{"meta":{"query_hash":"52aa3c175297","filters":{"venue":"npj Genomic Medicine"},"cohort_total":106,"direct_labels_cover":0,"predictions_cover":106,"exported":106,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/52aa3c175297","api":"https://metacan.xera.ac/api/v1/cohort?venue=npj+Genomic+Medicine"},"results":[{"id":"W2233252933","doi":"10.1038/npjgenmed.2015.12","title":"Whole-genome sequencing expands diagnostic utility and improves clinical management in paediatric medicine","year":2016,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":377,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Institute for Clinical Evaluative Sciences; University of Toronto; SickKids Foundation; Hospital for Sick Children; Public Health Ontario","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; University of Toronto; Genome Canada; GlaxoSmithKline","keywords":"Indel; Whole genome sequencing; Copy-number variation; Genetic testing; Genetics; Medical genetics; DNA sequencing; Missense mutation; Human genetics; Biology; Medicine; Mutation; Gene; Bioinformatics; Genome; Computational biology; Single-nucleotide polymorphism; Genotype","score_opus":0.02208723545716237,"score_gpt":0.2907988927803203,"score_spread":0.26871165732315794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2233252933","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6361877,0.096930325,0.18508539,0.025210915,0.0011854146,0.00051989546,0.007865512,0.0043393928,0.042675387],"genre_scores_gemma":[0.8457091,0.032098033,0.11059509,0.0038205378,0.0013323115,0.00019415046,0.0032768624,0.0004625407,0.002511309],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99632734,0.0022277448,0.00023152312,0.0005085312,0.00058496866,0.00011993863],"domain_scores_gemma":[0.9896445,0.0066119214,0.001077323,0.0008949192,0.0013632777,0.00040799574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006245996,0.0006943832,0.0008306235,0.0019527754,0.00024113437,0.0014213205,0.00063576695,0.0011481866,0.0055545983],"category_scores_gemma":[0.018878138,0.0003760321,0.00047715794,0.0014196166,0.0007538652,0.0015573151,0.0012311272,0.0009315569,0.0017656343],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064957625,0.0001989185,0.30234972,0.0009713222,0.0001829204,0.0019816228,0.0004423264,0.0020830452,0.015521106,0.0028926714,0.014830848,0.65789586],"study_design_scores_gemma":[0.00015529864,0.00094675063,0.8292538,0.0014157407,0.00040809158,0.025699813,0.0007292472,0.014847835,0.013395978,0.015343341,0.09767088,0.00013321429],"about_ca_topic_score_codex":0.00081068435,"about_ca_topic_score_gemma":0.0009027352,"teacher_disagreement_score":0.006245996,"about_ca_system_score_codex":0.00046017932,"about_ca_system_score_gemma":0.00072516117,"threshold_uncertainty_score":0.033032417},"labels":[],"label_agreement":null},{"id":"W2238050425","doi":"10.1038/npjgenmed.2015.1","title":"Genomic medicine goes mainstream","year":2016,"lang":"en","type":"editorial","venue":"npj Genomic Medicine","topic":"Prenatal Screening and Diagnostics","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children; SickKids Foundation","funders":"","keywords":"Mainstream; Genomic medicine; Biology; Computational biology; Political science; Law","score_opus":0.014350012472041816,"score_gpt":0.28743302794943687,"score_spread":0.27308301547739505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2238050425","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000137452125,0.008734661,0.000077297984,0.15932855,0.8303541,0.00000663635,0.00001340733,0.00002783582,0.0014438032],"genre_scores_gemma":[0.00023601281,0.00425573,0.0000830897,0.13757196,0.853753,0.000013557115,0.00001028338,0.000027735909,0.004048739],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.983691,0.0046230406,0.0017076427,0.0019482541,0.0068955105,0.001134557],"domain_scores_gemma":[0.9370468,0.03680373,0.0032683364,0.00218613,0.011974275,0.008720645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.015984565,0.0038270024,0.0047855536,0.0046893945,0.0070395228,0.017652987,0.00451742,0.050749566,0.0152555825],"category_scores_gemma":[0.073322274,0.0018008753,0.002927951,0.0022897895,0.011523043,0.013844918,0.0069851233,0.06818924,0.010629194],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010646085,0.0000062047743,0.000016569136,0.00014706519,0.000012898076,0.00009261541,0.000035900706,0.00001179821,0.000017293689,0.001123516,0.9938915,0.0046339408],"study_design_scores_gemma":[0.000045165925,0.0000149627485,0.00012070177,0.00079125847,0.000037006153,0.00022425756,0.00010649639,0.00005390421,0.000030340789,0.0041624266,0.9943896,0.000023995633],"about_ca_topic_score_codex":0.003524301,"about_ca_topic_score_gemma":0.010770257,"teacher_disagreement_score":0.050749566,"about_ca_system_score_codex":0.0067180307,"about_ca_system_score_gemma":0.008011172,"threshold_uncertainty_score":0.08453548},"labels":[],"label_agreement":null},{"id":"W2484001856","doi":"10.1038/npjgenmed.2016.27","title":"Genome-wide characteristics of de novo mutations in autism","year":2016,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":238,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Addiction and Mental Health; Memorial University of Newfoundland; Holland Bloorview Kids Rehabilitation Hospital; University of Alberta; Ontario Genomics; SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; U.S. Public Health Service; GlaxoSmithKline; Children's Hospital Foundation; Ontario Genomics; Stollery Children’s Hospital Foundation; National Alliance for Research on Schizophrenia and Depression; Ontario Genomics Institute; Hospital for Sick Children; Vetenskapsrådet; Ontario Brain Institute; Sick Kids Foundation; Genome Canada; Government of Ontario; University of Toronto; Autism Speaks","keywords":"Genetics; Biology; Germline; DNA methylation; Epigenetics; Gene; Genome","score_opus":0.008690152974202966,"score_gpt":0.22564879279087058,"score_spread":0.2169586398166676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2484001856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988482,0.00021608185,0.00019731316,0.0000091092625,0.0000025622646,0.0000029231078,0.0004702829,0.000015026915,0.00023841177],"genre_scores_gemma":[0.9991166,0.000065857,0.00014650388,0.000010179243,0.000003024399,0.0000034666239,0.0005117039,0.0000068805825,0.0001358456],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99973017,0.000026936585,0.00002869562,0.00013094638,0.00005544799,0.000027768541],"domain_scores_gemma":[0.9994752,0.00016267777,0.00020212239,0.00003670879,0.000047847112,0.00007544548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020862314,0.00019214248,0.00027297944,0.0012024645,0.00017249308,0.00033939368,0.0001777509,0.00037676105,0.0018109357],"category_scores_gemma":[0.0008890769,0.00013386003,0.00020694885,0.0005476254,0.00019085374,0.00010565582,0.0003008592,0.0002069526,0.0002315877],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003141349,0.000023654538,0.935666,0.000038099006,0.00014862603,0.0010035726,0.0001324191,0.00017000939,0.056425344,0.000054248947,0.0001866919,0.0058371136],"study_design_scores_gemma":[0.00000335949,0.000050888553,0.99573696,0.0000027040846,0.000033360382,0.0023150458,0.000046753164,0.00024936843,0.0012167488,0.000042455442,0.0002990367,0.0000032932046],"about_ca_topic_score_codex":0.0007179566,"about_ca_topic_score_gemma":0.00091729156,"teacher_disagreement_score":0.0018109357,"about_ca_system_score_codex":0.00008502401,"about_ca_system_score_gemma":0.000051549712,"threshold_uncertainty_score":0.006058216},"labels":[],"label_agreement":null},{"id":"W2518224182","doi":"10.1038/npjgenmed.2016.24","title":"Sharing health-related data: a privacy test?","year":2016,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Ethics in Clinical Research","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada; Wellcome Trust; Genome Canada","keywords":"Data sharing; Information privacy; Internet privacy; Data Protection Act 1998; Alliance; Health care; Computer science; Test (biology); Computer security; Data science; Business; Political science; Medicine; Law","score_opus":0.6470145737835108,"score_gpt":0.5870776970968552,"score_spread":0.059936876686655594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2518224182","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1644722,0.0036663131,0.19168037,0.49268034,0.0019947663,0.0007318902,0.0005538341,0.00019992313,0.14402044],"genre_scores_gemma":[0.94116926,0.00054067443,0.029626332,0.025909515,0.00046861405,0.0004548851,0.00012692937,0.000058740243,0.0016448952],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.7675159,0.15393613,0.016893562,0.010483705,0.041483786,0.009686906],"domain_scores_gemma":[0.49970448,0.38287967,0.030131534,0.05074139,0.030577993,0.0059649856],"candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.17050627,0.0005292978,0.0013253576,0.0029311408,0.0061366116,0.01675189,0.0039206888,0.0106053455,0.0045663305],"category_scores_gemma":[0.33161402,0.000694702,0.0020340928,0.004169231,0.05622688,0.032580875,0.0143929245,0.014613487,0.00085187395],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002634402,0.00012282318,0.023532063,0.00038108672,0.00010485813,0.00065698073,0.025048746,0.00079446426,0.0010577069,0.8850032,0.0056819567,0.05735269],"study_design_scores_gemma":[0.00007262831,0.00054860883,0.01281848,0.0017635038,0.00013505638,0.0031105005,0.027761402,0.0040838337,0.0053345105,0.87368286,0.070499025,0.00018967154],"about_ca_topic_score_codex":0.0031534305,"about_ca_topic_score_gemma":0.0015258677,"teacher_disagreement_score":0.9960793,"about_ca_system_score_codex":0.005411338,"about_ca_system_score_gemma":0.012279266,"threshold_uncertainty_score":0.9017341},"labels":[],"label_agreement":null},{"id":"W2519126396","doi":"10.1038/npjgenmed.2016.31","title":"The importance of copy number variation in congenital heart disease","year":2016,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Hospital for Sick Children; Mount Sinai Hospital; Centre for Addiction and Mental Health","funders":"Canadian Institutes of Health Research; University of Toronto","keywords":"Copy-number variation; Genetic architecture; Biology; Genetics; Heart disease; Genome; Chromosome; Disease; Genetic variation; Human genome; Microarray; Gene; Computational biology; Medicine; Quantitative trait locus; Pathology; Gene expression","score_opus":0.012009536502122694,"score_gpt":0.2971669519681923,"score_spread":0.2851574154660696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2519126396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88236195,0.057415888,0.02998692,0.0067632194,0.0007925731,0.000039523686,0.0032303461,0.00029707095,0.019112572],"genre_scores_gemma":[0.99359494,0.0027368504,0.0020885284,0.00027875142,0.00024539977,0.0000095673195,0.00026488455,0.000030365469,0.00075074926],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982503,0.00054581434,0.00012300158,0.0005103836,0.00051068765,0.000059754737],"domain_scores_gemma":[0.9948343,0.003521288,0.00081081514,0.00038813727,0.00025630975,0.00018920955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013991871,0.00024040941,0.00030711733,0.0015093797,0.00018976699,0.0010864405,0.0005714589,0.00056795194,0.0016501468],"category_scores_gemma":[0.0078017246,0.00014541319,0.00020469047,0.0011708623,0.00085432,0.00070359017,0.0005956568,0.00056326744,0.0002298043],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006134112,0.00007083982,0.66019285,0.00051848835,0.00095617305,0.003736553,0.00046286194,0.00531506,0.08134089,0.017893972,0.0044316608,0.22446737],"study_design_scores_gemma":[0.000039669267,0.0002416868,0.90188015,0.00015042482,0.0004180614,0.02044994,0.00020894478,0.010456195,0.015035513,0.035932343,0.015101265,0.00008586394],"about_ca_topic_score_codex":0.0010753225,"about_ca_topic_score_gemma":0.0008093351,"teacher_disagreement_score":0.0016501468,"about_ca_system_score_codex":0.00041492895,"about_ca_system_score_gemma":0.00019655506,"threshold_uncertainty_score":0.007399738},"labels":[],"label_agreement":null},{"id":"W2519965059","doi":"10.1038/npjgenmed.2016.33","title":"De novo large rare copy-number variations contribute to conotruncal heart disease in Chinese patients","year":2016,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Centre for Addiction and Mental Health; University Health Network","funders":"University of Hong Kong; Children's Heart Foundation","keywords":"Copy-number variation; Medicine; Disease; Cardiology; Internal medicine; Biology; Genetics; Gene; Genome","score_opus":0.00707170276745739,"score_gpt":0.2980992458766226,"score_spread":0.29102754310916523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2519965059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995122,0.00007922203,0.00006458019,0.0000198405,0.0000022742418,0.0000062244294,0.00006386251,0.0000035890837,0.00024822148],"genre_scores_gemma":[0.9996245,0.00005220818,0.00008114079,0.000014049523,0.0000049634127,0.000004471174,0.00006241415,0.0000013612298,0.00015483754],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998198,0.00002084585,0.000023842289,0.000060539267,0.000039515264,0.000035421726],"domain_scores_gemma":[0.99970824,0.00008948114,0.000080181846,0.000024765708,0.000029525678,0.00006768092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002098849,0.0004093251,0.0002855773,0.00092053495,0.00074864697,0.00027070465,0.00023780573,0.0002911282,0.0023346182],"category_scores_gemma":[0.000795033,0.00015987975,0.0002413628,0.000918779,0.00033142394,0.00018747825,0.00028588838,0.00018695414,0.00014542746],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027181624,0.000056810844,0.9597494,0.000047810747,0.00006517701,0.01066149,0.0012679907,0.0002125383,0.018589789,0.00020216378,0.00025641048,0.008618644],"study_design_scores_gemma":[0.000016025226,0.000111959336,0.98849595,0.000008956357,0.000057330668,0.008578618,0.0003662218,0.00059435726,0.0012134565,0.000106406405,0.00043830342,0.000012315169],"about_ca_topic_score_codex":0.010946137,"about_ca_topic_score_gemma":0.010081665,"teacher_disagreement_score":0.010946137,"about_ca_system_score_codex":0.00035260513,"about_ca_system_score_gemma":0.00028040286,"threshold_uncertainty_score":0.021764815},"labels":[],"label_agreement":null},{"id":"W2523077096","doi":"10.1038/npjgenmed.2016.32","title":"The ONDRISeq panel: custom-designed next-generation sequencing of genes related to neurodegeneration","year":2016,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Neurological diseases and metabolism","field":"Neuroscience","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sunnybrook Health Science Centre; Children's Hospital of Eastern Ontario; University of Ottawa; Health Sciences Centre; Occupational Cancer Research Centre; University of Toronto; Western University","funders":"University College London; Canadian Institutes of Health Research; Temerty Family Foundation; University of Ottawa","keywords":"Sanger sequencing; Frontotemporal dementia; Neurodegeneration; Genetics; Genotyping; Biology; Disease; Dementia; Amyotrophic lateral sclerosis; DNA sequencing; Medicine; Bioinformatics; Computational biology; Gene; Genotype; Internal medicine","score_opus":0.15362221375222546,"score_gpt":0.28875467847307557,"score_spread":0.1351324647208501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2523077096","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.68960035,0.0014615372,0.14566323,0.00040963327,0.0002978441,0.0022716736,0.14315644,0.0029575715,0.014181749],"genre_scores_gemma":[0.5768683,0.00076851825,0.24926971,0.002061435,0.00016397158,0.0029609515,0.1446323,0.000988794,0.02228598],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987134,0.00016966436,0.00008175268,0.00045063294,0.00045063102,0.00013397884],"domain_scores_gemma":[0.9993247,0.00017960893,0.000091676055,0.00012252576,0.00021083975,0.0000705956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010617013,0.00081100763,0.0006129625,0.001015898,0.0006372031,0.00066817296,0.0007140117,0.0005698503,0.0052594305],"category_scores_gemma":[0.0013452902,0.00039877056,0.000740451,0.0010138811,0.00036311775,0.00022872377,0.000635746,0.00054262416,0.0015926969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001732701,0.00018418526,0.035495453,0.00037423038,0.00036656993,0.0005712356,0.0003797825,0.0048583886,0.9024585,0.0007221288,0.013004308,0.03985255],"study_design_scores_gemma":[0.00077655236,0.0013175517,0.30529734,0.00012493045,0.0007354782,0.0014175258,0.00022973731,0.040703647,0.533846,0.0011350118,0.114150055,0.00026615223],"about_ca_topic_score_codex":0.020785796,"about_ca_topic_score_gemma":0.07328775,"teacher_disagreement_score":0.020785796,"about_ca_system_score_codex":0.0010538062,"about_ca_system_score_gemma":0.0012139215,"threshold_uncertainty_score":0.041329622},"labels":[],"label_agreement":null},{"id":"W2605648011","doi":"10.1038/s41525-017-0015-6","title":"Phenotypic profiling of CFTR modulators in patient-derived respiratory epithelia","year":2017,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McMaster University; University of Toronto","funders":"Cystic Fibrosis Canada; Canadian Institutes of Health Research; Cystic Fibrosis Foundation Therapeutics; Cystic Fibrosis Foundation","keywords":"Cystic fibrosis; Cystic fibrosis transmembrane conductance regulator; Phenotype; Medicine; Drug; Drug discovery; Idiopathic pulmonary fibrosis; Lung; Pathology; Cancer research; Bioinformatics; Biology; Pharmacology; Internal medicine; Gene; Genetics","score_opus":0.03771371062956125,"score_gpt":0.3321598088019279,"score_spread":0.29444609817236667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605648011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9643324,0.0019798847,0.027040236,0.00035900192,0.00004415144,0.00026966762,0.0028333287,0.00032214037,0.002819271],"genre_scores_gemma":[0.97443753,0.0014833526,0.019010713,0.00050749915,0.000019312369,0.00024989454,0.0026215198,0.00009211167,0.0015780032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938405,0.00015981747,0.000060360606,0.00012130928,0.00022520366,0.000049242906],"domain_scores_gemma":[0.9996735,0.00012134037,0.00004339127,0.00005251275,0.00007571043,0.000033578235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067528174,0.0002880336,0.00041432283,0.0004486805,0.00021041709,0.0006376788,0.00019897016,0.0005329895,0.0010710602],"category_scores_gemma":[0.0008036887,0.00011740689,0.00031867938,0.00031166978,0.00023664135,0.00020008117,0.00030397595,0.00075818,0.0004856141],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099880344,0.000054773518,0.004942039,0.000047380607,0.000017563976,0.00015345916,0.00009737225,0.00026224725,0.9887417,0.00008471717,0.00013450206,0.0053643966],"study_design_scores_gemma":[0.0000105334575,0.0006426458,0.030172361,0.000016252901,0.00006459735,0.0010951067,0.00020007651,0.0020808158,0.96211606,0.00012316051,0.0034631302,0.000015388172],"about_ca_topic_score_codex":0.00035316037,"about_ca_topic_score_gemma":0.00072411017,"teacher_disagreement_score":0.0010710602,"about_ca_system_score_codex":0.00017723725,"about_ca_system_score_gemma":0.0002006017,"threshold_uncertainty_score":0.0035830736},"labels":[],"label_agreement":null},{"id":"W2607198221","doi":"10.1038/s41525-017-0018-3","title":"Mining the transcriptome for rare disease therapies: a comparison of the efficiencies of two data mining approaches and a targeted cell-based drug screen","year":2017,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"Genome British Columbia; Ontario Genomics Institute; Canadian Institutes of Health Research; Genome Canada; Ontario Genomics; Pfizer","keywords":"Drug repositioning; Computational biology; Haploinsufficiency; Drug discovery; Drug; Transcriptome; Biology; Gene; Repurposing; Disease; Function (biology); Bioinformatics; Gene expression; Genetics; Pharmacology; Medicine; Phenotype","score_opus":0.062461626329833285,"score_gpt":0.2931921210480557,"score_spread":0.2307304947182224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2607198221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7297307,0.003937007,0.2569253,0.0007500592,0.000035750272,0.00041212188,0.0026417323,0.002624471,0.0029428217],"genre_scores_gemma":[0.71823514,0.002921443,0.2712423,0.00021718665,0.000020529165,0.00023373259,0.006287208,0.00018143734,0.0006609687],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976254,0.0008960946,0.0002237224,0.0003705369,0.00077202666,0.00011225537],"domain_scores_gemma":[0.9925823,0.0059161335,0.00041478104,0.0005902963,0.00040576115,0.000090734364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034187036,0.0007451235,0.0010340012,0.002687694,0.0003359671,0.0013593308,0.000633573,0.0006766978,0.00059427286],"category_scores_gemma":[0.007922711,0.00026495758,0.0012814715,0.0018281717,0.00032964666,0.0009977681,0.00091934693,0.0004923912,0.00029039555],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028599177,0.0007455505,0.05444369,0.0017544607,0.00092716527,0.00085718604,0.0006754418,0.07822037,0.257406,0.0027868315,0.00097119395,0.5983522],"study_design_scores_gemma":[0.00026817375,0.0026375994,0.08710084,0.00020604368,0.0011070954,0.003013319,0.0011059863,0.6144355,0.2745408,0.0064478926,0.008963725,0.00017302384],"about_ca_topic_score_codex":0.0014104627,"about_ca_topic_score_gemma":0.0020471595,"teacher_disagreement_score":0.0034187036,"about_ca_system_score_codex":0.00044587225,"about_ca_system_score_gemma":0.00090247847,"threshold_uncertainty_score":0.018079996},"labels":[],"label_agreement":null},{"id":"W2608197006","doi":"10.1038/s41525-017-0020-9","title":"Variable phenotype expression in a family segregating microdeletions of the NRXN1 and MBD5 autism spectrum disorder susceptibility genes","year":2017,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Addiction and Mental Health; Western University; SickKids Foundation; University of Toronto; McMaster University; Hospital for Sick Children","funders":"Institute of Genetics; Ontario Genomics Institute; Canadian Institutes of Health Research; Ontario Genomics; Genome Canada; Hospital for Sick Children; Wellcome Trust; University of Toronto; GlaxoSmithKline; Government of Ontario; Autism Speaks","keywords":"Penetrance; Copy-number variation; Genetics; Proband; Autism; Phenotype; Autism spectrum disorder; Biology; Gene; Mutation; Medicine; Genome; Psychiatry","score_opus":0.03554024540837489,"score_gpt":0.2993965220990769,"score_spread":0.263856276690702,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2608197006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970753,0.0001640843,0.0008248675,0.00019702289,0.000023287268,0.0000148117915,0.000096563825,0.000022775452,0.0015812947],"genre_scores_gemma":[0.9989672,0.000066743654,0.00041643955,0.000038955182,0.000013165286,0.0000032429775,0.000031577692,0.0000060467073,0.00045654897],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.99972326,0.000039928273,0.000024388073,0.00010368386,0.000063560685,0.000045188648],"domain_scores_gemma":[0.9996612,0.00012727585,0.00006841584,0.000017554596,0.000031276875,0.0000943783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020614927,0.00063197064,0.00030254186,0.0010612326,0.0007918363,0.00038934918,0.00034316943,0.00067213277,0.0017048775],"category_scores_gemma":[0.0010009872,0.00021762203,0.00027244433,0.00040553202,0.000663611,0.00018208947,0.0005370616,0.0004532639,0.00019972914],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011672982,0.00008341731,0.044974517,0.000020432197,0.000021106996,0.9270568,0.0011166394,0.00018716454,0.022105213,0.00034909276,0.00025145418,0.0037173831],"study_design_scores_gemma":[0.000010820628,0.00019515851,0.06958097,0.000014733227,0.000040116036,0.92345023,0.00044657663,0.0007737271,0.0045529073,0.00019253584,0.0007255833,0.000016635238],"about_ca_topic_score_codex":0.0026060157,"about_ca_topic_score_gemma":0.0025296032,"teacher_disagreement_score":0.0026060157,"about_ca_system_score_codex":0.00044200564,"about_ca_system_score_gemma":0.0002042931,"threshold_uncertainty_score":0.0057033896},"labels":[],"label_agreement":null},{"id":"W2610557320","doi":"10.1038/s41525-017-0019-2","title":"The clinical impact of copy number variants in inherited bone marrow failure syndromes","year":2017,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Blood disorders and treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"SickKids Foundation; Janeway Children's Health and Rehabilitation Centre; London Health Sciences Centre; McMaster University; University of Alberta; Centre hospitalier universitaire de Québec; Centre Hospitalier Universitaire de Sherbrooke; Centre Hospitalier Universitaire Sainte-Justine; Population Health Research Institute; Children's Hospital of Eastern Ontario; CancerCare Manitoba; BC Children's Hospital; Royal University Hospital; Montreal Children's Hospital; University of Toronto; Princess Margaret Cancer Centre; Kingston General Hospital; University of Manitoba; Alberta Children's Hospital; Izaak Walton Killam Health Centre; Hospital for Sick Children","funders":"Garron Family Cancer Centre; Canadian Institutes of Health Research; Childhood Cancer Canada; C17 Council","keywords":"Copy-number variation; Biology; Bone marrow; Genetics; Bone marrow failure; Genotype; Myelodysplastic syndromes; Comparative genomic hybridization; Haematopoiesis; Gene; Genome; Immunology; Stem cell","score_opus":0.02626536263923573,"score_gpt":0.3568558615338376,"score_spread":0.33059049889460185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2610557320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978072,0.0010314143,0.00013646991,0.00006333574,0.000003952795,0.0000035209162,0.00024882364,0.0000067047017,0.00069854106],"genre_scores_gemma":[0.999653,0.00011510487,0.00007661768,0.000008073981,0.0000031324726,6.67575e-7,0.00009882392,0.0000013265342,0.000043398984],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99935097,0.000113910435,0.00004452135,0.00010740791,0.00029533583,0.00008783609],"domain_scores_gemma":[0.99793136,0.0009979992,0.00053327176,0.00007695046,0.0002819188,0.00017843962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058836956,0.00025722926,0.00019429353,0.001382274,0.0003016749,0.00054837234,0.0004622051,0.00028371802,0.0013305544],"category_scores_gemma":[0.0044128234,0.00010543208,0.0001916967,0.0010788152,0.0006508646,0.0002160796,0.00031845068,0.00024694332,0.000104900086],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001687845,0.0000062752147,0.9913762,0.000014878222,0.000037125585,0.0012666368,0.000062689556,0.00015505607,0.002155964,0.00005366588,0.00008445847,0.0046183313],"study_design_scores_gemma":[0.0000044337326,0.0000409395,0.9944957,0.0000091161955,0.000030617735,0.004173008,0.00008144238,0.00044925074,0.00049373537,0.00007760688,0.00013929581,0.0000048891666],"about_ca_topic_score_codex":0.04119456,"about_ca_topic_score_gemma":0.048549376,"teacher_disagreement_score":0.04119456,"about_ca_system_score_codex":0.0007626038,"about_ca_system_score_gemma":0.00060560455,"threshold_uncertainty_score":0.08190954},"labels":[],"label_agreement":null},{"id":"W2618126970","doi":"10.1038/s41525-017-0021-8","title":"Genome sequencing as a platform for pharmacogenetic genotyping: a pediatric cohort study","year":2017,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children; University of Toronto; Genome Canada","keywords":"Concordance; Genotyping; Exome sequencing; Pharmacogenetics; Copy-number variation; Genome; Genetics; 1000 Genomes Project; Biology; Whole genome sequencing; DNA sequencing; Genomics; Computational biology; Genotype; Single-nucleotide polymorphism; Gene; Phenotype","score_opus":0.030595321088108415,"score_gpt":0.3156368163463766,"score_spread":0.28504149525826816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2618126970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99446845,0.00019945903,0.0019116885,0.00011062685,0.000012784913,0.00007840085,0.0026504805,0.000019131556,0.00054904254],"genre_scores_gemma":[0.9934342,0.00036629665,0.0030611905,0.000103464256,0.000020896758,0.00011799255,0.0025678545,0.000040548188,0.00028769305],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99872404,0.0004572803,0.000079880156,0.00031672794,0.00031251536,0.000109570734],"domain_scores_gemma":[0.99831414,0.00035967198,0.00045055398,0.0003788809,0.00026937746,0.00022732627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016588862,0.00052671076,0.00047887323,0.0007823544,0.00066575024,0.00077976985,0.00040912593,0.00048298805,0.0017701995],"category_scores_gemma":[0.0032948377,0.00036381945,0.00042127987,0.0016056577,0.00029828105,0.00040590367,0.0006783295,0.0008785541,0.00044433275],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031598,0.0000631372,0.9893022,0.000016649841,0.00012598999,0.0010049962,0.00021759632,0.00023424874,0.0026008717,0.00017884481,0.0008719194,0.005067596],"study_design_scores_gemma":[0.00012052917,0.0006883193,0.9821268,0.000035009118,0.00025085604,0.007613368,0.00037794997,0.0016784837,0.001729693,0.00020843775,0.005146994,0.00002361543],"about_ca_topic_score_codex":0.0063441377,"about_ca_topic_score_gemma":0.004303001,"teacher_disagreement_score":0.0063441377,"about_ca_system_score_codex":0.00033998824,"about_ca_system_score_gemma":0.0006155584,"threshold_uncertainty_score":0.012614429},"labels":[],"label_agreement":null},{"id":"W2724865486","doi":"10.1038/s41525-017-0024-5","title":"A homozygous mutation in the stem II domain of RNU4ATAC causes typical Roifman syndrome","year":2017,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ontario Genomics; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Ontario Ministry of Research and Innovation; Hospital for Sick Children; Research and Innovation Foundation; Genome Canada; Ontario Genomics; Ontario Genomics Institute; Immunodeficiency Canada; Jeffrey Modell Foundation","keywords":"Intron; RNA splicing; Biology; Mutation; Genetics; Gene; RNA; Compound heterozygosity; Molecular biology","score_opus":0.023395736346856277,"score_gpt":0.28842284786700245,"score_spread":0.2650271115201462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2724865486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981856,0.00016244958,0.00056777365,0.000063964086,0.000009890275,0.0000163287,0.0001625911,0.000037113743,0.0007942355],"genre_scores_gemma":[0.998966,0.000055047778,0.000560373,0.000029072835,0.000006101953,0.0000041838202,0.00008232406,0.000010283999,0.0002866785],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997974,0.000025840076,0.000019072711,0.00006053901,0.000057980815,0.000039276292],"domain_scores_gemma":[0.99977297,0.00008590548,0.000058875485,0.000011698737,0.000015034475,0.000055492896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000115491035,0.0005472912,0.00025269674,0.0007579741,0.00031999766,0.00016971391,0.0002252973,0.00047544876,0.0018190105],"category_scores_gemma":[0.00047555479,0.0001764476,0.00021817964,0.00030256985,0.0005176994,0.0000888978,0.00028138596,0.0001945987,0.00028610817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005531858,0.0000995733,0.061512414,0.00015655163,0.0001158307,0.22863127,0.00046359794,0.0005717346,0.6940766,0.00063916476,0.0009289342,0.012251079],"study_design_scores_gemma":[0.0001324512,0.00060199463,0.29892254,0.000060783645,0.00019585961,0.5127927,0.00048335703,0.0024313782,0.17856546,0.0005908672,0.005164128,0.000058464706],"about_ca_topic_score_codex":0.0032672302,"about_ca_topic_score_gemma":0.0056813774,"teacher_disagreement_score":0.0032672302,"about_ca_system_score_codex":0.00033849716,"about_ca_system_score_gemma":0.0002900718,"threshold_uncertainty_score":0.0064964294},"labels":[],"label_agreement":null},{"id":"W2759153061","doi":"10.1038/s41525-017-0031-6","title":"Atypical autism in a boy with double duplication of 22q11.2: implications of increasing dosage","year":2017,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"Hospital for Sick Children; GlaxoSmithKline; University of Toronto; Physicians' Services Incorporated Foundation; Canadian Institutes of Health Research; Genome Canada; Autism Speaks","keywords":"Autism; Gene duplication; Psychology; Genetics; Developmental psychology; Biology; Gene","score_opus":0.028263791792605315,"score_gpt":0.33498824186104276,"score_spread":0.30672445006843746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2759153061","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997357,0.00027951246,0.00051065517,0.00035751803,0.00003200086,0.000021453097,0.000096806536,0.000049427203,0.0012956753],"genre_scores_gemma":[0.99793315,0.00021087391,0.0010272416,0.00011924891,0.000063022926,0.000015645843,0.000036818983,0.000016772641,0.0005771733],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9995745,0.0000665389,0.000043861495,0.00014108213,0.000080880855,0.0000931544],"domain_scores_gemma":[0.99936813,0.00023743442,0.00016999675,0.000020266576,0.000028497903,0.00017566922],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023535361,0.0015769078,0.001030459,0.001548688,0.0013652015,0.00059305865,0.00066376786,0.0016589748,0.0017170684],"category_scores_gemma":[0.0014352279,0.0006992249,0.00058361853,0.00079117523,0.0012987698,0.00046496547,0.0009088823,0.0012886297,0.00038263464],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010262784,0.00005058367,0.020355085,0.000045704728,0.000016675873,0.9695867,0.00054226094,0.00020417127,0.00698765,0.00022329846,0.00021121443,0.0016739937],"study_design_scores_gemma":[0.000028418686,0.00020971648,0.04273074,0.000017151046,0.00004129007,0.9543999,0.0003076832,0.00038931964,0.0013176268,0.0001571753,0.00038271476,0.000018255034],"about_ca_topic_score_codex":0.004325836,"about_ca_topic_score_gemma":0.005608927,"teacher_disagreement_score":0.004325836,"about_ca_system_score_codex":0.00060587993,"about_ca_system_score_gemma":0.0005611572,"threshold_uncertainty_score":0.008601308},"labels":[],"label_agreement":null},{"id":"W2759930271","doi":"10.1038/s41525-017-0032-5","title":"Identification of potentially oncogenic alterations from tumor-only samples reveals Fanconi anemia pathway mutations in bladder carcinomas","year":2017,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Advancing Translational Sciences; National Institute of General Medical Sciences; National Human Genome Research Institute; Deutsches Krebsforschungszentrum; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; McGill University; St. Jude Children's Research Hospital; National Cancer Institute; National Institutes of Health; National Science Foundation","keywords":"Germline; Somatic cell; Fanconi anemia; Germline mutation; Biology; Cancer research; Cancer; Genetics; Bladder cancer; Mutation; Gene; DNA repair","score_opus":0.0179841426738783,"score_gpt":0.2737239759925932,"score_spread":0.25573983331871486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2759930271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99660385,0.0001459662,0.0026657453,0.000019298386,0.0000018982468,0.0000073633346,0.0003501679,0.000037618407,0.00016795448],"genre_scores_gemma":[0.99690044,0.0000442322,0.0024195344,0.0000073012966,0.0000019818374,0.0000040603973,0.0005322991,0.000003999834,0.00008616845],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998036,0.000035034765,0.000020619696,0.000055721095,0.000051404935,0.000033680106],"domain_scores_gemma":[0.9996568,0.00013561478,0.000072631956,0.000039448052,0.000053634358,0.000041899868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047512457,0.00021448387,0.0002806979,0.0017496787,0.00025288714,0.00044655497,0.00018823807,0.00026908968,0.00053035025],"category_scores_gemma":[0.00095817406,0.00011876566,0.0002637634,0.00070678233,0.00017285184,0.00014475662,0.00033375729,0.00017926113,0.000110799185],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040127788,0.00011144843,0.7840541,0.000064556545,0.00013399345,0.00042933185,0.00012691473,0.0037127682,0.16406864,0.00018492383,0.00029116127,0.04642093],"study_design_scores_gemma":[0.00001874002,0.00017390438,0.87916744,0.000023603056,0.00015241234,0.0026305337,0.00020594227,0.057692293,0.0580279,0.00074152445,0.0011448823,0.000020797983],"about_ca_topic_score_codex":0.0019398874,"about_ca_topic_score_gemma":0.0038230612,"teacher_disagreement_score":0.0019398874,"about_ca_system_score_codex":0.00022938398,"about_ca_system_score_gemma":0.00022896205,"threshold_uncertainty_score":0.0038571954},"labels":[],"label_agreement":null},{"id":"W2765398558","doi":"10.1038/s41525-017-0036-1","title":"A community effort to protect genomic data sharing, collaboration and outsourcing","year":2017,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Ethics in Clinical Research","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill Genome Centre","funders":"National Institute of Biomedical Imaging and Bioengineering; National Human Genome Research Institute; University of California, San Diego; National Institutes of Health","keywords":"Outsourcing; Business; Marketing","score_opus":0.880721959262247,"score_gpt":0.6777203213813717,"score_spread":0.20300163788087522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765398558","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.037126638,0.003292614,0.6213202,0.19143395,0.0075003817,0.0021526418,0.00087981694,0.0022717733,0.13402194],"genre_scores_gemma":[0.39858446,0.0024434514,0.449234,0.04911495,0.0027655908,0.0016929974,0.0029654403,0.001339132,0.091860056],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9292414,0.033974897,0.001967895,0.0065269833,0.02282686,0.005461925],"domain_scores_gemma":[0.91687757,0.02276644,0.0034701056,0.024826027,0.018965887,0.013094036],"candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.07899549,0.0012266085,0.0011682215,0.002436903,0.008280329,0.013925605,0.0054750983,0.007466744,0.012016246],"category_scores_gemma":[0.06715847,0.0008565072,0.0024385462,0.0035524333,0.0075315777,0.01631657,0.029545935,0.011813894,0.0036376212],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039454908,0.0006312337,0.0034606222,0.0005039929,0.00022824385,0.0003086785,0.0028574977,0.0074487287,0.004448997,0.5202879,0.18776871,0.27166086],"study_design_scores_gemma":[0.00020129407,0.00062003057,0.002207129,0.00036320183,0.00006127272,0.00063134974,0.0025050153,0.02939873,0.007371769,0.34926793,0.6072504,0.000121969766],"about_ca_topic_score_codex":0.006313611,"about_ca_topic_score_gemma":0.0070554256,"teacher_disagreement_score":0.9945249,"about_ca_system_score_codex":0.006879241,"about_ca_system_score_gemma":0.026726406,"threshold_uncertainty_score":0.41777307},"labels":[],"label_agreement":null},{"id":"W2793887935","doi":"10.1038/s41525-018-0047-6","title":"Improving imputation in disease-relevant regions: lessons from cystic fibrosis","year":2018,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Amgen (Canada); Public Health Ontario; University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Cystic Fibrosis Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Hospital for Sick Children; Cystic Fibrosis Foundation","keywords":"Imputation (statistics); 1000 Genomes Project; Locus (genetics); Genotype; Genome-wide association study; Genetics; Haplotype; Biology; Whole genome sequencing; Population; Computational biology; Single-nucleotide polymorphism; Missing data; Genome; Medicine; Computer science; Gene; Environmental health; Machine learning","score_opus":0.02691797001873621,"score_gpt":0.33254503463361584,"score_spread":0.30562706461487965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793887935","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.031013543,0.007871452,0.9359026,0.01881159,0.00061354076,0.00010537767,0.0011652987,0.0014980502,0.0030185885],"genre_scores_gemma":[0.48758417,0.0048630545,0.49492142,0.0067866556,0.0010048333,0.00025988583,0.0024024155,0.0006135508,0.001564039],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.97521305,0.021378644,0.0006069425,0.0015265069,0.001008326,0.0002665978],"domain_scores_gemma":[0.893718,0.08729767,0.0020059168,0.011115722,0.0052318913,0.00063073426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04942097,0.00097435573,0.0022146148,0.0010348206,0.00048769597,0.0021263396,0.0028506687,0.002082401,0.0021042249],"category_scores_gemma":[0.20024173,0.00064861984,0.0015529387,0.0026347435,0.0011128496,0.0020348132,0.0015907336,0.003335575,0.00082864944],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010612565,0.00029590185,0.07729609,0.0010094491,0.0035683608,0.0007617619,0.0010349187,0.19191357,0.0019383937,0.030972771,0.04377518,0.6463723],"study_design_scores_gemma":[0.0006106366,0.00034808193,0.02495084,0.0011427521,0.0010840399,0.0009801104,0.00034478572,0.5633489,0.0035199514,0.36993268,0.033490025,0.00024719856],"about_ca_topic_score_codex":0.007519711,"about_ca_topic_score_gemma":0.0055566346,"teacher_disagreement_score":0.04942097,"about_ca_system_score_codex":0.0007638009,"about_ca_system_score_gemma":0.0017075707,"threshold_uncertainty_score":0.2613662},"labels":[],"label_agreement":null},{"id":"W2801336752","doi":"10.1038/s41525-018-0052-9","title":"Incorporating epilepsy genetics into clinical practice: a 360°evaluation","year":2018,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; European Commission; Medical Research Council; National Institute for Health and Care Research; South London and Maudsley NHS Foundation Trust","keywords":"Epilepsy; Medicine; Genetic counseling; Genetic testing; Pediatrics; Population; Etiology; Medical genetics; Clinical trial; Dravet syndrome; Psychiatry; Internal medicine; Genetics; Gene","score_opus":0.037672680669536815,"score_gpt":0.39444187847720785,"score_spread":0.356769197807671,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2801336752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.75912905,0.020347146,0.005243405,0.16109589,0.001208388,0.0016163926,0.0021652025,0.00039122885,0.048803378],"genre_scores_gemma":[0.9528257,0.009123237,0.014406658,0.015427657,0.00074580905,0.00051575474,0.0011423317,0.0001134997,0.0056993514],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9643722,0.022324163,0.0032414685,0.0010393795,0.007139073,0.0018837254],"domain_scores_gemma":[0.918528,0.021616647,0.00901348,0.0028098603,0.031601407,0.016430624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.036697116,0.0005526535,0.0003199293,0.0014329446,0.00097587705,0.005789554,0.0008206153,0.0010611563,0.0049343053],"category_scores_gemma":[0.038441084,0.00049697136,0.0006158365,0.0015390692,0.0010313533,0.0021392026,0.0036869731,0.0008364349,0.0011111456],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091769773,0.0011667167,0.5695299,0.0009468006,0.00018384436,0.0012003791,0.0031268892,0.0025762406,0.0011896737,0.0019136955,0.043002076,0.37424606],"study_design_scores_gemma":[0.0006399879,0.0054209502,0.7861667,0.003320701,0.00018907653,0.0028573046,0.010813081,0.004438767,0.0014966251,0.0018209801,0.1826405,0.00019533852],"about_ca_topic_score_codex":0.0087740645,"about_ca_topic_score_gemma":0.013702915,"teacher_disagreement_score":0.036697116,"about_ca_system_score_codex":0.009005748,"about_ca_system_score_gemma":0.013534754,"threshold_uncertainty_score":0.19407523},"labels":[],"label_agreement":null},{"id":"W2802269419","doi":"10.1038/s41525-018-0046-7","title":"Clinical testing of BRCA1 and BRCA2: a worldwide snapshot of technological practices","year":2018,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Cancer Institute; National Human Genome Research Institute; National Health and Medical Research Council; Florida Breast Cancer Foundation","keywords":"Genetic testing; Medicine; Snapshot (computer storage); Computer science; Database; Internal medicine","score_opus":0.04580133963204189,"score_gpt":0.39198922757549576,"score_spread":0.3461878879434539,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2802269419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96696556,0.0075786235,0.0023363247,0.0066067996,0.000040889536,0.00003998566,0.0038036022,0.00015629406,0.012471924],"genre_scores_gemma":[0.9906907,0.004239983,0.001830986,0.0010955288,0.00004133615,0.000030230694,0.0013590141,0.000024858628,0.00068732083],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99610883,0.0012333641,0.0006665409,0.0008036173,0.00087352755,0.00031423068],"domain_scores_gemma":[0.97220254,0.0059376517,0.01203217,0.00128613,0.006625117,0.0019163453],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0045505483,0.00017119308,0.00021157952,0.002622754,0.00033254465,0.0016806418,0.00050225295,0.00073885405,0.0014613409],"category_scores_gemma":[0.013086936,0.00019556316,0.00022284151,0.0043441593,0.00040869793,0.0017609962,0.0014228718,0.00076499407,0.000482492],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000100459976,0.00007850977,0.8955041,0.00017812212,0.00004648047,0.00021029348,0.001933076,0.00034700954,0.0014633905,0.00037557143,0.0038300834,0.09593291],"study_design_scores_gemma":[0.000004528468,0.00015338269,0.98636407,0.00021000068,0.00002236357,0.0006243019,0.0032787493,0.0003986629,0.0007447244,0.00018891746,0.0079823015,0.000028118071],"about_ca_topic_score_codex":0.009055654,"about_ca_topic_score_gemma":0.010258915,"teacher_disagreement_score":0.9954494,"about_ca_system_score_codex":0.0010206958,"about_ca_system_score_gemma":0.0009800466,"threshold_uncertainty_score":0.024065852},"labels":[],"label_agreement":null},{"id":"W2827643900","doi":"10.1038/s41525-018-0057-4","title":"Responsible sharing of biomedical data and biospecimens via the “Automatable Discovery and Access Matrix” (ADA-M)","year":2018,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Ethics in Clinical Research","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre for Social Innovation; McGill University and Génome Québec Innovation Centre","funders":"Canadian Institutes of Health Research; University of Oxford; Government of Canada; Genome Canada","keywords":"Computer science; Biobank; Documentation; Metadata; Data sharing; Software versioning; Stewardship (theology); Application programming interface; World Wide Web; Data access; Software; Data science; Database","score_opus":0.6592803616127312,"score_gpt":0.6326127491675698,"score_spread":0.02666761244516136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2827643900","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":"reproducibility","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":"reproducibility","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010640729,0.001471735,0.9081562,0.018385496,0.0007736763,0.0019211029,0.002041936,0.008791069,0.047818143],"genre_scores_gemma":[0.1430826,0.0018926982,0.8240724,0.0048406054,0.0008838716,0.0029170616,0.0041149836,0.0011317722,0.017064024],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.90383536,0.045934413,0.01410049,0.010321291,0.022589397,0.0032191114],"domain_scores_gemma":[0.81867635,0.061518017,0.01584315,0.07269634,0.020605473,0.010660635],"candidate_categories":["metaresearch","open_science"],"consensus_categories":[],"category_scores_codex":[0.07307052,0.0016300234,0.0017418367,0.010733547,0.006900138,0.027084064,0.0051898705,0.005020843,0.009061959],"category_scores_gemma":[0.1288453,0.0021475467,0.0027347875,0.0074286857,0.011250755,0.03819868,0.03432416,0.006873315,0.010020308],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034977135,0.00015410471,0.0038538822,0.00061303796,0.0001340358,0.00037274303,0.0023728875,0.0020754281,0.0044235196,0.78224546,0.03953987,0.1638652],"study_design_scores_gemma":[0.000101993,0.00023141685,0.001162764,0.00055783166,0.00009737245,0.0010398823,0.00081922393,0.017286893,0.0071650716,0.4339127,0.53733635,0.00028859804],"about_ca_topic_score_codex":0.0049783564,"about_ca_topic_score_gemma":0.0034673293,"teacher_disagreement_score":0.9948101,"about_ca_system_score_codex":0.006899171,"about_ca_system_score_gemma":0.025841221,"threshold_uncertainty_score":0.38643843},"labels":[],"label_agreement":null},{"id":"W2886102814","doi":"10.1038/s41525-018-0063-6","title":"Two different STAT1 gain-of-function mutations lead to diverse IFN-γ-mediated gene expression","year":2018,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Immunodeficiency Canada; Jeffrey Modell Foundation","keywords":"Gene; Function (biology); Lead (geology); Gain of function; Genetics; Gene expression; Biology; Expression (computer science); Mutation; Computational biology; Computer science","score_opus":0.018990183123280897,"score_gpt":0.2632231606054902,"score_spread":0.24423297748220932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2886102814","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979139,0.00017466825,0.0010013165,0.000046226458,0.000012846213,0.000015569185,0.00030739343,0.000036531503,0.0004915237],"genre_scores_gemma":[0.9981573,0.00011654402,0.00097611407,0.000057344107,0.000004750252,0.000011729516,0.00035187256,0.000016598424,0.00030773386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997625,0.000031024283,0.00003431181,0.000052790743,0.00006227671,0.00005707839],"domain_scores_gemma":[0.99984384,0.00005084343,0.00004094203,0.000016641286,0.0000070594933,0.000040650546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013717322,0.0005786551,0.00026134824,0.00063485233,0.00014732411,0.00022887911,0.00022055252,0.00055071636,0.0013743652],"category_scores_gemma":[0.00027295522,0.00016130229,0.00049642805,0.00029127285,0.00054604973,0.00011904708,0.00034700488,0.00054481917,0.0002748991],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045391233,0.000063850144,0.006285803,0.0000330278,0.000026224547,0.0026923416,0.0000718899,0.00014697015,0.9852386,0.00035120427,0.0000842441,0.004551885],"study_design_scores_gemma":[0.00022972694,0.0012846102,0.15722947,0.000029142733,0.00014370846,0.04342226,0.00029669664,0.0030400776,0.7903873,0.00082335563,0.003058134,0.000055511166],"about_ca_topic_score_codex":0.00034087425,"about_ca_topic_score_gemma":0.00077230524,"teacher_disagreement_score":0.0013743652,"about_ca_system_score_codex":0.00032868359,"about_ca_system_score_gemma":0.00014724393,"threshold_uncertainty_score":0.0045977235},"labels":[],"label_agreement":null},{"id":"W2889618178","doi":"10.1038/s41525-018-0065-4","title":"User considerations in assessing pharmacogenomic tests and their clinical support tools","year":2018,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Pharmacogenetics and Drug Metabolism","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; WSP (Canada)","funders":"","keywords":"Pharmacogenomics; Computer science; Test (biology); Key (lock); Clinical decision support system; Decision support system; Risk analysis (engineering); Data science; Data mining; Medicine; Pharmacology","score_opus":0.48380413423267077,"score_gpt":0.5796990875447691,"score_spread":0.0958949533120983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889618178","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0025932435,0.96535105,0.005262531,0.015485755,0.0006427867,0.0001239021,0.00018919661,0.00007844348,0.010273075],"genre_scores_gemma":[0.052700512,0.9024691,0.023468247,0.015746312,0.0017744434,0.00037242877,0.00043605955,0.00007321608,0.0029596929],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9741726,0.014802866,0.0031633445,0.0010283483,0.006413038,0.00041968818],"domain_scores_gemma":[0.9000648,0.08659229,0.0033389754,0.0010970389,0.008291492,0.00061536947],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.029844653,0.0006837301,0.0018861083,0.0024981569,0.0004362537,0.0048354617,0.0017580196,0.0038579977,0.0044560707],"category_scores_gemma":[0.080273114,0.0003858967,0.0010249424,0.00225316,0.0016056036,0.0041061523,0.0019247322,0.0029510735,0.00182868],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013802524,0.000061527,0.004016982,0.01593483,0.00019371475,0.00059078226,0.00092283415,0.00019626698,0.00052341557,0.006441938,0.017849969,0.9531298],"study_design_scores_gemma":[0.00011429959,0.0003582583,0.010957551,0.056955907,0.00085289445,0.012060051,0.002405344,0.00065001356,0.0024355291,0.01557408,0.89746886,0.00016716677],"about_ca_topic_score_codex":0.0016014727,"about_ca_topic_score_gemma":0.002663864,"teacher_disagreement_score":0.029844653,"about_ca_system_score_codex":0.00076936884,"about_ca_system_score_gemma":0.0030788863,"threshold_uncertainty_score":0.15783554},"labels":[],"label_agreement":null},{"id":"W2890649749","doi":"10.1038/s41525-018-0066-3","title":"Heterogeneity in clinical sequencing tests marketed for autism spectrum disorders","year":2018,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; University of Toronto; Genome Canada; GlaxoSmithKline","keywords":"Autism; Medicine; Psychiatry","score_opus":0.02573786431447414,"score_gpt":0.3297126553452953,"score_spread":0.30397479103082115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2890649749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9073105,0.016964613,0.016056139,0.013670456,0.00075172016,0.000308166,0.0094013205,0.00089344993,0.034643594],"genre_scores_gemma":[0.9841511,0.001330717,0.0048595667,0.0030219178,0.00028779803,0.00014018666,0.004810544,0.00021345806,0.0011846925],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9748548,0.007600521,0.0029715288,0.0040045665,0.009067946,0.001500553],"domain_scores_gemma":[0.87552863,0.095906876,0.010948262,0.004606993,0.009823509,0.0031858066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.021754032,0.0003982129,0.0007027327,0.005588616,0.0004713152,0.0027533902,0.0013931227,0.0017825782,0.0050076037],"category_scores_gemma":[0.118864305,0.00040672623,0.0007401299,0.0027460533,0.0016905916,0.0015941876,0.0015720917,0.0011483823,0.0016025848],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007440716,0.00034129314,0.5731439,0.00075581536,0.0009688899,0.0033817904,0.0014099437,0.00383756,0.036854703,0.02098036,0.029876057,0.32100904],"study_design_scores_gemma":[0.0005106779,0.002104369,0.8069134,0.0013434235,0.0010791926,0.018805755,0.0016355382,0.008612416,0.0515478,0.02114706,0.086067624,0.00023272423],"about_ca_topic_score_codex":0.0018015295,"about_ca_topic_score_gemma":0.0022005737,"teacher_disagreement_score":0.021754032,"about_ca_system_score_codex":0.0016843181,"about_ca_system_score_gemma":0.0014913547,"threshold_uncertainty_score":0.11504763},"labels":[],"label_agreement":null},{"id":"W2942256198","doi":"10.1038/s41525-019-0083-x","title":"Expanding the neurodevelopmental phenotypes of individuals with de novo KMT2A variants","year":2019,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Amgen (Canada); Hamilton Health Sciences; Hospital for Sick Children; University of Toronto","funders":"National Cancer Institute; Autism Speaks; University of Toronto; National Institute on Alcohol Abuse and Alcoholism; Hospital for Sick Children; National Human Genome Research Institute; Canada Foundation for Innovation; Canadian Institutes of Health Research; Genome Canada; Canadian Institute for Advanced Research; National Institute on Drug Abuse; Government of Ontario","keywords":"Missense mutation; Autism; Phenotype; Genetics; Biology; Autism spectrum disorder; Neurodevelopmental disorder; Copy-number variation; Mutation; Intellectual disability; Genotype; Gene; Medicine; Genome; Psychiatry","score_opus":0.029453301724044836,"score_gpt":0.2907914114520865,"score_spread":0.26133810972804167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2942256198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9651415,0.027728569,0.0035013172,0.00031145694,0.00013233197,0.000042647407,0.0021857724,0.000071395974,0.0008850893],"genre_scores_gemma":[0.9972156,0.0013957173,0.0005020343,0.00008990706,0.000063148174,0.000012201388,0.00059900753,0.000019303145,0.000103112776],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99721766,0.0006276983,0.0004787381,0.0012403419,0.00033070723,0.00010479912],"domain_scores_gemma":[0.9951331,0.0028850238,0.0010730987,0.00049337547,0.00028163625,0.0001337316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034727922,0.000980096,0.0012775352,0.002496145,0.0005599847,0.0012137081,0.0007429159,0.0010177885,0.0022466723],"category_scores_gemma":[0.0071495655,0.00043688793,0.003668277,0.0024774666,0.00052882987,0.000629311,0.0006775267,0.00083595683,0.00024223606],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002975748,0.00005702746,0.9318545,0.00088892254,0.03430887,0.003446326,0.00020310812,0.001238188,0.008789799,0.00029188025,0.0006857502,0.015259879],"study_design_scores_gemma":[0.00033768284,0.00052085635,0.930019,0.0004553166,0.04384441,0.010716812,0.0003125402,0.005060581,0.0033239066,0.0016269012,0.003718747,0.000063210435],"about_ca_topic_score_codex":0.0029397418,"about_ca_topic_score_gemma":0.0030917737,"teacher_disagreement_score":0.0034727922,"about_ca_system_score_codex":0.00035097805,"about_ca_system_score_gemma":0.00022060363,"threshold_uncertainty_score":0.018366098},"labels":[],"label_agreement":null},{"id":"W2969366465","doi":"10.1038/s41525-019-0093-8","title":"Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes","year":2019,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":275,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Center for Advancing Translational Sciences; National Institute on Deafness and Other Communication Disorders; Center for Scientific Review; National Institute of General Medical Sciences; National Institute of Mental Health; DNA Genotek; Simons Foundation; Simons Foundation Autism Research Initiative; Howard Hughes Medical Institute; Autism Speaks; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Autism; Genotyping; Exome sequencing; Genetics; Autism spectrum disorder; Exome; Gene; Biology; Medicine; Bioinformatics; Genotype; Mutation; Psychiatry","score_opus":0.15269424107546511,"score_gpt":0.36942398639519486,"score_spread":0.21672974531972974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969366465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.971539,0.0028286972,0.0031574925,0.00032851347,0.000053808064,0.00006262828,0.019589702,0.00010488022,0.0023352392],"genre_scores_gemma":[0.9793929,0.0010699237,0.00270077,0.00033026648,0.000036339585,0.0001180184,0.015341947,0.00005846174,0.0009513916],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975821,0.00065340335,0.00024022484,0.000900536,0.00045044563,0.00017323054],"domain_scores_gemma":[0.99764913,0.0011528246,0.0004037266,0.00036293626,0.0002618802,0.00016946757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018746725,0.0006498106,0.0007944548,0.0020105955,0.00088496215,0.0008224945,0.0004579504,0.00064400746,0.005128393],"category_scores_gemma":[0.005108843,0.00031117364,0.0012899615,0.0021545074,0.00032629888,0.00033061008,0.0011602433,0.00042763,0.0007538799],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017131453,0.0001747703,0.9115179,0.0006276667,0.0046437224,0.004133847,0.00088834815,0.0008623092,0.02510478,0.00057846704,0.008638505,0.041116685],"study_design_scores_gemma":[0.00021446538,0.00023928306,0.9730108,0.00016624776,0.0024854743,0.004647748,0.0005418246,0.0010460231,0.004044001,0.0008362552,0.012717438,0.00005053606],"about_ca_topic_score_codex":0.004971634,"about_ca_topic_score_gemma":0.0072855726,"teacher_disagreement_score":0.005128393,"about_ca_system_score_codex":0.00038866256,"about_ca_system_score_gemma":0.0004417072,"threshold_uncertainty_score":0.017156124},"labels":[],"label_agreement":null},{"id":"W2974125088","doi":"10.1038/s41525-019-0097-4","title":"A Mendelian randomization study of IL6 signaling in cardiovascular diseases, immune-related disorders and longevity","year":2019,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"IL-33, ST2, and ILC Pathways","field":"Immunology and Microbiology","cited_by":175,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; Government of Canada","keywords":"Mendelian randomization; Longevity; Medicine; Genome-wide association study; Rheumatoid arthritis; Disease; Internal medicine; Immune system; Stroke (engine); Coronary artery disease; Atrial fibrillation; Immunology; Single-nucleotide polymorphism; Biology; Gene; Genetics; Gerontology; Genotype","score_opus":0.005738613729857417,"score_gpt":0.20119292601049446,"score_spread":0.19545431228063703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2974125088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9725877,0.00028952703,0.025081849,0.00018099522,0.000069249385,0.00017339039,0.000571174,0.0001594597,0.0008866703],"genre_scores_gemma":[0.98947436,0.000059040827,0.009388152,0.000056961402,0.000018893956,0.00013742926,0.00019291749,0.000031144304,0.0006410866],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98783094,0.0086881695,0.000400669,0.0018830188,0.00086292607,0.00033426235],"domain_scores_gemma":[0.9908817,0.0052642263,0.001246082,0.0020547889,0.0002101785,0.00034312744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010096905,0.000793636,0.00090430066,0.0010454342,0.00059545814,0.0004713269,0.00064746395,0.0006691515,0.0041320054],"category_scores_gemma":[0.01137484,0.0003344587,0.0010737639,0.0007660164,0.0007501617,0.0002395395,0.0004569669,0.00063029723,0.0001996899],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.07405892,0.0017250546,0.66873735,0.0004203861,0.012144436,0.011308817,0.001233713,0.0068213567,0.11103265,0.037282668,0.0046471586,0.07058745],"study_design_scores_gemma":[0.00883359,0.022576392,0.6973932,0.00014470384,0.0070597045,0.027266288,0.00059230434,0.17925447,0.027246876,0.016142944,0.013235403,0.00025410805],"about_ca_topic_score_codex":0.001680624,"about_ca_topic_score_gemma":0.0009783113,"teacher_disagreement_score":0.010096905,"about_ca_system_score_codex":0.00039085472,"about_ca_system_score_gemma":0.0005252052,"threshold_uncertainty_score":0.053398192},"labels":[],"label_agreement":null},{"id":"W2978273148","doi":"10.1038/s41525-019-0098-3","title":"A large data resource of genomic copy number variation across neurodevelopmental disorders","year":2019,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":201,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Holland Bloorview Kids Rehabilitation Hospital; Toronto General Hospital; McMaster University; Children's Hospital of Eastern Ontario; McGill University; Memorial University of Newfoundland; Montreal Neurological Institute and Hospital; University of Alberta; Trillium Health Centre; Queen's University; Ontario Genomics; Credit Valley Hospital; University of Calgary; Mount Sinai Hospital; Children’s Health Research Institute; Centre for Addiction and Mental Health; Public Health Ontario; Amgen (Canada); Hamilton Health Sciences; Western University; University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"National Human Genome Research Institute; National Institute on Drug Abuse; National Cancer Institute; Autism Speaks; University of Toronto; National Institute on Alcohol Abuse and Alcoholism; National Institutes of Health; Alberta Innovates; National Institute of Mental Health; Hospital for Sick Children; Canadian Institutes of Health Research; Genome Canada; Sick Kids Foundation; GlaxoSmithKline; Government of Ontario","keywords":"Copy-number variation; Autism spectrum disorder; Autism; Etiology; Neurodevelopmental disorder; Schizophrenia (object-oriented programming); Intellectual disability; Population; Microarray; Genetics; Psychiatry; Medicine; Biology; Gene; Genome","score_opus":0.01083133010795031,"score_gpt":0.2609984659100707,"score_spread":0.2501671358021204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978273148","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08628844,0.004337164,0.0070167338,0.0004577493,0.00007341869,0.00019360193,0.89828295,0.0009388035,0.0024111527],"genre_scores_gemma":[0.13109237,0.001940723,0.014316452,0.00036403065,0.00010229106,0.0008928952,0.8503228,0.00022674967,0.0007417265],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99666023,0.00047965994,0.0007075518,0.0011987211,0.00078839326,0.00016543061],"domain_scores_gemma":[0.9812261,0.010263825,0.002672286,0.0025720233,0.0018399084,0.0014257914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026067062,0.0007448324,0.0016724134,0.010898831,0.00077214744,0.0013462398,0.0011523328,0.0010396987,0.0066114427],"category_scores_gemma":[0.01615864,0.00049039227,0.0007111185,0.011519215,0.00033561,0.00069186056,0.0019346965,0.0010811538,0.0025958994],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016812563,0.0003297029,0.5368924,0.0061207735,0.0029475775,0.0051972913,0.0009253981,0.0053696246,0.054558232,0.0035754372,0.17030476,0.21209754],"study_design_scores_gemma":[0.00035868288,0.00027167128,0.8145354,0.0006363612,0.0009708611,0.004454385,0.00041717265,0.00418992,0.011119428,0.003773738,0.15908234,0.00019008228],"about_ca_topic_score_codex":0.009026453,"about_ca_topic_score_gemma":0.011291012,"teacher_disagreement_score":0.010898831,"about_ca_system_score_codex":0.000674346,"about_ca_system_score_gemma":0.0019445645,"threshold_uncertainty_score":0.022117436},"labels":[],"label_agreement":null},{"id":"W2978809733","doi":"10.1038/s41525-019-0099-2","title":"Can one overcome “unhealthy genes”?","year":2019,"lang":"en","type":"editorial","venue":"npj Genomic Medicine","topic":"Lipid metabolism and disorders","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Heart and Stroke Foundation of Canada","keywords":"Gene; Computer science; Genetics; Biology; Computational biology","score_opus":0.019323069611447613,"score_gpt":0.28760715434423995,"score_spread":0.2682840847327923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978809733","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000018235747,0.007721311,0.00009312527,0.1377933,0.8532986,0.0000097507145,0.000027132708,0.000029955103,0.001008602],"genre_scores_gemma":[0.00027552876,0.0041108495,0.00010501607,0.093152754,0.89815086,0.000021138268,0.000013993531,0.000023635073,0.004146117],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9923316,0.0023481878,0.00096868386,0.00079101266,0.0029895667,0.0005709441],"domain_scores_gemma":[0.964353,0.020566925,0.002114311,0.00094972027,0.0074820886,0.0045339437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.011226406,0.0032486073,0.0040332573,0.0033649572,0.0049658865,0.009407469,0.004067556,0.03621851,0.01501534],"category_scores_gemma":[0.051282384,0.0014106386,0.0026087565,0.0014008791,0.0044915006,0.0069225044,0.0039819446,0.03692202,0.010074995],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018402532,0.000006937751,0.000017367247,0.00019851116,0.000018402428,0.00007168127,0.00001941607,0.000011156071,0.000019732439,0.0005631588,0.99487066,0.0041845785],"study_design_scores_gemma":[0.000085886786,0.000024896988,0.00015180657,0.00074369303,0.00008071026,0.00021418226,0.00006932299,0.00009274512,0.00005417757,0.0037460378,0.9947113,0.000025274881],"about_ca_topic_score_codex":0.0021261869,"about_ca_topic_score_gemma":0.007708286,"teacher_disagreement_score":0.03621851,"about_ca_system_score_codex":0.004234548,"about_ca_system_score_gemma":0.0047941343,"threshold_uncertainty_score":0.05937159},"labels":[],"label_agreement":null},{"id":"W2991031493","doi":"10.1038/s41525-019-0106-7","title":"Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A","year":2019,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Centre Hospitalier Universitaire Sainte-Justine","funders":"University College London Hospitals NHS Foundation Trust; European Regional Development Fund; Vlaamse regering; Universiteit Antwerpen; National Institutes of Health; European Molecular Biology Laboratory; Science Foundation Ireland; National Institute for Health and Care Research; Epilepsy Society; Fonds Wetenschappelijk Onderzoek; National Human Genome Research Institute; Wellcome Trust","keywords":"Dravet syndrome; Gene; Biology; Genetics; Exome sequencing; Exon; Phenotype; Genome; Epilepsy; Computational biology; Annotation; Genomics; Genotype-phenotype distinction; Exome; Human genome; Transcriptome; Bioinformatics; Neuroscience; Gene expression","score_opus":0.00814180693520452,"score_gpt":0.23263771575529904,"score_spread":0.22449590882009451,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2991031493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98594475,0.00064173434,0.0068068337,0.00015016018,0.000047402915,0.0000334427,0.0054797325,0.00017427526,0.0007217518],"genre_scores_gemma":[0.9693973,0.00056280143,0.015630668,0.00016511181,0.000041277206,0.00003298371,0.013352717,0.00010978739,0.0007073773],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99968123,0.000053547457,0.000040042058,0.00010046365,0.000084083054,0.000040625684],"domain_scores_gemma":[0.99927133,0.0003596486,0.00012329624,0.000106954314,0.000082135346,0.00005661491],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000306246,0.0003415097,0.00045020593,0.0009134071,0.00029609428,0.00044090647,0.00022094358,0.00037494017,0.0010279239],"category_scores_gemma":[0.0014131726,0.00012808926,0.00055180344,0.0008532404,0.00020151422,0.00016771782,0.0003844216,0.0004216563,0.0005400847],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013151965,0.00010323766,0.11170863,0.0005886791,0.00017857357,0.010309426,0.0011132805,0.0024936572,0.80855715,0.0005337112,0.0014099427,0.06168847],"study_design_scores_gemma":[0.00013539112,0.0005589496,0.6521004,0.0003012082,0.0011486392,0.024002675,0.0010752449,0.021586068,0.2500317,0.0015123128,0.047442608,0.000104856386],"about_ca_topic_score_codex":0.0013516878,"about_ca_topic_score_gemma":0.0041773734,"teacher_disagreement_score":0.0013516878,"about_ca_system_score_codex":0.00027857383,"about_ca_system_score_gemma":0.0003192931,"threshold_uncertainty_score":0.0034387112},"labels":[],"label_agreement":null},{"id":"W2992919418","doi":"10.1038/s41525-019-0104-9","title":"Reanalysing genomic data by normalized coverage values uncovers CNVs in bone marrow failure gene panels","year":2019,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Alberta; Centre hospitalier universitaire de Québec; Janeway Children's Health and Rehabilitation Centre; Princess Margaret Cancer Centre; Kingston General Hospital; Centre Hospitalier Universitaire de Sherbrooke; McMaster University; Izaak Walton Killam Health Centre; Alberta Children's Hospital; BC Children's Hospital; London Health Sciences Centre; Centre Hospitalier Universitaire Sainte-Justine; Population Health Research Institute; Children's Hospital of Eastern Ontario; University of Toronto; Royal University Hospital; Montreal Children's Hospital; University of Manitoba; Research Institute in Oncology and Hematology; CancerCare Manitoba; Hospital for Sick Children","funders":"Childhood Cancer Canada; C17 Council","keywords":"Bone marrow; Gene; Copy-number variation; Genetics; Computational biology; Biology; Genome; Immunology","score_opus":0.012587288489654371,"score_gpt":0.2516661540299086,"score_spread":0.23907886554025423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2992919418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898403,0.00077817385,0.007023206,0.000054877015,0.000014906545,0.000048119466,0.0013209932,0.00019093264,0.0007283476],"genre_scores_gemma":[0.9904276,0.00012534356,0.007572367,0.000039635932,0.0000062596037,0.00003572949,0.0015323993,0.000024600633,0.0002360968],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989874,0.00021646201,0.0001120939,0.00024494322,0.0003606037,0.00007859662],"domain_scores_gemma":[0.9991379,0.0004334956,0.00015548053,0.0000971335,0.00012618004,0.000049939234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00065267406,0.00039686263,0.00034595086,0.0026799047,0.00024413224,0.00057111774,0.00026358364,0.00024513868,0.0011972112],"category_scores_gemma":[0.0029251473,0.00013466776,0.0003813299,0.0011970784,0.00027899272,0.00017430134,0.0003243363,0.0002902101,0.0002763752],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006567269,0.00007267809,0.4688466,0.00021459779,0.00032749775,0.0025054438,0.00044607898,0.002369198,0.4641409,0.00041281263,0.0007657593,0.05924179],"study_design_scores_gemma":[0.000028428649,0.00030352583,0.8013347,0.00006879383,0.00027165655,0.009139583,0.00036718432,0.017264742,0.16516805,0.0006546689,0.0053613493,0.0000373163],"about_ca_topic_score_codex":0.0012349472,"about_ca_topic_score_gemma":0.0017273641,"teacher_disagreement_score":0.0026799047,"about_ca_system_score_codex":0.00027313564,"about_ca_system_score_gemma":0.00020688059,"threshold_uncertainty_score":0.0040050745},"labels":[],"label_agreement":null},{"id":"W3012698403","doi":"10.1038/s41525-020-0121-8","title":"Concurrent germline and somatic pathogenic BAP1 variants in a patient with metastatic bladder cancer","year":2020,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Medical Imaging and Pathology Studies","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Germline; Somatic cell; BAP1; Bladder cancer; Germline mutation; Cancer; Medicine; Cancer research; Oncology; Biology; Internal medicine; Genetics; Mutation; Gene","score_opus":0.048119850837233955,"score_gpt":0.3078326098765903,"score_spread":0.2597127590393563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012698403","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955486,0.00058707537,0.0005181821,0.0008549411,0.000046098336,0.000019927153,0.00017768856,0.00005185155,0.0021958218],"genre_scores_gemma":[0.99925715,0.000121811,0.00025751608,0.00010735051,0.000050058115,0.0000024270032,0.000034402638,0.0000053702543,0.00016391242],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99969363,0.000028008833,0.0000348066,0.00011212298,0.00005786775,0.0000735848],"domain_scores_gemma":[0.9991048,0.00024392486,0.00012992288,0.000051000272,0.000060837207,0.0004094372],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023269127,0.0007245837,0.0005455238,0.0016896961,0.0017644386,0.00075132964,0.0005815033,0.002076138,0.0020930464],"category_scores_gemma":[0.0019412736,0.0005265614,0.0004844245,0.00096610974,0.0007718414,0.0005251091,0.0007069046,0.0011785496,0.00034971753],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121665355,0.00007692425,0.08711916,0.000034192428,0.000030516692,0.9043421,0.00043723968,0.00028653172,0.0047765244,0.00018453767,0.00041983533,0.002170756],"study_design_scores_gemma":[0.000012545584,0.00015355895,0.049945533,0.00002230868,0.00004685602,0.9466713,0.00020571027,0.0009593957,0.001344945,0.00020389695,0.00041306074,0.000020904869],"about_ca_topic_score_codex":0.0046505784,"about_ca_topic_score_gemma":0.005686039,"teacher_disagreement_score":0.0046505784,"about_ca_system_score_codex":0.00086449366,"about_ca_system_score_gemma":0.0005182148,"threshold_uncertainty_score":0.009247065},"labels":[],"label_agreement":null},{"id":"W3015306422","doi":"10.1038/s41525-020-0123-6","title":"ATP7B variant c.1934T &gt; G p.Met645Arg causes Wilson disease by promoting exon 6 skipping","year":2020,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Trace Elements in Health","field":"Nursing","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Genomics","funders":"","keywords":"Minigene; Exon; Frameshift mutation; Genetics; Biology; Loss function; Exon skipping; Gene; RNA splicing; Alternative splicing; Mutation; Compound heterozygosity; Phenotype","score_opus":0.035558239055676434,"score_gpt":0.29906980896331126,"score_spread":0.2635115699076348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3015306422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99228764,0.0005679036,0.0033386685,0.000477031,0.00018465021,0.000043849905,0.00069150486,0.00015419145,0.002254547],"genre_scores_gemma":[0.99626786,0.00023078099,0.0010413205,0.00012237532,0.00003356465,0.00001320915,0.0003604779,0.000039509883,0.0018909635],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998591,0.00003754251,0.000019347654,0.00003138362,0.000033721288,0.000018971263],"domain_scores_gemma":[0.9998809,0.000043186734,0.000035019737,0.000010180465,0.000007896439,0.000022822056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014276119,0.00045556424,0.00026755576,0.00031991286,0.0002585193,0.00015007847,0.00019951709,0.00059100945,0.0032438445],"category_scores_gemma":[0.00020574378,0.00011350789,0.0002522781,0.00022161324,0.0003695974,0.00006262169,0.00015971977,0.00040088347,0.00081750425],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004517502,0.00011985975,0.0062100464,0.000074303185,0.000048348393,0.021065785,0.00008446363,0.00018547836,0.96669376,0.00027345968,0.0006478735,0.004144884],"study_design_scores_gemma":[0.00029774508,0.0013664557,0.08998531,0.000054296168,0.00027264893,0.08699994,0.0003399636,0.0045528985,0.7960178,0.0009375825,0.01911212,0.000063207895],"about_ca_topic_score_codex":0.0013552106,"about_ca_topic_score_gemma":0.0013084294,"teacher_disagreement_score":0.0032438445,"about_ca_system_score_codex":0.0001692422,"about_ca_system_score_gemma":0.00013583645,"threshold_uncertainty_score":0.010851681},"labels":[],"label_agreement":null},{"id":"W3022061183","doi":"10.1038/s41525-020-0128-1","title":"Genes and genomes and unnecessary complexity in precision medicine","year":2020,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Contingency; Relevance (law); Biology; Organism; Precision medicine; Computational biology; Evolutionary biology; Computer science; Genetics; Epistemology","score_opus":0.06316977983296768,"score_gpt":0.3450122506251048,"score_spread":0.28184247079213715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3022061183","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012951054,0.6056755,0.0761874,0.25774518,0.0068108793,0.00006213379,0.00021247269,0.000289147,0.04006616],"genre_scores_gemma":[0.43063694,0.36489946,0.07943917,0.10414108,0.012054473,0.0003162731,0.00028331202,0.0001827029,0.008046523],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.99445915,0.00309845,0.00029603054,0.00073410035,0.0010959562,0.00031626452],"domain_scores_gemma":[0.9917429,0.0061313836,0.0004983318,0.000798462,0.00052557886,0.0003033161],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009196687,0.00072455057,0.0016724038,0.0014766994,0.0019532617,0.0057607847,0.0017293493,0.006294082,0.0018780839],"category_scores_gemma":[0.0094098775,0.0004358852,0.00075277366,0.0013684402,0.033291806,0.010455855,0.004001384,0.0078852,0.0006032772],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045787678,0.000012982852,0.00074899,0.00053245306,0.00005267978,0.00037924832,0.0015180664,0.0011120334,0.00072222156,0.9522627,0.0072393315,0.035373416],"study_design_scores_gemma":[0.000011704667,0.000031424504,0.0004343268,0.00038042478,0.000020637859,0.0004715782,0.0004595276,0.000326322,0.0003747428,0.8962107,0.101247124,0.00003150925],"about_ca_topic_score_codex":0.0012863709,"about_ca_topic_score_gemma":0.0012677677,"teacher_disagreement_score":0.009196687,"about_ca_system_score_codex":0.0033371195,"about_ca_system_score_gemma":0.0033309385,"threshold_uncertainty_score":0.04863727},"labels":[],"label_agreement":null},{"id":"W3039768613","doi":"10.1038/s41525-020-0132-5","title":"metPropagate: network-guided propagation of metabolomic information for prioritization of metabolic disease genes","year":2020,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary; BC Children's Hospital; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Children's Hospital Foundation; Government of Canada; Canadian Institutes of Health Research; Rare Disease Foundation; BC Children's Hospital","keywords":"Prioritization; Metabolomics; Computational biology; Computer science; Gene; Disease; Metabolic network; Biology; Bioinformatics; Medicine; Genetics; Internal medicine; Engineering","score_opus":0.020987884635528226,"score_gpt":0.25793411692520174,"score_spread":0.23694623228967351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3039768613","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1862124,0.001137593,0.7663376,0.0011911558,0.00036485653,0.00046846407,0.006197319,0.03385534,0.004235265],"genre_scores_gemma":[0.51725465,0.00037545236,0.46581593,0.0005845239,0.00019379656,0.00045201424,0.008949708,0.0018934221,0.004480433],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99952686,0.00013532418,0.00002241192,0.00013807826,0.00013121075,0.00004621603],"domain_scores_gemma":[0.99826187,0.0009832191,0.00020933193,0.00013617073,0.00029361062,0.00011590468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013396639,0.0018643768,0.0009632789,0.0025802683,0.0007646953,0.0012638969,0.0012545813,0.0010669556,0.004971585],"category_scores_gemma":[0.005375372,0.0005249545,0.001215642,0.0008955794,0.00036853572,0.00091162167,0.0011924327,0.0012606508,0.001086555],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020583782,0.0005985286,0.0370161,0.0008659466,0.0010550319,0.0008966334,0.00044940488,0.44115105,0.054592934,0.00823064,0.041103926,0.41198146],"study_design_scores_gemma":[0.000103110004,0.00011253074,0.0017905586,0.00001963478,0.000073010386,0.00009610543,0.000029012734,0.9867949,0.0055174343,0.003336646,0.0021019995,0.000025097464],"about_ca_topic_score_codex":0.008012972,"about_ca_topic_score_gemma":0.0145050455,"teacher_disagreement_score":0.008012972,"about_ca_system_score_codex":0.00090891134,"about_ca_system_score_gemma":0.0013198043,"threshold_uncertainty_score":0.016631663},"labels":[],"label_agreement":null},{"id":"W3046490424","doi":"10.1038/s41525-020-0135-2","title":"A systematic comparison of pharmacogene star allele calling bioinformatics algorithms: a focus on CYP2D6 genotyping","year":2020,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Pharmacogenetics and Drug Metabolism","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"National Research Foundation; GlaxoSmithKline","keywords":"Genotyping; Focus (optics); Allele; CYP2D6; Star (game theory); Algorithm; Biology; Genetics; Computational biology; Bioinformatics; Computer science; Genotype; Mathematics; Gene; Physics","score_opus":0.18967526254272118,"score_gpt":0.44300636623285133,"score_spread":0.2533311036901301,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046490424","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87884456,0.0072891675,0.10045797,0.00083931646,0.0002585877,0.00046395615,0.0031339151,0.005677772,0.0030347223],"genre_scores_gemma":[0.7998347,0.0017879227,0.18450342,0.00048289518,0.00005604685,0.00039587717,0.010709321,0.0016830253,0.00054674206],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9884792,0.0071224705,0.00090165867,0.0015992253,0.0016458804,0.00025151586],"domain_scores_gemma":[0.96877265,0.022567516,0.0009843477,0.003019217,0.0043463376,0.00030999977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.020151984,0.00092752057,0.0013710506,0.0018700921,0.00064478593,0.0013440357,0.0014427127,0.001057088,0.00094953727],"category_scores_gemma":[0.037626572,0.00047476287,0.0016498679,0.001823814,0.0005387879,0.0012090079,0.0014135662,0.001042313,0.00044584292],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007983075,0.0010195519,0.18526934,0.0031800454,0.006003886,0.00032060262,0.0012132335,0.27491418,0.024280643,0.005430366,0.016613621,0.47377145],"study_design_scores_gemma":[0.0011663006,0.003032402,0.092263795,0.0007061561,0.0016782279,0.0007124524,0.000551538,0.85187924,0.022048453,0.0071507213,0.018552572,0.00025814687],"about_ca_topic_score_codex":0.0033404294,"about_ca_topic_score_gemma":0.0036479533,"teacher_disagreement_score":0.020151984,"about_ca_system_score_codex":0.00067571725,"about_ca_system_score_gemma":0.0015477916,"threshold_uncertainty_score":0.10657519},"labels":[],"label_agreement":null},{"id":"W3089445602","doi":"10.1038/s41525-020-00148-7","title":"Early-onset renal cell carcinoma in PTEN harmatoma tumour syndrome","year":2020,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"PI3K/AKT/mTOR signaling in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; Princess Margaret Cancer Centre; University Health Network","funders":"","keywords":"Medicine; Cowden syndrome; PTEN; Kidney cancer; Renal cell carcinoma; Cancer; Kidney; Birt–Hogg–Dubé syndrome; Kidney stones; Colorectal cancer; Oncology; Internal medicine; Thyroid cancer; Endometrial cancer; Thyroid; Pathology; Surgery; PI3K/AKT/mTOR pathway; Biology","score_opus":0.016513010127425745,"score_gpt":0.23926427110992954,"score_spread":0.2227512609825038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3089445602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943453,0.00067907106,0.00071574346,0.000632831,0.00003495923,0.00003110059,0.000070158014,0.00004115105,0.0034497634],"genre_scores_gemma":[0.9984835,0.00030069257,0.0005160695,0.00016440758,0.000034966928,0.000005515045,0.000030081717,0.000004925052,0.0004599506],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9998115,0.00002794908,0.000017339553,0.00004472089,0.000036993057,0.00006165535],"domain_scores_gemma":[0.99966216,0.00010171905,0.000064619955,0.000017159216,0.000031150543,0.0001233081],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023490659,0.0003559839,0.0002622736,0.001128933,0.00067728525,0.00038125503,0.00034809564,0.0010173992,0.0013013794],"category_scores_gemma":[0.0015907004,0.00015727407,0.000319192,0.00042769665,0.00047619236,0.00036076267,0.0004365083,0.0004951438,0.00017340586],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028869434,0.00011635929,0.37510413,0.000075993354,0.00004311556,0.59142566,0.00056927337,0.00034144334,0.017171174,0.0010000062,0.00077584444,0.013088252],"study_design_scores_gemma":[0.000027797778,0.00028467938,0.341672,0.000048521215,0.000073104246,0.6476827,0.0004505021,0.0009343402,0.0058351285,0.0007437557,0.002209986,0.00003747098],"about_ca_topic_score_codex":0.0059010684,"about_ca_topic_score_gemma":0.006548444,"teacher_disagreement_score":0.0059010684,"about_ca_system_score_codex":0.00041885377,"about_ca_system_score_gemma":0.00050220004,"threshold_uncertainty_score":0.011733413},"labels":[],"label_agreement":null},{"id":"W3094167758","doi":"10.1038/s41525-020-00154-9","title":"Best practices for the analytical validation of clinical whole-genome sequencing intended for the diagnosis of germline disease","year":2020,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Germline; Genome; Disease; Computational biology; Medicine; Genetics; Biology; Internal medicine; Gene","score_opus":0.25427605164025624,"score_gpt":0.4669763341891907,"score_spread":0.21270028254893447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3094167758","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00018137459,0.96511614,0.005340493,0.019662114,0.0027765455,0.000114123904,0.00020675694,0.00012954226,0.006472932],"genre_scores_gemma":[0.002061145,0.971764,0.015835857,0.007257635,0.00093210756,0.00021799935,0.00050863734,0.000041772524,0.0013807763],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9853454,0.0056423848,0.0027545665,0.0011929128,0.0045374385,0.0005273001],"domain_scores_gemma":[0.95665354,0.026413418,0.0028982488,0.0018015589,0.011215686,0.0010174906],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.033337884,0.0016799074,0.0024572273,0.0057045897,0.00069668196,0.0033900589,0.0050444137,0.0056766733,0.0035218468],"category_scores_gemma":[0.038706437,0.00081502384,0.0024344965,0.0031976951,0.0028773383,0.0042312075,0.0027248983,0.007350661,0.0038716577],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007394091,0.00008967746,0.00043077747,0.022021106,0.00020101486,0.00028108852,0.0002661057,0.0006837758,0.0008669134,0.022462072,0.07671275,0.87591076],"study_design_scores_gemma":[0.000032248983,0.00006660811,0.0006692971,0.027266836,0.0002054343,0.0005881942,0.00012668721,0.00015505544,0.0006658573,0.008851999,0.9613219,0.00005003817],"about_ca_topic_score_codex":0.0052140155,"about_ca_topic_score_gemma":0.005581579,"teacher_disagreement_score":0.9666621,"about_ca_system_score_codex":0.003498927,"about_ca_system_score_gemma":0.01404094,"threshold_uncertainty_score":0.17630965},"labels":[],"label_agreement":null},{"id":"W3111855133","doi":"10.1038/s41525-020-00162-9","title":"Missense variant contribution to USP9X-female syndrome","year":2020,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kingston General Hospital; Kingston Health Sciences Centre","funders":"National Eye Institute; National Human Genome Research Institute; National Institute of Mental Health; Medical Research Council; Ministero dell’Istruzione, dell’Università e della Ricerca; Simons Foundation Autism Research Initiative; Agence Nationale de la Recherche; Dipartimenti di Eccellenza; National Health and Medical Research Council; Broad Institute","keywords":"Missense mutation; Loss function; Genetics; Phenotype; Biology; Pathogenicity; Gene","score_opus":0.013518417642224953,"score_gpt":0.23250004629595472,"score_spread":0.21898162865372978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3111855133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955829,0.00049281836,0.0014605583,0.00010561448,0.000029655575,0.000017938672,0.0007483894,0.000055176435,0.0015069762],"genre_scores_gemma":[0.99727505,0.000328007,0.0009946614,0.00005832,0.000030335214,0.000007638103,0.0005651833,0.000033856286,0.0007068936],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99968493,0.0000314193,0.00004086804,0.00010072717,0.000112380214,0.000029636194],"domain_scores_gemma":[0.99954236,0.00015511508,0.00012317828,0.000051181192,0.000044074597,0.000084092695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028692547,0.00059734046,0.00038702518,0.00072294316,0.00033479396,0.0003496064,0.0002235261,0.00038272055,0.005528924],"category_scores_gemma":[0.0016504634,0.00011587293,0.0003544188,0.00033083992,0.00034660203,0.00017365007,0.0005683017,0.00034488557,0.00054582756],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007644625,0.000111549714,0.60862863,0.00018409653,0.00024083664,0.16838278,0.00140612,0.0010266465,0.14052445,0.001819488,0.0021260756,0.074784845],"study_design_scores_gemma":[0.000047281297,0.00077115145,0.4328113,0.00009870493,0.00022193704,0.50094897,0.0006942498,0.0018932514,0.0454787,0.0009858292,0.015990483,0.000058210146],"about_ca_topic_score_codex":0.00079918746,"about_ca_topic_score_gemma":0.0009263883,"teacher_disagreement_score":0.005528924,"about_ca_system_score_codex":0.00013739722,"about_ca_system_score_gemma":0.00018432054,"threshold_uncertainty_score":0.018496096},"labels":[],"label_agreement":null},{"id":"W3112204464","doi":"10.1038/s41525-020-00164-7","title":"Clinical utility of genomic sequencing: a measurement toolkit","year":2020,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Clinical Evaluative Sciences; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Context (archaeology); Reimbursement; Precision medicine; Stakeholder; Medicine; Health care; Data science; Computer science","score_opus":0.16936083004958008,"score_gpt":0.37722716154521263,"score_spread":0.20786633149563255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3112204464","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007459586,0.0043048174,0.91430503,0.03896981,0.00051566184,0.0049869814,0.002899815,0.0057746707,0.020783626],"genre_scores_gemma":[0.051052686,0.0019593793,0.93736106,0.0020511043,0.00020502096,0.004161395,0.0020702889,0.00048627786,0.00065288605],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.66340536,0.22399583,0.05412132,0.012331061,0.043812368,0.0023340588],"domain_scores_gemma":[0.37621272,0.44921207,0.026162025,0.0626935,0.07889004,0.006829666],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.328677,0.002245848,0.0035656386,0.01627233,0.002862918,0.01892529,0.006195353,0.0038289677,0.0034586505],"category_scores_gemma":[0.42667875,0.0017437513,0.00377314,0.011849312,0.010342292,0.012332185,0.022394149,0.010891457,0.0025679583],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028222537,0.00031538744,0.021584224,0.0071382117,0.0010156045,0.00047831843,0.010960884,0.014763211,0.0022072822,0.26898438,0.04490835,0.627362],"study_design_scores_gemma":[0.00023261397,0.0007270774,0.031996995,0.016592123,0.001045436,0.0015419836,0.0055740713,0.043196786,0.004794478,0.5905456,0.30298978,0.00076301553],"about_ca_topic_score_codex":0.006246425,"about_ca_topic_score_gemma":0.0053914213,"teacher_disagreement_score":0.328677,"about_ca_system_score_codex":0.009679381,"about_ca_system_score_gemma":0.042752396,"threshold_uncertainty_score":0.8278608},"labels":[],"label_agreement":null},{"id":"W3127175417","doi":"10.1038/s41525-021-00174-z","title":"Convergence of biomarkers and risk factor trait loci of coronary artery disease at 3p21.31 and HLA region","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; Government of Canada; Compute Canada","keywords":"SNP; Single-nucleotide polymorphism; Biology; Human leukocyte antigen; Locus (genetics); Coronary artery disease; Quantitative trait locus; Genome-wide association study; Genetics; Disease; Risk factor; Expression quantitative trait loci; Methylation; Computational biology; Bioinformatics; Oncology; Gene; Internal medicine; Medicine; Antigen","score_opus":0.014789595740628889,"score_gpt":0.2409311281128946,"score_spread":0.22614153237226572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127175417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99016386,0.0009556996,0.0068016783,0.00013785368,0.00001383491,0.0000275841,0.0009238309,0.00007663324,0.00089914276],"genre_scores_gemma":[0.99346066,0.00027598624,0.004585342,0.00006115946,0.000015385629,0.0000334531,0.00088684,0.000015129988,0.0006660304],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995838,0.00009205996,0.000026647567,0.0001350628,0.00010753328,0.000054964017],"domain_scores_gemma":[0.99913496,0.00033056,0.00028751174,0.00007825131,0.00007256468,0.00009621312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040741637,0.0003320609,0.00057123427,0.0012783568,0.00035347213,0.00046656135,0.00022386179,0.00044147717,0.0036583915],"category_scores_gemma":[0.0011677953,0.00015809455,0.0005752737,0.0011302717,0.00019941363,0.00020888768,0.00044289706,0.00049173285,0.00040614602],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001680872,0.000111942725,0.5202243,0.00021810418,0.0006792366,0.002974121,0.0004247718,0.0015504129,0.42046165,0.0008414662,0.0004328191,0.05040032],"study_design_scores_gemma":[0.00003299111,0.00022540645,0.9683211,0.000021956957,0.00020426114,0.003720828,0.00012858691,0.0027705142,0.021004258,0.0012486746,0.0023024403,0.000019091023],"about_ca_topic_score_codex":0.0012958278,"about_ca_topic_score_gemma":0.0013344403,"teacher_disagreement_score":0.0036583915,"about_ca_system_score_codex":0.00020786724,"about_ca_system_score_gemma":0.00025027432,"threshold_uncertainty_score":0.0122385025},"labels":[],"label_agreement":null},{"id":"W3130601884","doi":"10.1038/s41525-021-00176-x","title":"Rare versus common diseases: a false dichotomy in precision medicine","year":2021,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Common cause and special cause; Precision medicine; Common knowledge (logic); Set (abstract data type); Common good; Common sense; Biology; Political science; Computer science; Genetics; Economics; Law; Operations management; Artificial intelligence; Politics","score_opus":0.037863772619546036,"score_gpt":0.35234436449165785,"score_spread":0.3144805918721118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3130601884","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006180768,0.986547,0.00062538486,0.010257398,0.0014586669,0.0000034209686,0.000015908443,0.000014389718,0.0010160342],"genre_scores_gemma":[0.0014426957,0.9857453,0.0008262371,0.008259149,0.0030243213,0.000010508698,0.000031128944,0.000008581073,0.00065200427],"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.99727136,0.0010123205,0.00030054903,0.00035282937,0.0009231422,0.00013982787],"domain_scores_gemma":[0.9871262,0.010287247,0.0004452923,0.00034219064,0.0014626557,0.000336367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006491931,0.0009558089,0.0023741752,0.0032493656,0.000763747,0.0034203094,0.002198486,0.0048482274,0.0027467336],"category_scores_gemma":[0.008687986,0.00041530092,0.0011479722,0.0029043506,0.006354517,0.00680937,0.0022468304,0.01023187,0.001664192],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000108006745,0.00004386373,0.00035974517,0.012607679,0.00023508105,0.0005718234,0.00033555515,0.00055326644,0.0007842666,0.120096296,0.11096988,0.7533346],"study_design_scores_gemma":[0.000020031635,0.00006264542,0.0005555722,0.007949701,0.00008182902,0.0020965626,0.00022329831,0.00015432194,0.00021762028,0.056301214,0.93228704,0.000050109258],"about_ca_topic_score_codex":0.001883444,"about_ca_topic_score_gemma":0.002815321,"teacher_disagreement_score":0.006491931,"about_ca_system_score_codex":0.003595476,"about_ca_system_score_gemma":0.0031087159,"threshold_uncertainty_score":0.03433299},"labels":[],"label_agreement":null},{"id":"W3130785851","doi":"10.1038/s41525-021-00173-0","title":"Whole exome sequencing uncovered highly penetrant recessive mutations for a spectrum of rare genetic pediatric diseases in Bangladesh","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Memorial University of Newfoundland; SickKids Foundation; Hospital for Sick Children","funders":"Mohammed Bin Rashid University of Medicine and Health Sciences; Al Jalila Foundation","keywords":"Sanger sequencing; Genetics; Exome sequencing; Compound heterozygosity; Genetic heterogeneity; Biology; Mucolipidosis; Exome; Massive parallel sequencing; Hereditary spastic paraplegia; Population; Mutation; Gene; Medicine; DNA sequencing; Phenotype","score_opus":0.01240553780156954,"score_gpt":0.239089852696378,"score_spread":0.22668431489480848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3130785851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993548,0.00037108417,0.0012217216,0.00015712064,0.00000784047,0.000022646082,0.0026875918,0.000028821167,0.0019552535],"genre_scores_gemma":[0.99522865,0.0005515778,0.0015063366,0.00013575658,0.0000044591347,0.000022982582,0.0015629996,0.000016489543,0.0009707454],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998022,0.000024190225,0.000029293686,0.00007399209,0.000043590142,0.00002676733],"domain_scores_gemma":[0.9998381,0.0000612699,0.00003724222,0.000017271062,0.000019737907,0.000026337259],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018248819,0.0005051098,0.00024746044,0.00061625696,0.0003413917,0.00036500845,0.00018123016,0.00046159115,0.0029775286],"category_scores_gemma":[0.00062048144,0.00013375298,0.00019550686,0.00068282586,0.00027212763,0.00016049224,0.00047461648,0.00028330125,0.0005233984],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004527609,0.00006385079,0.56901544,0.0003258518,0.0001589591,0.06338715,0.0032250443,0.0011540685,0.31185108,0.00069914194,0.001616006,0.04805057],"study_design_scores_gemma":[0.00005652136,0.0002411588,0.8380431,0.00016564963,0.0002283725,0.083024636,0.0036308605,0.0013455102,0.05185344,0.0007803724,0.02055807,0.000072321294],"about_ca_topic_score_codex":0.004028085,"about_ca_topic_score_gemma":0.005115595,"teacher_disagreement_score":0.004028085,"about_ca_system_score_codex":0.00028597072,"about_ca_system_score_gemma":0.0002702021,"threshold_uncertainty_score":0.009960771},"labels":[],"label_agreement":null},{"id":"W3131318507","doi":"10.1038/s41525-021-00175-y","title":"Please give me a copy of my child’s raw genomic data","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Ethics in Clinical Research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Raw data; Context (archaeology); Work (physics); Data science; Computer science; Biology; Engineering","score_opus":0.5070477052867648,"score_gpt":0.5624044164853002,"score_spread":0.05535671119853536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3131318507","genre_codex":"other","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024121819,0.0062657427,0.10522438,0.17748794,0.022338599,0.0027144488,0.27190587,0.018047486,0.37189376],"genre_scores_gemma":[0.11810313,0.01097711,0.23307875,0.060503706,0.0076877833,0.0054351464,0.10876081,0.016721811,0.4387318],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983309,0.0006699954,0.00017118258,0.00018245888,0.0005253103,0.000120229335],"domain_scores_gemma":[0.97505754,0.0141698355,0.0010388806,0.0037640815,0.004385934,0.0015836958],"candidate_categories":["open_science","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.004364582,0.0006493169,0.0006699861,0.0020185835,0.0011210851,0.0018167044,0.0012476209,0.002143142,0.35093603],"category_scores_gemma":[0.05752688,0.00038555329,0.0004964371,0.0015964714,0.00083638314,0.0021318153,0.0027508368,0.0020648185,0.17830569],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018139869,0.00006637025,0.0021594896,0.00025751162,0.000013231862,0.0015778486,0.0005941139,0.000087845,0.00073663966,0.0031090314,0.9034994,0.08771714],"study_design_scores_gemma":[0.000032392978,0.000053821037,0.002700217,0.00046676816,0.0000123946675,0.002979888,0.000595451,0.00013057521,0.001127088,0.0049239644,0.9869306,0.00004682314],"about_ca_topic_score_codex":0.0025142315,"about_ca_topic_score_gemma":0.003670519,"teacher_disagreement_score":0.99875236,"about_ca_system_score_codex":0.0007780119,"about_ca_system_score_gemma":0.0016149728,"threshold_uncertainty_score":0.925811},"labels":[],"label_agreement":null},{"id":"W3136215211","doi":"10.1038/s41525-021-00191-y","title":"Author Correction: Please give me a copy of my child’s raw genomic data","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Hospital for Sick Children; Public Health Ontario; University of Toronto","funders":"","keywords":"Raw data; Computer science; Computational biology; Biology; Genetics; Programming language","score_opus":0.02175023533062496,"score_gpt":0.2830526604571201,"score_spread":0.2613024251264951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3136215211","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00088306237,0.0018357816,0.00602639,0.12534663,0.8390747,0.00007966944,0.013718517,0.0027501478,0.010285102],"genre_scores_gemma":[0.042323567,0.0132692065,0.03231504,0.1692614,0.19842915,0.0007559556,0.03677207,0.015242439,0.4916312],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99410266,0.0009907596,0.0008857255,0.000831673,0.0027979673,0.0003913134],"domain_scores_gemma":[0.9504357,0.016741471,0.0024657676,0.0043525896,0.024199031,0.0018054692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0039533074,0.0012798852,0.0011309938,0.002872606,0.0021672824,0.00388515,0.0028016677,0.0039881184,0.14306544],"category_scores_gemma":[0.104952656,0.00093570095,0.0012248129,0.002481743,0.002044955,0.0019699736,0.002597636,0.009412296,0.080497295],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021772652,0.0000035979888,0.00012110964,0.00008040006,0.000009265068,0.00030538332,0.00006040471,0.000027647906,0.00008681918,0.0007082355,0.99209666,0.006478595],"study_design_scores_gemma":[0.00002181874,0.000010359518,0.00051891635,0.0003360824,0.00001712463,0.0013048255,0.00009143075,0.00008170616,0.0003218903,0.0014678839,0.9957975,0.000030442105],"about_ca_topic_score_codex":0.008298921,"about_ca_topic_score_gemma":0.010146534,"teacher_disagreement_score":0.14306544,"about_ca_system_score_codex":0.002393534,"about_ca_system_score_gemma":0.0047495905,"threshold_uncertainty_score":0.47860157},"labels":[],"label_agreement":null},{"id":"W3160760496","doi":"10.1038/s41525-021-00196-7","title":"STAT1 gain-of-function heterozygous cell models reveal diverse interferon-signature gene transcriptional responses","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cytokine Signaling Pathways and Interactions","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children; Canadian Child Health Clinician Scientist Program; Immunodeficiency Canada","keywords":"STAT1; Biology; STAT protein; Phenotype; Interferon; Gene; Genotype; Genetics; Gene expression; Transcription factor; Allele; Cancer research; Immunology; STAT3","score_opus":0.05490428086698669,"score_gpt":0.2822143242298275,"score_spread":0.22731004336284083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3160760496","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98261225,0.00031949655,0.013280548,0.0001322997,0.000062050036,0.00009484854,0.0019279907,0.00025215707,0.0013183785],"genre_scores_gemma":[0.9899211,0.0002968872,0.005399136,0.0000627779,0.000009343239,0.00009289412,0.0012995511,0.00008923127,0.0028291107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996345,0.00004685665,0.000057673376,0.00008943547,0.00011486184,0.000056601846],"domain_scores_gemma":[0.9997477,0.000055574907,0.00007822391,0.00004162523,0.00001657099,0.000060376467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021595045,0.00053057476,0.0002632948,0.00056780933,0.00021026988,0.000388492,0.00031088572,0.0004813553,0.0016048593],"category_scores_gemma":[0.00019778495,0.00019639284,0.00034149326,0.00021728406,0.00041618454,0.00018208235,0.00032485463,0.000812064,0.0005755397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013386749,0.000053246727,0.00058439,0.000029684496,0.000009363732,0.0002684779,0.000047322457,0.00043144537,0.9966118,0.0005009147,0.00009341421,0.0012360952],"study_design_scores_gemma":[0.000039556893,0.0005848598,0.0063332543,0.000016325625,0.000048504913,0.0020058258,0.00013065289,0.0068319384,0.9793042,0.000391533,0.0042898245,0.000023610995],"about_ca_topic_score_codex":0.0005865026,"about_ca_topic_score_gemma":0.0013046974,"teacher_disagreement_score":0.0016048593,"about_ca_system_score_codex":0.00027649722,"about_ca_system_score_gemma":0.00020754404,"threshold_uncertainty_score":0.005368769},"labels":[],"label_agreement":null},{"id":"W3163464093","doi":"10.1038/s41525-021-00199-4","title":"Transcriptome-wide association study uncovers the role of essential genes in anthracycline-induced cardiotoxicity","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Chemotherapy-induced cardiotoxicity and mitigation","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; University of British Columbia; Government of Canada","keywords":"Cardiotoxicity; Genome-wide association study; Transcriptome; Anthracycline; Biology; Gene; Cardiomyopathy; Genetics; Genetic association; Candidate gene; Pharmacogenetics; Computational biology; Single-nucleotide polymorphism; Gene expression; Cancer research; Bioinformatics; Internal medicine; Medicine; Genotype; Heart failure; Cancer; Chemotherapy","score_opus":0.01357389050185894,"score_gpt":0.27637128996263033,"score_spread":0.2627973994607714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3163464093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996527,0.00062705483,0.0013664187,0.00010451941,0.000010751718,0.000005250363,0.00093570806,0.000028903283,0.00039424488],"genre_scores_gemma":[0.99840975,0.00015696375,0.0005224063,0.00004461792,0.0000062733907,0.0000052731907,0.0006562787,0.0000054564384,0.00019296784],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99981636,0.000044273842,0.000016023045,0.00006724942,0.00003100933,0.000025179148],"domain_scores_gemma":[0.9996419,0.0001200955,0.00013077311,0.00003726145,0.000025322768,0.000044721324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003080651,0.00017572044,0.0002474317,0.0004127564,0.00017071205,0.00031463348,0.00012524457,0.00019601734,0.0015967231],"category_scores_gemma":[0.00059554126,0.0000993189,0.00035887072,0.0006045028,0.00015484927,0.000084030005,0.00025433142,0.0003247057,0.0001303352],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017277073,0.000118569595,0.6976826,0.00015455265,0.00091302965,0.00076196983,0.00009925301,0.0010547956,0.28177884,0.00038787653,0.0008837526,0.01443706],"study_design_scores_gemma":[0.000019895377,0.000087958826,0.99162626,0.0000068014283,0.00022564452,0.00046316866,0.000050671217,0.0012017142,0.005422993,0.00019431877,0.00069515867,0.0000052994133],"about_ca_topic_score_codex":0.0006424387,"about_ca_topic_score_gemma":0.0011811306,"teacher_disagreement_score":0.0015967231,"about_ca_system_score_codex":0.000114031114,"about_ca_system_score_gemma":0.00014305305,"threshold_uncertainty_score":0.00534153},"labels":[],"label_agreement":null},{"id":"W3173018004","doi":"10.1038/s41525-021-00218-4","title":"Genetic discrimination: introducing the Asian perspective to the debate","year":2021,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Biomedical Ethics and Regulation","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"National Research Foundation of Korea; National Research Foundation; Genome Canada","keywords":"Legislation; Perspective (graphical); Corporate governance; Business; Political science; Action (physics); Public economics; Public relations; Public administration; Economics; Law; Finance; Computer science","score_opus":0.06270221809707852,"score_gpt":0.3774289192760651,"score_spread":0.3147267011789866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3173018004","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0031990916,0.85131985,0.0013957454,0.100576326,0.0027791578,0.0000073222272,0.00001858151,0.000009978696,0.040693983],"genre_scores_gemma":[0.12224205,0.7749195,0.0012864406,0.093031466,0.0037565774,0.000038650993,0.000029399609,0.000019818464,0.004676137],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.99681747,0.0020385273,0.00017562088,0.00019458192,0.0005268277,0.0002469305],"domain_scores_gemma":[0.996516,0.0024548727,0.00036336773,0.00011179175,0.000384622,0.0001692307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0072996635,0.00042757762,0.00057755696,0.0015969055,0.0013406766,0.004415885,0.0009612019,0.0034720497,0.0018951973],"category_scores_gemma":[0.004257161,0.00012930084,0.00048697484,0.0024299175,0.0074238884,0.005098478,0.0029031385,0.0064986423,0.0003457794],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003733904,0.000027997512,0.0006511576,0.0035124335,0.00006140681,0.0007539353,0.010029068,0.00037595644,0.00043195923,0.80629194,0.02388285,0.15394405],"study_design_scores_gemma":[0.000009804868,0.000039367562,0.0013615002,0.010318429,0.00006946121,0.0010471889,0.008606801,0.00014988663,0.00027722496,0.073866434,0.90422577,0.000028159186],"about_ca_topic_score_codex":0.005196463,"about_ca_topic_score_gemma":0.006745708,"teacher_disagreement_score":0.0072996635,"about_ca_system_score_codex":0.0033687283,"about_ca_system_score_gemma":0.0077726115,"threshold_uncertainty_score":0.038604736},"labels":[],"label_agreement":null},{"id":"W3184751628","doi":"10.1038/s41525-021-00224-6","title":"Incidental findings from cancer next generation sequencing panels","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Mount Sinai Hospital; London Health Sciences Centre; Grand River Hospital; Princess Margaret Cancer Centre; Hospital for Sick Children; Toronto General Hospital; University Health Network; University of Toronto","funders":"","keywords":"Germline; CHEK2; Malignancy; Cancer; DNA sequencing; Genetic testing; Genetics; Medicine; Biology; Bioinformatics; Oncology; Internal medicine; Germline mutation; Computational biology; Gene; Mutation","score_opus":0.12478177457246009,"score_gpt":0.3403662857436202,"score_spread":0.21558451117116012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3184751628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85405374,0.013680649,0.08668939,0.0029760867,0.00057603774,0.0008198273,0.004709168,0.0027282569,0.03376691],"genre_scores_gemma":[0.9197873,0.0053103846,0.06427919,0.0018553138,0.0003081822,0.00018218909,0.0031728009,0.00030885453,0.0047957213],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99791926,0.00047536555,0.0003949132,0.00025676546,0.0007623212,0.00019133047],"domain_scores_gemma":[0.99615014,0.0019733196,0.0005993962,0.00038413628,0.00064839784,0.00024461493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023081857,0.00046457845,0.0003968785,0.0027477657,0.000557618,0.0012055311,0.00053740677,0.0006416084,0.002636942],"category_scores_gemma":[0.0065100556,0.0002868787,0.00040864784,0.0011363287,0.000356699,0.00043404673,0.0010479914,0.00050048134,0.00085439277],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008623413,0.00011296256,0.5491608,0.0007020614,0.00014436741,0.13093068,0.0016408885,0.0020654027,0.06337844,0.0026949774,0.022311656,0.22599545],"study_design_scores_gemma":[0.000090253256,0.00048583205,0.36397105,0.0013999704,0.00046835368,0.3514508,0.0014543914,0.016241025,0.12404887,0.0072599454,0.13298307,0.00014651813],"about_ca_topic_score_codex":0.0021090987,"about_ca_topic_score_gemma":0.0035660572,"teacher_disagreement_score":0.0027477657,"about_ca_system_score_codex":0.0004429038,"about_ca_system_score_gemma":0.0006235074,"threshold_uncertainty_score":0.012207031},"labels":[],"label_agreement":null},{"id":"W3204258284","doi":"10.1038/s41525-021-00243-3","title":"Contribution of rare variant associations to neurodegenerative disease presentation","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Neurological diseases and metabolism","field":"Neuroscience","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; Occupational Cancer Research Centre; Centre for Addiction and Mental Health; Robarts Clinical Trials; McGill University; London Health Sciences Centre; Montreal Neurological Institute and Hospital; Queen's University; Thunder Bay Regional Research Institute; Ottawa Hospital; Bruyère; Baycrest Hospital; Lawson Health Research Institute; Toronto Western Hospital; NOSM University; Parkwood Institute; Public Health Ontario; University Health Network; University of Calgary; Health Sciences Centre; University of Ottawa; Mount Sinai Hospital; St Joseph's Health Care; Toronto Dementia Research Alliance; Western University; University of Toronto; Sinai Health System; St. Michael's Hospital; Sunnybrook Health Science Centre","funders":"Faculty of Health Sciences, Queen's University; Temerty Family Foundation; University of Toronto; National Institutes of Health; Queen's University; Ontario Brain Institute; Physicians' Services Incorporated Foundation; Heart and Stroke Foundation of Canada; Ontario Ministry of Health and Long-Term Care; TauRx Pharmaceuticals; London Health Sciences Foundation; Government of Ontario; Canadian Institutes of Health Research; F. Hoffmann-La Roche; Parkinson Canada; Weston Brain Institute; Biogen; Centre for Addiction and Mental Health Foundation; Ontario Ministry of Research and Innovation; Morris Kerzner Memorial Fund; McMaster University; Fondation Brain Canada; Alzheimer Society; BrightFocus Foundation; University of Ottawa","keywords":"Disease; Frontotemporal dementia; Amyotrophic lateral sclerosis; Neurodegeneration; Genome-wide association study; Genetic association; Dementia; Nonsynonymous substitution; Medicine; Biology; Genetics; Pathology; Gene; Single-nucleotide polymorphism; Genotype","score_opus":0.039386583399457525,"score_gpt":0.3071102947212272,"score_spread":0.26772371132176964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3204258284","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99165404,0.0017656634,0.0033311034,0.00026207702,0.000040168667,0.000027700007,0.0012779158,0.00006175814,0.0015794794],"genre_scores_gemma":[0.99807113,0.00023657267,0.00084140996,0.00006745053,0.000023426233,0.000008810578,0.00051222526,0.00001923976,0.0002197433],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9955361,0.0008883682,0.0004718783,0.0018952341,0.0007841111,0.00042440646],"domain_scores_gemma":[0.9957963,0.0019049124,0.0010740813,0.00062039035,0.00032092957,0.0002833077],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024894765,0.00056807866,0.0007377519,0.0018916863,0.001003597,0.0012350954,0.00067207124,0.0005777516,0.0025076105],"category_scores_gemma":[0.008365813,0.00027293077,0.0008465702,0.0014582013,0.0009391843,0.00031686408,0.0010539507,0.00064228044,0.0002616013],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033963117,0.000022520542,0.97252077,0.00007669316,0.00091794913,0.0016771101,0.0005012437,0.0004883534,0.009052518,0.00043867348,0.00034395594,0.01362061],"study_design_scores_gemma":[0.000023219178,0.00006954247,0.99131876,0.00004894884,0.00045406545,0.0028956668,0.0002676647,0.0012245821,0.0010546701,0.001131798,0.0014858502,0.000025181185],"about_ca_topic_score_codex":0.038612187,"about_ca_topic_score_gemma":0.065344594,"teacher_disagreement_score":0.038612187,"about_ca_system_score_codex":0.0007403451,"about_ca_system_score_gemma":0.00086237234,"threshold_uncertainty_score":0.076774895},"labels":[],"label_agreement":null},{"id":"W3207750658","doi":"10.1038/s41525-021-00248-y","title":"Single-cell RNA sequencing for the identification of early-stage lung cancer biomarkers from circulating blood","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Dalhousie University; Cancer Research Society; Dalhousie Medical Research Foundation","keywords":"Lung cancer; RNA; Stage (stratigraphy); Biomarker; Identification (biology); Cancer; microRNA; Biology; Computational biology; Oncology; Cancer research; Medicine; Internal medicine; Gene; Genetics","score_opus":0.023094564958021254,"score_gpt":0.2707361185603526,"score_spread":0.24764155360233137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3207750658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.74413645,0.0064893523,0.22637741,0.00047782084,0.00031793112,0.00046122103,0.015917853,0.0014062008,0.0044157268],"genre_scores_gemma":[0.8155979,0.0030112306,0.1656397,0.0006370758,0.00016508241,0.00067853986,0.010436291,0.00028559257,0.0035486196],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996939,0.000047492256,0.0000212964,0.00010855288,0.000101196594,0.000027616185],"domain_scores_gemma":[0.999696,0.000115467046,0.000052968375,0.000038080623,0.00007687525,0.000020719839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039028766,0.0002931964,0.0003188365,0.00061064475,0.00028883133,0.00053872296,0.00018813203,0.00034560607,0.0010136749],"category_scores_gemma":[0.00072863343,0.00015830695,0.00024982585,0.0003538791,0.00019743353,0.00017204089,0.00016916475,0.00044052082,0.00077012804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006619229,0.00001528661,0.0014834141,0.00007876881,0.00001410715,0.000032939475,0.000032331893,0.00021504138,0.9919703,0.00012870488,0.00019177338,0.0057710824],"study_design_scores_gemma":[0.000029385328,0.00038190788,0.033044495,0.000041330433,0.00008640766,0.00038908172,0.00010385902,0.013528014,0.94024193,0.00083337794,0.011294571,0.000025609937],"about_ca_topic_score_codex":0.0004556691,"about_ca_topic_score_gemma":0.0015054975,"teacher_disagreement_score":0.0010136749,"about_ca_system_score_codex":0.0002062167,"about_ca_system_score_gemma":0.00033678516,"threshold_uncertainty_score":0.0033910275},"labels":[],"label_agreement":null},{"id":"W3209613800","doi":"10.1038/s41525-021-00254-0","title":"A recurrent SHANK3 frameshift variant in Autism Spectrum Disorder","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Addiction and Mental Health; McMaster University; Ontario Genomics; Canada Research Chairs; SickKids Foundation; Okanagan University College; University of British Columbia, Okanagan Campus; Hospital for Sick Children; University of British Columbia; BC Children's Hospital; Holland Bloorview Kids Rehabilitation Hospital; University of Toronto","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Canadian Institutes of Health Research; Ontario Genomics Institute; Canada Foundation for Innovation; Government of Canada; National Institute of Neurological Disorders and Stroke; Verily Life Sciences; Sick Kids Foundation; Genome Canada; Ontario Genomics; Fondation Brain Canada; Hospital for Sick Children; Ontario Brain Institute; Government of Ontario; University of Toronto; Autism Speaks","keywords":"Frameshift mutation; Autism spectrum disorder; Autism; Spectrum (functional analysis); Medicine; Psychology; Genetics; Mutation; Psychiatry; Biology; Physics; Gene","score_opus":0.03354921251717711,"score_gpt":0.30763541878947953,"score_spread":0.2740862062723024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209613800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990662,0.0001561273,0.00018580453,0.00003682354,0.0000049075065,0.0000056964673,0.0001313925,0.000018452507,0.0003946453],"genre_scores_gemma":[0.99928564,0.000072464696,0.0003628595,0.000016175107,0.0000050445788,0.0000021432365,0.00011418643,0.0000037597397,0.00013773618],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998512,0.000014305189,0.00001924511,0.000054272892,0.000043087297,0.00001793544],"domain_scores_gemma":[0.9998435,0.000039834827,0.00006266701,0.000010303973,0.000013072258,0.000030511532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016131168,0.00036623588,0.00021199347,0.0009351751,0.00036805365,0.00019280352,0.00025407813,0.0004030047,0.0015768869],"category_scores_gemma":[0.0007055716,0.0001039407,0.00015193231,0.000573916,0.00033436654,0.00009280893,0.0002856135,0.00022055756,0.0002430022],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001221155,0.00014954963,0.596201,0.00015078754,0.00016990193,0.1508646,0.001147645,0.0007989878,0.20282255,0.00062189874,0.0016080847,0.044243928],"study_design_scores_gemma":[0.000047639765,0.00028278236,0.82760066,0.00003837104,0.0001246042,0.1515871,0.0003947832,0.0012082427,0.016258249,0.00063164736,0.0017908873,0.000035026438],"about_ca_topic_score_codex":0.0025036335,"about_ca_topic_score_gemma":0.004395119,"teacher_disagreement_score":0.0025036335,"about_ca_system_score_codex":0.00022410248,"about_ca_system_score_gemma":0.00018578893,"threshold_uncertainty_score":0.0052752495},"labels":[],"label_agreement":null},{"id":"W3213878445","doi":"10.1038/s41525-021-00263-z","title":"Homozygous duplication identified by whole genome sequencing causes LRBA deficiency","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Ontario Genomics; Hospital for Sick Children","funders":"Qatar National Research Fund; Fonds National de la Recherche Luxembourg; University of Toronto; Immunodeficiency Canada; Jeffrey Modell Foundation","keywords":"Sanger sequencing; Genetics; Biology; Exome sequencing; Gene duplication; Whole genome sequencing; Primary immunodeficiency; Exome; Gene; Genome; DNA sequencing; Mutation; Immune system","score_opus":0.015387154741161375,"score_gpt":0.23778040371595546,"score_spread":0.2223932489747941,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3213878445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923953,0.0009835747,0.003564166,0.00013614769,0.000022750588,0.000037675258,0.00052104855,0.00018253982,0.0021569477],"genre_scores_gemma":[0.99615175,0.0004691692,0.0022527478,0.000070272006,0.000019151223,0.0000111180625,0.00034725363,0.000024694202,0.00065380725],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99982053,0.000028371309,0.000017339147,0.000057514317,0.000051997675,0.000024408757],"domain_scores_gemma":[0.9997969,0.00007722662,0.00007018025,0.000019178582,0.000012938595,0.000023526929],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014169872,0.0006438546,0.00033019806,0.0007444772,0.00020436168,0.00023637593,0.00026563925,0.00067185966,0.0017725849],"category_scores_gemma":[0.0007057899,0.00017630382,0.00023383665,0.0003923186,0.00032397872,0.00016591171,0.00035518626,0.0003023403,0.0005227293],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054031744,0.00010313082,0.07489322,0.0003926174,0.00015563812,0.23050328,0.0005438426,0.00085889717,0.6396539,0.0009093417,0.001402327,0.05004347],"study_design_scores_gemma":[0.00006955183,0.00038768954,0.21731147,0.000102172686,0.00021633423,0.6512522,0.00034617024,0.0033783051,0.11590061,0.0010293588,0.009979064,0.000027111588],"about_ca_topic_score_codex":0.00041022702,"about_ca_topic_score_gemma":0.0006722714,"teacher_disagreement_score":0.0017725849,"about_ca_system_score_codex":0.00017151577,"about_ca_system_score_gemma":0.00017481,"threshold_uncertainty_score":0.0059298873},"labels":[],"label_agreement":null},{"id":"W3214665950","doi":"10.1038/s41525-021-00256-y","title":"Deficiency of TET3 leads to a genome-wide DNA hypermethylation episignature in human whole blood","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; London Health Sciences Centre","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Wellcome Trust; Hartwell Foundation; Johns Hopkins University; U.S. Department of Health and Human Services","keywords":"DNA methylation; Epigenetics; DNA demethylation; Genetics; Biology; 5-Hydroxymethylcytosine; DNA; Chromatin; Methylation; CpG site; Gene; Gene expression","score_opus":0.011850902621779602,"score_gpt":0.2651565304655102,"score_spread":0.25330562784373056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3214665950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993418,0.00028324273,0.0046257842,0.00005581653,0.0000097844395,0.000023383867,0.0006941228,0.00012219479,0.00076773646],"genre_scores_gemma":[0.99560106,0.00022163025,0.0017457741,0.000040320392,0.0000040830337,0.000018076784,0.0009705721,0.000022609604,0.0013758744],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99988353,0.000017685836,0.0000080737955,0.000049969258,0.000028613553,0.000012122548],"domain_scores_gemma":[0.9999325,0.00002099519,0.000015011441,0.000010615277,0.0000068866084,0.000013949061],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010459714,0.00017447362,0.00013300337,0.00030040377,0.000114178656,0.0001847851,0.00010966774,0.00019198352,0.0015108449],"category_scores_gemma":[0.00024038213,0.0001237436,0.00012108692,0.00019258652,0.00011850265,0.000054810553,0.00022093387,0.00024117276,0.00020519267],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031217167,0.000023116596,0.0042634057,0.000018029166,0.000016947177,0.0003950136,0.000045293687,0.00008404512,0.9895677,0.000086397995,0.00010926304,0.0050786627],"study_design_scores_gemma":[0.000051472347,0.00069044565,0.13937844,0.0000129793925,0.00009227097,0.0075957794,0.00008259758,0.0035072854,0.8449258,0.00030665056,0.003341985,0.000014259507],"about_ca_topic_score_codex":0.0012018203,"about_ca_topic_score_gemma":0.001101918,"teacher_disagreement_score":0.0015108449,"about_ca_system_score_codex":0.000114626906,"about_ca_system_score_gemma":0.00009918205,"threshold_uncertainty_score":0.0050543547},"labels":[],"label_agreement":null},{"id":"W3215165504","doi":"10.1038/s41525-021-00269-7","title":"Author Correction: Deficiency of TET3 leads to a genome-wide DNA hypermethylation episignature in human whole blood","year":2021,"lang":"en","type":"erratum","venue":"npj Genomic Medicine","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; London Health Sciences Centre","funders":"","keywords":"DNA methylation; DNA; Whole blood; Genetics; Genome; Biology; Gene; Immunology; Gene expression","score_opus":0.014293685682038386,"score_gpt":0.2774310397471715,"score_spread":0.2631373540651331,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3215165504","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015105244,0.0013677375,0.0033845776,0.05646056,0.929141,0.000029681383,0.001729863,0.00083530054,0.0055408482],"genre_scores_gemma":[0.08763776,0.013746919,0.023286585,0.08566738,0.16538475,0.00022969228,0.006064079,0.004344157,0.61363864],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998078,0.0002484276,0.0003014989,0.0003344317,0.0008946938,0.00014296408],"domain_scores_gemma":[0.9920358,0.0029643502,0.0005524647,0.00047327846,0.0035647762,0.00040929453],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017289007,0.0013213821,0.0011138386,0.001579397,0.0022343453,0.001993666,0.0020699361,0.004453869,0.031397063],"category_scores_gemma":[0.020358974,0.0006790597,0.00078879675,0.0012251333,0.0014590306,0.0011030524,0.0011152618,0.0068692635,0.016929692],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012119282,0.00001655133,0.00024964503,0.00018993262,0.000026435639,0.004088425,0.00010997772,0.00012833625,0.00091315096,0.0019050014,0.97552127,0.016729971],"study_design_scores_gemma":[0.000049157326,0.000042978783,0.0012396271,0.00022547078,0.00007408087,0.00946588,0.00012640434,0.0005097295,0.0037073516,0.0016588906,0.98284346,0.00005699718],"about_ca_topic_score_codex":0.007864844,"about_ca_topic_score_gemma":0.009635267,"teacher_disagreement_score":0.031397063,"about_ca_system_score_codex":0.001846444,"about_ca_system_score_gemma":0.0022461368,"threshold_uncertainty_score":0.105033696},"labels":[],"label_agreement":null},{"id":"W3216330367","doi":"10.1038/s41525-021-00266-w","title":"Lamin A/C missense variants: from discovery to functional validation","year":2021,"lang":"en","type":"editorial","venue":"npj Genomic Medicine","topic":"Nuclear Structure and Function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Robarts Clinical Trials; Western University","funders":"Schulich School of Medicine and Dentistry; Canadian Institutes of Health Research; Heart and Stroke Foundation of Canada","keywords":"Missense mutation; LMNA; Biology; Genetics; Lamin; Computational biology; Gene; Pleiotropy; Mutation; Phenotype","score_opus":0.007660190283477511,"score_gpt":0.2325676740365442,"score_spread":0.22490748375306668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3216330367","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017103886,0.009648078,0.00037030427,0.057065148,0.9315094,0.000019686686,0.00006068329,0.00009165813,0.0010640072],"genre_scores_gemma":[0.001036203,0.009747297,0.0002829166,0.041945048,0.94131184,0.000027732,0.00006263596,0.000054877688,0.0055315597],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.996807,0.00055916514,0.0005307085,0.00046245608,0.0014431755,0.00019758187],"domain_scores_gemma":[0.9813953,0.009033775,0.00071149203,0.00048911606,0.006308955,0.0020611957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008155389,0.002416482,0.0023109391,0.0015306416,0.0017042039,0.00438045,0.003004083,0.011483424,0.0040391497],"category_scores_gemma":[0.023027565,0.0010144709,0.0017297297,0.0006340771,0.0020751958,0.0036414012,0.0012701959,0.024851756,0.0044023693],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008224643,0.000019004794,0.00006411488,0.00022197644,0.000034876743,0.0004755605,0.000016902828,0.000039441013,0.0002472197,0.00046643437,0.98770124,0.010630931],"study_design_scores_gemma":[0.00014201443,0.00007448105,0.00059924915,0.0006398303,0.000120677556,0.0015632103,0.00005372457,0.00029988,0.00056016515,0.0027153564,0.99319035,0.00004109008],"about_ca_topic_score_codex":0.000978194,"about_ca_topic_score_gemma":0.002341618,"teacher_disagreement_score":0.011483424,"about_ca_system_score_codex":0.0022224372,"about_ca_system_score_gemma":0.0020338828,"threshold_uncertainty_score":0.04313034},"labels":[],"label_agreement":null},{"id":"W4200140735","doi":"10.1038/s41525-021-00268-8","title":"De novo variants in H3-3A and H3-3B are associated with neurodevelopmental delay, dysmorphic features, and structural brain abnormalities","year":2021,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Lunenfeld-Tanenbaum Research Institute; St. Michael's Hospital; Mount Sinai Hospital","funders":"CIHR Skin Research Training Centre; National Heart, Lung, and Blood Institute; U.S. Department of Health and Human Services; Peking Union Medical College; Canadian Institutes of Health Research; Chinese Academy of Medical Sciences; Natural Science Foundation of Beijing Municipality; National Human Genome Research Institute; Tsinghua University; Government of Canada; Baylor-Hopkins Center for Mendelian Genomics; National Eye Institute; Peking Union Medical College Hospital; National Natural Science Foundation of China; Broad Institute","keywords":"Global developmental delay; Histone H3; Missense mutation; Genetics; Biology; Short stature; Phenotype; Exome sequencing; Gene; Chromatin; Endocrinology","score_opus":0.005650354893185901,"score_gpt":0.2056987038750968,"score_spread":0.2000483489819109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200140735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768364,0.00020453084,0.00079984707,0.00003389937,0.000009079017,0.000008522549,0.00079550303,0.000034576547,0.00043039708],"genre_scores_gemma":[0.99735934,0.00023402752,0.0007297869,0.00003124971,0.0000073531073,0.0000064525007,0.00083934935,0.000017971382,0.0007743096],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99982077,0.000011840059,0.00002001255,0.00007605653,0.00004863108,0.000022704628],"domain_scores_gemma":[0.999793,0.000041403346,0.00008672378,0.00002342774,0.000014903966,0.000040585535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012980387,0.0004891299,0.00028873302,0.0004343,0.00041246653,0.00017565796,0.00024809878,0.00029491636,0.0030086795],"category_scores_gemma":[0.00032086,0.0001465095,0.0002835531,0.00039267013,0.00031219854,0.00009411977,0.00037818155,0.00036721234,0.0003037789],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011038014,0.00013832557,0.2754044,0.00011461252,0.00037695648,0.016806867,0.0004478719,0.00030240408,0.68269175,0.0003037668,0.00066732086,0.021641959],"study_design_scores_gemma":[0.00005161549,0.00026406205,0.8582863,0.000018514518,0.00016869072,0.04549197,0.000280864,0.00050983345,0.09084798,0.00019525403,0.0038656539,0.00001926728],"about_ca_topic_score_codex":0.0027322657,"about_ca_topic_score_gemma":0.0044724373,"teacher_disagreement_score":0.0030086795,"about_ca_system_score_codex":0.00018044852,"about_ca_system_score_gemma":0.000114450086,"threshold_uncertainty_score":0.010065079},"labels":[],"label_agreement":null},{"id":"W4206207015","doi":"10.1038/s41525-021-00271-z","title":"Chromosomal microarray analysis of 410 Han Chinese patients with autism spectrum disorder or unexplained intellectual disability and developmental delay","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"Hospital for Sick Children; University of Toronto; National Natural Science Foundation of China","keywords":"Copy-number variation; Intellectual disability; Trisomy; Autism; Autism spectrum disorder; Etiology; Microarray; Genetics; Microarray analysis techniques; Biology; Medicine; Internal medicine; Genome; Psychiatry; Gene","score_opus":0.0050469201422801,"score_gpt":0.20603804691273178,"score_spread":0.2009911267704517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206207015","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994055,0.000059220765,0.000092863615,0.000019767185,0.0000020925859,0.000005058934,0.0002139901,0.0000038604635,0.0001975308],"genre_scores_gemma":[0.9990702,0.000048110855,0.00019671513,0.000030237581,0.000004972815,0.000013204783,0.00047164943,0.0000017646669,0.0001630263],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99976224,0.000027296806,0.000023888348,0.000090570255,0.00004494212,0.00005110572],"domain_scores_gemma":[0.99984443,0.000058977366,0.000026828546,0.000013722295,0.00002947478,0.000026552574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015509827,0.00027584002,0.00027441673,0.0012239162,0.00068536366,0.0002045859,0.00017707475,0.00033475313,0.0008767595],"category_scores_gemma":[0.0005003649,0.000197636,0.00024537087,0.000998538,0.00022462958,0.000106571155,0.00026147312,0.00011475925,0.00016160449],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005568601,0.00006425918,0.89108765,0.000051626514,0.00007548136,0.004911771,0.0006887042,0.00030026244,0.09116351,0.00008262751,0.00039024203,0.01062698],"study_design_scores_gemma":[0.000008251463,0.00009194597,0.9950648,0.000001821725,0.000025963578,0.0019513807,0.00018995731,0.00040713613,0.0019528308,0.00002710078,0.0002731707,0.0000056733497],"about_ca_topic_score_codex":0.011601846,"about_ca_topic_score_gemma":0.0082223015,"teacher_disagreement_score":0.011601846,"about_ca_system_score_codex":0.00050091324,"about_ca_system_score_gemma":0.0002905365,"threshold_uncertainty_score":0.023068607},"labels":[],"label_agreement":null},{"id":"W4213200670","doi":"10.1038/s41525-022-00284-2","title":"Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"University of Toronto; University of Texas Southwestern Medical Center; Cantor Foundation, Iris & B. Gerald; Hospital for Sick Children; Autism Speaks","keywords":"Genetics; Copy-number variation; Biology; Autism; Autism spectrum disorder; Disease gene identification; Neurodevelopmental disorder; Candidate gene; Genome-wide association study; Gene; Genome; Exome sequencing; Single-nucleotide polymorphism; Mutation; Medicine; Genotype","score_opus":0.05769558485699978,"score_gpt":0.32632536651197863,"score_spread":0.26862978165497886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213200670","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994153,0.00005041936,0.00023486894,0.0000073496394,0.0000015708572,0.000004450891,0.00015725286,0.0000075398198,0.00012132892],"genre_scores_gemma":[0.9990878,0.000056315745,0.00037301466,0.000010538222,0.000004001514,0.000008523661,0.00031547114,0.0000074196014,0.00013686351],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994771,0.00008398062,0.000040720595,0.00024135048,0.000090479596,0.00006643724],"domain_scores_gemma":[0.9994584,0.00013454004,0.00013459008,0.00009726831,0.000051460505,0.00012376289],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051846285,0.00041040307,0.00044542877,0.0013277207,0.00084645883,0.00042926983,0.00030362603,0.00043172718,0.0016693106],"category_scores_gemma":[0.001456158,0.00028125106,0.00047831502,0.00086841075,0.0003002958,0.00017421925,0.0006238453,0.0003513371,0.00020724919],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034369424,0.00003455625,0.9775643,0.000013900566,0.00021185455,0.0024045003,0.0005166079,0.0002491279,0.014141267,0.0001224044,0.00022205936,0.004175746],"study_design_scores_gemma":[0.000016736796,0.00010700007,0.9941077,0.0000059320096,0.000096849035,0.0037581201,0.0001303807,0.00070217287,0.0006668256,0.00007267902,0.0003267901,0.000008825563],"about_ca_topic_score_codex":0.006067308,"about_ca_topic_score_gemma":0.0065049534,"teacher_disagreement_score":0.006067308,"about_ca_system_score_codex":0.0001685039,"about_ca_system_score_gemma":0.00019162177,"threshold_uncertainty_score":0.01206398},"labels":[],"label_agreement":null},{"id":"W4220661428","doi":"10.1038/s41525-022-00288-y","title":"Whole genome sequencing delineates regulatory, copy number, and cryptic splice variants in early onset cardiomyopathy","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cardiomyopathy and Myosin Studies","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ted Rogers Centre for Heart Research; London Health Sciences Centre; University Health Network; Health Sciences Centre; Children's Hospital of Eastern Ontario; Hamilton Health Sciences; Toronto General Hospital; SickKids Foundation; University of Toronto; Kingston General Hospital; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"Vlaamse regering; Medical Research Council; NSW Ministry of Health; University of Toronto; Department of Health and Social Care; Ministerio de Ciencia e Innovación; National Institute for Health and Care Research; Fonds Wetenschappelijk Onderzoek; Barts Charity; Wellcome Trust; Department of Biotechnology, Ministry of Science and Technology, India; Hospital for Sick Children; Heart and Stroke Foundation of Canada; Government of Canada; GlaxoSmithKline; National Health and Medical Research Council; Cancer Research UK; Canadian Institutes of Health Research; Fundació la Marató de TV3; National Science Foundation","keywords":"Biology; Genetics; Gene; Genome; Copy-number variation; Exome sequencing; Enhancer; Human genome; Phenotype; Gene expression","score_opus":0.021111207936345914,"score_gpt":0.26130529459358137,"score_spread":0.24019408665723546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220661428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987257,0.00021460638,0.00050498854,0.000015360623,0.000002000153,0.0000035663077,0.0003393865,0.0000071094337,0.00018727907],"genre_scores_gemma":[0.99880254,0.00013817124,0.00040121697,0.000022654356,0.000004293811,0.000004369847,0.00042625706,0.000007374781,0.0001931001],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998099,0.000030856205,0.000016188871,0.00006609322,0.00004975683,0.000027260647],"domain_scores_gemma":[0.9996885,0.00013945864,0.00009704866,0.000022549635,0.000018442217,0.000033998025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026009863,0.00021239449,0.00017436186,0.0009950707,0.00021770399,0.00029858065,0.00017886041,0.00034449107,0.0012158667],"category_scores_gemma":[0.0006196278,0.00013952109,0.0002117654,0.000661519,0.00020022335,0.000088455716,0.00022365956,0.00020391363,0.0001610902],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007155288,0.00007245127,0.7670691,0.00007733683,0.00016236326,0.0045276494,0.00031079882,0.00043810788,0.205751,0.0003140208,0.000439866,0.020121766],"study_design_scores_gemma":[0.000015182874,0.00008897586,0.9866368,0.000014609975,0.00009399768,0.004872122,0.00008579375,0.0008137572,0.0066020684,0.00013570486,0.00063577085,0.000005291175],"about_ca_topic_score_codex":0.0006388339,"about_ca_topic_score_gemma":0.0014042719,"teacher_disagreement_score":0.0012158667,"about_ca_system_score_codex":0.0001016977,"about_ca_system_score_gemma":0.000098442004,"threshold_uncertainty_score":0.0040674806},"labels":[],"label_agreement":null},{"id":"W4220810507","doi":"10.1038/s41525-022-00292-2","title":"PanCancer analysis of somatic mutations in repetitive regions reveals recurrent mutations in snRNA U2","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Agència de Gestió d'Ajuts Universitaris i de Recerca; Fundación Bancaria Caixa d'Estalvis i Pensions de Barcelona; Institució Catalana de Recerca i Estudis Avançats; Ministerio de Economía y Competitividad; Ministerio de Ciencia e Innovación; Generalitat de Catalunya; Eusko Jaurlaritza; Lady Tata Memorial Trust; “la Caixa” Foundation; Centro de Investigación Biomédica en Red de Cáncer; Instituto de Salud Carlos III; Amgen","keywords":"Genetics; Biology; Gene; Mutation; Somatic cell; Genome; Germline mutation","score_opus":0.01673643404314701,"score_gpt":0.29119433847056875,"score_spread":0.27445790442742174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220810507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99551183,0.00033550523,0.0031569058,0.000018081475,0.0000030780554,0.000017248658,0.000292158,0.00013910861,0.00052605337],"genre_scores_gemma":[0.9936725,0.00016219854,0.0052467077,0.000023202614,0.0000025776967,0.000009804986,0.0004112101,0.000026577129,0.00044523153],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99979943,0.000026778107,0.000015874251,0.00006916918,0.000057601643,0.000031192874],"domain_scores_gemma":[0.99975294,0.000095249074,0.000050161823,0.000031152216,0.000030827094,0.000039596438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022541442,0.00019280316,0.00024215941,0.0011919138,0.00017220943,0.00021164691,0.0001767716,0.00028576166,0.0009975348],"category_scores_gemma":[0.00060103857,0.00010212704,0.00018692082,0.0004814163,0.000181515,0.00007727481,0.00022289698,0.00014842521,0.0002665203],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020383719,0.000012988791,0.024983877,0.000056092184,0.000039203307,0.0010628172,0.00011378546,0.00024213074,0.96282864,0.00006835698,0.00007281839,0.010315319],"study_design_scores_gemma":[0.000029528584,0.00042261355,0.27949685,0.000022439708,0.0001558253,0.0150308125,0.00017962717,0.00710906,0.69393414,0.00024836883,0.003347048,0.000023665054],"about_ca_topic_score_codex":0.0016456023,"about_ca_topic_score_gemma":0.004544045,"teacher_disagreement_score":0.0016456023,"about_ca_system_score_codex":0.00017321286,"about_ca_system_score_gemma":0.00011064009,"threshold_uncertainty_score":0.0033370852},"labels":[],"label_agreement":null},{"id":"W4221035231","doi":"10.1038/s41525-022-00291-3","title":"VHL mosaicism: the added value of multi-tissue analysis","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cancer, Hypoxia, and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; SickKids Foundation; University of Toronto; Toronto General Hospital; University Health Network; Hospital for Sick Children; Princess Margaret Cancer Centre","funders":"University of Toronto","keywords":"Pathology; Allele; Pheochromocytoma; Germline; Immunohistochemistry; Biology; Cancer research; Medicine; Gene; Genetics","score_opus":0.013515149286826615,"score_gpt":0.2711419287430266,"score_spread":0.2576267794562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221035231","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95868653,0.006814429,0.018647268,0.003135497,0.00015344212,0.000058308637,0.0003763644,0.0007328381,0.011395181],"genre_scores_gemma":[0.9868198,0.0012178753,0.010969789,0.00017451798,0.0000970002,0.000005853616,0.00007200659,0.00004297127,0.000600139],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9997043,0.00007893994,0.00003295995,0.00006034023,0.000079610225,0.00004380323],"domain_scores_gemma":[0.99891245,0.00056606106,0.00012991384,0.00013388778,0.00011971021,0.0001379676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005163309,0.00034923328,0.00026798746,0.0013690308,0.00024820265,0.0006137693,0.000345626,0.00057795015,0.0014659035],"category_scores_gemma":[0.002343577,0.00018653054,0.00012230888,0.00031956413,0.00044179716,0.0004928807,0.0004888987,0.0004692967,0.00038099743],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058533176,0.00004728891,0.24484847,0.00023007972,0.000057916324,0.3515203,0.00045747237,0.00085438736,0.26971528,0.0013824408,0.0017945869,0.12850645],"study_design_scores_gemma":[0.00001678666,0.0001379149,0.06417337,0.00007372836,0.00007416502,0.87189823,0.00036747052,0.0048128217,0.047486633,0.0022412492,0.008689492,0.000028174902],"about_ca_topic_score_codex":0.00057841773,"about_ca_topic_score_gemma":0.0010783713,"teacher_disagreement_score":0.0014659035,"about_ca_system_score_codex":0.00017629474,"about_ca_system_score_gemma":0.00018904512,"threshold_uncertainty_score":0.004903972},"labels":[],"label_agreement":null},{"id":"W4223478012","doi":"10.1038/s41525-022-00295-z","title":"Best practices for the interpretation and reporting of clinical whole genome sequencing","year":2022,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Best practice; Test (biology); Whole genome sequencing; Interpretation (philosophy); Clinical Practice; Health care; DNA sequencing; Medicine; Data science; Computer science; Genome; Political science; Family medicine; Biology; Genetics","score_opus":0.28549433742505864,"score_gpt":0.4814087261400791,"score_spread":0.19591438871502048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223478012","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":"reporting","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":"reporting","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00037507416,0.8598768,0.038436595,0.07926828,0.008404412,0.00040324192,0.0005866017,0.0009354413,0.011713571],"genre_scores_gemma":[0.004141417,0.8895915,0.07945294,0.018442582,0.004141858,0.00062849297,0.0013011516,0.00018419634,0.0021158087],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9669446,0.014244678,0.0072579957,0.00231057,0.008410872,0.000831373],"domain_scores_gemma":[0.9085204,0.0548744,0.005801673,0.005002323,0.023779634,0.002021576],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.05440101,0.00212051,0.002671622,0.008172717,0.0010687485,0.0049191206,0.0077366033,0.007947843,0.0039076637],"category_scores_gemma":[0.07789504,0.0011415015,0.002578308,0.0040023876,0.005166199,0.0052054236,0.0040239454,0.011838051,0.005813069],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007474189,0.0001108479,0.000626325,0.019737065,0.00024368579,0.0006642399,0.00066992413,0.00083929923,0.0009969681,0.022322875,0.15027982,0.8034343],"study_design_scores_gemma":[0.000034027587,0.00005041172,0.0009066645,0.03506301,0.00020954905,0.001387636,0.00026151972,0.00028492959,0.0007665249,0.017848352,0.94309413,0.00009324364],"about_ca_topic_score_codex":0.0052748625,"about_ca_topic_score_gemma":0.0048182965,"teacher_disagreement_score":0.94559896,"about_ca_system_score_codex":0.0033210074,"about_ca_system_score_gemma":0.012632601,"threshold_uncertainty_score":0.28770345},"labels":[],"label_agreement":null},{"id":"W4226145696","doi":"10.1038/s41525-022-00299-9","title":"Genetic evidence supports the development of SLC26A9 targeting therapies for the treatment of lung disease","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton; St. Michael's Hospital; Institut universitaire de cardiologie et de pneumologie de Québec; Memorial University of Newfoundland; Foothills Medical Centre; London Health Sciences Centre; St. Paul's Hospital; Izaak Walton Killam Health Centre; Alberta Children's Hospital; University of Saskatchewan; Hospital for Sick Children; Université de Montréal; Queen Elizabeth II Health Sciences Centre; Children's Hospital of Eastern Ontario; Université Laval; BC Children's Hospital; Centre Hospitalier de l’Université de Montréal; Kingston Health Sciences Centre; Public Health Ontario; University of Toronto","funders":"Hospital for Sick Children; Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Canada; Government of Canada; Canadian Institutes of Health Research; Genome Canada; Government of Ontario; Medical Research Council; Cystic Fibrosis Foundation Therapeutics; Cystic Fibrosis Foundation","keywords":"Medicine; Cystic fibrosis transmembrane conductance regulator; Cystic fibrosis; COPD; Population; Spirometry; Internal medicine; Biobank; Lung; Pharmacology; Bioinformatics; Oncology; Biology; Environmental health","score_opus":0.04206895924006237,"score_gpt":0.34479693486035845,"score_spread":0.3027279756202961,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226145696","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12953073,0.8008412,0.0050930586,0.042603396,0.0020201006,0.00013122342,0.0067991912,0.00015787575,0.012823236],"genre_scores_gemma":[0.83673984,0.13985479,0.0035526182,0.011572346,0.0026287232,0.00007119354,0.003569875,0.00008872754,0.0019219774],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99652207,0.0015745824,0.0003832447,0.0007293655,0.00065079,0.00014000625],"domain_scores_gemma":[0.9747244,0.017949548,0.0032698966,0.0010914503,0.0022090017,0.0007557517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007449357,0.0005428378,0.0014841224,0.00093785464,0.00038710068,0.0016794124,0.0011621242,0.0013101614,0.014172166],"category_scores_gemma":[0.01684541,0.00030886443,0.0041671484,0.0016132433,0.0008586146,0.00063834095,0.0006270153,0.0022744949,0.0010821028],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022642821,0.0003429232,0.37227783,0.0375942,0.16973682,0.0020891675,0.0004005448,0.003971478,0.015033436,0.011747652,0.043970253,0.32019278],"study_design_scores_gemma":[0.0033481615,0.0034998117,0.61149,0.02019754,0.16841419,0.0029473323,0.0007377921,0.0038629922,0.003651006,0.0223044,0.15939994,0.00014672056],"about_ca_topic_score_codex":0.0059510665,"about_ca_topic_score_gemma":0.008197895,"teacher_disagreement_score":0.014172166,"about_ca_system_score_codex":0.00078319653,"about_ca_system_score_gemma":0.0014103713,"threshold_uncertainty_score":0.047410607},"labels":[],"label_agreement":null},{"id":"W4281631874","doi":"10.1038/s41525-022-00307-y","title":"Novel homozygous nonsense mutation of MLIP and compensatory alternative splicing","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Neurological Institute and Hospital; Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Courtois Foundation; Fondation du Grand défi Pierre Lavoie; Université de Montréal; Canadian Institutes of Health Research; Rare Disease Foundation","keywords":"Biology; Nonsense mutation; Exon; Genetics; Alternative splicing; Gene isoform; Nonsense; Nonsense-mediated decay; Mutation; RNA splicing; Exon skipping; Transcriptome; Protein isoform; Gene; Exome sequencing; Mendelian inheritance; Myopathy; Computational biology; RNA; Gene expression; Missense mutation","score_opus":0.019236280531844657,"score_gpt":0.27963461386963,"score_spread":0.26039833333778534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281631874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99348336,0.00042092107,0.0041279527,0.000340844,0.000058956986,0.00003367839,0.00022063639,0.0001431937,0.0011703814],"genre_scores_gemma":[0.99757594,0.00009943501,0.0013609319,0.00011557633,0.00005726154,0.000008516794,0.000095508236,0.000019655685,0.00066713913],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.999706,0.000029374902,0.000034406665,0.00011852105,0.00006114139,0.000050479066],"domain_scores_gemma":[0.999572,0.00017598546,0.0000821929,0.000030458335,0.000028210865,0.00011114093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015752231,0.00062902586,0.00042297313,0.00066773145,0.0003808044,0.00036769733,0.00037975816,0.0015376462,0.0013365638],"category_scores_gemma":[0.00065794017,0.00018106867,0.00042434788,0.0002974501,0.0005988785,0.00020454141,0.00042892768,0.0006805949,0.00034751656],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019688769,0.000067038025,0.012022889,0.000058724134,0.000037864633,0.8616667,0.00027131764,0.00028842883,0.11984679,0.00090741843,0.0002647302,0.0043712677],"study_design_scores_gemma":[0.000029503517,0.00039532688,0.04133148,0.000014275137,0.00005037678,0.92176235,0.00011846591,0.0019158974,0.032244276,0.0007543061,0.0013577159,0.000026025915],"about_ca_topic_score_codex":0.00035322402,"about_ca_topic_score_gemma":0.00049966556,"teacher_disagreement_score":0.0015376462,"about_ca_system_score_codex":0.00024815602,"about_ca_system_score_gemma":0.0001621905,"threshold_uncertainty_score":0.004471302},"labels":[],"label_agreement":null},{"id":"W4283070528","doi":"10.1038/s41525-022-00308-x","title":"Possible association of 16p11.2 copy number variation with altered lymphocyte and neutrophil counts","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Medical Research Council; Université de Lausanne; Jacobs Foundation; European Commission; Third Health Programme; Howard Hughes Medical Institute; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Copy-number variation; Biology; Neutropenia; Gene dosage; Immunology; Lymphocyte; Single-nucleotide polymorphism; Genetics; Gene; Genotype; Gene expression; Genome","score_opus":0.004804332245200092,"score_gpt":0.20365130924511687,"score_spread":0.19884697699991677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283070528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991123,0.0001825862,0.00025130183,0.00002769797,0.0000025338827,0.0000060152597,0.00018864335,0.0000068268387,0.00022217042],"genre_scores_gemma":[0.99933416,0.000070537186,0.00021320647,0.00001350835,0.0000055861133,0.0000084451385,0.00015999615,0.0000043574164,0.0001901807],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993988,0.00015087402,0.0000619233,0.00020797439,0.00009437728,0.00008598905],"domain_scores_gemma":[0.99863607,0.00064595405,0.00046842697,0.00008289158,0.00005725666,0.000109363886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044314578,0.00047293826,0.00042054354,0.0014287994,0.00017987151,0.00039733754,0.00043573623,0.00053885597,0.0034302885],"category_scores_gemma":[0.002305972,0.0001635857,0.00020419847,0.0008923631,0.00033744096,0.00016131444,0.00028398243,0.00032271174,0.00023671424],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009880163,0.000049217182,0.93444324,0.00006680176,0.00016648385,0.0051408513,0.0003514102,0.00033290137,0.05163808,0.00021590004,0.00011456507,0.0064925742],"study_design_scores_gemma":[0.000025053034,0.00028138576,0.98252696,0.00001244497,0.000106515865,0.010943002,0.00011465362,0.0006890229,0.0046280827,0.00022246226,0.00043626127,0.000014098137],"about_ca_topic_score_codex":0.0005854964,"about_ca_topic_score_gemma":0.0004236139,"teacher_disagreement_score":0.0034302885,"about_ca_system_score_codex":0.00012207945,"about_ca_system_score_gemma":0.00009144489,"threshold_uncertainty_score":0.011475444},"labels":[],"label_agreement":null},{"id":"W4289855556","doi":"10.1038/s41525-022-00318-9","title":"Transcriptomic effects of propranolol and primidone converge on molecular pathways relevant to essential tremor","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Neurological disorders and treatments","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Montreal Neurological Institute and Hospital","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Fonds de Recherche du Québec-Société et Culture; Government of Canada","keywords":"Essential tremor; Biology; Transcriptome; Primidone; Gene; Genetics; Computational biology; Bioinformatics; Gene expression; Neuroscience; Epilepsy","score_opus":0.010892735845248944,"score_gpt":0.23249361550123124,"score_spread":0.2216008796559823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289855556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958805,0.0008964688,0.0008870354,0.000098967605,0.000014095009,0.000014010686,0.0012676542,0.000025615718,0.0009155154],"genre_scores_gemma":[0.99409926,0.00075294985,0.0012399526,0.000116854004,0.0000075338653,0.000042755746,0.0017698483,0.000011359806,0.0019595218],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991345,0.000010067178,0.0000043117825,0.00002361969,0.000022998684,0.000025509838],"domain_scores_gemma":[0.9999217,0.000020440528,0.000021970387,0.000005559637,0.0000109581715,0.000019434487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007216338,0.00016674704,0.00020864882,0.00023255307,0.00014515607,0.0002636334,0.00005814298,0.00017035025,0.00081222644],"category_scores_gemma":[0.00014575578,0.00007592148,0.00027520643,0.00012912539,0.0001293413,0.00008507543,0.00017150285,0.00024133264,0.00013817842],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046880802,0.000020613345,0.0031474882,0.000041339626,0.0000157733,0.00015052532,0.000047852925,0.00011256045,0.99345446,0.000072279676,0.000066471745,0.002401902],"study_design_scores_gemma":[0.00005787849,0.00078537746,0.6822161,0.00003027858,0.00015746169,0.0009300634,0.00047047497,0.0032664477,0.30814674,0.0003837679,0.003538821,0.00001651435],"about_ca_topic_score_codex":0.0008666938,"about_ca_topic_score_gemma":0.002179965,"teacher_disagreement_score":0.0008666938,"about_ca_system_score_codex":0.00018766121,"about_ca_system_score_gemma":0.00020567926,"threshold_uncertainty_score":0.002717197},"labels":[],"label_agreement":null},{"id":"W4294678077","doi":"10.1038/s41525-022-00317-w","title":"Huntington’s disease age at motor onset is modified by the tandem hexamer repeat in TCERG1","year":2022,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; Horizon 2020 Framework Programme; National Institutes of Health; Uniwersytet Medyczny im. Karola Marcinkowskiego w Poznaniu; Fondazione I.R.C.C.S. Istituto Neurologico Carlo Besta; Universidade do Porto; Uniwersytet Warszawski; Università Cattolica del Sacro Cuore; North Bristol NHS Trust; European Commission; Umeå Universitet; Medical Research Council; Leids Universitair Medisch Centrum; Alzheimer’s Research UK; Universiteit Leiden; University of Aberdeen; Cardiff University; Istituto di Scienze e Tecnologie della Cognizione; Health and Care Research Wales; McGill University; CHDI Foundation; Uniwersytet Śląski w Katowicach; European Huntington's Disease Network; Sahlgrenska Universitetssjukhuset; University of Oxford; Brain Research Trust; EU Joint Programme – Neurodegenerative Disease Research; Central Manchester University Hospitals NHS Foundation Trust; University of Bern; Academy of Medical Sciences; Universidade de Lisboa; Warszawski Uniwersytet Medyczny; Wellcome Trust; Patrick Berthoud Charitable Trust","keywords":"Random hexamer; Biology; Genetics; Allele; Tandem repeat; Age of onset; Single-nucleotide polymorphism; Exon; Gene; Trinucleotide repeat expansion; Genetic association; Chromosome; Disease; Genome; Molecular biology; Internal medicine; Genotype; Medicine","score_opus":0.037224210074019604,"score_gpt":0.26880196306701365,"score_spread":0.23157775299299405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294678077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99853337,0.00016836441,0.00077115017,0.000027450264,0.000008436633,0.000003791235,0.000254077,0.000020400334,0.00021296414],"genre_scores_gemma":[0.99920386,0.000025858451,0.00037098306,0.000014497365,0.000006715323,0.000003090452,0.00020213441,0.000010440378,0.0001626108],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99942183,0.00016209966,0.000060349073,0.00019181549,0.00011221143,0.00005166929],"domain_scores_gemma":[0.9971545,0.0015395002,0.00075022987,0.0001793018,0.00018180175,0.00019472383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070186367,0.00040670685,0.00045301297,0.000811403,0.0002220752,0.0003526102,0.00032728555,0.00046973798,0.0029515028],"category_scores_gemma":[0.0025336202,0.00016843643,0.00066296436,0.0008624023,0.00028242666,0.00019614468,0.00023079106,0.00044526832,0.00043631982],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029455735,0.000116531526,0.8955744,0.00006591815,0.0005373035,0.0013424412,0.0001976699,0.00077921967,0.08874999,0.00011786839,0.000253194,0.009319762],"study_design_scores_gemma":[0.000024068026,0.00022594351,0.9915474,0.000010264442,0.00015984662,0.0015810925,0.000044345663,0.0021673602,0.0038787427,0.00010433449,0.00024356878,0.000012950423],"about_ca_topic_score_codex":0.0019195691,"about_ca_topic_score_gemma":0.0023682173,"teacher_disagreement_score":0.0029515028,"about_ca_system_score_codex":0.00015777229,"about_ca_system_score_gemma":0.000109652574,"threshold_uncertainty_score":0.009873748},"labels":[],"label_agreement":null},{"id":"W4319970245","doi":"10.1038/s41525-022-00343-8","title":"Bi-allelic ATG4D variants are associated with a neurodevelopmental disorder characterized by speech and motor impairment","year":2023,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Simon Fraser University; BC Children's Hospital; University of British Columbia","funders":"Common Fund; NIH Office of the Director; National Human Genome Research Institute; Monash Biomedicine Discovery Institute, Monash University; U.S. Department of Health and Human Services; National Institutes of Health; Canadian Institutes of Health Research; Monash University; University of Bristol","keywords":"Neurodevelopmental disorder; Allele; Audiology; Genetics; Medicine; Biology; Gene","score_opus":0.008524421595467343,"score_gpt":0.21381750840587727,"score_spread":0.20529308681040992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319970245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968458,0.00037304306,0.0014265773,0.00012775799,0.000021805412,0.000047905,0.0003023364,0.00006182334,0.0007929267],"genre_scores_gemma":[0.9973605,0.00025994223,0.0012128709,0.0001165492,0.000027631902,0.000029255385,0.0003191626,0.000022370936,0.00065168925],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.99950933,0.000047910344,0.00009312941,0.00015772335,0.00013066689,0.000061165694],"domain_scores_gemma":[0.99950016,0.000098622404,0.00019380431,0.000034828714,0.000051142342,0.00012145975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028127438,0.0029386994,0.0006840931,0.0019843017,0.0011314992,0.00040848603,0.00058295444,0.0011989886,0.00231119],"category_scores_gemma":[0.0009779745,0.0004254056,0.0006472551,0.0008790285,0.00092339964,0.00033655277,0.0013751693,0.0007007896,0.00045916013],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015823122,0.00038585367,0.27669826,0.0002618359,0.00055831746,0.4537019,0.001817909,0.00054420443,0.23794767,0.0010033976,0.0011923695,0.02430603],"study_design_scores_gemma":[0.00006675214,0.000648609,0.28260073,0.00005186188,0.00031397154,0.6848715,0.00048381757,0.00080211763,0.02700286,0.0005243582,0.0025550537,0.000078362296],"about_ca_topic_score_codex":0.0019080153,"about_ca_topic_score_gemma":0.0015575895,"teacher_disagreement_score":0.0029386994,"about_ca_system_score_codex":0.00041192758,"about_ca_system_score_gemma":0.0003639934,"threshold_uncertainty_score":0.0077317357},"labels":[],"label_agreement":null},{"id":"W4322008828","doi":"10.1038/s41525-023-00351-2","title":"PDGF gene expression and p53 alterations contribute to the biology of diffuse astrocytic gliomas","year":2023,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Glioma Diagnosis and Treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hotchkiss Brain Institute; University of Calgary","funders":"Alberta Innovates; Terry Fox Research Institute; Alberta Cancer Foundation; Genome Canada","keywords":"Biology; Cancer research; Isocitrate dehydrogenase; Mutant; Gene; Platelet-derived growth factor receptor; Gene expression; PDGFB; Mutation; Growth factor; Genetics; Receptor","score_opus":0.02547568239555968,"score_gpt":0.29631209154171323,"score_spread":0.27083640914615353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322008828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99796754,0.0012134801,0.00033580366,0.000021480872,0.0000020665332,0.0000039567003,0.00006934851,0.000009638445,0.0003766832],"genre_scores_gemma":[0.99886346,0.00061095896,0.00022632189,0.000009172761,0.0000049276596,0.0000038229805,0.000071930255,0.0000016423033,0.00020774624],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999392,0.000008535929,0.0000051074003,0.000012610474,0.000018219205,0.000016231346],"domain_scores_gemma":[0.999946,0.00000602322,0.00002613826,0.000004260273,0.000006730078,0.00001095779],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000063578795,0.00013380681,0.00009876828,0.00045053137,0.00008346165,0.00020968847,0.000059993217,0.00013050559,0.0003145195],"category_scores_gemma":[0.00012743614,0.0000861102,0.00006546607,0.0002342709,0.0001393198,0.0001311957,0.00010760609,0.00012411039,0.00009898495],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005492972,0.000026842381,0.084513485,0.00006130112,0.000019917074,0.0007246413,0.00011041876,0.00017621627,0.90100044,0.00015003824,0.000061388586,0.012606016],"study_design_scores_gemma":[0.000011413985,0.00028932377,0.8989474,0.000008868695,0.000053919117,0.004066223,0.00023252098,0.0009007821,0.09372361,0.00026068275,0.0014981134,0.0000070371248],"about_ca_topic_score_codex":0.00041395234,"about_ca_topic_score_gemma":0.0005137317,"teacher_disagreement_score":0.00045053137,"about_ca_system_score_codex":0.00011750389,"about_ca_system_score_gemma":0.00010359269,"threshold_uncertainty_score":0.0010522008},"labels":[],"label_agreement":null},{"id":"W4377942244","doi":"10.1038/s41525-023-00354-z","title":"Author Correction: Possible association of 16p11.2 copy number variation with altered lymphocyte and neutrophil counts","year":2023,"lang":"en","type":"erratum","venue":"npj Genomic Medicine","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Third Health Programme; European Commission","keywords":"Association (psychology); Variation (astronomy); Copy-number variation; Lymphocyte; Immunology; Biology; Genetics; Psychology; Gene; Genome","score_opus":0.009913231716952131,"score_gpt":0.2405346506345628,"score_spread":0.23062141891761068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377942244","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00069660606,0.00090236287,0.0019798526,0.07415255,0.9165369,0.000042593492,0.0018345617,0.00057506707,0.0032796161],"genre_scores_gemma":[0.075560056,0.008056082,0.015209994,0.1531763,0.45953643,0.00034861083,0.005802744,0.0035845344,0.27872512],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969983,0.0006269539,0.0006198182,0.00055001234,0.0009527859,0.00025215984],"domain_scores_gemma":[0.9841868,0.007029139,0.001002955,0.0009675132,0.006204767,0.0006086755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002729117,0.0019201117,0.001574505,0.002467078,0.0021663753,0.0024518357,0.0037422336,0.0066556274,0.050570097],"category_scores_gemma":[0.056164514,0.000988798,0.0015219563,0.0013614376,0.0021190695,0.0014601842,0.0016738088,0.009730892,0.020606803],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058303467,0.0000075725397,0.00024052555,0.00017154803,0.000029716904,0.0023584727,0.00008075936,0.00008502761,0.0001234488,0.00088589615,0.98935246,0.00660622],"study_design_scores_gemma":[0.00009682514,0.000032161286,0.0016278322,0.0006411352,0.000105518986,0.0095850825,0.00019685194,0.00072125334,0.0009945093,0.0035227463,0.98239696,0.000079069345],"about_ca_topic_score_codex":0.012184981,"about_ca_topic_score_gemma":0.01286603,"teacher_disagreement_score":0.050570097,"about_ca_system_score_codex":0.002120855,"about_ca_system_score_gemma":0.002557408,"threshold_uncertainty_score":0.16917384},"labels":[],"label_agreement":null},{"id":"W4384664283","doi":"10.1038/s41525-023-00363-y","title":"Chromatin regulators in the TBX1 network confer risk for conotruncal heart defects in 22q11.2DS","year":2023,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; SickKids Foundation; University Health Network; Centre for Addiction and Mental Health; Hospital for Sick Children","funders":"National Institute of General Medical Sciences; National Institute of Mental Health; Hospital for Sick Children; National Heart, Lung, and Blood Institute; Eunice Kennedy Shriver National Institute of Child Health and Human Development; European Regional Development Fund; Instituto de Salud Carlos III; Medical Research Council; Fonds Wetenschappelijk Onderzoek; National Heart and Lung Institute; Vlaamse regering; Fondation Leducq; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"TBX1; Chromatin; Haploinsufficiency; Biology; Genetics; Gene; Gene regulatory network; DiGeorge syndrome; Transcription factor; Promoter; Phenotype; Gene expression","score_opus":0.023284735113628767,"score_gpt":0.314384290918837,"score_spread":0.29109955580520824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4384664283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987826,0.00036050178,0.0003376283,0.000026794483,0.000005519007,0.0000050863746,0.00020182136,0.000011689098,0.0002684273],"genre_scores_gemma":[0.9991252,0.00012535862,0.00023850721,0.000017850736,0.000008858035,0.0000061898645,0.0002185747,0.000006085397,0.00025343624],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99969065,0.000057123732,0.000029072347,0.00013681034,0.000047364647,0.00003903857],"domain_scores_gemma":[0.99948955,0.00015276829,0.00020768146,0.00003467285,0.000027398311,0.000087858985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023689259,0.0005421196,0.00039791386,0.0011664928,0.000323492,0.0003487683,0.00020817605,0.00041876474,0.003725411],"category_scores_gemma":[0.0009412635,0.00021994436,0.00045077852,0.00064315577,0.00038327495,0.00012825866,0.00032790832,0.00030398983,0.00022472383],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011201813,0.0000642883,0.8623048,0.00008615903,0.00043989092,0.0046988665,0.00042407966,0.00065211236,0.120593965,0.00026591975,0.00029561986,0.009054102],"study_design_scores_gemma":[0.000030013018,0.00009048992,0.9895042,0.000016087915,0.00024364478,0.004845064,0.000110225985,0.0005786629,0.0038399047,0.0001470073,0.0005845163,0.000010299203],"about_ca_topic_score_codex":0.0019597923,"about_ca_topic_score_gemma":0.0017416999,"teacher_disagreement_score":0.003725411,"about_ca_system_score_codex":0.00015583844,"about_ca_system_score_gemma":0.00012834712,"threshold_uncertainty_score":0.012462735},"labels":[],"label_agreement":null},{"id":"W4385810111","doi":"10.1038/s41525-023-00364-x","title":"IHH enhancer variant within neighboring NHEJ1 intron causes microphthalmia anophthalmia and coloboma","year":2023,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Ocular Disorders and Treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"MD Precision (Canada)","funders":"Ministry of Health, State of Israel; Ben-Gurion University of the Negev; Israel Science Foundation; Ministry of Science, Technology and Space; University of Miami","keywords":"Microphthalmia; Anophthalmia; Enhancer; Intron; Coloboma; Genetics; Biology; Gene; Transcription factor","score_opus":0.012334446261128954,"score_gpt":0.26529393471864443,"score_spread":0.2529594884575155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385810111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99912876,0.000096425174,0.00026790058,0.00003109665,0.0000047038916,0.000006815567,0.000043858035,0.000025653137,0.00039486727],"genre_scores_gemma":[0.9993155,0.000073064766,0.0002547255,0.000019615722,0.0000046766554,0.0000036935,0.000053822867,0.000004099951,0.00027087735],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999064,0.000013862339,0.000009864843,0.000022763425,0.000025724326,0.000021258373],"domain_scores_gemma":[0.9999107,0.000025410096,0.000029123652,0.000006020044,0.0000038375324,0.000024938354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000576737,0.00029607562,0.0001642459,0.00037711195,0.00022447565,0.00009774634,0.0001119675,0.00024459657,0.0007326266],"category_scores_gemma":[0.00014620819,0.00012204768,0.00013809743,0.00016822296,0.00032706096,0.00005405313,0.0001641806,0.00026908788,0.00006564536],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004869323,0.00015916121,0.018969899,0.000055531767,0.000035389046,0.02760855,0.00014340617,0.0001919997,0.946959,0.0004142069,0.000147505,0.0048285644],"study_design_scores_gemma":[0.00022265442,0.0020629584,0.48681465,0.00003506307,0.00018928334,0.1696211,0.0003966134,0.0019192355,0.33485562,0.0006912972,0.0031606804,0.00003083006],"about_ca_topic_score_codex":0.00081557233,"about_ca_topic_score_gemma":0.0018013436,"teacher_disagreement_score":0.00081557233,"about_ca_system_score_codex":0.00019230909,"about_ca_system_score_gemma":0.0001392376,"threshold_uncertainty_score":0.0024508834},"labels":[],"label_agreement":null},{"id":"W4386537872","doi":"10.1038/s41525-023-00371-y","title":"Structural variation of the coding and non-coding human pharmacogenome","year":2023,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Horizon 2020 Framework Programme; Vetenskapsrådet; Karolinska Institutet; European Commission; European Federation of Pharmaceutical Industries and Associations; Robert Bosch Stiftung; McGill University","keywords":"ADME; Pharmacogenomics; Biology; Genetic variation; Computational biology; Genetics; Copy-number variation; Gene; Single-nucleotide polymorphism; Coding region; Structural variation; Genetic variability; Genome; Genotype","score_opus":0.01760074540969846,"score_gpt":0.2787894175112718,"score_spread":0.2611886721015733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386537872","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9800062,0.0010426291,0.010034816,0.00012399476,0.000015234484,0.000027973247,0.0075870682,0.000068193905,0.0010939207],"genre_scores_gemma":[0.98845136,0.00032890198,0.0037995167,0.00007032039,0.000019095178,0.000025941888,0.0069650537,0.000031408585,0.00030838075],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991709,0.00019127618,0.00006432504,0.00036662474,0.00014545587,0.00006151868],"domain_scores_gemma":[0.9987908,0.000679208,0.0002544942,0.0001655689,0.00005362476,0.000056430432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005824094,0.0002659502,0.0005039356,0.0013639833,0.00027625033,0.00047017317,0.0002493649,0.00033317966,0.0018659525],"category_scores_gemma":[0.002117495,0.0001461314,0.0005196676,0.0020650318,0.00037285854,0.00018998985,0.0004439276,0.0003752638,0.00030395738],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013811748,0.00012267861,0.64724827,0.00047405311,0.0018650688,0.0027532282,0.0007859192,0.01052534,0.23561831,0.004294121,0.0021530408,0.09277881],"study_design_scores_gemma":[0.000037044505,0.00018528118,0.9623178,0.000048125774,0.0003600934,0.0032159882,0.00014333952,0.009650661,0.012645472,0.0043144026,0.007039298,0.000042378717],"about_ca_topic_score_codex":0.001549149,"about_ca_topic_score_gemma":0.0027341284,"teacher_disagreement_score":0.0018659525,"about_ca_system_score_codex":0.000223505,"about_ca_system_score_gemma":0.0002814356,"threshold_uncertainty_score":0.0062422156},"labels":[],"label_agreement":null},{"id":"W4386752960","doi":"10.1038/s41525-023-00368-7","title":"DNA methylation profiles in individuals with rare, atypical 7q11.23 CNVs correlate with GTF2I and GTF2IRD1 copy number","year":2023,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Williams Syndrome Research","field":"Neuroscience","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia; B.C. Women's Hospital & Health Centre; BC Children's Hospital; University of Toronto","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Neurological Disorders and Stroke; Autism Speaks","keywords":"Epigenetics; DNA methylation; Copy-number variation; Gene duplication; Biology; Methylation; Pyrosequencing; Genetics; Gene; Genome; Human genome; CpG site; DNA; Gene expression","score_opus":0.044548392537405695,"score_gpt":0.3159964079737643,"score_spread":0.27144801543635866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386752960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994844,0.00009656148,0.00012338758,0.000009509341,0.0000011794887,0.000002578054,0.00017804618,0.0000066960247,0.00009761245],"genre_scores_gemma":[0.99946076,0.000040906092,0.00015133935,0.000011660603,0.0000024822643,0.0000054841466,0.00016857253,0.0000031116226,0.00015569683],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998349,0.00002313193,0.000012218115,0.00008208337,0.000025232257,0.000022296608],"domain_scores_gemma":[0.99979573,0.00004949422,0.00007971088,0.000017891289,0.000025548294,0.000031630174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014083541,0.00021016705,0.00026471418,0.00056473556,0.00016807418,0.00022955966,0.00013603478,0.00029867917,0.0012045628],"category_scores_gemma":[0.00085413887,0.00012724138,0.00015518865,0.00033381206,0.00013894105,0.00010365496,0.00018895252,0.00017819364,0.00014179955],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007338293,0.000030361314,0.8851668,0.00003826043,0.00017563261,0.00062796695,0.0006183058,0.00020166991,0.10162597,0.000057980273,0.00018795642,0.010535259],"study_design_scores_gemma":[0.000009311382,0.00014695198,0.9948895,0.000004307131,0.000057580437,0.0015592525,0.00015746141,0.00027557753,0.0025952633,0.000073174495,0.00022522871,0.000006433895],"about_ca_topic_score_codex":0.0022355597,"about_ca_topic_score_gemma":0.002437805,"teacher_disagreement_score":0.0022355597,"about_ca_system_score_codex":0.00013373602,"about_ca_system_score_gemma":0.000054616095,"threshold_uncertainty_score":0.0044450164},"labels":[],"label_agreement":null},{"id":"W4387139189","doi":"10.1038/s41525-023-00370-z","title":"SLCO5A1 and synaptic assembly genes contribute to impulsivity in juvenile myoclonic epilepsy","year":2023,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Krembil Foundation; Public Health Ontario; University of Toronto; Hospital for Sick Children","funders":"Engineering and Physical Sciences Research Council; Medical Research Council; Canadian Institutes of Health Research; Horizon 2020 Framework Programme; Sheffield Children's NHS Foundation Trust; St George's University Hospitals NHS Foundation Trust; Odense Universitetshospital; Eisai; Ministero dell’Istruzione, dell’Università e della Ricerca; Norges Forskningsråd; National Centre for the Replacement, Refinement and Reduction of Animals in Research; European Commission; Action Medical Research; Sheffield Teaching Hospitals NHS Foundation Trust; University of Nottingham; Syddansk Universitet; Canada Research Chairs; Swansea University; Nationwide Children's Hospital; Epilepsy Research UK; National Institute for Health and Care Research; Nottingham University Hospitals NHS Trust; Health and Care Research Wales; Royal Free London NHS Foundation Trust; Medical Research Council Centre for Neurodevelopmental Disorders; GW Pharmaceuticals; University Hospitals Birmingham NHS Foundation Trust; Parc Geneteg Cymru","keywords":"Juvenile myoclonic epilepsy; Impulsivity; Epilepsy; Juvenile; Myoclonic epilepsy; Neuroscience; Psychology; Biology; Psychiatry; Genetics","score_opus":0.011011496448862679,"score_gpt":0.25433295867464717,"score_spread":0.2433214622257845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387139189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994074,0.00010427045,0.0002222657,0.000013450591,8.417706e-7,0.000002636336,0.00015163724,0.0000074048025,0.00009022505],"genre_scores_gemma":[0.999198,0.000054933113,0.00026700323,0.000011241007,0.0000010836997,0.0000044053263,0.0001984453,0.000003830499,0.0002609385],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999201,0.000011840435,0.00000908017,0.000026401687,0.00001848502,0.000014116732],"domain_scores_gemma":[0.9997484,0.0000423044,0.0001375606,0.000012224472,0.00001536967,0.000044138626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011309247,0.00030502627,0.00018589899,0.0006171824,0.00014960983,0.00017356532,0.000122111,0.00016825603,0.0013716109],"category_scores_gemma":[0.00020891197,0.00014459506,0.00026950153,0.00034675043,0.00015617583,0.00006472033,0.00027139825,0.00021859318,0.00007671731],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001064582,0.000082142025,0.36784887,0.00007809292,0.00023059438,0.0017449404,0.0001461402,0.0003250815,0.6219014,0.00010577403,0.00015901052,0.0063133617],"study_design_scores_gemma":[0.000011156887,0.000053838543,0.994086,0.0000044132635,0.000053108237,0.00081502635,0.000035048914,0.00054781954,0.004211425,0.000042730517,0.0001359777,0.000003490626],"about_ca_topic_score_codex":0.0030521078,"about_ca_topic_score_gemma":0.0053901174,"teacher_disagreement_score":0.0030521078,"about_ca_system_score_codex":0.00017175355,"about_ca_system_score_gemma":0.000108446766,"threshold_uncertainty_score":0.0060687065},"labels":[],"label_agreement":null},{"id":"W4391602501","doi":"10.1038/s41525-024-00390-3","title":"A cost-effective sequencing method for genetic studies combining high-depth whole exome and low-depth whole genome","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill Genome Centre; McGill University Health Centre; Mila - Quebec Artificial Intelligence Institute; McGill University","funders":"Alliance de recherche numérique du Canada; Fonds de Recherche du Québec - Santé; Genome Canada; McGill University","keywords":"Exome sequencing; Genotyping; Exome; Whole genome sequencing; Computational biology; Genome; Locus (genetics); Biology; DNA sequencing; Imputation (statistics); 1000 Genomes Project; Population; Genetics; Computer science; Genotype; Gene; Missing data; Single-nucleotide polymorphism; Machine learning; Medicine; Mutation","score_opus":0.04811564951152705,"score_gpt":0.35517519352705873,"score_spread":0.3070595440155317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391602501","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.060620386,0.0027282988,0.92664194,0.001026541,0.00033064053,0.00040739626,0.003275387,0.0025115109,0.002457951],"genre_scores_gemma":[0.12752235,0.0012182721,0.8635389,0.00064910436,0.00012588859,0.0006488256,0.0030937123,0.00029144168,0.0029114627],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977076,0.000813395,0.00010441923,0.0005817234,0.00070198154,0.00009087175],"domain_scores_gemma":[0.99762255,0.0012327448,0.00032672618,0.00039948302,0.00030297507,0.000115522664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025758825,0.0011754906,0.0010680386,0.0016870663,0.0005511004,0.0010263025,0.00102481,0.001579209,0.00504215],"category_scores_gemma":[0.0037789107,0.0008087823,0.0010250468,0.001969266,0.00060952187,0.0012187028,0.0014622896,0.0012220482,0.0021328167],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00092543074,0.0002721118,0.02009325,0.0011271258,0.0012233412,0.0005940176,0.00019616736,0.017348502,0.62740684,0.008735591,0.009550698,0.31252703],"study_design_scores_gemma":[0.00045164596,0.001982596,0.09159259,0.00035736657,0.0012964151,0.009682016,0.00032099575,0.20109642,0.54934454,0.037264228,0.10608496,0.0005261125],"about_ca_topic_score_codex":0.0009919953,"about_ca_topic_score_gemma":0.0028891566,"teacher_disagreement_score":0.00504215,"about_ca_system_score_codex":0.00055089034,"about_ca_system_score_gemma":0.00067429716,"threshold_uncertainty_score":0.016867638},"labels":[],"label_agreement":null},{"id":"W4391809661","doi":"10.1038/s41525-024-00399-8","title":"Eliciting parental preferences and values for the return of additional findings from genomic sequencing","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"National Health and Medical Research Council; Medical Research Council; State Government of Victoria; Murdoch Children's Research Institute; Children’s Hospital of Wisconsin Research Institute","keywords":"Value (mathematics); Genomics; Perspective (graphical); Quality (philosophy); Psychology; Medicine; Computer science; Biology; Genetics; Genome","score_opus":0.021424907037003296,"score_gpt":0.2631963732692511,"score_spread":0.24177146623224782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391809661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990855,0.0000906967,0.0041025397,0.00073248026,0.000013378975,0.00036202386,0.00007117637,0.000014551855,0.0037582344],"genre_scores_gemma":[0.9890133,0.00013429557,0.009866255,0.00020544742,0.000008489659,0.0004401753,0.00003628542,0.000003992315,0.00029180423],"study_design_codex":"observational","study_design_gemma":"qualitative","domain_scores_codex":[0.94928366,0.04502022,0.0011371175,0.0008007311,0.0029347013,0.00082361326],"domain_scores_gemma":[0.84740716,0.13759185,0.008373404,0.0032775558,0.0017883604,0.001561647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03675206,0.00037176642,0.0004432643,0.00051708415,0.0007986143,0.0026948382,0.00046650774,0.0011706973,0.0044704443],"category_scores_gemma":[0.0927256,0.00029847506,0.0006198815,0.00036322165,0.0012160648,0.0014883858,0.0011799498,0.0011819134,0.0003863664],"study_design_candidate":"qualitative","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00804189,0.008605363,0.54694587,0.0013318951,0.00054187933,0.0014386806,0.032287426,0.008369112,0.010651701,0.010444474,0.0023242778,0.3690174],"study_design_scores_gemma":[0.0022472753,0.034572385,0.7611925,0.0015185805,0.00068156555,0.00241925,0.082459,0.032963116,0.018841691,0.042195104,0.020070069,0.00083941314],"about_ca_topic_score_codex":0.0007960743,"about_ca_topic_score_gemma":0.0011713995,"teacher_disagreement_score":0.03675206,"about_ca_system_score_codex":0.0011340205,"about_ca_system_score_gemma":0.0012225681,"threshold_uncertainty_score":0.1943658},"labels":[],"label_agreement":null},{"id":"W4392037327","doi":"10.1038/s41525-024-00403-1","title":"A call for increased inclusivity and global representation in pharmacogenetic testing","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Pharmacogenetics and Drug Metabolism","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Ted Rogers Centre for Heart Research; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children; Sick Kids Foundation","keywords":"Pharmacogenetics; Genetic testing; Dosing; Cohort; Genetic variation; Genetics; Medicine; Adverse effect; Biology; Gene; Genotype; Internal medicine","score_opus":0.18311857179338334,"score_gpt":0.4958389406991425,"score_spread":0.31272036890575916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392037327","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.66449827,0.009450748,0.2325369,0.049656585,0.0015446199,0.000484683,0.0047589038,0.0016119827,0.035457328],"genre_scores_gemma":[0.8877519,0.0017723348,0.0894566,0.013440692,0.0016586881,0.00042146412,0.0022356538,0.0006129744,0.0026497596],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9187999,0.05627998,0.002909836,0.012216654,0.008173561,0.0016201253],"domain_scores_gemma":[0.67847633,0.22898144,0.017724253,0.05511234,0.01691514,0.002790514],"candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.097607285,0.0007389629,0.0017062324,0.003420067,0.0006671056,0.0050239405,0.0025746906,0.002418391,0.0033802523],"category_scores_gemma":[0.16911277,0.0008247729,0.0016375444,0.0037771983,0.0037578694,0.0042320816,0.0047874614,0.0038127548,0.00063489954],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019883837,0.00012506796,0.62721324,0.00091866066,0.0026003348,0.0007455283,0.0048882384,0.007400745,0.011512251,0.015986485,0.013755804,0.31286538],"study_design_scores_gemma":[0.00023761427,0.0010795613,0.8103378,0.0008525642,0.00092812505,0.007014694,0.002225621,0.02483113,0.00911162,0.05513679,0.087979026,0.0002654323],"about_ca_topic_score_codex":0.0020868012,"about_ca_topic_score_gemma":0.0033693977,"teacher_disagreement_score":0.9974253,"about_ca_system_score_codex":0.0011996569,"about_ca_system_score_gemma":0.00089103257,"threshold_uncertainty_score":0.5162028},"labels":[],"label_agreement":null},{"id":"W4392159460","doi":"10.1038/s41525-024-00397-w","title":"DNA and RNA base editors can correct the majority of pathogenic single nucleotide variants","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; Israel Science Foundation; National Institutes of Health; Foundation Fighting Blindness","keywords":"Genetics; RNA; DNA; Nucleotide; Base (topology); Biology; Computational biology; Base pair; Gene; Mathematics","score_opus":0.007698780476835962,"score_gpt":0.25232815451697493,"score_spread":0.24462937404013896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392159460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5998822,0.11488255,0.21503107,0.002998867,0.0032371073,0.0005123914,0.0033484527,0.005870713,0.05423663],"genre_scores_gemma":[0.87573487,0.026530527,0.07834788,0.0011554898,0.00053472456,0.00021289256,0.0025684668,0.0007517905,0.014163481],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99846137,0.0002840743,0.000106125604,0.00036942837,0.0006755826,0.000103386614],"domain_scores_gemma":[0.99865085,0.0004737514,0.0003708279,0.00023294668,0.00019219558,0.00007945878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014143419,0.0007339414,0.00084988476,0.0008223174,0.00053349196,0.0016604884,0.0006388531,0.0011853137,0.004777455],"category_scores_gemma":[0.0036591599,0.00033302247,0.00053146837,0.00045411996,0.0006174734,0.0011699399,0.0007158062,0.001171842,0.0023539562],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003163201,0.00008470144,0.001542327,0.00063237,0.0000835269,0.00049821124,0.00008721431,0.0013985911,0.8864319,0.0033650578,0.0017475905,0.10381232],"study_design_scores_gemma":[0.000041816245,0.00082969235,0.0028634598,0.00008890571,0.00016695786,0.0020338371,0.00008097134,0.003750506,0.90677226,0.0030666974,0.080245234,0.000059647333],"about_ca_topic_score_codex":0.0003051202,"about_ca_topic_score_gemma":0.0006343298,"teacher_disagreement_score":0.004777455,"about_ca_system_score_codex":0.00034299184,"about_ca_system_score_gemma":0.0004260178,"threshold_uncertainty_score":0.01598221},"labels":[],"label_agreement":null},{"id":"W4392388261","doi":"10.1038/s41525-024-00398-9","title":"Bi-allelic variants in CELSR3 are implicated in central nervous system and urinary tract anomalies","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; McGill University","funders":"Leibniz-Gemeinschaft; Medical Research Council; Friedrich-Alexander-Universität Erlangen-Nürnberg; Rheinische Friedrich-Wilhelms-Universität Bonn; National Human Genome Research Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Else Kröner-Fresenius-Stiftung; Novo Nordisk Fonden; National Institute of Diabetes and Digestive and Kidney Diseases; ZonMw; Deutsche Forschungsgemeinschaft; National Institutes of Health; Yale University; National Institute of Neurological Disorders and Stroke; National Institute for Health and Care Research; Muscular Dystrophy Association","keywords":"Urinary system; Allele; Central nervous system; Biology; Genetics; Medicine; Neuroscience; Gene; Anatomy","score_opus":0.010276657876512225,"score_gpt":0.23862211425296925,"score_spread":0.22834545637645703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392388261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786854,0.00021441666,0.00084488734,0.00005303714,0.0000074083564,0.000010381271,0.00022228036,0.000028384484,0.0007507381],"genre_scores_gemma":[0.99801636,0.000119539654,0.0009940845,0.000037968923,0.000008738751,0.0000063924062,0.0002314865,0.000017058548,0.000568399],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994893,0.000068420915,0.00007224056,0.00015593624,0.00014062242,0.00007346053],"domain_scores_gemma":[0.9994325,0.00014299505,0.00019335092,0.000047952188,0.000039283124,0.00014385307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024628732,0.0010636699,0.0005172106,0.0016336318,0.00061755726,0.00041832068,0.00049180083,0.0006894837,0.0056958254],"category_scores_gemma":[0.00089678384,0.0003481705,0.00056391745,0.0012086424,0.00087041396,0.00023026379,0.0011034933,0.00051968,0.0005140611],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022689218,0.00021667026,0.3734002,0.00021214296,0.00054127286,0.13930069,0.0021671446,0.0008265828,0.4441533,0.0020374863,0.0007517915,0.034123696],"study_design_scores_gemma":[0.00009375433,0.0003818781,0.59776604,0.00007233251,0.00037452305,0.35795313,0.0009326417,0.0013073279,0.035278395,0.0008873549,0.0048677484,0.00008495456],"about_ca_topic_score_codex":0.0015829742,"about_ca_topic_score_gemma":0.002325708,"teacher_disagreement_score":0.0056958254,"about_ca_system_score_codex":0.00024797863,"about_ca_system_score_gemma":0.0002432818,"threshold_uncertainty_score":0.019054413},"labels":[],"label_agreement":null},{"id":"W4392450437","doi":"10.1038/s41525-024-00395-y","title":"Genome-wide association analyses of ovarian cancer patients undergoing primary debulking surgery identify candidate genes for residual disease","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of British Columbia; University Health Network","funders":"Medical Research and Materiel Command; National Cancer Institute; Instituto de Salud Carlos III; Canadian Institutes of Health Research; Cancer Institute NSW; Ovarian Cancer Research Fund; Cancer Australia; National Institute for Health and Care Research; National Health and Medical Research Council; Norges Forskningsråd; Moffitt Cancer Center; Minnesota Ovarian Cancer Alliance; Wellcome Trust; Cancer Research UK; National Center for Research Resources; BC Cancer Foundation; Fred C. and Katherine B. Andersen Foundation; Helse Vest; Ovarian Cancer Australia; National Center for Advancing Translational Sciences; Medical Research Council; Cancer Research Society; Mayo Foundation for Medical Education and Research; Ministerio de Economía y Competitividad; University of Pittsburgh; National Institutes of Health; European Commission; U.S. Department of Defense","keywords":"Debulking; Ovarian cancer; Disease; Medicine; Genome-wide association study; Oncology; Gene; Candidate gene; Genetic association; Internal medicine; Biology; Bioinformatics; Cancer; Genetics; Genotype; Single-nucleotide polymorphism","score_opus":0.04311196093886641,"score_gpt":0.339936937273058,"score_spread":0.2968249763341916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392450437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99882275,0.00039003522,0.00017508028,0.00003724149,0.0000063165703,0.0000024985916,0.00032407313,0.0000070767605,0.00023495029],"genre_scores_gemma":[0.9995962,0.000048353715,0.000067661334,0.0000095763235,0.000004158589,0.0000015244968,0.00019931296,0.0000016553687,0.000071644354],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996573,0.00010621239,0.00002908968,0.00010246807,0.000046489968,0.00005844967],"domain_scores_gemma":[0.9992612,0.00027052706,0.0002515311,0.00009011554,0.000038778027,0.00008774406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003686283,0.00019116407,0.00028363528,0.00047924262,0.00023383263,0.00035930052,0.00021654385,0.00026712782,0.0016470961],"category_scores_gemma":[0.0014087256,0.00012554218,0.0005117813,0.00079648395,0.00025070898,0.00009110023,0.00030130413,0.00033036873,0.00011930311],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058365293,0.000018865607,0.9904199,0.000021965321,0.0004405937,0.00020607187,0.00004995274,0.00013210729,0.0048388555,0.00003885162,0.00016076007,0.003088382],"study_design_scores_gemma":[0.00001212663,0.000054650747,0.9988248,0.0000027215365,0.00011402574,0.00021907069,0.000027494776,0.000228304,0.00030181799,0.00003128318,0.00018180626,0.00000189153],"about_ca_topic_score_codex":0.0035996588,"about_ca_topic_score_gemma":0.0057408763,"teacher_disagreement_score":0.0035996588,"about_ca_system_score_codex":0.00012013487,"about_ca_system_score_gemma":0.00014914534,"threshold_uncertainty_score":0.007157445},"labels":[],"label_agreement":null},{"id":"W4393222223","doi":"10.1038/s41525-024-00410-2","title":"Advancing access to genome sequencing for rare genetic disorders: recent progress and call to action","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Call to action; Genome; Action (physics); DNA sequencing; Computational biology; Genetics; Biology; DNA; Gene; Business","score_opus":0.022094922130785587,"score_gpt":0.32569802002834225,"score_spread":0.3036030978975567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393222223","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002421472,0.23163596,0.01911161,0.72505957,0.012856718,0.00014509771,0.0010730118,0.0009389402,0.0067576235],"genre_scores_gemma":[0.04253331,0.58554536,0.058089804,0.25724584,0.045538317,0.0005778953,0.0046521164,0.00059580087,0.005221564],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9800931,0.008163809,0.0013905128,0.0023051444,0.005643083,0.0024044202],"domain_scores_gemma":[0.78648984,0.14253166,0.0070890407,0.003943563,0.027853556,0.03209228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.060496777,0.0021551186,0.0030426017,0.004768546,0.0022557375,0.007799004,0.0062168366,0.015744971,0.034832057],"category_scores_gemma":[0.1183948,0.0010345993,0.0026933237,0.003282774,0.006292767,0.017266607,0.011609256,0.020262802,0.007676234],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008991043,0.00030339663,0.007395242,0.008244694,0.00031560252,0.0004733033,0.0011651469,0.0024595982,0.0016546121,0.025573399,0.43281472,0.5187012],"study_design_scores_gemma":[0.00024796545,0.0005708364,0.012238273,0.013765852,0.0004202279,0.0012524397,0.002717204,0.0031836298,0.000794913,0.054221466,0.91031784,0.00026935912],"about_ca_topic_score_codex":0.017427104,"about_ca_topic_score_gemma":0.026745392,"teacher_disagreement_score":0.060496777,"about_ca_system_score_codex":0.005877262,"about_ca_system_score_gemma":0.021183008,"threshold_uncertainty_score":0.31994134},"labels":[],"label_agreement":null},{"id":"W4393223713","doi":"10.1038/s41525-024-00405-z","title":"Genomic and clinical characterization of a familial GIST kindred intolerant to imatinib","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Gastrointestinal Tumor Research and Treatment","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Sinai Health System; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"Garron Family Cancer Centre; Hospital for Sick Children; Princess Margaret Cancer Foundation","keywords":"GiST; Imatinib; Proband; Exon; Germline; Stromal tumor; Germline mutation; Genetics; Biology; Cancer research; Carcinogenesis; Medicine; Gene; Mutation; Stromal cell","score_opus":0.045398943450986676,"score_gpt":0.3700067978052819,"score_spread":0.32460785435429523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393223713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982162,0.00014431463,0.00035196598,0.0001638918,0.000007238435,0.000012400977,0.00011169855,0.000018422783,0.00097384944],"genre_scores_gemma":[0.99921,0.00008304781,0.00032286922,0.00005747596,0.000019340754,0.000004590928,0.00010073454,0.000006463105,0.00019549292],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.999833,0.000023301665,0.000019811128,0.00005592642,0.00003825693,0.000029701534],"domain_scores_gemma":[0.9995857,0.00014159658,0.00009627489,0.000028759083,0.00003252373,0.00011515773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015730556,0.00061602704,0.0003101743,0.0009127776,0.0005663009,0.00032323334,0.0002784018,0.0006402401,0.0015210927],"category_scores_gemma":[0.0011171098,0.00026402605,0.0003203004,0.00056966784,0.000578611,0.00020276527,0.0004570945,0.0003640087,0.00022529537],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023815053,0.00007824186,0.10798293,0.000047395028,0.00006246723,0.84544307,0.001184334,0.00033517045,0.037169524,0.00039006336,0.0006114351,0.0064571425],"study_design_scores_gemma":[0.000028659924,0.00019970229,0.17323008,0.000016500504,0.00007442948,0.82073045,0.0003739588,0.0005726693,0.0028973904,0.00022743079,0.001629075,0.00001954202],"about_ca_topic_score_codex":0.0012879432,"about_ca_topic_score_gemma":0.0012098155,"teacher_disagreement_score":0.0015210927,"about_ca_system_score_codex":0.00022155303,"about_ca_system_score_gemma":0.00019483507,"threshold_uncertainty_score":0.005088508},"labels":[],"label_agreement":null},{"id":"W4393863271","doi":"10.1038/s41525-024-00412-0","title":"Strategies to improve implementation of cascade testing in hereditary cancer syndromes: a systematic review","year":2024,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Medical Research Council; Medical Research Council; National Research Foundation Singapore; Terry Fox Foundation; National Cancer Centre of Singapore","keywords":"Psychological intervention; Checklist; Fidelity; Medicine; Systematic review; Computer science; MEDLINE; Psychology; Nursing; Biology","score_opus":0.05663165574524442,"score_gpt":0.4135192766484689,"score_spread":0.35688762090322446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393863271","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0022189387,0.9909679,0.0008382712,0.0014166855,0.00021916977,0.0030838614,0.0006168928,0.000049004087,0.0005892333],"genre_scores_gemma":[0.01938982,0.97048235,0.005000049,0.000984885,0.00008087482,0.0034836016,0.00039842946,0.000011347757,0.00016865924],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.97927123,0.010531204,0.00612419,0.00076400273,0.0028600895,0.00044930069],"domain_scores_gemma":[0.9358304,0.04452903,0.011101421,0.0009556188,0.0067082057,0.0008753009],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.028663492,0.0019068706,0.007436414,0.015224889,0.0008175961,0.0029588917,0.002407717,0.0019117447,0.004317237],"category_scores_gemma":[0.10025097,0.0013012462,0.008414438,0.012121957,0.00084229436,0.0047396366,0.0021294542,0.0016886427,0.00037148103],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014359505,0.000045289882,0.0009879506,0.90688133,0.0046343813,0.000075557575,0.0004088353,0.00016102892,0.00009645187,0.0002863509,0.0018948113,0.084384374],"study_design_scores_gemma":[0.00030279058,0.000180591,0.002850343,0.9592499,0.024232438,0.0001268552,0.00047923575,0.0001504232,0.0001314676,0.00025881792,0.012002355,0.00003480211],"about_ca_topic_score_codex":0.014445191,"about_ca_topic_score_gemma":0.043045864,"teacher_disagreement_score":0.028663492,"about_ca_system_score_codex":0.007112756,"about_ca_system_score_gemma":0.033151995,"threshold_uncertainty_score":0.1515888},"labels":[],"label_agreement":null},{"id":"W4394013616","doi":"10.1038/s41525-024-00408-w","title":"Consensus reporting guidelines to address gaps in descriptions of ultra-rare genetic conditions","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Holland Bloorview Kids Rehabilitation Hospital; SickKids Foundation; University of Toronto","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Canadian Institutes of Health Research; Sickkids Research Institute; Hospital for Sick Children; State Government of Victoria; Government of Canada; Children's Hospital Foundation; Royal Children's Hospital Foundation; Murdoch Children's Research Institute; Medical Research Council; Children’s Hospital of Wisconsin Research Institute; University of Toronto; McLaughlin Centre, University of Toronto","keywords":"Guideline; OMIM : Online Mendelian Inheritance in Man; Medical diagnosis; Delphi method; MEDLINE; Medicine; Phenotype; Psychology; Biology; Genetics; Computer science; Pathology","score_opus":0.047342367604541934,"score_gpt":0.3446772270961673,"score_spread":0.2973348594916254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394013616","genre_codex":"protocol","genre_gemma":"methods","domain_codex":null,"domain_gemma":"reporting","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":"reporting","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014364109,0.0504157,0.2749114,0.1316585,0.012854978,0.42726272,0.028543893,0.003490813,0.05649786],"genre_scores_gemma":[0.029051675,0.023737486,0.4359396,0.013496737,0.001530808,0.47536767,0.015322076,0.00070815545,0.004845728],"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.44495896,0.23891315,0.27047634,0.008760238,0.031336706,0.0055546495],"domain_scores_gemma":[0.21732976,0.39966252,0.07823007,0.03583064,0.26254258,0.0064043826],"candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.44493636,0.003746515,0.0065081716,0.042336613,0.006532036,0.010859323,0.012071287,0.010285855,0.014237402],"category_scores_gemma":[0.59744203,0.0038624406,0.011953285,0.021647122,0.005557025,0.012739399,0.019406803,0.008197852,0.0076405783],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068085175,0.00028179068,0.0052789263,0.21129768,0.0011272648,0.0017067663,0.06146044,0.0021831559,0.0051417192,0.04034632,0.24451391,0.42598113],"study_design_scores_gemma":[0.0008214723,0.00036662281,0.004484218,0.2934025,0.000990453,0.0014956655,0.021599993,0.002192938,0.0029966848,0.042417057,0.6287972,0.00043522363],"about_ca_topic_score_codex":0.0046802782,"about_ca_topic_score_gemma":0.0038783834,"teacher_disagreement_score":0.5550636,"about_ca_system_score_codex":0.010898615,"about_ca_system_score_gemma":0.054621827,"threshold_uncertainty_score":0.6844923},"labels":[],"label_agreement":null},{"id":"W4399153928","doi":"10.1038/s41525-024-00419-7","title":"Pharmacogenomics of coronary artery response to intravenous gamma globulin in kawasaki disease","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Kawasaki Disease and Coronary Complications","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Kawasaki disease; Pharmacogenomics; Coronary artery disease; Medicine; Intergenic region; Single-nucleotide polymorphism; Internal medicine; Acute coronary syndrome; Logistic regression; Genotype; Gene; Artery; Biology; Genetics; Genome; Pharmacology","score_opus":0.024283051285977682,"score_gpt":0.31412494928284956,"score_spread":0.2898418979968719,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399153928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977246,0.0008359411,0.00043779027,0.00014849429,0.000007452842,0.000007660897,0.00052611314,0.000009183805,0.00030272704],"genre_scores_gemma":[0.99898726,0.00019300674,0.00022995916,0.00006503056,0.000014409435,0.0000072676917,0.00036037416,0.0000047557255,0.00013794792],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994344,0.00026124375,0.00003440126,0.00013573004,0.00007501453,0.000059072718],"domain_scores_gemma":[0.9991042,0.00040406373,0.0002872168,0.00006262419,0.00005922138,0.00008256081],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068987283,0.0002382067,0.00043446457,0.00056908175,0.00017057748,0.00041729686,0.00020448136,0.00045500175,0.00095020427],"category_scores_gemma":[0.0017719084,0.00011282911,0.00055462075,0.0010542088,0.0001878542,0.00013057953,0.00023279844,0.000403681,0.000116011564],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010172515,0.0000611452,0.9823056,0.000043628712,0.0008900831,0.00026458784,0.00007464566,0.0006630533,0.0066117574,0.00011088343,0.00023264087,0.0077246595],"study_design_scores_gemma":[0.0000130578255,0.00009870416,0.9980445,0.000004859894,0.00015187534,0.00016927834,0.000026044854,0.0008938203,0.00024493152,0.00013738785,0.00021184466,0.0000036377448],"about_ca_topic_score_codex":0.0021745989,"about_ca_topic_score_gemma":0.0014584013,"teacher_disagreement_score":0.0021745989,"about_ca_system_score_codex":0.0001935973,"about_ca_system_score_gemma":0.00016619117,"threshold_uncertainty_score":0.0043238997},"labels":[],"label_agreement":null},{"id":"W4402937932","doi":"10.1038/s41525-024-00426-8","title":"Polygenic scores stratify neurodevelopmental copy number variant carrier cognitive outcomes in the UK Biobank","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Centre for Addiction and Mental Health; SickKids Foundation; Hospital for Sick Children","funders":"Medical Research Council; Innovative Medicines Initiative","keywords":"Biobank; Polygenic risk score; Cognition; Copy-number variation; Medicine; Genetics; Biology; Psychiatry; Single-nucleotide polymorphism; Genotype; Genome; Gene","score_opus":0.012840193983293693,"score_gpt":0.27148183996082415,"score_spread":0.2586416459775305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402937932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99342763,0.0003196186,0.00045491598,0.00013711194,0.000012355642,0.000020235355,0.004522037,0.000014945311,0.0010911723],"genre_scores_gemma":[0.99497426,0.00016727991,0.00041355414,0.000050054587,0.000009407615,0.000025161129,0.0038118146,0.0000073268047,0.00054121163],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99895346,0.00035285496,0.00015687649,0.0002462789,0.00017727981,0.00011319213],"domain_scores_gemma":[0.9966953,0.0010434382,0.0013106014,0.00046027638,0.0002935457,0.0001967578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010858756,0.0003253958,0.00039977045,0.0017868596,0.00040216037,0.00077130797,0.00040477887,0.0004981704,0.0028824336],"category_scores_gemma":[0.008856417,0.00016523096,0.00032507148,0.0017692635,0.000251648,0.000392119,0.0011384208,0.00034652243,0.0005998731],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024896988,0.00001669952,0.992132,0.000022641367,0.00012312684,0.00031622875,0.000220032,0.00017957427,0.00090257905,0.00012034381,0.0010148041,0.0047030114],"study_design_scores_gemma":[0.0000117527925,0.000041419375,0.9982438,0.00001754464,0.000038766822,0.0003688396,0.00006283888,0.00027814272,0.00017040508,0.00007625633,0.00068512134,0.0000050845906],"about_ca_topic_score_codex":0.027474908,"about_ca_topic_score_gemma":0.023967907,"teacher_disagreement_score":0.027474908,"about_ca_system_score_codex":0.00043776046,"about_ca_system_score_gemma":0.00031412306,"threshold_uncertainty_score":0.05462998},"labels":[],"label_agreement":null},{"id":"W4403781730","doi":"10.1038/s41525-024-00436-6","title":"Comprehensive reanalysis for CNVs in ES data from unsolved rare disease cases results in new diagnoses","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"Instituto de Salud Carlos III; European Regional Development Fund; Horizon 2020 Framework Programme; Generalitat de Catalunya; Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España; Eberhard Karls Universität Tübingen; European Commission; Centres de Recerca de Catalunya","keywords":"Medical diagnosis; Disease; Computer science; Medicine; Internal medicine; Pathology","score_opus":0.0668167493459994,"score_gpt":0.3162028867476896,"score_spread":0.2493861374016902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403781730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9484605,0.001449524,0.033066608,0.00027763934,0.00006797904,0.0002718526,0.014314913,0.00048712353,0.0016038717],"genre_scores_gemma":[0.8942979,0.00056045013,0.059470784,0.00017877283,0.00007116601,0.00022333948,0.043775216,0.00033613766,0.0010862025],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.995564,0.0010664733,0.00057952444,0.0012981808,0.0011228344,0.0003690575],"domain_scores_gemma":[0.98764706,0.0058122645,0.00088021375,0.002901653,0.0023580105,0.00040082773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00441756,0.00084943586,0.0011561547,0.0062447237,0.0007151231,0.0018891727,0.0010104447,0.0005374879,0.0025595801],"category_scores_gemma":[0.01861659,0.00033393266,0.001610372,0.0037866966,0.0005506145,0.0004772277,0.0017567682,0.00068897073,0.001120506],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009570796,0.00010556062,0.75996006,0.00055937923,0.0019157343,0.0047002323,0.0019802065,0.007075342,0.058023453,0.00078995485,0.0044507827,0.15948214],"study_design_scores_gemma":[0.000098047174,0.0002011078,0.91498,0.000259747,0.0017246136,0.0066909953,0.0018322909,0.0197934,0.028186455,0.0020029882,0.024080418,0.0001499413],"about_ca_topic_score_codex":0.0051378314,"about_ca_topic_score_gemma":0.009452461,"teacher_disagreement_score":0.0062447237,"about_ca_system_score_codex":0.00055031833,"about_ca_system_score_gemma":0.0010539041,"threshold_uncertainty_score":0.023362517},"labels":[],"label_agreement":null},{"id":"W4404073942","doi":"10.1038/s41525-024-00443-7","title":"Genomic variations associated with risk and protection against vincristine-induced peripheral neuropathy in pediatric cancer patients","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Cancer Treatment and Pharmacology","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Children's Hospital of Eastern Ontario; Centre Hospitalier Universitaire Sainte-Justine; London Health Sciences Centre; Alberta Children's Hospital; Hospital for Sick Children; University of British Columbia; Stollery Children's Hospital; BC Children's Hospital; Health Sciences Centre","funders":"Canadian Institutes of Health Research; Health Canada; University of British Columbia; Centers for Disease Control and Prevention; Genome British Columbia; BC Children’s Hospital Foundation; Michael Smith Health Research BC; BC Children's Hospital; Provincial Health Services Authority; Genome Canada; International Association for the Study of Pain; Government of Canada; Children's Hospital Foundation; U.S. Department of Health and Human Services","keywords":"Peripheral neuropathy; Medicine; Vincristine; Cancer; Internal medicine; Oncology; Genetics; Bioinformatics; Chemotherapy; Biology; Endocrinology; Diabetes mellitus; Cyclophosphamide","score_opus":0.018750058743133857,"score_gpt":0.28043040614022746,"score_spread":0.2616803473970936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404073942","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987729,0.00023091907,0.00012205388,0.00005280437,0.0000024282829,0.000005742247,0.00038700132,0.0000074787176,0.00041865496],"genre_scores_gemma":[0.9992411,0.00014323392,0.00018313907,0.000016996873,0.000004750152,0.000005255994,0.00030071073,0.0000039291685,0.00010083774],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99979764,0.00005094393,0.000020292291,0.0000616103,0.000038064885,0.000031495114],"domain_scores_gemma":[0.9994997,0.00018424679,0.00022182056,0.000022281545,0.000025761285,0.000046133046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016667297,0.0001816071,0.0002095084,0.0005604065,0.0002057944,0.0002369938,0.00016399629,0.0002935911,0.0021829884],"category_scores_gemma":[0.0011975898,0.0001300818,0.00022659311,0.0009835397,0.00019781642,0.00011415003,0.00014605979,0.00024687554,0.000118843935],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000802245,0.000041096646,0.97542804,0.000052648193,0.0001624048,0.0016663296,0.00026076083,0.00048323363,0.0076393327,0.00018696708,0.00048129627,0.01279561],"study_design_scores_gemma":[0.00003103324,0.00012373172,0.99549234,0.000011835044,0.00008870351,0.0024214892,0.0000869152,0.00026979164,0.0007846362,0.00007788822,0.0006072246,0.000004335402],"about_ca_topic_score_codex":0.003900436,"about_ca_topic_score_gemma":0.003163957,"teacher_disagreement_score":0.003900436,"about_ca_system_score_codex":0.00021745836,"about_ca_system_score_gemma":0.00018344929,"threshold_uncertainty_score":0.0077554584},"labels":[],"label_agreement":null},{"id":"W4404165616","doi":"10.1038/s41525-024-00439-3","title":"Coding and non-coding variants in the ciliopathy gene CFAP410 cause early-onset non-syndromic retinal degeneration","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"RNA regulation and disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Eye Institute; National Human Genome Research Institute; University of California, San Diego; Radboud Universitair Medisch Centrum; Centre National de la Recherche Scientifique; Radboud Universiteit; Agence Nationale de la Recherche; Foundation Fighting Blindness; Broad Institute; Institut National de la Santé et de la Recherche Médicale; U.S. Department of Health and Human Services","keywords":"Ciliopathy; Coding (social sciences); Gene; Retinal; Retinal degeneration; Biology; Coding region; Genetics; Computational biology; Medicine; Ophthalmology","score_opus":0.015059949114135157,"score_gpt":0.26001615959894236,"score_spread":0.2449562104848072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404165616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99916565,0.0002538212,0.00025660876,0.000010059371,0.0000024992967,0.0000053677604,0.000057624886,0.000005847011,0.00024251269],"genre_scores_gemma":[0.9995964,0.00008420776,0.00012621953,0.000011255338,0.0000027573374,0.0000021314834,0.00004675176,0.000002884337,0.00012735405],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99966407,0.000057729667,0.00004416496,0.00009395935,0.00008054786,0.000059496466],"domain_scores_gemma":[0.99926966,0.00027968973,0.00020961983,0.00007628491,0.000066155226,0.000098568366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025538696,0.00048581176,0.0002461845,0.0009877288,0.0005255793,0.00026160403,0.00026512815,0.00043459964,0.0015871918],"category_scores_gemma":[0.0015896481,0.00021296246,0.0002728561,0.0004371421,0.0004556094,0.00015941956,0.00045042098,0.00027172267,0.00023283795],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047521535,0.00007926448,0.86772454,0.00006868429,0.00011565196,0.06507354,0.00058061857,0.00021269459,0.052150294,0.0001652885,0.00019130221,0.013162997],"study_design_scores_gemma":[0.000025632207,0.00036803173,0.75012493,0.00002915049,0.00014372723,0.23682174,0.00038400322,0.00044273428,0.010261118,0.00016187452,0.0012169388,0.000020245365],"about_ca_topic_score_codex":0.0012773619,"about_ca_topic_score_gemma":0.001754607,"teacher_disagreement_score":0.0015871918,"about_ca_system_score_codex":0.00015744587,"about_ca_system_score_gemma":0.0001827508,"threshold_uncertainty_score":0.0053096414},"labels":[],"label_agreement":null},{"id":"W4405573003","doi":"10.1038/s41525-024-00451-7","title":"Implementing genomic newborn screening as an effective public health intervention: sidestepping the hype and criticism","year":2024,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of British Columbia Hospital","funders":"","keywords":"Newborn screening; Intervention (counseling); Public health; Criticism; Genomic sequencing; Genome; DNA sequencing; Medicine; Internet privacy; Genetics; Biology; Political science; Computer science; DNA; Gene; Law; Nursing","score_opus":0.023713415404999435,"score_gpt":0.3275144574304012,"score_spread":0.30380104202540176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405573003","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003280774,0.009660109,0.0022477247,0.97935516,0.0061509036,0.000028000126,0.000016085793,0.000048084577,0.0021657746],"genre_scores_gemma":[0.022325812,0.01219499,0.008029037,0.9396861,0.015862875,0.00027967663,0.00002363703,0.00015918362,0.0014387056],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.8097929,0.12801243,0.009098326,0.011205571,0.0376802,0.0042105876],"domain_scores_gemma":[0.5126667,0.42668507,0.0069627766,0.01479981,0.02968454,0.009201184],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.2090642,0.0022872917,0.0033519524,0.003220786,0.0046024323,0.014808555,0.011115601,0.045195565,0.0051753656],"category_scores_gemma":[0.34322974,0.0011691699,0.002902029,0.0017062374,0.05816916,0.019304438,0.015589567,0.07993761,0.0021705301],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035387537,0.00034182525,0.0015103953,0.0034055286,0.00043914822,0.00064356776,0.005286214,0.0017673575,0.00066801027,0.4302702,0.37824336,0.17707051],"study_design_scores_gemma":[0.00052086817,0.00043805857,0.0015771228,0.010114714,0.0003016964,0.00049470726,0.002721139,0.0028284104,0.0013915267,0.43151224,0.5478259,0.00027355878],"about_ca_topic_score_codex":0.0066159354,"about_ca_topic_score_gemma":0.004115902,"teacher_disagreement_score":0.2090642,"about_ca_system_score_codex":0.011965443,"about_ca_system_score_gemma":0.02331363,"threshold_uncertainty_score":0.9753646},"labels":[],"label_agreement":null},{"id":"W4406313043","doi":"10.1038/s41525-024-00453-5","title":"Pre-T cell receptor-α immunodeficiency detected exclusively using whole genome sequencing","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"Immunodeficiency Canada","keywords":"T-cell receptor; Exome sequencing; Whole genome sequencing; Biology; T cell; Immunodeficiency; Genome; Genetics; DNA sequencing; Computational biology; Gene; Cell; Mutation; Immune system","score_opus":0.014130770867769217,"score_gpt":0.24730549168168126,"score_spread":0.23317472081391205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406313043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9452744,0.003719792,0.03438258,0.0006688209,0.00006793766,0.00014191262,0.00489413,0.00039027332,0.010460175],"genre_scores_gemma":[0.9733078,0.002526385,0.019461818,0.00034607135,0.000030331164,0.000041288677,0.0026424336,0.00009854063,0.0015453506],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99976367,0.00003900733,0.000022790518,0.0000784104,0.00006450798,0.000031719723],"domain_scores_gemma":[0.9997279,0.00010992622,0.000044747056,0.00004227038,0.000041960233,0.00003324764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002333231,0.00039930386,0.00025452595,0.0009371315,0.00016693889,0.00042665706,0.00020570023,0.00058736914,0.001103529],"category_scores_gemma":[0.0006155628,0.00013043368,0.00028148096,0.00052778644,0.00030750493,0.00017761452,0.00043528582,0.0003569361,0.00033177357],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030489702,0.000053758475,0.057258133,0.0003211295,0.00014680735,0.035397325,0.0005346779,0.0009507669,0.83713114,0.0014683737,0.0012966264,0.06513642],"study_design_scores_gemma":[0.000029475681,0.00037747438,0.34897095,0.0003029718,0.0005289824,0.16987287,0.00074831507,0.00787574,0.4178343,0.0027821937,0.050634827,0.000041839405],"about_ca_topic_score_codex":0.0008189529,"about_ca_topic_score_gemma":0.0015229472,"teacher_disagreement_score":0.001103529,"about_ca_system_score_codex":0.00015228707,"about_ca_system_score_gemma":0.00015493139,"threshold_uncertainty_score":0.0036916733},"labels":[],"label_agreement":null},{"id":"W4407822175","doi":"10.1038/s41525-025-00478-4","title":"Copy number variant analysis improves diagnostic yield in a diverse pediatric exome sequencing cohort","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; University of Toronto","funders":"Children's Hospital Los Angeles","keywords":"Exome sequencing; Copy-number variation; DNA sequencing; Cohort; Computational biology; Genetics; Medicine; Biology; Internal medicine; Mutation; Gene; Genome","score_opus":0.008550493088987794,"score_gpt":0.2522854137141229,"score_spread":0.2437349206251351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407822175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99754936,0.00022671235,0.0011875139,0.000057383833,0.0000055760515,0.000015484839,0.0004599467,0.000023926617,0.00047407582],"genre_scores_gemma":[0.9976814,0.00014778615,0.0012902829,0.000036778147,0.000014491865,0.0000121355615,0.0007278397,0.000018564797,0.000070704504],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99740463,0.0009592791,0.00026289286,0.0007613858,0.00043399667,0.00017786863],"domain_scores_gemma":[0.9934282,0.0036942232,0.0008622771,0.0008435501,0.00075325,0.00041849894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0038347414,0.0004383823,0.0004993218,0.0015248451,0.00040007525,0.0009818278,0.00045923216,0.00044306472,0.0012602402],"category_scores_gemma":[0.01765102,0.00017969958,0.00033036998,0.00084773987,0.00030425627,0.0006662745,0.0014389661,0.00042081985,0.00035094563],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017642892,0.00001748016,0.9882781,0.000008618741,0.000047785437,0.00085309107,0.00018223765,0.00018352215,0.0024401178,0.000041801686,0.00019087852,0.00758005],"study_design_scores_gemma":[0.00001735226,0.00015358282,0.9865383,0.000018385515,0.00013867406,0.0072230794,0.00034296486,0.002583069,0.0016583963,0.00018188717,0.0011300651,0.000014369897],"about_ca_topic_score_codex":0.0013548345,"about_ca_topic_score_gemma":0.0018994125,"teacher_disagreement_score":0.0038347414,"about_ca_system_score_codex":0.00023031933,"about_ca_system_score_gemma":0.00032044304,"threshold_uncertainty_score":0.020280302},"labels":[],"label_agreement":null},{"id":"W4408062463","doi":"10.1038/s41525-025-00474-8","title":"International Precision Child Health Partnership (IPCHiP): an initiative to accelerate discovery and improve outcomes in rare pediatric disease","year":2025,"lang":"en","type":"review","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","keywords":"General partnership; Child health; Rare disease; Medicine; Disease; Pediatrics; Business; Internal medicine; Finance","score_opus":0.038122770592681134,"score_gpt":0.36557621290237335,"score_spread":0.3274534423096922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408062463","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006616785,0.99190956,0.0004424282,0.003583438,0.001424976,0.000013188792,0.000049214836,0.000027497215,0.0024834974],"genre_scores_gemma":[0.0005812244,0.99540436,0.0006526853,0.001746404,0.0006920877,0.000018428444,0.00009219321,0.0000060994093,0.00080653426],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991059,0.00026783082,0.00009200805,0.000090409165,0.0003337665,0.00011005685],"domain_scores_gemma":[0.997299,0.0014698723,0.00023137263,0.00006551951,0.00059863593,0.00033566036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003693848,0.00076046877,0.0011703076,0.0027662748,0.00045407822,0.0015912433,0.0014492135,0.0025607978,0.0046932753],"category_scores_gemma":[0.0038204817,0.00021063408,0.00084449473,0.0025932095,0.00072768383,0.0018414888,0.002071904,0.004806255,0.002110944],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005110013,0.000038410297,0.00016175566,0.009360173,0.0001066435,0.00022917877,0.0000649237,0.00022745384,0.00038604878,0.012565508,0.08798895,0.88881975],"study_design_scores_gemma":[0.000017141732,0.00003747592,0.00034851907,0.0046924474,0.00005419395,0.0005452644,0.000033712007,0.000044491957,0.0001492979,0.0027562962,0.9913106,0.000010667483],"about_ca_topic_score_codex":0.0017348678,"about_ca_topic_score_gemma":0.0032474403,"teacher_disagreement_score":0.0046932753,"about_ca_system_score_codex":0.0015420148,"about_ca_system_score_gemma":0.004894416,"threshold_uncertainty_score":0.019535184},"labels":[],"label_agreement":null},{"id":"W4409558034","doi":"10.1038/s41525-025-00489-1","title":"Variants in CFAP410 cause a range of retinal and skeletal phenotypes","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Retinal Development and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Eye Institute; University of California, San Francisco; National Institutes of Health; Research to Prevent Blindness","keywords":"Phenotype; Retinal; Range (aeronautics); Biology; Medicine; Genetics; Ophthalmology; Gene; Engineering","score_opus":0.007438773937304566,"score_gpt":0.25198507967464995,"score_spread":0.24454630573734537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409558034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988859,0.000181216,0.00017007442,0.000015657137,0.000001942531,0.0000056394783,0.00014282651,0.0000055948976,0.000591052],"genre_scores_gemma":[0.9994936,0.00009528032,0.00010829954,0.000016747024,0.0000025616107,0.0000022821798,0.00012432516,0.0000033364965,0.00015367284],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99972934,0.00003008905,0.000030497635,0.000094253584,0.0000705036,0.000045247092],"domain_scores_gemma":[0.99960345,0.000104674036,0.00014054516,0.00003583185,0.000040930005,0.000074671305],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021792807,0.00041424425,0.00025937875,0.0011247982,0.00077507336,0.00035722513,0.00020897432,0.00035794184,0.0022743326],"category_scores_gemma":[0.0009324588,0.0002251442,0.00025314672,0.00083916885,0.00047041907,0.00024189058,0.00047610473,0.00020242877,0.0003253958],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016082762,0.000018579882,0.96728545,0.000020749685,0.000051330993,0.016387912,0.00034943857,0.00012351501,0.00875884,0.00011945495,0.00019209266,0.006531892],"study_design_scores_gemma":[0.000013008448,0.00017245817,0.88492227,0.000016574757,0.000053169482,0.111005865,0.00044022422,0.00020715041,0.0019959873,0.00009517825,0.0010638898,0.000014316268],"about_ca_topic_score_codex":0.0027658197,"about_ca_topic_score_gemma":0.0026084424,"teacher_disagreement_score":0.0027658197,"about_ca_system_score_codex":0.00018206499,"about_ca_system_score_gemma":0.00017057537,"threshold_uncertainty_score":0.0076084137},"labels":[],"label_agreement":null},{"id":"W4410348902","doi":"10.1038/s41525-025-00476-6","title":"Myelodysplastic syndrome diagnosed by genetic testing for hereditary cancer: a case report","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Acute Myeloid Leukemia Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Ontario Institute for Cancer Research; University Health Network; University of Toronto; Sinai Health System; Princess Margaret Cancer Centre","funders":"Princess Margaret Cancer Foundation","keywords":"Genetic testing; Medicine; Myelodysplastic syndromes; Cancer; Genetics; Oncology; Pediatrics; Internal medicine; Biology","score_opus":0.02786309364257899,"score_gpt":0.3280978876547437,"score_spread":0.3002347940121647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410348902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96926516,0.0076256883,0.005226472,0.0046389434,0.00056825194,0.000345494,0.00037356073,0.00031933366,0.011637149],"genre_scores_gemma":[0.99118173,0.002523108,0.0028361427,0.0010077913,0.0011179319,0.000049533817,0.00014010303,0.000035348137,0.0011083655],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9989786,0.00012391,0.0001299714,0.0002587133,0.00018561841,0.00032314964],"domain_scores_gemma":[0.99777156,0.0006838004,0.00043285178,0.00016437827,0.00012507672,0.0008222341],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053619564,0.003133489,0.001399695,0.0048892694,0.003840281,0.0026314787,0.0014790003,0.006447867,0.002361927],"category_scores_gemma":[0.0037388804,0.0018914696,0.0015384875,0.002055694,0.0025945492,0.0024135767,0.0028057178,0.0041524502,0.0010522316],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010474878,0.00003402286,0.0028996358,0.000013651997,0.0000066350253,0.9956903,0.00013100375,0.000032833184,0.00029883513,0.00010346876,0.00018235727,0.00059684174],"study_design_scores_gemma":[0.000005436352,0.000019533154,0.0012462401,0.0000094056695,0.000008496366,0.9981382,0.00006634021,0.000092493145,0.00014573768,0.00006315605,0.00019865457,0.000006245065],"about_ca_topic_score_codex":0.0038420437,"about_ca_topic_score_gemma":0.0037591958,"teacher_disagreement_score":0.006447867,"about_ca_system_score_codex":0.0017033314,"about_ca_system_score_gemma":0.0012098505,"threshold_uncertainty_score":0.012358606},"labels":[],"label_agreement":null},{"id":"W4410396303","doi":"10.1038/s41525-025-00494-4","title":"Novel germline and somatic variants in familial and sporadic meningioma genes","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Meningioma and schwannoma management","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; McGill University; McGill University Health Centre; Montreal Neurological Institute and Hospital","funders":"National Institute of Neurological Disorders and Stroke; Canadian Institutes of Health Research","keywords":"Germline; Somatic cell; Genetics; Gene; Germline mutation; Meningioma; Biology; Mutation; Medicine; Pathology","score_opus":0.02050864751455943,"score_gpt":0.27418706693318295,"score_spread":0.2536784194186235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410396303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99861395,0.00029712846,0.00027289634,0.000036554484,0.00000440108,0.0000038528397,0.00009630915,0.0000103346365,0.0006646222],"genre_scores_gemma":[0.99957126,0.000069940936,0.00019591679,0.000010070703,0.000005882788,0.000001124844,0.000057022648,0.000002280075,0.00008650879],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99977785,0.00002120191,0.000026871108,0.00006469168,0.000075658,0.000033805383],"domain_scores_gemma":[0.99970067,0.000108438035,0.00010357982,0.000020053723,0.000027589967,0.000039713643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020410698,0.00022243735,0.0001573165,0.00088377733,0.00032161432,0.0003227594,0.00015283872,0.00028109853,0.001512409],"category_scores_gemma":[0.000987895,0.000087358676,0.00018936374,0.0006063785,0.00034104378,0.00011245082,0.000261755,0.00015334583,0.0000998463],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049359316,0.000088127665,0.82419854,0.00007918773,0.00023519657,0.05822516,0.001136735,0.0008192258,0.08487644,0.0014884407,0.00053050736,0.027828833],"study_design_scores_gemma":[0.000055340217,0.00022525656,0.82095224,0.000042458712,0.00023127932,0.15691178,0.0006560915,0.0015237005,0.014417279,0.0016146175,0.0033434143,0.000026527496],"about_ca_topic_score_codex":0.00151486,"about_ca_topic_score_gemma":0.0026139102,"teacher_disagreement_score":0.00151486,"about_ca_system_score_codex":0.00026060626,"about_ca_system_score_gemma":0.00019156202,"threshold_uncertainty_score":0.0050594807},"labels":[],"label_agreement":null},{"id":"W4411977913","doi":"10.1038/s41525-025-00505-4","title":"Assessing the diagnostic impact of blood transcriptome profiling in a pediatric cohort previously assessed by genome sequencing","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Wilson Centre; SickKids Foundation; University Health Network; University of Toronto; Hospital for Sick Children; Vector Institute","funders":"Hospital for Sick Children; Genome Canada","keywords":"Transcriptome; Whole genome sequencing; Profiling (computer programming); DNA sequencing; Genome; Computational biology; Cohort; Gene expression profiling; Medicine; Biology; Bioinformatics; Genetics; Gene; Internal medicine; Computer science; Gene expression","score_opus":0.010036218022012794,"score_gpt":0.2979838673752993,"score_spread":0.28794764935328654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411977913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973016,0.00020654437,0.0012640123,0.000085178675,0.000008158384,0.000010586831,0.00048411798,0.000028802648,0.0006109121],"genre_scores_gemma":[0.99716836,0.00016811566,0.0016979768,0.00009430155,0.000016658027,0.000013647068,0.0006800268,0.000026568121,0.00013435779],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99896157,0.00028949522,0.000055074837,0.0003420764,0.00022202593,0.00012988222],"domain_scores_gemma":[0.9977773,0.0010963999,0.00042353448,0.00022015008,0.00024934593,0.00023323951],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013249946,0.00038586714,0.0002989461,0.0008479099,0.0005589531,0.0009803295,0.0002781964,0.00037797808,0.0008575509],"category_scores_gemma":[0.005392569,0.0001942826,0.00020910068,0.0005212243,0.00042434264,0.00028571318,0.0005748697,0.00058302673,0.0002471393],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018229551,0.000026052317,0.9784153,0.000015961894,0.000047236823,0.0011201598,0.00031238925,0.00026649804,0.011701757,0.00010786673,0.00033411317,0.007470399],"study_design_scores_gemma":[0.000012298228,0.00024175552,0.98629874,0.000023894207,0.00008990265,0.004141948,0.00056239526,0.0020161874,0.0048120734,0.00022660357,0.0015622344,0.000011947701],"about_ca_topic_score_codex":0.0035346986,"about_ca_topic_score_gemma":0.0039084326,"teacher_disagreement_score":0.0035346986,"about_ca_system_score_codex":0.00031881128,"about_ca_system_score_gemma":0.00046752297,"threshold_uncertainty_score":0.0070282817},"labels":[],"label_agreement":null},{"id":"W4413108345","doi":"10.1038/s41525-025-00518-z","title":"Rapid generation of a sdhb loss-of-function zebrafish model for secreting pheochromocytomas and paragangliomas","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Adrenal and Paraganglionic Tumors","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; Institut national de la recherche scientifique; Armand-Frappier Foundation; Cancer Research Society","keywords":"SDHB; Zebrafish; Paraganglioma; Biology; Pheochromocytoma; In vivo; Genetic model; Internal medicine; Cancer research; Endocrinology; Gene; Genetics; Medicine; Pathology; Germline mutation; Mutation","score_opus":0.04692651604237169,"score_gpt":0.29365964426156976,"score_spread":0.24673312821919807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413108345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91667116,0.0013802598,0.062498417,0.0010730213,0.00039642377,0.00091021025,0.0082953125,0.0012127963,0.007562395],"genre_scores_gemma":[0.9135429,0.0018086974,0.04506384,0.0003938419,0.000037963844,0.0013045792,0.004364208,0.00045861187,0.033025306],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996107,0.00002648396,0.00004343309,0.00008922589,0.00016553265,0.00006470666],"domain_scores_gemma":[0.99967635,0.0000473441,0.00008003978,0.000034996316,0.000050470444,0.000110664616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047198488,0.0005332934,0.00042368576,0.000747093,0.00049838267,0.0004430687,0.0005647487,0.0010172209,0.003997847],"category_scores_gemma":[0.00031112827,0.0003982818,0.0005694928,0.00020719327,0.0005865898,0.00042258462,0.0005860519,0.0017308837,0.0009295939],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010575779,0.00003718446,0.00027852465,0.00006223439,0.000010235152,0.00026979143,0.00005773359,0.00017295258,0.99639004,0.0006496937,0.00021054142,0.0017552833],"study_design_scores_gemma":[0.0001369459,0.0007418803,0.00684303,0.00007100461,0.00009235619,0.0011083378,0.00017106424,0.004014851,0.9683935,0.0004986818,0.01787614,0.00005225191],"about_ca_topic_score_codex":0.003345806,"about_ca_topic_score_gemma":0.007896148,"teacher_disagreement_score":0.003997847,"about_ca_system_score_codex":0.0007388565,"about_ca_system_score_gemma":0.00077158475,"threshold_uncertainty_score":0.01337409},"labels":[],"label_agreement":null},{"id":"W4414594472","doi":"10.1038/s41525-025-00523-2","title":"Biallelic variants in BBOX1 cause L-Carnitine deficiency and elevated γ-butyrobetaine","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Metabolism and Genetic Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Children's Hospital; Alberta Children's Hospital; Children's & Women's Health Centre of British Columbia; University of Victoria; University of Calgary","funders":"International Microbiome Centre, University of Calgary; Provincial Health Services Authority; Alberta Children's Hospital Foundation; Canterbury Medical Research Foundation; Genome British Columbia; BC Children's Hospital; Children's Hospital Foundation; Canadian Institutes of Health Research; Genome Canada","keywords":"Phenotype; Allele; Gene; Mutation; Caenorhabditis elegans; Knockout mouse; Heterozygote advantage","score_opus":0.009527868898779211,"score_gpt":0.2592309288363391,"score_spread":0.24970305993755987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414594472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997358,0.00041931347,0.0010223755,0.000088002256,0.000027308455,0.000025635773,0.0004549604,0.00006674764,0.0005375341],"genre_scores_gemma":[0.9973572,0.00030327315,0.0010083045,0.000063561616,0.000012288255,0.0000183583,0.00033447682,0.000047496076,0.0008550851],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99970204,0.000026539172,0.000038649345,0.0001018734,0.000079382,0.000051584455],"domain_scores_gemma":[0.9997055,0.000033412114,0.000114019334,0.0000135404725,0.000017286995,0.000116140276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013602206,0.001623191,0.00038804504,0.0008233473,0.00051651325,0.00026530566,0.0003839579,0.0007147156,0.00197418],"category_scores_gemma":[0.000283482,0.00028002722,0.00032526837,0.00041489946,0.00056687783,0.00012790448,0.0007789929,0.0006448412,0.00029100804],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047850827,0.00006179986,0.0062589967,0.000066642875,0.00006531382,0.0061344258,0.00009776438,0.000108006105,0.9846513,0.00013278745,0.0001261174,0.0018182577],"study_design_scores_gemma":[0.00028975337,0.0011731795,0.35388607,0.00011164412,0.0006224313,0.11872953,0.00065973034,0.0034520933,0.51336396,0.0006295924,0.006953869,0.00012813251],"about_ca_topic_score_codex":0.0020517607,"about_ca_topic_score_gemma":0.0035924108,"teacher_disagreement_score":0.0020517607,"about_ca_system_score_codex":0.00025505383,"about_ca_system_score_gemma":0.0002890834,"threshold_uncertainty_score":0.0066042542},"labels":[],"label_agreement":null},{"id":"W4414601267","doi":"10.1038/s41525-025-00515-2","title":"Genetic analyses across cardiovascular traits: leveraging genetic correlations to empower locus discovery and prediction in common cardiovascular diseases","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"Institute of Genetics; Canadian Institutes of Health Research; Takeda Canada; Institut de Cardiologie de Montréal; Fondation Institut de Cardiologie de Montréal; Université de Montréal","keywords":"Genome-wide association study; Genetic association; Genetic variation; Coronary artery disease; Locus (genetics); Disease; Genetic variability; Confidence interval","score_opus":0.017641832386485777,"score_gpt":0.29898699299630416,"score_spread":0.2813451606098184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414601267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96898144,0.002535149,0.023316776,0.0009512355,0.00004877467,0.000053967327,0.001315341,0.0002303558,0.0025669045],"genre_scores_gemma":[0.9853617,0.00066106144,0.012905306,0.00012360147,0.000058815735,0.00001640156,0.00045544168,0.000032554693,0.00038503186],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99768484,0.0011922511,0.00012180621,0.0005032388,0.0003539002,0.00014388624],"domain_scores_gemma":[0.9948555,0.0030109563,0.0009076745,0.0005665826,0.00036726688,0.00029204195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0051562586,0.000926942,0.0008622528,0.0031653591,0.0006942449,0.0013244792,0.00054385804,0.00042104034,0.0017861369],"category_scores_gemma":[0.009667267,0.00032963723,0.0012521066,0.003441373,0.0005789133,0.00043252468,0.0011061955,0.0010116132,0.00025743194],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033961583,0.00007902915,0.920936,0.00009921025,0.002961288,0.00045949165,0.00032794697,0.004265707,0.006870495,0.000819513,0.0006951134,0.06214655],"study_design_scores_gemma":[0.00006002984,0.00015954295,0.9790931,0.000041296484,0.001322194,0.00037258572,0.00018004393,0.013387132,0.0012067554,0.002714436,0.0014247965,0.000038103975],"about_ca_topic_score_codex":0.036147002,"about_ca_topic_score_gemma":0.08615319,"teacher_disagreement_score":0.036147002,"about_ca_system_score_codex":0.00049154426,"about_ca_system_score_gemma":0.0018038197,"threshold_uncertainty_score":0.07187319},"labels":[],"label_agreement":null},{"id":"W4416337926","doi":"10.1038/s41525-025-00534-z","title":"RareLink: scalable REDCap-based framework for rare disease interoperability linking international registries to FHIR and Phenopackets","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Alberta Children's Hospital; University of Calgary","funders":"National Human Genome Research Institute; Division of Research Capacity Development; Medical Research Council; Dalhousie University; Bundesministerium für Bildung und Forschung; South African Medical Research Council; Sugar Research and Development Corporation; Children's Hospital Foundation; Deutsche Forschungsgemeinschaft; Alberta Children's Hospital Foundation; Immunodeficiency Canada; Keio University; National Institutes of Health; Universiteit Stellenbosch","keywords":"Interoperability; Rare disease; Health information exchange; Data exchange; Disease registry; Health care; Scalability; Scope (computer science); Electronic data interchange","score_opus":0.01232150609859288,"score_gpt":0.2940947916360851,"score_spread":0.2817732855374922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416337926","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0043964395,0.0005370211,0.8163235,0.0017481691,0.00033917592,0.0014451405,0.028093636,0.13874146,0.008375377],"genre_scores_gemma":[0.07877052,0.0012404858,0.685133,0.0031808524,0.00029004138,0.0030014892,0.20037319,0.019667832,0.008342592],"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9917452,0.002145157,0.0015963726,0.0017389713,0.0021092384,0.0006651118],"domain_scores_gemma":[0.9873002,0.004404204,0.0010426252,0.004155671,0.0019300529,0.0011671293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.019681867,0.0016978096,0.0014381113,0.005608079,0.0017373246,0.0077646384,0.0051718582,0.0027630578,0.01061672],"category_scores_gemma":[0.027998745,0.0016089174,0.004639491,0.003713644,0.001656996,0.008156619,0.014037872,0.003525852,0.0071093687],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021117867,0.0007511225,0.021543363,0.0033784062,0.0012417397,0.0034508267,0.0037635115,0.057874065,0.01168571,0.2876476,0.38279954,0.22375229],"study_design_scores_gemma":[0.00048529165,0.00018604727,0.0063430434,0.0011866634,0.00027544884,0.0014275702,0.00074787985,0.16348441,0.01302526,0.14933997,0.66296226,0.0005362202],"about_ca_topic_score_codex":0.02264406,"about_ca_topic_score_gemma":0.01816234,"teacher_disagreement_score":0.02264406,"about_ca_system_score_codex":0.0031033915,"about_ca_system_score_gemma":0.007620979,"threshold_uncertainty_score":0.1040889},"labels":[],"label_agreement":null},{"id":"W4416413263","doi":"10.1038/s41525-025-00529-w","title":"Genome-wide association study of 398,238 women unveils seven loci associated with high-grade serous ovarian cancer","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University of British Columbia; Sinai Health System; Vancouver General Hospital; Lunenfeld-Tanenbaum Research Institute; Centre hospitalier universitaire de Québec; Princess Margaret Cancer Centre; BC Cancer Agency; University of Toronto","funders":"Medical Research and Materiel Command; Jonsson Comprehensive Cancer Center; National Center for Research Resources; National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences; NIH Office of the Director; National Human Genome Research Institute; National Institute of Mental Health; National Cancer Institute; European Regional Development Fund; Cancer Council Victoria; Cancer Center, University of Kansas; University of California, San Francisco; University of Texas MD Anderson Cancer Center; University of California, Los Angeles; National Institutes of Health; Unicancer; Kerry Group Kuok Foundation; Directorate for Biological Sciences; Hellenic Health Foundation; World Cancer Research Fund; BC Cancer Foundation; Freistaat Sachsen; Institut Català de la Salut; Centro de Investigación Biomédica en Red de Cáncer; Liga Portuguesa Contra o Cancro; Mutuelle Générale de l'Education Nationale; Hebei Medical University; Institut Gustave-Roussy; Ministero dello Sviluppo Economico; European Society for Medical Oncology; Common Fund; Uppsala Universitet; Clalit Health Services; Sigrid Juséliuksen Säätiö; National Health and Medical Research Council; Deutsche Krebshilfe; National Medical Research Council; Norges Forskningsråd; Pomorski Uniwersytet Medyczny W Szczecinie; Academic Center for Education, Culture and Research; Centre National de la Recherche Scientifique; Fox Chase Cancer Center; KWF Kankerbestrijding; National Council for Scientific Research; Maastricht Universitair Medisch Centrum; Merck Sharp and Dohme; Vetenskapsrådet; Helse Vest; National Institute on Drug Abuse; Odense Universitetshospital; Ligue Contre le Cancer; Linköpings Universitet; Cancer Association of South Africa; Hungarian Scientific Research Fund; Swedish Cancer Foundation; Ministry of Health, Labour and Welfare; Universität Wien; Cancerfonden; Terry Fox Foundation; Vrije Universiteit Amsterdam; Rijksuniversiteit Groningen; Ministero della Salute; Institut National de la Santé et de la Recherche Médicale; National Research Foundation Singapore; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Deutsche Forschungsgemeinschaft; American Cancer Society; Radboud Universiteit; Cancer Australia; Cancer Institute NSW; NIHR Cambridge Biomedical Research Centre; University College London; University of Toronto; Ministerio de Ciencia e Innovación; McGill University; Univerzita Karlova v Praze; Generalitat de Catalunya; Fondation ARC pour la Recherche sur le Cancer; Imperial College London; National Research Foundation; Jewish General Hospital; National Institute for Health and Care Research; NRG Oncology; University of Cambridge; Nemzeti Kutatási Fejlesztési és Innovációs Hivatal; Government of Canada; Genome Canada; GlaxoSmithKline; Fred C. and Katherine B. Andersen Foundation; Russian Science Foundation; Gray Foundation; Princeton Center for Complex Materials; Western Sydney Local Health District; PharmaMar; Associazione Italiana per la Ricerca sul Cancro; Amsterdam University Medical Centers; QIMR Berghofer Medical Research Institute; Fondation du cancer du sein du Québec; Génome Québec; Canadian Institutes of Health Research; Lietuvos Mokslo Taryba; European Commission; Cedars-Sinai Medical Center; Department of Health and Social Care; NorthShore University HealthSystem; Universitair Ziekenhuis Gent; Ovarian Cancer Australia; Faculty of Medicine, McGill University; Peter MacCallum Foundation; Helsingin ja Uudenmaan Sairaanhoitopiiri; Istituto Oncologico Veneto; Institut National Du Cancer; Kreftforeningen; Memorial Sloan-Kettering Cancer Center; Universität Innsbruck; Wellcome Trust; Ministry of Education, Culture, Sports, Science and Technology; Beckman Research Institute, City of Hope; Lon V. Smith Foundation; Rutgers Cancer Institute of New Jersey; Ministère du Développement Économique, de l’Innovation et de l’Exportation; Fundación Mutua Madrileña; National Heart, Lung, and Blood Institute; Universiteit Leiden; Ohio State University; Korea Health Industry Development Institute; Vanderbilt University; State of Connecticut Department of Public Health; University of Chicago; Israel Cancer Association; Dr. Ralph and Marian Falk Medical Research Trust; Vanderbilt-Ingram Cancer Center; Japan Agency for Medical Research and Development; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Breast Cancer Research Foundation; Dana-Farber Cancer Institute; Universiteit Gent; National Breast Cancer Foundation; Health Canada; Novocure; European Social Fund; Medical Research Council; Mayo Foundation for Medical Education and Research; University of Pennsylvania; Deutsches Krebsforschungszentrum; Cancer Research Society; Ministério da Ciência, Tecnologia e Inovação; Umeå Universitet; Moffitt Cancer Center; Minnesota Ovarian Cancer Alliance; Radboud Universitair Medisch Centrum; University of Pretoria; Cancer Research UK; NordForsk; U.S. Department of Defense; Leids Universitair Medisch Centrum; Oak Foundation; Peter MacCallum Cancer Centre; Fisher Center for Alzheimer's Research Foundation; Erasmus Medisch Centrum; Ministerio de Economía y Competitividad; National Center for Advancing Translational Sciences; Bundesministerium für Bildung und Forschung; Japan Society for the Promotion of Science; Ovarian Cancer Research Fund; Sahlgrenska Universitetssjukhuset; Royal Marsden NHS Foundation Trust; Instituto de Salud Carlos III; Lee Foundation; Oregon Health and Science University; Universiteit Maastricht; University of Pittsburgh; Všeobecná Fakultní Nemocnice v Praze; Kansas Bioscience Authority; Syöpäsäätiö; Fundação de Amparo à Pesquisa do Estado de São Paulo; AstraZeneca; Beth Israel Deaconess Medical Center; Susan G. Komen for the Cure; National Cancer Centre of Singapore; Georgetown University","keywords":"Ovarian cancer; Genome-wide association study; Odds ratio; Serous fluid; SNP; Biobank; Serous ovarian cancer","score_opus":0.009223503641967109,"score_gpt":0.26168287688683595,"score_spread":0.25245937324486883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416413263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99165815,0.0037964156,0.0011327283,0.00016626986,0.00003309515,0.000015650883,0.002452944,0.00003012451,0.0007145625],"genre_scores_gemma":[0.99811673,0.00028142685,0.0003430275,0.00003636317,0.000009909854,0.00000838674,0.0008400056,0.000008084686,0.00035613475],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998987,0.00035414964,0.00008836777,0.00031556838,0.00016003822,0.00009487994],"domain_scores_gemma":[0.99902403,0.00046156146,0.00020243946,0.00016573822,0.00007348707,0.00007277131],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017263194,0.00034087116,0.00054976525,0.0007190134,0.0005184717,0.0006929897,0.00034795547,0.00041128352,0.0024073094],"category_scores_gemma":[0.0024082782,0.00028895747,0.0014469802,0.0018061392,0.00023748058,0.00022094484,0.0005365967,0.00048648161,0.00021457835],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001864045,0.00003254679,0.9760265,0.00014551656,0.009280092,0.00036483406,0.00010421849,0.00045861735,0.0022739382,0.0001194414,0.00097004976,0.008360128],"study_design_scores_gemma":[0.00023703178,0.00023330534,0.9849609,0.00006222131,0.007515802,0.0006071371,0.00016938866,0.0015250598,0.00092393626,0.00035820168,0.0033928042,0.000014199289],"about_ca_topic_score_codex":0.006390869,"about_ca_topic_score_gemma":0.012537414,"teacher_disagreement_score":0.006390869,"about_ca_system_score_codex":0.00022938683,"about_ca_system_score_gemma":0.00024091305,"threshold_uncertainty_score":0.012707353},"labels":[],"label_agreement":null},{"id":"W4416793173","doi":"10.1038/s41525-025-00533-0","title":"A scoping review of stem cell models of leukodystrophies: advances in understanding pathophysiological mechanisms","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"RNA regulation and disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill Genome Centre; Montreal Children's Hospital; McGill University; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; National Institute of Child Health and Human Development; McGill University Health Centre; Canadian Institutes of Health Research; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Canada First Research Excellence Fund; McGill University","keywords":"Disease; Leukodystrophy; Stem cell; Identification (biology); Huntington's disease; Neural stem cell; Stem cell biology","score_opus":0.0314216576871867,"score_gpt":0.2946479494912009,"score_spread":0.2632262918040142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416793173","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017309932,0.9960834,0.0005287336,0.0012730417,0.00060873525,0.00010086247,0.00016278865,0.000016172273,0.0010532829],"genre_scores_gemma":[0.0010032671,0.99688774,0.0006614703,0.00062782166,0.00018020718,0.00014937036,0.00017872485,0.0000067589262,0.00030457287],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9964719,0.0009478726,0.0013847108,0.00026560796,0.00081455515,0.000115401956],"domain_scores_gemma":[0.9778447,0.016010037,0.0025098545,0.00044781435,0.002857818,0.00032981503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0074697626,0.0014617827,0.0034668797,0.013220558,0.0008360537,0.0032994638,0.0021400067,0.0025898668,0.0047506797],"category_scores_gemma":[0.027129572,0.00078940624,0.003635161,0.0117271915,0.001207808,0.0028391827,0.0019476579,0.002305441,0.0010791174],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012784828,0.000043733657,0.00036771584,0.5439697,0.0014101346,0.0004891645,0.0006259252,0.0006162073,0.0011412215,0.0066074855,0.038435172,0.40616566],"study_design_scores_gemma":[0.000022919892,0.000081900536,0.0006880884,0.5930042,0.0029833876,0.0005497263,0.0002662706,0.00014715562,0.00040978767,0.0033455705,0.3984641,0.000036835496],"about_ca_topic_score_codex":0.005225732,"about_ca_topic_score_gemma":0.009642601,"teacher_disagreement_score":0.013220558,"about_ca_system_score_codex":0.0030035505,"about_ca_system_score_gemma":0.012706301,"threshold_uncertainty_score":0.03950435},"labels":[],"label_agreement":null},{"id":"W4416822075","doi":"10.1038/s41525-025-00536-x","title":"UBR5 loss-of-function variants in autism spectrum disorder and intellectual disability: case series and review of the literature","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"University of Toronto; Hospital for Sick Children; Autism Speaks","keywords":"Haploinsufficiency; Autism spectrum disorder; Intellectual disability; Autism; Proband; Neurodevelopmental disorder; Developmental disorder; Global developmental delay; Cohort","score_opus":0.008032894136325899,"score_gpt":0.24469599595175998,"score_spread":0.23666310181543407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416822075","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025192833,0.9686876,0.001101811,0.0007952855,0.00041391424,0.00003944472,0.00019841819,0.000059049722,0.0035116053],"genre_scores_gemma":[0.10421663,0.89016396,0.001658519,0.0009312272,0.0015446689,0.000030750773,0.00030193018,0.0000232311,0.0011290417],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99959654,0.00003344887,0.00016957182,0.00009020237,0.00007284358,0.000037502527],"domain_scores_gemma":[0.9991862,0.00036859993,0.00025136647,0.000036326084,0.00008025424,0.0000772864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000394664,0.0008088567,0.0010839367,0.005665445,0.0004085104,0.0009768319,0.0010577429,0.0012628604,0.0017607221],"category_scores_gemma":[0.001323824,0.00034605677,0.0005449501,0.0042573335,0.0008027373,0.0011881934,0.00059145095,0.0006396921,0.0008509041],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019844795,0.00015150917,0.02554332,0.01960121,0.0005760833,0.51697975,0.0010047373,0.00065324246,0.005983159,0.0010227762,0.017119758,0.41116604],"study_design_scores_gemma":[0.000013502705,0.000061355095,0.016789107,0.0035234077,0.00063604926,0.9282785,0.0005196221,0.00017955288,0.00080540805,0.0006105828,0.048527814,0.00005506385],"about_ca_topic_score_codex":0.0009980301,"about_ca_topic_score_gemma":0.0016198524,"teacher_disagreement_score":0.005665445,"about_ca_system_score_codex":0.00041747192,"about_ca_system_score_gemma":0.00065070705,"threshold_uncertainty_score":0.0058901906},"labels":[],"label_agreement":null},{"id":"W4416987111","doi":"10.1038/s41525-025-00537-w","title":"Quantum computing and the implementation of precision medicine","year":2025,"lang":"en","type":"article","venue":"npj Genomic Medicine","topic":"Quantum Computing Algorithms and Architecture","field":"Computer Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome Canada; SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"","keywords":"Biomedicine; Precision medicine; Quantum computer; Quantum; Quantum algorithm; Workflow; Quantum technology; Qubit; Personalized medicine","score_opus":0.010292835131345528,"score_gpt":0.30111581565762535,"score_spread":0.2908229805262798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416987111","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.027563093,0.03801829,0.7268567,0.03531598,0.0028456054,0.00018151384,0.0003083823,0.0013663496,0.16754413],"genre_scores_gemma":[0.8080535,0.022364624,0.15191528,0.0036926945,0.0010990358,0.00042508505,0.00021754488,0.00030171173,0.0119304955],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9980659,0.00081592664,0.00009162417,0.0002531468,0.0005431859,0.00023025222],"domain_scores_gemma":[0.9973707,0.0015255112,0.0001338139,0.00050785043,0.00034896279,0.00011315601],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030063905,0.0005678981,0.0010043947,0.0007817947,0.0013509644,0.0033212516,0.0016296618,0.002885539,0.0062228437],"category_scores_gemma":[0.007354332,0.0005069485,0.0008373967,0.00070234877,0.0074837217,0.004943248,0.0034257793,0.0040937075,0.000874269],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019381934,0.000011400834,0.000098971585,0.00013142776,0.00001975102,0.000038544,0.000088420486,0.012968431,0.00064867886,0.9736622,0.0014655438,0.0108473115],"study_design_scores_gemma":[0.000022067452,0.000040214596,0.0001332622,0.0001218171,0.000012838313,0.000041188443,0.000049594837,0.035468664,0.00097018626,0.93681073,0.026303317,0.000026105],"about_ca_topic_score_codex":0.0024440761,"about_ca_topic_score_gemma":0.0010641969,"teacher_disagreement_score":0.0062228437,"about_ca_system_score_codex":0.002827091,"about_ca_system_score_gemma":0.0025683236,"threshold_uncertainty_score":0.020817459},"labels":[],"label_agreement":null}]}