shock domain; Dinoflagellate; Biology; Transcriptome; Transcription (linguistics); DNA; Cell biology; Heat shock protein; Transcription factor; Gene; Genetics; RNA; Biochemistry; Gene expression; Botany","score_opus":0.00659982685178143,"score_gpt":0.2057825474052535,"score_spread":0.19918272055347208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2271091798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929232,0.00003606872,0.005207668,0.000097030126,0.000052707044,0.00019530018,0.00008027814,0.0000068373147,0.0014009065],"genre_scores_gemma":[0.99678177,0.000030728253,0.00038026148,0.000061020062,0.0000851061,0.000008053276,0.000033838463,0.0000074526565,0.0026117552],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995728,0.000030338857,0.00008537041,0.00014399724,0.000060575534,0.00010688029],"domain_scores_gemma":[0.99969107,0.0000025495663,0.00005852001,0.00017706532,0.000036974845,0.000033839086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053429027,0.00006701918,0.00007192028,0.0000070960186,0.000034168388,0.0000048039137,0.00011279647,0.00006604426,0.00015005587],"category_scores_gemma":[0.000008272985,0.000051533,0.0000411502,0.000034651457,0.00004363512,0.000002983265,0.00006995314,0.000018778932,0.000029716331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043493015,0.000024174547,0.017870098,0.000012443049,0.000018191291,0.0000015536649,0.000015530335,4.3776762e-7,0.9803473,0.00041626452,0.00015113673,0.001099383],"study_design_scores_gemma":[0.0005194694,0.00010976542,0.010773627,0.000018735433,0.0000051233837,0.0000014287323,0.000004880501,5.970412e-7,0.9719443,0.00018505836,0.01635174,0.00008528101],"about_ca_topic_score_codex":0.000007728849,"about_ca_topic_score_gemma":0.000017330702,"teacher_disagreement_score":0.016200604,"about_ca_system_score_codex":0.0000062938952,"about_ca_system_score_gemma":0.000022755696,"threshold_uncertainty_score":0.21014547},"labels":[],"label_agreement":null},{"id":"W2273774884","doi":"10.1128/msphere.00014-15","title":"The Human Adenovirus Type 5 E4orf6/E1B55K E3 Ubiquitin Ligase Complex Can Mimic E1A Effects on E2F","year":2015,"lang":"en","type":"article","venue":"mSphere","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Else Kröner-Fresenius-Stiftung; Deutsche Forschungsgemeinschaft; Ministère du Développement Économique, de l’Innovation et de l’Exportation; Wilhelm Sander-Stiftung; Bar-Ilan University; Government of Canada; McGill University","keywords":"Ubiquitin ligase; Ubiquitin; Chemistry; Cell biology; Molecular biology; Biology; Genetics; Gene","score_opus":0.0437946836434685,"score_gpt":0.329248429925122,"score_spread":0.2854537462816535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2273774884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991429,0.0018447478,0.000003968025,0.0009672516,0.00021276607,0.0002897797,0.000019734298,0.00003416727,0.005198631],"genre_scores_gemma":[0.9925633,0.00009052846,0.00004824539,0.0013278327,0.0006148648,0.000042535143,0.00013248724,0.00006252473,0.005117667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830586,0.00026809282,0.00018753592,0.00039951017,0.0003283963,0.0005106243],"domain_scores_gemma":[0.99869365,0.000043421525,0.00006792032,0.0007904415,0.0001576972,0.0002468979],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003713024,0.00023420306,0.00017281358,0.000022854189,0.000291878,0.00007748898,0.00053941866,0.00015789633,0.00009942946],"category_scores_gemma":[0.0001270406,0.00017980837,0.00008694315,0.00014591958,0.0001459418,0.0000023123152,0.0001606446,0.00022889068,0.00026798336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013265585,0.00009522289,0.00070330745,0.000026602544,0.000097231554,0.000026938214,0.0000674645,0.00006468198,0.91226655,0.00015666461,0.07028547,0.014883324],"study_design_scores_gemma":[0.0015241589,0.0060140407,0.001116342,0.00002916262,0.000016917942,0.00001100088,0.00011905483,0.000031081454,0.8331947,0.00033201915,0.15729028,0.00032125667],"about_ca_topic_score_codex":0.00011065761,"about_ca_topic_score_gemma":0.0021230655,"teacher_disagreement_score":0.08700481,"about_ca_system_score_codex":0.00006401524,"about_ca_system_score_gemma":0.0002374494,"threshold_uncertainty_score":0.73323727},"labels":[],"label_agreement":null},{"id":"W2278045636","doi":"10.1128/msphere.00015-15","title":"The Human Adenovirus Type 5 E4orf6/E1B55K E3 Ubiquitin Ligase Complex Enhances E1A Functional Activity","year":2015,"lang":"en","type":"article","venue":"mSphere","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Else Kröner-Fresenius-Stiftung; Deutsche Forschungsgemeinschaft; Wilhelm Sander-Stiftung; Bar-Ilan University; Government of Canada; McGill University","keywords":"Ubiquitin ligase; Ubiquitin; DNA ligase; Cell biology; E2F; Adenoviridae; Function (biology); Chemistry; Biology; Molecular biology; DNA; Biochemistry; Cell cycle; Cell; Gene; Genetic enhancement","score_opus":0.07651860917429626,"score_gpt":0.3426550338365911,"score_spread":0.26613642466229487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2278045636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98887855,0.0016373121,0.000064189706,0.0007027341,0.00023544667,0.00014332986,0.000018122912,0.00002756278,0.008292771],"genre_scores_gemma":[0.99035585,0.00009759186,0.000052423617,0.00030790074,0.00070977525,0.00003208291,0.0000890957,0.00003201662,0.008323288],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986086,0.00018346003,0.00014965583,0.00034253547,0.00034131447,0.0003744605],"domain_scores_gemma":[0.9990123,0.000026297937,0.0000710727,0.0005013301,0.00022063746,0.00016837167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041613265,0.0001735792,0.00012953323,0.000014868419,0.00034730276,0.000077109806,0.00035105238,0.00012539171,0.0004223504],"category_scores_gemma":[0.00006653628,0.00013430424,0.00007707723,0.0001309753,0.00020846116,0.0000063580655,0.00016581042,0.00018513165,0.00023763157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014224971,0.00008784371,0.0005672719,0.00000680274,0.00007069258,0.0000036944973,0.000021256898,0.000050622995,0.94443923,0.00010541111,0.04403597,0.009188679],"study_design_scores_gemma":[0.0007543832,0.0018997589,0.002789457,0.0000064818314,0.000009880301,0.000008080264,0.00014896686,0.00003611356,0.81009686,0.00028743542,0.18374336,0.00021922535],"about_ca_topic_score_codex":0.00006470361,"about_ca_topic_score_gemma":0.0019295792,"teacher_disagreement_score":0.13970739,"about_ca_system_score_codex":0.000041128198,"about_ca_system_score_gemma":0.0003229599,"threshold_uncertainty_score":0.5476768},"labels":[],"label_agreement":null},{"id":"W2290003209","doi":"10.1128/msphere.00080-15","title":"The Zinc Finger Protein Mig1 Regulates Mitochondrial Function and Azole Drug Susceptibility in the Pathogenic Fungus Cryptococcus neoformans","year":2016,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Burroughs Wellcome Fund","keywords":"Cryptococcus neoformans; Biology; Mitochondrion; Saccharomyces cerevisiae; Microbiology; Antifungal drug; Cell biology; Genetics; Gene; Candida albicans","score_opus":0.009019558515006458,"score_gpt":0.22878400703640295,"score_spread":0.21976444852139648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2290003209","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99169594,0.0013060394,0.00004489066,0.0036270784,0.0002535974,0.0010484275,0.000005093044,0.00003941856,0.001979497],"genre_scores_gemma":[0.99460125,0.00007969275,0.00005355522,0.00012106301,0.00032531124,0.00022422076,0.000002042371,0.000011016017,0.004581846],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99904406,0.00010531371,0.00022185045,0.00021553262,0.0001585697,0.00025466474],"domain_scores_gemma":[0.99930096,0.00019179241,0.00005310828,0.00035087706,0.00006444011,0.00003882779],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036009063,0.00013418631,0.00015639224,0.000017264843,0.00038268138,0.00004008777,0.00006845736,0.000064083884,0.00015136522],"category_scores_gemma":[0.00013954665,0.000055148816,0.000076468335,0.00013850424,0.000166227,0.00008483329,0.00004892054,0.00015986279,0.000042740387],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030937006,0.0007710985,0.30554962,0.00030157538,0.00032047686,0.000043821983,0.005028043,0.000009455611,0.44672465,0.003052148,0.0896783,0.14542708],"study_design_scores_gemma":[0.0035621563,0.00077050255,0.87149346,0.00026323023,0.00011638738,0.000037013968,0.0027669962,0.00006332692,0.0031097508,0.004250123,0.11329742,0.00026962976],"about_ca_topic_score_codex":0.00014679218,"about_ca_topic_score_gemma":0.0027923484,"teacher_disagreement_score":0.56594384,"about_ca_system_score_codex":0.000053548487,"about_ca_system_score_gemma":0.000033266828,"threshold_uncertainty_score":0.29433146},"labels":[],"label_agreement":null},{"id":"W2338003926","doi":"10.1128/msphere.00075-15","title":"A Novel Glycolipid Biosurfactant Confers Grazing Resistance upon Pantoea ananatis BRT175 against the Social Amoeba Dictyostelium discoideum","year":2016,"lang":"en","type":"article","venue":"mSphere","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique; University of Regina","funders":"Canadian Institutes of Health Research; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Dictyostelium discoideum; Biology; Microbiology; Amoeba (genus); Glycolipid; Gene; Dictyostelium; Bacteria; Genetics; Biochemistry","score_opus":0.014935633918616747,"score_gpt":0.2650600782100709,"score_spread":0.25012444429145414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2338003926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98554933,0.00090303237,0.0010399692,0.006805467,0.00029575557,0.000391188,0.0003464779,0.00003723629,0.004631568],"genre_scores_gemma":[0.9958954,0.00061153044,0.00020193723,0.00032600889,0.00046029294,0.000057142162,0.000038297214,0.000041985775,0.0023674187],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99819887,0.00011238007,0.00027686794,0.00047914413,0.00032956622,0.00060317165],"domain_scores_gemma":[0.9991201,0.000050753326,0.00013607227,0.00043954872,0.00015657317,0.000096940115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002726869,0.0002599715,0.00023859614,0.000019781415,0.00049203285,0.00009662858,0.0004378079,0.00015414455,0.000036421785],"category_scores_gemma":[0.00025334064,0.00015025242,0.00014874643,0.00013461227,0.00035406966,0.000012750426,0.0003592928,0.00012570251,0.000023747167],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018755421,0.00004455863,0.0013695665,0.00002703379,0.00014519466,0.000006634276,0.00011826868,8.030421e-7,0.9828459,0.00022900364,0.010606697,0.0044187605],"study_design_scores_gemma":[0.004067141,0.00030008054,0.08689992,0.00023222099,0.000058834812,0.000009362734,0.0016459941,0.000019126186,0.2746206,0.00009953614,0.6310935,0.00095370837],"about_ca_topic_score_codex":0.00008116624,"about_ca_topic_score_gemma":0.0036509763,"teacher_disagreement_score":0.7082253,"about_ca_system_score_codex":0.000068639456,"about_ca_system_score_gemma":0.00015065337,"threshold_uncertainty_score":0.6127116},"labels":[],"label_agreement":null},{"id":"W2435156343","doi":"10.1128/msphere.00017-15","title":"Proteomic Analyses of Chlorhexidine Tolerance Mechanisms in Delftia acidovorans Biofilms","year":2016,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Environment and Climate Change Canada; University of Saskatchewan","funders":"National Research Council Canada","keywords":"Biofilm; Microbiology; Chlorhexidine; Biology; Computational biology; Bacteria; Medicine; Genetics; Dentistry","score_opus":0.017550124820714063,"score_gpt":0.2653570163779649,"score_spread":0.24780689155725083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2435156343","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978826,0.00018059464,0.0010617924,0.00018885733,0.00011690696,0.00015561585,0.000029152814,0.000009401546,0.0003750943],"genre_scores_gemma":[0.9959926,0.00008761329,0.0034034,0.00006801598,0.00008519869,0.000007728335,0.000015602203,0.000017972505,0.00032184174],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991511,0.000035997557,0.00024135034,0.00027467197,0.00007449654,0.00022239836],"domain_scores_gemma":[0.99953604,0.0000046901305,0.00009054394,0.00027866568,0.00004570336,0.000044355063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009586426,0.00013820585,0.00019497899,0.000026244354,0.00002285996,0.00000803737,0.00012719212,0.00014659925,0.0001464658],"category_scores_gemma":[0.000029145325,0.00009576491,0.000080184815,0.000107875196,0.000055414523,0.000005438444,0.000052679257,0.000037356975,0.000012155786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013241885,0.000031578486,0.0009675115,0.000013653331,0.000020290645,0.000002295211,0.000009769213,0.000007652918,0.99450034,0.000079505975,0.00008801417,0.004146997],"study_design_scores_gemma":[0.0006598443,0.00015919554,0.004018595,0.00006825412,0.00000927267,0.0000043574337,0.000014337356,0.000011377322,0.9938899,0.000058706868,0.0009562756,0.0001498812],"about_ca_topic_score_codex":0.00010733546,"about_ca_topic_score_gemma":0.00013315513,"teacher_disagreement_score":0.003997116,"about_ca_system_score_codex":0.0000096959575,"about_ca_system_score_gemma":0.00003733288,"threshold_uncertainty_score":0.39051798},"labels":[],"label_agreement":null},{"id":"W2510962849","doi":"10.1128/msphere.00199-16","title":"Extreme Dysbiosis of the Microbiome in Critical Illness","year":2016,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":422,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Southlake Regional Health Center; Kingston General Hospital; Clinical Evaluation Research Unit; Queen's University","funders":"","keywords":"Dysbiosis; Microbiome; Medicine; Intensive care medicine; Critical illness; Sepsis; Disease; Critically ill; Immunology; Bioinformatics; Internal medicine; Biology","score_opus":0.018153922254889533,"score_gpt":0.2764949230130806,"score_spread":0.25834100075819105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2510962849","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963434,0.00045314786,0.00011055042,0.0019413487,0.00016266656,0.00008277018,0.00003311617,0.0000031561822,0.00086986186],"genre_scores_gemma":[0.9984148,0.00005206663,0.00014787153,0.00026462163,0.00004755803,0.0000041192984,0.0000026269918,0.000009331118,0.0010569926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99942267,0.000046979007,0.0001445054,0.00016653088,0.000039310937,0.00018000545],"domain_scores_gemma":[0.99961954,0.000013446646,0.000028411047,0.00027265892,0.000035489775,0.000030441981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000079196296,0.000072105315,0.00008915207,0.000010037841,0.000031986223,0.0000034744041,0.00017115954,0.000103860795,0.00015437209],"category_scores_gemma":[0.000060720486,0.000040341376,0.000055873526,0.000072271134,0.00012687688,0.0000015528751,0.00008914132,0.000036385023,0.0000150792575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000161517,0.00003976405,0.011780216,0.00002507357,0.0000041171925,5.897295e-7,0.000022746795,1.2037962e-7,0.98291206,0.00017996813,0.0029039292,0.0021152599],"study_design_scores_gemma":[0.0005513736,0.000065762564,0.060237616,0.00010459414,0.000005939239,0.000012261878,0.00006795236,4.913222e-7,0.88039416,0.00012636356,0.058295827,0.00013764756],"about_ca_topic_score_codex":0.00003367685,"about_ca_topic_score_gemma":0.0002382371,"teacher_disagreement_score":0.102517895,"about_ca_system_score_codex":0.000013019829,"about_ca_system_score_gemma":0.00005679952,"threshold_uncertainty_score":0.16902661},"labels":[],"label_agreement":null},{"id":"W2550819759","doi":"10.1128/msphere.00288-16","title":"A Highly Conserved Residue in HIV-1 Nef Alpha Helix 2 Modulates Protein Expression","year":2016,"lang":"en","type":"article","venue":"mSphere","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Western University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; National Institute of Child Health and Human Development; Government of Canada","keywords":"Residue (chemistry); Human immunodeficiency virus (HIV); Biology; Valine; Alanine; Strain (injury); Genetics; Function (biology); Cell biology; Virology; Amino acid; Biochemistry","score_opus":0.012570072996733881,"score_gpt":0.23684483412323473,"score_spread":0.22427476112650085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2550819759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926658,0.0023955053,0.000048615577,0.0021308358,0.00006671168,0.0004907376,0.00010512056,0.00007167852,0.0020249416],"genre_scores_gemma":[0.9638717,0.00004614994,0.00026601073,0.000035592107,0.000015795693,0.00018020955,0.00006615801,0.000015673384,0.035502713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987484,0.0002569303,0.00019808137,0.0003038162,0.00004136639,0.00045138647],"domain_scores_gemma":[0.99946254,0.00010299948,0.00004422166,0.00031357416,0.000035760353,0.000040923187],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00012499029,0.0001514182,0.00020176462,0.00004669298,0.00008872046,0.000010935414,0.00017113208,0.00018794904,0.0033395994],"category_scores_gemma":[0.00008358369,0.000089457826,0.000051971714,0.0000851206,0.00012791285,0.000088173874,0.00009115129,0.00013874604,0.00746985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037608875,0.00018005897,0.021003734,0.0000151524855,0.00004231087,0.00008202666,0.000094599505,4.5437963e-7,0.9572331,0.00016378448,0.014650935,0.006157776],"study_design_scores_gemma":[0.00480044,0.0002666837,0.022032188,0.000361586,0.0000051326865,0.000014870079,0.00007858542,6.2454535e-7,0.9300223,0.0006674507,0.041578364,0.00017177615],"about_ca_topic_score_codex":0.00034602365,"about_ca_topic_score_gemma":0.00048409434,"teacher_disagreement_score":0.033477772,"about_ca_system_score_codex":0.00006607619,"about_ca_system_score_gemma":0.00007494071,"threshold_uncertainty_score":0.99757147},"labels":[],"label_agreement":null},{"id":"W2563295531","doi":"10.1128/msphere.00275-16","title":"A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses","year":2016,"lang":"en","type":"article","venue":"mSphere","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":221,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"Laboratory Directed Research and Development; Animal and Plant Health Inspection Service; Oak Ridge Institute for Science and Education; European Commission; National Institute of Allergy and Infectious Diseases; Agricultural Research Service","keywords":"Annotation; Nomenclature; Hemagglutinin (influenza); Biology; Phylogenetics; Virology; Gene nomenclature; Gene; Computational biology; Genetics; Virus; Taxonomy (biology); Zoology","score_opus":0.056427821314856935,"score_gpt":0.3659144924469142,"score_spread":0.3094866711320573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2563295531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904251,0.004314492,0.0012631434,0.00042438728,0.00010461868,0.0012132261,0.0011913254,0.00063590915,0.0004277833],"genre_scores_gemma":[0.9884478,0.00003169577,0.009027132,0.0015933178,0.00035033244,0.000347617,0.00003413262,0.000041710606,0.00012627657],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99836105,0.000060417304,0.00036298428,0.0004277867,0.0003544909,0.00043329722],"domain_scores_gemma":[0.9987903,0.0002690027,0.00012573914,0.00032204698,0.0003570288,0.00013584291],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018523347,0.0002637567,0.0004454868,0.000042394422,0.00016699338,0.00004177533,0.0000983105,0.00017461943,0.00005960295],"category_scores_gemma":[0.00044507853,0.00017030022,0.00009507422,0.00022570591,0.00013395915,0.00011806292,0.00006968667,0.00007868858,0.00006397052],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0074685607,0.00030669788,0.43182498,0.0023961707,0.0012300878,0.00014671567,0.00056731416,0.00006010768,0.4622446,0.00084156793,0.020485906,0.072427295],"study_design_scores_gemma":[0.04783139,0.002403782,0.64584345,0.0044554863,0.000864271,0.00006126952,0.0012912336,0.01597657,0.08627757,0.0006236463,0.19272828,0.0016430335],"about_ca_topic_score_codex":0.00014974167,"about_ca_topic_score_gemma":0.00006894344,"teacher_disagreement_score":0.37596706,"about_ca_system_score_codex":0.000281827,"about_ca_system_score_gemma":0.00019849207,"threshold_uncertainty_score":0.69446415},"labels":[],"label_agreement":null},{"id":"W2568858948","doi":"10.1128/msphere.00297-16","title":"Gut Microbiome of the Canadian Arctic Inuit","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Indigenous Studies and Ecology","field":"Health Professions","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Center for Northern Studies","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Microbiome; Arctic; Diversity (politics); Western diet; Abundance (ecology); Geography; Population; Biology; Ecology; Zoology; Environmental health; Obesity; Medicine; Bioinformatics","score_opus":0.03861700072282554,"score_gpt":0.3545912574879345,"score_spread":0.315974256765109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2568858948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86727977,0.000086827706,2.4305268e-7,0.007521434,0.0015879753,0.00047746603,0.00004679385,0.000007444924,0.12299207],"genre_scores_gemma":[0.98079246,0.000007860781,0.000028448836,0.0010728646,0.00012362472,0.000021383494,8.630597e-7,0.000008538965,0.017943922],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991133,0.00006330868,0.0001483788,0.000084962965,0.000042011623,0.0005480384],"domain_scores_gemma":[0.99911267,0.00003550255,0.00015974349,0.0004983297,0.00013551796,0.000058256963],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002038151,0.000056290413,0.00012693899,0.0000103708335,0.009530061,0.0000059982763,0.00036290503,0.00012372698,0.0023681982],"category_scores_gemma":[0.00013760956,0.00003726019,0.00003982687,0.000025935897,0.000111754205,0.000020041598,0.00020670946,0.00023196074,0.00048252306],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000079539595,0.000019289962,0.88658875,0.00022244453,0.000061118066,0.0000066324774,0.057946432,0.0000013707277,0.00037164977,0.0028748207,0.050642803,0.0012567248],"study_design_scores_gemma":[0.00022040316,0.00002096907,0.8248696,0.000058528196,0.000012315696,0.0000011566322,0.0056996895,0.0000014013582,0.000009695799,0.0004704664,0.16857378,0.00006203062],"about_ca_topic_score_codex":0.8627593,"about_ca_topic_score_gemma":0.99945194,"teacher_disagreement_score":0.13669267,"about_ca_system_score_codex":0.00050021696,"about_ca_system_score_gemma":0.0012133875,"threshold_uncertainty_score":0.9985438},"labels":[],"label_agreement":null},{"id":"W2576825974","doi":"10.1128/msphere.00357-16","title":"The Case for Adopting the “Species Complex” Nomenclature for the Etiologic Agents of Cryptococcosis","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":415,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Biotechnology and Biological Sciences Research Council; Medical Research Council; National Institutes of Health","keywords":"Cryptococcus neoformans; Biology; Clade; Cryptococcosis; Cryptococcus gattii; Species complex; Genetic diversity; Phylogenetic tree; Confusion; Nomenclature; Population; Cryptococcus; Evolutionary biology; Genotype; Zoology; Taxonomy (biology); Genetics; Microbiology; Gene; Medicine","score_opus":0.16003238890160987,"score_gpt":0.37339836813961597,"score_spread":0.2133659792380061,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2576825974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8677674,0.00829282,0.005864608,0.06849321,0.0018452334,0.008632197,0.00036333312,0.00009112833,0.03865005],"genre_scores_gemma":[0.99504626,0.00019424815,0.0009553429,0.00027169296,0.00028075464,0.00039846875,0.0000030058038,0.000008601082,0.0028416358],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.999533,0.000016733806,0.00014137595,0.0000970259,0.000056017903,0.00015587152],"domain_scores_gemma":[0.998354,0.0008879942,0.00014467874,0.0004371085,0.00015981858,0.000016392509],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0003009356,0.000084630534,0.00014955828,0.000004366915,0.0031464524,0.00006025945,0.00016903499,0.000042409865,0.000054023094],"category_scores_gemma":[0.00054822065,0.00003127953,0.00014828763,0.000028321374,0.00028049402,0.000022378117,0.00007575276,0.0001034831,0.0000018408897],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010481549,0.00039305238,0.16127379,0.0008502844,0.0025958577,0.00005737762,0.005484075,0.0001768883,0.0045314543,0.074072555,0.65386635,0.095650166],"study_design_scores_gemma":[0.0010397682,0.00044426785,0.22097994,0.000060036717,0.00026635945,0.000055157696,0.00696066,0.001273712,0.00018311679,0.0013413373,0.7673006,0.00009503064],"about_ca_topic_score_codex":0.00008509895,"about_ca_topic_score_gemma":0.00050991465,"teacher_disagreement_score":0.12727883,"about_ca_system_score_codex":0.000017490134,"about_ca_system_score_gemma":0.000013716597,"threshold_uncertainty_score":0.9981513},"labels":[],"label_agreement":null},{"id":"W2577803396","doi":"10.1128/msphere.00340-16","title":"Optimized CRISPR-Cas9 Genome Editing for <i>Leishmania</i> and Its Use To Target a Multigene Family, Induce Chromosomal Translocation, and Study DNA Break Repair Mechanisms","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biology; CRISPR; Genome editing; Cas9; Genetics; Gene; Guide RNA; Recombinase; Homologous recombination","score_opus":0.01774999224538712,"score_gpt":0.2934497100654763,"score_spread":0.2756997178200892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2577803396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94256645,0.0011456416,0.05487424,0.00009937938,0.00017144809,0.0009840684,0.00008113397,0.000035306366,0.000042325417],"genre_scores_gemma":[0.9674834,0.00009250866,0.03152858,0.0001492566,0.00029156505,0.00015326151,0.000039803886,0.000045381068,0.00021625393],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998857,0.000024167673,0.00022222729,0.00052072364,0.00009792321,0.00027796635],"domain_scores_gemma":[0.9992096,0.000014864399,0.00007046269,0.00042470524,0.00012408491,0.00015631098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002033236,0.00021656927,0.00022507088,0.000019645664,0.00033828718,0.00013581022,0.000176338,0.0001300741,0.0000074242002],"category_scores_gemma":[0.00014987729,0.00022650731,0.000060218543,0.000027368516,0.00002247781,0.00001738235,0.00014213023,0.00006663568,0.0000013770762],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000913826,0.00008130658,0.00038164933,0.000053040476,0.000098018994,0.000009066075,0.0004183992,0.00090066175,0.9966689,0.000016527494,0.0002621402,0.0010189521],"study_design_scores_gemma":[0.007838429,0.0019193754,0.05895419,0.00008507027,0.00018952614,0.00008622566,0.0021780822,0.0076571438,0.89751387,0.000063700594,0.022283569,0.0012308261],"about_ca_topic_score_codex":0.00006793137,"about_ca_topic_score_gemma":0.00012838456,"teacher_disagreement_score":0.099154994,"about_ca_system_score_codex":0.000008530268,"about_ca_system_score_gemma":0.000027131064,"threshold_uncertainty_score":0.92367005},"labels":[],"label_agreement":null},{"id":"W2583467547","doi":"10.1128/msphere.00019-17","title":"Global Population Genetic Analysis of Aspergillus fumigatus","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Aspergillus fumigatus; Biology; Microsatellite; Genetic diversity; Gene flow; Genetic variation; Population; Genetics; Fungal pathogen; Gene; Evolutionary biology; Microbiology; Allele; Medicine","score_opus":0.016773594313583464,"score_gpt":0.322711136491206,"score_spread":0.30593754217762253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2583467547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9854085,0.00043654707,0.00026213803,0.0001066763,0.000057825662,0.00008330581,0.000019448808,0.000014726134,0.013610857],"genre_scores_gemma":[0.9981329,0.00003118014,0.0008304639,0.00003921844,0.000040070314,0.0000012576047,0.000018682174,0.000004091496,0.0009021372],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993197,0.000014212769,0.00018028186,0.00017168718,0.00019554619,0.000118579286],"domain_scores_gemma":[0.999055,0.000008013906,0.000116436706,0.0006745652,0.00007808574,0.00006784661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000067210676,0.00007017596,0.00029137288,0.000017904333,0.00010139939,0.000015329248,0.00009537899,0.000066949564,0.0005587761],"category_scores_gemma":[0.00013607416,0.00005844787,0.00018203126,0.0001523984,0.000067579436,0.000044433964,0.000028302979,0.000038548096,0.00001357561],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008455013,0.00004063111,0.98116237,0.00003153713,0.0002704523,0.0000116150895,0.000017851029,0.00004710799,0.0002917762,0.00015434339,0.00010639232,0.017781375],"study_design_scores_gemma":[0.0002707207,0.000048485937,0.99757135,0.000024540965,0.0008464114,0.0000010362191,0.00004508217,0.00067717646,0.00006537284,0.00017377238,0.00022382374,0.00005222607],"about_ca_topic_score_codex":0.0013574427,"about_ca_topic_score_gemma":0.0049916003,"teacher_disagreement_score":0.017729148,"about_ca_system_score_codex":0.000058913654,"about_ca_system_score_gemma":0.000029218347,"threshold_uncertainty_score":0.61182064},"labels":[],"label_agreement":null},{"id":"W2584884843","doi":"10.1128/msphere.00387-16","title":"Effects of Organic Amendments on Microbiota Associated with the Culex nigripalpus Mosquito Vector of the Saint Louis Encephalitis and West Nile Viruses","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Florida Department of Agriculture and Consumer Services; University of Florida","keywords":"Biology; Culex; Vector (molecular biology); Ecology; Mosquito control; Host (biology); Microbiome; Wetland; Larva; Immunology","score_opus":0.010601749173732139,"score_gpt":0.2024037181536783,"score_spread":0.19180196897994617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2584884843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99876577,0.00010035627,2.7281361e-8,0.00048285953,0.00014327587,0.0002301001,0.000058375685,0.000008096727,0.0002111383],"genre_scores_gemma":[0.999525,0.000020934953,0.0000018930368,0.000217757,0.000060811617,0.0000071850077,0.000002699453,0.0000011918168,0.0001625364],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99929124,0.000101438505,0.00013507952,0.00016492578,0.00014833582,0.00015896035],"domain_scores_gemma":[0.9993103,0.00018627723,0.00030163844,0.00011827557,0.000056137542,0.000027383603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116112875,0.00011879226,0.0001812573,0.0000020538328,0.00041557636,0.00010596452,0.0004331391,0.000066725566,0.00023717294],"category_scores_gemma":[0.00010670623,0.000030356097,0.000052640567,0.00008347108,0.00028709948,0.00005592667,0.000108946944,0.00007176758,0.0000034030818],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002040487,0.00007851654,0.038031973,0.000012879226,0.000030459732,7.509311e-7,0.000111758585,2.0392315e-7,0.9604363,0.00005834261,0.00026867012,0.0009497403],"study_design_scores_gemma":[0.00012977161,0.00031837096,0.7032241,0.0001509915,0.00001930756,7.400433e-7,0.00008655996,3.9171556e-7,0.29538885,0.000017276147,0.00059771806,0.00006591046],"about_ca_topic_score_codex":0.0019506696,"about_ca_topic_score_gemma":0.005230221,"teacher_disagreement_score":0.6651921,"about_ca_system_score_codex":0.000021597429,"about_ca_system_score_gemma":0.000008020467,"threshold_uncertainty_score":0.31963193},"labels":[],"label_agreement":null},{"id":"W2592596297","doi":"10.1128/msphere.00056-17","title":"Staurosporine Induces Filamentation in the Human Fungal Pathogen Candida albicans via Signaling through Cyr1 and Protein Kinase A","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Staurosporine; Filamentation; Candida albicans; Virulence; Biology; Corpus albicans; Phenotypic switching; Microbiology; Fungal protein; Pathogen; Virulence factor; Cell biology; Signal transduction; Yeast; Protein kinase C; Phenotype; Genetics; Gene; Saccharomyces cerevisiae","score_opus":0.03696148957810639,"score_gpt":0.32684641459213,"score_spread":0.2898849250140236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592596297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99452406,0.00030315688,0.000060885824,0.00062653335,0.000024856932,0.0006463029,0.000015488726,0.000015021208,0.003783718],"genre_scores_gemma":[0.9983277,0.000013288476,0.00028879903,0.00020659436,0.000107591295,0.00004627807,0.000019215333,0.000011865525,0.0009786767],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999035,0.00006398735,0.00020312569,0.00025736337,0.00023921437,0.00020132062],"domain_scores_gemma":[0.99934304,0.000026127582,0.00011563511,0.00042576418,0.00004172709,0.000047705926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003293902,0.00012596161,0.00019646293,0.0000112460175,0.0003801469,0.00008213689,0.0001338327,0.00006629367,0.00021813919],"category_scores_gemma":[0.00009038691,0.000085863125,0.000040070507,0.00005151169,0.00013769507,0.00018818238,0.000036586367,0.00021472048,0.0000046208047],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016352287,0.00014665976,0.5231898,0.00014950652,0.000018934885,0.0002593644,0.0029111456,9.037195e-7,0.4675681,0.00029516386,0.00014699654,0.0051498953],"study_design_scores_gemma":[0.0013765221,0.00029959856,0.9771703,0.0002712029,0.00004301531,0.000010154987,0.0037218484,0.000015832553,0.014892546,0.0011562814,0.0008913136,0.00015136672],"about_ca_topic_score_codex":0.0022877513,"about_ca_topic_score_gemma":0.004300296,"teacher_disagreement_score":0.45398054,"about_ca_system_score_codex":0.000048355178,"about_ca_system_score_gemma":0.00005359964,"threshold_uncertainty_score":0.35013965},"labels":[],"label_agreement":null},{"id":"W2606931784","doi":"10.1128/msphere.00120-17","title":"Discovery of a Novel Antifungal Agent in the Pathogen Box","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft; University of British Columbia; Medicines for Malaria Venture; Government of Canada","keywords":"Cryptococcus neoformans; Candida albicans; Antifungal; Human pathogen; Pathogen; Fungal pathogen; Potency; Microbiology; Biology; Cryptococcus; Human immunodeficiency virus (HIV); Antifungal drugs; Virology; Bacteria; In vitro","score_opus":0.043775018107480156,"score_gpt":0.3190852887898737,"score_spread":0.27531027068239355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606931784","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9765654,0.0003541208,0.00026200965,0.00056141336,0.00007676932,0.00022542136,0.000026598836,0.000005915332,0.021922305],"genre_scores_gemma":[0.9970413,0.000049882332,0.00025214336,0.00018874597,0.00007006854,0.0000060904295,0.000005076676,0.0000074025493,0.002379299],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992289,0.000023875647,0.00018668304,0.00016937006,0.000234369,0.00015682525],"domain_scores_gemma":[0.99899703,0.000040013892,0.00009611075,0.0008066492,0.000034773497,0.000025401432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033882912,0.00008370467,0.00020791174,0.000010153326,0.000095146075,0.000038622486,0.0002323596,0.000054831315,0.0000611942],"category_scores_gemma":[0.0002375916,0.00005052771,0.00010375746,0.00004144834,0.00013905749,0.00012561327,0.00004973671,0.00013874986,0.000011786985],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021902213,0.0004557692,0.90161026,0.00013132044,0.000019048151,0.000078952784,0.0004574279,9.3395226e-7,0.092373714,0.0006511941,0.0010970052,0.0029053465],"study_design_scores_gemma":[0.0008539379,0.00008539798,0.99473906,0.00016164602,0.000025737247,0.00000658021,0.00079840387,0.000030469246,0.0020518801,0.00007138835,0.001116447,0.00005903559],"about_ca_topic_score_codex":0.0001769669,"about_ca_topic_score_gemma":0.00083549763,"teacher_disagreement_score":0.093128815,"about_ca_system_score_codex":0.000021633534,"about_ca_system_score_gemma":0.000073449904,"threshold_uncertainty_score":0.20604603},"labels":[],"label_agreement":null},{"id":"W2618451207","doi":"10.1128/msphere.00183-17","title":"Toxoplasma gondii MAF1b Binds the Host Cell MIB Complex To Mediate Mitochondrial Association","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; National Science Foundation","keywords":"Toxoplasma gondii; Vacuole; Biology; Mitochondrion; Cell biology; Intracellular parasite; Host (biology); Intracellular; Immune system; Host–pathogen interaction; Cytoplasm; Genetics; Antibody; Gene","score_opus":0.022264570641753762,"score_gpt":0.27885233388112896,"score_spread":0.2565877632393752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2618451207","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9350419,0.00070425955,0.000045040764,0.017423969,0.0042799236,0.0009509359,0.00038925622,0.0001383839,0.0410263],"genre_scores_gemma":[0.8867621,0.00008428978,0.00022391032,0.00042611625,0.00034949588,0.00012797787,0.00011098822,0.000032862146,0.11188225],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99815017,0.000281237,0.0002771119,0.00038484074,0.0001445886,0.00076205534],"domain_scores_gemma":[0.9981745,0.00045145373,0.00028906018,0.00086111884,0.00016475252,0.00005911335],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00036877574,0.00024787642,0.00034653634,0.00004564491,0.0017776717,0.00017896727,0.0010635692,0.00031871864,0.0018668352],"category_scores_gemma":[0.0010787674,0.0001758496,0.00013864483,0.00009152339,0.00024711515,0.00013401333,0.00065409986,0.0005406045,0.008096699],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019176974,0.00009343794,0.018479329,0.0000177111,0.0002590371,0.000010595165,0.0012012676,0.000004530197,0.5547229,0.00013284496,0.42325774,0.001628867],"study_design_scores_gemma":[0.0020559304,0.00021138854,0.14776713,0.000018184346,0.000047070087,0.0000071954814,0.00053996756,0.0000043105933,0.06577798,0.00007123176,0.78322345,0.00027618094],"about_ca_topic_score_codex":0.00034619003,"about_ca_topic_score_gemma":0.002097741,"teacher_disagreement_score":0.4889449,"about_ca_system_score_codex":0.0002011793,"about_ca_system_score_gemma":0.00008376158,"threshold_uncertainty_score":0.99952185},"labels":[],"label_agreement":null},{"id":"W2739165387","doi":"10.1128/msphere.00158-17","title":"Evolution of Cost-Free Resistance under Fluctuating Drug Selection in Pseudomonas aeruginosa","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Ontario Genomics; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Antibiotics; Pseudomonas aeruginosa; Antibiotic resistance; Biology; Experimental evolution; Ciprofloxacin; Drug resistance; Microbiology; Genetics; Bacteria; Gene","score_opus":0.007612953332857272,"score_gpt":0.2540677615057041,"score_spread":0.24645480817284682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2739165387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9796142,0.00067280023,0.010158984,0.0002975723,0.000118910066,0.00017666534,0.000013482007,0.000010001207,0.0089374045],"genre_scores_gemma":[0.99193805,0.00005066655,0.0030028105,0.000034132045,0.00008377832,0.000012066932,0.000016971833,0.000012224581,0.004849271],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99926436,0.000042618773,0.00018622019,0.00022711992,0.00011242876,0.00016724117],"domain_scores_gemma":[0.9992609,0.000006384963,0.00015954998,0.0004534527,0.00008490685,0.00003478002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016580005,0.00009570599,0.00010411074,0.000019342753,0.00013821921,0.000019756906,0.00028569688,0.0001036598,0.000025958157],"category_scores_gemma":[0.00017883498,0.00010392757,0.00004691639,0.000051324296,0.0000885879,0.0000059523804,0.00011508203,0.000078251134,0.000004661413],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023169187,0.00014040733,0.14086272,0.00009553553,0.000044385837,0.0000021545322,0.00012678884,0.009741987,0.82543373,0.00631559,0.014344259,0.0026607658],"study_design_scores_gemma":[0.0031883114,0.00012801179,0.9003028,0.00013950061,0.000029241855,0.000011348034,0.0007100777,0.009517025,0.0652353,0.008708526,0.011471291,0.000558562],"about_ca_topic_score_codex":0.00021388981,"about_ca_topic_score_gemma":0.015303607,"teacher_disagreement_score":0.7601984,"about_ca_system_score_codex":0.000058203528,"about_ca_system_score_gemma":0.00008781762,"threshold_uncertainty_score":0.8539772},"labels":[],"label_agreement":null},{"id":"W2741508359","doi":"10.1128/msphere.00246-17","title":"Characterization of <i>Legionella</i> Species from Watersheds in British Columbia, Canada","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia; Simon Fraser University","funders":"Genome British Columbia; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Genome Canada","keywords":"Legionella; Legionnaires' disease; Outbreak; Ecology; Biology; Geography; Legionella pneumophila; Virology; Bacteria","score_opus":0.00937904284137455,"score_gpt":0.2086547348067159,"score_spread":0.19927569196534134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2741508359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99735147,0.00006803324,0.0000121031,0.00018952384,0.00014068802,0.00008402474,0.00011180612,0.0000020043312,0.0020403746],"genre_scores_gemma":[0.99116534,0.00018658265,0.000019477755,0.00009198534,0.00016374972,0.0000054608868,0.000271954,0.000010611346,0.008084857],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99937475,0.000019593244,0.00013415574,0.00018671236,0.00012529817,0.00015948081],"domain_scores_gemma":[0.99950093,0.0000034340721,0.00007339112,0.0003290216,0.000049893646,0.00004331157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000046821562,0.000050257724,0.000110016925,0.000003950402,0.0001035943,0.00013081933,0.00026129637,0.00007358263,0.000113779104],"category_scores_gemma":[0.000027517162,0.00007471764,0.000026862857,0.000020454241,0.00007686039,0.0000059024255,0.0001102681,0.000054992375,0.0000019357183],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007845347,0.000016508726,0.410091,0.000008707057,0.0000093255585,0.000018976301,0.000011424093,7.260575e-7,0.5852306,6.613294e-7,0.0034737114,0.0011305371],"study_design_scores_gemma":[0.00040605242,0.000026384514,0.7824777,0.000033460008,0.0000026826735,0.000002512132,0.00007752488,0.000009153204,0.16548659,0.000016645723,0.05135478,0.00010655868],"about_ca_topic_score_codex":0.93170816,"about_ca_topic_score_gemma":0.99430877,"teacher_disagreement_score":0.41974398,"about_ca_system_score_codex":0.000018444873,"about_ca_system_score_gemma":0.00018440309,"threshold_uncertainty_score":0.30468968},"labels":[],"label_agreement":null},{"id":"W2749498758","doi":"10.1128/msphere.00243-17","title":"Butyrate Supplementation at High Concentrations Alters Enteric Bacterial Communities and Reduces Intestinal Inflammation in Mice Infected with Citrobacter rodentium","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Health Canada; Alberta Innovates; Alberta Innovates Bio Solutions; Alberta Innovates - Health Solutions; General Mills","keywords":"Butyrate; Citrobacter rodentium; Microbiology; Biology; Inflammation; Gut flora; Lachnospiraceae; Citrobacter; Immunology; Bacteria; Food science; Enterobacteriaceae; Firmicutes; Biochemistry; Fermentation; Escherichia coli","score_opus":0.01051871324291591,"score_gpt":0.25166436914474966,"score_spread":0.24114565590183373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2749498758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990831,0.000023170905,0.00007221323,0.00030298656,0.00011024426,0.00019059844,0.000047529385,0.0000064203286,0.00016373945],"genre_scores_gemma":[0.99764925,0.00009559553,0.00048564788,0.000047244896,0.0001029563,0.000015512436,0.0013119706,0.000009687801,0.00028210328],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994504,0.00006971235,0.00015527195,0.00013116795,0.000041587336,0.00015184525],"domain_scores_gemma":[0.99958825,0.0000069001926,0.00014514239,0.00016969079,0.000054147462,0.000035879824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065616514,0.00010213439,0.000090929585,0.0000165204,0.00023991609,0.00012848702,0.00009949538,0.000052348456,0.00012251081],"category_scores_gemma":[0.0000106976695,0.00009544556,0.000012247221,0.000016983327,0.00010897273,0.000024163117,0.000091677015,0.000060054663,0.0000037024204],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017681552,0.000015597861,0.12098095,0.000021690572,0.000012858967,0.0000011702341,0.0003313969,0.0000060692178,0.8779865,0.000015565216,0.00019821327,0.00025316517],"study_design_scores_gemma":[0.00202067,0.0003199844,0.50053376,0.000077324934,0.000019354602,0.000032663716,0.00057491637,0.00003133211,0.4943536,0.00001017172,0.0018416923,0.0001845483],"about_ca_topic_score_codex":0.00095312076,"about_ca_topic_score_gemma":0.017266849,"teacher_disagreement_score":0.38363293,"about_ca_system_score_codex":0.000032486365,"about_ca_system_score_gemma":0.00004489573,"threshold_uncertainty_score":0.96353066},"labels":[],"label_agreement":null},{"id":"W2755821481","doi":"10.1128/msphere.00384-16","title":"Drug-Free Approach To Study the Unusual Cell Cycle of Giardia intestinalis","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trent University","funders":"","keywords":"Giardia; Elutriation; Biology; Cell cycle; Microbiology; Giardia lamblia; Cell; Protozoa; Cyst; Pathology; Chemistry; Genetics; Medicine","score_opus":0.016900376756010714,"score_gpt":0.2682369630377945,"score_spread":0.2513365862817838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2755821481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8865888,0.00019959421,0.00041799407,0.00012075006,0.0003827121,0.0003088464,0.000031782678,0.000021966172,0.111927554],"genre_scores_gemma":[0.99718547,0.0000028881093,0.00025484338,0.000060455557,0.000034018027,0.00003879829,0.0000060375355,0.000008894194,0.002408576],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99936664,0.00010944643,0.00015209381,0.00016167384,0.00002861299,0.00018151212],"domain_scores_gemma":[0.99868095,0.00018718715,0.00009739378,0.0009465086,0.000070870454,0.000017109754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023556678,0.00010017859,0.0001622659,0.00001612119,0.0004915332,0.000026734111,0.00057241943,0.00006054455,0.00019055347],"category_scores_gemma":[0.00045122593,0.00006925445,0.00005625738,0.000047102494,0.00016346133,0.000035839952,0.00026519314,0.00016341894,0.00033251676],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001997853,0.0070910244,0.7272805,0.00006133767,0.0007238638,0.000024158036,0.011236904,0.00054852484,0.020220758,0.007622124,0.21049735,0.014493686],"study_design_scores_gemma":[0.0035460575,0.00063839846,0.92255425,0.000031050255,0.00032121025,0.000068683745,0.009379547,0.000020880278,0.044034358,0.0011055346,0.017895164,0.0004048889],"about_ca_topic_score_codex":0.0010559622,"about_ca_topic_score_gemma":0.0001327972,"teacher_disagreement_score":0.19527374,"about_ca_system_score_codex":0.000010617425,"about_ca_system_score_gemma":0.000027031352,"threshold_uncertainty_score":0.42739412},"labels":[],"label_agreement":null},{"id":"W2756055962","doi":"10.1128/msphere.00307-17","title":"A Multicenter Study To Evaluate the Performance of High-Throughput Sequencing for Virus Detection","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Standardization; Throughput; Computer science; Computational biology; Biology; Telecommunications; Operating system","score_opus":0.021575988723285956,"score_gpt":0.31954180319104236,"score_spread":0.2979658144677564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2756055962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9819285,0.000029882802,0.016815467,0.00012542141,0.000055788045,0.00089760654,0.000013791238,0.0000082114975,0.00012531257],"genre_scores_gemma":[0.9971727,0.00001409914,0.0020879412,0.00013090968,0.00007353999,0.0003409405,0.000007649519,0.000011746037,0.00016043516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99947035,0.000027822593,0.0001229838,0.00020964663,0.000052906114,0.00011626908],"domain_scores_gemma":[0.9991445,0.000005243648,0.00007589476,0.0006617963,0.00009034462,0.000022248847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021079891,0.00008051751,0.00008261397,0.0000060139323,0.00030047563,0.00001839187,0.00029000262,0.000050688617,0.0000067144633],"category_scores_gemma":[0.000050571587,0.00005747308,0.00004827358,0.00001800899,0.000049306527,0.0000025331276,0.00013156685,0.000040397754,0.000003840342],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008083511,0.000055681645,0.0020312532,0.0000083451105,0.000035126122,1.4000969e-7,0.000063743864,0.000064796164,0.9919259,0.00003005313,0.00018643528,0.0055176998],"study_design_scores_gemma":[0.0003805695,0.00080343714,0.010387063,0.0000073197893,0.000030580693,0.0000012269268,0.00010568748,0.00046368054,0.98401546,0.000034644316,0.003686429,0.00008390987],"about_ca_topic_score_codex":0.00021734224,"about_ca_topic_score_gemma":0.00057435205,"teacher_disagreement_score":0.015244219,"about_ca_system_score_codex":0.000011418179,"about_ca_system_score_gemma":0.000020017904,"threshold_uncertainty_score":0.23436841},"labels":[],"label_agreement":null},{"id":"W2756730981","doi":"10.1128/msphere.00327-17","title":"The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":191,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children’s Health Research Institute; Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Gut flora; Cohort; Population; Disease; Demography; Healthy aging; Chinese population; Cohort study; Gerontology; Medicine; Biology; Immunology; Environmental health; Internal medicine; Genetics; Genotype","score_opus":0.012929257959866217,"score_gpt":0.2944359384566961,"score_spread":0.28150668049682986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2756730981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862074,0.0015342303,0.000017824477,0.010135686,0.0004567657,0.0004112852,0.00010172169,0.000003849336,0.0011312381],"genre_scores_gemma":[0.9949369,0.00053534115,0.00019897197,0.0025969308,0.00011852454,0.0000073049932,0.000009984294,0.000021114623,0.0015749338],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99893236,0.000088470675,0.00028025868,0.00026357177,0.00011045184,0.00032490405],"domain_scores_gemma":[0.9980547,0.000016108039,0.00033953742,0.0014093817,0.00008520095,0.00009509455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003028138,0.00015658946,0.0002168589,0.000009128138,0.00067251344,0.00003062427,0.000839058,0.00014255884,0.00003336691],"category_scores_gemma":[0.000086053915,0.000090543974,0.00015012773,0.00005512806,0.0001831455,0.0000032440664,0.0003346443,0.00013511893,0.000008009355],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027588854,0.000059127255,0.068560876,0.00012715287,0.00003806769,4.369177e-7,0.00036401025,0.000005159013,0.8865461,0.000024872585,0.04319608,0.00080227765],"study_design_scores_gemma":[0.0011436319,0.0005874247,0.7817355,0.00008156001,0.000020952964,0.000016747454,0.00030989756,0.0000069217376,0.10071691,0.00007012011,0.11507184,0.00023851519],"about_ca_topic_score_codex":0.0006339094,"about_ca_topic_score_gemma":0.0028379818,"teacher_disagreement_score":0.7858291,"about_ca_system_score_codex":0.000017899127,"about_ca_system_score_gemma":0.00020964509,"threshold_uncertainty_score":0.51724976},"labels":[],"label_agreement":null},{"id":"W2761073565","doi":"10.1128/msphere.00267-17","title":"Bacterial Lipopolysaccharide Destabilizes Influenza Viruses","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Institute of Environmental Health Sciences; National Institute of Allergy and Infectious Diseases; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology","keywords":"Biology; Bacteria; Microbiology; Virus; Influenza A virus; Infectivity; Virology; Lipopolysaccharide; Host (biology); Immune system; Pathogen; Immunology; Ecology","score_opus":0.1516947271484699,"score_gpt":0.4184706455305301,"score_spread":0.26677591838206016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2761073565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9717882,0.0006065806,0.0000074914715,0.00044671597,0.00035496216,0.0003777028,0.000022231776,0.00012836266,0.026267748],"genre_scores_gemma":[0.9943732,0.00011948454,0.0011667336,0.0015801366,0.00091061887,0.000074197065,0.0000024859469,0.000050618008,0.0017225522],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984836,0.00003746262,0.0002682533,0.0003168364,0.0004106074,0.00048321811],"domain_scores_gemma":[0.9982734,0.00008481277,0.00012956289,0.0011103055,0.00020018384,0.00020173592],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00022775392,0.00020800855,0.00037875597,0.000039008162,0.00072616147,0.0002124926,0.00035458422,0.00011142847,0.0024979045],"category_scores_gemma":[0.002138871,0.00016552527,0.00012662522,0.000033710883,0.00043372108,0.00032432878,0.00035750822,0.00026221314,0.0008694972],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024380013,0.00028516856,0.63095164,0.00033748336,0.0004502097,0.00025957104,0.0008182184,0.0000031904137,0.306712,0.0012458405,0.016270539,0.04022812],"study_design_scores_gemma":[0.005030755,0.00047389243,0.3130087,0.00027064313,0.00013471779,0.000032879805,0.0003826688,0.000024943749,0.14005376,0.00047233823,0.5396596,0.00045510818],"about_ca_topic_score_codex":0.00075311307,"about_ca_topic_score_gemma":0.000367386,"teacher_disagreement_score":0.52338904,"about_ca_system_score_codex":0.00009065687,"about_ca_system_score_gemma":0.0001739565,"threshold_uncertainty_score":0.99990845},"labels":[],"label_agreement":null},{"id":"W2770627510","doi":"10.1128/msphere.00477-17","title":"The Candida albicans TOR-Activating GTPases Gtr1 and Rhb1 Coregulate Starvation Responses and Biofilm Formation","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Research Council Canada; National Tsing Hua University; Science Foundation Ireland","keywords":"Biofilm; Candida albicans; GTPase; Biology; Microbiology; Mutant; Effector; Regulator; Cell biology; Corpus albicans; Virulence; Gene; Bacteria; Biochemistry; Genetics","score_opus":0.029379509880082814,"score_gpt":0.3059771875019873,"score_spread":0.2765976776219045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2770627510","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955649,0.0006570162,0.000090377755,0.0016413984,0.000045097055,0.00020459163,0.000010828798,0.000021249214,0.0017645583],"genre_scores_gemma":[0.996548,0.0003603176,0.00022546688,0.00009660002,0.000053622247,0.0000071676127,0.000006512433,0.00000750643,0.0026948163],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99939835,0.000034507386,0.00014751866,0.00014244832,0.00013526031,0.00014193624],"domain_scores_gemma":[0.9992472,0.00016014648,0.00012717533,0.00031571958,0.0000888667,0.000060899],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025704075,0.00008445427,0.00012326062,0.000009679333,0.00088138646,0.00013510683,0.00005018871,0.000048287602,0.000037123107],"category_scores_gemma":[0.00075478206,0.000055152796,0.000018633187,0.00003037134,0.00021001676,0.00027714865,0.000036461355,0.00008331232,0.0000021580831],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017578605,0.00002929027,0.77080023,0.00019107923,0.00004043309,0.000015600204,0.0008307531,5.596338e-7,0.04544471,0.0006392029,0.002038634,0.17821163],"study_design_scores_gemma":[0.0005143432,0.00012568414,0.9853921,0.00013372685,0.000019669986,0.000008974073,0.0013519102,0.00039057742,0.004706945,0.00026212484,0.007018223,0.00007574241],"about_ca_topic_score_codex":0.0004276708,"about_ca_topic_score_gemma":0.0019100328,"teacher_disagreement_score":0.21459183,"about_ca_system_score_codex":0.000037228074,"about_ca_system_score_gemma":0.00005451603,"threshold_uncertainty_score":0.67790014},"labels":[],"label_agreement":null},{"id":"W2770982733","doi":"10.1128/msphere.00497-17","title":"The Genomic Landscape of the Fungus-Specific SWI/SNF Complex Subunit, Snf6, in Candida albicans","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Concordia University; McGill University","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Merck Sharp and Dohme; Concordia University; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Canadian Institutes of Health Research; Genome Canada; Government of Canada; Merck","keywords":"Candida albicans; Fungus; Protein subunit; Biology; Microbiology; Pathogenic fungus; Genetics; Computational biology; Botany; Gene","score_opus":0.028907326159427205,"score_gpt":0.2729445927521254,"score_spread":0.2440372665926982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2770982733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9442412,0.00034754272,0.000006214586,0.004221027,0.00004828185,0.0001513036,0.000025864794,0.000012534854,0.050946027],"genre_scores_gemma":[0.9929446,0.00009633488,0.000024362831,0.00031366924,0.00011947185,0.0000074669915,0.0000140586535,0.000012973206,0.0064670406],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999166,0.000053358097,0.00024075461,0.00014993719,0.00019164346,0.00019829738],"domain_scores_gemma":[0.99881184,0.000054185504,0.00016430899,0.0008490378,0.00005516662,0.000065456465],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001781484,0.00010455863,0.00022414251,0.000023680848,0.00037988255,0.000053013315,0.00032316026,0.00005088286,0.0020367347],"category_scores_gemma":[0.00004830584,0.000057537953,0.00014788599,0.000109361274,0.00020517677,0.00003314045,0.000086174594,0.0001887845,0.00006107594],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002648905,0.0002512352,0.82189465,0.0000812928,0.00019320149,0.00007050292,0.0009445393,0.00004897259,0.06761689,0.0017178658,0.09474483,0.012171134],"study_design_scores_gemma":[0.0012928473,0.000032777003,0.9047345,0.00017619654,0.000038245762,0.0000137456345,0.0010346771,0.00042734292,0.0011583477,0.00010637269,0.09088896,0.00009599448],"about_ca_topic_score_codex":0.00071445934,"about_ca_topic_score_gemma":0.008864515,"teacher_disagreement_score":0.08283984,"about_ca_system_score_codex":0.000044540648,"about_ca_system_score_gemma":0.00007071741,"threshold_uncertainty_score":0.99887556},"labels":[],"label_agreement":null},{"id":"W2772440592","doi":"10.1128/msphere.00555-17","title":"The Human Gut Microbial Metabolome Modulates Fungal Growth via the TOR Signaling Pathway","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Université Laval","funders":"Fonds de Recherche du Québec - Santé; Government of Canada; National Institutes of Health; Canada Foundation for Innovation; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada","keywords":"Metabolome; Biology; Signal transduction; Fungal growth; Microbiology; Cell biology; Metabolomics; Bioinformatics","score_opus":0.014884417131240222,"score_gpt":0.2532554569867605,"score_spread":0.23837103985552027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2772440592","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98313487,0.0027188794,0.00008204909,0.007993584,0.0036478308,0.0005152182,0.000042712152,0.0002392957,0.0016255474],"genre_scores_gemma":[0.9967024,0.000015149166,0.00064615073,0.00041937976,0.0010809099,0.000022826576,0.0000058198366,0.000071541945,0.0010358698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99785393,0.00023726818,0.00044432408,0.000496465,0.00022234835,0.0007456462],"domain_scores_gemma":[0.9974242,0.00017676302,0.0004237618,0.0017688121,0.00013740962,0.000069088004],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00065492553,0.00034623884,0.00037197335,0.00003239574,0.004044288,0.0006234428,0.002325179,0.00037142044,0.00020061806],"category_scores_gemma":[0.000440807,0.00020599064,0.00023179903,0.000109881505,0.0009261216,0.00020102065,0.0005278667,0.00074527925,0.00020550219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006881768,0.00003761621,0.0006214049,0.0000151994645,0.000082172206,0.00000847037,0.00019323138,0.0000048534753,0.97522116,0.0038217548,0.0019952068,0.01793013],"study_design_scores_gemma":[0.0005677112,0.00010762672,0.002763285,0.00003312295,0.000097658936,0.000050216167,0.00015847015,0.000046715446,0.89746565,0.0069118566,0.09144908,0.00034858604],"about_ca_topic_score_codex":0.0004380101,"about_ca_topic_score_gemma":0.0003738379,"teacher_disagreement_score":0.089453876,"about_ca_system_score_codex":0.00006390197,"about_ca_system_score_gemma":0.000024176923,"threshold_uncertainty_score":0.9972523},"labels":[],"label_agreement":null},{"id":"W2774229198","doi":"10.1128/msphere.00354-17","title":"Put3 Positively Regulates Proline Utilization in Candida albicans","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Canadian Institutes of Health Research; Concordia University; Deutsche Forschungsgemeinschaft","keywords":"Candida albicans; Saccharomyces cerevisiae; Yeast; Pathogen; Biology; Microbiology; Corpus albicans; Fungal pathogen; Transcription factor; Human pathogen; Gene; Genetics","score_opus":0.05052758065997377,"score_gpt":0.34349473564773414,"score_spread":0.2929671549877604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2774229198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96880525,0.00033206528,0.000097171,0.0016454182,0.000050530918,0.0002745035,0.000007613372,0.000026502332,0.028760955],"genre_scores_gemma":[0.9895027,0.000058454352,0.00022328281,0.00015543039,0.000072276365,0.000007949932,0.000017032578,0.000011311044,0.009951528],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992918,0.00001975031,0.00015599784,0.00021328905,0.00014170018,0.00017751408],"domain_scores_gemma":[0.9993503,0.000015659283,0.00006982957,0.0004181698,0.00007674516,0.00006927636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013340174,0.000089071735,0.00018862188,0.000016750884,0.00013409811,0.000031800442,0.000091348404,0.00007696484,0.000428053],"category_scores_gemma":[0.00022110881,0.00007372675,0.00004288785,0.00005031517,0.000100646095,0.0001119237,0.000028421991,0.00010862952,0.00002965237],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002934703,0.00010358422,0.97806466,0.000069480266,0.000012657271,0.00006577832,0.0001718644,0.0000020077748,0.004064852,0.00021460652,0.0006663629,0.01627067],"study_design_scores_gemma":[0.000779131,0.000082379884,0.99308413,0.00018966543,0.000016981423,0.000005253521,0.000117418975,0.00031927897,0.0034356932,0.00029322246,0.0016012965,0.00007555085],"about_ca_topic_score_codex":0.0006377049,"about_ca_topic_score_gemma":0.006010597,"teacher_disagreement_score":0.020697495,"about_ca_system_score_codex":0.000067214685,"about_ca_system_score_gemma":0.000096208605,"threshold_uncertainty_score":0.468688},"labels":[],"label_agreement":null},{"id":"W2782755660","doi":"10.1128/msphere.00551-17","title":"Evidence that the Plasmodium falciparum Protein Sortilin Potentially Acts as an Escorter for the Trafficking of the Rhoptry-Associated Membrane Antigen to the Rhoptries","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Australian Research Council; National Science Council; Canadian Blood Services","keywords":"Rhoptry; Biology; Plasmodium falciparum; Cell biology; Biogenesis; Transmembrane protein; Transport protein; Golgi apparatus; Plasmodium (life cycle); Malaria; Parasite hosting; Apicomplexa; Endoplasmic reticulum; Immunology; Genetics; Gene","score_opus":0.037628351016045496,"score_gpt":0.29603027044896457,"score_spread":0.25840191943291907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2782755660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9659872,0.001284814,0.0007005566,0.027021544,0.00041226487,0.0041300245,0.000040869654,0.000057449583,0.00036528503],"genre_scores_gemma":[0.99406797,0.00004739188,0.00004973746,0.002979295,0.00048322667,0.00034727697,0.0000064980904,0.000044679167,0.0019739268],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9978489,0.0002145686,0.00037530327,0.00038668414,0.0006574628,0.0005170455],"domain_scores_gemma":[0.9976881,0.00035008308,0.00034303276,0.0011571278,0.00033515,0.00012647292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008276778,0.00026371493,0.00034564882,0.000016685884,0.00073704874,0.00014270304,0.000971499,0.000120064455,0.00032564008],"category_scores_gemma":[0.00095565995,0.00010534375,0.0003461837,0.0002934125,0.00030917043,0.00014496631,0.00014894559,0.00023846916,0.000028391212],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03569257,0.0037666883,0.06314268,0.0013609977,0.0068176053,0.00008123321,0.04772252,0.0028133744,0.323652,0.0071820472,0.047922023,0.45984626],"study_design_scores_gemma":[0.009623416,0.005657822,0.5654232,0.004687794,0.0043587075,0.00006213146,0.02407946,0.025179457,0.24844374,0.0008453042,0.11023603,0.0014029567],"about_ca_topic_score_codex":0.00030718296,"about_ca_topic_score_gemma":0.00238182,"teacher_disagreement_score":0.50228053,"about_ca_system_score_codex":0.00003937042,"about_ca_system_score_gemma":0.00036009998,"threshold_uncertainty_score":0.5668857},"labels":[],"label_agreement":null},{"id":"W2783653218","doi":"10.1128/mspheredirect.00554-17","title":"Stability of the Influenza Virus Hemagglutinin Protein Correlates with Evolutionary Dynamics","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Defense Advanced Research Projects Agency; Hartwell Foundation","keywords":"Hemagglutinin (influenza); Biology; Influenza A virus; Virus; Genetics; Lineage (genetic); Antigenic drift; Nucleoprotein; Phylogenetic tree; Virology; Viral evolution; Molecular evolution; H5N1 genetic structure; Evolutionary biology; Evolutionary dynamics; Gene; Coronavirus disease 2019 (COVID-19); Population; Genome","score_opus":0.04211826479044123,"score_gpt":0.3182540631687306,"score_spread":0.2761357983782894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2783653218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98325604,0.00063247106,0.000046979174,0.00039971873,0.000050390947,0.0009962311,0.00005228531,0.000052646006,0.014513208],"genre_scores_gemma":[0.99766403,0.0000052392284,0.0011120475,0.0002635493,0.00008095904,0.00006173084,0.0000028712764,0.000022315257,0.0007872323],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985132,0.000092007314,0.00028240556,0.00024179806,0.00054737256,0.000323208],"domain_scores_gemma":[0.99851036,0.000074653086,0.0001206634,0.0006189096,0.00059886946,0.00007654857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025231065,0.0001589879,0.0002727254,0.000022560731,0.00020861586,0.0000073459355,0.00018360344,0.000088310255,0.0006012039],"category_scores_gemma":[0.00056508364,0.00008995143,0.00007663822,0.00038777333,0.0012658425,0.00007529298,0.00021274904,0.00031884914,0.00008101047],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023683927,0.0004260708,0.9669013,0.00042057072,0.000280286,0.000011341712,0.0012046207,0.000013919743,0.02146392,0.0018107949,0.002444913,0.00265388],"study_design_scores_gemma":[0.004242194,0.00272003,0.86110127,0.0011004161,0.00016467922,0.000049540926,0.0026124474,0.0037154404,0.10626232,0.0011082245,0.016488925,0.00043450677],"about_ca_topic_score_codex":0.00034731897,"about_ca_topic_score_gemma":0.0009118343,"teacher_disagreement_score":0.10580001,"about_ca_system_score_codex":0.00022631563,"about_ca_system_score_gemma":0.0003376203,"threshold_uncertainty_score":0.6582761},"labels":[],"label_agreement":null},{"id":"W2784013983","doi":"10.1128/msphere.00499-17","title":"Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Prince Edward Island; Institut National de Santé Publique du Québec","funders":"National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Biological dispersal; Cryptococcus gattii; Enzootic; Biology; Geography; Panama; Ecology; Zoology; Cryptococcus; Demography; Population; Genetics","score_opus":0.014580232370737712,"score_gpt":0.27424155349434404,"score_spread":0.25966132112360635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2784013983","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9680265,0.00007135752,0.00014435747,0.0058832583,0.00027704163,0.00040757938,0.000017656823,0.00005882379,0.025113432],"genre_scores_gemma":[0.9961492,0.000014670486,0.00021016624,0.0011515687,0.0009072351,0.00006964424,0.0000068185213,0.00001518144,0.0014755265],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992972,0.000032390122,0.00013013819,0.00017412973,0.00014259448,0.00022352871],"domain_scores_gemma":[0.9992829,0.00009305223,0.000044478158,0.00040354164,0.000106112515,0.00006992223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000092534625,0.00011208103,0.00014932294,0.000012016866,0.00062114454,0.00003759201,0.00010688826,0.000012789666,0.00033025822],"category_scores_gemma":[0.00012186866,0.00005203449,0.000060343347,0.0004520546,0.00029755055,0.000026154614,0.000078570985,0.00015722633,0.00050617236],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000340587,0.000044518547,0.93151003,0.0000073290485,0.000072123046,0.0000047362464,0.0019066235,0.000008195846,0.00009741123,0.00010242517,0.04647754,0.019734984],"study_design_scores_gemma":[0.00012813434,0.0004076688,0.73517257,0.000016110977,0.00004097838,0.000010966277,0.0047556185,0.00011595989,0.000041620082,0.0000019027106,0.2592338,0.00007465106],"about_ca_topic_score_codex":0.0019156622,"about_ca_topic_score_gemma":0.041501768,"teacher_disagreement_score":0.21275625,"about_ca_system_score_codex":0.000030504305,"about_ca_system_score_gemma":0.00002684409,"threshold_uncertainty_score":0.9759883},"labels":[],"label_agreement":null},{"id":"W2789655023","doi":"10.1128/msphere.00568-17","title":"A Novel <i>aadA</i> Aminoglycoside Resistance Gene in Bovine and Porcine Pathogens","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Alberta Health Services; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Government of Canada","keywords":"Biology; Spectinomycin; Gene; Pathogen; Mobile genetic elements; Antibiotic resistance; Aminoglycoside; Human pathogen; Microbiology; Genetics; Streptomycin; Virology; Plasmid; Antibiotics","score_opus":0.01317598764408877,"score_gpt":0.24903293420584366,"score_spread":0.23585694656175488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789655023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862552,0.0066504176,0.00032384376,0.00030586563,0.00016089425,0.00018226543,0.00011277831,0.000041370404,0.00596735],"genre_scores_gemma":[0.98836225,0.00015717228,0.0004047738,0.00023691161,0.0000681834,0.000015988044,0.00004503976,0.000014476425,0.010695177],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991337,0.000056245946,0.00018559047,0.00027726998,0.00002308885,0.00032412435],"domain_scores_gemma":[0.9995841,0.000040809864,0.000035167464,0.00023003954,0.00007415597,0.00003573962],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015526814,0.000116769625,0.00016801477,0.000056117275,0.00014913881,0.00001667217,0.00008389735,0.00012671901,0.0013340703],"category_scores_gemma":[0.000052616746,0.00010589892,0.000033102344,0.0002102551,0.00024643136,0.000053136675,0.00008851429,0.00015551582,0.00031022355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022026803,0.0001431634,0.006017894,0.000019955676,0.000024145456,0.000015674861,0.00008011245,3.065783e-7,0.9792067,0.00043836958,0.012483394,0.0013500621],"study_design_scores_gemma":[0.0063427393,0.00059498317,0.09791048,0.00018332347,0.000053817093,0.00035471385,0.00032349877,0.000013210919,0.46205944,0.00046410228,0.4310423,0.00065737584],"about_ca_topic_score_codex":0.00043051003,"about_ca_topic_score_gemma":0.004676284,"teacher_disagreement_score":0.5171472,"about_ca_system_score_codex":0.00003264802,"about_ca_system_score_gemma":0.00005814212,"threshold_uncertainty_score":0.99957883},"labels":[],"label_agreement":null},{"id":"W2790302385","doi":"10.1128/msphere.00074-18","title":"A Holistic Assessment of the Risks and Benefits of the Synthesis of Horsepox Virus","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biodefense; Biosecurity; Variola virus; Smallpox; Smallpox virus; Orthopoxvirus; Virology; Biological warfare; Virus; Virus inactivation; Vaccinia; Biology; Vaccination; Microbiology; Genetics","score_opus":0.04948949933768414,"score_gpt":0.31860727892238916,"score_spread":0.269117779584705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790302385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913102,0.0014517027,0.000009172532,0.00009877614,0.0001592858,0.00014619346,0.00018967155,0.000003984587,0.006631037],"genre_scores_gemma":[0.99923766,0.00009770242,0.000033312543,0.00002497029,0.00001399994,0.0000075916128,7.946856e-7,0.000005912951,0.00057808135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926966,0.00020543215,0.00019007886,0.00010982305,0.000058012207,0.00016701916],"domain_scores_gemma":[0.99916166,0.00021139177,0.00015157404,0.00037072683,0.000092350085,0.000012289427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020066235,0.000076233526,0.00019648552,0.0000151571385,0.00009566753,0.0000027674596,0.00031522175,0.00010577517,0.00047056787],"category_scores_gemma":[0.000248742,0.000039695507,0.0000760813,0.00011260411,0.000834302,0.00001882166,0.0002170613,0.00014135556,0.000010256817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017124054,0.00023399333,0.09524984,0.00013547782,0.00038341983,4.0025228e-7,0.00045811836,0.00001029205,0.8502134,0.003975513,0.003230357,0.04593796],"study_design_scores_gemma":[0.00023356472,0.000088038476,0.4737573,0.00008545055,0.00004202714,0.000004695832,0.00011284009,0.000005100298,0.52309215,0.0001587679,0.0023808558,0.00003923501],"about_ca_topic_score_codex":0.0011603533,"about_ca_topic_score_gemma":0.00069349195,"teacher_disagreement_score":0.37850747,"about_ca_system_score_codex":0.00001013227,"about_ca_system_score_gemma":0.00008354061,"threshold_uncertainty_score":0.5152388},"labels":[],"label_agreement":null},{"id":"W2790323868","doi":"10.1128/msphere.00017-18","title":"Air-Dried Brown Seaweed, <i>Ascophyllum nodosum</i> , Alters the Rumen Microbiome in a Manner That Changes Rumen Fermentation Profiles and Lowers the Prevalence of Foodborne Pathogens","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Acadian Seaplants (Canada); Agriculture Food and Rural Development; Agriculture and Agri-Food Canada; University of Alberta","funders":"","keywords":"Rumen; Ascophyllum; Biology; Fermentation; Feces; Population; Microbiome; Food science; Butyrate; Microbiology; Animal science; Botany; Algae","score_opus":0.01915953920113603,"score_gpt":0.22057271515501273,"score_spread":0.2014131759538767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790323868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911367,0.00036750291,3.3819256e-7,0.0073069106,0.000077790915,0.00045543228,0.0001453927,0.000016089856,0.0004937867],"genre_scores_gemma":[0.99796313,0.00027779725,0.000023868326,0.00057925965,0.00010813919,0.000050500545,0.000028972705,0.0000015628848,0.0009667561],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999118,0.00015022792,0.00013688013,0.0002527225,0.000108115666,0.00023408336],"domain_scores_gemma":[0.99963623,0.00009421966,0.00010853289,0.000078863144,0.00004650182,0.00003566697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017094864,0.00012762436,0.00013748666,0.00000840892,0.00017759617,0.000024961584,0.00023028851,0.00006285931,0.00021493784],"category_scores_gemma":[0.000009706595,0.00004187793,0.00004004468,0.00022903342,0.0004462714,0.00007868223,0.000090965164,0.00007135392,0.000014901979],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013014932,0.00008613593,0.017473135,0.00005810251,0.000011623123,0.0000019259544,0.00054422073,6.712026e-7,0.9707163,0.00009327624,0.0012966172,0.009587825],"study_design_scores_gemma":[0.00052101334,0.0010299793,0.8743626,0.00012966408,0.000023958626,0.0000148480885,0.002962447,0.000023712488,0.107206516,0.00041463072,0.013105318,0.00020535053],"about_ca_topic_score_codex":0.00024726512,"about_ca_topic_score_gemma":0.00066980027,"teacher_disagreement_score":0.8635098,"about_ca_system_score_codex":0.0000151803015,"about_ca_system_score_gemma":0.0000056430385,"threshold_uncertainty_score":0.23534186},"labels":[],"label_agreement":null},{"id":"W2791231298","doi":"10.1128/msphere.00079-18","title":"Re-creation of Horsepox Virus","year":2018,"lang":"en","type":"letter","venue":"mSphere","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Virology; Computer science; Medicine","score_opus":0.018571832853453072,"score_gpt":0.2746016303138164,"score_spread":0.2560297974603633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791231298","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.019004876,0.026607662,0.00021050793,0.3480998,0.0055780658,0.0016684636,0.002648598,0.00043671744,0.5957453],"genre_scores_gemma":[0.038776822,0.0009971913,0.00027834685,0.36965737,0.0055951965,0.000117472395,0.007883041,0.00021671884,0.5764778],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985505,0.00025185794,0.0003015077,0.00032915972,0.0000795047,0.00048751044],"domain_scores_gemma":[0.99899805,0.000122622,0.00019060192,0.0005360409,0.00013620708,0.000016484439],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00015138334,0.0002315818,0.0004066676,0.000078476245,0.00008740378,0.000012804365,0.00041485135,0.001504589,0.017943464],"category_scores_gemma":[0.000103493476,0.00019680656,0.00015933225,0.00010612866,0.0004328652,0.000045879555,0.00011191003,0.00122303,0.0061045373],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007028743,0.000020672056,0.00007754469,0.00007657537,0.00019963183,0.000036637848,0.00007755107,7.051617e-8,0.023919681,0.0000090179965,0.9704646,0.0050477628],"study_design_scores_gemma":[0.00036729485,0.00018582153,0.00013891679,0.00007640721,0.00003960862,0.0000116713145,0.000026000254,3.22955e-7,0.052347127,0.00013832611,0.94649017,0.00017835267],"about_ca_topic_score_codex":0.00091432664,"about_ca_topic_score_gemma":0.00032676372,"teacher_disagreement_score":0.028427446,"about_ca_system_score_codex":0.000042722106,"about_ca_system_score_gemma":0.00012585771,"threshold_uncertainty_score":0.9997917},"labels":[],"label_agreement":null},{"id":"W2796345679","doi":"10.1128/msphere.00038-18","title":"Pseudotyping of HIV-1 with Human T-Lymphotropic Virus 1 (HTLV-1) Envelope Glycoprotein during HIV-1–HTLV-1 Coinfection Facilitates Direct HIV-1 Infection of Female Genital Epithelial Cells: Implications for Sexual Transmission of HIV-1","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute on Minority Health and Health Disparities; National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; Tarbiat Modares University; University of Toronto","keywords":"Coinfection; Virology; Tropism; Virus; Biology; Viral entry; Viral replication; Immunology","score_opus":0.013951438931466883,"score_gpt":0.2374743984354755,"score_spread":0.2235229595040086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2796345679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904149,0.00070574903,0.005435323,0.000051248044,0.00021364728,0.00083494675,0.0011328777,0.000100940786,0.0011103218],"genre_scores_gemma":[0.99493116,0.00011691777,0.000637331,0.0000054097754,0.00009363321,0.00012127128,0.00022847169,0.00004326095,0.0038225614],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99812275,0.00014367545,0.0007239243,0.0004996203,0.00007367139,0.0004363403],"domain_scores_gemma":[0.9986585,0.00012364892,0.00047134073,0.00037151933,0.00033530616,0.000039684463],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00016549998,0.00034780725,0.0006736708,0.00015599935,0.0005790695,0.000009438674,0.00018555432,0.00030824635,0.00028264144],"category_scores_gemma":[0.000034266217,0.00029081662,0.00019371157,0.00027477412,0.0007460618,0.00014871839,0.000078426085,0.00018893198,0.00009357111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008115087,0.00034090207,0.04309712,0.0005667088,0.0003598324,5.006087e-7,0.0018588396,0.00008208563,0.9499047,0.0000699683,0.00032771673,0.0025801198],"study_design_scores_gemma":[0.0028538,0.0013949104,0.06809172,0.00015927765,0.00018979814,0.000024142932,0.00054655917,0.000010823208,0.92175674,0.0000486925,0.00460322,0.00032033885],"about_ca_topic_score_codex":0.00092602754,"about_ca_topic_score_gemma":0.00049860013,"teacher_disagreement_score":0.028147977,"about_ca_system_score_codex":0.000094702744,"about_ca_system_score_gemma":0.00008960919,"threshold_uncertainty_score":0.9999544},"labels":[],"label_agreement":null},{"id":"W2801467281","doi":"10.1128/msphere.00090-18","title":"Beaver Fever: Whole-Genome Characterization of Waterborne Outbreak and Sporadic Isolates To Study the Zoonotic Transmission of Giardiasis","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; Provincial Health Services Authority; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Giardia; Outbreak; Biology; Transmission (telecommunications); Waterborne diseases; Zoonosis; Genetic diversity; Beaver; Wildlife; Feces; Giardia lamblia; Genome; Veterinary medicine; Zoology; Ecology; Environmental health; Virology; Microbiology; Genetics; Population; Gene","score_opus":0.009592784336674412,"score_gpt":0.2326409992646806,"score_spread":0.2230482149280062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2801467281","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976245,0.0001650883,0.001318505,0.00015262407,0.00016740386,0.00031444157,0.00006143312,0.000012839789,0.00018313811],"genre_scores_gemma":[0.9993929,0.000022598335,0.000050076655,0.00006219075,0.000023895098,0.000008980947,0.00003877979,0.00000852011,0.00039200336],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99941576,0.00008309259,0.00021533895,0.00013632912,0.000020422161,0.00012904528],"domain_scores_gemma":[0.9995861,0.000061497965,0.000070810136,0.00017998306,0.00008457136,0.00001703042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013448612,0.000093597824,0.00019496494,0.000034105047,0.000119032644,0.0000059624163,0.00008005314,0.000082959734,0.00041328734],"category_scores_gemma":[0.000021709968,0.000062542895,0.000033280146,0.00011643407,0.00013778787,0.00003943259,0.00003325536,0.000064675354,0.00010038384],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008553396,0.00032325034,0.052162245,0.000017138704,0.00015974355,9.70718e-7,0.0042506433,0.000004654633,0.9324687,0.000044132674,0.000059834616,0.010423145],"study_design_scores_gemma":[0.0008081616,0.0007658419,0.89974666,0.00003062649,0.00015932799,0.000013388291,0.00060246605,0.000009523782,0.08669135,0.000043072265,0.0110174315,0.00011214431],"about_ca_topic_score_codex":0.00011096624,"about_ca_topic_score_gemma":0.000009143373,"teacher_disagreement_score":0.8475844,"about_ca_system_score_codex":0.0000075728526,"about_ca_system_score_gemma":0.0000148573545,"threshold_uncertainty_score":0.45252067},"labels":[],"label_agreement":null},{"id":"W2801652714","doi":"10.1128/msphere.00125-18","title":"Iron Acquisition and Siderophore Release by Carbapenem-Resistant Sequence Type 258 Klebsiella pneumoniae","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Klebsiella pneumoniae; Siderophore; Microbiology; Sequence (biology); Biology; Bacteria; Escherichia coli; Gene; Genetics","score_opus":0.008110519485203652,"score_gpt":0.24315920752131356,"score_spread":0.2350486880361099,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2801652714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99504685,0.0015842748,0.00007437232,0.00015819665,0.00016841343,0.0001208033,0.000037133086,0.000019097755,0.0027908445],"genre_scores_gemma":[0.99561536,0.00041407632,0.00049183064,0.00031010536,0.0002452506,0.0000025125385,0.00011047348,0.000030601794,0.0027797585],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900055,0.000048261965,0.00016549847,0.0004204573,0.00011379741,0.00025140998],"domain_scores_gemma":[0.99931836,0.000008047081,0.00007702774,0.00038544514,0.000111340705,0.000099804936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007025035,0.00017156989,0.00013135214,0.000009061915,0.00011301636,0.000053964675,0.00014475794,0.00017346174,0.00019050557],"category_scores_gemma":[0.000044555374,0.00016425291,0.0000322955,0.00007317098,0.00024410259,0.0000063818957,0.000086602384,0.0000650297,0.00006032772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016971718,0.00001880442,0.0056772265,0.000027943708,0.000014033395,0.000010301202,0.000022959015,8.9428954e-7,0.980105,0.000030394545,0.013067593,0.00085514516],"study_design_scores_gemma":[0.00090688345,0.0016475045,0.021863395,0.00013120592,0.00006477539,0.000064423744,0.00033963347,0.0001243087,0.82149327,0.00024815608,0.152282,0.00083445],"about_ca_topic_score_codex":0.00006287573,"about_ca_topic_score_gemma":0.000094227435,"teacher_disagreement_score":0.15861171,"about_ca_system_score_codex":0.000023843571,"about_ca_system_score_gemma":0.000054628,"threshold_uncertainty_score":0.6698039},"labels":[],"label_agreement":null},{"id":"W2805814235","doi":"10.1128/msphere.00245-18","title":"Sublingual Adjuvant Delivery by a Live Attenuated Vibrio cholerae-Based Antigen Presentation Platform","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Government of Canada; Canadian Food Inspection Agency","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Vibrio cholerae; Immunogenicity; Adjuvant; Cholera toxin; Antigen; Microbiology; Cholera; Antigen presentation; Immune system; Cholera vaccine; Virology; Biology; Vaccination; Heterologous; Immunology; Medicine; T cell; Bacteria","score_opus":0.015242881838945422,"score_gpt":0.27928679654219635,"score_spread":0.26404391470325095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2805814235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99712217,0.0007393493,0.00039185962,0.00020673069,0.0001369584,0.00027784487,0.00010302381,0.000034025412,0.0009880357],"genre_scores_gemma":[0.9968325,0.00012817823,0.0005140292,0.00030240338,0.00056114554,0.000031203388,0.00064629276,0.000031775344,0.00095250603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987595,0.00004848556,0.0001886692,0.00039327724,0.0002239916,0.00038605498],"domain_scores_gemma":[0.9991971,0.000014848894,0.0000771369,0.00030518803,0.00030167692,0.00010402178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011600372,0.00018313208,0.00015929595,0.00002511527,0.00017510087,0.00006856288,0.00021299196,0.0001362021,0.00028271746],"category_scores_gemma":[0.00010759733,0.00016976695,0.00007330516,0.00011255203,0.00019687942,0.000012067849,0.00015541099,0.00009161131,0.00016868307],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031962566,0.00006768349,0.0056965747,0.000017459557,0.000104398896,0.0000060254056,0.00013432372,0.0000072372736,0.9378891,0.0000010977075,0.051868875,0.0038875954],"study_design_scores_gemma":[0.0017603983,0.00088690803,0.024450779,0.000033732627,0.000017769245,0.000004445004,0.00027980783,0.00058134715,0.8721034,0.000009684718,0.09953761,0.00033410318],"about_ca_topic_score_codex":0.0002584487,"about_ca_topic_score_gemma":0.00031811907,"teacher_disagreement_score":0.06578569,"about_ca_system_score_codex":0.000030634375,"about_ca_system_score_gemma":0.00014065312,"threshold_uncertainty_score":0.69228953},"labels":[],"label_agreement":null},{"id":"W2808460002","doi":"10.1128/msphere.00219-18","title":"Rectal and Naris Swabs: Practical and Informative Samples for Analyzing the Microbiota of Critically Ill Patients","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakeridge Health; University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Critically ill; Observational study; Microbiome; Critical illness; Intensive care medicine; Population; Medicine; Biology; Internal medicine; Bioinformatics; Environmental health","score_opus":0.012932171514020643,"score_gpt":0.29262705986739157,"score_spread":0.2796948883533709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2808460002","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99701995,0.00027460602,0.0010957597,0.0009124584,0.000043565644,0.00021529564,0.00008686352,0.0000028308239,0.00034866494],"genre_scores_gemma":[0.99031264,0.00010114231,0.00838219,0.001008592,0.000073743606,0.0000054024713,0.000047639383,0.0000081082735,0.00006055102],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99950254,0.000028113267,0.00015493637,0.00013476616,0.00002937156,0.00015026289],"domain_scores_gemma":[0.9992853,0.000048710706,0.00005963888,0.00011264815,0.00044994807,0.00004379047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116187046,0.00007794185,0.00009919964,0.000008436513,0.00012164757,0.00001984526,0.000049502654,0.000087210734,0.000013675242],"category_scores_gemma":[0.000431846,0.0000552583,0.000026403348,0.000030268946,0.0002449516,0.0000059759604,0.00008117424,0.000050974315,0.000001180273],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063558,0.00018306941,0.040604975,0.00037394886,0.0001893171,4.16944e-7,0.0022261734,4.4169462e-7,0.8979427,0.0010717572,0.042242218,0.014529353],"study_design_scores_gemma":[0.0053869593,0.0073885727,0.24271238,0.00023531554,0.00026171296,0.00009564017,0.0064572366,0.00023607156,0.3453793,0.00090862834,0.38996834,0.00096987176],"about_ca_topic_score_codex":0.000032045216,"about_ca_topic_score_gemma":0.00009655918,"teacher_disagreement_score":0.5525635,"about_ca_system_score_codex":0.000004557947,"about_ca_system_score_gemma":0.000054692835,"threshold_uncertainty_score":0.2253368},"labels":[],"label_agreement":null},{"id":"W2809879039","doi":"10.1128/msphere.00328-18","title":"Erratum for Bansal et al., “Rectal and Naris Swabs: Practical and Informative Samples for Analyzing the Microbiota of Critically Ill Patients”","year":2018,"lang":"en","type":"erratum","venue":"mSphere","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakeridge Health; University Health Network; University of Toronto","funders":"","keywords":"Critically ill; Medicine; Intensive care medicine; Biology","score_opus":0.02161448488861241,"score_gpt":0.31621091591749106,"score_spread":0.29459643102887867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809879039","genre_codex":"commentary","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10522617,0.012340936,0.14309628,0.33939445,0.053620894,0.05157039,0.013563308,0.00091786654,0.2802697],"genre_scores_gemma":[0.10671805,0.008577887,0.43331754,0.13985325,0.0073410324,0.005010133,0.020488948,0.0015524435,0.2771407],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984966,0.000066607674,0.00052754715,0.00036405917,0.00020004605,0.0003451666],"domain_scores_gemma":[0.9970065,0.0007733321,0.00029670403,0.00034639536,0.0014703618,0.000106756605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000447654,0.00033511367,0.00056455657,0.00010374159,0.00022279705,0.00009000052,0.0001004636,0.00028864277,0.000082323415],"category_scores_gemma":[0.0025060978,0.00024436173,0.00016307535,0.00012983193,0.000391657,0.00024475742,0.00016215023,0.00058339897,0.0000031051627],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039762506,0.0005636846,0.0006420228,0.0011767125,0.000548152,0.0000018492117,0.0006067619,4.2553188e-7,0.000021851476,0.0006248369,0.9942983,0.0011178217],"study_design_scores_gemma":[0.0016980186,0.004961482,0.0042293607,0.0005462814,0.00094427675,0.00004509827,0.0011589219,0.00036894664,0.000032910208,0.0003115298,0.98542184,0.000281343],"about_ca_topic_score_codex":0.0000703022,"about_ca_topic_score_gemma":0.00012132552,"teacher_disagreement_score":0.29022124,"about_ca_system_score_codex":0.0000736652,"about_ca_system_score_gemma":0.00024985938,"threshold_uncertainty_score":0.99647814},"labels":[],"label_agreement":null},{"id":"W2884924025","doi":"10.1128/msphere.00162-18","title":"The Third Transmembrane Domain of EscR Is Critical for Function of the Enteropathogenic <i>Escherichia coli</i> Type III Secretion System","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Technische Universität München; Israel Science Foundation; Government of Canada","keywords":"Virulence; Transmembrane protein; Secretion; Transmembrane domain; Type three secretion system; Escherichia coli; Enteropathogenic Escherichia coli; Interactome; Biology; Microbiology; Cell biology; Biochemistry; Receptor; Gene","score_opus":0.010020116090949119,"score_gpt":0.25986001136333553,"score_spread":0.24983989527238643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884924025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98898745,0.0015515641,0.005556901,0.00046716063,0.00038094466,0.00052161893,0.000051877945,0.000009233934,0.0024732575],"genre_scores_gemma":[0.99855155,0.00010840281,0.00032461382,0.00013356868,0.00021659424,0.000056144458,0.00000661561,0.000016669805,0.00058582635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990093,0.00014429055,0.00023953665,0.00019919791,0.0001904786,0.0002171914],"domain_scores_gemma":[0.99904054,0.000062362094,0.00008262118,0.0003674022,0.00041187022,0.00003519757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038607212,0.0001120728,0.00015310197,0.0000059546664,0.00023601341,0.000012419182,0.0002467125,0.00011004516,0.000012965392],"category_scores_gemma":[0.00013398785,0.00006822377,0.00014706966,0.00013780674,0.00042196614,0.000003403546,0.00008263687,0.0000785918,0.000002382305],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008489507,0.000035748526,0.0003949436,0.00021424572,0.0001000578,1.16630304e-7,0.00012293672,0.0000013253054,0.99307036,0.0014871827,0.0033666682,0.00035747164],"study_design_scores_gemma":[0.0022539666,0.0040468364,0.0060812854,0.00023692014,0.0002111421,0.000006628112,0.0039207316,0.0007826129,0.8553146,0.00049317884,0.12633519,0.0003168764],"about_ca_topic_score_codex":0.000018525036,"about_ca_topic_score_gemma":0.00015074153,"teacher_disagreement_score":0.13775572,"about_ca_system_score_codex":0.000015491574,"about_ca_system_score_gemma":0.00008881619,"threshold_uncertainty_score":0.27820846},"labels":[],"label_agreement":null},{"id":"W2893369851","doi":"10.1128/msphere.00346-18","title":"Widespread Antibiotic, Biocide, and Metal Resistance in Microbial Communities Inhabiting a Municipal Waste Environment and Anthropogenically Impacted River","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"McMaster University","keywords":"Leachate; Environmental science; Contamination; Microbial population biology; Pollutant; Resistome; Biocide; Metagenomics; Bioremediation; Microbial ecology; Environmental chemistry; Waste management; Environmental engineering; Ecology; Antibiotic resistance; Biology; Engineering; Bacteria; Chemistry","score_opus":0.011140983062696853,"score_gpt":0.2278530927178365,"score_spread":0.21671210965513965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2893369851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966962,0.00025754317,0.000009121662,0.00017773788,0.00004998322,0.00016188067,0.00002668736,0.0000170927,0.002603751],"genre_scores_gemma":[0.99724776,0.00020647875,0.0019707559,0.0002939954,0.000027903392,0.000001910852,0.000021085241,0.000013989593,0.00021615328],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987049,0.0004374876,0.00023679102,0.00021568949,0.00006266255,0.00034244513],"domain_scores_gemma":[0.9993087,0.00019378407,0.00008580761,0.00033218577,0.0000049527916,0.00007456455],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002866723,0.00017872751,0.00025858192,0.000023909934,0.0004089134,0.000021632599,0.00024204722,0.00014895458,0.0027442267],"category_scores_gemma":[0.000029930718,0.00017421172,0.000030291516,0.00009673325,0.003149289,0.00015533215,0.00080510054,0.00031803036,0.00008797334],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003866079,0.00022335735,0.18765289,0.00003469463,0.0000599445,0.000020923975,0.01378109,0.000031897405,0.79405123,0.00013772088,0.0017752915,0.0018443568],"study_design_scores_gemma":[0.00338422,0.001113952,0.93165815,0.0002464953,0.000096499934,0.000087227374,0.008578239,0.0005578346,0.032696877,0.002354731,0.01806799,0.0011577944],"about_ca_topic_score_codex":0.0041627185,"about_ca_topic_score_gemma":0.07624693,"teacher_disagreement_score":0.7613544,"about_ca_system_score_codex":0.0000672115,"about_ca_system_score_gemma":0.0000074727127,"threshold_uncertainty_score":0.9995636},"labels":[],"label_agreement":null},{"id":"W2894966346","doi":"10.1128/msphere.00473-18","title":"Biofilm Formation Drives Transfer of the Conjugative Element ICE <i>Bs1</i> in <i>Bacillus subtilis</i>","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biofilm; Bacillus subtilis; Context (archaeology); Bacteria; Horizontal gene transfer; Microbiology; Biology; Extracellular polymeric substance; Multicellular organism; Chemistry; Genetics; Ecology; Gene; Phylogenetics","score_opus":0.008185504541653364,"score_gpt":0.21731438438750472,"score_spread":0.20912887984585135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2894966346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99535406,0.00012360855,0.00013917664,0.00025036727,0.0002044716,0.00019916194,0.0000380314,0.0000049336954,0.0036862104],"genre_scores_gemma":[0.99902564,0.000044526172,0.00019221724,0.00039311193,0.00013278941,0.0000043949667,0.00003055822,0.000010006709,0.00016673068],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992722,0.00006622472,0.00022634053,0.00016890018,0.00008874341,0.00017757724],"domain_scores_gemma":[0.9996052,0.00000594805,0.000052851567,0.00022820156,0.00008127579,0.000026563901],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010911566,0.000109853616,0.000114111426,0.000010529001,0.000059131497,0.000011958136,0.00012669656,0.00010339845,0.000058789537],"category_scores_gemma":[0.000016575481,0.000079826445,0.00006706922,0.00010746114,0.00016141296,0.0000078425755,0.00005201544,0.00005621591,0.000006955375],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079880134,0.000028101573,0.000996532,0.000013822672,0.000012200501,2.6781416e-7,0.000307611,0.0000026938355,0.99549544,0.00010917705,0.00072286837,0.002231391],"study_design_scores_gemma":[0.00052468275,0.00018496167,0.0034228,0.00003275963,0.000008447396,0.0000031361571,0.00031359712,0.000027851325,0.95761126,0.000016098882,0.03775208,0.00010229767],"about_ca_topic_score_codex":0.00006546525,"about_ca_topic_score_gemma":0.0009887853,"teacher_disagreement_score":0.03788417,"about_ca_system_score_codex":0.000011632499,"about_ca_system_score_gemma":0.00003476284,"threshold_uncertainty_score":0.32552278},"labels":[],"label_agreement":null},{"id":"W2898936040","doi":"10.1128/msphere.00309-18","title":"Modeling Ebola Virus Transmission Using Ferrets","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; Université Laval","funders":"Canadian Institutes of Health Research; Government of Canada; Public Health Agency of Canada","keywords":"Virology; Ebola virus; Transmission (telecommunications); Ebolavirus; Virus; Biology; Computer science; Telecommunications","score_opus":0.07824712710191847,"score_gpt":0.37852833658598484,"score_spread":0.30028120948406634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898936040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91399896,0.00027533807,0.06649767,0.00016482908,0.000097351585,0.00014050078,0.0000014571632,0.00006599824,0.018757926],"genre_scores_gemma":[0.99503213,0.00003149721,0.0027662425,0.00014233918,0.0003749351,0.00000263262,0.0000029793882,0.000019863079,0.0016273537],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99930257,0.000021683905,0.000121258636,0.000159068,0.0001784919,0.0002169154],"domain_scores_gemma":[0.9995963,0.000005524657,0.000009842392,0.00014419996,0.0001131032,0.000131016],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000100477984,0.000080371676,0.00012314737,0.000037862017,0.000183185,0.000022790107,0.000038334074,0.000080542515,0.0019138145],"category_scores_gemma":[0.000011391072,0.00006249741,0.00006417823,0.0001648456,0.00004446321,0.00006840795,0.000020164123,0.00016140607,0.00018298611],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025123727,0.00015367479,0.0005712768,0.0000765375,0.00004520408,0.000065928725,0.00033531233,0.0010175646,0.8378365,0.00007551036,0.0008704577,0.15870078],"study_design_scores_gemma":[0.00071868376,0.00028316758,0.0002409089,0.00015559961,0.000035926423,0.00014016511,0.00009881096,0.9413718,0.042413417,0.00012365598,0.0143045625,0.00011327658],"about_ca_topic_score_codex":0.0007267145,"about_ca_topic_score_gemma":0.000060580318,"teacher_disagreement_score":0.9403543,"about_ca_system_score_codex":0.00005261541,"about_ca_system_score_gemma":0.000073344985,"threshold_uncertainty_score":0.9989986},"labels":[],"label_agreement":null},{"id":"W2902747809","doi":"10.1128/msphere.00525-18","title":"Tetrasodium EDTA Is Effective at Eradicating Biofilms Formed by Clinically Relevant Microorganisms from Patients’ Central Venous Catheters","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Central Venous Catheters and Hemodialysis","field":"Health Professions","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal University Hospital; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biofilm; Medicine; Antimicrobial; Antibiotics; Intensive care medicine; Colonization; Microbiology; Bacteria; Biology","score_opus":0.013210126853547173,"score_gpt":0.30334275385012355,"score_spread":0.2901326269965764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902747809","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927366,0.00023451378,0.00018953341,0.0007163997,0.001472773,0.0014127322,0.0007599465,0.00015415871,0.0023233686],"genre_scores_gemma":[0.99103737,0.00011076702,0.0014396326,0.00473069,0.00076630997,0.000093655246,0.00041955477,0.000104107705,0.0012979127],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9960968,0.00037293904,0.0009614958,0.00079051795,0.00037386158,0.001404425],"domain_scores_gemma":[0.99736416,0.0007125389,0.000570573,0.0006848048,0.00020682716,0.00046109123],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00030997262,0.00038192593,0.0006435979,0.000038278078,0.001520309,0.00002911657,0.0004446228,0.00046944182,0.004210434],"category_scores_gemma":[0.00021990783,0.0003285327,0.0003121212,0.00022821192,0.0002017665,0.00011011857,0.00025510282,0.0006767838,0.0023246473],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013425093,0.0019152254,0.55286634,0.000150394,0.0005722872,0.0000100325615,0.052038804,3.8964518e-7,0.095740125,0.000018634733,0.2602588,0.035086464],"study_design_scores_gemma":[0.017972818,0.012572734,0.44135985,0.0013390415,0.0014392689,0.0000055627797,0.00849082,0.00044861285,0.082111135,0.0012604295,0.42940545,0.0035942842],"about_ca_topic_score_codex":0.0016956402,"about_ca_topic_score_gemma":0.00059348665,"teacher_disagreement_score":0.16914664,"about_ca_system_score_codex":0.0008030583,"about_ca_system_score_gemma":0.00017675034,"threshold_uncertainty_score":0.9999167},"labels":[],"label_agreement":null},{"id":"W2903285205","doi":"10.1128/msphere.00427-18","title":"A Longitudinal Epidemiology Study of Meningococcal Carriage in Students 13 to 25 Years Old in Quebec","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Pfizer","keywords":"Carriage; Epidemiology; Meningococcal Infections; Meningococcal meningitis; Meningococcal disease; Longitudinal study; Medicine; Demography; Pediatrics; Neisseria meningitidis; Sociology; Biology; Internal medicine","score_opus":0.03221419556811469,"score_gpt":0.33245594313788424,"score_spread":0.30024174756976957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2903285205","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985485,0.00009256547,0.000006733378,0.000056409448,0.0006724944,0.00037780937,0.0000057035095,0.000016515636,0.0002232447],"genre_scores_gemma":[0.99810845,0.0000028961522,0.0000220209,0.000042255346,0.000059722854,0.000049337912,0.000005450275,0.0000090992935,0.001700782],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986523,0.00036886716,0.00041558125,0.00027236657,0.000012736851,0.00027819388],"domain_scores_gemma":[0.9995236,0.00011391216,0.00007717353,0.00022835558,0.000038196733,0.000018777875],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044256682,0.000115155824,0.00040454775,0.00011261065,0.00003502181,0.000005451664,0.00020015103,0.00016586133,0.0009494905],"category_scores_gemma":[0.00014045984,0.000106030064,0.00003434966,0.00025759148,0.000058051155,0.000048322283,0.00015715836,0.00017039754,0.00020726067],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017618596,0.00063073065,0.96970457,0.0000040975838,0.000054104632,0.000004291579,0.0024223025,0.000008873423,0.024448734,0.000075744,0.00089008233,0.0015802996],"study_design_scores_gemma":[0.0019918215,0.00093904836,0.99170333,0.000030564366,0.00001078541,0.0000052235896,0.0012273915,6.446635e-7,0.00056255487,0.000024086057,0.0034064322,0.00009813591],"about_ca_topic_score_codex":0.15243591,"about_ca_topic_score_gemma":0.5152389,"teacher_disagreement_score":0.36280295,"about_ca_system_score_codex":0.000054692115,"about_ca_system_score_gemma":0.000022495251,"threshold_uncertainty_score":0.99996376},"labels":[],"label_agreement":null},{"id":"W2903368355","doi":"10.1128/msphere.00564-18","title":"Vitamin E Increases Antimicrobial Sensitivity by Inhibiting Bacterial Lipocalin Antibiotic Binding","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Vitamin C and Antioxidants Research","field":"Nursing","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Queen's University; Queen's University Belfast; Cystic Fibrosis Canada","keywords":"Antimicrobial; Lipocalin; Antibiotics; Sensitivity (control systems); Microbiology; Chemistry; Antibiotic resistance; Biology; Biochemistry","score_opus":0.012622503244202762,"score_gpt":0.26845161994971856,"score_spread":0.2558291167055158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2903368355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966332,0.00004734665,0.00013868882,0.0003303997,0.0008583172,0.00021517865,0.00016625167,0.00017681265,0.0014338233],"genre_scores_gemma":[0.9967953,0.000014475062,0.0006271102,0.00022563495,0.0015676344,0.0000010460564,0.00008699201,0.0000624335,0.00061937154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977352,0.00036514923,0.00031838552,0.00051305507,0.0003198297,0.0007483509],"domain_scores_gemma":[0.99914736,0.00020739014,0.00011253082,0.00024096179,0.00012340058,0.00016835422],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005628021,0.0002617841,0.00032798192,0.000075916934,0.00052159454,0.00026477926,0.00015272282,0.00019338199,0.0005763416],"category_scores_gemma":[0.00035155943,0.0002566282,0.000105793864,0.0003650662,0.0003555887,0.00030537532,0.00016284581,0.00028581728,0.00084269024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016830176,0.00018172526,0.00652618,0.00008172821,0.000018671695,0.000048647336,0.00009213151,4.2793934e-7,0.937189,0.0000055718315,0.028364813,0.027322812],"study_design_scores_gemma":[0.0010285536,0.00025280064,0.0031813032,0.00048533943,0.000026935777,0.00008258311,0.00015667587,0.00045843623,0.9875786,0.000005984859,0.0063466853,0.00039611183],"about_ca_topic_score_codex":0.00068481965,"about_ca_topic_score_gemma":0.0002385023,"teacher_disagreement_score":0.050389603,"about_ca_system_score_codex":0.00008326773,"about_ca_system_score_gemma":0.000040283823,"threshold_uncertainty_score":0.9999886},"labels":[],"label_agreement":null},{"id":"W2911838180","doi":"10.1128/msphere.00002-19","title":"A CRISPR Interference Platform for Efficient Genetic Repression in <i>Candida albicans</i>","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Banting Research Foundation; University of Guelph","keywords":"CRISPR; CRISPR interference; Biology; Candida albicans; Cas9; Psychological repression; Virulence; Gene; RNA interference; Repressor; Genetics; Pathogen; Genetic screen; Trans-activating crRNA; Corpus albicans; Fungal pathogen; Human pathogen; Computational biology; RNA; Gene expression; Mutant","score_opus":0.00633170988995219,"score_gpt":0.2769470367006662,"score_spread":0.27061532681071404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911838180","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96594,0.0009893095,0.03060491,0.000028768487,0.00022937237,0.00036513348,0.000009812978,0.000011272792,0.0018213971],"genre_scores_gemma":[0.9969133,0.000042339856,0.0016821394,0.00008960486,0.00007353865,0.000052633197,0.000023675646,0.000021082811,0.0011016489],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991948,0.000007709819,0.00017038896,0.00032421338,0.00006720921,0.00023567396],"domain_scores_gemma":[0.9995577,0.000012451043,0.000031091648,0.00032170615,0.00002637743,0.000050692597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007032904,0.00012313704,0.00012198447,0.000020033118,0.000019874784,0.000014614245,0.00015115038,0.00010002098,0.00009824175],"category_scores_gemma":[0.000025492916,0.00011433619,0.000060680068,0.00005826543,0.000014048149,0.0000013344252,0.00007799251,0.00006481242,0.000016758047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021519014,0.000083108716,0.014318331,0.00012377213,0.000023439723,0.000003391023,0.00023839972,0.04696622,0.91898245,0.000040595438,0.0022040645,0.016801035],"study_design_scores_gemma":[0.0038031596,0.0010505874,0.034777638,0.0002880569,0.000027230753,0.000031031643,0.000597785,0.028474862,0.83472145,0.0001430054,0.095214956,0.00087026175],"about_ca_topic_score_codex":0.000030329116,"about_ca_topic_score_gemma":0.00009001584,"teacher_disagreement_score":0.093010895,"about_ca_system_score_codex":0.000014404451,"about_ca_system_score_gemma":0.00002898787,"threshold_uncertainty_score":0.46624944},"labels":[],"label_agreement":null},{"id":"W2917564235","doi":"10.1128/msphere.00598-18","title":"MAP Kinase Regulation of the <i>Candida albicans</i> Pheromone Pathway","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Kinase; Mitogen-activated protein kinase; Mating of yeast; Mating; Cell biology; Candida albicans; MAPK14; Signal transduction; Saccharomyces cerevisiae; Genetics; Yeast; MAP kinase kinase kinase; Protein kinase A","score_opus":0.004883883452991722,"score_gpt":0.20967289964182628,"score_spread":0.20478901618883455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917564235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876991,0.00065032166,0.000037289563,0.00020174265,0.00016850799,0.00019043511,0.000022524098,0.000003822227,0.01102624],"genre_scores_gemma":[0.9780652,0.000018800074,0.00011761535,0.00008791017,0.0000908924,0.0000070961883,0.00002679246,0.000013611568,0.021572068],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993133,0.000051212544,0.00011513606,0.00018420791,0.00018267935,0.00015347317],"domain_scores_gemma":[0.99940336,0.0000059922404,0.00004865379,0.0004341428,0.00006764163,0.00004020064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000836836,0.00008067554,0.00008165372,0.000006272582,0.000034353136,0.000008917537,0.00021184674,0.00008655814,0.00062348443],"category_scores_gemma":[0.000012286103,0.00005655577,0.000074923264,0.00006871512,0.00005549061,0.000001500596,0.00013210424,0.00006673776,0.000083294486],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044969496,0.000030690015,0.0077918875,0.000031437416,0.000014531303,2.6468808e-7,0.000017885346,0.00014355361,0.9872155,0.00008329602,0.002178682,0.002447272],"study_design_scores_gemma":[0.00033460604,0.00013236007,0.010399507,0.00001691887,0.0000036637637,0.0000017257,0.000039088387,0.00007521294,0.9243515,0.00010740566,0.064456776,0.0000812281],"about_ca_topic_score_codex":0.000039844363,"about_ca_topic_score_gemma":0.00006753905,"teacher_disagreement_score":0.06286403,"about_ca_system_score_codex":0.0000070248366,"about_ca_system_score_gemma":0.00006587343,"threshold_uncertainty_score":0.6826717},"labels":[],"label_agreement":null},{"id":"W2917566537","doi":"10.1128/msphere.00043-19","title":"Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Genome Center, University of California, Davis; University of California, Davis; Alfred P. Sloan Foundation","keywords":"Ecological succession; Microbial population biology; Ecology; Nutrient cycle; Biology; Crustose; Coralline algae; Habitat; Operational taxonomic unit; Nutrient; Metagenomics; Algae; 16S ribosomal RNA","score_opus":0.012405620383350363,"score_gpt":0.2525878168646383,"score_spread":0.24018219648128797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917566537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964831,0.000071733404,0.000012850292,0.00007055962,0.00017074062,0.00015484288,0.000005982683,0.000015239537,0.0030149822],"genre_scores_gemma":[0.9987886,0.0000045761067,0.0003405042,0.0001589353,0.000008224594,0.000003627813,0.000023135322,0.0000076156152,0.00066476094],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990745,0.00044715666,0.00016188249,0.00011645061,0.00005210982,0.00014786336],"domain_scores_gemma":[0.9993954,0.00023225359,0.00006142089,0.00027169145,0.000003712206,0.000035548062],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025797106,0.0000927913,0.00015867683,0.000013747007,0.0003313361,0.000009789331,0.00020247388,0.000092801405,0.0047895443],"category_scores_gemma":[0.000023380218,0.00008295773,0.000051242852,0.00006495433,0.00014215322,0.00012070303,0.00039851476,0.00025447636,0.00013463454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011533302,0.00014593631,0.07530125,0.0000069237635,0.000009283151,5.934587e-7,0.002337087,0.000029637524,0.9212741,0.000042025236,0.00064938597,0.00008840989],"study_design_scores_gemma":[0.0024075839,0.000880598,0.32538626,0.000120081895,0.000037959926,0.000017942302,0.0058163744,0.00020963007,0.6533076,0.0014096143,0.009896061,0.0005103056],"about_ca_topic_score_codex":0.0011321238,"about_ca_topic_score_gemma":0.0004979246,"teacher_disagreement_score":0.26796654,"about_ca_system_score_codex":0.000043782984,"about_ca_system_score_gemma":0.0000075442795,"threshold_uncertainty_score":0.9961202},"labels":[],"label_agreement":null},{"id":"W2919872889","doi":"10.1128/msphere.00102-19","title":"Loss of the Two-Component System TctD-TctE in <i>Pseudomonas aeruginosa</i> Affects Biofilm Formation and Aminoglycoside Susceptibility in Response to Citric Acid","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Cystic Fibrosis Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Health Canada; University of Ottawa","keywords":"Citric acid; Pseudomonas aeruginosa; Biofilm; Tobramycin; Microbiology; Aminoglycoside; Mutant; Chemistry; Biochemistry; Biology; Bacteria; Antibiotics; Gene; Genetics","score_opus":0.005240820347551511,"score_gpt":0.21017959199702904,"score_spread":0.20493877164947752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2919872889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860775,0.00023150309,0.000011341332,0.00016245112,0.00018621661,0.00056783046,0.000017999057,0.0000072527614,0.00020765653],"genre_scores_gemma":[0.9995751,0.0000137127845,0.00020691752,0.00008964314,0.0000326405,0.0000073651795,0.000013754788,0.000011945553,0.000048948805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99881065,0.00027691206,0.0002723117,0.00029569885,0.0001098656,0.00023457404],"domain_scores_gemma":[0.9993747,0.000028091523,0.000104985505,0.0004073348,0.00003366831,0.000051203482],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004733444,0.00014683515,0.00021584344,0.000046346126,0.000029357137,0.000019610608,0.0001306294,0.00012773761,0.0000046082787],"category_scores_gemma":[0.000050840816,0.000115398,0.000057591453,0.00023196956,0.000041178613,0.0000097221655,0.00016343273,0.000090050635,0.000007650161],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084822095,0.000029714043,0.052768365,0.00010314124,0.0000049211358,0.0000035023322,0.000108004635,0.00005461678,0.94517994,0.000017708155,0.000034305885,0.00084753515],"study_design_scores_gemma":[0.001086762,0.00016656003,0.20029724,0.00015206444,0.0000052503824,0.00001844312,0.00023558392,0.000100353456,0.79719704,0.0000022019456,0.00059641676,0.00014210775],"about_ca_topic_score_codex":0.00020097634,"about_ca_topic_score_gemma":0.0009856746,"teacher_disagreement_score":0.14798294,"about_ca_system_score_codex":0.000058947164,"about_ca_system_score_gemma":0.000040149345,"threshold_uncertainty_score":0.47057936},"labels":[],"label_agreement":null},{"id":"W2928153265","doi":"10.1128/mspheredirect.00157-19","title":"Marine RNA Virus Quasispecies Are Distributed throughout the Oceans","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; RNA; Viral quasispecies; RNA virus; Viral evolution; Genome; Nonsynonymous substitution; Virus; Biological dispersal; Marine bacteriophage; Genetics; Evolutionary biology; Gene; Population","score_opus":0.00811958421851627,"score_gpt":0.23418649074811382,"score_spread":0.22606690652959754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2928153265","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9574672,0.000029881177,0.00008721572,0.0012917545,0.00036362285,0.00016214284,0.00009887301,0.00004671631,0.040452577],"genre_scores_gemma":[0.9809483,0.000041995052,0.00012784422,0.0004922262,0.00005658261,0.000005366921,0.00002957646,0.000012156362,0.01828595],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99939257,0.000024037563,0.00011551259,0.00018166607,0.000094711024,0.00019152914],"domain_scores_gemma":[0.99955714,0.00002843786,0.00006494127,0.0003076128,0.0000055301152,0.000036333215],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00004191773,0.000105286534,0.00009952533,0.0000029701189,0.00013581534,0.000062641586,0.0002314227,0.000040666728,0.056889813],"category_scores_gemma":[0.000008550255,0.000069384674,0.000071934264,0.00011659304,0.000083787236,0.00016733549,0.00023698587,0.00014226057,0.006935661],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048269914,0.0003182939,0.17151396,0.000017566586,0.00007705718,0.000015962753,0.00083402416,0.0008115398,0.59711826,0.0003258119,0.2048928,0.02402646],"study_design_scores_gemma":[0.00012506524,0.00002214242,0.5083886,0.000006807718,0.000010183645,0.0000084721605,0.00047341853,0.000063535954,0.0034252242,0.000060481445,0.48730743,0.000108641776],"about_ca_topic_score_codex":0.0014662177,"about_ca_topic_score_gemma":0.0028365504,"teacher_disagreement_score":0.593693,"about_ca_system_score_codex":0.0000910481,"about_ca_system_score_gemma":0.0000033248327,"threshold_uncertainty_score":0.99383754},"labels":[],"label_agreement":null},{"id":"W2949221602","doi":"10.1128/msphere.00511-17","title":"Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Canadian Institute for Advanced Research","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; National Science Foundation","keywords":"Staphylococcus saprophyticus; Biology; Virulence; Bacterial adhesin; Microbiology; Microbiome; Pathogen; Genetics; Gene; Staphylococcus aureus; Bacteria; Staphylococcus","score_opus":0.028168724976949923,"score_gpt":0.23468661522905834,"score_spread":0.20651789025210843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949221602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734765,0.00007084994,0.000005032942,0.00024076772,0.00006307336,0.00010543633,0.00001646173,0.000011979926,0.0021387697],"genre_scores_gemma":[0.9995354,0.000011939096,0.00021108772,0.000007936623,0.000038227972,0.0000035717235,0.000007208668,4.949022e-7,0.00018414023],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999501,0.000017847324,0.00013303658,0.00012991867,0.00008225824,0.00013596183],"domain_scores_gemma":[0.99973655,0.000022588587,0.00012541751,0.0000680378,0.000020581265,0.00002682764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009222968,0.000062732695,0.000107384076,0.0000054161105,0.00013140257,0.00004771782,0.00018359051,0.000054993132,0.00014538091],"category_scores_gemma":[0.000034208693,0.000025186659,0.00003898357,0.00007282199,0.00003578867,0.00008318789,0.000049267343,0.000062546686,0.00001307578],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037880414,0.00009488789,0.029003058,0.000014864734,0.000008768827,0.0000058567284,0.00014369012,0.0000470871,0.7736185,0.00041463765,0.000083856314,0.1965269],"study_design_scores_gemma":[0.00037422503,0.0004186398,0.9678156,0.00011651068,0.000007908514,9.637653e-7,0.00083516707,0.0016763045,0.025956284,0.0007911142,0.0018074523,0.00019983792],"about_ca_topic_score_codex":0.0005731258,"about_ca_topic_score_gemma":0.0014425964,"teacher_disagreement_score":0.93881255,"about_ca_system_score_codex":0.00001570834,"about_ca_system_score_gemma":0.0000056328263,"threshold_uncertainty_score":0.1591819},"labels":[],"label_agreement":null},{"id":"W2949410576","doi":"10.1128/mspheredirect.00233-17","title":"Gene Knockout Shows That PML (TRIM19) Does Not Restrict the Early Stages of HIV-1 Infection in Human Cell Lines","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Trois-Rivières","funders":"","keywords":"Gene; Human immunodeficiency virus (HIV); Gene knockout; Biology; Virology; Genetics; Cell; Computational biology","score_opus":0.029337935320665195,"score_gpt":0.28746809798446965,"score_spread":0.25813016266380445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949410576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99495846,0.00086225435,0.000004997533,0.00028013383,0.00017358089,0.00026886773,0.00013302204,0.000020592242,0.0032980652],"genre_scores_gemma":[0.9778088,0.0003049613,0.000016286345,0.000013014751,0.000037264697,0.000033902998,0.00005722366,0.000010761744,0.021717828],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991396,0.0001633529,0.00017111666,0.00019792086,0.00004830306,0.00027968935],"domain_scores_gemma":[0.9991583,0.00009189482,0.00014024977,0.0005488779,0.0000418499,0.000018813405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017087015,0.00012806384,0.00019437031,0.000042715586,0.00042231538,0.00004308197,0.0002933774,0.00015098492,0.000583544],"category_scores_gemma":[0.000053862877,0.00007125226,0.000076100434,0.000038328075,0.00022455459,0.00009725805,0.000128249,0.00024815646,0.00037112192],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008578127,0.00018898096,0.7316074,0.000020853078,0.00006784339,0.000015710108,0.0002746762,0.0000039753354,0.26178265,0.000031754713,0.0014385175,0.0044818707],"study_design_scores_gemma":[0.00095239986,0.00015912618,0.5123516,0.0000144036485,0.000013093151,0.0000019401812,0.00004940603,2.2043982e-7,0.4818663,0.000038208454,0.004493534,0.000059794645],"about_ca_topic_score_codex":0.005292829,"about_ca_topic_score_gemma":0.0042235143,"teacher_disagreement_score":0.22008365,"about_ca_system_score_codex":0.000031226973,"about_ca_system_score_gemma":0.000041806714,"threshold_uncertainty_score":0.800121},"labels":[],"label_agreement":null},{"id":"W2949994196","doi":"10.1128/msphere.00211-18","title":"Persistence of Resident and Transplanted Genotypes of the Undomesticated Yeast Saccharomyces paradoxus in Forest Soil","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Yeast; Saccharomyces; Abundance (ecology); Domestication; Persistence (discontinuity); Biological dispersal; Saccharomyces cerevisiae; Soil water; Botany; Ecology; Genetics","score_opus":0.018507989649687837,"score_gpt":0.2010500471543478,"score_spread":0.18254205750465996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949994196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99898714,0.000081285056,7.6807754e-7,0.0003087111,0.000013952631,0.00005047843,0.000015197994,0.0000037676034,0.00053872686],"genre_scores_gemma":[0.99972916,0.000041201085,0.000013259124,0.000029129285,0.000011076282,0.0000010948534,0.0000033751649,2.456475e-7,0.00017146776],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995979,0.000046304955,0.00012423447,0.00008603257,0.000081617865,0.00006387989],"domain_scores_gemma":[0.9998228,0.000045660825,0.000052566895,0.000030363924,0.00003123259,0.000017379003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000052523024,0.000041574473,0.00009115416,0.000004238119,0.000042086533,0.0000056245035,0.00009298353,0.000025096017,0.00024872867],"category_scores_gemma":[0.000016576436,0.000013798712,0.00003421972,0.00021064405,0.00014663555,0.000023817729,0.000011212715,0.00002483675,0.000002792079],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010892979,0.00005393223,0.3487359,0.000026499203,0.00002722442,0.0000016518707,0.0011051573,0.00005122144,0.6455542,0.00018101327,0.000041903113,0.004112397],"study_design_scores_gemma":[0.00011964935,0.00007924312,0.98223007,0.000040781008,0.00002049088,0.0000018737742,0.0013346063,0.00031734598,0.015589505,0.00015574548,0.00007044357,0.000040266634],"about_ca_topic_score_codex":0.0006776464,"about_ca_topic_score_gemma":0.017338717,"teacher_disagreement_score":0.63349414,"about_ca_system_score_codex":0.000003571949,"about_ca_system_score_gemma":0.0000035662752,"threshold_uncertainty_score":0.96754116},"labels":[],"label_agreement":null},{"id":"W2951248990","doi":"10.1128/mspheredirect.00271-17","title":"Fungus Causing White-Nose Syndrome in Bats Accumulates Genetic Variability in North America with No Sign of Recombination","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Winnipeg; University of Saskatchewan; University of New Brunswick; University of Toronto","funders":"","keywords":"Biology; Population; Wildlife; Evolutionary biology; Population genetics; Genetic variation; Zoology; Ecology; Genetic variability; Genotype; Genetics; Demography","score_opus":0.018477083527908333,"score_gpt":0.2249486850626482,"score_spread":0.20647160153473987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951248990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822205,0.00005911464,0.0000012687085,0.00048526743,0.00007874376,0.00016309608,0.00000826245,0.000010805025,0.0009714042],"genre_scores_gemma":[0.99963605,0.000033089007,0.000148028,0.000039698127,0.000014470549,0.0000145806425,0.000011494505,6.142981e-7,0.0001019716],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991918,0.00012907632,0.00018440657,0.00024200608,0.000048591257,0.00020409118],"domain_scores_gemma":[0.99949586,0.00019922487,0.00014162132,0.00009041216,0.000049488826,0.000023410434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020115658,0.00010036376,0.0002302773,0.000006974152,0.00017989943,0.000014524223,0.00016243514,0.00010481736,0.0002798619],"category_scores_gemma":[0.00019072177,0.000040809035,0.000023448623,0.00013212152,0.0001955785,0.00009199697,0.00008021826,0.00011244999,0.000015175691],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044935707,0.00010710686,0.9831633,0.000008345996,0.000009719294,0.00002319091,0.00009237022,0.00005921726,0.00072942086,0.0000029076589,0.000020435986,0.01573904],"study_design_scores_gemma":[0.00017853506,0.0003368433,0.9988091,0.000018725548,0.000005505559,0.000004893027,0.000115599425,0.000101103156,0.000038584152,0.00019401041,0.00009903698,0.00009804376],"about_ca_topic_score_codex":0.00091845344,"about_ca_topic_score_gemma":0.051737033,"teacher_disagreement_score":0.050818577,"about_ca_system_score_codex":0.000025006319,"about_ca_system_score_gemma":0.0000072793027,"threshold_uncertainty_score":0.9655663},"labels":[],"label_agreement":null},{"id":"W2951453703","doi":"10.1128/msphere.00299-19","title":"mSphere of Influence: Start with an Interesting Biological Phenomenon","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Candida albicans; Phenomics; Biology; Functional genomics; Computational biology; Genetics; Genomics; Genome; Gene","score_opus":0.023389580510655043,"score_gpt":0.2771219344224899,"score_spread":0.25373235391183485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951453703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98265547,0.00022765218,0.00005547437,0.000048661914,0.00002846673,0.000295245,0.000005381507,0.000052588024,0.016631065],"genre_scores_gemma":[0.99656314,0.000013650522,0.0018695892,0.00016917552,0.000038565686,0.0000040895316,0.000010395124,0.000014298236,0.0013170952],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99898285,0.00004230004,0.00023972192,0.00030616217,0.00020127169,0.00022767],"domain_scores_gemma":[0.999178,0.000051229752,0.0000890753,0.0004238248,0.00014492021,0.00011296209],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016732735,0.00013616947,0.00033700574,0.000012922063,0.000030161642,0.0000098327,0.00010939154,0.00009523953,0.0020142177],"category_scores_gemma":[0.00007030526,0.00008757508,0.00004982365,0.0001470225,0.00013380968,0.00012131866,0.00003484261,0.00019350398,0.00009339665],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096995983,0.00015075857,0.9635002,0.00016913428,0.000028285971,0.000016423282,0.00023763855,0.000024838031,0.030415932,0.00015661388,0.000049045055,0.004281168],"study_design_scores_gemma":[0.0013151162,0.003862118,0.98648256,0.0005005507,0.00003120174,0.000013397874,0.0036786632,0.00012138334,0.0025002635,0.00021486483,0.001086663,0.00019322062],"about_ca_topic_score_codex":0.00007434635,"about_ca_topic_score_gemma":0.00014969107,"teacher_disagreement_score":0.02791567,"about_ca_system_score_codex":0.000040746476,"about_ca_system_score_gemma":0.000097418066,"threshold_uncertainty_score":0.9988981},"labels":[],"label_agreement":null},{"id":"W2951933896","doi":"10.1128/msphere.00285-19","title":"Agent-Based Modeling Demonstrates How Local Chemotactic Behavior Can Shape Biofilm Architecture","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biofilm; Biological system; Bacteria; Nanotechnology; Biochemical engineering; Mutant; Distributed computing; Computer science; Microbiology; Biology; Biophysics; Chemistry; Materials science; Engineering; Biochemistry; Genetics","score_opus":0.009890566383931921,"score_gpt":0.2142584652671539,"score_spread":0.20436789888322196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951933896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99702823,0.00020979282,0.0011393201,0.0005120259,0.00027524633,0.00024494363,0.00003346898,0.000032724067,0.0005242174],"genre_scores_gemma":[0.99660575,0.000009408783,0.0020717958,0.00040771792,0.00019548478,0.000008345734,0.00022114828,0.00004403508,0.00043633225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886686,0.000038460177,0.0001480056,0.00044408513,0.00012097299,0.00038163658],"domain_scores_gemma":[0.9993787,0.0000063260027,0.00006486767,0.00037133903,0.000057285844,0.000121470584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000636364,0.00024230525,0.00018936131,0.000021065323,0.00007915075,0.000081174774,0.0001551074,0.00026943735,0.0002191845],"category_scores_gemma":[0.000013245285,0.00022027547,0.00013355611,0.00007744272,0.000060798702,0.0000039959605,0.00006066487,0.000166206,0.000029556822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000063485255,0.00004282109,0.0024737292,0.000027366335,0.0000232077,0.00000877009,0.000010326399,0.0012965604,0.9769203,0.0000057229418,0.00012396842,0.019003741],"study_design_scores_gemma":[0.0011670949,0.0003976128,0.00092376233,0.00006147941,0.00007917918,0.000055092656,0.00026158543,0.032699272,0.95760465,0.000008513435,0.006065026,0.0006767407],"about_ca_topic_score_codex":0.0000764885,"about_ca_topic_score_gemma":0.00014686436,"teacher_disagreement_score":0.03140271,"about_ca_system_score_codex":0.000020504527,"about_ca_system_score_gemma":0.0001143198,"threshold_uncertainty_score":0.8982573},"labels":[],"label_agreement":null},{"id":"W2953063653","doi":"10.1128/msphere.00163-19","title":"The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":131,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Advancing Translational Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; Government of Canada; National Institutes of Health; National Cancer Institute; Canadian Institutes of Health Research","keywords":"Biology; Polymerase chain reaction; Genetics; Polymerase; 16S ribosomal RNA; Sequence (biology); Gene; Computational biology; Molecular biology","score_opus":0.028099080801908805,"score_gpt":0.30719756775925816,"score_spread":0.27909848695734935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953063653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99751806,0.0015715,0.000010709828,0.000022695263,0.000023055052,0.00008643357,0.00012870629,3.030824e-7,0.0006385435],"genre_scores_gemma":[0.99896985,0.0007299896,0.00013432432,0.000007590491,0.000014713415,0.0000018518224,0.000038805734,0.000005634883,0.00009723555],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954885,0.000022465172,0.00015421065,0.00014757743,0.000049034057,0.00007784051],"domain_scores_gemma":[0.999338,0.000020123227,0.00010458415,0.00048689713,0.000035902696,0.000014522693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010681624,0.00006339286,0.00010661188,0.0000054286647,0.000014025338,0.000003409198,0.00017258376,0.000041105952,0.000011391975],"category_scores_gemma":[0.000021345219,0.000044425786,0.00002675462,0.000040210216,0.00006639608,7.731765e-7,0.00010633039,0.000024047818,8.572362e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055037057,0.000025249718,0.14789936,0.000011238663,0.000039849372,8.100719e-8,0.0000354895,0.000049660222,0.8494425,0.00005703739,0.000071148614,0.0023133461],"study_design_scores_gemma":[0.00048161618,0.00029767255,0.43723655,0.00002006533,0.000012007205,0.0000037936534,0.0001449498,0.00015877825,0.5608625,0.00016250595,0.00051847857,0.00010109694],"about_ca_topic_score_codex":0.00043219887,"about_ca_topic_score_gemma":0.000066525696,"teacher_disagreement_score":0.2893372,"about_ca_system_score_codex":0.000004919602,"about_ca_system_score_gemma":0.00004017529,"threshold_uncertainty_score":0.18116309},"labels":[],"label_agreement":null},{"id":"W2953319053","doi":"10.1128/msphere.00436-18","title":"Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"National Aeronautics and Space Administration; NASA Astrobiology Institute; National Institute of Food and Agriculture; Deutsche Forschungsgemeinschaft; University of Wisconsin-Madison; National Science Foundation","keywords":"Bog; Redox; Eutrophication; Electron transfer; Carbon cycle; Environmental chemistry; Carbon fibers; Peat; Environmental science; Ecology; Anaerobic respiration; Chemistry; Biology; Anaerobic exercise; Photochemistry; Ecosystem; Physiology; Nutrient","score_opus":0.0073372239661014,"score_gpt":0.21259024853218,"score_spread":0.2052530245660786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953319053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975977,0.00007510102,0.00020591996,0.00043298423,0.000101671845,0.0005528249,0.000015617208,0.00002738038,0.0009908197],"genre_scores_gemma":[0.99643755,0.000010710788,0.00013249571,0.00031888994,0.000050942883,0.000011533859,0.00013216681,0.000012980853,0.0028927128],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988619,0.00008444697,0.00020765408,0.00033300335,0.00021392333,0.00029904617],"domain_scores_gemma":[0.9996957,0.000009504705,0.000023424662,0.00019034577,0.0000103797,0.00007062517],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00028024887,0.0001264446,0.00012319257,0.000023854716,0.000045546603,0.00004169084,0.00012839895,0.000120412406,0.009020605],"category_scores_gemma":[0.0000074566065,0.00011208434,0.000031669933,0.00019460061,0.00001887701,0.00028229138,0.000021849668,0.00011565011,0.0011637467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071808965,0.000067802815,0.038537804,0.000006589346,0.0000016883007,0.0000021583605,0.0003501882,0.0011053678,0.9585599,0.00012395607,0.0006965011,0.00047628235],"study_design_scores_gemma":[0.0014508852,0.0007444501,0.07362834,0.000022493457,0.00001601609,0.0000025297256,0.00009238244,0.0019505956,0.7130646,0.00023425625,0.2082855,0.00050794706],"about_ca_topic_score_codex":0.00045197213,"about_ca_topic_score_gemma":0.021219354,"teacher_disagreement_score":0.24549524,"about_ca_system_score_codex":0.00018988183,"about_ca_system_score_gemma":0.000008878479,"threshold_uncertainty_score":0.99961394},"labels":[],"label_agreement":null},{"id":"W2954088088","doi":"10.1128/msphere.00313-19","title":"mSphere of Influence: Evolutionary Strategies To Sensitize Drug-Resistant Pathogens","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Antimicrobial; Drug resistance; Drug; Antimicrobial drug; Antibiotics; Antibiotic resistance; Collateral damage; Collateral; Microbiology; Biology; Genetics; Computational biology; Pharmacology; Psychology; Business; Criminology","score_opus":0.0023885851737528944,"score_gpt":0.21457957617859352,"score_spread":0.21219099100484062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2954088088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98754305,0.00072847295,0.0005511217,0.00013041818,0.0001245963,0.00023141514,0.00008579479,0.00001848082,0.010586631],"genre_scores_gemma":[0.9899794,0.000047672354,0.0030712665,0.0002640876,0.000061964376,0.000008234121,0.00007976082,0.000021764563,0.006465844],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998959,0.000052411426,0.00024082429,0.0003230456,0.0001829001,0.00024183818],"domain_scores_gemma":[0.99917144,0.00000962514,0.00007528547,0.00045172212,0.00019109152,0.00010081464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009255156,0.0001573028,0.00016818372,0.000018689781,0.000043115568,0.000015905214,0.00017384073,0.00012665208,0.0002358781],"category_scores_gemma":[0.000027604383,0.00015638214,0.00009541293,0.00013375297,0.00006296362,0.000005016566,0.00011878779,0.00006937535,0.0001491067],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012733552,0.00005109328,0.009778246,0.00006200482,0.000044626475,0.000003903772,0.00010418142,0.021187669,0.95960206,0.0010470034,0.0076043154,0.0003875813],"study_design_scores_gemma":[0.0031069668,0.0019382258,0.63524455,0.0002705209,0.00011780002,0.00008471296,0.012699363,0.0035929729,0.083885826,0.0022342224,0.2547528,0.0020720386],"about_ca_topic_score_codex":0.00005993469,"about_ca_topic_score_gemma":0.0002732133,"teacher_disagreement_score":0.8757162,"about_ca_system_score_codex":0.000020371692,"about_ca_system_score_gemma":0.00019462436,"threshold_uncertainty_score":0.6377078},"labels":[],"label_agreement":null},{"id":"W2954624981","doi":"10.1128/msphere.00393-19","title":"Anti-Factor H Antibody Reactivity in Young Adults Vaccinated with a Meningococcal Serogroup B Vaccine Containing Factor H Binding Protein","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; McGill University Health Centre; Dalhousie University; BC Children's Hospital; Nova Scotia Health Authority; Izaak Walton Killam Health Centre","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Sanofi Pasteur; Sanofi; National Institutes of Health; National Center for Research Resources; Newcastle University; GlaxoSmithKline; Government of Canada; Akershus Universitetssykehus; National Jewish Health; University of California, San Francisco; Canadian Immunization Research Network; Pfizer","keywords":"Medicine; Immunology; Antibody; Autoantibody; Vaccination; Meningococcal disease; Immunization; Meningitis; Neisseria meningitidis; Meningococcal meningitis; Meningococcal vaccine; Virology; Biology; Bacteria","score_opus":0.008451327692031572,"score_gpt":0.24142612561907242,"score_spread":0.23297479792704084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2954624981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975661,0.00010086104,0.000023806062,0.000053510954,0.00052650477,0.0010055447,0.00005071071,0.00018046767,0.0004925071],"genre_scores_gemma":[0.99871194,0.000009080151,0.00004996862,0.000006977654,0.000040514155,0.0000500887,0.00014848285,0.00004366749,0.0009392648],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99839115,0.00017397653,0.00034554407,0.00051107805,0.000029604511,0.00054864003],"domain_scores_gemma":[0.99927795,0.000067076384,0.00020481847,0.00032449243,0.000090453854,0.000035185312],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012677711,0.00032879002,0.0005687306,0.00012847214,0.00014349521,0.000052972882,0.0001655373,0.0003423911,0.0027868932],"category_scores_gemma":[0.000035484038,0.00025866373,0.00007082999,0.00038493556,0.000016416972,0.00039321807,0.000084864725,0.0005263996,0.00037602315],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070553395,0.00011936128,0.43093607,0.000028015362,0.00007001249,0.000004147403,0.0002409684,0.0000014360504,0.5668923,0.00001960884,0.000008370248,0.0009741549],"study_design_scores_gemma":[0.006975932,0.0010604835,0.80997646,0.0004240934,0.00001939836,0.00010074026,0.0006884228,0.00002197589,0.1788038,0.000002959597,0.0014498817,0.00047587816],"about_ca_topic_score_codex":0.0020518254,"about_ca_topic_score_gemma":0.0021163228,"teacher_disagreement_score":0.38808852,"about_ca_system_score_codex":0.00009197385,"about_ca_system_score_gemma":0.00005461596,"threshold_uncertainty_score":0.9999865},"labels":[],"label_agreement":null},{"id":"W2958753493","doi":"10.1128/msphere.00320-19","title":"AIDS Vaccine Research Subcommittee (AVRS) Consultation: Early-Life Immunization Strategies against HIV Acquisition","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Immunization; Context (archaeology); HIV vaccine; Human immunodeficiency virus (HIV); Adjuvant; AIDS Vaccines; Medicine; Immunology; Vaccination; Immune system; Virology; Vaccine trial; Biology","score_opus":0.020211584670312862,"score_gpt":0.2977671442031419,"score_spread":0.277555559532829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2958753493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9715986,0.0025622356,0.00011770615,0.0006207619,0.00019054206,0.0005833139,0.00007733207,0.00009976968,0.024149684],"genre_scores_gemma":[0.9837947,0.00020093485,0.00009143718,0.00007353036,0.000042165317,0.000062153755,0.0016168522,0.00002321527,0.014094994],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981759,0.0005819441,0.00025829198,0.00032265694,0.00013053046,0.00053065433],"domain_scores_gemma":[0.9987199,0.00031936698,0.00006026497,0.0004491488,0.00039613424,0.000055231703],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00043690272,0.00016570359,0.00022836137,0.00011499688,0.00034820905,0.000097428725,0.00025571714,0.00022509815,0.0073840367],"category_scores_gemma":[0.00009799405,0.00014298099,0.00005940711,0.0004087876,0.00011427171,0.00030512942,0.00010797255,0.00044826008,0.02780463],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021352463,0.0010616884,0.29400194,0.00021989408,0.0011730763,0.00007765609,0.004574622,0.00039064093,0.55193394,0.019433394,0.099612124,0.025385773],"study_design_scores_gemma":[0.025710018,0.0037245536,0.71715814,0.00032241418,0.00008318545,0.000046845715,0.029734131,0.00007955782,0.05538926,0.0019448383,0.16474111,0.0010659341],"about_ca_topic_score_codex":0.00018017765,"about_ca_topic_score_gemma":0.0000501742,"teacher_disagreement_score":0.4965447,"about_ca_system_score_codex":0.000091435315,"about_ca_system_score_gemma":0.00023979013,"threshold_uncertainty_score":0.99352336},"labels":[],"label_agreement":null},{"id":"W2969520863","doi":"10.1128/msphere.00408-19","title":"Single-Strand Annealing Plays a Major Role in Double-Strand DNA Break Repair following CRISPR-Cas9 Cleavage in <i>Leishmania</i>","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"CRISPR; Biology; Genome editing; DNA repair; Cas9; DNA; Non-homologous end joining; Genetics; Gene; Guide RNA; Computational biology; Cell biology","score_opus":0.0061694635803404415,"score_gpt":0.2483449875310197,"score_spread":0.24217552395067926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969520863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98860765,0.002237884,0.00034285983,0.000044485285,0.00023971962,0.0003775786,0.000013838926,0.000045043722,0.008090955],"genre_scores_gemma":[0.99831545,0.000041189967,0.0006426109,0.000115198374,0.00013339004,0.000022039403,0.00005576186,0.00005533804,0.0006190224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99836236,0.000034470777,0.0003833202,0.00055827026,0.0001588301,0.00050277356],"domain_scores_gemma":[0.99938977,0.000017503262,0.000048945578,0.0004271988,0.000018507704,0.000098067234],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024829287,0.00026779203,0.0003030082,0.0000580482,0.000038482664,0.000045562698,0.00020001706,0.00026269912,0.000049249793],"category_scores_gemma":[0.000016252583,0.00029277185,0.00019385661,0.00018539913,0.000019695459,0.000012808778,0.00008011729,0.00021239597,0.000023545823],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035745173,0.00011910368,0.07143614,0.00012447881,0.000058388934,0.00008303136,0.0003780532,0.004320124,0.92151576,0.000015993272,0.00050066836,0.0010908308],"study_design_scores_gemma":[0.0091318,0.0004330073,0.018673826,0.00029512297,0.000046634308,0.000049942733,0.001261126,0.0017384625,0.94357026,0.000049872662,0.023823649,0.0009263118],"about_ca_topic_score_codex":0.00024482567,"about_ca_topic_score_gemma":0.0019155446,"teacher_disagreement_score":0.052762315,"about_ca_system_score_codex":0.000035257555,"about_ca_system_score_gemma":0.00003904911,"threshold_uncertainty_score":0.99995244},"labels":[],"label_agreement":null},{"id":"W2971651304","doi":"10.1128/msphere.00439-19","title":"Potential Role of Extracellular ATP Released by Bacteria in Bladder Infection and Contractility","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Urinary Bladder and Prostate Research","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph's Hospital; Lawson Health Research Institute; Western University","funders":"Kimberly-Clark","keywords":"Contractility; Extracellular; Bacteria; Cell biology; Microbiology; Chemistry; Biology; Endocrinology","score_opus":0.005090129901619799,"score_gpt":0.24377529969310893,"score_spread":0.23868516979148913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971651304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946118,0.0017601292,0.000016656895,0.00015653307,0.00004362508,0.0003946329,0.0000135888295,0.000014821412,0.0029882276],"genre_scores_gemma":[0.9978544,0.00019469453,0.000049573104,0.000017368191,0.00002433979,0.0000062944714,0.000037973474,0.000011763067,0.0018035761],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99925077,0.00006384198,0.00017438408,0.00018285525,0.00015559646,0.00017254792],"domain_scores_gemma":[0.99963295,0.00003162174,0.0000387035,0.00017028027,0.000048702022,0.00007776723],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001736128,0.00008108958,0.00019522985,0.000028767712,0.000016369157,0.000010555947,0.00002496517,0.00009438346,0.0025665995],"category_scores_gemma":[0.000021442442,0.00007327568,0.00003519489,0.00008788633,0.00004067779,0.00009740726,0.000022845628,0.00019615568,0.00003954348],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00079539436,0.00026211294,0.37865236,0.00014999701,0.00003390989,0.0000183484,0.00017701573,0.000001662337,0.6092929,0.000006674149,0.0003144824,0.010295132],"study_design_scores_gemma":[0.0030475832,0.0006234602,0.92832726,0.000057360954,0.000032006013,0.0000413196,0.0002270934,0.00087264285,0.046106093,0.00010396083,0.02045147,0.00010972321],"about_ca_topic_score_codex":0.0009229139,"about_ca_topic_score_gemma":0.000035263798,"teacher_disagreement_score":0.5631868,"about_ca_system_score_codex":0.000022499216,"about_ca_system_score_gemma":0.000050340186,"threshold_uncertainty_score":0.9983452},"labels":[],"label_agreement":null},{"id":"W2976837560","doi":"10.1128/msphere.00433-19","title":"Unknown Risk on the Farm: Does Agricultural Use of Ionophores Contribute to the Burden of Antimicrobial Resistance?","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Antimicrobial; Agriculture; Antibiotic resistance; Biotechnology; Business; Environmental health; Risk analysis (engineering); Agricultural science; Environmental science; Chemistry; Medicine; Biology; Microbiology; Antibiotics; Biochemistry; Ecology","score_opus":0.012482556397564978,"score_gpt":0.2257358511953268,"score_spread":0.2132532947977618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2976837560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99215436,0.000021851598,0.00000586963,0.003903488,0.00011154552,0.0003675285,0.00012387078,0.0000071513787,0.003304309],"genre_scores_gemma":[0.9941409,0.000060831677,0.000090075955,0.00045431894,0.000038875027,0.0000014421793,0.0000030242604,0.0000062671315,0.0052042236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908715,0.00009307682,0.00018164345,0.00018049077,0.00024290256,0.00021474656],"domain_scores_gemma":[0.99937147,0.00017924978,0.00010814116,0.0002685906,0.0000049519354,0.00006758281],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001481997,0.00011980069,0.00014909336,0.0000041665608,0.00008507546,0.000021764103,0.0003015371,0.000038049275,0.0016289025],"category_scores_gemma":[0.000060453658,0.000045539193,0.0000769344,0.00013268624,0.00021597155,0.00006805,0.00018686918,0.000128327,0.0005206028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021022238,0.00016084668,0.033278175,0.000024459265,0.000055265722,0.0000022962536,0.000786776,0.010999767,0.9176237,0.0004225632,0.034613907,0.0018220308],"study_design_scores_gemma":[0.0005669707,0.00013139851,0.30469137,0.00015190014,0.000055043016,0.0000017777986,0.0005489046,0.00013629494,0.5488128,0.00011076015,0.14455652,0.00023624189],"about_ca_topic_score_codex":0.0005978901,"about_ca_topic_score_gemma":0.00024170273,"teacher_disagreement_score":0.3688109,"about_ca_system_score_codex":0.000042552954,"about_ca_system_score_gemma":0.0000027690053,"threshold_uncertainty_score":0.99928373},"labels":[],"label_agreement":null},{"id":"W2982598041","doi":"10.1128/msphere.00334-19","title":"Validating DNA Extraction Protocols for Bentonite Clay","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nuclear Waste Management Organization; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Nuclear Waste Management Organization","keywords":"Bentonite; Extraction (chemistry); Geology; Environmental science; Geotechnical engineering; Chemistry; Chromatography","score_opus":0.014318384952120334,"score_gpt":0.3356287530361653,"score_spread":0.32131036808404495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982598041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8692636,0.00008523537,0.09489777,0.00028518515,0.00008463784,0.01673198,0.000050009,0.00008429105,0.018517291],"genre_scores_gemma":[0.95144755,0.000011696821,0.024635464,0.0004810256,0.00023252385,0.0160952,0.000514766,0.000041970456,0.0065398067],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938685,0.00001941078,0.00012787765,0.0002689537,0.000043544995,0.00015336165],"domain_scores_gemma":[0.999516,0.0000067774095,0.000073044255,0.00031773475,0.000054928663,0.000031492586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010538313,0.00009225456,0.000078708115,0.000008599788,0.00006078253,0.00001868409,0.0001236738,0.00015204115,0.00010865826],"category_scores_gemma":[0.000015565212,0.00008763693,0.00007824371,0.00003901451,0.000016867418,0.0000023148216,0.000040933828,0.000050723713,0.00003126258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023564982,0.00003008136,0.0015626838,0.000020264994,0.000012883166,1.2090975e-7,0.0000034074646,0.000010894374,0.98997855,0.00064008863,0.003258982,0.004458492],"study_design_scores_gemma":[0.00021444217,0.00017363578,0.0002617875,0.000010048841,0.000004677291,0.0000042970278,0.000011863068,0.000063548556,0.6232839,0.00022671999,0.37564924,0.000095826515],"about_ca_topic_score_codex":0.0000035518249,"about_ca_topic_score_gemma":0.000005383165,"teacher_disagreement_score":0.37239027,"about_ca_system_score_codex":0.000008679085,"about_ca_system_score_gemma":0.000024263689,"threshold_uncertainty_score":0.35737303},"labels":[],"label_agreement":null},{"id":"W2984599914","doi":"10.1128/msphere.00610-19","title":"Kinesin-5 Is Dispensable for Bipolar Spindle Formation and Elongation in Candida albicans, but Simultaneous Loss of Kinesin-14 Activity Is Lethal","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Kinesin; Microtubule; Biology; Cell biology; Spindle pole body; Mitosis; Spindle apparatus; Kinetochore; Cell division; Genetics; Cell; Chromosome; Gene","score_opus":0.005497666021549665,"score_gpt":0.22783099307846225,"score_spread":0.22233332705691258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2984599914","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958934,0.00047921855,0.0027908045,0.00010658312,0.00006795678,0.00042784816,0.00013197216,0.000004342097,0.00009785388],"genre_scores_gemma":[0.9979005,0.00022172194,0.00043677964,0.00011302128,0.000048513473,0.000013477701,0.0001263828,0.000017653356,0.001121969],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930406,0.00002177703,0.00017506133,0.00024077151,0.000077525074,0.00018079804],"domain_scores_gemma":[0.9995525,0.000021237125,0.000110758505,0.00021385089,0.00006638344,0.000035277877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000082729544,0.00012952625,0.00017123064,0.00002342525,0.00003375178,0.000015895235,0.000081518876,0.00017235574,0.00004054946],"category_scores_gemma":[0.000030988464,0.0001276665,0.000052749667,0.000065567125,0.000033126926,0.000015038779,0.000040561386,0.00005750452,0.0000046667874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020484455,0.00007096717,0.01654004,0.00020484909,0.000020837862,0.0000017609167,0.0001702943,0.000134692,0.96910673,0.000011262878,0.00037896095,0.013154779],"study_design_scores_gemma":[0.0015859845,0.00036311703,0.00420201,0.000054388296,0.000027128333,0.00002982773,0.00013829816,0.014326709,0.9478852,0.00004845939,0.031048868,0.0002900038],"about_ca_topic_score_codex":0.0005314938,"about_ca_topic_score_gemma":0.0007782969,"teacher_disagreement_score":0.030669905,"about_ca_system_score_codex":0.000023611829,"about_ca_system_score_gemma":0.00004187677,"threshold_uncertainty_score":0.52060884},"labels":[],"label_agreement":null},{"id":"W2988876512","doi":"10.1128/msphere.00660-19","title":"Loss of <i>O</i> -Linked Protein Glycosylation in Burkholderia cenocepacia Impairs Biofilm Formation and Siderophore Activity and Alters Transcriptional Regulators","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Health and Medical Research Council; Australian Research Council; Medical Research Council; Department of Education and Training; University of Melbourne; UK Research and Innovation","keywords":"Burkholderia cenocepacia; Glycosylation; Biology; Proteome; Glycoprotein; Quorum sensing; Campylobacter jejuni; Biofilm; Phenotype; Cell biology; N-linked glycosylation; Glycan; Microbiology; Gene; Genetics; Virulence; Bacteria","score_opus":0.0057405009981414505,"score_gpt":0.20113485020794403,"score_spread":0.1953943492098026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2988876512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99892485,0.00030527674,0.000084889194,0.00018392086,0.000053986965,0.00035053742,0.000025364843,0.0000066269668,0.00006452087],"genre_scores_gemma":[0.99928373,0.00013822362,0.0004240096,0.00001932768,0.000025749077,0.000008952792,0.00004658488,0.000010255438,0.000043158332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939024,0.00003170501,0.00016050985,0.00021932945,0.00006406513,0.00013417419],"domain_scores_gemma":[0.9997117,0.0000028607249,0.00008300267,0.00014096817,0.0000292712,0.000032224103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000085040054,0.000110351895,0.00013576452,0.000031040876,0.000021561484,0.000012348469,0.000050855044,0.0002532799,0.000018731575],"category_scores_gemma":[0.000007703892,0.000105708794,0.000027948105,0.00007011911,0.000083014966,0.00001003037,0.00003891962,0.00006717097,9.618873e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018288888,0.000024648034,0.006247353,0.00007055686,0.000009933782,4.3527604e-7,0.00004297594,0.000009939264,0.98937154,0.00010761107,0.000008617004,0.003923521],"study_design_scores_gemma":[0.00094259053,0.00036816913,0.090104975,0.000031745054,0.000006215569,0.0000112999305,0.00006544799,0.00026080708,0.9066662,0.00020499514,0.0011943608,0.00014319998],"about_ca_topic_score_codex":0.00005267466,"about_ca_topic_score_gemma":0.00014954287,"teacher_disagreement_score":0.083857626,"about_ca_system_score_codex":0.000009750974,"about_ca_system_score_gemma":0.00002360077,"threshold_uncertainty_score":0.43106794},"labels":[],"label_agreement":null},{"id":"W2995712374","doi":"10.1128/msphere.00601-19","title":"Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Nuclear Waste Management Organization; McMaster University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Bentonite; Borehole; Relative species abundance; Microbial population biology; 16S ribosomal RNA; Geology; Biology; Abundance (ecology); Ecology; Bacteria; Geotechnical engineering","score_opus":0.04189434866105369,"score_gpt":0.269155716206169,"score_spread":0.22726136754511533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995712374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936741,0.000023955778,0.0000018750535,0.00019879306,0.00005865327,0.00040570856,0.00024711268,0.000023302435,0.005366474],"genre_scores_gemma":[0.9993187,0.0000035633896,0.000053360494,0.00018640026,0.000010905468,0.0000057599264,0.00023986713,0.000011553484,0.00016988124],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9948444,0.0043182415,0.00018775472,0.00016516053,0.00018278715,0.00030165256],"domain_scores_gemma":[0.99690443,0.0020475206,0.0001202605,0.00080547214,0.000076811084,0.000045477063],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014408159,0.0001230804,0.00023163985,0.000008598881,0.000573927,0.000019462545,0.00075981364,0.0001554114,0.01577246],"category_scores_gemma":[0.00013103249,0.00008513442,0.000034841694,0.00041332887,0.0011484588,0.00011489617,0.0005058526,0.0012456834,0.0003031731],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019437533,0.0004965565,0.599916,0.000010364115,0.0000667926,4.931865e-7,0.0025597555,0.000061236744,0.38790882,0.00005701487,0.008690619,0.0000379815],"study_design_scores_gemma":[0.0006090157,0.00030882334,0.97904235,0.000034959416,0.0000139284575,3.6134807e-7,0.002886673,0.00002443424,0.013937047,0.0008683423,0.0021459167,0.00012813963],"about_ca_topic_score_codex":0.015279731,"about_ca_topic_score_gemma":0.087357245,"teacher_disagreement_score":0.37912637,"about_ca_system_score_codex":0.0001987459,"about_ca_system_score_gemma":0.000071353104,"threshold_uncertainty_score":0.99127764},"labels":[],"label_agreement":null},{"id":"W2995750067","doi":"10.1128/msphere.00796-19","title":"Blocks in Tricarboxylic Acid Cycle of Salmonella enterica Cause Global Perturbation of Carbon Storage, Motility, and Host-Pathogen Interaction","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Deutsche Forschungsgemeinschaft","keywords":"Fumarase; Citric acid cycle; Salmonella enterica; Pentose phosphate pathway; Biochemistry; Biology; Glycolysis; Glycogen; Tricarboxylic acid; Metabolic pathway; Metabolism; Fumarate reductase; Metabolome; Microbiology; Mitochondrion; Enzyme; Succinate dehydrogenase; Metabolite; Escherichia coli","score_opus":0.0056492230176201155,"score_gpt":0.22742223108117765,"score_spread":0.22177300806355754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995750067","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99816275,0.0006398385,0.000012193072,0.000045841578,0.00013547186,0.00017165078,0.000036113484,0.0000048081106,0.00079132465],"genre_scores_gemma":[0.99956065,0.00016188019,0.00012715188,0.00001491742,0.00002803672,0.0000038513426,0.000022617396,0.000007650617,0.00007326254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932116,0.000041498217,0.0002179155,0.00023724532,0.000064689855,0.00011746536],"domain_scores_gemma":[0.9995622,0.000004279924,0.00012293151,0.00023674789,0.000047854774,0.000025953459],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065161235,0.000102144506,0.00017739739,0.000024526948,0.0000069126286,0.000004918973,0.000094982235,0.00022112066,0.000019120318],"category_scores_gemma":[0.00002524049,0.000098786964,0.00003814084,0.00011005595,0.000049061393,0.0000017828355,0.0001172281,0.00005987752,6.553393e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012093391,0.00007282726,0.049985126,0.000029264482,0.00002199243,9.5040394e-7,0.000031112777,0.00002466665,0.94703996,0.000006600362,0.000007144413,0.002659427],"study_design_scores_gemma":[0.0009911053,0.0009553549,0.14790753,0.000035996683,0.00002790462,0.000016936396,0.00017556442,0.0011367555,0.8478456,0.00007558233,0.0006643891,0.00016728592],"about_ca_topic_score_codex":0.00015650496,"about_ca_topic_score_gemma":0.00011505188,"teacher_disagreement_score":0.099194355,"about_ca_system_score_codex":0.00001923775,"about_ca_system_score_gemma":0.00002463508,"threshold_uncertainty_score":0.40284154},"labels":[],"label_agreement":null},{"id":"W3003947506","doi":"10.1128/msphere.00802-19","title":"Saccharomyces cerevisiae: First Steps to a Suitable Model System To Study the Function and Intracellular Transport of Human Kidney Anion Exchanger 1","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Ion Transport and Channel Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Deutscher Akademischer Austausch Dienst Kairo; Deutsche Forschungsgemeinschaft","keywords":"Saccharomyces cerevisiae; Biology; Mutant; Yeast; Intracellular; Kidney; Biochemistry; Secretion; Cell biology; Computational biology; Chemistry; Genetics; Gene","score_opus":0.016830067738033007,"score_gpt":0.22425207201932323,"score_spread":0.20742200428129023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3003947506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98933345,0.00025551545,0.008840086,0.0006754873,0.00005098434,0.0006797806,0.00002704773,0.000017666174,0.00011995554],"genre_scores_gemma":[0.9991148,0.000008416715,0.00008350859,0.00024370638,0.00014920862,0.000050714214,0.00007729992,0.00002025035,0.0002520753],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991904,0.00002546834,0.00021154681,0.0002905255,0.00014286302,0.00013921468],"domain_scores_gemma":[0.99954313,0.0000021823855,0.00005143203,0.0001903818,0.00006169159,0.00015120202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013620353,0.00013162974,0.0001583252,0.000013510198,0.000121298064,0.00001284716,0.00011388301,0.00008112038,0.000040460935],"category_scores_gemma":[0.0000051747843,0.00010334283,0.000046654837,0.000120431934,0.000013810405,0.000006010727,0.000025674346,0.000049295333,0.0000040949994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007267385,0.00025269573,0.031603374,0.0006970432,0.00023984973,0.000006416571,0.007489788,0.0077318004,0.94535655,0.0003031843,0.0039613703,0.0016311936],"study_design_scores_gemma":[0.009389208,0.016119797,0.23994079,0.0007128852,0.0015161061,0.000021608254,0.05383504,0.018601207,0.5961051,0.0001201515,0.060916573,0.002721545],"about_ca_topic_score_codex":0.000041137544,"about_ca_topic_score_gemma":0.00010790803,"teacher_disagreement_score":0.34925145,"about_ca_system_score_codex":0.0000076287943,"about_ca_system_score_gemma":0.00001750609,"threshold_uncertainty_score":0.4214198},"labels":[],"label_agreement":null},{"id":"W3006825747","doi":"10.1128/msphere.00913-19","title":"Metabolic Reprogramming in the Opportunistic Yeast Candida albicans in Response to Hypoxia","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Government of Canada; Fondation CHU de Québec; Centre Hospitalier Universitaire de Québec; Natural Sciences and Engineering Research Council of Canada","keywords":"Lipidome; Metabolome; Candida albicans; Biology; Metabolomics; Ergosterol; Biochemistry; Metabolic pathway; Pentose phosphate pathway; Yeast; Cell biology; Microbiology; Lipidomics; Metabolism; Glycolysis; Bioinformatics","score_opus":0.04365688164241893,"score_gpt":0.30098017254226916,"score_spread":0.25732329089985023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006825747","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98370904,0.0004427202,0.00008426913,0.011993027,0.000026563464,0.0004702388,0.000009899301,0.000026599653,0.003237667],"genre_scores_gemma":[0.9944022,0.000021118112,0.00035285033,0.004347056,0.00006594984,0.000035019497,0.0000065344966,0.0000132676605,0.00075597415],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987303,0.00018868705,0.0002590666,0.0003131185,0.00024075744,0.00026805187],"domain_scores_gemma":[0.99928313,0.0001102181,0.000029719924,0.00037044726,0.000027340888,0.00017914629],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071868167,0.00011003327,0.000270922,0.000029195357,0.000033371805,0.000020426109,0.00014569472,0.000052595657,0.00029974736],"category_scores_gemma":[0.0012365098,0.00007831591,0.00005932317,0.0005857074,0.000046883844,0.000032655178,0.00003252022,0.00024986744,0.00006675694],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010782988,0.00043306843,0.826035,0.000194192,0.00004200646,0.0028917808,0.017124306,0.000023537681,0.047019493,0.0007335195,0.0053157723,0.089404345],"study_design_scores_gemma":[0.00079314475,0.00022616748,0.87929296,0.00009172121,0.000027689297,0.000010266308,0.0065099252,0.00009712482,0.00010711379,0.000034719706,0.112691104,0.00011804583],"about_ca_topic_score_codex":0.0005098038,"about_ca_topic_score_gemma":0.0036151316,"teacher_disagreement_score":0.10737533,"about_ca_system_score_codex":0.000046295616,"about_ca_system_score_gemma":0.00019725483,"threshold_uncertainty_score":0.32820234},"labels":[],"label_agreement":null},{"id":"W3007449302","doi":"10.1128/msphere.00558-19","title":"Age-Related Variation of Bacterial and Fungal Communities in Different Body Habitats across the Young, Elderly, and Centenarians in Sardinia","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Consiglio Nazionale delle Ricerche; Canada Research Chairs; Government of Canada; Ministero dell’Istruzione, dell’Università e della Ricerca; Li Ka Shing Foundation","keywords":"Biology; Ecology; Gut flora; Habitat; Population; Mycobiota; Host (biology); Zoology; Environmental health; Immunology; Medicine","score_opus":0.01191636471897738,"score_gpt":0.2452145283885129,"score_spread":0.2332981636695355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007449302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99857813,0.00045065366,0.000015983393,0.0005882816,0.000064794825,0.00015474939,0.00004946375,0.0000030990414,0.00009486882],"genre_scores_gemma":[0.99942803,0.0002392254,0.00002326429,0.00011880802,0.00003797115,0.0000042234783,0.00010801468,0.000007957902,0.00003252082],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994002,0.000120878714,0.00018414833,0.00011402315,0.000034295335,0.00014646768],"domain_scores_gemma":[0.99977756,0.0000135296805,0.000050668492,0.00010886195,0.000014686322,0.0000347249],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000101760204,0.00008807675,0.00014123438,0.000006553439,0.000050357492,0.000023345534,0.000073556774,0.000105518455,0.00001965302],"category_scores_gemma":[0.000016528122,0.00006555321,0.000018784762,0.00003983784,0.000082652594,0.0000033673423,0.00010137487,0.00011996251,4.4664014e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026387442,0.000075899276,0.15732948,0.00009702429,0.00003301956,0.0000074420263,0.016602427,0.000008387463,0.8242713,0.000079203615,0.0003555868,0.000876329],"study_design_scores_gemma":[0.0016381379,0.00036939216,0.99095774,0.000035920715,0.000008402358,0.000011947207,0.0038032928,0.00010654486,0.0018756676,0.000045228193,0.001044096,0.00010365772],"about_ca_topic_score_codex":0.00056021387,"about_ca_topic_score_gemma":0.0070006186,"teacher_disagreement_score":0.83362824,"about_ca_system_score_codex":0.000007246194,"about_ca_system_score_gemma":0.000019055466,"threshold_uncertainty_score":0.39065096},"labels":[],"label_agreement":null},{"id":"W3008082660","doi":"10.1128/msphere.00062-20","title":"Nucleotide Excision Repair Protein Rad23 Regulates Cell Virulence Independent of Rad4 in Candida albicans","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Virulence; Candida albicans; Nucleotide excision repair; Microbiology; Biology; Gene; DNA repair; Genetics","score_opus":0.015129738315740502,"score_gpt":0.2433463645208688,"score_spread":0.2282166262051283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3008082660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99310637,0.00079528615,0.00011060555,0.00078471587,0.000024855728,0.0006021299,0.000008237423,0.00006661425,0.00450121],"genre_scores_gemma":[0.9967355,0.000057961857,0.0010644159,0.0002702097,0.000047505368,0.0000111797135,0.0000049561363,0.000019190098,0.0017890721],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99852914,0.00006795175,0.0004116343,0.00038579325,0.00037511627,0.00023039017],"domain_scores_gemma":[0.9992558,0.000040865336,0.00010408892,0.0003678418,0.000066855515,0.0001645784],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021834491,0.00014446418,0.00037579454,0.000023286522,0.000030317093,0.0000062465697,0.00012274906,0.00010721196,0.0010114815],"category_scores_gemma":[0.00020876982,0.00012163876,0.0001311585,0.00028012498,0.000090934656,0.00007470566,0.000059643677,0.000254498,0.00004638465],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018362205,0.0003587689,0.4557299,0.0011082188,0.000026774242,0.00027549473,0.0015327927,0.000035758174,0.53229713,0.00008750688,0.0025510818,0.004160373],"study_design_scores_gemma":[0.003329772,0.0010090667,0.7311745,0.001130937,0.00005499165,0.0000047941176,0.002656431,0.001159875,0.25418818,0.00034630505,0.0045969253,0.00034818545],"about_ca_topic_score_codex":0.0006139031,"about_ca_topic_score_gemma":0.0007675339,"teacher_disagreement_score":0.27810892,"about_ca_system_score_codex":0.00007870499,"about_ca_system_score_gemma":0.00015297817,"threshold_uncertainty_score":0.9999017},"labels":[],"label_agreement":null},{"id":"W3009652969","doi":"10.1128/msphere.00883-19","title":"Culture-Confirmed Invasive Meningococcal Disease in Canada, 2010 to 2014: Characterization of Serogroup B <i>Neisseria meningitidis</i> Strains and Their Predicted Coverage by the 4CMenB Vaccine","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Neisseria meningitidis; Meningococcal disease; Meningococcal vaccine; Neisseriaceae; Microbiology; Virology; Medicine; Bacterial meningitis; Biology; Meningitis; Bacteria; Antibiotics; Pediatrics; Genetics","score_opus":0.006697881543629932,"score_gpt":0.18736085443533537,"score_spread":0.18066297289170544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3009652969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99603534,0.00031092914,0.00007324107,0.0016708634,0.00026400702,0.00045542823,0.0011269085,0.000022806056,0.000040504478],"genre_scores_gemma":[0.9983141,0.00010113476,0.0000033237,0.00041640783,0.00004253976,0.000045905752,0.00083453575,0.000013862664,0.00022821351],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99917024,0.00011295187,0.0002667274,0.00023055005,0.00001446191,0.00020506955],"domain_scores_gemma":[0.9995919,0.000040183528,0.00010264187,0.00014021511,0.000050186496,0.00007490179],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004855393,0.00017233028,0.00024871927,0.000014119574,0.000096572,0.00001957591,0.0001269921,0.00008393507,0.00072674046],"category_scores_gemma":[0.000043929842,0.000117191565,0.000028067503,0.00014484666,0.000022644595,0.00009013261,0.00006706816,0.00016017024,0.0000072645344],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023410193,0.00003354709,0.033385593,0.000023258732,0.00006432656,8.051422e-7,0.0009723697,0.000008934627,0.9524845,0.000021927526,0.012251257,0.00051937986],"study_design_scores_gemma":[0.002377692,0.0003293571,0.76974475,0.00006693533,0.00005116807,0.000009465374,0.00082313805,0.00003479823,0.19237079,0.000017101629,0.033873934,0.0003008888],"about_ca_topic_score_codex":0.09507449,"about_ca_topic_score_gemma":0.1827313,"teacher_disagreement_score":0.7601137,"about_ca_system_score_codex":0.000036430825,"about_ca_system_score_gemma":0.00019326623,"threshold_uncertainty_score":0.9109515},"labels":[],"label_agreement":null},{"id":"W3011896977","doi":"10.1128/msphere.00143-20","title":"Nonclonal Emergence of Colistin Resistance Associated with Mutations in the BasRS Two-Component System in Escherichia coli Bloodstream Isolates","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; UK Research and Innovation; Queen's University Belfast; Directorate for Biological Sciences; Royal Society; Queen's University; Department for Employment and Learning, Northern Ireland","keywords":"Colistin; Escherichia coli; Biology; Microbiology; Lipid A; Plasmid; Bacteria; MCR-1; Drug resistance; Multiple drug resistance; Enterobacteriaceae; Gene; Genetics; Antibiotics","score_opus":0.010500163154165413,"score_gpt":0.23179749837197236,"score_spread":0.22129733521780695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3011896977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970536,0.00034123973,0.00015533791,0.0002433676,0.00003409222,0.0002791639,0.00005646148,0.000009260145,0.001827464],"genre_scores_gemma":[0.99882716,0.000018640147,0.0008255779,0.000090099405,0.00003672199,0.000018606082,0.000081339895,0.000016177091,0.00008566146],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99890137,0.00016428505,0.00032561697,0.0002691853,0.0001433865,0.00019615545],"domain_scores_gemma":[0.9994642,0.000042537606,0.00017859082,0.00020656575,0.0000685774,0.000039495495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017028405,0.00013881487,0.00020058209,0.000011253466,0.000041567568,0.000015579304,0.00027049994,0.00007942988,0.000025826008],"category_scores_gemma":[0.00011493961,0.00010928122,0.00003929125,0.00033746584,0.00010481483,0.000004611965,0.000036035155,0.000113009046,0.0000025656575],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000892722,0.00039864043,0.4017095,0.00029430885,0.00013450778,0.00009311611,0.0013445707,0.0017252264,0.5904741,0.0006557636,0.0022007737,0.00007675732],"study_design_scores_gemma":[0.0037835448,0.00060521165,0.91427547,0.000918837,0.000092946684,0.0000066802763,0.011423617,0.0018719793,0.06415152,0.00004429521,0.0021154962,0.0007104053],"about_ca_topic_score_codex":0.00011257799,"about_ca_topic_score_gemma":0.0035232871,"teacher_disagreement_score":0.5263226,"about_ca_system_score_codex":0.000021063435,"about_ca_system_score_gemma":0.0000950702,"threshold_uncertainty_score":0.4456359},"labels":[],"label_agreement":null},{"id":"W3013191212","doi":"10.1128/msphere.00134-20","title":"mSphere of Influence: Interferon Ultra Is a Means To Fight Viral Disease","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Hepatitis C virus research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Interferon; Virology; Disease; Medicine; Internal medicine","score_opus":0.02870440108596731,"score_gpt":0.31363397674275356,"score_spread":0.2849295756567862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3013191212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96619326,0.00029689306,0.00022267051,0.0136286635,0.000042504653,0.00063305045,0.00016173034,0.000085461,0.01873578],"genre_scores_gemma":[0.98950857,0.00004302238,0.0005052823,0.0076561747,0.00013528719,0.00003792333,0.000017073473,0.00004046652,0.0020561877],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982959,0.000059591595,0.00033055636,0.00036582825,0.000592124,0.00035598545],"domain_scores_gemma":[0.99839324,0.000042088344,0.000046463872,0.00041216618,0.00018762944,0.0009184037],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007611709,0.00017603932,0.0003476629,0.000030313948,0.00003842584,0.000023071496,0.0002524712,0.00008109116,0.008153234],"category_scores_gemma":[0.0005307939,0.00015422577,0.00012709711,0.0003831491,0.000076788194,0.00011482819,0.000097092234,0.00029538345,0.0012987892],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004429745,0.0004952298,0.4538664,0.002198562,0.0003133996,0.0007788515,0.010682502,0.00022742251,0.13782084,0.000252062,0.31579462,0.07314037],"study_design_scores_gemma":[0.0050344677,0.005088841,0.13827382,0.0016615635,0.0002576036,0.000008790855,0.001211758,0.0028024598,0.104767606,0.00019813939,0.7397847,0.00091026566],"about_ca_topic_score_codex":0.0002355206,"about_ca_topic_score_gemma":0.000076165285,"teacher_disagreement_score":0.42399007,"about_ca_system_score_codex":0.0000766144,"about_ca_system_score_gemma":0.00024127663,"threshold_uncertainty_score":0.9994788},"labels":[],"label_agreement":null},{"id":"W3014953259","doi":"10.1128/msphere.00195-20","title":"Identification of the Neuroinvasive Pathogen Host Target, LamR, as an Endothelial Receptor for the Treponema pallidum Adhesin Tp0751","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Michael Smith Health Research BC; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Treponema; Bacterial adhesin; Microbiology; Biology; Neisseria; Pathogen; Neisseria meningitidis; Virology; Neisseria gonorrhoeae; Haemophilus influenzae; Syphilis; Streptococcus pneumoniae; Human pathogen; Immunology; Virulence; Bacteria; Gene; Antibiotics; Genetics","score_opus":0.03198487012291631,"score_gpt":0.2737969319247249,"score_spread":0.24181206180180856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014953259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96714216,0.00074114825,0.00007523819,0.029473046,0.0003628974,0.0014108784,0.0004487637,0.000044540222,0.00030133495],"genre_scores_gemma":[0.9964241,0.0001287175,0.00024213843,0.0016768904,0.00046027318,0.00023463098,0.000054538894,0.000035313886,0.00074339035],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895394,0.00008042299,0.00027818274,0.00028753534,0.00024520335,0.00015471433],"domain_scores_gemma":[0.99895763,0.00022946902,0.00014758788,0.0004629254,0.000108050066,0.000094334915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012242477,0.00014127827,0.00021597493,0.000008111907,0.00012869896,0.000026258607,0.00018911815,0.00005851522,0.00045482896],"category_scores_gemma":[0.00044183695,0.00007654846,0.00018121836,0.00013522302,0.000065304965,0.000041937357,0.00003406711,0.00008317026,0.000059589576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006245282,0.00086266536,0.05592111,0.0001662731,0.00032514753,0.000017761158,0.0034521825,0.000020040068,0.9113212,0.0015738255,0.015350427,0.010364794],"study_design_scores_gemma":[0.003433316,0.0017153472,0.10937541,0.000094122785,0.0006183649,0.000022656688,0.0022892053,0.00049789326,0.74283445,0.00024842334,0.13865896,0.00021188374],"about_ca_topic_score_codex":0.00004970336,"about_ca_topic_score_gemma":0.00009205191,"teacher_disagreement_score":0.16848682,"about_ca_system_score_codex":0.000029087927,"about_ca_system_score_gemma":0.00009915522,"threshold_uncertainty_score":0.4980058},"labels":[],"label_agreement":null},{"id":"W3015328062","doi":"10.1128/msphere.00153-20","title":"Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"National Institute on Aging; European Regional Development Fund; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Universidade Federal de Minas Gerais; Ministério da Ciência, Tecnologia e Inovação; AW Howard Memorial Trust; Fundação de Amparo à Pesquisa do Estado de São Paulo; Howard Hughes Medical Institute","keywords":"Aspergillus nidulans; Virulence; Biology; Microbiology; Context (archaeology); Aspergillus; Chronic granulomatous disease; Aspergillus fumigatus; Gene; Genetics","score_opus":0.08270442474911646,"score_gpt":0.30604422771076206,"score_spread":0.2233398029616456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3015328062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954836,0.00006105992,0.00088854425,0.0012869847,0.00016512985,0.00017605822,0.000117987285,0.00001544808,0.0018051972],"genre_scores_gemma":[0.9981857,0.0000417751,0.000072142604,0.00055898685,0.0001899194,0.0000018454256,0.00006062274,0.000009540302,0.0008794983],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99895984,0.0000696628,0.000494642,0.00017386451,0.00020934377,0.00009264908],"domain_scores_gemma":[0.99928874,0.000059092115,0.00019075752,0.00022156921,0.00014518495,0.00009462958],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001822711,0.000078657904,0.0003103408,0.00000534501,0.00003355817,0.0000026370603,0.000076347445,0.00008883997,0.0011786186],"category_scores_gemma":[0.00040707862,0.00005163521,0.00019060072,0.00012757897,0.00013067032,0.000033472883,0.000037026413,0.00014873718,0.000017083803],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004676643,0.00011386144,0.74622697,0.00016036919,0.00004579359,0.000005229431,0.00008656071,0.0000016039356,0.24832179,0.0002332576,0.0003893505,0.003947539],"study_design_scores_gemma":[0.0005000761,0.00022936809,0.9939372,0.00006880068,0.00008288913,0.0000029295022,0.00012021958,0.00058845675,0.0025433663,0.000026199014,0.0018504498,0.00005006706],"about_ca_topic_score_codex":0.000005734438,"about_ca_topic_score_gemma":0.000008977628,"teacher_disagreement_score":0.2477102,"about_ca_system_score_codex":0.000008737883,"about_ca_system_score_gemma":0.00019210957,"threshold_uncertainty_score":0.99973446},"labels":[],"label_agreement":null},{"id":"W3015933272","doi":"10.1128/msphere.00256-20","title":"Oxadiazole-Containing Macrocyclic Peptides Potentiate Azole Activity against Pathogenic <i>Candida</i> Species","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Azole; Fluconazole; Candida albicans; Efflux; Fungal pathogen; Microbiology; Antimicrobial; Biology; Chemistry; Antifungal; Pathogen; Biochemistry","score_opus":0.02847863867963116,"score_gpt":0.248045119907039,"score_spread":0.21956648122740785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3015933272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9700254,0.0010236586,0.00044382276,0.0018238082,0.00009396166,0.0003133628,0.000036500413,0.00019055404,0.026048893],"genre_scores_gemma":[0.99332196,0.0002904977,0.00030405767,0.0032895145,0.00035006145,0.000011962763,0.00002429853,0.000041245552,0.0023663833],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982851,0.000063788306,0.00028949682,0.00051568076,0.0003614391,0.00048450305],"domain_scores_gemma":[0.99899995,0.000055509707,0.000110544264,0.000373157,0.00007889902,0.00038191085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001479323,0.00026546099,0.000494067,0.000021218011,0.00020778926,0.000055159548,0.000154349,0.0001266575,0.0006362566],"category_scores_gemma":[0.00016216625,0.00023746894,0.00028861925,0.0002503014,0.00013105894,0.00017764932,0.00009114736,0.00040593147,0.00036753019],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001292219,0.0001509461,0.36199582,0.000291559,0.0001407735,0.00038800697,0.0008289304,0.000022218623,0.6014935,0.000046674297,0.004297501,0.029051876],"study_design_scores_gemma":[0.0027309577,0.00053112564,0.9049716,0.00025618056,0.00021004998,0.000020212423,0.002829001,0.0007938324,0.057155784,0.00007245579,0.029831404,0.00059740315],"about_ca_topic_score_codex":0.000033414253,"about_ca_topic_score_gemma":0.00019383039,"teacher_disagreement_score":0.5443377,"about_ca_system_score_codex":0.000096042255,"about_ca_system_score_gemma":0.00013781109,"threshold_uncertainty_score":0.9683702},"labels":[],"label_agreement":null},{"id":"W3017001125","doi":"10.1128/msphere.00056-20","title":"Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Serotype; Salmonella enterica; Outbreak; Salmonella; Virology; Microbiology; Biology; Bacteria; Genetics","score_opus":0.07408533433080187,"score_gpt":0.28814077270469063,"score_spread":0.21405543837388874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3017001125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966746,0.000051544925,0.0000065722693,0.0026569904,0.00012483458,0.00035285795,0.000024613746,0.000027448174,0.000080563135],"genre_scores_gemma":[0.99882627,0.000037796483,0.0001252523,0.0007406276,0.00015049943,0.000029878436,0.00007188933,0.00000273265,0.000015079023],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99802727,0.00021120865,0.00068498903,0.0005427696,0.00015178011,0.00038199604],"domain_scores_gemma":[0.99947894,0.0000945016,0.00018395076,0.00007187845,0.000065526925,0.00010521127],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026006618,0.00018128881,0.0004380947,0.000027622486,0.00007306326,0.000009597529,0.00028206728,0.000112824564,0.00018326992],"category_scores_gemma":[0.00026993811,0.00009756953,0.000053647,0.0017305441,0.000043780317,0.00008747578,0.00013723185,0.00024032236,0.000013727894],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019806459,0.00018557355,0.55499583,0.000021085847,0.0000037581444,0.000008800754,0.0028884825,0.00047046324,0.43200636,0.000005136672,0.0002894721,0.008926986],"study_design_scores_gemma":[0.00029809578,0.0002835658,0.9940154,0.00011118823,0.0000033972472,0.0000013229845,0.0020986465,0.00095955847,0.0013361203,0.0000085998445,0.00066453876,0.0002195507],"about_ca_topic_score_codex":0.0045572035,"about_ca_topic_score_gemma":0.012840668,"teacher_disagreement_score":0.4390196,"about_ca_system_score_codex":0.000025687252,"about_ca_system_score_gemma":0.000008367629,"threshold_uncertainty_score":0.7165394},"labels":[],"label_agreement":null},{"id":"W3024925396","doi":"10.1128/msphere.00334-20","title":"Extreme Viral Partitioning in a Marine-Derived High Arctic Lake","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Center for Northern Studies","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada; ArcticNet; Canada First Research Excellence Fund; Parks Canada","keywords":"Arctic; The arctic; Oceanography; Extreme environment; Environmental science; Geography; Biology; Geology; Paleontology","score_opus":0.01800773719918324,"score_gpt":0.19942186094731185,"score_spread":0.1814141237481286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3024925396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9797713,0.000028453838,0.00006416307,0.0010701715,0.000063534426,0.000106738335,0.000002358825,0.000037961072,0.018855331],"genre_scores_gemma":[0.9968775,0.000012527662,0.001354143,0.0007591694,0.0000448079,0.000012232435,0.00001535059,0.000012685427,0.0009116008],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992156,0.0000465509,0.0001561713,0.00023019208,0.00013239638,0.00021910125],"domain_scores_gemma":[0.99973315,0.000016062815,0.00003822082,0.00010405793,0.0000020682378,0.00010645846],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000063852574,0.00009655065,0.0001134331,0.0000055405044,0.00004645391,0.000021069274,0.00011510094,0.00005107348,0.05252359],"category_scores_gemma":[0.000020099616,0.00008470175,0.000030623527,0.00019303492,0.000050536815,0.000101376005,0.0001503706,0.00017003577,0.0016332336],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012565897,0.00020705712,0.8706791,0.00006702835,0.00003888949,0.0002523197,0.0036155928,0.045480028,0.061136298,0.00060772867,0.0027443955,0.015045916],"study_design_scores_gemma":[0.004647993,0.00064138894,0.84703267,0.00013828957,0.00007022361,0.000022771072,0.00096657116,0.02893618,0.0071294103,0.02351485,0.08540804,0.0014915896],"about_ca_topic_score_codex":0.00077214563,"about_ca_topic_score_gemma":0.0015739156,"teacher_disagreement_score":0.08266365,"about_ca_system_score_codex":0.00004029513,"about_ca_system_score_gemma":0.0000042499,"threshold_uncertainty_score":0.99914414},"labels":[],"label_agreement":null},{"id":"W3027062342","doi":"10.1128/msphere.00364-20","title":"Modelling Free-Living and Particle-Associated Bacterial Assemblages across the Deep and Hypoxic Lower St. Lawrence Estuary","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Concordia University","funders":"Canadian Institutes of Health Research","keywords":"Estuary; Ecosystem; Environmental change; Climate change; Habitat; Baseline (sea); Ecology; Environmental resource management; Environmental science; Geography; Oceanography; Fishery; Biology","score_opus":0.0184336495198481,"score_gpt":0.22077405604922629,"score_spread":0.20234040652937818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3027062342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984113,0.00009196152,0.00019755372,0.0007868388,0.000078985526,0.00009072185,0.000010617116,0.000029918652,0.00030211813],"genre_scores_gemma":[0.99894655,0.000054395052,0.000125667,0.00077594625,0.000034063705,0.000004233868,0.0000044132735,0.000008153313,0.000046564328],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999173,0.00021789389,0.000112232105,0.00019547647,0.00005493417,0.0002464716],"domain_scores_gemma":[0.9994027,0.0002935342,0.00004833934,0.00017856578,0.000004245822,0.000072596806],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020447404,0.00010320426,0.00012764253,0.0000011401199,0.00043998836,0.000046991107,0.000255535,0.000090889356,0.0018978346],"category_scores_gemma":[0.00009514984,0.00008121419,0.000020600353,0.00007707154,0.00025690297,0.00013614286,0.00067414955,0.00020966268,0.000042425945],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000461734,0.00055302953,0.29797372,0.00007200109,0.00021023101,0.000054378652,0.050040867,0.059273433,0.5583887,0.000347695,0.018814385,0.013809796],"study_design_scores_gemma":[0.0023214861,0.0012608992,0.6137806,0.000094801784,0.00012864747,0.00002629273,0.005307724,0.35327122,0.0036877878,0.005840134,0.012927248,0.0013531444],"about_ca_topic_score_codex":0.00039794238,"about_ca_topic_score_gemma":0.0040939236,"teacher_disagreement_score":0.5547009,"about_ca_system_score_codex":0.000016058653,"about_ca_system_score_gemma":0.000004106391,"threshold_uncertainty_score":0.99901456},"labels":[],"label_agreement":null},{"id":"W3032513548","doi":"10.1128/msphere.00292-20","title":"Unraveling a Tangled Skein: Evolutionary Analysis of the Bacterial Gibberellin Biosynthetic Operon","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"National Institute of General Medical Sciences; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft; U.S. Department of Agriculture; National Science Foundation","keywords":"Operon; Rhizobia; Biology; Gene cluster; Bacteria; Gene; Genetics; Gibberellin; L-arabinose operon; Symbiosis","score_opus":0.01704042117497001,"score_gpt":0.19165581202704807,"score_spread":0.17461539085207806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3032513548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952045,0.00015913686,0.0000023781008,0.0038142852,0.00009568259,0.00012217533,0.000093852635,0.000038802482,0.00046915511],"genre_scores_gemma":[0.9992501,0.000004333645,0.00013503584,0.00030496382,0.00017336638,0.0000044570597,0.000033467084,0.0000011636696,0.00009307382],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990199,0.00011370346,0.00023078713,0.00024771816,0.0002132353,0.00017461064],"domain_scores_gemma":[0.9995921,0.0000934301,0.00010753435,0.00008171659,0.00005473875,0.00007044968],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000784949,0.00011392415,0.00022716874,0.000006041242,0.000121666,0.000023999824,0.00038881126,0.000085117834,0.003596751],"category_scores_gemma":[0.00007938439,0.000037742167,0.00029332368,0.0012312864,0.00006378845,0.000047891554,0.00011687743,0.00008905712,0.00005134844],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035974015,0.000046560526,0.01750618,0.000005849153,0.00022735944,0.0000010791514,0.0001842397,0.000028816292,0.97846967,0.00007168998,0.0005502357,0.002872324],"study_design_scores_gemma":[0.0005434889,0.00046038977,0.6732964,0.00008723049,0.0019572163,0.0000042759307,0.0011112703,0.006054103,0.29919618,0.00024869473,0.016285513,0.0007552383],"about_ca_topic_score_codex":0.0002765549,"about_ca_topic_score_gemma":0.00029095047,"teacher_disagreement_score":0.6792735,"about_ca_system_score_codex":0.000022875427,"about_ca_system_score_gemma":0.000011103794,"threshold_uncertainty_score":0.9973141},"labels":[],"label_agreement":null},{"id":"W3033726374","doi":"10.1128/msphere.00253-20","title":"Evaluation of a Rapid Point-of-Care Multiplex Immunochromatographic Assay for the Diagnosis of Enteric Fever","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Fogarty International Center; National Institute of Allergy and Infectious Diseases; International Centre for Diarrhoeal Disease Research, Bangladesh; School of Medicine, Stanford University; Robert Wood Johnson Foundation","keywords":"Typhoid fever; Enteric virus; Enteric fever; Medicine; Public health; Point-of-care testing; Virology; Environmental health; Vaccination; Point of care; Multiplex; Immunology; Intensive care medicine; Biology; Bioinformatics; Pathology","score_opus":0.07359229326881611,"score_gpt":0.28056582618401954,"score_spread":0.20697353291520343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033726374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99368083,0.004349059,0.000024157493,0.0011951502,0.00007411432,0.0004677525,0.00007907851,0.00001088871,0.00011896289],"genre_scores_gemma":[0.99932104,0.00022971714,0.00009608777,0.0001608427,0.00005752429,0.00009184018,0.000039593244,9.284447e-7,0.0000024012654],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9989039,0.0003160533,0.00030297338,0.00015258054,0.00020661818,0.00011790709],"domain_scores_gemma":[0.99842113,0.0009542133,0.00023514405,0.000064975415,0.00029641564,0.000028141472],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00070571835,0.000085852655,0.00024602225,0.0000037221157,0.000046600813,0.0000038561657,0.00023235226,0.000071186565,0.0013006526],"category_scores_gemma":[0.0004902181,0.000026327923,0.00022443515,0.00023521294,0.000108844135,0.000033804696,0.00004381334,0.00004121806,0.0000020923687],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001257445,0.00010147903,0.28217003,0.00010361871,0.0001722461,1.7145618e-7,0.0008878793,0.00005738122,0.19031861,0.00009379186,0.0018913113,0.5240777],"study_design_scores_gemma":[0.0006855108,0.0009556761,0.96256167,0.00006429141,0.00026954102,0.0000011416064,0.004063736,0.0023212205,0.023073057,0.0004381877,0.005423862,0.00014208397],"about_ca_topic_score_codex":0.00016337997,"about_ca_topic_score_gemma":0.00013563369,"teacher_disagreement_score":0.68039167,"about_ca_system_score_codex":0.000006815925,"about_ca_system_score_gemma":0.00000954513,"threshold_uncertainty_score":0.9996123},"labels":[],"label_agreement":null},{"id":"W3033763368","doi":"10.1128/msphere.00293-20","title":"Combining Whole-Genome Sequencing and Multimodel Phenotyping To Identify Genetic Predictors of <i>Salmonella</i> Virulence","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Fonds de Recherche du Québec – Nature et Technologies; University of Guelph; Université Laval; Université de Montréal; Dalhousie University; Jewish General Hospital; McGill University","funders":"Genome Canada","keywords":"Virulence; Salmonella; Salmonella enterica; Biology; Serotype; Genomics; Whole genome sequencing; Genome; Food safety; Genetic diversity; Genetics; Microbiology; Bacteria; Gene; Population; Medicine; Food science; Environmental health","score_opus":0.04087016517097351,"score_gpt":0.2481947387035568,"score_spread":0.20732457353258327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033763368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737775,0.00072304404,0.0002477459,0.000910334,0.00009348341,0.0001817105,0.0000460456,0.00006589355,0.00035398136],"genre_scores_gemma":[0.99750787,0.000050922252,0.0007193783,0.0014548888,0.00020956963,0.000008344365,0.00001838527,0.000002355123,0.000028290317],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987137,0.00009993274,0.0003447311,0.00041124277,0.00013195311,0.0002984844],"domain_scores_gemma":[0.99936646,0.00016827333,0.000115328265,0.000063489475,0.000046606685,0.00023982275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015351165,0.00016086806,0.00030773488,0.00000564123,0.000102302896,0.000027193957,0.00026216978,0.00009738396,0.00009760896],"category_scores_gemma":[0.00010450323,0.00007837607,0.00006134465,0.0002502514,0.00006621144,0.000074375654,0.00017278464,0.00012008042,0.000042185482],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024692086,0.00001014646,0.07899785,0.00002128618,0.000014105209,0.000004993609,0.0006355675,0.00071541563,0.9111367,0.000012983448,0.000107897766,0.00831835],"study_design_scores_gemma":[0.00040189433,0.0006459043,0.97274286,0.000115595714,0.00005528866,0.00001869321,0.002464566,0.0077138096,0.008324447,0.00044546466,0.0064738747,0.0005976284],"about_ca_topic_score_codex":0.0002540982,"about_ca_topic_score_gemma":0.000057083522,"teacher_disagreement_score":0.90281224,"about_ca_system_score_codex":0.000018369616,"about_ca_system_score_gemma":0.00000892545,"threshold_uncertainty_score":0.31960833},"labels":[],"label_agreement":null},{"id":"W3037380067","doi":"10.1128/msphere.00235-20","title":"Characterization of a Type II-A CRISPR-Cas System in <i>Streptococcus mutans</i>","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"University of Toronto; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"CRISPR; Streptococcus mutans; Biology; Genome editing; Computational biology; Adaptation (eye); Bacteria; Microbiology; Genetics; Gene","score_opus":0.007599037939071524,"score_gpt":0.2518717941244097,"score_spread":0.24427275618533817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3037380067","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934591,0.00024766152,0.0050208555,0.000074902826,0.00008747077,0.00014091977,0.000014107595,0.000014937308,0.0009400108],"genre_scores_gemma":[0.99950033,0.000027686177,0.00011972333,0.0000811553,0.000108800225,0.000008053144,0.00006730273,0.000014030965,0.0000728985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99951273,0.0000120894565,0.00015604691,0.00016036135,0.000055457618,0.00010328579],"domain_scores_gemma":[0.9997474,0.0000016626536,0.00003588882,0.00012854,0.0000428819,0.000043626158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000030002542,0.00008011326,0.00010792244,0.000008558384,0.000014096349,0.0000045240736,0.00008050515,0.000074335556,0.00003363653],"category_scores_gemma":[0.000021743157,0.00008272458,0.000027941887,0.00014191911,0.000010307212,0.000001650287,0.000050471404,0.000042145442,0.0000059847266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028079668,0.000012663035,0.0036074584,0.000100285375,0.000009410053,0.0000033832373,0.00015398928,0.00030503355,0.99473274,0.000016629554,0.00014952994,0.0008808022],"study_design_scores_gemma":[0.0003067995,0.00019343375,0.0057797167,0.000033135897,0.000007639253,0.0000029533046,0.00016779001,0.0008814951,0.97835445,5.940356e-7,0.014162649,0.000109352324],"about_ca_topic_score_codex":0.000007995312,"about_ca_topic_score_gemma":0.000011514495,"teacher_disagreement_score":0.016378295,"about_ca_system_score_codex":0.00000666381,"about_ca_system_score_gemma":0.000024592551,"threshold_uncertainty_score":0.33734107},"labels":[],"label_agreement":null},{"id":"W3037647457","doi":"10.1128/msphere.00480-20","title":"<i>Candida albicans</i> Genetic Background Influences Mean and Heterogeneity of Drug Responses and Genome Stability during Evolution in Fluconazole","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Biology; Candida albicans; Drug resistance; Antifungal drug; Fluconazole; Adaptation (eye); Drug; Genetic Fitness; Genetics; Genome; Corpus albicans; Genetic variability; Evolutionary biology; Antifungal; Microbiology; Genotype; Gene; Pharmacology","score_opus":0.010861809259663211,"score_gpt":0.23248229141923157,"score_spread":0.22162048215956837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3037647457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99488944,0.004472355,0.00023079378,0.00012222261,0.000016343765,0.00014559724,0.000046240006,0.0000073369347,0.00006967307],"genre_scores_gemma":[0.9988402,0.00035810834,0.0005950139,0.000111051595,0.000032321495,0.000006763983,0.000013414154,0.00001017915,0.00003293766],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990491,0.00011294411,0.00023869531,0.0003409635,0.00009372972,0.00016454418],"domain_scores_gemma":[0.9996044,0.000012493187,0.00006613951,0.00016975068,0.00003962041,0.000107574466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011427915,0.00012374335,0.00015540616,0.000015878326,0.000049650804,0.000014027034,0.00008896705,0.00007729828,0.000022938639],"category_scores_gemma":[0.000035581565,0.0001279375,0.000030672214,0.000088464585,0.0001854861,0.000005878804,0.00013084624,0.000065023036,9.406885e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018456574,0.00002123626,0.31736672,0.000087419714,0.0000151056265,0.0000015106498,0.0002399951,0.0003749574,0.6815816,0.000008559606,0.0000043341124,0.000113953414],"study_design_scores_gemma":[0.00068143767,0.00012572344,0.975903,0.000009688622,0.000011407319,0.0000089717505,0.0006522194,0.0006037623,0.02150626,0.00004184664,0.0002992054,0.00015648737],"about_ca_topic_score_codex":0.00012850054,"about_ca_topic_score_gemma":0.002051006,"teacher_disagreement_score":0.66007537,"about_ca_system_score_codex":0.000018394061,"about_ca_system_score_gemma":0.00005723564,"threshold_uncertainty_score":0.521714},"labels":[],"label_agreement":null},{"id":"W3037708341","doi":"10.1128/msphere.00521-20","title":"Doesn’t It All Come Down to Function? How To Correlate VAR2CSA Antibodies with Protection","year":2020,"lang":"en","type":"letter","venue":"mSphere","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Antibody; Function (biology); Computer science; Virology; Medicine; Immunology; Biology; Genetics","score_opus":0.013852092667377136,"score_gpt":0.20943760294289956,"score_spread":0.19558551027552243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3037708341","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0031055529,0.0053608255,0.003332395,0.97773904,0.0035990404,0.0020910033,0.00014637293,0.00045508976,0.0041706925],"genre_scores_gemma":[0.08565737,0.000052091298,0.000079665224,0.81881505,0.00016048049,0.00040421507,0.0012545579,0.00014212237,0.09343444],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99760747,0.00022725662,0.00035749687,0.0008752937,0.00011990614,0.0008125673],"domain_scores_gemma":[0.9989406,0.000056011428,0.00021117085,0.0006378565,0.00013477748,0.000019570505],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00010856812,0.0006377025,0.00071183423,0.00013606517,0.0004514205,0.000112529146,0.00053646317,0.000988039,0.0017443392],"category_scores_gemma":[0.000054910535,0.00050856336,0.00018668226,0.00041756764,0.00017446032,0.00013070052,0.00019493279,0.0024415075,0.0066381455],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052291324,0.000060022154,0.000038243204,0.00014519495,0.000617924,0.00008279929,0.001098172,0.00009701032,0.013345241,0.000022017699,0.97900414,0.004966345],"study_design_scores_gemma":[0.0008077049,0.0011685622,0.0006033441,0.00024276499,0.00019200682,0.000069175614,0.00061034213,0.0000022650254,0.00076405547,0.000047836198,0.99474084,0.0007510907],"about_ca_topic_score_codex":0.00030661715,"about_ca_topic_score_gemma":0.00004152457,"teacher_disagreement_score":0.15892397,"about_ca_system_score_codex":0.00008578484,"about_ca_system_score_gemma":0.000099184,"threshold_uncertainty_score":0.9998599},"labels":[],"label_agreement":null},{"id":"W3038854175","doi":"10.1128/msphere.00354-20","title":"Light and Primary Production Shape Bacterial Activity and Community Composition of Aerobic Anoxygenic Phototrophic Bacteria in a Microcosm Experiment","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"Biologické Centrum, Akademie Věd České Republiky; Institute of Hydrobiology; Human Frontier Science Program; Universidad de Granada; Akademie Věd České Republiky; Grantová Agentura České Republiky; Academy of Finland","keywords":"Anoxygenic photosynthesis; Microcosm; Bacteria; Phototroph; Bacterial growth; Phytoplankton; Composition (language); Light intensity; Primary producers; Microbial population biology; Bacterioplankton; Biology; Photosynthesis; Ecology; Respiration; Dissolved organic carbon; Environmental chemistry; Chemistry; Botany; Nutrient","score_opus":0.01346838247873602,"score_gpt":0.21121182148059617,"score_spread":0.19774343900186014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3038854175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989837,0.00004276432,0.0000017481068,0.00042348704,0.00005759144,0.00026924547,0.000004091223,0.000012976438,0.0002044343],"genre_scores_gemma":[0.99947536,0.000039244776,0.00025436064,0.00016209538,0.000022263832,0.000011462935,0.000022827044,0.000006835878,0.0000055300143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988882,0.00064129237,0.00014124498,0.0001682422,0.000036501573,0.0001245313],"domain_scores_gemma":[0.99967325,0.000035034547,0.00007714777,0.00016162629,0.0000042838683,0.00004865816],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014435034,0.000108950175,0.00020759972,0.000010098943,0.00017139707,0.0000086794835,0.00011417012,0.000089729794,0.0014416288],"category_scores_gemma":[0.000008670827,0.00011191017,0.000018761984,0.00008828915,0.00013358414,0.00014353343,0.00034089352,0.00032746914,0.000011837157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042428443,0.00021196855,0.0029283378,0.000047927104,0.000007492247,7.7590704e-7,0.0024205719,0.0000061600417,0.9929941,0.0000011814972,0.00019276438,0.0007644362],"study_design_scores_gemma":[0.0006412424,0.0004709997,0.48553574,0.000021943508,0.0000100992875,0.000012579165,0.00015759189,0.00004319221,0.51232564,0.000050713385,0.0005821807,0.0001480582],"about_ca_topic_score_codex":0.0004522905,"about_ca_topic_score_gemma":0.0007899276,"teacher_disagreement_score":0.4826074,"about_ca_system_score_codex":0.000056996952,"about_ca_system_score_gemma":0.000008321866,"threshold_uncertainty_score":0.9994712},"labels":[],"label_agreement":null},{"id":"W3039562665","doi":"10.1128/msphere.00380-20","title":"Lathosterol Oxidase (Sterol C-5 Desaturase) Deletion Confers Resistance to Amphotericin B and Sensitivity to Acidic Stress in Leishmania major","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University at Buffalo; National Institutes of Health; National Institute of Allergy and Infectious Diseases; McMaster University; National Institute of General Medical Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; Texas Tech University","keywords":"Sterol; Biology; Mutant; Leishmania; Leishmania braziliensis; Ergosterol; Biochemistry; Microbiology; Lathosterol; Kinetoplastida; Gene; Leishmaniasis; Genetics; Cutaneous leishmaniasis; Cholesterol; Immunology","score_opus":0.02418471255514283,"score_gpt":0.2787040473353866,"score_spread":0.2545193347802438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3039562665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9690723,0.0003021774,0.0005986759,0.027986433,0.0000387867,0.0012371863,0.000056012184,0.000080061895,0.00062840176],"genre_scores_gemma":[0.9912412,0.000039199655,0.0018895859,0.00613836,0.00010903491,0.00006746025,0.000012619867,0.000039597686,0.0004629104],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99793327,0.0002033179,0.00030808334,0.0006220134,0.00043437362,0.0004989327],"domain_scores_gemma":[0.9987845,0.00012305986,0.000051957548,0.00030974942,0.00014962972,0.0005811294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002926757,0.00025976766,0.0005193883,0.00008476021,0.00008930749,0.000078069206,0.000078946396,0.000094237155,0.00006598804],"category_scores_gemma":[0.00056768785,0.00024265502,0.00005017524,0.0004578714,0.000093730465,0.00013179787,0.00021646006,0.00030845794,0.00011777658],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0054022586,0.00022721368,0.2549585,0.0012014386,0.00014437172,0.0032671092,0.0072831777,0.000053083775,0.6918714,0.000064438056,0.02259147,0.012935498],"study_design_scores_gemma":[0.00442686,0.0012618456,0.88958776,0.0010833787,0.00007350508,0.000056285586,0.0038550796,0.00032172436,0.08614149,0.000014049105,0.012596754,0.00058125437],"about_ca_topic_score_codex":0.00039591905,"about_ca_topic_score_gemma":0.008458714,"teacher_disagreement_score":0.63462925,"about_ca_system_score_codex":0.0001701064,"about_ca_system_score_gemma":0.000056808512,"threshold_uncertainty_score":0.98951846},"labels":[],"label_agreement":null},{"id":"W3046094389","doi":"10.1128/msphere.00478-20","title":"The Challenges of Using Oropharyngeal Samples To Measure Pneumococcal Carriage in Adults","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Health and Medical Research Council; National Institutes of Health; Department of Foreign Affairs and Trade, Australian Government; State Government of Victoria; Pfizer; Australian Government; Sanofi Pasteur; Murdoch Children's Research Institute; Veski; University of Melbourne; Institute of Infection and Immunity; GlaxoSmithKline; Bill and Melinda Gates Foundation; Emory University; National Institute of Allergy and Infectious Diseases; Children’s Hospital of Wisconsin Research Institute; Sanofi","keywords":"Streptococcus pneumoniae; Serotype; Multiplex polymerase chain reaction; Microbiology; Latex fixation test; Multiplex; Biology; Polymerase chain reaction; Antibody; Immunology; Gene; Bioinformatics; Genetics; Antibiotics","score_opus":0.06678862037445353,"score_gpt":0.29000704605387845,"score_spread":0.2232184256794249,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046094389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866809,0.0013310148,0.0000234015,0.009603617,0.000106403844,0.00031131675,0.000008621892,0.0000307356,0.0019039599],"genre_scores_gemma":[0.99921036,0.00009105704,0.00005302395,0.00041138136,0.00019515862,0.000012255998,6.2671774e-7,0.000014516792,0.000011616925],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99925405,0.000058995225,0.00019575955,0.00016357328,0.00015853035,0.00016907978],"domain_scores_gemma":[0.99953246,0.000059523467,0.000037630463,0.00016101461,0.00006295537,0.00014643838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009259079,0.00009422736,0.00021507993,0.00001918638,0.00007192324,0.000006129762,0.00007919723,0.000064033426,0.000038414895],"category_scores_gemma":[0.00018009386,0.00006262093,0.00006442488,0.00018870822,0.000041241798,0.000027918779,0.000035881934,0.00016558943,0.00001586323],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083747925,0.0002690647,0.13798437,0.00077635364,0.00014680596,0.00019670713,0.009310392,0.0006066556,0.7871749,0.0012701101,0.0004408937,0.060986273],"study_design_scores_gemma":[0.0051697227,0.0021172964,0.8851903,0.0017458576,0.00017348983,0.00010595077,0.0131856045,0.0013233904,0.014187993,0.00014555716,0.07608202,0.0005728336],"about_ca_topic_score_codex":0.00007965716,"about_ca_topic_score_gemma":0.00064722094,"teacher_disagreement_score":0.7729869,"about_ca_system_score_codex":0.00003289682,"about_ca_system_score_gemma":0.00008952537,"threshold_uncertainty_score":0.25536075},"labels":[],"label_agreement":null},{"id":"W3048675971","doi":"10.1128/msphere.00484-20","title":"Root Microbiome Modulates Plant Growth Promotion Induced by Low Doses of Glyphosate","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Government of Canada; National Institutes of Health; Universidad San Francisco de Quito; Natural Sciences and Engineering Research Council of Canada; Howard Hughes Medical Institute","keywords":"Glyphosate; Microbiome; Plant growth; Biology; Promotion (chess); Plant root; Root (linguistics); Botany; Biotechnology; Horticulture; Genetics","score_opus":0.016326687635328678,"score_gpt":0.18957050778384424,"score_spread":0.17324382014851555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048675971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964751,0.00009392755,5.0305425e-7,0.002781426,0.00004764471,0.00015834688,0.00021582197,0.00008237609,0.00014485563],"genre_scores_gemma":[0.99949676,0.0000020829425,0.000052534968,0.00015612386,0.00008348189,0.000005836876,0.00016089893,0.0000015839379,0.000040704923],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991548,0.00004562157,0.00019222761,0.00025388558,0.0001323469,0.00022114044],"domain_scores_gemma":[0.99968857,0.0000337957,0.000101852456,0.000036875572,0.00004901936,0.000089899244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056826004,0.00013137505,0.0001769856,0.0000032805378,0.000068953945,0.000030295108,0.00022695554,0.00010135114,0.00046921388],"category_scores_gemma":[0.00003207065,0.000052553183,0.00007569825,0.00029835766,0.000030033038,0.000096963515,0.00006778512,0.00008423767,0.00006902031],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019928255,0.00008141505,0.004323497,0.000024504108,0.000017380808,0.0000016103548,0.000086719694,1.0698675e-7,0.99138033,0.000014061091,0.0022218297,0.0018286301],"study_design_scores_gemma":[0.00014585369,0.00034066092,0.025288409,0.000030095465,0.000010637501,0.0000018501232,0.000059795664,0.000026956312,0.9735632,0.000089132845,0.0002916643,0.00015174446],"about_ca_topic_score_codex":0.00049304543,"about_ca_topic_score_gemma":0.0001100993,"teacher_disagreement_score":0.020964911,"about_ca_system_score_codex":0.0000144753585,"about_ca_system_score_gemma":0.00000501254,"threshold_uncertainty_score":0.5137563},"labels":[],"label_agreement":null},{"id":"W3080677031","doi":"10.1128/msphere.00748-20","title":"Antibiotic Resistance in Vibrio cholerae: Mechanistic Insights from IncC Plasmid-Mediated Dissemination of a Novel Family of Genomic Islands Inserted at <i>trmE</i>","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Vibrio cholerae; Plasmid; Cholera; Biology; Antibiotic resistance; Mobile genetic elements; Genomic island; Multiple drug resistance; Microbiology; Drug resistance; Genetics; Gene; Virology; Antibiotics; Bacteria","score_opus":0.011773531613149266,"score_gpt":0.2392122820354617,"score_spread":0.22743875042231243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3080677031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99685764,0.0014124578,0.00032557492,0.00011922705,0.000044484666,0.000234215,0.00039508255,0.000009684988,0.0006016369],"genre_scores_gemma":[0.99830294,0.00031027137,0.0006101132,0.00012590202,0.00004636406,0.0000076165193,0.0004860348,0.00002526838,0.00008548797],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879265,0.000058631314,0.00037337156,0.00037872838,0.00020011149,0.00019650212],"domain_scores_gemma":[0.9993306,0.00006498683,0.00017620246,0.0002475346,0.00010797091,0.000072747236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000055045202,0.00017406559,0.00032957984,0.000032765514,0.000037041696,0.000009353328,0.00022722961,0.00014697037,0.000023019264],"category_scores_gemma":[0.00033486864,0.00016746648,0.00005887925,0.00022123824,0.00009462793,0.0000067542805,0.00026373268,0.00009501323,0.0000069417174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053030456,0.00010251748,0.004393855,0.00012125058,0.000070942515,0.0000053631807,0.0006742235,0.000016620066,0.99321765,0.000010144783,0.00081829523,0.000038843784],"study_design_scores_gemma":[0.0019985128,0.00029972842,0.21469495,0.0001990577,0.000023369186,5.109607e-7,0.0002692011,0.00097324984,0.7795781,0.00002495879,0.0016905946,0.0002477969],"about_ca_topic_score_codex":0.00007704895,"about_ca_topic_score_gemma":0.0012073147,"teacher_disagreement_score":0.21363956,"about_ca_system_score_codex":0.000043632477,"about_ca_system_score_gemma":0.00008709618,"threshold_uncertainty_score":0.6829085},"labels":[],"label_agreement":null},{"id":"W3084049814","doi":"10.1128/msphere.00498-20","title":"Oxalate-Degrading Bacillus subtilis Mitigates Urolithiasis in a Drosophila melanogaster Model","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Kidney Stones and Urolithiasis Treatments","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"W. Garfield Weston Foundation","keywords":"Bacillus subtilis; Drosophila melanogaster; Oxalate; Chemistry; Microbiology; Food science; Biology; Biochemistry; Bacteria; Genetics; Organic chemistry; Gene","score_opus":0.03516248514026261,"score_gpt":0.25899063188580346,"score_spread":0.22382814674554086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3084049814","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9743591,0.0007248652,0.000049995397,0.011711828,0.0000627051,0.00037235642,0.00003929172,0.00012974309,0.012550128],"genre_scores_gemma":[0.9913271,0.00006375262,0.0016384056,0.0053623747,0.000118999786,0.00003519557,0.000036893864,0.000058782436,0.0013584752],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983927,0.000036948786,0.00035553722,0.00048252367,0.0002891997,0.00044307258],"domain_scores_gemma":[0.99908215,0.000032027463,0.000066287146,0.0002868131,0.000042416556,0.0004903245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007290355,0.0002852585,0.00049192837,0.00005152285,0.000060477618,0.0000312833,0.000120937744,0.00016030387,0.0003561986],"category_scores_gemma":[0.0000911569,0.00023931013,0.00017574408,0.00031461997,0.00005451412,0.00012702876,0.00006644893,0.00028351604,0.00020220474],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006944529,0.00041815225,0.97756785,0.000274218,0.00024574462,0.00064068404,0.0047835032,0.000706668,0.0059364396,0.00040210065,0.003257925,0.0050722393],"study_design_scores_gemma":[0.029509414,0.002212976,0.47136113,0.000981781,0.0012032368,0.0004899459,0.002854077,0.44567314,0.013739052,0.003005094,0.026985982,0.0019841879],"about_ca_topic_score_codex":0.000098707686,"about_ca_topic_score_gemma":0.00001179527,"teacher_disagreement_score":0.50620675,"about_ca_system_score_codex":0.00009253687,"about_ca_system_score_gemma":0.00010046172,"threshold_uncertainty_score":0.9758784},"labels":[],"label_agreement":null},{"id":"W3084266909","doi":"10.1128/msphere.00594-20","title":"Binding of Leishmania infantum Lipophosphoglycan to the Midgut Is Not Sufficient To Define Vector Competence in <i>Lutzomyia longipalpis</i> Sand Flies","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Leishmania infantum; Midgut; Biology; Lipophosphoglycan; Leishmania; Visceral leishmaniasis; Microbiology; Mutant; Parasite hosting; Leishmaniasis; Immunology; Ecology; Leishmania donovani; Larva; Biochemistry","score_opus":0.03555635032794572,"score_gpt":0.2849193157093111,"score_spread":0.2493629653813654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3084266909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9437652,0.0009121467,0.000059686477,0.051961534,0.00014971434,0.0010898865,0.00008888127,0.000053663367,0.0019192505],"genre_scores_gemma":[0.9911205,0.000117530246,0.0009315562,0.007018339,0.00015882136,0.00008114503,0.0000070422616,0.000043519212,0.0005215054],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99731,0.00007374095,0.0005493884,0.0005581435,0.00086571247,0.0006430451],"domain_scores_gemma":[0.998507,0.00021778383,0.000099762045,0.0005494442,0.00022651922,0.00039947583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035404635,0.00028874623,0.00067708874,0.00010325356,0.00013716494,0.00005280488,0.00048518443,0.000072263036,0.00044269365],"category_scores_gemma":[0.00089851784,0.00020937168,0.00012698288,0.0014506247,0.00013581329,0.00006864528,0.00051500474,0.00039406616,0.00042761746],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003102972,0.00060125464,0.48913136,0.0011594226,0.0003675932,0.00041626408,0.05428112,0.00086905056,0.20430446,0.00064287503,0.2381607,0.00696294],"study_design_scores_gemma":[0.0032327129,0.0032329056,0.64445883,0.0011698335,0.000110648616,0.000032824013,0.0106837405,0.0009031956,0.20450848,0.000012140867,0.13093042,0.000724231],"about_ca_topic_score_codex":0.00089584064,"about_ca_topic_score_gemma":0.001690978,"teacher_disagreement_score":0.15532751,"about_ca_system_score_codex":0.0001408861,"about_ca_system_score_gemma":0.00016715168,"threshold_uncertainty_score":0.8537929},"labels":[],"label_agreement":null},{"id":"W3090909822","doi":"10.1128/msphere.00451-20","title":"Assessing the Variation within the Oral Microbiome of Healthy Adults","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Nova Scotia Health Research Foundation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Variation (astronomy); Microbiome; Oral Microbiome; Psychology; Medicine; Biology; Bioinformatics","score_opus":0.042836217994517055,"score_gpt":0.34212987682760837,"score_spread":0.29929365883309134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3090909822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99187666,0.0004653996,0.0002597895,0.0060344897,0.00034197426,0.00020267261,0.000041011823,0.000025001498,0.000752997],"genre_scores_gemma":[0.9980846,0.0000060508637,0.0003098458,0.0011463538,0.00012047779,0.0000054346197,0.000021651505,0.000010109648,0.00029547905],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990366,0.0003279729,0.0002205367,0.00016195548,0.00009145175,0.00016144646],"domain_scores_gemma":[0.9994706,0.00010011122,0.00011903049,0.00020234607,0.00007179999,0.000036118257],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033407094,0.000078634555,0.00013053832,0.0000074577893,0.0002237456,0.00009173076,0.00032266442,0.000094667674,0.0010095447],"category_scores_gemma":[0.00010572779,0.000043381355,0.00005560341,0.00023590428,0.00014434078,0.000119388664,0.000092150636,0.0002993781,0.00030880078],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020112775,0.00028910526,0.16069874,0.00081500836,0.0003754396,0.0001047059,0.017716689,0.00025150937,0.7004499,0.003717632,0.089762464,0.023807563],"study_design_scores_gemma":[0.0039442936,0.0010021095,0.89147836,0.00023689924,0.00008397261,0.0002152686,0.008315826,0.0029524856,0.026697792,0.00051984383,0.06399563,0.0005575185],"about_ca_topic_score_codex":0.0005148924,"about_ca_topic_score_gemma":0.0005565192,"teacher_disagreement_score":0.7307796,"about_ca_system_score_codex":0.000016237513,"about_ca_system_score_gemma":0.00008599025,"threshold_uncertainty_score":0.9999037},"labels":[],"label_agreement":null},{"id":"W3093419969","doi":"10.1128/msphere.00646-20","title":"High-Resolution Genome-Wide Occupancy in <i>Candida</i> spp. Using ChEC-seq","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; ChIP-on-chip; Chromatin immunoprecipitation; ChIP-sequencing; Chromatin; Tiling array; Genetics; Candida albicans; Genome; Computational biology; DNA microarray; Gene; Promoter; Gene expression; Nucleosome","score_opus":0.03169606090837775,"score_gpt":0.2690931908869091,"score_spread":0.23739712997853132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093419969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992226,0.0018520458,0.001530682,0.0014599982,0.00008123363,0.0002931066,0.000011398498,0.00006900893,0.002476499],"genre_scores_gemma":[0.9949833,0.000080982994,0.0020208985,0.0021693478,0.00023729357,0.0000044811522,0.000019881343,0.000022505372,0.00046128553],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998729,0.00005371908,0.00030225705,0.00035937544,0.00023576565,0.00031987322],"domain_scores_gemma":[0.9994133,0.000038110153,0.00006157366,0.0002539653,0.000051521103,0.00018149072],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015484777,0.00015365492,0.00034448906,0.000020346972,0.000071033195,0.00001577058,0.00008675211,0.00011281927,0.0008657365],"category_scores_gemma":[0.00023092919,0.00014110861,0.00009251338,0.00033202706,0.000060613547,0.00009724118,0.000043523298,0.00031749843,0.00019969855],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067246606,0.00010771332,0.9589946,0.0002506453,0.00002513472,0.00017102234,0.00039638646,0.00014551906,0.035811298,0.0000590605,0.0023138872,0.0010522235],"study_design_scores_gemma":[0.0020675585,0.00021113157,0.9823602,0.0001935644,0.000066502704,0.0000064065357,0.00063154486,0.0016177072,0.002744921,0.0001642905,0.00966989,0.00026631696],"about_ca_topic_score_codex":0.00037927227,"about_ca_topic_score_gemma":0.00040879886,"teacher_disagreement_score":0.033066377,"about_ca_system_score_codex":0.00017325365,"about_ca_system_score_gemma":0.00015621656,"threshold_uncertainty_score":0.9479208},"labels":[],"label_agreement":null},{"id":"W3095003774","doi":"10.1128/msphere.00932-20","title":"Functional Characterization of Core Regulatory Genes Involved in Sporulation of the Nematophagous Fungus Purpureocillium lavendulum","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Applied Basic Research Foundation of Yunnan Province; Yunnan Provincial Science and Technology Department; National Natural Science Foundation of China","keywords":"Biology; Fungus; Conidiation; Nematode; Conidium; Biological pest control; Spore; Pathogenic fungus; Secondary metabolite; Botany; Gene; Ecology; Virulence; Genetics","score_opus":0.03673421759069377,"score_gpt":0.19505028812480907,"score_spread":0.15831607053411528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3095003774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99811214,0.00008906498,0.000010353413,0.0012349554,0.000111026704,0.00019074023,0.000025374415,0.000018421353,0.0002079395],"genre_scores_gemma":[0.99931115,0.000030079325,0.0000065660233,0.0002060286,0.00010352974,0.000008084501,0.00012105438,0.0000010273618,0.00021247331],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993081,0.000030183797,0.00025968353,0.00013176828,0.0001889513,0.00008129992],"domain_scores_gemma":[0.99963266,0.000017262924,0.00021957075,0.000043284163,0.00006767841,0.000019556264],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058097878,0.00007925327,0.00015468086,0.000005413356,0.00005305623,0.000007890472,0.00010933762,0.000044397486,0.0003695372],"category_scores_gemma":[0.000012903211,0.000032325417,0.00006103096,0.00037072744,0.000041636897,0.00008269535,0.00007396147,0.000039996616,0.0000046359146],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027731527,0.000029706482,0.28405753,0.00004117344,0.000009896089,4.4964318e-7,0.0001221197,0.000019854586,0.71163374,0.0006248803,0.00015042728,0.0032825002],"study_design_scores_gemma":[0.000121755635,0.000025805912,0.9804218,0.000023833132,0.000008286886,1.9540101e-7,0.00033169414,0.00016521888,0.01703646,0.00008347843,0.0017201068,0.000061397084],"about_ca_topic_score_codex":0.000015945105,"about_ca_topic_score_gemma":0.00010162421,"teacher_disagreement_score":0.6963642,"about_ca_system_score_codex":0.0000072519492,"about_ca_system_score_gemma":0.0000048907245,"threshold_uncertainty_score":0.40461734},"labels":[],"label_agreement":null},{"id":"W3095219632","doi":"10.1128/msphere.00512-20","title":"Sediment Metagenomes as Time Capsules of Lake Microbiomes","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Sediment; Microbiome; Environmental science; Geology; Biology; Geomorphology; Bioinformatics","score_opus":0.007991984981461562,"score_gpt":0.19482635429783937,"score_spread":0.1868343693163778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3095219632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9701295,0.00009793537,0.0000065268996,0.0010963912,0.000036185294,0.00010267597,0.000031514912,0.000024599682,0.0284747],"genre_scores_gemma":[0.9946793,0.000014560215,0.00056370354,0.0018773098,0.000019468205,0.0000021906874,0.00004405743,0.0000080387545,0.0027914224],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994486,0.00010142772,0.00012878841,0.00013592608,0.00004444031,0.0001407941],"domain_scores_gemma":[0.9996866,0.00003733575,0.000056356937,0.0001585136,0.000003739853,0.000057466674],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00006728468,0.00008676216,0.00017122194,0.0000048947522,0.00006878638,0.0000035567105,0.00026857416,0.00006300334,0.13688579],"category_scores_gemma":[0.00001397661,0.0000782915,0.00005446643,0.000104027655,0.00018786092,0.000043361495,0.00026173517,0.000097734584,0.0062231505],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026921995,0.00006018976,0.0028113006,0.000012560578,0.00003846492,0.0000035025746,0.0008980777,0.00013965047,0.93796766,0.00006640396,0.057184532,0.0007907189],"study_design_scores_gemma":[0.00057380676,0.00049587863,0.023713287,0.000007999333,0.00005433004,0.000009164819,0.00028253338,0.000076968536,0.17863025,0.00088314293,0.79494905,0.0003235737],"about_ca_topic_score_codex":0.0001336876,"about_ca_topic_score_gemma":0.0007875085,"teacher_disagreement_score":0.7593374,"about_ca_system_score_codex":0.000013346373,"about_ca_system_score_gemma":0.000011299726,"threshold_uncertainty_score":0.99455065},"labels":[],"label_agreement":null},{"id":"W3112222532","doi":"10.1128/msphere.00562-20","title":"Nasal Tissue Extraction Is Essential for Characterization of the Murine Upper Respiratory Tract Microbiota","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada","keywords":"Respiratory tract; Extraction (chemistry); Respiratory system; Medicine; Biology; Microbiology; Chemistry; Anatomy; Chromatography","score_opus":0.012991187130613526,"score_gpt":0.27434345108969144,"score_spread":0.2613522639590779,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3112222532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961337,0.00014092882,0.0013393656,0.0016228125,0.0002064028,0.00032178545,0.0001433084,0.000006803643,0.00008492076],"genre_scores_gemma":[0.99636126,0.000026581103,0.00019946278,0.002182371,0.00045657996,0.000008829078,0.00014196655,0.000020110081,0.0006028248],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994176,0.0000293147,0.0001764024,0.00020506348,0.000045205576,0.0001264338],"domain_scores_gemma":[0.99961054,0.000003314893,0.00011727167,0.00016862384,0.000059532736,0.000040688687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047442114,0.000090454785,0.00009778881,0.000005877703,0.00006841926,0.000010447516,0.00011648318,0.00012916478,0.00014835082],"category_scores_gemma":[0.000016465598,0.00007453161,0.000076858574,0.00005499267,0.00003125548,0.0000042995325,0.00003802989,0.00006404357,0.000008643574],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007926693,0.000046827816,0.0012033834,0.000084902844,0.000012377609,2.0087914e-7,0.000065917804,0.0000013226405,0.99210346,0.000009878969,0.005423659,0.00096879],"study_design_scores_gemma":[0.00035696643,0.00012993379,0.025224574,0.000008573828,0.000011659673,0.000002531847,0.000015813786,0.0000070484452,0.7409416,0.0000019445445,0.23323402,0.00006536799],"about_ca_topic_score_codex":0.000006426045,"about_ca_topic_score_gemma":0.0000071374757,"teacher_disagreement_score":0.2511619,"about_ca_system_score_codex":0.0000070705373,"about_ca_system_score_gemma":0.000075472766,"threshold_uncertainty_score":0.30393106},"labels":[],"label_agreement":null},{"id":"W3121942498","doi":"10.1128/msphere.00862-20","title":"The Fifth International Neonatal and Maternal Immunization Symposium (INMIS 2019): Securing Protection for the Next Generation","year":2021,"lang":"en","type":"review","venue":"mSphere","topic":"COVID-19 Impact on Reproduction","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Medical Research Council; Canadian Institutes of Health Research; Sanofi Pasteur; Seqirus; Canadian Child Health Clinician Scientist Program; Centers for Disease Control and Prevention; European Society for Paediatric Infectious Diseases; Impacting Research Innovation and Technology; Moderna; Fonds De La Recherche Scientifique - FNRS; Michael Smith Health Research BC; BC Children's Hospital; BC Children’s Hospital Foundation; Government of Canada; Children's Hospital Foundation; GlaxoSmithKline; Bill and Melinda Gates Foundation; Pfizer; National Institutes of Health; Novavax; Janssen Pharmaceuticals; Gilead Sciences; Sanofi","keywords":"Medicine; Immunization; Neonatal mortality; Pediatrics; Maternal health; Environmental health; Infant mortality; Immunology; Population; Health services","score_opus":0.09474973187413827,"score_gpt":0.3570544027247842,"score_spread":0.26230467085064596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3121942498","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019068179,0.9862338,0.005534137,0.0034434025,0.001949211,0.0025245377,0.000030674557,0.000054212844,0.000039370938],"genre_scores_gemma":[0.000284359,0.9925899,0.00018246686,0.000082631464,0.002507751,0.00048273167,0.00042852605,0.0000620556,0.003379572],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985816,0.00011947047,0.00042304647,0.0003966812,0.00029775215,0.00018143782],"domain_scores_gemma":[0.9987423,0.00015852567,0.0003241701,0.00049217604,0.00023563484,0.00004721656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048399766,0.00025433901,0.00040956118,0.00004895023,0.0004353275,0.0003622801,0.00016500604,0.00017946912,0.000092811315],"category_scores_gemma":[0.00033835796,0.00014962269,0.00021034857,0.00017494638,0.000050700815,0.00018256059,0.00010346654,0.00033772198,0.000012545823],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030319348,0.000014137694,0.00001081668,0.0020594737,0.0002639095,0.0000027478923,0.00015246516,0.000029237392,0.00017775378,0.00009105449,0.0011990843,0.995969],"study_design_scores_gemma":[0.0003219255,0.00006291446,0.000037884525,0.0021496962,0.0005462691,0.00043543315,0.00007081996,0.002615516,0.00009566711,0.000011797804,0.9935091,0.00014298655],"about_ca_topic_score_codex":0.00014759424,"about_ca_topic_score_gemma":0.000049690716,"teacher_disagreement_score":0.995826,"about_ca_system_score_codex":0.00031337375,"about_ca_system_score_gemma":0.00028370146,"threshold_uncertainty_score":0.6101436},"labels":[],"label_agreement":null},{"id":"W3126731077","doi":"10.1128/msphere.00066-21","title":"Extensive Genetic Diversity and Widespread Azole Resistance in Greenhouse Populations of Aspergillus fumigatus in Yunnan, China","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Plant Pathogen Control","field":"Agricultural and Biological Sciences","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Science Foundation of Hainan Province; National Natural Science Foundation of China","keywords":"Aspergillus fumigatus; Azole; Biology; Voriconazole; Itraconazole; Fungicide; Genotype; Drug resistance; Biotechnology; Veterinary medicine; Agronomy; Microbiology; Gene; Genetics; Medicine; Antifungal","score_opus":0.018078863661447165,"score_gpt":0.1965758021459958,"score_spread":0.17849693848454862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3126731077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963913,0.00254488,0.0000016291,0.0004282178,0.000044221873,0.00010128781,0.00005306824,0.000010774341,0.00042464366],"genre_scores_gemma":[0.9990893,0.00005745847,0.00049148244,0.000061459745,0.000020692842,0.000002552924,0.00001454992,6.433745e-7,0.00026185327],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99929106,0.00007367875,0.00015787358,0.00021757754,0.000109944594,0.00014983526],"domain_scores_gemma":[0.99972576,0.000084958774,0.00004953519,0.00005437724,0.000041194642,0.000044149067],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006013818,0.00008075486,0.00016471061,0.000006894431,0.00012920976,0.000009886574,0.00009212565,0.00006331124,0.000089034205],"category_scores_gemma":[0.00009141946,0.00004080019,0.000030994644,0.0002782275,0.00003536677,0.000065151035,0.00018412474,0.000084677755,0.0000030138262],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044548637,0.00005403484,0.77489346,0.000013384033,0.000003612741,0.00018813918,0.00033131975,0.00006898484,0.21958481,0.0001538712,0.00007828896,0.004585536],"study_design_scores_gemma":[0.00021772098,0.000025705984,0.99688745,0.00005191352,0.000005346694,0.0000051099346,0.00018082318,0.000058145488,0.0012957716,0.0009629427,0.00021974176,0.00008934901],"about_ca_topic_score_codex":0.0017968819,"about_ca_topic_score_gemma":0.20236664,"teacher_disagreement_score":0.22199395,"about_ca_system_score_codex":0.000021092112,"about_ca_system_score_gemma":0.000007561302,"threshold_uncertainty_score":0.8121881},"labels":[],"label_agreement":null},{"id":"W3132756055","doi":"10.1128/msphere.01250-20","title":"Aspergillus fumigatus Strain-Specific Conidia Lung Persistence Causes an Allergic Broncho-Pulmonary Aspergillosis-Like Disease Phenotype","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; Dartmouth College; National Institute of General Medical Sciences; Canadian Institute for Advanced Research; Memorial Sloan-Kettering Cancer Center; Cystic Fibrosis Foundation; National Cancer Institute; National Institutes of Health; National Science Foundation","keywords":"Allergic bronchopulmonary aspergillosis; Aspergillus fumigatus; Cystic fibrosis; Aspergillus; Aspergillosis; Pulmonary aspergillosis; Lung; Immunology; Medicine; Disease; Phenotype; Fungus; Microbiology; Lung disease; Biology; Pathology; Immunoglobulin E; Antibody; Internal medicine","score_opus":0.03244788078379739,"score_gpt":0.26873273721059465,"score_spread":0.23628485642679725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132756055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.942489,0.035920016,0.000059875314,0.00089993485,0.0005201797,0.0004144372,0.00016923735,0.00021560039,0.019311665],"genre_scores_gemma":[0.9847337,0.002104663,0.0005325505,0.0011370805,0.0004093898,0.000022960117,0.00032077578,0.000074589174,0.010664264],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99683535,0.00017249545,0.00047279577,0.0011028403,0.0007079466,0.000708547],"domain_scores_gemma":[0.99712235,0.00009380918,0.00009881031,0.0013147861,0.00041503887,0.0009552193],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018079935,0.000433231,0.0005972015,0.000037537895,0.00032884645,0.00009101346,0.00024933857,0.0002017835,0.007130248],"category_scores_gemma":[0.00012405004,0.0004043419,0.00037233703,0.00038998216,0.00032924043,0.00030704826,0.00010701173,0.00046519778,0.0002496894],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004090518,0.0037924326,0.7853751,0.0017224203,0.0007651571,0.018038161,0.0019984865,0.00017840395,0.13604705,0.0036878535,0.016193088,0.028111288],"study_design_scores_gemma":[0.0013356616,0.0002224091,0.94766885,0.00042288075,0.00030403453,0.00009033221,0.004758972,0.0005752651,0.0008656843,0.00021445275,0.042842474,0.0006989713],"about_ca_topic_score_codex":0.00004239398,"about_ca_topic_score_gemma":0.00040459208,"teacher_disagreement_score":0.16229373,"about_ca_system_score_codex":0.00029383754,"about_ca_system_score_gemma":0.00068028347,"threshold_uncertainty_score":0.99984086},"labels":[],"label_agreement":null},{"id":"W3134016852","doi":"10.1128/msphere.00143-21","title":"GraXRS-Dependent Resistance of Staphylococcus aureus to Human Osteoarthritic Synovial Fluid","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Periprosthetic; Staphylococcus aureus; Osteoarthritis; Joint replacement; Medicine; Synovial fluid; Arthroplasty; Antibiotics; Joint disease; Disease; Surgery; Internal medicine; Microbiology; Pathology; Biology; Bacteria","score_opus":0.01473014342567636,"score_gpt":0.2790203929948404,"score_spread":0.264290249569164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134016852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9688866,0.0032966773,0.0004916544,0.001096434,0.00033967802,0.00070203026,0.00013909387,0.00011629368,0.024931505],"genre_scores_gemma":[0.9784697,0.0000663737,0.003453399,0.0007467243,0.0002712964,0.00003905456,0.00003764987,0.00007120462,0.016844539],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99739474,0.00008815679,0.00067123334,0.0006321731,0.00064347364,0.0005702505],"domain_scores_gemma":[0.9978164,0.00010436724,0.00014507475,0.0010236984,0.0005851458,0.00032534986],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018947427,0.00030978213,0.0006981101,0.00008380975,0.00015066948,0.00002811192,0.00024946363,0.00017992382,0.0013485441],"category_scores_gemma":[0.00042074165,0.00032084147,0.00025081384,0.00059573975,0.00016810252,0.0000741397,0.00015239316,0.00028539376,0.00017778629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045327438,0.00029438123,0.0049814465,0.00053078646,0.00008700267,0.00094618736,0.00027770773,0.000017602057,0.96179205,0.0014509836,0.027970823,0.0011977769],"study_design_scores_gemma":[0.0045264475,0.0007734924,0.0249986,0.0022272696,0.00025486422,0.00003964654,0.0012745816,0.0000027350736,0.87105286,0.0011280415,0.09292354,0.000797933],"about_ca_topic_score_codex":0.000051802846,"about_ca_topic_score_gemma":0.0028614313,"teacher_disagreement_score":0.090739176,"about_ca_system_score_codex":0.00017454976,"about_ca_system_score_gemma":0.0004548225,"threshold_uncertainty_score":0.99992436},"labels":[],"label_agreement":null},{"id":"W3136192664","doi":"10.1128/msphere.00021-21","title":"Microbial Diversity and Mercury Methylation Activity in Periphytic Biofilms at a Run-of-River Hydroelectric Dam and Constructed Wetlands","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University; Université de Montréal; Université du Québec à Montréal","funders":"","keywords":"Wetland; Hydroelectricity; Mercury (programming language); Methylmercury; Environmental science; Ecology; Geography; Biology; Bioaccumulation","score_opus":0.012192202824286813,"score_gpt":0.22087312534754266,"score_spread":0.20868092252325585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3136192664","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981923,0.00023138251,0.000017108816,0.00006390653,0.000036385958,0.00007638747,0.000010915741,0.00000822295,0.0013634058],"genre_scores_gemma":[0.99933594,0.00016556268,0.00022680814,0.00003061491,0.0000058595033,0.0000011956653,0.000003959939,0.0000032066246,0.00022685617],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99944717,0.00005766655,0.00008667788,0.00018153696,0.000101983955,0.00012499567],"domain_scores_gemma":[0.9997758,0.00004534342,0.000050419818,0.00007348261,0.000007703649,0.000047217338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007235397,0.00008240038,0.00014629407,0.000017163797,0.00021532808,0.0000070946453,0.00003157126,0.000047795696,0.000723896],"category_scores_gemma":[0.000029647195,0.00007892096,0.000019195148,0.00023567547,0.00022693287,0.0001343493,0.00043408488,0.00006335851,0.000007053901],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001600564,0.000020473844,0.7556029,0.0000114485565,0.000008713027,0.0000053284048,0.0013939711,0.0000053733456,0.23759604,0.0000047335993,0.00009817726,0.0052368417],"study_design_scores_gemma":[0.0004973174,0.000027927204,0.9571329,0.000008752925,0.000020760495,0.000017908389,0.00018748308,0.00025424134,0.041476503,0.00005912566,0.00021949518,0.000097626275],"about_ca_topic_score_codex":0.00056105794,"about_ca_topic_score_gemma":0.0009568851,"teacher_disagreement_score":0.20152996,"about_ca_system_score_codex":0.000068311136,"about_ca_system_score_gemma":0.000008299088,"threshold_uncertainty_score":0.79261535},"labels":[],"label_agreement":null},{"id":"W3143012963","doi":"10.1128/msphere.01019-20","title":"Evenness-Richness Scatter Plots: a Visual and Insightful Representation of Shannon Entropy Measurements for Ecological Community Analysis","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Complex Network Analysis Techniques","field":"Physics and Astronomy","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Species evenness; Species richness; Diversity index; Mathematics; Statistics; Alpha diversity; Entropy (arrow of time); Generalized entropy index; Ecology; Physics; Biology; Cluster analysis","score_opus":0.052794688104532285,"score_gpt":0.33644407582456104,"score_spread":0.28364938772002873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3143012963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92812854,0.000066793546,0.07096867,0.00006840487,0.000017580682,0.00017585816,0.000018017612,0.000026899981,0.0005292254],"genre_scores_gemma":[0.9969106,0.0000025306153,0.0025616197,0.000028816346,0.00006369221,0.00007432354,0.00025945154,0.000010032447,0.00008896474],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99888,0.00029706236,0.00029552795,0.00021609262,0.00015872731,0.00015256027],"domain_scores_gemma":[0.9990553,0.00016247922,0.00016378559,0.0002973923,0.00027746038,0.00004357843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021234926,0.00012277182,0.00039631687,0.000053920907,0.00015439205,0.00004248587,0.0001236244,0.00004208261,0.00061489653],"category_scores_gemma":[0.000019241415,0.0001144485,0.00022101197,0.0006819775,0.000046056433,0.00008779919,0.00013684604,0.000117424395,0.0000014696267],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003822537,0.00072179316,0.9767608,0.000028665856,0.0015100528,7.729851e-7,0.0003013641,0.00016192488,0.00794601,0.00068428536,0.00044116567,0.01140493],"study_design_scores_gemma":[0.0018025896,0.00022212627,0.8808762,0.00006589848,0.0033815685,9.537079e-7,0.003405324,0.017003188,0.07293869,0.018830292,0.0009002142,0.0005729996],"about_ca_topic_score_codex":0.0003075856,"about_ca_topic_score_gemma":0.00041048662,"teacher_disagreement_score":0.09588466,"about_ca_system_score_codex":0.000024183122,"about_ca_system_score_gemma":0.00002358301,"threshold_uncertainty_score":0.6732686},"labels":[],"label_agreement":null},{"id":"W3158704474","doi":"10.1128/msphere.00011-21","title":"Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; Health Sciences North; University Health Network; Mount Sinai Hospital; Kingston Health Sciences Centre; University of Ottawa; Queen's University; Ontario Genomics; Agricultural Research Institute of Ontario; Sunnybrook Health Science Centre; Public Health Ontario; Ontario Institute for Cancer Research; University of Toronto; McMaster University","funders":"Dalhousie University; Sunnybrook Research Institute; McMaster University","keywords":"Genome; Biology; Transmission (telecommunications); Mutation rate; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Evolutionary biology; Genetics; Mutation; Population; Genetic variation; Coronavirus; Transmission rate; Virology; Disease; Infectious disease (medical specialty); Gene; Medicine","score_opus":0.03046642628335088,"score_gpt":0.2838425204099801,"score_spread":0.2533760941266292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3158704474","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962682,0.0005984446,0.00012526229,0.00016209194,0.000040349194,0.00014748008,0.000010914107,0.000005984246,0.002641246],"genre_scores_gemma":[0.99864435,0.000001771114,0.0002123395,0.001051619,0.000016150745,0.0000035801395,0.000006359955,0.000009242967,0.000054592678],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99893486,0.00007262692,0.00027854866,0.00018713043,0.00030732443,0.00021949445],"domain_scores_gemma":[0.99948287,0.00006267477,0.00008696239,0.00022785508,0.00012222746,0.00001740208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026853665,0.00009944382,0.00026120717,0.000031302083,0.000051604824,0.000011042059,0.000092120055,0.000069616195,0.000014032854],"category_scores_gemma":[0.000071856186,0.000080445854,0.000039998886,0.0002509114,0.00010303384,0.00006470376,0.00007736021,0.0003151315,4.692175e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061021205,0.000020649426,0.7292903,0.00012678246,0.00002655765,0.00013373634,0.00027532363,0.000007389702,0.26926973,0.00012899659,0.00002416016,0.00063532917],"study_design_scores_gemma":[0.0014523697,0.0001383574,0.72487295,0.00030460156,0.000054662476,0.0001088802,0.003916093,0.007727905,0.25982648,0.00047712788,0.00093593664,0.00018465592],"about_ca_topic_score_codex":0.9784278,"about_ca_topic_score_gemma":0.99904144,"teacher_disagreement_score":0.02061359,"about_ca_system_score_codex":0.0019506927,"about_ca_system_score_gemma":0.006664357,"threshold_uncertainty_score":0.99896693},"labels":[],"label_agreement":null},{"id":"W3159009756","doi":"10.1128/msphere.00365-21","title":"mSphere of Influence: Where the Pathogen Proteins Are","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada; Alfred P. Sloan Foundation","keywords":"Pathogen; Biology; Microbiology; Computational biology","score_opus":0.004623758380054566,"score_gpt":0.21358083094238337,"score_spread":0.2089570725623288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159009756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95103776,0.03500136,0.000052061398,0.0012486936,0.00013003494,0.00020485802,0.000044897588,0.000014586391,0.01226577],"genre_scores_gemma":[0.98931974,0.0018223698,0.00048070904,0.00028106902,0.00013205352,0.000021113816,0.000021308186,0.000019307266,0.00790232],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923635,0.00006977368,0.0001681624,0.00023244097,0.00011890187,0.00017437327],"domain_scores_gemma":[0.9992803,0.000008009767,0.000098127435,0.0003929286,0.00018543964,0.000035230725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007447832,0.00012478816,0.00014011232,0.0000033402832,0.00011785863,0.000014062384,0.00017378844,0.00020547956,0.00015328202],"category_scores_gemma":[0.00007491805,0.000081517,0.00010581907,0.000119012315,0.00013128518,0.0000018449754,0.00017156696,0.00014178803,0.000019920622],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003355574,0.00010303559,0.02821799,0.00013957602,0.00025981374,0.000031323598,0.00020168003,0.00013485515,0.94715226,0.00016334694,0.019156145,0.0044064284],"study_design_scores_gemma":[0.00069397636,0.00018400284,0.03938422,0.00019752591,0.00007043362,0.000053816188,0.0039296215,0.000009903605,0.54155594,0.00019388259,0.41338405,0.00034259702],"about_ca_topic_score_codex":0.000020460508,"about_ca_topic_score_gemma":0.00035431917,"teacher_disagreement_score":0.4055963,"about_ca_system_score_codex":0.00000516821,"about_ca_system_score_gemma":0.00008037856,"threshold_uncertainty_score":0.33241665},"labels":[],"label_agreement":null},{"id":"W3160307304","doi":"10.1128/msphere.00048-21","title":"Emergence of <i>Morganellaceae</i> Harboring <i>bla</i> <sub>IMP-27</sub> Metalloenzyme in Canada","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; Horizon Health Network; Public Health Ontario; BC Centre for Disease Control; Kelowna General Hospital; University of Manitoba; Institut National de Santé Publique du Québec; Provincial Laboratory of Public Health; University of Alberta; Toronto Public Health; Public Health Agency of Canada","funders":"","keywords":"Phylogenomics; Biology; Context (archaeology); Genome; Whole genome sequencing; Microbiology; Antimicrobial; Carbapenem; Genetics; Phylogenetics; Antibiotics; Gene; Clade","score_opus":0.005421736395346247,"score_gpt":0.1935979952327282,"score_spread":0.18817625883738195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3160307304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939989,0.0027664842,0.00011411704,0.000082516795,0.00040763261,0.000080586804,0.000027046164,0.000005006696,0.0025177277],"genre_scores_gemma":[0.9978329,0.00086575263,0.00049026724,0.00018048512,0.0000816354,0.0000024898272,0.00004204681,0.000028618155,0.00047582056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872595,0.00006140474,0.00034477448,0.00037937562,0.00018046137,0.0003080284],"domain_scores_gemma":[0.999233,0.000012306967,0.00011155853,0.00046559406,0.00010070753,0.00007680595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009025044,0.00016879188,0.00024368722,0.000010618588,0.000025930405,0.000011181201,0.00022325908,0.00009275088,0.00023803003],"category_scores_gemma":[0.00007975038,0.00018324095,0.00006631856,0.00022314757,0.00004260772,0.00000502622,0.00013456155,0.00009939062,0.0000069070256],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022250251,0.000026080663,0.08351133,0.000054621927,0.000034331682,0.00006095865,0.000010827901,0.00008847852,0.90616745,0.000023233086,0.009684677,0.00031575834],"study_design_scores_gemma":[0.000247281,0.000021673824,0.013262846,0.000044004388,0.000014300223,0.000013521211,0.00031614842,0.000018325363,0.9790541,0.000014816596,0.0067930426,0.00019996104],"about_ca_topic_score_codex":0.051962864,"about_ca_topic_score_gemma":0.7340197,"teacher_disagreement_score":0.68205684,"about_ca_system_score_codex":0.00003895032,"about_ca_system_score_gemma":0.00101246,"threshold_uncertainty_score":0.9543502},"labels":[],"label_agreement":null},{"id":"W3161239394","doi":"10.1128/msphere.00185-21","title":"Primed CRISPR-Cas Adaptation and Impaired Phage Adsorption in Streptococcus mutans","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"CRISPR; Bacteriophage; Biology; Virulence; Microbiology; Plasmid; Phagemid; Genome; Virology; Genetics; Gene; Escherichia coli","score_opus":0.01041386739591643,"score_gpt":0.2807219920823678,"score_spread":0.2703081246864514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3161239394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9817776,0.0022770138,0.015161866,0.00006261593,0.00007280032,0.00011658975,0.0000068775653,0.000012161471,0.00051245594],"genre_scores_gemma":[0.99811924,0.00017111615,0.0010678851,0.00004389678,0.0000713035,0.000018419154,0.000085515494,0.000013118707,0.00040950935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944687,0.000024974162,0.000117995245,0.00022034618,0.000055903765,0.00013389389],"domain_scores_gemma":[0.99974,0.0000053850595,0.000020110323,0.00015073351,0.000040489223,0.00004324927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005217217,0.00008821733,0.00007986497,0.000012294932,0.000015403653,0.000017267452,0.00003528623,0.00008661439,0.00005943116],"category_scores_gemma":[0.000044106768,0.0000967621,0.000025758769,0.00008604353,0.000013671202,0.0000029666032,0.000036425245,0.00005255815,0.000003724892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017524464,0.000033886965,0.006660475,0.000027933556,0.000014457541,0.000016654434,0.00023371934,0.001394906,0.9752648,0.00001709081,0.000240567,0.016078023],"study_design_scores_gemma":[0.00085285836,0.00009203628,0.06313839,0.000023789396,0.000012962755,0.000021740088,0.00086798484,0.0031544124,0.9270379,0.000047678695,0.004561463,0.00018882359],"about_ca_topic_score_codex":0.000025355706,"about_ca_topic_score_gemma":0.00065177376,"teacher_disagreement_score":0.056477908,"about_ca_system_score_codex":0.0000110652145,"about_ca_system_score_gemma":0.0000428578,"threshold_uncertainty_score":0.3945844},"labels":[],"label_agreement":null},{"id":"W3162611126","doi":"10.1128/msphere.00308-21","title":"Covariation of the Fecal Microbiome with Diet in Nonpasserine Birds","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Diabetes Canada; University of Toronto","funders":"","keywords":"Biology; Microbiome; Fusobacteria; Clostridia; Metagenomics; Feces; Zoology; Clostridiales; Proteobacteria; Host (biology); Gut microbiome; Clostridium; Ecology; 16S ribosomal RNA; Genetics; Bacteria; Gene","score_opus":0.00461512259952226,"score_gpt":0.22062299976756886,"score_spread":0.2160078771680466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3162611126","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986027,0.0002391744,0.00007469096,0.00044261885,0.000052850915,0.00007370461,0.000019423744,0.0000023366772,0.0004925076],"genre_scores_gemma":[0.998546,0.000036164307,0.00060347933,0.00020064431,0.00003384197,0.0000032297169,0.000064752065,0.0000058096944,0.00050605554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995904,0.000035564663,0.00010145043,0.00013256224,0.000035489524,0.00010455817],"domain_scores_gemma":[0.999717,0.000003117533,0.000041337964,0.00017216825,0.000049513143,0.000016842308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000049160757,0.000057975434,0.00007721366,0.0000044332646,0.000022165872,0.0000053343474,0.00007072386,0.00006837493,0.00004849281],"category_scores_gemma":[0.000008714699,0.00003642303,0.000028288028,0.0001342306,0.000022034805,0.0000011079604,0.000056254765,0.00005220633,0.0000023943212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006447419,0.000053739346,0.022844756,0.000030232477,0.00000994387,0.0000021699766,0.00002387268,0.00001795662,0.97618407,0.000029635996,0.0004920556,0.0002470819],"study_design_scores_gemma":[0.00066623924,0.00019713471,0.26986343,0.000039975203,0.0000073371566,0.000022867875,0.00006889592,0.000008044912,0.69668925,0.000010796633,0.032335795,0.00009023645],"about_ca_topic_score_codex":0.00007133406,"about_ca_topic_score_gemma":0.0032346533,"teacher_disagreement_score":0.27949482,"about_ca_system_score_codex":0.000010421007,"about_ca_system_score_gemma":0.00012061357,"threshold_uncertainty_score":0.18050125},"labels":[],"label_agreement":null},{"id":"W3164882985","doi":"10.1128/msphere.00427-21","title":"Inhibition of Three Potato Pathogens by Phenazine-Producing <i>Pseudomonas</i> spp. Is Associated with Multiple Biocontrol-Related Traits","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Moncton; Agriculture and Agri-Food Canada","funders":"New Brunswick Innovation Foundation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Phenazine; Biological pest control; Biology; Pseudomonas; Microbiology; Pseudomonas aeruginosa; Biotechnology; Botany; Bacteria; Genetics; Biochemistry","score_opus":0.01150509687571524,"score_gpt":0.1885053141047203,"score_spread":0.17700021722900505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3164882985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968021,0.0004311251,0.000009793897,0.0005994473,0.000059082497,0.00014556937,0.0010363363,0.00005278237,0.0008637466],"genre_scores_gemma":[0.9982844,0.00003069714,0.000064996384,0.00023165204,0.000028851067,0.000008510679,0.0006533319,0.0000022243369,0.00069534924],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989711,0.000087292836,0.00027322755,0.00028455487,0.00014642927,0.0002374159],"domain_scores_gemma":[0.9993239,0.00016283985,0.00017556427,0.0000697896,0.00021100201,0.000056929544],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012450959,0.00015224075,0.00024338349,0.000005347025,0.00018349777,0.00004215642,0.00009282887,0.000114716546,0.0012045165],"category_scores_gemma":[0.00011128002,0.000065704946,0.000099501805,0.000405006,0.000044882338,0.00014502695,0.00003749753,0.00018467536,0.000031579777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034662087,0.00024256538,0.006910543,0.000004361842,0.00006448931,0.000016628466,0.00009407326,0.0000064946107,0.9799185,0.0000029847097,0.0053639556,0.007340789],"study_design_scores_gemma":[0.0014498231,0.000387651,0.20222257,0.00035221782,0.00008885992,0.00009319431,0.0010251733,0.00029851313,0.78548366,0.00016135671,0.007953879,0.0004831134],"about_ca_topic_score_codex":0.00066799193,"about_ca_topic_score_gemma":0.0065604174,"teacher_disagreement_score":0.19531202,"about_ca_system_score_codex":0.000030116167,"about_ca_system_score_gemma":0.00001618898,"threshold_uncertainty_score":0.99970853},"labels":[],"label_agreement":null},{"id":"W3190598927","doi":"10.1128/msphere.00647-21","title":"Human Basigin (CD147) Does Not Directly Interact with SARS-CoV-2 Spike Glycoprotein","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Signaling Pathways in Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; UK Research and Innovation; Government of Canada; Wellcome Trust; Medical Research Council; Wellcome","keywords":"Basigin; Coronavirus disease 2019 (COVID-19); Spike (software development); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Glycoprotein; 2019-20 coronavirus outbreak; Virology; Medicine; Intensive care medicine; Spike Protein; Computer science; Biology; Disease; Outbreak; Infectious disease (medical specialty); Internal medicine","score_opus":0.015752260998321672,"score_gpt":0.27493383190941617,"score_spread":0.2591815709110945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3190598927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935678,0.00035794204,0.00025884397,0.00018954363,0.00016000649,0.00015374152,0.000057697995,0.000047465222,0.005206925],"genre_scores_gemma":[0.99405223,0.000006164247,0.0013761518,0.0009897853,0.00028535715,0.0000448197,0.00012169227,0.000052614574,0.003071213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874526,0.00008178358,0.00018632984,0.0005293337,0.00017753395,0.00027975687],"domain_scores_gemma":[0.9991069,0.000008476833,0.00007689556,0.0006270776,0.00010580499,0.000074852585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000832444,0.00022317257,0.00017863528,0.000011386605,0.00009545044,0.00006943401,0.0002353002,0.0001237263,0.00026509402],"category_scores_gemma":[0.00008806039,0.00017295215,0.00011099185,0.00009621563,0.00007971291,0.0000050663016,0.00014253441,0.00013210629,0.00004412099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011520179,0.00011071805,0.0018972753,0.000038966726,0.00007533684,0.00018480729,0.00003034449,0.000014134461,0.9928146,0.000042391104,0.0032625874,0.0014136211],"study_design_scores_gemma":[0.0005881664,0.00016330193,0.0004791153,0.00007692146,0.000028598775,0.000025469795,0.00005741318,0.000008013713,0.9612595,0.000059992613,0.036968302,0.00028524047],"about_ca_topic_score_codex":0.00007180456,"about_ca_topic_score_gemma":0.00045757758,"teacher_disagreement_score":0.03370571,"about_ca_system_score_codex":0.000021871485,"about_ca_system_score_gemma":0.00012977757,"threshold_uncertainty_score":0.7052784},"labels":[],"label_agreement":null},{"id":"W31915222","doi":"10.1128/msphere.00801-19","title":"Adapting general practice training to meet the evolving health care needs of our communities","year":2012,"lang":"en","type":"article","venue":"mSphere","topic":"Primary Care and Health Outcomes","field":"Health Professions","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Training (meteorology); Preference; Nursing; Service (business); Health care; Population ageing; Population; Medicine; Primary care; Public relations; Medical education; Psychology; Business; Family medicine; Marketing; Political science; Environmental health; Geography","score_opus":0.142357294385111,"score_gpt":0.46368116839741136,"score_spread":0.32132387401230034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W31915222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.38635933,0.028913725,0.00066944596,0.19278538,0.0048128217,0.0027189516,0.00012574375,0.00035584514,0.38325876],"genre_scores_gemma":[0.9139757,0.00006119008,0.007029467,0.07653544,0.0011250112,0.000088361674,0.000013636046,0.000039942257,0.0011312215],"study_design_codex":"qualitative","study_design_gemma":"qualitative","domain_scores_codex":[0.99641126,0.001575208,0.0006660181,0.000080570455,0.00029417072,0.00097279815],"domain_scores_gemma":[0.9972304,0.0012365673,0.00043760042,0.0005146603,0.00030739765,0.0002733432],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0021037618,0.00017150099,0.00041861783,0.000066023735,0.0016872754,0.000012136581,0.00035261063,0.00012359163,0.00023365149],"category_scores_gemma":[0.00040348395,0.00012662826,0.000077297314,0.00030922136,0.000023058194,0.00036754928,0.00027238546,0.000643207,0.000053711723],"study_design_candidate":"qualitative","study_design_consensus":"qualitative","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047570353,0.000026156038,0.034170974,0.00048262146,0.000037724858,5.0730307e-7,0.72612166,0.0000264318,0.000022326267,0.010429821,0.21936758,0.009266641],"study_design_scores_gemma":[0.00023110038,0.00007868645,0.0056948676,0.00014922113,0.000018586963,0.0000029508305,0.71004885,0.000010413265,0.000004011683,0.000018074456,0.2836424,0.000100806086],"about_ca_topic_score_codex":0.01099921,"about_ca_topic_score_gemma":0.0066202786,"teacher_disagreement_score":0.5276164,"about_ca_system_score_codex":0.0005639587,"about_ca_system_score_gemma":0.001603174,"threshold_uncertainty_score":0.9996124},"labels":[],"label_agreement":null},{"id":"W3194990160","doi":"10.1128/msphere.00650-21","title":"RNase III and RNase E Influence Posttranscriptional Regulatory Networks Involved in Virulence Factor Production, Metabolism, and Regulatory RNA Processing in Bordetella pertussis","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Simon Fraser University; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; RNase P; Transcriptome; Bordetella pertussis; Virulence; Gene; RNA; Genetics; Regulon; Gene expression; Bacteria","score_opus":0.010566732104830986,"score_gpt":0.2241794983451713,"score_spread":0.2136127662403403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3194990160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9684984,0.030464485,0.00001716379,0.00031072996,0.0004568715,0.00016707121,0.00001160255,0.000039583952,0.000034061064],"genre_scores_gemma":[0.9981042,0.0010680386,0.000081669736,0.000118499476,0.00007984237,0.000026586367,0.000026832156,0.000017572522,0.00047676958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986618,0.00017783209,0.00036508564,0.00048184322,0.0000278637,0.0002855627],"domain_scores_gemma":[0.99948496,0.000030079857,0.00009217057,0.00021446966,0.0001391542,0.000039166916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001816,0.00020471192,0.00030413957,0.000085859465,0.00019146601,0.0000511672,0.00006950722,0.00026376403,0.00023706724],"category_scores_gemma":[0.0000820578,0.00019540834,0.000034524404,0.0003210143,0.00018620721,0.00040766643,0.00006024833,0.00033961653,0.0000035171577],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016891808,0.00013142609,0.06649191,0.00006985496,0.000027787706,0.000008834071,0.00063162274,0.00018403481,0.91713196,0.00015396444,0.00015509805,0.014844593],"study_design_scores_gemma":[0.0014791256,0.00003099511,0.9450916,0.00023501817,0.00002874224,0.000105279614,0.00051935815,0.00006714719,0.04606677,0.00011774434,0.005945039,0.00031318355],"about_ca_topic_score_codex":0.00030386992,"about_ca_topic_score_gemma":0.0017462823,"teacher_disagreement_score":0.8785997,"about_ca_system_score_codex":0.000039588216,"about_ca_system_score_gemma":0.0001320219,"threshold_uncertainty_score":0.7968521},"labels":[],"label_agreement":null},{"id":"W3196275782","doi":"10.1128/msphere.00083-21","title":"Exposure to Parasitic Protists and Helminths Changes the Intestinal Community Structure of Bacterial Communities in a Cohort of Mother-Child Binomials from a Semirural Setting in Mexico","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Université de Sherbrooke; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biology; Entamoeba coli; Ascaris lumbricoides; Microbiology; Prevotella; Blastocystis; Entamoeba histolytica; Helminths; Zoology; Feces; Bacteria; Genetics","score_opus":0.010765658501353326,"score_gpt":0.24532723274339174,"score_spread":0.2345615742420384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3196275782","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99790734,0.0007336727,0.000016555017,0.00020351193,0.00015089565,0.0003424721,0.0003721812,0.000008369714,0.00026501078],"genre_scores_gemma":[0.9993719,0.00002151518,0.00021361644,0.000127272,0.000017828379,0.00002337417,0.0001965969,0.000008963465,0.000018940074],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99845207,0.00095637527,0.00029161014,0.00009477796,0.000026693777,0.00017846412],"domain_scores_gemma":[0.9984198,0.0010833829,0.00010583434,0.00030520617,0.00007239664,0.000013342858],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024662708,0.00012770953,0.00033744716,0.000045453,0.00011589372,0.000012528825,0.0001493682,0.00014287113,0.0005758221],"category_scores_gemma":[0.00040304192,0.00010394761,0.000025639083,0.00014133807,0.0002275646,0.000029753053,0.00011588801,0.0004521588,0.0000027156927],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011656442,0.00015864984,0.7790491,0.00005718815,0.00006967765,0.000006402814,0.009741131,0.000065469685,0.20919116,0.00012056495,0.00012207357,0.0013019938],"study_design_scores_gemma":[0.001088616,0.00024159235,0.8304684,0.00064776343,0.000034461762,0.00009889026,0.012484083,0.000006175995,0.15428472,0.00030332876,0.00021079463,0.00013113867],"about_ca_topic_score_codex":0.008776238,"about_ca_topic_score_gemma":0.07136713,"teacher_disagreement_score":0.0625909,"about_ca_system_score_codex":0.00002635998,"about_ca_system_score_gemma":0.000054775704,"threshold_uncertainty_score":0.99782443},"labels":[],"label_agreement":null},{"id":"W4200582827","doi":"10.1128/msphere.00956-21","title":"Population Dynamics of Escherichia coli Causing Bloodstream Infections over Extended Time Periods","year":2021,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Escherichia coli; Population; Cephalosporin; Microbiology; Bloodstream infection; Biology; Medicine; Antibiotics; Environmental health; Gene; Genetics","score_opus":0.004788479132515467,"score_gpt":0.2409276877090066,"score_spread":0.23613920857649115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200582827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99636805,0.00017681444,0.0008488412,0.00003482191,0.00013676676,0.00006762532,0.000032545806,0.000012872429,0.0023216351],"genre_scores_gemma":[0.9942763,0.00003632809,0.002404632,0.000033164746,0.00008678349,0.0000017516771,0.00043259154,0.000021181208,0.002707294],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99932915,0.000048856484,0.00018607403,0.00021850468,0.00008123073,0.00013617917],"domain_scores_gemma":[0.9994703,0.0000065698205,0.00009658443,0.0002977833,0.000092570874,0.00003618621],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000045218596,0.00010662226,0.00014420661,0.000009710568,0.00006333836,0.000024020945,0.00004881467,0.00014252409,0.00042260895],"category_scores_gemma":[0.000065576234,0.000115805946,0.00007600258,0.00011856264,0.000048197202,0.0000048624847,0.00006270669,0.00005660849,0.000006148481],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018422661,0.00014009645,0.16076311,0.000034780012,0.000068324916,0.0000070694714,0.000015543716,0.000091558824,0.8376035,0.00018089339,0.0003326857,0.0007440054],"study_design_scores_gemma":[0.00082662643,0.0002178492,0.8003355,0.000094560404,0.00011309944,0.000044962228,0.00024918374,0.0024494359,0.1903098,0.00021724039,0.004685619,0.00045613066],"about_ca_topic_score_codex":0.00010038077,"about_ca_topic_score_gemma":0.0005595406,"teacher_disagreement_score":0.64729375,"about_ca_system_score_codex":0.000030492514,"about_ca_system_score_gemma":0.00007342685,"threshold_uncertainty_score":0.47224295},"labels":[],"label_agreement":null},{"id":"W4214551380","doi":"10.1128/msphere.00998-21","title":"Adenovirus 5 Vectors Expressing SARS-CoV-2 Proteins","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Manitoba","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Pandemic; Battlefield; Virology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Coronavirus; 2019-20 coronavirus outbreak; Virus; Severe acute respiratory syndrome coronavirus; Biology; History; Medicine; Outbreak; Infectious disease (medical specialty)","score_opus":0.057709051844220476,"score_gpt":0.34539274320832464,"score_spread":0.28768369136410415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214551380","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97045,0.0012705923,0.00009726847,0.00044224004,0.00021640083,0.00070011936,0.000013826401,0.00020453015,0.026605032],"genre_scores_gemma":[0.9717267,0.0000010644557,0.0003862873,0.026641259,0.00029324964,0.00033984712,0.0000053397166,0.000067693465,0.0005385238],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978912,0.000119836914,0.0002422112,0.00041895578,0.00082122214,0.00050661433],"domain_scores_gemma":[0.999244,0.00005311357,0.00006557379,0.0005354512,0.000064888496,0.000036988433],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027564526,0.00018979966,0.00028762047,0.00009456754,0.00037056088,0.00005666927,0.0002892939,0.00007628613,0.0004320401],"category_scores_gemma":[0.00011641211,0.00017828045,0.00014077572,0.0005046819,0.00008594281,0.00009475256,0.0003174363,0.0006571951,0.00027270883],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034635628,0.0002663007,0.01583891,0.00011555684,0.000057195302,0.0004908546,0.0006748216,0.0000016131955,0.9590014,0.000076061806,0.01173947,0.011391458],"study_design_scores_gemma":[0.0009704615,0.00028891038,0.00095388934,0.000038893777,0.000021347612,0.00007296507,0.00043140285,0.00012708409,0.47688696,0.0000979409,0.5199569,0.00015328446],"about_ca_topic_score_codex":0.0005713494,"about_ca_topic_score_gemma":0.000058776273,"teacher_disagreement_score":0.5082174,"about_ca_system_score_codex":0.00029740634,"about_ca_system_score_gemma":0.00039364916,"threshold_uncertainty_score":0.72700655},"labels":[],"label_agreement":null},{"id":"W4225281773","doi":"10.1128/msphere.00115-22","title":"<i>icaR</i> and <i>icaT</i> are Ancient Chromosome Genes Encoding Substrates of the Type III Secretion Apparatus in Shigella flexneri","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Regulon; Biology; Gene; Shigella flexneri; Genetics; Shigella; Plasmid; Secretion; Escherichia coli; Biochemistry","score_opus":0.014238670409042774,"score_gpt":0.24998582930908292,"score_spread":0.23574715890004014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225281773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9859936,0.011810598,0.0000028908848,0.00016957597,0.000102386235,0.00019979589,0.000019317471,0.000005586571,0.0016962221],"genre_scores_gemma":[0.9984058,0.00084840925,0.000044934397,0.00014985527,0.00005186634,0.000054183995,0.000015241264,0.000011550098,0.00041814597],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990726,0.000115772884,0.00015140955,0.0002556593,0.00019006747,0.0002144827],"domain_scores_gemma":[0.99956185,0.000015246447,0.00008384277,0.000246952,0.000055051518,0.00003704579],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019938672,0.00010539917,0.00013704895,0.000013585241,0.00016653616,0.00001284605,0.00020523727,0.000047627884,0.00003447706],"category_scores_gemma":[0.00004142541,0.000085373234,0.000041493222,0.0002776702,0.00012540456,0.0000029287114,0.0004770013,0.00014222575,7.5574786e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006339027,0.000046854024,0.058540896,0.000035869154,0.00002073971,0.000003138346,0.0001328362,0.00031343693,0.93941355,0.00004789418,0.0011440151,0.00023736552],"study_design_scores_gemma":[0.0017032322,0.0007626827,0.13491273,0.00007609769,0.00003398032,0.000033623102,0.0060249446,0.0005615076,0.7172237,0.0001376762,0.1379542,0.0005756291],"about_ca_topic_score_codex":0.000052587693,"about_ca_topic_score_gemma":0.000285273,"teacher_disagreement_score":0.22218987,"about_ca_system_score_codex":0.000026077327,"about_ca_system_score_gemma":0.00008280615,"threshold_uncertainty_score":0.34814197},"labels":[],"label_agreement":null},{"id":"W4226016728","doi":"10.1128/msphere.00911-21","title":"Clostridioides difficile Phosphoproteomics Shows an Expansion of Phosphorylated Proteins in Stationary Growth Phase","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek; ZonMw","keywords":"Phosphorylation; Phosphoproteomics; Protein phosphorylation; Phosphorylation cascade; Biology; Serine; Kinase; Threonine; Phosphopeptide; Biochemistry; Protein kinase A; Cell biology","score_opus":0.024453590343737272,"score_gpt":0.3026018203004558,"score_spread":0.2781482299567185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226016728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954178,0.00085996964,0.00004971943,0.00032099526,0.00009643592,0.001767915,0.00034381164,0.00008772825,0.0010556654],"genre_scores_gemma":[0.9971889,0.00012853323,0.00073492056,0.00009926304,0.000073042625,0.0004003718,0.00049723283,0.00006825612,0.0008094706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970576,0.0001778842,0.0006863793,0.00055453705,0.0010027876,0.00052076695],"domain_scores_gemma":[0.99870914,0.00008024233,0.00017364981,0.0005606976,0.00024037642,0.00023588545],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000467214,0.0002748833,0.0005352135,0.00021557466,0.0002091609,0.000019007479,0.00028439134,0.00011766063,0.0042524426],"category_scores_gemma":[0.00016990038,0.00027887733,0.00014996696,0.0010755934,0.00011480037,0.00013924214,0.00022851015,0.0007623231,0.000016896878],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005869398,0.005164731,0.00609435,0.0002818528,0.000073343326,0.0004884728,0.0011445072,0.00061079406,0.95453525,0.00024235142,0.0017559293,0.02373905],"study_design_scores_gemma":[0.008355782,0.0042984495,0.0017873482,0.00009408272,0.0000489415,0.000075088086,0.0038332967,0.005348932,0.97414017,0.00016759388,0.001500811,0.00034948837],"about_ca_topic_score_codex":0.001389246,"about_ca_topic_score_gemma":0.00008238485,"teacher_disagreement_score":0.023389561,"about_ca_system_score_codex":0.0005057423,"about_ca_system_score_gemma":0.0007502958,"threshold_uncertainty_score":0.9999663},"labels":[],"label_agreement":null},{"id":"W4229369340","doi":"10.1128/msphere.00075-22","title":"High-Throughput Chemical Screen Identifies a 2,5-Disubstituted Pyridine as an Inhibitor of Candida albicans Erg11","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; National Institute of Allergy and Infectious Diseases; Japan Agency for Medical Research and Development","keywords":"Candida albicans; Throughput; Chemistry; Pharmacology; Microbiology; Medicine; Computer science; Biology; Telecommunications","score_opus":0.013320172443624809,"score_gpt":0.2734527948893917,"score_spread":0.2601326224457669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4229369340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99620414,0.0004892905,0.000041117513,0.0005297406,0.00021364786,0.0003185519,0.00013331005,0.00008505055,0.0019851273],"genre_scores_gemma":[0.9957367,0.000022445445,0.00038731517,0.0002672978,0.0002150045,0.000034295444,0.00022084216,0.000028601,0.0030874955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823475,0.000050982126,0.00039433257,0.00043313485,0.0005912724,0.00029555464],"domain_scores_gemma":[0.99896115,0.00004378816,0.000113847585,0.0005731013,0.00012358719,0.00018454573],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023025963,0.00017968193,0.0004706943,0.000027992117,0.00016133416,0.000014663578,0.00019358803,0.00008048822,0.0069068354],"category_scores_gemma":[0.0001431864,0.00016677234,0.00014460528,0.00034894154,0.0002283452,0.00013150272,0.00014918424,0.0003269115,0.00003215858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0056651067,0.0023280377,0.1417514,0.0005826208,0.00041526445,0.0005893488,0.0021538765,0.00011395341,0.79588765,0.0047396566,0.038223244,0.007549868],"study_design_scores_gemma":[0.013190451,0.0043267338,0.290063,0.00061868,0.0010043193,0.00025436212,0.018116789,0.0007722954,0.62035745,0.00441974,0.04515088,0.0017253245],"about_ca_topic_score_codex":0.0040963357,"about_ca_topic_score_gemma":0.0014407757,"teacher_disagreement_score":0.1755302,"about_ca_system_score_codex":0.00016197708,"about_ca_system_score_gemma":0.00028811707,"threshold_uncertainty_score":0.994001},"labels":[],"label_agreement":null},{"id":"W4282838644","doi":"10.1128/msphere.00156-22","title":"Reconstitution of Mycobacterium marinum Nonhomologous DNA End Joining Pathway in <i>Leishmania</i>","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Ku80; Ku70; Biology; Non-homologous end joining; DNA ligase; DNA repair; Cell biology; DNA; Molecular biology; Genetics; Gene; DNA-binding protein; Transcription factor","score_opus":0.007692290524053368,"score_gpt":0.20279786780114098,"score_spread":0.1951055772770876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282838644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98426515,0.00022766743,0.00014707529,0.000050795526,0.00042400503,0.00015005248,0.000050782633,0.000017750237,0.014666746],"genre_scores_gemma":[0.9977947,0.000013731674,0.00071511924,0.00020893608,0.00005968246,0.000053402306,0.00012085717,0.000017549688,0.0010160545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990434,0.00010283724,0.00023238105,0.00029190935,0.00012330526,0.00020613534],"domain_scores_gemma":[0.9995271,0.000007315922,0.00010532024,0.00029919372,0.000025582918,0.00003547113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025058378,0.00011358391,0.00014999144,0.00002816969,0.000063618994,0.000007222142,0.00018003998,0.000086100416,0.0004863541],"category_scores_gemma":[0.00003183149,0.0001303771,0.00007032915,0.00010557426,0.000045967554,0.0000039175866,0.00031142472,0.00013071542,0.0000074822765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080076854,0.00008713777,0.0038324422,0.000021056632,0.000016554648,0.000038627568,0.000067195775,0.0001474357,0.9886058,0.00032499197,0.00079289934,0.0059858086],"study_design_scores_gemma":[0.0006659895,0.00050184363,0.001538136,0.0000137608295,0.0000067807596,0.00012551667,0.00035397703,0.000050245155,0.9019641,0.00024878856,0.09430456,0.00022626539],"about_ca_topic_score_codex":0.0000676011,"about_ca_topic_score_gemma":0.00018157311,"teacher_disagreement_score":0.09351166,"about_ca_system_score_codex":0.00004248338,"about_ca_system_score_gemma":0.00011522264,"threshold_uncertainty_score":0.53252363},"labels":[],"label_agreement":null},{"id":"W4284882204","doi":"10.1128/msphere.00153-22","title":"Surface Motility Favors Codependent Interaction between Pseudomonas aeruginosa and Burkholderia cenocepacia","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Universidade de São Paulo; Natural Sciences and Engineering Research Council of Canada; Government of Canada; McGill University","keywords":"Burkholderia cenocepacia; Pseudomonas aeruginosa; Microbiology; Burkholderia cepacia complex; Cystic fibrosis; Biofilm; Motility; Biology; Burkholderia; Bacteria; Genetics","score_opus":0.028491621084309082,"score_gpt":0.31651081049961544,"score_spread":0.28801918941530635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4284882204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99490774,0.0006653658,0.00026188386,0.0009493987,0.00019531474,0.00046625597,0.00011774576,0.000093982366,0.0023423175],"genre_scores_gemma":[0.9964555,0.000037264625,0.0015364441,0.00006105976,0.00009154987,0.00002393453,0.00008502474,0.00002465356,0.0016845686],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982482,0.00014449113,0.00024762595,0.00040349818,0.0006190777,0.00033711133],"domain_scores_gemma":[0.9991232,0.00018395351,0.00007558058,0.00032379653,0.00006603217,0.00022739734],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033850985,0.00015830966,0.0003058397,0.000034466033,0.00025043378,0.00003947798,0.000115522256,0.000041742667,0.0028651326],"category_scores_gemma":[0.00015686022,0.00015409758,0.00006428849,0.00020908462,0.000094216295,0.00013483765,0.00028343973,0.0005033954,0.000039311206],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001083549,0.00043829464,0.84082526,0.0005129652,0.00026158665,0.00024001923,0.0014080514,0.00084107154,0.09342433,0.00012608463,0.012048687,0.048790094],"study_design_scores_gemma":[0.004327616,0.0016701486,0.7762799,0.00013722549,0.00017496149,0.00039338236,0.010554864,0.0025435642,0.020227859,0.000813968,0.18235134,0.00052517606],"about_ca_topic_score_codex":0.0004309738,"about_ca_topic_score_gemma":0.00008213068,"teacher_disagreement_score":0.17030264,"about_ca_system_score_codex":0.00028596036,"about_ca_system_score_gemma":0.00008891092,"threshold_uncertainty_score":0.9980464},"labels":[],"label_agreement":null},{"id":"W4290805805","doi":"10.1128/msphere.00317-22","title":"The HPV Induced Cancer Resource (THInCR): a Suite of Tools for Investigating HPV-Dependent Human Carcinogenesis","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Carcinogenesis; Human Protein Atlas; Biology; Epigenomics; Cancer research; Cancer; Cervical cancer; microRNA; Gene; DNA methylation; Gene expression; Genetics","score_opus":0.11304897731110762,"score_gpt":0.37241005716469006,"score_spread":0.2593610798535824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4290805805","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9712816,0.0023509231,0.0000065108247,0.0025318158,0.00009613103,0.0010401263,0.00009164759,0.00003823734,0.022563035],"genre_scores_gemma":[0.99495095,0.00002146511,0.00004737453,0.00071359245,0.00025771724,0.0007655546,0.000029824061,0.000038320988,0.0031752011],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99818146,0.00012336599,0.000322071,0.0002723714,0.0007217759,0.00037896086],"domain_scores_gemma":[0.99876916,0.00038657707,0.00010751778,0.00040448047,0.00017435447,0.00015790769],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00070918177,0.00012340724,0.0002733433,0.000032029395,0.00073345145,0.000045181478,0.00029468714,0.000052302235,0.0064559504],"category_scores_gemma":[0.00029003652,0.00009285539,0.00013806988,0.00028294828,0.00009169335,0.000041083385,0.0002900747,0.00038852167,0.0000026316652],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012011194,0.00022011962,0.048174843,0.0011024991,0.0003582605,0.000027974575,0.0040360736,0.00028246932,0.10601229,0.0024261537,0.016589519,0.8195687],"study_design_scores_gemma":[0.0096770115,0.0028043503,0.5707234,0.00008089819,0.00042743128,0.000036735277,0.017376795,0.0011354882,0.12641889,0.0022969749,0.26832384,0.0006981778],"about_ca_topic_score_codex":0.0026663055,"about_ca_topic_score_gemma":0.0017665755,"teacher_disagreement_score":0.8188705,"about_ca_system_score_codex":0.00028533264,"about_ca_system_score_gemma":0.00035384696,"threshold_uncertainty_score":0.9944523},"labels":[],"label_agreement":null},{"id":"W4307922435","doi":"10.1128/msphere.00446-22","title":"Probiotic Bifidobacteria Mitigate the Deleterious Effects of <i>para</i> -Cresol in a Drosophila melanogaster Toxicity Model","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"Complementary and Alternative Medicine Studies","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Probiotic; Gut flora; Biology; Microbiology; Bifidobacterium; Toxicity; Dysbiosis; Kidney disease; Pharmacology; Lactobacillus; Bacteria; Medicine; Internal medicine; Immunology; Endocrinology","score_opus":0.019385282436082892,"score_gpt":0.26807433767272104,"score_spread":0.24868905523663815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4307922435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99568653,0.0005354289,0.000062106665,0.0013534339,0.00013949128,0.00086683925,0.00002942842,0.000019971681,0.0013067783],"genre_scores_gemma":[0.9978002,0.000019746372,0.00017239909,0.0008373292,0.0000848886,0.00014410529,0.00001601866,0.000016437996,0.00090887386],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988549,0.00012518978,0.00028683123,0.0002239891,0.00026713533,0.00024198391],"domain_scores_gemma":[0.99945533,0.00011424115,0.000094889125,0.00026098837,0.000027988008,0.000046546793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001642755,0.00015877234,0.00035723194,0.000040144037,0.00013044353,0.000005083823,0.000162566,0.000008881276,0.0004890332],"category_scores_gemma":[0.000036537105,0.00010750577,0.000084536834,0.00018955626,0.00011815051,0.000032356886,0.00026708588,0.00024883417,0.000007115767],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037898247,0.002778637,0.16722226,0.003187616,0.0011503837,0.0014489886,0.018784158,0.0032111257,0.7674494,0.0009869486,0.009148967,0.020841738],"study_design_scores_gemma":[0.06645979,0.0343645,0.45815235,0.0044557797,0.0021799654,0.001313038,0.013536012,0.0779066,0.27618754,0.008634696,0.05398437,0.0028253526],"about_ca_topic_score_codex":0.000072959265,"about_ca_topic_score_gemma":0.000073889525,"teacher_disagreement_score":0.4912618,"about_ca_system_score_codex":0.0000687209,"about_ca_system_score_gemma":0.000042342184,"threshold_uncertainty_score":0.5354571},"labels":[],"label_agreement":null},{"id":"W4309048285","doi":"10.1128/msphere.00456-22","title":"<i>Fusarium graminearum</i>Ste3 G-Protein Coupled Receptor: A Mediator of Hyphal Chemotropism and Pathogenesis","year":2022,"lang":"en","type":"article","venue":"mSphere","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Agriculture and Agri-Food Canada; Queen's University; National Research Council Canada; University of Ottawa","funders":"National Research Council Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Microbiology; Fungal protein; Cell biology; Hypha; Peroxidase; Gene; Genetics; Mutant; Biochemistry; Enzyme","score_opus":0.006840867654215571,"score_gpt":0.16492141613679298,"score_spread":0.1580805484825774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309048285","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99657106,0.0010894432,0.0000011995805,0.00072378747,0.00014078495,0.00028363065,0.00028651237,0.000051046372,0.00085252774],"genre_scores_gemma":[0.99819857,0.000058140948,0.00026863557,0.00015472683,0.00022191755,0.00008773396,0.00019390322,0.0000017397185,0.0008146607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988303,0.00009057394,0.00022824608,0.00029189113,0.00032215024,0.00023681046],"domain_scores_gemma":[0.99959856,0.00006438156,0.0001223815,0.00007255672,0.000045135326,0.00009699386],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016357287,0.00015159446,0.00024160578,0.0000054368925,0.00023969368,0.000021734308,0.00025219217,0.00007703086,0.0017200285],"category_scores_gemma":[0.000028106142,0.000059867092,0.0000905372,0.00031400032,0.00005525018,0.000047403526,0.00021727895,0.00015123947,0.000012200849],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035410376,0.000106890344,0.0023071936,0.000013195137,0.00001583366,0.0000042829724,0.000081609,0.0000012355333,0.9788507,0.00021466769,0.00097147987,0.017397495],"study_design_scores_gemma":[0.0014677165,0.0030061193,0.079187036,0.000027902784,0.00009772031,0.00008767673,0.005672127,0.00022189769,0.4744874,0.0009109149,0.43361688,0.001216611],"about_ca_topic_score_codex":0.00018624998,"about_ca_topic_score_gemma":0.000074928226,"teacher_disagreement_score":0.5043633,"about_ca_system_score_codex":0.00002279721,"about_ca_system_score_gemma":0.000008450234,"threshold_uncertainty_score":0.99919254},"labels":[],"label_agreement":null},{"id":"W4318169184","doi":"10.1128/msphere.00034-23","title":"Virology under the Microscope—a Call for Rational Discourse","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Western University; Queen's University","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; Medical Research Council; Canadian Institutes of Health Research; Plant Sciences Institute, Iowa State University; Advanced Research Projects Agency; Defense Advanced Research Projects Agency; Natural Sciences and Engineering Research Council of Canada; Pfizer; Moderna; Centers for Disease Control and Prevention; Zoetis; Novavax; Iowa State University; GlaxoSmithKline; Directorate for Biological Sciences; National Institutes of Health; Associazione Italiana per la Ricerca sul Cancro; U.S. Department of Defense; Eli Lilly and Company; Fast Grants; United States Agency for International Development; Biomedical Advanced Research and Development Authority; Ohio State University; Deutsche Forschungsgemeinschaft; National Science Foundation; UK Research and Innovation; AstraZeneca; Bill and Melinda Gates Foundation; Coalition for Epidemic Preparedness Innovations; National Cancer Institute; Gilead Sciences; U.S. Department of Agriculture","keywords":"Immunosuppression; Humanity; Virology; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Disease; Medicine; 2019-20 coronavirus outbreak; Immunology; Infectious disease (medical specialty); Pathology; Political science","score_opus":0.04673157807881114,"score_gpt":0.39280355214854396,"score_spread":0.34607197406973284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4318169184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85665274,0.00019690137,0.0045744847,0.13640998,0.0002353616,0.0005358455,0.00006314587,0.00006753134,0.0012640149],"genre_scores_gemma":[0.974487,0.00006220689,0.000695242,0.0058728,0.0003898977,0.00015770941,0.00020238022,0.0000172129,0.018115537],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9992264,0.000067061075,0.00012815643,0.00014772202,0.00008288391,0.00034777386],"domain_scores_gemma":[0.999644,0.00006821352,0.000020378475,0.00014914255,0.000038104088,0.00008016796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002634128,0.00006484771,0.00014734744,0.00001702177,0.0000980564,0.00000834539,0.00008441247,0.00005362356,0.00036737914],"category_scores_gemma":[0.0001643677,0.00003934828,0.000075440366,0.00007682289,0.00016865093,0.000023044586,0.00004480899,0.00012760912,0.00030559496],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005722405,0.00005544264,0.015288524,0.000041878342,0.00008502355,0.000033011995,0.000056766152,0.00015941836,0.044230904,0.0025542125,0.93347555,0.0034470246],"study_design_scores_gemma":[0.005816897,0.002438995,0.55096424,0.00007140696,0.00007884,0.00024276333,0.0017156075,0.0066828174,0.00067042554,0.0074432176,0.4236616,0.00021320843],"about_ca_topic_score_codex":0.00003580663,"about_ca_topic_score_gemma":0.0002570852,"teacher_disagreement_score":0.5356757,"about_ca_system_score_codex":0.000023217563,"about_ca_system_score_gemma":0.000061783234,"threshold_uncertainty_score":0.4022544},"labels":[],"label_agreement":null},{"id":"W4319332881","doi":"10.1128/msphere.00022-23","title":"mSphere of Influence: Deterministic and Stochastic Processes Drive Microbial Evolution","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Canadian Institute for Advanced Research","keywords":"Microbial genetics; Biology; Evolutionary biology; Field (mathematics); Biochemical engineering; Genetics; Mathematics; Gene; Engineering","score_opus":0.004228039415716257,"score_gpt":0.2304478932011114,"score_spread":0.22621985378539514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319332881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99399143,0.0005290758,0.004859405,0.000032308057,0.00006981249,0.0001361438,0.00004194269,0.000025897663,0.00031399264],"genre_scores_gemma":[0.99819905,0.00006265799,0.00028953963,0.000039716386,0.00005950527,0.000012470728,0.0000712887,0.00001574326,0.0012500582],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993038,0.000022460214,0.00016901082,0.00023794197,0.00008827549,0.00017851393],"domain_scores_gemma":[0.99954766,0.000014674811,0.00007324651,0.00017206791,0.00013552296,0.000056830428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006140498,0.00011314006,0.00011361469,0.000021230402,0.00006150754,0.000011698909,0.000103737475,0.00012021576,0.00002072085],"category_scores_gemma":[0.0001848989,0.00011426766,0.000030650972,0.00019191002,0.0001452603,0.0000032186636,0.000094653704,0.000049364364,0.000023095565],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001560416,0.00009326176,0.012371845,0.0006288353,0.00009041127,0.0000074024492,0.00037314155,0.028143534,0.9492592,0.00036313676,0.005192205,0.0033209592],"study_design_scores_gemma":[0.012157874,0.0063018957,0.7593731,0.0013484873,0.0007242611,0.0005904265,0.009062982,0.084552705,0.08344507,0.011696015,0.025747273,0.0049998797],"about_ca_topic_score_codex":0.0000143783645,"about_ca_topic_score_gemma":0.00020126412,"teacher_disagreement_score":0.86581415,"about_ca_system_score_codex":0.000010003871,"about_ca_system_score_gemma":0.00014462379,"threshold_uncertainty_score":0.46597},"labels":[],"label_agreement":null},{"id":"W4322616510","doi":"10.1128/msphere.00057-23","title":"Emergence of Small Colony Variants Is an Adaptive Strategy Used by Pseudomonas aeruginosa to Mitigate the Effects of Redox Imbalance","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Pseudomonas aeruginosa; Opportunistic pathogen; Cystic fibrosis; Pathogen; Microbiology; Biology; Pseudomonas; Bacteria; Genetics","score_opus":0.012987158141292778,"score_gpt":0.2402248463750342,"score_spread":0.2272376882337414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322616510","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854213,0.00022352416,0.000042210984,0.00014490768,0.00017947429,0.00026992155,0.00012748779,0.000012413918,0.00045793905],"genre_scores_gemma":[0.99837893,0.00007495632,0.00028850973,0.00011425398,0.000070694936,0.000009639572,0.000056793353,0.000018553777,0.0009876417],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906206,0.000090158246,0.00020806142,0.0002948905,0.00009986918,0.00024493135],"domain_scores_gemma":[0.9993368,0.000025014684,0.00011627822,0.00036495234,0.000079018035,0.00007793504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012153427,0.0001426176,0.00018845603,0.000011306593,0.000053855172,0.000011136011,0.00021533728,0.00012695626,0.000066760826],"category_scores_gemma":[0.00004413509,0.00011402578,0.00006579667,0.0001990985,0.000079752506,0.000004085909,0.00009063193,0.00005894144,0.000016503507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015215095,0.00003545446,0.00035050072,0.000038974515,0.000049023798,0.0000046522996,0.00018384962,0.000026141539,0.9863858,0.000030425692,0.010679341,0.002063679],"study_design_scores_gemma":[0.00031816942,0.0012593851,0.005535416,0.000051307547,0.000020221762,0.0000025054308,0.00032509697,0.00013934425,0.99046963,0.000019462479,0.0017062961,0.0001531899],"about_ca_topic_score_codex":0.00026677188,"about_ca_topic_score_gemma":0.00019096833,"teacher_disagreement_score":0.008973045,"about_ca_system_score_codex":0.0000028440402,"about_ca_system_score_gemma":0.000049601393,"threshold_uncertainty_score":0.46498364},"labels":[],"label_agreement":null},{"id":"W4323533996","doi":"10.1128/msphere.00478-22","title":"Evidence for a Causal Role for Escherichia coli Strains Identified as Adherent-Invasive (AIEC) in Intestinal Inflammation","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; Office of Research and Economic Development, University of Nebraska-Lincoln; National Institutes of Health; Institut National de la Santé et de la Recherche Médicale; University of Nebraska-Lincoln; McMaster University; Crohn's and Colitis Foundation; University of Pennsylvania","keywords":"Escherichia coli; Inflammation; Microbiology; Biology; Immunology; Genetics; Gene","score_opus":0.05048126553881809,"score_gpt":0.3340215877831571,"score_spread":0.283540322244339,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323533996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99712485,0.00027276308,0.00089429657,0.00034862422,0.00015127369,0.0009887544,0.000047016736,0.000027969887,0.00014446],"genre_scores_gemma":[0.9949754,0.00010654581,0.0015583924,0.00014629198,0.00027768477,0.00039954222,0.0004192974,0.000028406439,0.002088449],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999005,0.00003579585,0.00024564733,0.00032078815,0.00006584843,0.00032690036],"domain_scores_gemma":[0.9994718,0.00007078143,0.000093659095,0.00017840171,0.000118339405,0.00006701022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024264163,0.00013091105,0.00013691356,0.000031141808,0.00008387246,0.00003744334,0.0001473606,0.00014194754,0.0000385986],"category_scores_gemma":[0.00059660216,0.00013825102,0.00007726526,0.00014444998,0.000030831754,0.000009121486,0.0000574335,0.00007216485,0.000047465313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018658071,0.000020992664,0.0021832252,0.00020311718,0.000016436898,0.000002276287,0.00020076828,0.00006103389,0.9895832,0.00015382121,0.004891721,0.0024968067],"study_design_scores_gemma":[0.0039273957,0.0020039747,0.097202234,0.0007261119,0.00006278115,0.000014119488,0.0030273444,0.0012900099,0.86771864,0.0024780955,0.020843446,0.0007058541],"about_ca_topic_score_codex":0.00013250616,"about_ca_topic_score_gemma":0.004406952,"teacher_disagreement_score":0.12186459,"about_ca_system_score_codex":0.0000356914,"about_ca_system_score_gemma":0.00033116274,"threshold_uncertainty_score":0.5637713},"labels":[],"label_agreement":null},{"id":"W4364352746","doi":"10.1128/msphere.00095-23","title":"Construction of Candida albicans Strains with ATP-Analog-Sensitive Protein Kinase A and Hog1","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Government of Canada; Canadian Institute for Advanced Research","keywords":"Candida albicans; Virulence; Microbiology; Yeast; Osmotic shock; Biology; Pathogen; Corpus albicans; Fungus; Fungal pathogen; Genetics; Gene; Botany","score_opus":0.01274080281792251,"score_gpt":0.2500727653035436,"score_spread":0.2373319624856211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4364352746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935043,0.000041965803,0.000105506755,0.0004511357,0.000013588626,0.00036358708,0.000041690895,0.00004556055,0.0054326896],"genre_scores_gemma":[0.99780273,0.000026799233,0.00068563345,0.000043302636,0.000026680269,0.000009156668,0.000015091555,0.000010439303,0.0013801836],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99932855,0.000019189378,0.00013025751,0.00020033952,0.00016977849,0.00015185964],"domain_scores_gemma":[0.99957776,0.000021776965,0.000052883606,0.00016369035,0.00009972656,0.00008416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000095886404,0.000090254885,0.00022579878,0.000026530137,0.000047213118,0.0000057351263,0.000019531994,0.00005386377,0.0001282202],"category_scores_gemma":[0.000057568235,0.00006711977,0.000034955774,0.00024222987,0.00029459837,0.000036405378,0.000012876889,0.000104146995,0.000008646836],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024231644,0.0002096674,0.619323,0.0012665316,0.00045383952,0.0010051768,0.0035015969,0.000009462584,0.28514442,0.0027668304,0.0010126962,0.08288363],"study_design_scores_gemma":[0.001915641,0.0009455566,0.9617038,0.00052347995,0.00015053558,0.00006439603,0.01203182,0.00015031073,0.021114059,0.00018904044,0.0010213485,0.00019005832],"about_ca_topic_score_codex":0.00044099073,"about_ca_topic_score_gemma":0.0021785046,"teacher_disagreement_score":0.34238076,"about_ca_system_score_codex":0.000027933798,"about_ca_system_score_gemma":0.00013061681,"threshold_uncertainty_score":0.2737065},"labels":[],"label_agreement":null},{"id":"W4381470440","doi":"10.1128/msphere.00071-23","title":"Genetic structure and triazole resistance among <i>Aspergillus fumigatus</i> populations from remote and undeveloped regions in Eastern Himalaya","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Recruitment Program of Global Experts; National Natural Science Foundation of China; McMaster University","keywords":"Aspergillus fumigatus; Population; Biology; Genetic diversity; Genotype; Aspergillosis; Ecology; Genetics; Gene; Microbiology; Botany; Medicine","score_opus":0.01583436250990382,"score_gpt":0.23045729095158135,"score_spread":0.21462292844167752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381470440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958848,0.0024998898,0.00010317617,0.000107522945,0.00006183026,0.00012966656,0.00088529836,0.000020505186,0.00030731782],"genre_scores_gemma":[0.9962937,0.00053675397,0.0011118933,0.00008542901,0.00007420064,0.0000038014985,0.0005131038,0.00001828354,0.0013628391],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99920845,0.000046344194,0.00015311074,0.0003353414,0.00007292615,0.00018380636],"domain_scores_gemma":[0.9996326,0.000012733805,0.000042759806,0.00019764461,0.000020682348,0.00009355574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002731089,0.00013023654,0.00012855313,0.000026370708,0.00008001611,0.0000307723,0.000072606425,0.00012172193,0.000013629417],"category_scores_gemma":[0.00004210856,0.00012623619,0.000025978714,0.00014740009,0.000057915706,0.0000051478933,0.0000856671,0.00006640947,0.000003173109],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014475548,0.000015464339,0.6498115,0.00003699061,0.00003778799,0.00009209553,0.000107594235,0.00014533185,0.34362617,0.00008775507,0.0030353856,0.0028591703],"study_design_scores_gemma":[0.0005349604,0.000016045697,0.99337053,0.00005022516,0.000019909608,0.0000043527853,0.0000942061,0.00053486385,0.00065050775,0.00095970166,0.0035811323,0.00018353581],"about_ca_topic_score_codex":0.00015595363,"about_ca_topic_score_gemma":0.0070602875,"teacher_disagreement_score":0.34355906,"about_ca_system_score_codex":0.000006797548,"about_ca_system_score_gemma":0.000028318242,"threshold_uncertainty_score":0.51477623},"labels":[],"label_agreement":null},{"id":"W4385797857","doi":"10.1128/msphere.00314-23","title":"Use of a human small airway epithelial cell line to study the interactions of <i>Aspergillus fumigatus</i> with pulmonary epithelial cells","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Aspergillus fumigatus; A549 cell; Cell biology; Endocytosis; Biology; Cell culture; Microbiology; Cell; Immunology; Biochemistry","score_opus":0.047129502927577734,"score_gpt":0.29149014488269104,"score_spread":0.2443606419551133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385797857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965255,0.000040059247,0.00008294167,0.00031963445,0.00013678998,0.0010010811,0.00014229544,0.00006018473,0.0016914838],"genre_scores_gemma":[0.9882174,0.00002385106,0.0002853246,0.00014384459,0.00013200169,0.00003265317,0.000016965909,0.000037095277,0.011110827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984411,0.000116543095,0.00046100165,0.00034593948,0.00035941965,0.000276013],"domain_scores_gemma":[0.99854314,0.0002094535,0.00014516637,0.0007304727,0.00024268751,0.00012907041],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029159107,0.00020042306,0.0004403527,0.000060916856,0.00013380511,0.000012951735,0.00018997196,0.00005978704,0.0004382764],"category_scores_gemma":[0.000059611626,0.00012352245,0.00015201463,0.00060432864,0.00014663866,0.000065840606,0.00011305741,0.00028750434,0.00009170616],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00192154,0.001974964,0.043532684,0.0001848261,0.0001610301,0.00014792776,0.0028621065,0.00025757455,0.9425846,0.000017815011,0.0009497133,0.0054052593],"study_design_scores_gemma":[0.0022712022,0.0055331495,0.2722676,0.00029272246,0.00052377465,0.000012918895,0.013339775,0.00020651188,0.69831204,0.000047722497,0.0068237153,0.00036884425],"about_ca_topic_score_codex":0.00072336756,"about_ca_topic_score_gemma":0.002692206,"teacher_disagreement_score":0.24427252,"about_ca_system_score_codex":0.00003553862,"about_ca_system_score_gemma":0.00009305378,"threshold_uncertainty_score":0.5037099},"labels":[],"label_agreement":null},{"id":"W4387114306","doi":"10.1128/msphere.00162-23","title":"Vaborbactam increases meropenem susceptibility in <i>Pseudomonas aeruginosa</i> clinical isolates displaying MexXY and AmpC upregulation","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Center, University of Rochester; National Institutes of Health; Idorsia Pharmaceuticals; Wockhardt; TenNor Therapeutics; Astellas Foundation for Research on Metabolic Disorders; Basilea Pharmaceutica; Astellas Pharma; North Bristol NHS Trust; Shionogi; Meiji Seika Pharma; University of Queensland; Pfizer; Melinta Therapeutics; Entasis Therapeutics; Albany College of Pharmacy and Health Sciences; Achaogen; Amplyx; Roivant Sciences; National University of Singapore; Nabriva Therapeutics; GenePOC; University of Texas Southwestern Medical Center; Medicines Company; University of North Texas; Novartis; Harvard University; F. Hoffmann-La Roche; Wayne State University; Medpace; GlaxoSmithKline; Allergan; Cidara Therapeutics; University of Southern California; Tufts Medical Center; Bayer; Beth Israel Deaconess Medical Center","keywords":"Pseudomonas aeruginosa; Meropenem; Microbiology; Biology; Pseudomonadaceae; Gene; Antibiotics; Bacteria; Antibiotic resistance; Genetics","score_opus":0.017129187911127795,"score_gpt":0.29856851977226745,"score_spread":0.2814393318611397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387114306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984448,0.00040052432,0.000078610545,0.000104827144,0.00013538402,0.00021640405,0.00001978133,0.000038359663,0.0005613377],"genre_scores_gemma":[0.9979403,0.00062711205,0.00057390484,0.00008999648,0.00015698206,0.000006777912,0.0001644977,0.000026392292,0.00041404905],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99848753,0.00018038022,0.00041184117,0.0005343931,0.0000987113,0.00028711464],"domain_scores_gemma":[0.9992694,0.000088003806,0.00010258916,0.00040358337,0.00004571492,0.00009065684],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005067343,0.00017673303,0.0002402639,0.000022179702,0.00007759294,0.000049262802,0.0001593079,0.00021500002,0.000053204032],"category_scores_gemma":[0.00027872866,0.00016635045,0.0000724837,0.0001868726,0.00017082032,0.000013832831,0.00019685915,0.00011552339,0.000028866376],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014300774,0.000059483,0.85236686,0.000034817112,0.000021561636,0.00000651615,0.000021715323,0.00002509417,0.14306419,0.000037402056,0.0014139699,0.0028053697],"study_design_scores_gemma":[0.0006316457,0.00011108032,0.9868621,0.000055665918,0.000014741383,0.00000510573,0.00019975749,0.00026781973,0.008367036,0.0001457685,0.003109348,0.0002299278],"about_ca_topic_score_codex":0.00016996174,"about_ca_topic_score_gemma":0.0012058307,"teacher_disagreement_score":0.13469714,"about_ca_system_score_codex":0.000015385687,"about_ca_system_score_gemma":0.000051089453,"threshold_uncertainty_score":0.6783575},"labels":[],"label_agreement":null},{"id":"W4387157819","doi":"10.1128/msphere.00048-23","title":"Stable microbial community in compacted bentonite after 5 years of exposure to natural granitic groundwater","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"CO2 Sequestration and Geologic Interactions","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nuclear Waste Management Organization; McMaster University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Ontario Research Foundation","keywords":"Bentonite; Heterotroph; Microbial population biology; Groundwater; Environmental science; Environmental chemistry; Chemistry; Biology; Bacteria; Geology; Geotechnical engineering","score_opus":0.013868918967321434,"score_gpt":0.24322023676448346,"score_spread":0.22935131779716203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387157819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973823,0.0000041040907,0.0000071438385,0.00018014753,0.00013762411,0.0001135988,0.000012189751,0.000031658517,0.0021312218],"genre_scores_gemma":[0.9964807,0.0000011880248,0.00011537752,0.0002536065,0.0000074476634,0.000011370829,0.00003205451,0.0000047833973,0.0030934599],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994357,0.00009745012,0.00013283012,0.00008335631,0.00009078418,0.00015985745],"domain_scores_gemma":[0.9997487,0.000039248123,0.000020825852,0.00014864546,0.000007992508,0.000034587258],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00011251345,0.00005881264,0.000081657614,0.000028952121,0.000048262908,0.000018808496,0.00011330406,0.000032495984,0.0053608613],"category_scores_gemma":[0.000017948063,0.00005777733,0.000027675524,0.00031713414,0.00005235016,0.00011244521,0.00010090548,0.00019196104,0.00094973075],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046953643,0.000926021,0.60165423,0.000057732108,0.000036139525,0.00015068077,0.025730545,0.014718945,0.3174565,0.00011296753,0.028033275,0.01065338],"study_design_scores_gemma":[0.00021068855,0.00008196007,0.9906249,0.000018333878,0.0000028602904,0.0000036425351,0.0007304868,0.000108919994,0.0009302834,0.00013680589,0.00706615,0.00008496804],"about_ca_topic_score_codex":0.004349602,"about_ca_topic_score_gemma":0.023746978,"teacher_disagreement_score":0.38897064,"about_ca_system_score_codex":0.00006809995,"about_ca_system_score_gemma":0.0000046994332,"threshold_uncertainty_score":0.99982816},"labels":[],"label_agreement":null},{"id":"W4387392535","doi":"10.1128/msphere.00267-23","title":"Geographical survey of the mycobiome and microbiome of Southern California glassy-winged sharpshooters","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of California, Riverside; Canadian Institute for Advanced Research; California Department of Food and Agriculture; U.S. Department of Agriculture; National Institute of Food and Agriculture; National Science Foundation","keywords":"Xylella fastidiosa; Biology; Microbiome; Leafhopper; Metagenomics; Pathogen; Ecology; Zoology; Microbiology; Bacteria; Genetics; Hemiptera; Gene","score_opus":0.01816423516218744,"score_gpt":0.2012029364839337,"score_spread":0.18303870132174627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387392535","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772197,0.000069416536,3.5047353e-8,0.0003173722,0.000099528545,0.00009463206,0.0016310618,0.000021243806,0.000044753568],"genre_scores_gemma":[0.9997829,0.000017876157,0.0000048863953,0.00004804876,0.00002935359,0.0000024793583,0.000059448434,8.613926e-7,0.000054152457],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992253,0.000117270785,0.00021807311,0.00015669088,0.00011533823,0.0001672793],"domain_scores_gemma":[0.9996106,0.00012659951,0.000108336986,0.00005694326,0.00006341944,0.000034092027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029977807,0.00009076082,0.00017327626,0.000008550197,0.000101840466,0.000023207951,0.00022381751,0.00008628577,0.0003497573],"category_scores_gemma":[0.00004552584,0.000027708462,0.00008243923,0.0007037644,0.00020125396,0.000022842425,0.000109648274,0.000055958313,0.00003032609],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014136679,0.000017165708,0.26244116,0.000010203955,0.000010954551,2.3748923e-7,0.000049102397,2.5494427e-7,0.7353123,0.0000038428243,0.0001878172,0.0019528312],"study_design_scores_gemma":[0.000077502526,0.00006293596,0.98157394,0.000046545356,0.0000072059306,0.0000010695234,0.0001944579,0.000007459748,0.016854733,0.00006431765,0.0010278241,0.00008201596],"about_ca_topic_score_codex":0.0044929646,"about_ca_topic_score_gemma":0.003583217,"teacher_disagreement_score":0.7191328,"about_ca_system_score_codex":0.0000032944604,"about_ca_system_score_gemma":0.0000052102023,"threshold_uncertainty_score":0.6792049},"labels":[],"label_agreement":null},{"id":"W4387765391","doi":"10.1128/msphere.00317-23","title":"Insight into antimicrobial resistance at a new beef cattle feedlot in western Canada","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Saskatchewan","funders":"Saskatchewan Cattlemen's Association; Beef Cattle Research Council; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Ministry of Agriculture - Saskatchewan","keywords":"Feedlot; Beef cattle; Animal health; Biotechnology; Business; Biology; Environmental planning; Veterinary medicine; Environmental resource management; Environmental science; Ecology; Animal science; Medicine","score_opus":0.01415091350969964,"score_gpt":0.2541360404494117,"score_spread":0.23998512693971205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387765391","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99160403,0.0017303752,0.0000072354765,0.001589454,0.00056264276,0.0002043501,0.00006280106,0.00008620927,0.004152925],"genre_scores_gemma":[0.86605716,0.000113420305,0.0000134577695,0.00028419486,0.000049722385,0.000013885462,0.00019467885,0.000022593367,0.1332509],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99881554,0.000116273746,0.0002250153,0.00031918896,0.000043088177,0.0004809098],"domain_scores_gemma":[0.9995068,0.00007072892,0.00003974975,0.00027859022,0.000039979936,0.000064150394],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000103937375,0.00014838681,0.00021329556,0.00008855468,0.00023056591,0.000023395545,0.00019191734,0.00014947569,0.0020753113],"category_scores_gemma":[0.000043723794,0.00014590395,0.00005199562,0.00056138384,0.00008454021,0.00006101078,0.00019976833,0.00023211303,0.0021276216],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015669606,0.000057728754,0.024703017,0.000068273024,0.000048663318,0.000051402654,0.00047812212,0.000065911074,0.26419112,0.00006724565,0.7092291,0.00088270183],"study_design_scores_gemma":[0.0015718065,0.000028331156,0.06319885,0.00010141324,0.00001174564,0.000022208442,0.000106140775,9.1054926e-7,0.050013103,0.000052732186,0.8845968,0.00029590895],"about_ca_topic_score_codex":0.5852873,"about_ca_topic_score_gemma":0.98318624,"teacher_disagreement_score":0.39789894,"about_ca_system_score_codex":0.00035508134,"about_ca_system_score_gemma":0.0008667091,"threshold_uncertainty_score":0.99883693},"labels":[],"label_agreement":null},{"id":"W4387931331","doi":"10.1128/msphere.00450-23","title":"HPV38 impairs UV-induced transcriptional activation of the IL-18 pro-inflammatory cytokine","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Università degli Studi del Piemonte Orientale; Institut de Recherche Clinique De Montréal; Ligue Contre le Cancer; Leibniz-Gemeinschaft; World Health Organization","keywords":"DNMT1; Methyltransferase; DNA methyltransferase; Cytokine; Chemistry; Cell biology; Gene; Molecular biology; Biology; Cancer research; Immunology; Methylation; Biochemistry","score_opus":0.015032122912709221,"score_gpt":0.2376010260767288,"score_spread":0.2225689031640196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387931331","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99597836,0.000052839438,0.000041650415,0.00030940666,0.00017033715,0.00021489973,0.000020699968,0.000022862941,0.003188943],"genre_scores_gemma":[0.9977224,0.000030718937,0.000021347552,0.000095691925,0.000102111204,0.000032176507,0.00012044566,0.000019352172,0.0018557734],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928874,0.00004160421,0.00018108047,0.00016809814,0.0001454639,0.00017499547],"domain_scores_gemma":[0.9995487,0.000005579817,0.000074264324,0.0002797787,0.00007070377,0.000021027949],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011474548,0.000108945474,0.00008941108,0.000019273582,0.00008548937,0.000008215077,0.00018255666,0.000121060824,0.00012552834],"category_scores_gemma":[0.000038264083,0.00008510813,0.00013206966,0.00017405982,0.000049348768,0.0000064499836,0.000049341204,0.00008266723,0.000026800926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005883387,0.000022930602,0.00417115,0.000029842533,0.00004135001,4.0679396e-7,0.00010739349,0.00010137894,0.9893637,0.000119226264,0.0038973629,0.0020864608],"study_design_scores_gemma":[0.0005540161,0.000083601335,0.096159525,0.000021015781,0.000010926692,0.0000016919381,0.00040475666,0.000067836925,0.8656388,0.00010970004,0.036819257,0.0001288865],"about_ca_topic_score_codex":0.000011647366,"about_ca_topic_score_gemma":0.000021740165,"teacher_disagreement_score":0.123724885,"about_ca_system_score_codex":0.000010164516,"about_ca_system_score_gemma":0.000094614144,"threshold_uncertainty_score":0.3470609},"labels":[],"label_agreement":null},{"id":"W4388140898","doi":"10.1128/msphere.00544-23","title":"Single-cell quantitative bioimaging of <i>P. berghei</i> liver stage translation","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Malaria Research and Control","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; University of Cape Town; Medicines for Malaria Venture; York University","keywords":"Plasmodium berghei; Proteome; Translation (biology); Plasmodium (life cycle); Plasmodium falciparum; Biology; Cell biology; Parasite hosting; Computational biology; Obligate; Malaria; Protein biosynthesis; Biochemistry; Immunology; Computer science; Messenger RNA; Gene","score_opus":0.06251151107581539,"score_gpt":0.3052651741528058,"score_spread":0.24275366307699042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388140898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8245575,0.0047373376,0.0069903815,0.007286304,0.0001745746,0.0012889905,0.00011274715,0.0003379259,0.15451424],"genre_scores_gemma":[0.9895528,0.00007552965,0.0019036296,0.00009914161,0.000036266945,0.000011154714,0.000034076023,0.000017142143,0.008270258],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919,0.000044819804,0.00015250748,0.00014306935,0.00025905398,0.0002105576],"domain_scores_gemma":[0.99950904,0.00012636212,0.000042803098,0.00014874559,0.00009182516,0.000081222526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017430102,0.000075637305,0.00017148061,0.00005726384,0.00003193144,0.00001041817,0.00005380435,0.00004079387,0.0008703476],"category_scores_gemma":[0.000044723136,0.00006563455,0.00007371325,0.00033099466,0.000048436796,0.000070397284,0.000014088793,0.000114915696,0.00019174395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010687996,0.0004170104,0.0072548003,0.00094225863,0.00014302316,0.00028940238,0.0021412866,0.000081220736,0.9005533,0.0030694017,0.008226267,0.07581322],"study_design_scores_gemma":[0.03301179,0.0063526165,0.08541799,0.0011300759,0.0006083014,0.000027975704,0.01431714,0.15659124,0.4977572,0.0013915516,0.20213206,0.0012620632],"about_ca_topic_score_codex":0.0001347269,"about_ca_topic_score_gemma":0.000053683707,"teacher_disagreement_score":0.4027961,"about_ca_system_score_codex":0.000017324215,"about_ca_system_score_gemma":0.000062052255,"threshold_uncertainty_score":0.95296955},"labels":[],"label_agreement":null},{"id":"W4388412026","doi":"10.1128/msphere.00213-23","title":"The presence of <i>Ixodes pavlovskyi</i> and <i>I. pavlovskyi</i> –borne microorganisms in Rishiri Island: an ecological survey","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Japan Agency for Medical Research and Development","keywords":"Sandpiper; Ecology; Biogeography; Tick; Geography; Zoology; Biology","score_opus":0.01471066453892836,"score_gpt":0.24772774058178026,"score_spread":0.2330170760428519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388412026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950658,0.002883077,0.000009099791,0.0001878446,0.0003806823,0.00031800507,0.00022756198,0.00014926025,0.0007786345],"genre_scores_gemma":[0.997724,0.00078400224,0.000011692497,0.00014464227,0.000024533112,0.000035788602,0.00013447847,0.000027007698,0.0011138734],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975842,0.0009564322,0.00040406483,0.00044463758,0.000059718444,0.0005509047],"domain_scores_gemma":[0.9977102,0.0015546152,0.00014051174,0.0004536075,0.00009166038,0.000049368824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009356635,0.0002304144,0.00036573038,0.000051305582,0.00024673023,0.000045813875,0.00040586002,0.00028700213,0.00034990048],"category_scores_gemma":[0.0006412216,0.00016410375,0.00006338033,0.00048589346,0.0005913272,0.00012712163,0.00023487098,0.00032170294,0.0002713435],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002851387,0.0005520915,0.8510955,0.000039071845,0.00013912705,0.000035314,0.00051007926,0.000054507527,0.11080496,0.00054102746,0.032368105,0.0035750708],"study_design_scores_gemma":[0.0010314937,0.0003582194,0.9734014,0.000023009381,0.000023132603,0.00003024339,0.0005513467,0.000015190474,0.015918769,0.0005582885,0.007859853,0.00022904908],"about_ca_topic_score_codex":0.0013350182,"about_ca_topic_score_gemma":0.022522205,"teacher_disagreement_score":0.12230589,"about_ca_system_score_codex":0.000028890247,"about_ca_system_score_gemma":0.00008901961,"threshold_uncertainty_score":0.99531424},"labels":[],"label_agreement":null},{"id":"W4388539771","doi":"10.1128/msphere.00545-23","title":"Differential intra-host infection kinetics in <i>Aedes aegypti</i> underlie superior transmissibility of African relative to Asian Zika virus","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"MSDAVENIR; National Institutes of Health; Office of National Higher Education Science Research and Innovation Policy Council; Agence Nationale de la Recherche; National Institute of Allergy and Infectious Diseases; European Commission; National Science and Technology Development Agency; Merck","keywords":"Transmissibility (structural dynamics); Zika virus; Aedes aegypti; Biology; Lineage (genetic); Virology; Host (biology); Virus; Aedes; Dengue fever; Genetics; Ecology; Gene","score_opus":0.014944722545349858,"score_gpt":0.27229322346852164,"score_spread":0.2573485009231718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388539771","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927106,0.0001058167,0.0009988595,0.0015170678,0.00014637718,0.0006847453,0.00006860819,0.00009537528,0.0036725304],"genre_scores_gemma":[0.9990793,0.000043364802,0.00008710171,0.0001401052,0.0001036065,0.00005539244,0.00003649798,0.000029210249,0.0004254542],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99862015,0.00008037455,0.0003920837,0.0003432797,0.00025869944,0.00030540788],"domain_scores_gemma":[0.9992683,0.000060601862,0.000056373767,0.00031842417,0.000072522824,0.00022378149],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000075779964,0.00018311972,0.00042733265,0.000089757006,0.00003891903,0.000017753775,0.000079326666,0.00011664005,0.0010454743],"category_scores_gemma":[0.000110696026,0.00016223075,0.00016674952,0.0006388677,0.000069507754,0.00006323404,0.000030989566,0.0001914723,0.000049308986],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004562774,0.0026649472,0.20803615,0.001101564,0.0004156841,0.00018384415,0.007542706,0.00022012446,0.55835456,0.0015028389,0.0018965816,0.2135182],"study_design_scores_gemma":[0.002381247,0.0009680788,0.9836341,0.00018748487,0.0001922631,0.0000028070585,0.0009551301,0.0006222876,0.0076745353,0.0004037367,0.0027717622,0.0002065278],"about_ca_topic_score_codex":0.00069919974,"about_ca_topic_score_gemma":0.0024186815,"teacher_disagreement_score":0.775598,"about_ca_system_score_codex":0.00010152839,"about_ca_system_score_gemma":0.00008374211,"threshold_uncertainty_score":0.9998677},"labels":[],"label_agreement":null},{"id":"W4389558793","doi":"10.1128/msphere.00379-23","title":"Microbiota-mediated effects of Parkinson’s disease medications on Parkinsonian non-motor symptoms in male transgenic mice","year":2023,"lang":"en","type":"article","venue":"mSphere","topic":"Parkinson's Disease Mechanisms and Treatments","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Gut flora; Parkinson's disease; Medicine; Constipation; Carbidopa; Internal medicine; Dopaminergic; Disease; Gastroenterology; Dopamine; Levodopa; Immunology","score_opus":0.0069046602202607376,"score_gpt":0.24245223373071467,"score_spread":0.23554757351045394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389558793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957616,0.0009571062,0.000021549113,0.0007136734,0.0003231852,0.0011662281,0.00027888094,0.00013331103,0.00064451917],"genre_scores_gemma":[0.99643075,0.0006129781,0.00013316383,0.0003580838,0.00008736617,0.00034838298,0.00035269844,0.000058417594,0.0016181631],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99821585,0.00007888978,0.00036170674,0.00051740604,0.0003609581,0.00046519146],"domain_scores_gemma":[0.99863905,0.00020074393,0.000108800785,0.0005002888,0.000048544287,0.000502572],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011908091,0.00029067672,0.00045226858,0.00022964545,0.00006819476,0.000010774591,0.00016916712,0.00013827655,0.00049416564],"category_scores_gemma":[0.000088464665,0.00025627692,0.00022174556,0.0007038051,0.00007326981,0.00005401402,0.00002933509,0.00017948048,0.0009595778],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035947466,0.008074362,0.705903,0.004041149,0.0018462039,0.0037269094,0.0016668064,0.00006204786,0.22223394,0.00019144466,0.023972804,0.02468657],"study_design_scores_gemma":[0.0058094263,0.00043986735,0.9575061,0.00094135775,0.00042032974,0.000007030106,0.00006743858,0.00047474448,0.0060818726,0.00004560381,0.027960854,0.00024535024],"about_ca_topic_score_codex":0.00009242201,"about_ca_topic_score_gemma":0.00007521638,"teacher_disagreement_score":0.2516031,"about_ca_system_score_codex":0.00014130327,"about_ca_system_score_gemma":0.00024162089,"threshold_uncertainty_score":0.999989},"labels":[],"label_agreement":null},{"id":"W4390547897","doi":"10.1128/msphere.00337-23","title":"Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Natural Environment Research Council; Sight Research UK; Canadian Institute for Advanced Research","keywords":"Biology; Environmental DNA; Ecology; Biodiversity","score_opus":0.020151909982867457,"score_gpt":0.23261451586978676,"score_spread":0.21246260588691931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390547897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9738306,0.00026569187,0.000005697295,0.0003060992,0.00013093623,0.00017569038,0.000024644181,0.00001385501,0.025246833],"genre_scores_gemma":[0.9987524,0.000010192862,0.00020114116,0.00040377103,0.000025769337,0.000006177719,0.000042063526,0.0000065059444,0.00055197283],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991312,0.00025369096,0.00018832517,0.00017536439,0.00006488219,0.00018651469],"domain_scores_gemma":[0.9995071,0.00017504413,0.000041613355,0.0002501223,0.0000026529133,0.00002345565],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017741132,0.00011590721,0.0001779145,0.000009719935,0.000079824946,0.000014853459,0.0004022499,0.0000871384,0.011507589],"category_scores_gemma":[0.0000022901313,0.000086371096,0.000058705005,0.00021580138,0.00025401634,0.0000790883,0.0001726674,0.00030758377,0.00041180247],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016159585,0.0010191292,0.045499776,0.00010210842,0.000081818565,0.000032489927,0.03882454,0.002740908,0.7741152,0.00021883323,0.13322875,0.003974838],"study_design_scores_gemma":[0.0026999835,0.0028188354,0.29970303,0.00016851044,0.00018954516,0.00008795163,0.023562986,0.0039124256,0.12867336,0.004988192,0.53182214,0.0013730514],"about_ca_topic_score_codex":0.0013138049,"about_ca_topic_score_gemma":0.006872827,"teacher_disagreement_score":0.64544183,"about_ca_system_score_codex":0.000097187294,"about_ca_system_score_gemma":0.000016038608,"threshold_uncertainty_score":0.98939604},"labels":[],"label_agreement":null},{"id":"W4391168979","doi":"10.1128/msphere.00761-23","title":"Functional genetic characterization of stress tolerance and biofilm formation in <i>Nakaseomyces</i> ( <i>Candida</i> ) <i>glabrata</i> via a novel CRISPR activation system","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Biology; CRISPR; Candida glabrata; Gene; Genetics; Phenotype; Computational biology; Gene duplication; Pathogen; RNA interference; Antifungal drug; RNA; Candida albicans","score_opus":0.010360086840215815,"score_gpt":0.2262425734585906,"score_spread":0.2158824866183748,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391168979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.928848,0.00052410393,0.06937475,0.00018739962,0.00015216811,0.0003783662,0.00010494338,0.000057425434,0.00037284073],"genre_scores_gemma":[0.9989504,0.0000834444,0.0002859482,0.0001291336,0.00011544776,0.00002960517,0.0001851987,0.000016129363,0.00020468976],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99894094,0.000026432544,0.00037561858,0.00026364147,0.0002463906,0.00014696263],"domain_scores_gemma":[0.9995626,0.000037188238,0.000086071836,0.00016667321,0.000093943454,0.00005350294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000112862675,0.00013142815,0.00022929157,0.000067047295,0.00004242425,0.000033742566,0.000034739904,0.00010071224,0.00004447946],"category_scores_gemma":[0.000015241344,0.00011714671,0.00004467353,0.00033851818,0.00004462294,0.0003716626,0.000016601949,0.0001337143,0.000009441199],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032153615,0.00010108188,0.03785745,0.0031054614,0.000018200799,0.000012425855,0.00024353898,0.00004147878,0.94990915,0.00017171312,0.00017272981,0.008045261],"study_design_scores_gemma":[0.001472865,0.00017034459,0.6615331,0.0032866115,0.00006483057,0.00007311306,0.0005524174,0.028405363,0.30319038,0.000022722243,0.0010053639,0.00022288365],"about_ca_topic_score_codex":0.00009488877,"about_ca_topic_score_gemma":0.00010770067,"teacher_disagreement_score":0.64671874,"about_ca_system_score_codex":0.00010647453,"about_ca_system_score_gemma":0.00006643615,"threshold_uncertainty_score":0.4777104},"labels":[],"label_agreement":null},{"id":"W4391822583","doi":"10.1128/msphere.00789-23","title":"Dynamics and quantitative contribution of the aminoglycoside 6′- <i>N</i> -acetyltransferase type Ib to amikacin resistance","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institute on Minority Health and Health Disparities; Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; Canada Foundation for Innovation; Canada Research Chairs","keywords":"Amikacin; Aminoglycoside; Acetyltransferase; N-acetyltransferase; Dynamics (music); Chemistry; Type (biology); Biology; Biochemistry; Physics; Antibiotics; Ecology","score_opus":0.008669934321738999,"score_gpt":0.2797587459300909,"score_spread":0.2710888116083519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391822583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98606324,0.007938142,0.002583499,0.0016007518,0.00011352851,0.00026000035,0.00007975773,0.000010952513,0.0013501059],"genre_scores_gemma":[0.9963609,0.00047255808,0.00060906506,0.0001218088,0.000026794954,0.000016979375,0.000014961379,0.000011217136,0.0023657086],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993821,0.00006450371,0.00010428186,0.00019778807,0.0001086374,0.00014268876],"domain_scores_gemma":[0.99961054,0.000037684353,0.000014161187,0.00017368293,0.00012558675,0.000038326565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013171912,0.000085041094,0.000096769036,0.000009148284,0.00006186215,0.000020495583,0.00009938655,0.00005080077,0.000005827953],"category_scores_gemma":[0.00024712813,0.00006196777,0.000037314745,0.00020496982,0.000109126246,0.0000029029277,0.00009034406,0.000080100916,0.000003596669],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026669112,0.000023074226,0.0030456088,0.00013286117,0.00011227895,0.000004397365,0.00017605674,0.000029100962,0.9768365,0.012421669,0.0060831937,0.0008685788],"study_design_scores_gemma":[0.0009829638,0.0012237113,0.030485045,0.00056063634,0.00010024837,0.0000097397515,0.001232406,0.001946597,0.83180255,0.0011636034,0.12991513,0.00057736825],"about_ca_topic_score_codex":0.00002499581,"about_ca_topic_score_gemma":0.002652727,"teacher_disagreement_score":0.14503394,"about_ca_system_score_codex":0.000022914857,"about_ca_system_score_gemma":0.00006366978,"threshold_uncertainty_score":0.2526972},"labels":[],"label_agreement":null},{"id":"W4392004363","doi":"10.1128/msphere.00804-23","title":"Manganese homeostasis modulates fungal virulence and stress tolerance in <i>Candida albicans</i>","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Tryptophan and brain disorders","field":"Neuroscience","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université Laval; Montreal Heart Institute","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Fonds de recherche du Québec; Julius-Maximilians-Universität Würzburg; Canada Foundation for Innovation","keywords":"Virulence; Candida albicans; Microbiology; Homeostasis; Biology; Manganese; Cell biology; Chemistry; Genetics","score_opus":0.012082733601356772,"score_gpt":0.24092676604206545,"score_spread":0.22884403244070867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392004363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903309,0.005719137,0.000025019046,0.00050344435,0.00021242036,0.00014536461,0.00011012046,0.00013119135,0.0028224296],"genre_scores_gemma":[0.9975551,0.0005551531,0.00004852796,0.00056883064,0.000043489108,0.000019694024,0.0000017005832,0.000021582726,0.0011859632],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988496,0.000054257383,0.00014468121,0.00048378456,0.00017604158,0.00029168263],"domain_scores_gemma":[0.99956673,0.00015571744,0.000017982302,0.00017949413,0.000006342378,0.000073726675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053839052,0.00015337735,0.00014060449,0.00004955419,0.000064252934,0.00015078136,0.00018425245,0.000058847705,0.00028565002],"category_scores_gemma":[0.000054854507,0.00013675063,0.000035319466,0.00040706256,0.00013653463,0.00024501793,0.00006232286,0.00018387912,0.00006591769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022872248,0.00039949018,0.03434052,0.0013233584,0.000023308685,0.002771318,0.0048841545,0.0017065231,0.50696975,0.008416251,0.006020987,0.4329156],"study_design_scores_gemma":[0.0028503013,0.00033462097,0.12781703,0.0016740533,0.000026504233,0.0002712787,0.003376646,0.035100486,0.7665085,0.007843891,0.05214241,0.0020542792],"about_ca_topic_score_codex":0.00015132346,"about_ca_topic_score_gemma":0.00039455804,"teacher_disagreement_score":0.43086132,"about_ca_system_score_codex":0.00002096821,"about_ca_system_score_gemma":0.000028486797,"threshold_uncertainty_score":0.5576529},"labels":[],"label_agreement":null},{"id":"W4392458333","doi":"10.1128/msphere.00741-23","title":"Phylogenomic and phenotypic analyses highlight the diversity of antibiotic resistance and virulence in both human and non-human <i>Acinetobacter baumannii</i>","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Manitoba","funders":"Agriculture and Agri-Food Canada; Ottawa Hospital Research Institute","keywords":"Acinetobacter baumannii; Virulence; Biology; Human pathogen; Microbiology; Antibiotic resistance; Antibiotics; Pathogen; Galleria mellonella; Multiple drug resistance; Drug resistance; Mobile genetic elements; Virology; Plasmid; Gene; Bacteria; Genetics; Pseudomonas aeruginosa","score_opus":0.014653903317427218,"score_gpt":0.280115345889763,"score_spread":0.2654614425723358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392458333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99061745,0.008173274,0.00003208423,0.00008341591,0.000043831606,0.00014019171,0.00002373933,0.000007354695,0.00087867153],"genre_scores_gemma":[0.99822485,0.00072035805,0.00013162268,0.00005551137,0.000057655474,7.9016974e-7,0.000012975932,0.000015330757,0.00078092],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990827,0.000052939675,0.00019720977,0.00041240922,0.00007875392,0.00017600048],"domain_scores_gemma":[0.9995742,0.000021340777,0.00006383494,0.00027855756,0.000019791474,0.000042303203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014708114,0.00016414805,0.00020514688,0.000029214847,0.00017459723,0.000059250047,0.000154414,0.00009959704,0.000013709861],"category_scores_gemma":[0.000009274207,0.00012510887,0.000033195356,0.00008985137,0.0003803387,0.000011609359,0.00030928312,0.000094490264,0.0000010080037],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037975886,0.000017440698,0.2032896,0.00023400543,0.000053872187,0.000010372934,0.00018312823,0.0000013018401,0.7952195,0.00024615388,0.00053088716,0.00017576663],"study_design_scores_gemma":[0.00035443885,0.000099168625,0.9564495,0.00021141302,0.00006280418,0.000005422223,0.00018362774,0.000015131453,0.040627,0.0002564066,0.0015336644,0.00020143627],"about_ca_topic_score_codex":0.00012752402,"about_ca_topic_score_gemma":0.001236717,"teacher_disagreement_score":0.7545925,"about_ca_system_score_codex":0.000011996958,"about_ca_system_score_gemma":0.000016123293,"threshold_uncertainty_score":0.51017916},"labels":[],"label_agreement":null},{"id":"W4394734725","doi":"10.1128/msphere.00760-23","title":"Monitoring ESBL- <i>Escherichia coli</i> in Swiss wastewater between November 2021 and November 2022: insights into population carriage","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Bundesamt für Gesundheit; Fonds de recherche du Québec; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Carriage; Escherichia coli; Population; Wastewater; Microbiology; Biology; Medicine; Environmental health; Environmental science; Environmental engineering; Genetics","score_opus":0.00764569580197337,"score_gpt":0.2475508056520482,"score_spread":0.23990510985007485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394734725","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99400306,0.004150831,0.00007862638,0.000082817714,0.0005171744,0.00017177222,0.000007929607,0.000016548987,0.00097125396],"genre_scores_gemma":[0.99663466,0.00022718257,0.0006974313,0.000024452982,0.00074486487,0.000009580611,0.00009106219,0.00004555204,0.0015252357],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99882126,0.00005355084,0.0002729247,0.00048077086,0.0001298375,0.0002416308],"domain_scores_gemma":[0.99956185,0.000016648723,0.00004031281,0.000278422,0.00002770607,0.00007508661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000099528836,0.00020702378,0.00020128755,0.00003104324,0.000053590997,0.00010919565,0.00011380059,0.00024243706,0.0000768363],"category_scores_gemma":[0.000019499274,0.00019050796,0.00005127148,0.00016517278,0.000044427805,0.000019360545,0.00012915987,0.00016397673,0.000022538168],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024914598,0.000013809836,0.32836872,0.000098715514,0.000043625496,0.000021792874,0.00018474304,0.000014809953,0.6689363,0.000024643861,0.0002447512,0.0020231488],"study_design_scores_gemma":[0.0005281865,0.00009269487,0.62193394,0.00037200915,0.000044757544,0.0000041793833,0.0003088398,0.000094978306,0.354531,0.0004189671,0.021145668,0.0005247788],"about_ca_topic_score_codex":0.00031472387,"about_ca_topic_score_gemma":0.00064090366,"teacher_disagreement_score":0.31440532,"about_ca_system_score_codex":0.000044338365,"about_ca_system_score_gemma":0.000034447166,"threshold_uncertainty_score":0.7768689},"labels":[],"label_agreement":null},{"id":"W4396511991","doi":"10.1128/msphere.00250-24","title":"The interplay between electron transport chain function and iron regulatory factors influences melanin formation in <i>Cryptococcus neoformans</i>","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Canadian Institute for Advanced Research","keywords":"Cryptococcus neoformans; Melanin; Microbiology; Fungal pathogen; Electron transport chain; Pathogen; Function (biology); Biology; Cell biology; Chemistry; Biochemistry","score_opus":0.008788865949752443,"score_gpt":0.263619474634816,"score_spread":0.2548306086850636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396511991","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941085,0.0026588328,0.0001985057,0.00043744885,0.00017413874,0.00028779882,0.0000046666323,0.00007972219,0.002050388],"genre_scores_gemma":[0.99907386,0.00025130372,0.00000778913,0.000047817062,0.00008132919,0.00003569293,0.000021328284,0.0000103118755,0.00047058327],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99932396,0.0000216317,0.00021895289,0.00013300902,0.00011805505,0.00018440044],"domain_scores_gemma":[0.99975514,0.00007243961,0.000026569165,0.00009073462,0.000018808481,0.000036315887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018511972,0.00011437412,0.00014506125,0.000051431878,0.00015993635,0.00003268525,0.000028521641,0.00007061467,0.000021120595],"category_scores_gemma":[0.000009295781,0.00006970634,0.00004507384,0.00018146072,0.000056439767,0.00022072517,0.000010060985,0.0002269076,0.000008957586],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017259567,0.000034889923,0.953686,0.00041382518,0.00013472982,0.000011647871,0.004050678,0.000040765957,0.006877956,0.001887385,0.0025706708,0.03011885],"study_design_scores_gemma":[0.00033612788,0.00046327594,0.9624272,0.00021821212,0.00008018014,0.000011049149,0.0013977786,0.00022794302,0.0018704874,0.00040956246,0.032444745,0.000113431706],"about_ca_topic_score_codex":0.000111584835,"about_ca_topic_score_gemma":0.00079970685,"teacher_disagreement_score":0.030005418,"about_ca_system_score_codex":0.00008353452,"about_ca_system_score_gemma":0.000021179747,"threshold_uncertainty_score":0.2842542},"labels":[],"label_agreement":null},{"id":"W4399972410","doi":"10.1128/msphere.00203-24","title":"Metatranscriptomic analysis of common mosquito vector species in the Canadian Prairies","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Brandon University","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Vector (molecular biology); Geography; Zoology; Biology; Ecology; Genetics","score_opus":0.02412706172384313,"score_gpt":0.23461918920120192,"score_spread":0.2104921274773588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399972410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99162924,0.0007018911,5.0305687e-8,0.0037841452,0.00015398415,0.00007823797,0.00015317275,0.000013752874,0.003485496],"genre_scores_gemma":[0.9994561,0.000018560819,0.000004784721,0.00022985354,0.00008816306,0.0000073989204,0.000044603723,3.9109517e-7,0.00015015522],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993488,0.00007426786,0.00016602808,0.00013067311,0.00012024364,0.00015999537],"domain_scores_gemma":[0.99977815,0.000108197215,0.000021792977,0.000043837696,0.00001829634,0.000029709776],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002186047,0.00007574534,0.00018606933,0.00002329248,0.00009992492,0.0001683111,0.00023179811,0.000050591236,0.001019132],"category_scores_gemma":[0.000008882209,0.000022111337,0.00013456844,0.0010905197,0.000077177865,0.00008303767,0.000007951409,0.000075062795,0.000010835758],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028817078,0.00010572402,0.2033465,0.000054065975,0.00067704427,0.00004418789,0.004819883,0.000050128026,0.7462228,0.018899608,0.0057761013,0.01997515],"study_design_scores_gemma":[0.00001397741,0.000055502504,0.93917054,0.000018648376,0.00013242156,8.130876e-7,0.00079658366,0.000056557972,0.0018484975,0.00018201319,0.057646062,0.000078366626],"about_ca_topic_score_codex":0.34573328,"about_ca_topic_score_gemma":0.9847664,"teacher_disagreement_score":0.7443743,"about_ca_system_score_codex":0.000026990996,"about_ca_system_score_gemma":0.000019666537,"threshold_uncertainty_score":0.9998941},"labels":[],"label_agreement":null},{"id":"W4400457721","doi":"10.1128/msphere.00476-24","title":"Autoclaving is at least as effective as gamma irradiation for biotic clearing and intentional microbial recolonization of soil","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"U.S. Department of Agriculture; Advanced Research Projects Agency; Defense Advanced Research Projects Agency; U.S. Department of Defense","keywords":"Sterilization (economics); Microcosm; Soil water; Gamma irradiation; Environmental science; Biology; Agronomy; Irradiation; Ecology; Soil science","score_opus":0.019261517238455716,"score_gpt":0.29978709836826606,"score_spread":0.28052558112981035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400457721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967822,0.0007505782,0.00103637,0.00018593046,0.00038464752,0.000327195,0.00004095382,0.000015247926,0.00047688626],"genre_scores_gemma":[0.9974555,0.0000422064,0.00052705506,0.000093044095,0.00016944556,0.000026001246,0.00015292055,0.00002359,0.0015102801],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994048,0.000028573888,0.00014227758,0.00026540246,0.000051765557,0.00010722105],"domain_scores_gemma":[0.99973047,0.000022140803,0.00004972446,0.00010538107,0.00006466947,0.00002761994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000100451914,0.00009156748,0.00008792997,0.000020008734,0.00006586353,0.000030594856,0.00005086801,0.00012649629,0.000058493868],"category_scores_gemma":[0.000075797616,0.00009618941,0.0000640347,0.000054568587,0.00004772165,0.0000072108437,0.00011978396,0.000035737572,0.000013756769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026442812,0.000017276378,0.0019247533,0.000243851,0.000114326336,0.0000011938045,0.00019483591,0.00019009392,0.98148525,0.00028320617,0.0010045157,0.014276247],"study_design_scores_gemma":[0.0008338866,0.0007999477,0.017907476,0.00016906965,0.00008875275,0.000073790376,0.00010758304,0.0030851497,0.9562712,0.0006110939,0.019793345,0.00025872941],"about_ca_topic_score_codex":0.00003091023,"about_ca_topic_score_gemma":0.000074054005,"teacher_disagreement_score":0.025214097,"about_ca_system_score_codex":0.00006286356,"about_ca_system_score_gemma":0.000053571406,"threshold_uncertainty_score":0.39224905},"labels":[],"label_agreement":null},{"id":"W4400457746","doi":"10.1128/msphere.00360-24","title":"PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; University of British Columbia","funders":"Michael Smith Health Research BC; Canada Foundation for Innovation; BC Children's Hospital; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Puppy; Biology; Computational biology; Metagenomics; Primer (cosmetics); Microbiome; Genetics; Gene; Ecology; Chemistry","score_opus":0.04823156810349982,"score_gpt":0.2626261053436916,"score_spread":0.21439453724019175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400457746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6824929,0.00034026438,0.31344783,0.0011255048,0.00065267103,0.0007781432,0.00005853009,0.00013294989,0.00097121176],"genre_scores_gemma":[0.99312645,0.000019346371,0.0045742374,0.00014856247,0.0000622706,0.000028107082,0.00003213222,0.00001280345,0.0019960855],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993965,0.00008790781,0.00012405774,0.00020781971,0.000027745657,0.00015594694],"domain_scores_gemma":[0.99966985,0.00013248531,0.00002651843,0.00013483904,0.000005973762,0.000030325511],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002785084,0.000085954205,0.000084470375,0.000012343533,0.00018161465,0.000026851245,0.00009682275,0.00010893684,0.0016258047],"category_scores_gemma":[0.00002254844,0.00008244412,0.000032656684,0.00008492241,0.00012311175,0.000088562134,0.00005123724,0.0001269276,0.00029397165],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007170486,0.000030016687,0.00004801985,0.000024110506,0.000011957012,8.9822584e-7,0.00026509786,0.00019078041,0.9331663,0.000091022055,0.031249287,0.034850787],"study_design_scores_gemma":[0.0014124364,0.0006083671,0.062919825,0.00007296883,0.0001779242,0.00012698825,0.00023575389,0.07021555,0.2556593,0.013771556,0.5938202,0.0009791248],"about_ca_topic_score_codex":0.00019459402,"about_ca_topic_score_gemma":0.0021548567,"teacher_disagreement_score":0.677507,"about_ca_system_score_codex":0.000041751802,"about_ca_system_score_gemma":0.000010675818,"threshold_uncertainty_score":0.99928683},"labels":[],"label_agreement":null},{"id":"W4401780438","doi":"10.1128/msphere.00222-24","title":"Genetic evidence for a regulated cysteine protease catalytic triad in LegA7, a <i>Legionella pneumophila</i> protein that impinges on a stress response pathway","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; United States-Israel Binational Science Foundation","keywords":"Legionella pneumophila; Ankyrin repeat; Cysteine protease; Biology; Mutant; Protease; Saccharomyces cerevisiae; Cell biology; Cysteine; Secretion; Biochemistry; Ankyrin; Yeast; Genetics; Gene; Enzyme; Bacteria","score_opus":0.04264889305759034,"score_gpt":0.30872574496478383,"score_spread":0.2660768519071935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401780438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873319,0.0070831906,0.00013046166,0.0024196089,0.00011178387,0.0026817177,0.00009055735,0.000052616666,0.00009811258],"genre_scores_gemma":[0.9929527,0.00012822342,0.00016363556,0.00012637304,0.00029320133,0.0010836215,0.000056973928,0.00007253551,0.0051227366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976947,0.0002596012,0.0003251673,0.00085472735,0.00031532234,0.00055051537],"domain_scores_gemma":[0.99891096,0.00013652566,0.00006716162,0.0006409612,0.000086355605,0.00015805289],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006463396,0.00030539735,0.00026147955,0.00011483299,0.00009731401,0.00014725773,0.00035870075,0.00025363127,0.0000065911],"category_scores_gemma":[0.00045047462,0.00025929656,0.0001725151,0.0003420316,0.00010767102,0.00001517875,0.0001318474,0.00024535303,0.00003069663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0070634494,0.00014485301,0.0003309702,0.00066904194,0.000056337478,0.0003455243,0.00015311544,0.00019638632,0.98549956,0.00004334067,0.001473963,0.0040234476],"study_design_scores_gemma":[0.0021737376,0.0026102988,0.0011938465,0.002838086,0.000027399432,0.00007428555,0.0001752583,0.0018882988,0.9656018,0.00021961659,0.02261514,0.00058220426],"about_ca_topic_score_codex":0.00013985667,"about_ca_topic_score_gemma":0.00019252139,"teacher_disagreement_score":0.021141177,"about_ca_system_score_codex":0.000085750806,"about_ca_system_score_gemma":0.0005378856,"threshold_uncertainty_score":0.99998593},"labels":[],"label_agreement":null},{"id":"W4403810102","doi":"10.1128/msphere.00756-23","title":"Expanded geographic distribution for two <i>Legionella pneumophila</i> sequence types of clinical concern","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"U.S. Public Health Service; Centers for Disease Control and Prevention; U.S. Department of Health and Human Services","keywords":"Outbreak; Legionnaires' disease; Legionella pneumophila; Biology; Demography; Geography; Veterinary medicine; Medicine; Virology; Genetics","score_opus":0.060192786917022005,"score_gpt":0.3888171225913408,"score_spread":0.3286243356743188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403810102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913321,0.0035715152,0.0026910172,0.00047180962,0.00042067573,0.0002761785,0.00024048315,0.00002758016,0.0009686351],"genre_scores_gemma":[0.9972592,0.00061140314,0.00010866124,0.000080816666,0.00053400977,0.000030293095,0.0004349145,0.000017999435,0.00092272577],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989813,0.000048547645,0.00028572849,0.0003418128,0.0001298648,0.00021277115],"domain_scores_gemma":[0.99945945,0.000057290446,0.000049046957,0.00023607622,0.00012168871,0.00007645239],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003147082,0.000107378015,0.00017032774,0.000010147161,0.000052049872,0.000028104923,0.00016956865,0.0001406542,0.000013539],"category_scores_gemma":[0.000084271494,0.00009045669,0.00021067522,0.00011903949,0.00020264214,0.0000046503073,0.0000658595,0.00011215079,0.000013098706],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005315088,0.00018555112,0.035181377,0.0004896709,0.0003428076,0.000033138956,0.000048159938,0.000115693976,0.87348497,0.004628715,0.04483822,0.040120162],"study_design_scores_gemma":[0.0021265366,0.0012065996,0.002996061,0.00022095782,0.00010609815,0.000049651488,0.00012849708,0.0031758184,0.36259133,0.002472796,0.6243824,0.0005433052],"about_ca_topic_score_codex":0.000051345287,"about_ca_topic_score_gemma":0.00003393601,"teacher_disagreement_score":0.5795441,"about_ca_system_score_codex":0.00000680496,"about_ca_system_score_gemma":0.00015346083,"threshold_uncertainty_score":0.36887166},"labels":[],"label_agreement":null},{"id":"W4403945707","doi":"10.1128/msphere.00553-24","title":"The promiscuous biotin ligase TurboID reveals the proxisome of the T3SS chaperone IpgC in <i>Shigella flexneri</i>","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; University of Illinois at Urbana-Champaign; Canadian Institutes of Health Research; University of Ottawa","keywords":"Chaperone (clinical); Biology; Biotin; Type three secretion system; Shigella flexneri; Biochemistry; Escherichia coli; Effector; DNA ligase; Cell biology; Gene; Virulence","score_opus":0.004301148553657887,"score_gpt":0.21768609707911862,"score_spread":0.21338494852546075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403945707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9318364,0.051630966,0.0000025786092,0.008805,0.0005700003,0.0005710139,0.000015040349,0.000019668949,0.0065493314],"genre_scores_gemma":[0.98396486,0.0023706956,0.000021643498,0.00028017597,0.00018800082,0.000033529883,0.0000041186504,0.000023130684,0.013113844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989529,0.00012001783,0.00025319602,0.00027041716,0.00013897366,0.00026446677],"domain_scores_gemma":[0.9993673,0.00003945385,0.00006339644,0.00046733112,0.000035678448,0.000026862235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003472638,0.00016058741,0.00013656773,0.000008043921,0.00020102621,0.000043166583,0.00040155844,0.0001833046,0.000011105781],"category_scores_gemma":[0.00007124849,0.000065118875,0.00012875456,0.0002259481,0.0003289461,0.0000020411485,0.00025434545,0.00028471698,0.000015688582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008948469,0.00010594139,0.0023603514,0.0002039827,0.00025175532,0.000011157671,0.0009267876,0.00004030648,0.9509555,0.0008611416,0.034944627,0.009248956],"study_design_scores_gemma":[0.00046826113,0.00023364116,0.0041088993,0.00032156357,0.00005726488,0.000037945687,0.0011197028,0.00008130254,0.65966904,0.00048300394,0.33313403,0.00028532557],"about_ca_topic_score_codex":0.000027250677,"about_ca_topic_score_gemma":0.00020735158,"teacher_disagreement_score":0.2981894,"about_ca_system_score_codex":0.000011731637,"about_ca_system_score_gemma":0.00006230739,"threshold_uncertainty_score":0.26554704},"labels":[],"label_agreement":null},{"id":"W4404759566","doi":"10.1128/msphere.00848-24","title":"The buoyancy of cryptococcal cells and its implications for transport and persistence of <i>Cryptococcus</i> in aqueous environments","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Heart, Lung, and Blood Institute; Johns Hopkins Bloomberg School of Public Health; Centers for Disease Control and Prevention; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Johns Hopkins University","keywords":"Cryptococcus gattii; Cryptococcosis; Cryptococcus neoformans; Cryptococcus; Biology; Microbiology; Ecology","score_opus":0.020719070810157187,"score_gpt":0.26608298754031784,"score_spread":0.24536391673016064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404759566","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97495747,0.021288292,0.00030286578,0.00096221955,0.000057180536,0.000917121,0.0000895998,0.000009367466,0.001415902],"genre_scores_gemma":[0.99740636,0.0017801782,0.00017827765,0.000016525848,0.000012724266,0.00011823469,0.0000019307247,0.0000063319058,0.0004794436],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996128,0.000005878904,0.00015164573,0.00011230358,0.000037482503,0.000079862824],"domain_scores_gemma":[0.99975425,0.00010815117,0.000020308358,0.00007818922,0.000014713213,0.000024397783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000652905,0.000056745183,0.00012743215,0.000014429082,0.000054270957,0.0000034065408,0.000021558064,0.00003078469,0.000010682995],"category_scores_gemma":[0.000010019084,0.00003840345,0.000038168782,0.00006774959,0.00008618305,0.00002232889,0.000010010762,0.000052895193,6.760371e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002882231,0.00050414825,0.3499808,0.0031204235,0.00041289002,0.00000980733,0.0040542395,0.000048092686,0.5605167,0.013693551,0.00243976,0.064931355],"study_design_scores_gemma":[0.0017165304,0.0010246006,0.87852824,0.00067009375,0.0003243831,0.00003338358,0.0014955748,0.0009124286,0.027109757,0.0014607797,0.086507745,0.0002164908],"about_ca_topic_score_codex":0.00001712387,"about_ca_topic_score_gemma":0.00005903111,"teacher_disagreement_score":0.533407,"about_ca_system_score_codex":0.000010829827,"about_ca_system_score_gemma":0.000016267428,"threshold_uncertainty_score":0.15660472},"labels":[],"label_agreement":null},{"id":"W4405512055","doi":"10.1128/msphere.00606-24","title":"Skin-associated <i>Corynebacterium amycolatum</i> shares cobamides","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre; McMaster University","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Corrinoid; Escherichia coli; Microbiome; Biochemistry; Biosynthesis; Bacteria; Corynebacterium; Mutagenesis; Microbiology; Function (biology); Genetics; Gene; Methyltransferase; Mutation; Methylation","score_opus":0.009324384555536143,"score_gpt":0.2601401919923132,"score_spread":0.25081580743677706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405512055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90582937,0.018107256,0.000019101108,0.0018104926,0.0008859522,0.00027227835,0.00010218822,0.0007720712,0.07220129],"genre_scores_gemma":[0.9852974,0.00008397741,0.000047685277,0.0013371895,0.0001401132,0.000025225692,0.00013004166,0.000030853524,0.012907524],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9991283,0.00003956105,0.00017769713,0.0002489904,0.0001487971,0.00025665382],"domain_scores_gemma":[0.99947727,0.000109771776,0.000024288045,0.00020268516,0.00005156198,0.00013443195],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00006261005,0.0001458808,0.0002426082,0.000037064085,0.00006724487,0.000059902097,0.000080888305,0.00014528753,0.0033236458],"category_scores_gemma":[0.00012555017,0.00012076509,0.0001443616,0.00020646301,0.00007645237,0.00010644664,0.000037685077,0.00020475285,0.0010644464],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011957264,0.00021933953,0.12304277,0.00042964547,0.00032937218,0.0019796975,0.00019381936,0.0000014194873,0.001186638,0.0006175067,0.8668053,0.0050748806],"study_design_scores_gemma":[0.0011103806,0.00013155882,0.5309711,0.0011099525,0.00044164716,0.00046370886,0.00022093498,0.00050135975,0.0034788037,0.0012541077,0.45993423,0.00038222765],"about_ca_topic_score_codex":0.00001814098,"about_ca_topic_score_gemma":0.000037449274,"teacher_disagreement_score":0.40792832,"about_ca_system_score_codex":0.00004725708,"about_ca_system_score_gemma":0.0001267817,"threshold_uncertainty_score":0.99971336},"labels":[],"label_agreement":null},{"id":"W4405571132","doi":"10.1128/msphere.00891-24","title":"The <i>Legionella pneumophila</i> effector PieF modulates mRNA stability through association with eukaryotic CCR4−NOT","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Government of Ontario; Ontario Genomics; Genome Canada","keywords":"Legionella pneumophila; Effector; Biology; Cell biology; Nuclease; Genetics; Gene","score_opus":0.011633674093220385,"score_gpt":0.24718931234182684,"score_spread":0.23555563824860645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405571132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98813194,0.0032612032,0.00015044244,0.00414298,0.00034234315,0.00035027432,0.000028351444,0.00005930326,0.0035331792],"genre_scores_gemma":[0.99447054,0.00062736263,0.00005990384,0.00024241088,0.0004771103,0.000044929104,0.000058188605,0.000039854425,0.0039797174],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99843156,0.00014053615,0.00017920502,0.00046001986,0.00036617316,0.0004225153],"domain_scores_gemma":[0.99916834,0.0001563113,0.00005034273,0.00043893114,0.000113867856,0.00007222152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004215615,0.00019317986,0.00014385459,0.000009146678,0.0002675644,0.00020750084,0.00025196286,0.00017172893,0.000021176593],"category_scores_gemma":[0.000099238205,0.00011876671,0.00011442058,0.00018803775,0.000115314855,0.0000125547995,0.00011003527,0.0002544599,0.00010996278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006200689,0.00022520556,0.0791819,0.0004417891,0.00077639276,0.00008425411,0.0004631681,0.00038561635,0.80458236,0.000861895,0.105307646,0.00706968],"study_design_scores_gemma":[0.0008579499,0.0007664121,0.008189588,0.000115454466,0.00008348564,0.000034666915,0.00020194922,0.0011516458,0.61503255,0.0007358303,0.37227082,0.00055962673],"about_ca_topic_score_codex":0.000091938506,"about_ca_topic_score_gemma":0.000117494805,"teacher_disagreement_score":0.26696318,"about_ca_system_score_codex":0.000090933834,"about_ca_system_score_gemma":0.00013387823,"threshold_uncertainty_score":0.4843166},"labels":[],"label_agreement":null},{"id":"W4405571198","doi":"10.1128/msphere.00668-24","title":"Identification of novel fructo-oligosaccharide bacterial consumers by pulse metatranscriptomics in a human stool sample","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill Genome Centre; Agriculture and Agri-Food Canada; McGill University","funders":"Canadian Glycomics Network; Canadian Institutes of Health Research; University of Alberta","keywords":"Prebiotic; Fructan; Biology; Metagenomics; Gut flora; Prevotella; Glycan; Inulin; Fructooligosaccharide; Microbiology; Ruminococcus; Glycoside hydrolase; Microbiome; Microbial metabolism; Fermentation; Biochemistry; Bacteria; Gene; Genetics; Fructose; Glycoprotein","score_opus":0.0147080109609635,"score_gpt":0.2759861165353488,"score_spread":0.2612781055743853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405571198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99097556,0.0019769014,0.0020951475,0.0005071098,0.002719775,0.00039452265,0.0011108895,0.00016064629,0.000059422393],"genre_scores_gemma":[0.9976427,0.000020907257,0.0019128596,0.00006086477,0.00006671912,0.00001928817,0.00015946152,0.000046693418,0.000070510854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983876,0.00006462488,0.00067275716,0.0004288193,0.00013597493,0.0003102293],"domain_scores_gemma":[0.99931234,0.00008815714,0.00012558488,0.000391758,0.000043541277,0.000038614286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029440792,0.00019164737,0.00034217446,0.00015647833,0.00004966997,0.00008048168,0.00032837343,0.00028647066,0.0005322249],"category_scores_gemma":[0.00016338237,0.00020699837,0.00010297752,0.0004593436,0.00019373492,0.00017975157,0.000042682917,0.00033700423,0.000023236811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008863336,0.000109109445,0.00019398867,0.00016601413,0.00005097363,0.0000016932224,0.00041873846,0.0000054413154,0.98603547,0.0017093834,0.0014613795,0.009759191],"study_design_scores_gemma":[0.0007588861,0.000059980295,0.0002819696,0.00008857953,0.00009998025,0.000008952835,0.00015438374,0.0003187517,0.9680101,0.0009799586,0.029015157,0.00022325318],"about_ca_topic_score_codex":0.0009649964,"about_ca_topic_score_gemma":0.0005877381,"teacher_disagreement_score":0.027553776,"about_ca_system_score_codex":0.00011071534,"about_ca_system_score_gemma":0.000033530207,"threshold_uncertainty_score":0.8441149},"labels":[],"label_agreement":null},{"id":"W4405799397","doi":"10.1128/msphere.00825-24","title":"Dextran sodium sulfate-induced colitis alters the proportion and composition of replicating gut bacteria","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Faculty of Medicine and Health, University of Sydney; Fonds de recherche du Québec – Nature et technologies; Fonds de recherche du Québec; McGill University; Faculty of Medicine, McGill University; Kenneth Rainin Foundation; Canadian Institutes of Health Research; McGill University Health Centre; Canada Research Chairs","keywords":"Akkermansia; Akkermansia muciniphila; Colitis; Bacteria; Biology; Gut flora; Microbiology; Microbiome; Ex vivo; Immunology; In vivo; Lactobacillus; Bioinformatics; Genetics","score_opus":0.011717720937869238,"score_gpt":0.26685640946306804,"score_spread":0.25513868852519883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405799397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979528,0.00052886136,0.00015024836,0.0006618263,0.00009506511,0.00019035899,0.000016794158,0.000012318014,0.00039170048],"genre_scores_gemma":[0.99920696,0.00009088709,0.00026044637,0.00010030328,0.000091718255,0.000010952957,0.00009799729,0.000011031132,0.00012970986],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994746,0.0000354519,0.00014901267,0.00018771325,0.000040595492,0.0001126629],"domain_scores_gemma":[0.99972135,0.0000053636936,0.000045059725,0.00016622496,0.000032512256,0.00002948194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011866416,0.00006697734,0.00007042273,0.0000074045524,0.00006825969,0.000027318787,0.000052976255,0.00006745573,0.000021956128],"category_scores_gemma":[0.0000051173524,0.000050599112,0.0000303428,0.00004042653,0.000041093008,0.0000028895088,0.000028406252,0.000057524445,0.000003322437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026772228,0.000010013423,0.00032717825,0.00012759579,0.000015104055,0.0000011085382,0.00014151014,5.0866106e-7,0.9939262,0.00013494543,0.0006816748,0.0046073734],"study_design_scores_gemma":[0.00023654783,0.00023684284,0.051475372,0.00011472584,0.000027286496,0.000069468806,0.00027577023,0.00009519444,0.93847996,0.000072349656,0.008789904,0.00012659842],"about_ca_topic_score_codex":0.00007625132,"about_ca_topic_score_gemma":0.000065214146,"teacher_disagreement_score":0.055446275,"about_ca_system_score_codex":0.000009130386,"about_ca_system_score_gemma":0.000047965834,"threshold_uncertainty_score":0.20633718},"labels":[],"label_agreement":null},{"id":"W4406927552","doi":"10.1128/msphere.01078-24","title":"Structural analysis of extracellular ATP-independent chaperones of streptococcal species and protein substrate interactions","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Signaling Pathways in Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto","funders":"Argonne National Laboratory; Office of Science; National Institute of General Medical Sciences; Michigan Technology Tri-Corridor; Directorate for Biological Sciences; U.S. Department of Health and Human Services; National Institutes of Health; National Institute of Allergy and Infectious Diseases; University of Pittsburgh; Northwestern University; U.S. Department of Energy","keywords":"Foldase; Pneumolysin; Virulence; Biology; Chaperone (clinical); Peptidylprolyl isomerase; Cyclophilin; Secretion; Microbiology; Streptococcus pneumoniae; Protein folding; Extracellular; Streptococcus pyogenes; Isomerase; Cell biology; Biochemistry; Bacteria; GroEL; Gene; Genetics","score_opus":0.012524439732267181,"score_gpt":0.2585577048721447,"score_spread":0.2460332651398775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406927552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976775,0.0010944795,0.00037805433,0.0000336469,0.000047266898,0.00016488119,0.00006649446,0.0000054567254,0.0005322269],"genre_scores_gemma":[0.9976787,0.000008014127,0.00024247007,0.0000067350848,0.000020406815,0.000015089415,0.00005828034,0.000005709932,0.0019645907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993506,0.000033292214,0.00022414146,0.00021037931,0.000085275184,0.00009633314],"domain_scores_gemma":[0.99952435,0.00001042813,0.000102622434,0.0002491502,0.00007897929,0.00003443646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054164022,0.00009773778,0.00017649776,0.00004655008,0.00003097081,0.000010198265,0.00010923249,0.00006238339,0.00022905979],"category_scores_gemma":[0.00003775423,0.000091610535,0.000116197574,0.00018765197,0.00010892623,0.0000033425863,0.00007164896,0.000051842595,3.8102914e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007132194,0.000036503137,0.04864118,0.000053248423,0.0005463472,0.00000166754,0.00006471402,0.0004775782,0.9491011,0.0004507507,0.000032680586,0.0005229226],"study_design_scores_gemma":[0.00025387917,0.000058655663,0.0812251,0.00003348783,0.0003133191,6.407124e-7,0.00042526372,0.00056689716,0.91631776,0.000069632566,0.0006419809,0.00009337885],"about_ca_topic_score_codex":0.00003401769,"about_ca_topic_score_gemma":0.00015922864,"teacher_disagreement_score":0.03278332,"about_ca_system_score_codex":0.000007121375,"about_ca_system_score_gemma":0.000043505574,"threshold_uncertainty_score":0.3735769},"labels":[],"label_agreement":null},{"id":"W4406965687","doi":"10.1128/msphere.00866-24","title":"Detection of chronic wasting disease prions in the farm soil of the Republic of Korea","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"Animal and Plant Quarantine Agency","keywords":"Chronic wasting disease; Infectivity; Prion protein; Biology; Incubation; Bioassay; Virology; Veterinary medicine; Disease; Virus; Ecology; Internal medicine; Medicine","score_opus":0.006151830301891193,"score_gpt":0.2356747955666794,"score_spread":0.2295229652647882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406965687","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98547715,0.0132598365,0.00035394187,0.00017277333,0.000048999143,0.00016519404,0.000013774359,0.0000019730119,0.0005063319],"genre_scores_gemma":[0.999432,0.0003870111,0.000015366526,0.000039427425,0.000024827285,0.000015336787,0.000004776899,0.0000036143974,0.00007760674],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995029,0.00007047446,0.00016975959,0.00010397994,0.00007333783,0.00007955891],"domain_scores_gemma":[0.9995005,0.000015833686,0.00010311347,0.00032307382,0.00004311735,0.000014363495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014011505,0.000051968513,0.00007063107,0.000013460611,0.000036921756,0.000004040779,0.00020358243,0.000040138562,0.000011705092],"category_scores_gemma":[0.00019712433,0.000033597506,0.00009494306,0.00017724009,0.000057621004,0.0000014818856,0.00009506834,0.00004956825,9.997287e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000066218236,0.000112360336,0.026162334,0.00045343602,0.00003488421,3.910239e-7,0.00005273555,0.0007117715,0.86912614,0.00036654915,0.0000819326,0.10283124],"study_design_scores_gemma":[0.0006369837,0.00010712117,0.1481275,0.0004636397,0.000063863125,9.688699e-7,0.00035203795,0.00087605056,0.8425964,0.00049433345,0.006180402,0.00010071789],"about_ca_topic_score_codex":0.000046945628,"about_ca_topic_score_gemma":0.0003063283,"teacher_disagreement_score":0.12196516,"about_ca_system_score_codex":0.0000101270625,"about_ca_system_score_gemma":0.00015165537,"threshold_uncertainty_score":0.13700664},"labels":[],"label_agreement":null},{"id":"W4407528086","doi":"10.1128/msphere.00789-24","title":"Characterization of diet-linked amino acid pool influence on <i>Fusobacterium</i> spp. growth and metabolism","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Dental and Craniofacial Research; Canadian Institutes of Health Research; Cancer Research UK; National Institutes of Health; Case Western Reserve University","keywords":"Fusobacterium; Amino acid; Fusobacteria; Biology; Microbiology; Bacteria; Biochemistry; Food science; Bacteroides; 16S ribosomal RNA; Genetics","score_opus":0.0044468646417630256,"score_gpt":0.22508457758733932,"score_spread":0.2206377129455763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407528086","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981526,0.00034601561,0.00012808536,0.00025952552,0.00010578857,0.00016063928,0.000037973725,0.000009316163,0.0008000249],"genre_scores_gemma":[0.99727726,0.00060010754,0.00011142472,0.0012949838,0.000054290573,0.0000089238765,0.00014099469,0.000009831251,0.0005021823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934983,0.000035213383,0.00018221431,0.00023460039,0.000047535814,0.00015060467],"domain_scores_gemma":[0.9996335,0.0000043938326,0.00008106173,0.00017389328,0.00006524514,0.000041940453],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000049604456,0.00011848981,0.00015731368,0.00002246834,0.00005011787,0.000015191773,0.000091542286,0.0001309372,0.000016780663],"category_scores_gemma":[0.000029119563,0.00011071463,0.00003614726,0.00008995339,0.000053027212,0.0000050738986,0.00006819438,0.00006971058,0.000005393298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011666751,0.000041752774,0.004269971,0.000104340594,0.000022338656,5.301105e-7,0.000025289857,5.531614e-7,0.9940639,0.00020555953,0.00012571184,0.0010233878],"study_design_scores_gemma":[0.0003307279,0.0001093359,0.3473569,0.000036035948,0.000015377858,0.0000011323735,0.000010291497,0.000002354857,0.6425312,0.00001948696,0.009507676,0.00007947758],"about_ca_topic_score_codex":0.00002790708,"about_ca_topic_score_gemma":0.000015131466,"teacher_disagreement_score":0.35153267,"about_ca_system_score_codex":0.0000050437775,"about_ca_system_score_gemma":0.000056662408,"threshold_uncertainty_score":0.45148116},"labels":[],"label_agreement":null},{"id":"W4407535566","doi":"10.1128/msphere.00819-24","title":"Abundance of clinically relevant antimicrobial resistance genes in the golden jackal ( <i>Canis aureus</i> ) gut","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto and Region Conservation Authority","funders":"Instituto Nacional de Pesquisas da Amazônia","keywords":"Resistome; Metagenomics; Biology; Jackal; Antibiotic resistance; Microbiome; Microbiology; Pyrosequencing; Genetics; Gene; Zoology; Antibiotics","score_opus":0.0069621375068545,"score_gpt":0.2645795113074233,"score_spread":0.2576173738005688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407535566","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98574483,0.0016058104,0.0004987556,0.00091418996,0.00026722808,0.0002367895,0.000037730464,0.000008369025,0.010686287],"genre_scores_gemma":[0.9893156,0.00082046975,0.0033036214,0.00086895155,0.00012679452,0.0000061489254,0.000027760296,0.000015925807,0.005514674],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99854916,0.00014227879,0.00055735663,0.0003767089,0.00012595732,0.0002485214],"domain_scores_gemma":[0.9989629,0.00005668856,0.00018077482,0.00069520035,0.00008204185,0.00002241712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041192124,0.00015827783,0.00023726988,0.000016670292,0.00005659996,0.000030171896,0.00063978985,0.00019177563,0.000024269717],"category_scores_gemma":[0.00018395165,0.00012518963,0.00011014561,0.00019195554,0.00023068214,0.0000042815805,0.00011758851,0.00013576198,0.0000075346265],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046781517,0.00012881018,0.071004674,0.00016465645,0.00004937931,0.00001376946,0.000092448696,0.000020190904,0.869228,0.0006048275,0.057370532,0.00085488224],"study_design_scores_gemma":[0.0023612725,0.000299421,0.1945155,0.0008525589,0.000082651044,0.000012920771,0.0008775631,0.000016532305,0.26111022,0.00097655645,0.53821117,0.00068363175],"about_ca_topic_score_codex":0.000030578125,"about_ca_topic_score_gemma":0.0012087122,"teacher_disagreement_score":0.60811776,"about_ca_system_score_codex":0.00001640373,"about_ca_system_score_gemma":0.00017048548,"threshold_uncertainty_score":0.51050854},"labels":[],"label_agreement":null},{"id":"W4407760723","doi":"10.1128/msphere.00652-24","title":"Cross-laboratory replication of pseudomyxoma peritonei tumor microbiome reveals reproducible microbial signatures","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institutes of Health; National Institute of General Medical Sciences; National Organization for Rare Disorders","keywords":"Microbiome; Biology; Cancer; Peritoneal cavity; Carcinogenesis; Medicine; Pathology; Computational biology; Bioinformatics; Genetics","score_opus":0.005851959176081351,"score_gpt":0.28907779737288114,"score_spread":0.2832258381967998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407760723","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934799,0.003900158,0.000069507354,0.00036908026,0.00029545077,0.00033844658,0.00014291033,0.000024831115,0.0013796844],"genre_scores_gemma":[0.9883937,0.000078813435,0.0024389115,0.0009811237,0.000159998,0.000021305867,0.00019906487,0.000024855304,0.0077022146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99836713,0.000074355805,0.00040405444,0.000824333,0.00005955817,0.00027055282],"domain_scores_gemma":[0.99811053,0.000009181564,0.00018189258,0.001361177,0.00028513474,0.00005207615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039188628,0.00017558131,0.00023674361,0.000050063747,0.0001225615,0.00003198027,0.0002960828,0.00021986109,0.0000998475],"category_scores_gemma":[0.00015183626,0.00017927025,0.000102113474,0.00028734328,0.00015479013,0.00000570187,0.00013080768,0.00013416402,0.000015901745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011812652,0.000091268405,0.006917718,0.00021951097,0.000036026147,0.0000017344856,0.00002871615,0.000009733305,0.93454236,0.00010574564,0.057642903,0.00028612986],"study_design_scores_gemma":[0.00047532681,0.000094390685,0.027928991,0.00006419204,0.000015691086,0.000008840628,0.000031416446,0.0000013551432,0.85985875,0.000036452846,0.11132892,0.00015567536],"about_ca_topic_score_codex":0.000054689004,"about_ca_topic_score_gemma":0.00003188341,"teacher_disagreement_score":0.074683644,"about_ca_system_score_codex":0.00003153128,"about_ca_system_score_gemma":0.0003028989,"threshold_uncertainty_score":0.73104286},"labels":[],"label_agreement":null},{"id":"W4407907738","doi":"10.1128/msphere.01032-24","title":"Neonatal administration of <i>Lactiplantibacillus plantarum</i> ATCC 202195 with or without fructooligosaccharide in Bangladesh: a placebo-controlled randomized trial","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Hospital for Sick Children; Public Health Ontario; SickKids Foundation; University of Toronto; Institute for Clinical Evaluative Sciences","funders":"Bill and Melinda Gates Foundation","keywords":"Fructooligosaccharide; Regimen; Placebo; Medicine; Randomized controlled trial; Colonization; Internal medicine; Sepsis; Physiology; Biology; Microbiology","score_opus":0.010627820998052836,"score_gpt":0.28297063492055863,"score_spread":0.2723428139225058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407907738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9797088,0.00036898733,0.00053350243,0.0025042482,0.0011284865,0.0061374623,0.00014840848,0.00010974936,0.009360339],"genre_scores_gemma":[0.99627167,0.00005569462,0.0010398531,0.0007826249,0.00015750433,0.00025412365,0.00012938962,0.00002282815,0.0012862918],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9975451,0.00045705156,0.00094327657,0.00035523143,0.00032141322,0.00037789182],"domain_scores_gemma":[0.9983293,0.0008473389,0.00037618104,0.0002705696,0.000093360795,0.000083280145],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082056026,0.00027332804,0.0014546821,0.00017711427,0.00011353391,0.000056609995,0.00016681598,0.00021071895,0.00046853133],"category_scores_gemma":[0.0002517808,0.00019491058,0.00017489919,0.00038872747,0.00011979834,0.00017699093,0.000019547611,0.00035264198,0.000014098279],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9949819,0.00019869578,0.00068375806,0.00023558569,0.00009648519,0.00005238618,0.0005093274,0.000012775394,0.00026989842,0.00043750377,0.0016590733,0.0008626027],"study_design_scores_gemma":[0.9893449,0.00079610536,0.000055304263,0.00061246014,0.00017086572,0.00006155014,0.0006227025,0.0013373074,0.0043060547,0.00018990268,0.0022664317,0.00023643764],"about_ca_topic_score_codex":0.0006362776,"about_ca_topic_score_gemma":0.0070060827,"teacher_disagreement_score":0.016562873,"about_ca_system_score_codex":0.00011098453,"about_ca_system_score_gemma":0.00044292829,"threshold_uncertainty_score":0.7948223},"labels":[],"label_agreement":null},{"id":"W4407920046","doi":"10.1128/msphere.01037-24","title":"Exploring the differential localization of protein kinase A isoforms in <i>Candida albicans</i>","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Filamentation; Cytosol; Protein subunit; Protein kinase A; Biology; Candida albicans; Cytoplasm; Cell biology; Gene isoform; Biochemistry; Subcellular localization; Kinase; Gene; Genetics; Enzyme","score_opus":0.02935694493078373,"score_gpt":0.26552441687160006,"score_spread":0.23616747194081633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407920046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98922276,0.00022918092,0.0051714294,0.00038783392,0.00006230604,0.00045149424,0.000002375449,0.000016204724,0.004456391],"genre_scores_gemma":[0.9977105,0.000041926276,0.00003709799,0.00012810004,0.00002358445,0.00006460745,0.0000046254845,0.0000057978045,0.00198376],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999335,0.00002941901,0.0002171795,0.00013971895,0.00014357409,0.00013513099],"domain_scores_gemma":[0.9996254,0.000024859051,0.00003535591,0.0002440854,0.000045410066,0.000024896863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010276496,0.0000760878,0.00017644952,0.000026834943,0.000043020056,0.0000070837646,0.00006707721,0.00003326947,0.00021707675],"category_scores_gemma":[0.00009239393,0.000046824258,0.000055753102,0.00030858553,0.00007364359,0.00006339448,0.000028308288,0.00011901311,0.0000035535218],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018946494,0.00068703963,0.7946424,0.0015435574,0.00008287671,0.0000319333,0.0014585003,0.000086816595,0.053325497,0.004147729,0.0006549887,0.14144403],"study_design_scores_gemma":[0.0028271957,0.00024205318,0.9112729,0.0021955948,0.00008101925,0.0000011348694,0.0029982002,0.0016743016,0.071298376,0.0012655726,0.0059618573,0.00018178715],"about_ca_topic_score_codex":0.0004010614,"about_ca_topic_score_gemma":0.0013856472,"teacher_disagreement_score":0.14126223,"about_ca_system_score_codex":0.00005065222,"about_ca_system_score_gemma":0.000085930384,"threshold_uncertainty_score":0.23768382},"labels":[],"label_agreement":null},{"id":"W4409411608","doi":"10.1128/msphere.00098-25","title":"Characterizing antimicrobial activity of environmental <i>Streptomyces</i> spp. and oral bacterial and fungal isolates from <i>Canis familiaris</i> and <i>Felis catus</i>","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto","funders":"NHLBI Division of Intramural Research; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Canadian Institute for Advanced Research","keywords":"Antimicrobial; Microbiology; Biology; Candida albicans","score_opus":0.004507252319290055,"score_gpt":0.19053363841792403,"score_spread":0.18602638609863398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409411608","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954246,0.0016002323,0.000015028584,0.0002761328,0.00054379937,0.00018885349,0.0013966355,0.00003769359,0.0005170011],"genre_scores_gemma":[0.99696696,0.001097141,0.00014723351,0.00041093142,0.00005623044,0.0000042678084,0.000136229,0.000020369454,0.0011606293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987829,0.00010873937,0.0002708223,0.00048277396,0.000025050831,0.00032974052],"domain_scores_gemma":[0.9994784,0.00012722463,0.000156748,0.00019174135,0.0000115003695,0.00003441338],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008018834,0.00030490558,0.0005322745,0.00004059457,0.00024482218,0.000065130946,0.00010775131,0.00030901123,0.00037017837],"category_scores_gemma":[0.000009406638,0.00029612595,0.00006566247,0.0000550557,0.00067931606,0.00029127364,0.00034024974,0.00029757738,0.000009893745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040655636,0.000101707315,0.024217855,0.000059179405,0.0001796507,0.000003329912,0.00026092527,1.0716494e-7,0.96095186,0.000020550562,0.0031085135,0.010689773],"study_design_scores_gemma":[0.0018308763,0.000111708185,0.0983928,0.00013078706,0.00014563835,0.00003265773,0.0003015112,0.0000028515494,0.875128,0.000041508483,0.023560729,0.00032094048],"about_ca_topic_score_codex":0.0015089914,"about_ca_topic_score_gemma":0.00014908671,"teacher_disagreement_score":0.08582386,"about_ca_system_score_codex":0.00002076638,"about_ca_system_score_gemma":0.000033835826,"threshold_uncertainty_score":0.9999491},"labels":[],"label_agreement":null},{"id":"W4409504763","doi":"10.1128/msphere.00940-24","title":"Meningococcal vaccine 4CMenB elicits a robust cellular immune response that targets but is not consistently protective against <i>Neisseria gonorrhoeae</i> during murine vaginal infection","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Neisseria gonorrhoeae; Immunology; Immune system; Gonorrhea; Biology; Humoral immunity; Vaccination; Pathogen; Acquired immune system; Cellular immunity; Virology; Microbiology","score_opus":0.011696186885403114,"score_gpt":0.22768682071027435,"score_spread":0.21599063382487124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409504763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929243,0.0017816197,0.0005879924,0.0008613092,0.0017481357,0.00092265726,0.000060014474,0.00029577818,0.00081822847],"genre_scores_gemma":[0.9908968,0.00014870775,0.000072479656,0.00020659814,0.00009731328,0.00026421956,0.000087649394,0.000042602718,0.008183609],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99766886,0.0005403097,0.0005446642,0.0006346539,0.000021040758,0.0005904581],"domain_scores_gemma":[0.99884444,0.0001291957,0.00024217686,0.0005180177,0.00022021838,0.000045935656],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044679703,0.0004531728,0.0005816655,0.00021606639,0.0007493499,0.00008441463,0.00019804033,0.00044093688,0.0014057263],"category_scores_gemma":[0.00013246335,0.00042867343,0.0002274385,0.00047413053,0.000073437855,0.00024506103,0.00023362107,0.0006021591,0.0002901879],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048076534,0.00024307416,0.006648487,0.00009477904,0.0004839189,0.000005042783,0.00024118154,0.00006423377,0.9845996,0.00004339794,0.0010730295,0.00169559],"study_design_scores_gemma":[0.004228993,0.0002863306,0.11303137,0.0001917131,0.00012430231,0.00008519304,0.00023430581,0.000022556816,0.8352125,0.000030095216,0.04613254,0.0004200645],"about_ca_topic_score_codex":0.0010408895,"about_ca_topic_score_gemma":0.00017930026,"teacher_disagreement_score":0.14938708,"about_ca_system_score_codex":0.00019403025,"about_ca_system_score_gemma":0.00012773176,"threshold_uncertainty_score":0.9998165},"labels":[],"label_agreement":null},{"id":"W4409698076","doi":"10.1128/msphere.00020-25","title":"Virus species names have been standardized; virus names remain unchanged","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; National Institutes of Health; Medical Research Council Canada; Academy of Finland; Conselho Nacional de Desenvolvimento Científico e Tecnológico; National Institute of Allergy and Infectious Diseases; European Commission; Fundação de Amparo à Pesquisa do Estado de São Paulo; U.S. Department of Agriculture","keywords":"Nomenclature; Virus classification; Epithet; Biology; Virus; Taxonomy (biology); Taxon; Correct name; Virology; Linguistics; Zoology; Botany; Genetics; Genome; Philosophy","score_opus":0.032157034105016816,"score_gpt":0.2709552047490068,"score_spread":0.23879817064399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409698076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91926575,0.0074362988,0.00001549127,0.0058256565,0.00027134366,0.0005721601,0.0031548208,0.00028196056,0.063176535],"genre_scores_gemma":[0.87886906,0.0048162327,0.0003685767,0.0015956992,0.00080701755,0.0001584009,0.00026928392,0.0000052149308,0.113110505],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981233,0.00017123636,0.00024395496,0.00041752218,0.00048358756,0.00056038605],"domain_scores_gemma":[0.99914086,0.00045635257,0.000065390275,0.00010936372,0.00012414316,0.00010388859],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00037458297,0.0002388645,0.0003771178,0.000019567708,0.0005446448,0.0001654357,0.0004464247,0.00012204909,0.0021834248],"category_scores_gemma":[0.00032706276,0.00009175414,0.00014676311,0.00041245908,0.00021314206,0.00012250108,0.00032528318,0.00023314908,0.00013556507],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002096954,0.00009109054,0.004896218,0.000030401192,0.00015086924,0.00005102157,0.00021320951,0.0000031644122,0.69360673,0.0006452026,0.24015056,0.059951812],"study_design_scores_gemma":[0.0002655192,0.00014748215,0.049958203,0.000093165356,0.00002022402,0.000002053232,0.0017515167,0.00001828648,0.06313237,0.0014001293,0.8829364,0.00027465928],"about_ca_topic_score_codex":0.001187352,"about_ca_topic_score_gemma":0.028947616,"teacher_disagreement_score":0.64278585,"about_ca_system_score_codex":0.00011060734,"about_ca_system_score_gemma":0.0000284832,"threshold_uncertainty_score":0.9987287},"labels":[],"label_agreement":null},{"id":"W4409805008","doi":"10.1128/msphere.00090-25","title":"Host-specific microbiome-rumination interactions shape methane-yield phenotypes in dairy cattle","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"U.S. Department of Agriculture","keywords":"Methanogenesis; Rumen; Microbiome; Biology; Prevotella; Nitrite reductase; Food science; Fermentation; Lachnospiraceae; Bacteria; Animal science; Defaunation; Methanogen; Microbiology; Nitrate reductase; Ecology; Nitrate; Bioinformatics; Firmicutes; Genetics","score_opus":0.024335611035023606,"score_gpt":0.2552603208848406,"score_spread":0.23092470984981697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409805008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9796517,0.00072272494,0.000003592286,0.004286727,0.00030159947,0.00014079758,0.000028977383,0.000046180325,0.014817714],"genre_scores_gemma":[0.9960706,0.00011282601,0.000062226936,0.00026563284,0.0000955946,0.000025538286,0.000081987804,6.598647e-7,0.0032848965],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993297,0.000056064466,0.00016150849,0.00023474016,0.000047466987,0.00017055059],"domain_scores_gemma":[0.9995995,0.00023640733,0.000040772517,0.000045705452,0.000049104136,0.000028490831],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000066620465,0.00009696377,0.00013250142,0.000025308282,0.000084982996,0.000026401196,0.00014000018,0.00007052562,0.002174826],"category_scores_gemma":[0.000028082075,0.00004527116,0.00005571727,0.00048174214,0.000052030937,0.000105792176,0.000047843994,0.0001165826,0.00016285147],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005669239,0.00019912675,0.0052474258,0.000008753987,0.000006528185,0.0000036140057,0.000055170054,0.00000212615,0.9126961,0.0012858589,0.011828527,0.06861004],"study_design_scores_gemma":[0.00026027072,0.000089635105,0.6226031,0.000100724654,0.0000053177323,0.0000051100974,0.0008951192,0.000026681117,0.030209452,0.0009172097,0.3447149,0.0001724326],"about_ca_topic_score_codex":0.00021336699,"about_ca_topic_score_gemma":0.0013896532,"teacher_disagreement_score":0.8824867,"about_ca_system_score_codex":0.000038921095,"about_ca_system_score_gemma":0.0000071922395,"threshold_uncertainty_score":0.99873734},"labels":[],"label_agreement":null},{"id":"W4410001874","doi":"10.1128/msphere.01018-24","title":"Adaptation of the tetracycline-repressible system for modulating the expression of essential genes in <i>Cryptococcus neoformans</i>","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Cryptococcus neoformans; Biology; Adaptation (eye); Tetracycline; Gene; Microbiology; Gene expression; Genetics; Antibiotics","score_opus":0.013685741855522227,"score_gpt":0.278435150117798,"score_spread":0.2647494082622758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410001874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98749053,0.0011914225,0.0058206315,0.00019570104,0.00033035513,0.00079899165,0.000008255078,0.000013009656,0.0041510793],"genre_scores_gemma":[0.9987086,0.000018529387,0.00061619934,0.000016634682,0.000046609668,0.00009484255,0.0000016770416,0.0000048724764,0.0004920197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994212,0.000029316974,0.00028740746,0.000086702734,0.00009117713,0.0000842192],"domain_scores_gemma":[0.9994547,0.0001238098,0.00011729977,0.000194996,0.00010194524,0.000007279651],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014292487,0.00006100378,0.00016740315,0.00002352487,0.00011503244,0.0000043039054,0.00006013066,0.000041879888,0.0000072391704],"category_scores_gemma":[0.00006858671,0.000031466865,0.00008596668,0.00020573022,0.000041381118,0.00003370657,0.00004499243,0.00006723045,3.032071e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038949103,0.00027438274,0.254152,0.003485149,0.00011928137,9.796602e-7,0.0018643088,0.046108298,0.6629506,0.0025381832,0.0018561974,0.02626114],"study_design_scores_gemma":[0.0027422349,0.00013760712,0.10452364,0.0036039352,0.00018711091,0.0000037145323,0.011587396,0.05900373,0.8154251,0.00024557768,0.0024318,0.00010818754],"about_ca_topic_score_codex":0.00022834311,"about_ca_topic_score_gemma":0.00014992061,"teacher_disagreement_score":0.15247446,"about_ca_system_score_codex":0.000020291905,"about_ca_system_score_gemma":0.000038392645,"threshold_uncertainty_score":0.12831816},"labels":[],"label_agreement":null},{"id":"W4410191545","doi":"10.1128/msphere.01081-24","title":"Antibiofilm properties of 4-hydroxy-3-methyl-2-alkenylquinoline, a novel <i>Burkholderia</i> -derived alkaloid","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Biofilm; Burkholderia; Biology; Microbiology; Burkholderia cenocepacia; Bacillus subtilis; Bacteria; Antimicrobial; Biochemistry; Chemistry","score_opus":0.011306369263457404,"score_gpt":0.22396048481300704,"score_spread":0.21265411554954963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410191545","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926979,0.001981465,0.00038702704,0.00029136028,0.0004412129,0.00022465218,0.000034356577,0.000028757568,0.003913288],"genre_scores_gemma":[0.9953431,0.00016560101,0.0019776898,0.0005466152,0.00012954265,0.000005286155,0.000057373072,0.00002626431,0.0017485621],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879074,0.000039679984,0.0003504624,0.0004016803,0.000104607774,0.0003128493],"domain_scores_gemma":[0.99921465,0.000005378102,0.000120657816,0.00046882968,0.0001345433,0.00005594809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011874364,0.00022968547,0.0002980695,0.000036544527,0.000087210974,0.000035277728,0.00022034756,0.00025020627,0.000032671218],"category_scores_gemma":[0.00006836761,0.00019979502,0.00014460032,0.00017545356,0.00016320036,0.000006636586,0.00018679563,0.00009851063,0.000007475984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015509262,0.00010570857,0.00030697853,0.000099523044,0.00009446939,0.0000012558276,0.000032924494,0.00001385017,0.99594665,0.00011819486,0.0016256842,0.0014996926],"study_design_scores_gemma":[0.0007754284,0.00012753699,0.00084313547,0.00013383283,0.00003200843,0.000007032919,0.000106127525,0.0000418004,0.9631703,0.000007926633,0.034535766,0.00021912645],"about_ca_topic_score_codex":0.00013756011,"about_ca_topic_score_gemma":0.00006967877,"teacher_disagreement_score":0.032910082,"about_ca_system_score_codex":0.000009990562,"about_ca_system_score_gemma":0.00013292911,"threshold_uncertainty_score":0.8147404},"labels":[],"label_agreement":null},{"id":"W4410318034","doi":"10.1128/msphere.00913-24","title":"Metagenomic and phylogenetic analyses reveal gene-level selection constrained by bacterial phylogeny, surrounding oxalate metabolism in the gut microbiota","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Biology; Metagenomics; Phylogenetics; Phylogenetic tree; Phylum; Genetics; Gene; Microbiome; Negative selection; Oxalate; Genome; Evolutionary biology; Chemistry","score_opus":0.023362673626523684,"score_gpt":0.29750650129314155,"score_spread":0.2741438276666179,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410318034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944766,0.0040073297,0.00027427866,0.00024451222,0.00019940978,0.0003135893,0.00013547935,0.000007893781,0.00034086767],"genre_scores_gemma":[0.99655944,0.0004215739,0.0009389759,0.00059621973,0.00014400833,0.0000173945,0.00021666591,0.000016697944,0.0010890053],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860543,0.00025132362,0.0003069223,0.00043664765,0.000056012563,0.000343679],"domain_scores_gemma":[0.999558,0.000022665447,0.00009312207,0.0002386789,0.000042394073,0.00004518342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033435022,0.00022044401,0.00026867192,0.000056065877,0.00017185124,0.00008138646,0.00021029286,0.00019750479,0.000041641593],"category_scores_gemma":[0.000026728541,0.00018077312,0.00008305637,0.00022957295,0.00010937564,0.0000044445774,0.00007704574,0.0001460299,0.000003999076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060221926,0.000039971896,0.0017946212,0.000032650147,0.00010560014,0.0000013943213,0.00006489691,0.000009177438,0.9930297,0.000031988347,0.0039318334,0.00089791627],"study_design_scores_gemma":[0.0021535445,0.00012203789,0.22484389,0.00003231609,0.0002316187,0.000067366534,0.00029748163,0.000030829837,0.7254822,0.00007246144,0.04622021,0.00044604877],"about_ca_topic_score_codex":0.0002286311,"about_ca_topic_score_gemma":0.0005933745,"teacher_disagreement_score":0.26754752,"about_ca_system_score_codex":0.000027691307,"about_ca_system_score_gemma":0.00015376008,"threshold_uncertainty_score":0.7371714},"labels":[],"label_agreement":null},{"id":"W4410369688","doi":"10.1128/msphere.00167-25","title":"Correlating the oral swab microbial community with milk production metrics in Holstein dairy cows","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hendrix Genetics (Canada)","funders":"National Science Foundation of Sri Lanka; Agricultural Research Service; U.S. Department of Agriculture","keywords":"Biology; Lactation; Rumen; Animal science; Dairy cattle; Microbiome; Milk production; Veterinary medicine; Food science; Pregnancy; Medicine; Bioinformatics","score_opus":0.026876768632580206,"score_gpt":0.23915412243579026,"score_spread":0.21227735380321006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410369688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934015,0.00022243631,0.000002590472,0.0028502664,0.00014608557,0.00021255368,0.000007600236,0.000030436704,0.003126488],"genre_scores_gemma":[0.99846643,0.000021262369,0.00006194904,0.00026309644,0.000061275045,0.000014913062,0.00003934421,5.115308e-7,0.0010712014],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99919844,0.00031636664,0.00012857928,0.00013919614,0.00006286831,0.00015453815],"domain_scores_gemma":[0.9995788,0.00023345425,0.00005082844,0.00006601729,0.000052822164,0.000018131017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024536927,0.000086305256,0.00012221618,0.000010448652,0.0003508062,0.00002836307,0.0001797884,0.000060765808,0.000070498536],"category_scores_gemma":[0.00009694612,0.000027535723,0.00003006024,0.00083605974,0.00011053641,0.000065106244,0.00006474813,0.00030381838,0.000012816154],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073791324,0.0011484188,0.30990666,0.000056037265,0.00003904434,0.000018957848,0.0006199955,0.00024008939,0.44862697,0.0023822945,0.030383889,0.20583971],"study_design_scores_gemma":[0.00082218647,0.0005136917,0.9082736,0.00019502838,0.000019736606,0.000021947939,0.005966666,0.00011450021,0.013369812,0.001465997,0.068974204,0.00026264248],"about_ca_topic_score_codex":0.0011204043,"about_ca_topic_score_gemma":0.006079346,"teacher_disagreement_score":0.5983669,"about_ca_system_score_codex":0.000027707649,"about_ca_system_score_gemma":0.000009680822,"threshold_uncertainty_score":0.33924177},"labels":[],"label_agreement":null},{"id":"W4410589908","doi":"10.1128/msphere.00021-25","title":"Comparative pathogenicity of three A(H5N1) clade 2.3.4.4b HPAI viruses in blue-winged teal and transmission to domestic poultry","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; University of Manitoba; University of Saskatchewan; Canadian Food Inspection Agency; Environment and Climate Change Canada; Government of Canada","funders":"","keywords":"Biology; Genotype; Seroconversion; Influenza A virus subtype H5N1; Viral shedding; Virology; Transmission (telecommunications); Virulence; Virus; Veterinary medicine; Clade; Anas; Zoology; Medicine; Gene","score_opus":0.03845983737533155,"score_gpt":0.2908789062752012,"score_spread":0.25241906889986965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410589908","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962318,0.0007118028,0.00008468623,0.0003727736,0.000034815566,0.00023592728,0.000020751393,0.000032806027,0.002274639],"genre_scores_gemma":[0.99935585,0.000040763374,0.0002558983,0.00019253709,0.000024028335,0.00001792293,0.0000017299072,5.216935e-7,0.00011073288],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992551,0.0000639208,0.00020554596,0.00022297066,0.00009035315,0.00016209851],"domain_scores_gemma":[0.99960977,0.00022925746,0.00003891321,0.000035442084,0.00004026268,0.000046326575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000887036,0.00011875642,0.0002584154,0.000013733792,0.0001593543,0.000014683919,0.0001021569,0.000072301016,0.00011763007],"category_scores_gemma":[0.0000449279,0.000048925864,0.00004785895,0.0004418091,0.000084316714,0.000048787944,0.00007008289,0.00011661911,0.000009568312],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020714717,0.00022703686,0.43280435,0.000034800825,0.000039270693,0.0000042195234,0.00087036437,0.00007402491,0.5158512,0.00042444756,0.0007549849,0.048708163],"study_design_scores_gemma":[0.00018783937,0.00026808833,0.98571676,0.00010508509,0.000018072784,0.000001206532,0.0018527483,0.00004927041,0.00526293,0.0006675342,0.005747159,0.00012328826],"about_ca_topic_score_codex":0.0009385552,"about_ca_topic_score_gemma":0.0070293886,"teacher_disagreement_score":0.5529125,"about_ca_system_score_codex":0.000025448317,"about_ca_system_score_gemma":0.000009569779,"threshold_uncertainty_score":0.39225638},"labels":[],"label_agreement":null},{"id":"W4411027821","doi":"10.1128/msphere.00191-25","title":"The GATA-like transcription factor Gat201 determines alkaline-restricted growth in <i>Cryptococcus neoformans</i>","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Daphne Jackson Trust; Biotechnology and Biological Sciences Research Council; Carnegie Trust for the Universities of Scotland; Horizon 2020 Framework Programme; Medical Research Council Canada; Wellcome Trust","keywords":"Cryptococcus neoformans; Biology; Transcription factor; Microbiology; Fungus; Pathogen; GATA transcription factor; Gene; Virulence; Cell growth; Cell biology; Genetics; Gene expression; Promoter; Botany","score_opus":0.012795434411932864,"score_gpt":0.26685961702589966,"score_spread":0.2540641826139668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411027821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9723048,0.0018383333,0.0003577636,0.0025048053,0.0010347404,0.0008131827,0.000023232806,0.00014171052,0.020981394],"genre_scores_gemma":[0.9917072,0.0007345197,0.0000831364,0.0005164698,0.00009055703,0.00011542601,0.000013085394,0.000011466404,0.006728161],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99912465,0.000033515185,0.00028977083,0.00017194508,0.00011840255,0.00026172563],"domain_scores_gemma":[0.99951166,0.00010569187,0.00003685144,0.00019707117,0.00010491579,0.000043808577],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006492805,0.00014979126,0.00022252937,0.00006260799,0.00023637233,0.00003588739,0.000081320795,0.00008410555,0.00008749008],"category_scores_gemma":[0.000072907846,0.000095200754,0.00009670901,0.0004711723,0.00007103032,0.0000846903,0.000025007172,0.00020994901,0.000036570105],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001420468,0.0009956644,0.54535335,0.0009924072,0.0006349874,0.00016047369,0.002002189,0.00004847669,0.14309716,0.0044288007,0.21644382,0.08442222],"study_design_scores_gemma":[0.0039385543,0.00041437475,0.5575414,0.00039081118,0.00016042325,0.000024988512,0.001074579,0.0008587159,0.007326636,0.0007423012,0.42720354,0.00032372036],"about_ca_topic_score_codex":0.0003979243,"about_ca_topic_score_gemma":0.0014265308,"teacher_disagreement_score":0.21075971,"about_ca_system_score_codex":0.000064403044,"about_ca_system_score_gemma":0.000060263348,"threshold_uncertainty_score":0.38821742},"labels":[],"label_agreement":null},{"id":"W4411374563","doi":"10.1128/msphere.00243-25","title":"The ionophore resistance genes <i>narA</i> and <i>narB</i> are geographically widespread and linked to resistance to medically important antibiotics","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Coccidia and coccidiosis research","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ionophore; Antibiotics; Antibiotic resistance; Biology; Gene; Genetics; Biotechnology","score_opus":0.006431726434155436,"score_gpt":0.22652218718872857,"score_spread":0.22009046075457314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411374563","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9223302,0.018544275,0.000008839046,0.0566252,0.000121170444,0.00048420817,0.000039143357,0.000060149072,0.0017867928],"genre_scores_gemma":[0.98350954,0.007680107,0.00033755114,0.0034700728,0.00012493363,0.000022222712,0.000006170162,0.0000029323028,0.004846479],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980023,0.000115627656,0.00037639053,0.00058681064,0.00040486493,0.00051400485],"domain_scores_gemma":[0.99848926,0.00068547094,0.000074723095,0.00020235831,0.00018409255,0.0003640836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054364867,0.00021678187,0.0002736677,0.000017618711,0.0007707867,0.0003035658,0.0004996683,0.00014694352,0.00003455896],"category_scores_gemma":[0.00038831748,0.00008438696,0.00006847226,0.0009683935,0.00020532381,0.00004987178,0.0003432344,0.00022003325,0.000007938584],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011760722,0.00013949348,0.3618583,0.00013327575,0.00010713045,0.00009614239,0.00018205684,0.0000020985603,0.3083404,0.0041055935,0.11537491,0.20848453],"study_design_scores_gemma":[0.00014122865,0.00010354998,0.40363458,0.00026051112,0.000014247325,0.0000018276053,0.0004054343,0.000006911033,0.001415573,0.0014183768,0.5923877,0.00021006315],"about_ca_topic_score_codex":0.00008670722,"about_ca_topic_score_gemma":0.032225713,"teacher_disagreement_score":0.47701278,"about_ca_system_score_codex":0.00002066104,"about_ca_system_score_gemma":0.000034724933,"threshold_uncertainty_score":0.98543364},"labels":[],"label_agreement":null},{"id":"W4412110315","doi":"10.1128/msphere.00287-25","title":"The <i>Plasmodium falciparum</i> homolog of Vps16 interacts with the core members of the Vps-C tethering complex","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Tethering; Plasmodium falciparum; Core (optical fiber); Cell biology; Biology; Computational biology; Chemistry; Malaria; Computer science; Immunology; Telecommunications","score_opus":0.014010397601512493,"score_gpt":0.26856835600326656,"score_spread":0.25455795840175405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412110315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95236397,0.0016721665,0.000070171816,0.009171649,0.0002132102,0.0006475985,0.000024245219,0.000023408764,0.035813563],"genre_scores_gemma":[0.9939788,0.000025225869,0.000036782996,0.0013693272,0.000037418526,0.00003464235,0.0000032586925,0.000014378839,0.0045001674],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99908954,0.00006311077,0.00024149266,0.00015896997,0.00023370856,0.00021319273],"domain_scores_gemma":[0.9986824,0.00028875304,0.0001667886,0.00069112674,0.00012892147,0.000042002797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015623783,0.00013936785,0.0002727772,0.000010544918,0.00016202372,0.000016926504,0.00039868907,0.00004539021,0.00018029675],"category_scores_gemma":[0.00007538473,0.000055313798,0.00016414223,0.00022657518,0.00033377833,0.000022805107,0.00011934751,0.00019661672,0.0000031663023],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013675165,0.00176253,0.22614387,0.002442909,0.0057743643,0.00010396171,0.00683353,0.003908737,0.08543617,0.044194393,0.40768653,0.20203784],"study_design_scores_gemma":[0.010855005,0.0012085953,0.4794054,0.0025142778,0.0024691222,0.00007040019,0.022931883,0.008699652,0.023112398,0.001151063,0.44703415,0.0005480497],"about_ca_topic_score_codex":0.0002552475,"about_ca_topic_score_gemma":0.0005742679,"teacher_disagreement_score":0.25326154,"about_ca_system_score_codex":0.00002569575,"about_ca_system_score_gemma":0.00014529485,"threshold_uncertainty_score":0.22556312},"labels":[],"label_agreement":null},{"id":"W4412727309","doi":"10.1128/msphere.00229-25","title":"Monitoring SARS-CoV-2 variants in wastewater during periods of low clinical case surveillance in Ethiopia","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Wastewater; 2019-20 coronavirus outbreak; Virology; Medicine; Environmental science; Internal medicine; Environmental engineering; Outbreak","score_opus":0.047927733697053825,"score_gpt":0.36825790107207834,"score_spread":0.3203301673750245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412727309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966219,0.00019649504,0.000011984278,0.00008591339,0.000647136,0.00019669223,0.0000015916514,0.000052811327,0.002185498],"genre_scores_gemma":[0.99898756,0.000011713771,0.0005817861,0.00013180161,0.00011766754,0.000011576271,4.5191038e-7,0.000018089504,0.00013933805],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984829,0.0001442022,0.00066397584,0.00031119556,0.00013008551,0.00026763522],"domain_scores_gemma":[0.9993371,0.00019144986,0.0000883317,0.0002965461,0.00006228249,0.000024292689],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059573277,0.00014235769,0.00043690938,0.00012596922,0.000039620234,0.000015137133,0.00007436139,0.00018944457,0.0000164475],"category_scores_gemma":[0.00067784666,0.00013625658,0.000081149345,0.00050051464,0.00005297473,0.00006035303,0.0000712161,0.0005137157,0.000012496394],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014104081,0.00010342635,0.70299697,0.00026518805,0.000017728678,0.0018461548,0.0002435141,0.0000064765804,0.2918313,0.0000036605709,0.0000072870907,0.002537245],"study_design_scores_gemma":[0.0026871164,0.000054552882,0.45705694,0.001071762,0.000007813154,0.00032820125,0.00038089353,0.00056773575,0.5376352,0.000015364578,0.000085093,0.000109299115],"about_ca_topic_score_codex":0.0009629576,"about_ca_topic_score_gemma":0.0013886826,"teacher_disagreement_score":0.24594003,"about_ca_system_score_codex":0.000093153416,"about_ca_system_score_gemma":0.000091338276,"threshold_uncertainty_score":0.55563825},"labels":[],"label_agreement":null},{"id":"W4413051864","doi":"10.1128/msphere.00313-25","title":"Effect of temperature on microbial communities in bentonite for use in engineered barrier systems","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Soil and Unsaturated Flow","field":"Engineering","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nuclear Waste Management Organization; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bentonite; Microorganism; Thermophile; Heterotroph; Microbial population biology; Sulfate; Sulfate-reducing bacteria; Chemistry; Bacteria; Environmental chemistry; Food science; Microbiology; Biology","score_opus":0.005824614287385348,"score_gpt":0.20602990714526886,"score_spread":0.20020529285788352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413051864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99744093,0.00086906407,0.000015916608,0.0000057824354,0.0005399648,0.00034395352,0.000067614834,0.00006164479,0.00065513415],"genre_scores_gemma":[0.9993647,0.000022888999,0.0000426022,0.000014928548,0.00002268726,0.00006576185,0.000045058223,0.00001866118,0.00040274992],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99949396,0.000058036418,0.00017820108,0.00006718145,0.00004147173,0.00016115069],"domain_scores_gemma":[0.9994526,0.00032570394,0.00000998307,0.00017565346,0.000019391786,0.00001669059],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118638156,0.00013241205,0.00023549893,0.00010897167,0.000015556181,0.000032862506,0.00009950069,0.00015611383,0.000008374542],"category_scores_gemma":[0.000025764353,0.00011771895,0.000043099484,0.00023584793,0.000011826191,0.000058816753,0.000010047894,0.00024014589,0.000001563849],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073637284,0.00007487893,0.018862301,0.00433308,0.00017011225,0.00001611971,0.0017058882,0.85107416,0.108367786,0.000562976,0.009143625,0.004952692],"study_design_scores_gemma":[0.018231852,0.0010112115,0.016683625,0.010808372,0.0001235997,0.000007509736,0.002089035,0.49092144,0.42266312,0.00003935342,0.035963394,0.0014574758],"about_ca_topic_score_codex":0.00029363332,"about_ca_topic_score_gemma":0.0006467148,"teacher_disagreement_score":0.36015272,"about_ca_system_score_codex":0.00006003713,"about_ca_system_score_gemma":0.000010308055,"threshold_uncertainty_score":0.48004395},"labels":[],"label_agreement":null},{"id":"W4413354557","doi":"10.1128/msphere.00927-24","title":"Fomite workshop recommendations addressing the role of surfaces in virus transmission in the built environment","year":2025,"lang":"en","type":"review","venue":"mSphere","topic":"Infection Control and Ventilation","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Public Health Agency of Canada","funders":"","keywords":"Environmental health; Transmission (telecommunications); Environmental science; Sars virus; Airborne transmission; Coronavirus disease 2019 (COVID-19); Medicine; Computer science; Telecommunications","score_opus":0.06883620526481941,"score_gpt":0.3615063165580198,"score_spread":0.29267011129320036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413354557","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007103783,0.9941565,0.00042322656,0.00069838145,0.00007786148,0.000968569,0.00001160015,0.000007816469,0.0035850098],"genre_scores_gemma":[0.003098392,0.995652,0.00008698229,0.000066135006,0.00005054908,0.00011943778,0.000082283164,0.0000115342,0.0008326818],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987007,0.00037196724,0.0004908193,0.00016668042,0.00014769226,0.00012218588],"domain_scores_gemma":[0.9990598,0.00047209967,0.00018126803,0.00026012596,0.000010762021,0.00001593021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005290503,0.00015622555,0.00054608047,0.00007744401,0.0000705513,0.000016790109,0.00012146692,0.00016759668,0.00049126876],"category_scores_gemma":[0.000040744788,0.000081879414,0.00020789816,0.00031110947,0.000026855845,0.000038748403,0.000020370115,0.000435839,0.0000096814265],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014388664,0.00010176963,0.00015825163,0.0013783803,0.00002791486,0.000001416554,0.0002665933,0.000071697,0.0000056279696,0.000026988098,0.00022248685,0.9977245],"study_design_scores_gemma":[0.0003075178,0.000017318756,0.0005501967,0.015744643,0.00030889545,0.0000041274507,0.00025110613,0.0003514594,0.0000058192363,0.00006996689,0.9823192,0.00006977948],"about_ca_topic_score_codex":0.00012974477,"about_ca_topic_score_gemma":0.00027365235,"teacher_disagreement_score":0.9976547,"about_ca_system_score_codex":0.00007821039,"about_ca_system_score_gemma":0.00010219261,"threshold_uncertainty_score":0.53790486},"labels":[],"label_agreement":null},{"id":"W4413500350","doi":"10.1128/msphere.00308-25","title":"Unc-51-like kinase 1 (ULK1) regulates bacterial ubiquitylation and p62 recruitment during xenophagic clearance of <i>Listeria monocyt</i> ogenes","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"ULK1; Autophagy; Cell biology; Intracellular parasite; Biology; Intracellular; Signal transducing adaptor protein; Ubiquitin; Listeria monocytogenes; Protein kinase A; Kinase; Phosphorylation; Microbiology; Bacteria; Biochemistry; Genetics; AMPK; Gene","score_opus":0.022649136713078867,"score_gpt":0.29486478660202375,"score_spread":0.27221564988894487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413500350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923494,0.005209474,0.0000199508,0.00023388067,0.00035483003,0.00056671904,0.000017739647,0.00006296571,0.0011850809],"genre_scores_gemma":[0.9956198,0.00038385784,0.00033684404,0.00023886535,0.00013645965,0.00004624267,0.000033514647,0.000020243646,0.0031842133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990463,0.000047443224,0.00029847477,0.00028308204,0.0001382542,0.00018641402],"domain_scores_gemma":[0.9993895,0.000025162282,0.00010699663,0.00033454315,0.00006254957,0.00008123875],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008636837,0.00017015522,0.00032115457,0.000045399847,0.00008868212,0.000023844948,0.000072878254,0.00010444113,0.00041047137],"category_scores_gemma":[0.000013433866,0.00015571204,0.00007405304,0.00016081714,0.000081605474,0.0000928058,0.00006105841,0.00007142556,0.000009246309],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004928528,0.00042239347,0.0116811525,0.0012982615,0.00037398376,0.00009706177,0.0006289058,0.00004160653,0.9432293,0.0006188569,0.00071863126,0.03596129],"study_design_scores_gemma":[0.00472868,0.00026902504,0.35806772,0.00067507185,0.00021371832,0.000018613091,0.00017089205,0.00015080611,0.62644094,0.001202741,0.007846824,0.00021499695],"about_ca_topic_score_codex":0.000037651178,"about_ca_topic_score_gemma":0.000014934895,"teacher_disagreement_score":0.34638655,"about_ca_system_score_codex":0.00005877058,"about_ca_system_score_gemma":0.00006769994,"threshold_uncertainty_score":0.63497525},"labels":[],"label_agreement":null},{"id":"W4413500605","doi":"10.1128/msphere.00188-25","title":"Functional insights into <i>Streptomyces</i> isolates containing both clavulanic acid-like and carbapenem biosynthetic gene clusters","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Clavulanic acid; Streptomyces clavuligerus; Streptomyces; Microbiology; Antimicrobial; Antibiotics; Carbapenem; Biology; Bacteria; Streptomycetaceae; Actinobacteria; Gene; Biochemistry; Actinomycetales; Genetics; 16S ribosomal RNA; Amoxicillin","score_opus":0.00802898244446281,"score_gpt":0.2218168619671707,"score_spread":0.2137878795227079,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413500605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98158294,0.010355326,0.00008106204,0.0043217638,0.0005360193,0.00032754577,0.000004674556,0.00010220412,0.0026884452],"genre_scores_gemma":[0.99201155,0.00028664118,0.00067656167,0.0032176978,0.00017790735,0.0000025815189,0.00003234108,0.000019650459,0.0035750556],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883634,0.000043096243,0.00026878613,0.00047672275,0.0001254947,0.00024956508],"domain_scores_gemma":[0.9993854,0.00007049305,0.00006944025,0.0002837689,0.00008408617,0.000106824154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009769393,0.00023130726,0.000345995,0.000077868404,0.00019494329,0.00005246819,0.00008636899,0.00017395658,0.00038775537],"category_scores_gemma":[0.00006362975,0.00017200141,0.00008648086,0.00025379873,0.00011663355,0.00008586801,0.000105692576,0.00024173595,0.000035313973],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004804255,0.00007288785,0.0025910635,0.000223468,0.0002285862,0.000026625348,0.00030853495,0.0000038903154,0.9640361,0.00015624058,0.012501098,0.01937106],"study_design_scores_gemma":[0.0031087054,0.00047796877,0.009050592,0.0007405691,0.0005622423,0.00014047038,0.0011078423,0.0005319053,0.78557044,0.00049235625,0.19760065,0.0006162541],"about_ca_topic_score_codex":0.00016683976,"about_ca_topic_score_gemma":0.00021046186,"teacher_disagreement_score":0.18509954,"about_ca_system_score_codex":0.000083257706,"about_ca_system_score_gemma":0.000117571246,"threshold_uncertainty_score":0.70140135},"labels":[],"label_agreement":null},{"id":"W4413500650","doi":"10.1128/msphere.00421-25","title":"Proteomic and metabolomic analysis reveals new insights into quaternary amine metabolism in <i>Citrobacter amalonaticus</i> CJ25","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Regional Laboratory Medicine Program","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Institutes of Health","keywords":"Choline; Carnitine; Betaine; Biochemistry; Gut flora; Biology; Metabolomics; Enzyme; Metabolism; Chemistry; Microbiology; Bioinformatics","score_opus":0.004381567815699803,"score_gpt":0.24242900353859165,"score_spread":0.23804743572289183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413500650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905567,0.0070798593,0.00079904,0.00062555965,0.0001031286,0.00034022107,0.000006822957,0.000011984502,0.00047669274],"genre_scores_gemma":[0.9893047,0.0007522099,0.0027445056,0.0011566042,0.00009683117,0.000026693097,0.000102468555,0.00001555187,0.0058004367],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99873024,0.00011113316,0.0003522314,0.0004758074,0.000066428554,0.0002641681],"domain_scores_gemma":[0.99940044,0.0000086409245,0.000087921406,0.00036328167,0.000040861458,0.00009883917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012897517,0.00021029837,0.00041933174,0.00015025806,0.00006002997,0.000037259968,0.0001817335,0.00019737794,0.000041136118],"category_scores_gemma":[0.000026827458,0.00018392972,0.000112204594,0.00044807032,0.000050901264,0.000008358679,0.00014694808,0.00014228642,0.000010365128],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000107207554,0.000053341613,0.038607277,0.00006835476,0.00037307627,0.0000052296145,0.00016943607,0.000028083932,0.9557439,0.00020943828,0.003219086,0.0014155745],"study_design_scores_gemma":[0.002724912,0.00011125727,0.7654119,0.00007519126,0.0007075938,0.000006304845,0.00009983723,0.00014167339,0.1562533,0.0024829998,0.07143168,0.00055337185],"about_ca_topic_score_codex":0.001082296,"about_ca_topic_score_gemma":0.0018725796,"teacher_disagreement_score":0.79949063,"about_ca_system_score_codex":0.000024217981,"about_ca_system_score_gemma":0.00013870456,"threshold_uncertainty_score":0.75004363},"labels":[],"label_agreement":null},{"id":"W4413775499","doi":"10.1128/msphere.00441-25","title":"Establishing an <i>ex vivo</i> porcine skin model to investigate the effects of broad-spectrum antiseptic on viable skin microbial communities","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Discovery Centre","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Antiseptic; Ex vivo; Microbiology; Biology; Antimicrobial; Microbiome; Pseudomonas aeruginosa; Bioburden; In vivo; Microbial population biology; Bacteria; Medicine; Biotechnology; Pathology; Bioinformatics","score_opus":0.010059267402544899,"score_gpt":0.24722265063293394,"score_spread":0.23716338323038905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413775499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962706,0.000087399516,0.0008228572,0.0004887523,0.00024436365,0.00031423493,0.000020783375,0.000023110137,0.0017279047],"genre_scores_gemma":[0.9941054,0.000017661578,0.00077995076,0.0017134178,0.00008010541,0.000014632756,0.000080616235,0.000018878789,0.0031893437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990432,0.0001695072,0.00024983526,0.00024201091,0.00008395488,0.00021144286],"domain_scores_gemma":[0.9990009,0.00006710996,0.00008059712,0.00071211543,0.00007445592,0.00006478543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002550491,0.0001533248,0.00017544947,0.000034176584,0.00017253966,0.00011494714,0.0004202252,0.00010244404,0.000029904551],"category_scores_gemma":[0.00021884097,0.00013168305,0.000063584914,0.00017876975,0.00010281068,0.000012310525,0.00017603108,0.00012966906,0.000006077926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051074072,0.000094863746,0.0007414184,0.000117286014,0.000023198096,4.7193856e-7,0.00046968434,0.0013415455,0.9904898,0.00033027196,0.0054543684,0.0008860527],"study_design_scores_gemma":[0.00047274138,0.00024026293,0.0021618567,0.00018454903,0.000028233113,0.0000017405548,0.00041749788,0.0022797573,0.98958856,0.00045683436,0.003986018,0.00018194999],"about_ca_topic_score_codex":0.0008118576,"about_ca_topic_score_gemma":0.0019598713,"teacher_disagreement_score":0.0021652014,"about_ca_system_score_codex":0.000018406514,"about_ca_system_score_gemma":0.000086355176,"threshold_uncertainty_score":0.5369879},"labels":[],"label_agreement":null},{"id":"W4414062438","doi":"10.1128/msphere.00277-25","title":"GacA regulates symbiosis and mediates lifestyle transitions in <i>Pseudomonas</i>","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Natural Resources Canada; U.S. Department of Agriculture","keywords":"Gene; Virulence; Genome; Adaptation (eye); Horizontal gene transfer; Regulator; Bacteria; Neisseria; Quorum sensing","score_opus":0.007104791337893587,"score_gpt":0.20419198962315188,"score_spread":0.19708719828525828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414062438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910295,0.0005293427,7.7768914e-7,0.0041639186,0.00007041012,0.0000697737,0.000051757732,0.00003140149,0.004053132],"genre_scores_gemma":[0.99848765,0.00017439686,0.000044790333,0.00034235392,0.000023480772,0.0000100763955,0.000042928034,3.502198e-7,0.0008739842],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99954337,0.000043155393,0.0001210382,0.00012775748,0.000035370686,0.00012928706],"domain_scores_gemma":[0.99977267,0.00012851034,0.00001847943,0.000032850665,0.00001878955,0.00002868392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006942517,0.000073167736,0.00009974264,0.0000094183015,0.00013482757,0.000044416887,0.00008497252,0.00006198438,0.00034097504],"category_scores_gemma":[0.000019352183,0.000030904008,0.000031911823,0.00023460767,0.00003878501,0.000098265285,0.00002810497,0.000107504544,0.00001410809],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024197408,0.0001522351,0.036929756,0.000012828288,0.000016977825,0.0000054412726,0.00014282682,0.0000024732335,0.9260265,0.00029149334,0.007167078,0.029228143],"study_design_scores_gemma":[0.00037888676,0.000118649645,0.8519815,0.00028904047,0.000027937907,0.000029115597,0.0027687454,0.00014560219,0.06437394,0.0020817819,0.077496685,0.0003081065],"about_ca_topic_score_codex":0.0005642362,"about_ca_topic_score_gemma":0.004978891,"teacher_disagreement_score":0.8616526,"about_ca_system_score_codex":0.000011364586,"about_ca_system_score_gemma":0.000004801006,"threshold_uncertainty_score":0.37334377},"labels":[],"label_agreement":null},{"id":"W4414168152","doi":"10.1128/msphere.00314-25","title":"Abundance of <i>Bifidobacterium</i> species in the infant gut microbiota and associations with maternal-infant characteristics in Dhaka, Bangladesh","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Institute for Clinical Evaluative Sciences; SickKids Foundation; Hospital for Sick Children","funders":"University of California, San Diego; International Centre for Diarrhoeal Disease Research, Bangladesh; Hospital for Sick Children; Bill and Melinda Gates Foundation","keywords":"Abundance (ecology); Colonization; Gut flora; Subspecies; Feces; Relative species abundance","score_opus":0.004873329126816233,"score_gpt":0.22611625809480643,"score_spread":0.2212429289679902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414168152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99729556,0.00045390837,0.000024457922,0.0005460366,0.00005821556,0.00020626829,0.00013450961,0.0000030966078,0.0012779483],"genre_scores_gemma":[0.9979354,0.000373909,0.00020436505,0.000618868,0.000032466272,0.000010980944,0.00009068899,0.000008102414,0.0007251983],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992373,0.00005949589,0.00026416965,0.00019475316,0.000050474562,0.00019383673],"domain_scores_gemma":[0.99958664,0.000017904526,0.00010963001,0.00022458003,0.000043029242,0.000018210607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016902777,0.00011563371,0.00019511417,0.000031876672,0.00004162891,0.000032659005,0.00015617993,0.0001028273,0.000017590357],"category_scores_gemma":[0.000020237847,0.00008590021,0.000024903251,0.00015304805,0.000078876044,0.000004211655,0.000060066985,0.000120712284,0.000001448357],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038986356,0.000044901928,0.44541782,0.00006825808,0.000013678581,0.0000034759462,0.00022083326,0.0000011375431,0.5528087,0.000100483994,0.0011400596,0.00014164679],"study_design_scores_gemma":[0.0004980893,0.00006449462,0.96415174,0.00011466933,0.000009192679,0.00000792777,0.00019234758,0.0000025787913,0.014768765,0.000012006232,0.020084858,0.00009330199],"about_ca_topic_score_codex":0.00033792006,"about_ca_topic_score_gemma":0.004217818,"teacher_disagreement_score":0.53804,"about_ca_system_score_codex":0.00001995471,"about_ca_system_score_gemma":0.00010074956,"threshold_uncertainty_score":0.3502909},"labels":[],"label_agreement":null},{"id":"W4414284840","doi":"10.1128/msphere.00423-25","title":"A nitric oxide-sensing two-component system regulates a range of infection-related phenotypes in <i>Burkholderia pseudomallei</i>","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council Canada; Leverhulme Trust","keywords":"Autophosphorylation; Biofilm; Virulence; Regulator; Histidine kinase; Phenotype; Phosphorylation; Signal transduction; Nitric oxide","score_opus":0.008808435402788148,"score_gpt":0.24698849317668414,"score_spread":0.238180057773896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414284840","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798411,0.0014117388,0.00034383326,0.00017711645,0.0004462762,0.0006552367,0.000003319512,0.00020167403,0.016919704],"genre_scores_gemma":[0.99792325,0.00008775281,0.0009227466,0.00008237821,0.000054756314,0.000029102872,0.000008906317,0.000030269983,0.00086085655],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99843895,0.00010001391,0.0006576918,0.0003322813,0.0001799069,0.00029114602],"domain_scores_gemma":[0.9990783,0.000098454606,0.00016358618,0.0004117061,0.0001696461,0.00007835911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002910492,0.0002288926,0.0006093898,0.00037135716,0.00009421321,0.000022269976,0.000055937893,0.00018920905,0.00009811442],"category_scores_gemma":[0.00007685031,0.00021093967,0.0001938287,0.0014888393,0.00007293204,0.0000804483,0.00005290764,0.00026019805,0.000030157806],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001066261,0.0015609247,0.49430287,0.0044494183,0.0012045735,0.00022730317,0.0006869619,0.0021138894,0.451333,0.009047994,0.003820116,0.030186681],"study_design_scores_gemma":[0.016348002,0.00024924224,0.90394104,0.007344413,0.0009524234,0.0002875704,0.0011171291,0.008783449,0.054437213,0.00048088364,0.005396514,0.0006621429],"about_ca_topic_score_codex":0.0035075748,"about_ca_topic_score_gemma":0.0002970584,"teacher_disagreement_score":0.40963814,"about_ca_system_score_codex":0.00022635049,"about_ca_system_score_gemma":0.0001264896,"threshold_uncertainty_score":0.86018705},"labels":[],"label_agreement":null},{"id":"W4414385430","doi":"10.1128/msphere.00571-25","title":"Rapid, accurate, and reproducible <i>de novo</i> prediction of resistance to antituberculars","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; European Commission; Engineering and Physical Sciences Research Council; China Scholarship Council; U.S. Department of Energy","keywords":"Flexibility (engineering); Rifampicin; Drug resistance; Tuberculosis; Mycobacterium tuberculosis; Antibiotic resistance; Mutation; Resistance (ecology)","score_opus":0.025027517385612593,"score_gpt":0.32091258827441393,"score_spread":0.29588507088880134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414385430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9441185,0.0051170755,0.0004910962,0.015115751,0.00010345234,0.0004073507,0.000026421698,0.000049538612,0.034570813],"genre_scores_gemma":[0.9851895,0.0013183639,0.002322406,0.0021372724,0.00007289423,0.000031404637,0.00001461437,0.000010262889,0.008903261],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99897677,0.000080710415,0.00024076161,0.000344173,0.00010892557,0.00024867794],"domain_scores_gemma":[0.9991985,0.00008835383,0.000030594074,0.00044744837,0.00011182709,0.00012330033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006201667,0.00008133808,0.00027054158,0.000066164175,0.00004694009,0.0000069508183,0.00006425246,0.00008618579,0.00009593997],"category_scores_gemma":[0.001366423,0.00007054624,0.00004323791,0.0003789196,0.000070237016,0.000046997873,0.000054699634,0.00014264372,0.00001155029],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011851909,0.00018104113,0.38134173,0.0009415432,0.00022701436,0.00004868547,0.00021864373,0.00005904304,0.15030792,0.0015777701,0.44988146,0.014029936],"study_design_scores_gemma":[0.0014880163,0.00034193715,0.53752476,0.00055213424,0.00008349774,0.000044020733,0.0002697294,0.00019811594,0.037059147,0.00059777655,0.42173138,0.000109456094],"about_ca_topic_score_codex":0.00009419785,"about_ca_topic_score_gemma":0.00011106055,"teacher_disagreement_score":0.15618305,"about_ca_system_score_codex":0.000046018937,"about_ca_system_score_gemma":0.00011590713,"threshold_uncertainty_score":0.2876792},"labels":[],"label_agreement":null},{"id":"W4414410029","doi":"10.1128/msphere.00453-25","title":"CRISPR adaptation in <i>Streptococcus thermophilus</i> benefits from phage environmental DNA","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Health Sciences","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"CRISPR; Context (archaeology); Bacteria; DNA; Genome; Acquired immune system; Immune system; Adaptation (eye); Cas9","score_opus":0.004797674833868477,"score_gpt":0.24646866418302701,"score_spread":0.24167098934915854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414410029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98817736,0.004509836,0.003930335,0.000068644746,0.0001393637,0.00015260483,0.00004826729,0.000011953403,0.002961613],"genre_scores_gemma":[0.99845463,0.00018142565,0.00032660077,0.00017197404,0.000081202415,0.000028565146,0.00016625265,0.000013194422,0.0005761327],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993897,0.000016355085,0.00013584718,0.000251693,0.000060079663,0.00014630253],"domain_scores_gemma":[0.999721,0.000007792652,0.000020191244,0.0002177623,0.000004407329,0.000028842775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000034048102,0.0001153367,0.000087910405,0.000016991073,0.000026351821,0.000012345666,0.00010808248,0.000101329046,0.000119105236],"category_scores_gemma":[0.000008789619,0.00012258875,0.000045650075,0.00005182556,0.000017868104,0.000002368416,0.0000615854,0.000062387226,0.000015766775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032803542,0.000066641805,0.011634515,0.000009407392,0.00003386648,0.0000043216282,0.0001166385,0.0068931575,0.9383555,0.000033613233,0.0011508615,0.041668683],"study_design_scores_gemma":[0.0011617776,0.000069728754,0.13255662,0.000044583277,0.000021402802,9.4269507e-7,0.0005445807,0.0014090153,0.838246,0.00016160368,0.025511071,0.000272673],"about_ca_topic_score_codex":0.000058120597,"about_ca_topic_score_gemma":0.00025048622,"teacher_disagreement_score":0.1209221,"about_ca_system_score_codex":0.000016599719,"about_ca_system_score_gemma":0.000016232432,"threshold_uncertainty_score":0.49990243},"labels":[],"label_agreement":null},{"id":"W4414754282","doi":"10.1128/msphere.00318-25","title":"Antifungal, antibacterial, and anti-inflammatory activity of glycerol dithionomonolaurate, an analog of glycerol monolaurate","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"","keywords":"Glycerol; Antimicrobial; Exotoxin; Staphylococcus aureus; Bacteria; Microbiome; In vitro; Antimicrobial peptides","score_opus":0.008110277759429121,"score_gpt":0.23059163953327158,"score_spread":0.22248136177384245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414754282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965523,0.0008083062,0.0001805016,0.00007055991,0.00050945196,0.00026080906,0.00016554508,0.000058080237,0.0013944705],"genre_scores_gemma":[0.99846643,0.00036726214,0.000100114616,0.000041759642,0.000027511674,0.000004863371,0.00003272145,0.000020489295,0.00093883096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985587,0.00020715293,0.0004767806,0.00039250217,0.000034605855,0.00033028217],"domain_scores_gemma":[0.99895823,0.00009208204,0.00037966628,0.0004251982,0.000116336145,0.000028469447],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018749038,0.00027971913,0.00070179615,0.00012095947,0.00017851888,0.000031516112,0.00024700369,0.00034489678,0.00038379634],"category_scores_gemma":[0.000027460808,0.00025868107,0.00012084279,0.00018844224,0.0005388948,0.00044321196,0.00014734175,0.00026786842,0.000013902917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058574654,0.0002168887,0.028427966,0.0001970211,0.0002681864,0.0000036235353,0.00014999959,0.000012281589,0.96074164,0.00046343383,0.0011354018,0.0077978075],"study_design_scores_gemma":[0.0012995742,0.00024245567,0.14617808,0.00017271694,0.000090534166,0.0000140587445,0.00037317962,0.000022217344,0.8499592,0.000082109305,0.0013277425,0.00023811],"about_ca_topic_score_codex":0.0003612577,"about_ca_topic_score_gemma":0.00012790239,"teacher_disagreement_score":0.117750116,"about_ca_system_score_codex":0.0000204186,"about_ca_system_score_gemma":0.00012533547,"threshold_uncertainty_score":0.9999865},"labels":[],"label_agreement":null},{"id":"W4414994559","doi":"10.1128/msphere.00535-25","title":"Dietary modulation of the rumen microbiome drives the expression of metabolic and methanogenic pathways in <i>Bos indicus</i>","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Rumen; Microbiome; Methane emissions; Metagenomics; Livestock; Methanogenesis; Microbial metabolism; Sustainability; Metabolism","score_opus":0.013904537827588735,"score_gpt":0.2143983441523727,"score_spread":0.20049380632478395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414994559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967359,0.0018652942,4.3109395e-7,0.0007187552,0.00003867104,0.0001552428,0.000027164011,0.000003995829,0.00045455695],"genre_scores_gemma":[0.9995953,0.00019038701,0.000019620133,0.000074177755,0.000013435416,0.000008773145,0.000007948903,2.7883735e-7,0.00009008557],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99947983,0.00013535946,0.00014620721,0.00010944811,0.000049708677,0.00007945245],"domain_scores_gemma":[0.999728,0.0001115567,0.00008025584,0.000049369595,0.000020832495,0.000009980042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008535835,0.000058952788,0.00012941436,0.0000072026783,0.00006157332,0.000004245558,0.00014116087,0.000048305723,0.000035546665],"category_scores_gemma":[0.000014019682,0.000016292788,0.000051294417,0.00028357885,0.00011881777,0.000038305105,0.000094303236,0.00005147059,6.467747e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001909074,0.00004708772,0.022727575,0.000008471831,0.0000040508558,1.1162424e-7,0.000086534696,0.00000471784,0.96664983,0.0003625613,0.00008818628,0.010001802],"study_design_scores_gemma":[0.00011241248,0.000025826761,0.68040437,0.000044573448,0.0000052165556,4.648666e-7,0.00025818573,0.000009797167,0.3156303,0.0020668702,0.001414423,0.000027589067],"about_ca_topic_score_codex":0.00009433406,"about_ca_topic_score_gemma":0.00010334333,"teacher_disagreement_score":0.65767676,"about_ca_system_score_codex":0.0000024514118,"about_ca_system_score_gemma":0.000004830194,"threshold_uncertainty_score":0.06644006},"labels":[],"label_agreement":null},{"id":"W4415114124","doi":"10.1128/msphere.00348-25","title":"Metagenomic insights into soil microbial diversity and antibiotic resistance genes in pristine karst tiankeng ecosystems","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Natural Science Foundation of China","keywords":"Karst; Metagenomics; Edaphic; Microorganism; Microbial population biology; Ecosystem; Soil microbiology; Acidobacteria","score_opus":0.0068243247060204015,"score_gpt":0.1968839771054969,"score_spread":0.1900596523994765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415114124","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99292046,0.0009358053,0.000016093732,0.00013277832,0.00016085166,0.00014738794,0.0000030546573,0.000016817778,0.0056667496],"genre_scores_gemma":[0.99748665,0.00011445185,0.0001932487,0.00020831315,0.000012739471,8.5112663e-7,0.000009855432,0.0000045054217,0.0019693982],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991668,0.00021936929,0.00015926722,0.0002457278,0.000033437405,0.00017542896],"domain_scores_gemma":[0.9996138,0.00006979453,0.0000512341,0.0002288284,0.000004473575,0.0000318598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014919105,0.00011467716,0.0002061053,0.000027216802,0.0006217523,0.000010500033,0.0002755269,0.00011465982,0.0006087749],"category_scores_gemma":[0.000015871394,0.00011482582,0.000026992175,0.00017290276,0.00020085386,0.00007629986,0.0012644175,0.00018033705,0.00010014959],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017906273,0.00018690003,0.533205,0.00021388431,0.000053120046,0.000034196437,0.003868654,0.00041660224,0.44715,0.0005296317,0.012962998,0.0011999859],"study_design_scores_gemma":[0.0015306064,0.00007932712,0.8817992,0.00014061789,0.000059306258,0.0000050650083,0.0004321727,0.00036251414,0.015655013,0.0042752516,0.09514934,0.0005115471],"about_ca_topic_score_codex":0.0031966716,"about_ca_topic_score_gemma":0.27000076,"teacher_disagreement_score":0.43149498,"about_ca_system_score_codex":0.00013049421,"about_ca_system_score_gemma":0.000012503232,"threshold_uncertainty_score":0.74331987},"labels":[],"label_agreement":null}]}