{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":1715,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":1715,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"15a47f3b55a7","filters":{"topic":"Aquaculture disease management and microbiota"}},"results":[{"id":"W1991024712","doi":"10.1038/nature10342","title":"The genome sequence of Atlantic cod reveals a unique immune system","year":2011,"lang":"en","type":"article","venue":"Nature","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":850,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Center for Information Technology; Genome Atlantic; Norges Miljø- og Biovitenskapelige Universitet; Norwegian Sequencing Centre; Norges Forskningsråd; Universitetet i Oslo; Wellcome Trust","keywords":"Gadus; Biology; Atlantic cod; Major histocompatibility complex; Acquired immune system; Immune system; Genome; Gene; Genetics; Evolutionary biology; Whole genome sequencing; Fishery; Fish <Actinopterygii>","authors":[{"name":"Bastiaan Star","is_ca":false},{"name":"Alexander J. Nederbragt","is_ca":false},{"name":"Sissel Jentoft","is_ca":false},{"name":"Unni Grimholt","is_ca":false},{"name":"Martin Malmstrøm","is_ca":false},{"name":"Tone F. Gregers","is_ca":false},{"name":"Trine B. Rounge","is_ca":false},{"name":"Jonas Paulsen","is_ca":false},{"name":"Monica Hongrø Solbakken","is_ca":false},{"name":"Animesh Sharma","is_ca":false},{"name":"Ola Frang Wetten","is_ca":false},{"name":"Anders Lanzén","is_ca":false},{"name":"Roger Winer","is_ca":false},{"name":"James Knight","is_ca":false},{"name":"Jan-Hinnerk Vogel","is_ca":false},{"name":"Bronwen Aken","is_ca":false},{"name":"Øivind Andersen","is_ca":false},{"name":"Karin Lagesen","is_ca":false},{"name":"Ave Tooming‐Klunderud","is_ca":false},{"name":"Rolf B. Edvardsen","is_ca":false},{"name":"Kirubakaran G. Tina","is_ca":false},{"name":"Chirag Nepal","is_ca":false},{"name":"Christopher Previti","is_ca":false},{"name":"Bård Ove Karlsen","is_ca":false},{"name":"Truls Moum","is_ca":false},{"name":"Morten Skage","is_ca":false},{"name":"Paul R. Berg","is_ca":false},{"name":"Tor Gjøen","is_ca":false},{"name":"Heiner Kuhl","is_ca":false},{"name":"Jim Thorsen","is_ca":false},{"name":"Ketil Malde","is_ca":false},{"name":"Richard Reinhardt","is_ca":false},{"name":"Lei Du","is_ca":false},{"name":"Steinar Johansen","is_ca":false},{"name":"Steve Searle","is_ca":false},{"name":"Sigbjørn Lien","is_ca":false},{"name":"Frank Nilsen","is_ca":false},{"name":"Inge Jonassen","is_ca":false},{"name":"Stig W. Omholt","is_ca":false},{"name":"Nils Chr. Stenseth","is_ca":false},{"name":"Kjetill S. Jakobsen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01218457658776866,"gpt":0.2226072522510433,"spread":0.2104226756632746,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002554392,0.000135102,0.0002021629,0.0000379419,0.0001728714,0.000007557061,0.0004555511,0.0007510157,0.00009544169],"category_scores_gemma":[0.00003196437,0.00008211184,0.000107098,0.0001345826,0.0001765049,0.00003832581,0.0001074513,0.0008265687,0.0002459761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002874807,"about_ca_system_score_gemma":0.00002511892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005785178,"about_ca_topic_score_gemma":0.00001141112,"domain_scores_codex":[0.9991913,0.0001322266,0.0002328409,0.0001780706,0.00002629117,0.0002392665],"domain_scores_gemma":[0.9993114,0.00003952988,0.0001626869,0.0003759097,0.00009768319,0.00001277084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001243262,0.00003712739,0.0005084845,0.0001061173,0.000254307,0.00001347085,0.0004720043,9.713646e-8,0.9278113,0.06499124,0.005566207,0.0001152961],"study_design_scores_gemma":[0.002727419,0.0003273716,0.05344311,0.000593179,0.0006940922,0.0003007573,0.004363928,0.000001694175,0.2280866,0.001068167,0.7074856,0.0009080884],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8341051,0.1181561,0.0001024172,0.0006348403,0.003107955,0.001848808,0.0004002283,0.0003745876,0.04126992],"genre_scores_gemma":[0.9914493,0.0001407104,0.0000382974,0.00009540421,0.00001631323,0.00001150603,0.0002243026,0.00001069893,0.00801348],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7019194,"threshold_uncertainty_score":0.5792521,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999371063","doi":"10.3389/fmicb.2014.00207","title":"Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries","year":2014,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":750,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Microbiome; Biology; Aquaculture; Zebrafish; Metagenomics; Vertebrate; Evolutionary biology; Computational biology; Fish <Actinopterygii>; Ecology; Biotechnology; Fishery; Bioinformatics; Genetics; Gene","authors":[{"name":"Martin Llewellyn","is_ca":true},{"name":"Sébastien Boutin","is_ca":true},{"name":"Seyed Hossein Hoseinifar","is_ca":false},{"name":"Nicolas Derôme","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009207969989179842,"gpt":0.2181742236582515,"spread":0.2089662536690717,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004599614,0.0004953445,0.00145935,0.0003133724,0.00008712144,0.00002357209,0.000492872,0.0005784699,0.0000206946],"category_scores_gemma":[0.0000459089,0.0002750107,0.0001512032,0.0004992085,0.0007998814,0.00007955593,0.0002997571,0.0006379847,0.000008819041],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008447288,"about_ca_system_score_gemma":0.0000605208,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000323212,"about_ca_topic_score_gemma":0.0007735248,"domain_scores_codex":[0.9972678,0.0007739846,0.0009427028,0.0005810144,0.00001404653,0.0004204294],"domain_scores_gemma":[0.998841,0.00008189819,0.0006237311,0.0004103334,0.00003036632,0.0000126337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003734182,0.0005152292,0.1326021,0.01604645,0.001464448,0.00003006359,0.009062405,0.000003142945,0.1407027,0.0002821868,0.0741355,0.6247824],"study_design_scores_gemma":[0.0006692098,0.00002520737,0.007612924,0.001719597,0.0001088982,0.00007286181,0.0002158595,7.831738e-7,0.0001468862,0.00008427398,0.9890227,0.0003207411],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02786177,0.9688382,0.00004420577,0.0002449819,0.0008327586,0.001633991,0.00048657,0.00001327342,0.00004430092],"genre_scores_gemma":[0.003228843,0.9910128,0.00005516629,0.0002483216,0.00002510123,0.00008658801,0.003257246,0.00003989182,0.002046111],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9148872,"threshold_uncertainty_score":0.9999702,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2009651579","doi":"10.1016/j.fsi.2007.06.005","title":"The innate immune response of finfish – A review of current knowledge","year":2007,"lang":"en","type":"review","venue":"Fish & Shellfish Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":629,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Biology; Innate immune system; Aquaculture; Diversification (marketing strategy); Animal husbandry; Acquired immune system; Immune system; Fishery; Ecology; Fish <Actinopterygii>; Agriculture; Immunology; Business","authors":[{"name":"Shona K. Whyte","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04015586262833889,"gpt":0.3422401861020012,"spread":0.3020843234736624,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003162935,0.0009429158,0.003741177,0.0004993308,0.0002864289,0.00001815978,0.002308172,0.001046302,0.0006975004],"category_scores_gemma":[0.001210986,0.0006563544,0.001818897,0.001062252,0.00153532,0.00006212069,0.001229736,0.001419347,0.0007195203],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001334284,"about_ca_system_score_gemma":0.0007154435,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001382816,"about_ca_topic_score_gemma":0.00001167697,"domain_scores_codex":[0.9925822,0.002518102,0.003021458,0.0007865852,0.00009788274,0.0009937874],"domain_scores_gemma":[0.9934418,0.001564554,0.002460132,0.001926529,0.00056752,0.00003951767],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000530733,0.0004096214,0.00000183941,0.05851913,0.002453525,0.000008077215,0.00009732872,1.240524e-8,0.0006377721,0.0005349695,0.1699342,0.7668728],"study_design_scores_gemma":[0.0007166671,0.0002401591,0.00006765989,0.07036123,0.001898587,0.00008820413,0.00004097355,1.539575e-8,0.0003511806,0.00001113384,0.9257007,0.0005235411],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00003954285,0.9919425,0.000009214857,0.0001281508,0.003092104,0.002049521,0.0005587755,0.00006881026,0.002111351],"genre_scores_gemma":[0.00001491202,0.9896343,0.000007162192,0.000127059,0.00006105507,0.0001637635,0.001864365,0.00009582803,0.008031502],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7663493,"threshold_uncertainty_score":0.9995888,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2912260766","doi":"10.3389/fendo.2019.00009","title":"Gut Microbiota and Energy Homeostasis in Fish","year":2019,"lang":"en","type":"review","venue":"Frontiers in Endocrinology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":614,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Gut–brain axis; Gut flora; Biology; Immune system; Energy homeostasis; Homeostasis; Hormone; Fish <Actinopterygii>; Energy metabolism; Neuroscience; Cell biology; Immunology; Endocrinology","authors":[{"name":"Robyn Lisa Butt","is_ca":true},{"name":"Hélène Volkoff","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01920721444406352,"gpt":0.2607814425922518,"spread":0.2415742281481883,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001087765,0.0007302169,0.002682839,0.001371742,0.00005871242,0.00002516255,0.000661667,0.000995197,0.0001635077],"category_scores_gemma":[0.00003594704,0.0006659646,0.0003330553,0.0004753931,0.0003262691,0.00008387856,0.0005739129,0.0008713895,0.0002233233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002287667,"about_ca_system_score_gemma":0.0001241938,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001367158,"about_ca_topic_score_gemma":0.0002630344,"domain_scores_codex":[0.9964203,0.0005266403,0.0008358842,0.00107624,0.0000266113,0.00111437],"domain_scores_gemma":[0.9989553,0.00008020364,0.0003044363,0.0006068706,0.00002079683,0.00003240763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003781257,0.0001224339,0.0003322274,0.002835243,0.0005015594,0.0001452545,0.00006375572,1.84854e-7,0.00004425279,0.0006899931,0.1377038,0.8575234],"study_design_scores_gemma":[0.001332635,0.00005134564,0.0001841452,0.00152388,0.0004692599,0.0001767136,0.0001846391,1.866322e-7,0.000006068609,0.00005659181,0.995386,0.0006285009],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00005031273,0.9941078,0.00003086816,0.0001107627,0.003209943,0.0005256677,0.0002765395,0.00005587075,0.001632226],"genre_scores_gemma":[0.00008667987,0.9857103,0.0001362559,0.0002858234,0.00003888353,0.0001217792,0.001583868,0.00006888145,0.01196749],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8576822,"threshold_uncertainty_score":0.9995791,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2094906431","doi":"10.1016/s0145-305x(01)00040-4","title":"Ecotoxicology and innate immunity in fish","year":2001,"lang":"en","type":"review","venue":"Developmental & Comparative Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":470,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; Vancouver Island University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Innate immune system; Biology; Toxicant; Fish <Actinopterygii>; Immunity; Microcosm; Immunology; Zoology; Toxicology; Immune system; Ecology; Toxicity; Fishery; Medicine; Internal medicine","authors":[{"name":"Niels C. Bols","is_ca":true},{"name":"John L. Brubacher","is_ca":true},{"name":"Rosemarie Ganassin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06045961825479067,"gpt":0.3262588518761687,"spread":0.265799233621378,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002971348,0.000953472,0.002949696,0.0007659703,0.0002911929,0.00003981107,0.0007359603,0.001113617,0.001232577],"category_scores_gemma":[0.00003507085,0.0008425795,0.0003268548,0.0007087738,0.0009118094,0.0001476515,0.001051289,0.001472874,0.001775555],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004449915,"about_ca_system_score_gemma":0.0003025248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000909756,"about_ca_topic_score_gemma":0.0006704147,"domain_scores_codex":[0.9958667,0.001140039,0.001140931,0.000912605,0.0000370157,0.0009027424],"domain_scores_gemma":[0.9987936,0.0002786632,0.0004853769,0.0003531369,0.00005018689,0.00003905793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003466021,0.001221872,0.000584741,0.002906291,0.007445787,0.0003294594,0.003561179,2.427425e-7,0.001443857,0.002324707,0.02453812,0.9552972],"study_design_scores_gemma":[0.001407581,0.0001161087,0.00132449,0.001447655,0.0003163215,0.0006258195,0.0008132617,8.23456e-8,0.00008639705,0.00004500098,0.9929793,0.0008379385],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004667075,0.9857879,0.000004062822,0.00004099215,0.0007480464,0.001473025,0.0001400495,0.00009857382,0.007040326],"genre_scores_gemma":[0.001304329,0.9902139,0.00007917989,0.000196379,0.00001962656,0.0003510107,0.0030627,0.00004836215,0.004724461],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9684412,"threshold_uncertainty_score":0.9996805,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974073103","doi":"10.3354/dao041043","title":"Changes in hydrolytic enzyme activities of naïve Atlantic salmon Salmo salar skin mucus due to infection with the salmon louse Lepeophtheirus salmonis and cortisol implantation","year":2000,"lang":"en","type":"article","venue":"Diseases of Aquatic Organisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":452,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Marine Biosciences","funders":"","keywords":"Lepeophtheirus; Mucus; Salmo; Biology; Alkaline phosphatase; Protease; Microbiology; Lysozyme; Proteases; Enzyme; Fish <Actinopterygii>; Biochemistry; Fishery; Ecology","authors":[{"name":"NW Ross","is_ca":true},{"name":"K. J. Firth","is_ca":false},{"name":"Anbang Wang","is_ca":false},{"name":"JF Burka","is_ca":false},{"name":"SC Johnson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004702848597860089,"gpt":0.2041994682026508,"spread":0.1994966196047907,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001230384,0.0003032026,0.0004873404,0.0002077328,0.0001237164,0.00002700964,0.0001853188,0.0001266376,0.0005648728],"category_scores_gemma":[0.00003352833,0.0002158657,0.00007253139,0.0003432846,0.0002667452,0.000136305,0.00006341976,0.0001326912,0.00007272704],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004292661,"about_ca_system_score_gemma":0.00005377628,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001667618,"about_ca_topic_score_gemma":0.002060526,"domain_scores_codex":[0.9986558,0.0002055556,0.0003401695,0.0003594139,0.00009921916,0.0003398567],"domain_scores_gemma":[0.9991915,0.0001803598,0.0002233292,0.0003200056,0.00003320082,0.00005167092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003710516,0.001549159,0.1138788,0.0007063746,0.00102664,0.0001104117,0.01063819,0.0002129536,0.8365063,0.0003571169,0.001361341,0.02994218],"study_design_scores_gemma":[0.003756373,0.002032309,0.668072,0.0004235097,0.001034343,0.0001772445,0.002978021,0.00004805309,0.3200161,0.0001801712,0.0005365036,0.0007454213],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973691,0.001063381,0.00007325155,0.0003194856,0.00006920159,0.0008501858,0.000106382,0.00004673115,0.0001023576],"genre_scores_gemma":[0.9988974,0.0002904911,0.00002495452,0.0001397678,0.00002200732,0.00004455384,0.0002136472,0.00003709021,0.0003300324],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5541931,"threshold_uncertainty_score":0.8802747,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097072668","doi":"10.1641/0006-3568(2005)055[0427:fsatro]2.0.co;2","title":"Fugitive Salmon: Assessing the Risks of Escaped Fish from Net-Pen Aquaculture","year":2005,"lang":"en","type":"article","venue":"BioScience","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":422,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria; Memorial University of Newfoundland","funders":"","keywords":"Aquaculture; Fishery; Agriculture; Fish farming; Range (aeronautics); Competition (biology); Fish <Actinopterygii>; Biology; Ecology","authors":[{"name":"Rosamond L. Naylor","is_ca":false},{"name":"Kjetil Hindar","is_ca":false},{"name":"Ian Fleming","is_ca":true},{"name":"Rebecca J. Goldburg","is_ca":false},{"name":"Susan L. Williams","is_ca":false},{"name":"John P. Volpe","is_ca":true},{"name":"Frederick G. Whoriskey","is_ca":false},{"name":"Josh Eagle","is_ca":false},{"name":"DENNIS KELSO","is_ca":false},{"name":"Marc Mangel","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0329398952316024,"gpt":0.3040335117351577,"spread":0.2710936165035553,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001938781,0.0001604164,0.0001790948,0.00003787122,0.0003074603,0.00006193624,0.0006126252,0.0001315239,0.0005844959],"category_scores_gemma":[0.00006948665,0.00009772171,0.0000967735,0.0002553178,0.0005500843,0.000259546,0.0001862162,0.000178756,0.0002777434],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002498477,"about_ca_system_score_gemma":0.00004294628,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002082896,"about_ca_topic_score_gemma":0.00008433674,"domain_scores_codex":[0.9989728,0.0001161186,0.0002160041,0.000344076,0.00005747913,0.0002935202],"domain_scores_gemma":[0.9993519,0.00008194477,0.0001727013,0.000307,0.00006462319,0.0000218969],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002134637,0.0001135668,0.002358645,0.00000502477,0.00006668072,0.000002017927,0.001087273,0.000006122442,0.9441304,0.0004713086,0.0389827,0.01275497],"study_design_scores_gemma":[0.001002011,0.00006290675,0.1905475,0.00007553363,0.0001640804,0.000008306177,0.003425845,0.00003519795,0.275879,0.0001053794,0.5283149,0.000379222],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9833014,0.002297453,0.0004842814,0.002914453,0.0005493507,0.000378711,0.0002067834,0.00008013414,0.009787435],"genre_scores_gemma":[0.9954855,0.00004626509,0.0002859405,0.001210299,0.00006874166,0.000006655088,0.0001190557,0.000006810276,0.002770668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6682513,"threshold_uncertainty_score":0.639982,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2033933930","doi":"10.1016/j.cbpb.2007.06.003","title":"A comparative study on innate immune parameters in the epidermal mucus of various fish species","year":2007,"lang":"en","type":"article","venue":"Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":402,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Marine Biosciences; Dalhousie University","funders":"National Research Council Canada; Ford Foundation","keywords":"Biology; Mucus; Salvelinus; Arctic char; Lysozyme; Hagfish; Gadus; Bass (fish); Trout; Zoology; Biochemistry; Fishery; Ecology","authors":[{"name":"Sangeetha Subramanian","is_ca":true},{"name":"Shawna L. MacKinnon","is_ca":true},{"name":"Neil W. Ross","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02195774201964595,"gpt":0.2877002996679379,"spread":0.265742557648292,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004760536,0.0004438173,0.000789634,0.00007035279,0.0001910109,0.00001393528,0.0003694374,0.0003733221,0.00003688873],"category_scores_gemma":[0.00005145731,0.0003281741,0.0001203871,0.0002110856,0.001593527,0.00002570425,0.0002118072,0.0004885279,0.000006480561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002003557,"about_ca_system_score_gemma":0.00003118701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000232353,"about_ca_topic_score_gemma":0.000007663793,"domain_scores_codex":[0.9977829,0.0003981121,0.0005628723,0.0007234422,0.00004117337,0.0004915432],"domain_scores_gemma":[0.9987986,0.000348184,0.0002898177,0.0004407175,0.00007521761,0.00004746905],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000832828,0.0007490605,0.001327273,0.00005374818,0.0004426123,0.00001898816,0.001976847,0.000003428896,0.9932429,0.0004675616,0.0008303559,0.00005440814],"study_design_scores_gemma":[0.00179013,0.0005608077,0.02221946,0.00003802264,0.0001026108,0.00003293757,0.007331519,0.000001559773,0.965261,0.0001852647,0.002126959,0.0003496636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950075,0.002270645,0.00004706823,0.0001840995,0.0001169511,0.0005116624,0.0001364024,0.00001953853,0.001706128],"genre_scores_gemma":[0.9985275,0.00004428985,0.00002461467,0.0004103816,0.00003275891,0.00004453287,0.0006844543,0.000007776211,0.0002236773],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02798182,"threshold_uncertainty_score":0.999917,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2136490136","doi":"10.1101/gr.1687304","title":"Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics","year":2004,"lang":"en","type":"article","venue":"Genome Research","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":325,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"BC Cancer Agency; Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Canada's Michael Smith Genome Sciences Centre; Genome Canada","keywords":"Biology; Expressed sequence tag; Complementary DNA; cDNA library; Salmo; Oncorhynchus; Rainbow trout; Genetics; Rapid amplification of cDNA ends; Microarray; Gene; Molecular biology; Gene expression; Fishery; Molecular cloning; Fish <Actinopterygii>","authors":[{"name":"Matthew L. Rise","is_ca":true},{"name":"Kristian R. von Schalburg","is_ca":false},{"name":"Gordon D. Brown","is_ca":false},{"name":"Melanie A. Mawer","is_ca":false},{"name":"Robert H. Devlin","is_ca":false},{"name":"Nathanaël Kuipers","is_ca":false},{"name":"Maura Busby","is_ca":false},{"name":"Marianne Beetz-Sargent","is_ca":false},{"name":"Roberto Alberto","is_ca":false},{"name":"A. R. Gibbs","is_ca":false},{"name":"Peter Hunt","is_ca":false},{"name":"Robert Shukin","is_ca":false},{"name":"Jeffrey A. Zeznik","is_ca":false},{"name":"Colleen C. Nelson","is_ca":false},{"name":"Simon R. M. Jones","is_ca":false},{"name":"Duane E. Smailus","is_ca":false},{"name":"Steven J.M. Jones","is_ca":false},{"name":"Jacqueline E. Schein","is_ca":false},{"name":"Marco A. Marra","is_ca":false},{"name":"Yaron S.N. Butterfield","is_ca":false},{"name":"Jeff Stott","is_ca":false},{"name":"Siemon H. S. Ng","is_ca":false},{"name":"William S. Davidson","is_ca":false},{"name":"Ben F. Koop","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05942269214870017,"gpt":0.3175539583810691,"spread":0.2581312662323689,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005681998,0.0001008744,0.0001460044,0.0001555123,0.0002282534,0.00003638291,0.0001958078,0.00006143357,0.0000154271],"category_scores_gemma":[0.00004749675,0.00009466914,0.000006313657,0.0001300679,0.0003560963,0.0001055039,0.0007545056,0.0001198502,0.00002219003],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000326896,"about_ca_system_score_gemma":0.00005715612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003883611,"about_ca_topic_score_gemma":0.00003552161,"domain_scores_codex":[0.9990653,0.00005827763,0.0002013559,0.0004044283,0.00004352941,0.0002270764],"domain_scores_gemma":[0.9994428,0.00003609533,0.00006312608,0.0003435615,0.00008047168,0.00003399632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008286269,0.00007366353,0.001044489,0.0001625296,0.00007491458,0.000004275379,0.002010722,1.091087e-7,0.9610601,0.000523744,0.000250569,0.03471199],"study_design_scores_gemma":[0.006413473,0.0003275588,0.174858,0.0004687201,0.0002007796,0.0002144176,0.01722217,0.00005580274,0.1337595,0.0001688618,0.665244,0.00106671],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918961,0.004986748,0.002098282,0.0002102054,0.00002758013,0.0003809884,0.0002590716,0.0000139736,0.0001270619],"genre_scores_gemma":[0.991402,0.001005513,0.003653931,0.00001752756,0.00001906483,0.00001432203,0.003616669,0.00001199612,0.0002589849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8273006,"threshold_uncertainty_score":0.3860495,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2415222449","doi":"10.1038/ncomms11757","title":"The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts","year":2016,"lang":"en","type":"article","venue":"Nature Communications","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":310,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Science and Technology Directorate; National Institute of Food and Agriculture; Agricultural Research Service; U.S. Department of Homeland Security; Battelle; U.S. Department of Agriculture","keywords":"Catfish; Ictalurus; Biology; Genome; Evolutionary biology; Vertebrate; Ictaluridae; Genetics; Reference genome; Whole genome sequencing; Gene; Computational biology; Fishery; Fish <Actinopterygii>","authors":[{"name":"Zhanjiang Liu","is_ca":false},{"name":"Shikai Liu","is_ca":false},{"name":"Jun Yao","is_ca":false},{"name":"Lisui Bao","is_ca":false},{"name":"Jiaren Zhang","is_ca":false},{"name":"Yun Li","is_ca":false},{"name":"Chen Jiang","is_ca":false},{"name":"Luyang Sun","is_ca":false},{"name":"Ruijia Wang","is_ca":false},{"name":"Yu Zhang","is_ca":false},{"name":"Tao Zhou","is_ca":false},{"name":"Qifan Zeng","is_ca":false},{"name":"Qiang Fu","is_ca":false},{"name":"Sen Gao","is_ca":false},{"name":"Ning Li","is_ca":false},{"name":"Sergey Koren","is_ca":false},{"name":"Yanliang Jiang","is_ca":false},{"name":"Aleksey V. Zimin","is_ca":false},{"name":"Peng Xu","is_ca":false},{"name":"Adam M. Phillippy","is_ca":false},{"name":"Xin Geng","is_ca":false},{"name":"Lin Song","is_ca":false},{"name":"Fanyue Sun","is_ca":false},{"name":"Chao Li","is_ca":false},{"name":"Xiaozhu Wang","is_ca":false},{"name":"Ailu Chen","is_ca":false},{"name":"Yulin Jin","is_ca":false},{"name":"Zihao Yuan","is_ca":false},{"name":"Yujia Yang","is_ca":false},{"name":"Suxu Tan","is_ca":false},{"name":"Eric Peatman","is_ca":false},{"name":"Jianguo Lü","is_ca":false},{"name":"Zhenkui Qin","is_ca":false},{"name":"Rex A. Dunham","is_ca":false},{"name":"Zhaoxia Li","is_ca":false},{"name":"Tad S. Sonstegard","is_ca":false},{"name":"Jianbin Feng","is_ca":false},{"name":"Roy G. Danzmann","is_ca":true},{"name":"Steven Schroeder","is_ca":false},{"name":"Brian E. Scheffler","is_ca":false},{"name":"Mary V. Duke","is_ca":false},{"name":"Linda Ballard","is_ca":false},{"name":"Huseyin Kucuktas","is_ca":false},{"name":"Ludmilla Kaltenboeck","is_ca":false},{"name":"Haixia Liu","is_ca":false},{"name":"Jonathan W. Armbruster","is_ca":false},{"name":"Yangjie Xie","is_ca":false},{"name":"Mona L. Kirby","is_ca":false},{"name":"Yi Tian","is_ca":false},{"name":"Mary Elizabeth Flanagan","is_ca":false},{"name":"Weijie Mu","is_ca":false},{"name":"Geoffrey C. Waldbieser","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01181831056391118,"gpt":0.2499192255878979,"spread":0.2381009150239868,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002227863,0.00009438486,0.00009517713,0.0000728261,0.0005250573,0.0000135936,0.001145035,0.0001936878,0.000005855837],"category_scores_gemma":[0.0001255381,0.00004382866,0.00005179206,0.000270178,0.0005091941,0.0001877444,0.0003315706,0.00033805,0.00005624846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001563347,"about_ca_system_score_gemma":0.00004209384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001298824,"about_ca_topic_score_gemma":0.006592806,"domain_scores_codex":[0.9992011,0.0002617655,0.0002388228,0.0001146091,0.00003169017,0.0001520307],"domain_scores_gemma":[0.9984139,0.0002481342,0.0001540127,0.00103371,0.00014162,0.000008613562],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004001502,0.000123255,0.000972642,0.00001696482,0.00006734574,2.134823e-7,0.006323208,0.000001955437,0.9355549,0.045031,0.005239045,0.006629471],"study_design_scores_gemma":[0.001449168,0.00008016909,0.08429153,0.0002171685,0.0001079117,0.00001405413,0.006923608,0.00004185811,0.03095798,0.008947195,0.8666072,0.0003621024],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7342764,0.2047022,0.0009538269,0.0501412,0.0008342251,0.002610855,0.00009388274,0.0001510608,0.006236395],"genre_scores_gemma":[0.9966069,0.00201871,0.00004569819,0.0001185766,0.0000106886,0.00008322472,0.0001253725,0.000005817169,0.0009849992],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9045969,"threshold_uncertainty_score":0.4038369,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2980304269","doi":"10.3389/fimmu.2019.02292","title":"A Comparison of the Innate and Adaptive Immune Systems in Cartilaginous Fish, Ray-Finned Fish, and Lobe-Finned Fish","year":2019,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":296,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Memorial University of Newfoundland","keywords":"Biology; Innate immune system; Acquired immune system; Immune system; Major histocompatibility complex; Classical complement pathway; Immunology; Complement system","authors":[{"name":"Nicole C. Smith","is_ca":true},{"name":"Matthew L. Rise","is_ca":true},{"name":"Sherri L. Christian","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02213263357201293,"gpt":0.2659411320414748,"spread":0.2438084984694619,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004436928,0.0007575632,0.003657549,0.0006584976,0.0001342271,0.00003525422,0.0008843258,0.001388635,0.00002454742],"category_scores_gemma":[0.0001054695,0.0005757456,0.0003322636,0.0005926904,0.001000781,0.00009300524,0.0009070499,0.001330656,0.00001852011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001905992,"about_ca_system_score_gemma":0.0001802882,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004230283,"about_ca_topic_score_gemma":0.0002906002,"domain_scores_codex":[0.9955299,0.001313368,0.001462334,0.0008705353,0.00005952632,0.0007642971],"domain_scores_gemma":[0.9978377,0.0001587953,0.001027654,0.0008764106,0.00007562115,0.00002386907],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003142302,0.002140087,0.01563476,0.03408891,0.01316011,0.0001243485,0.01014951,0.00005012107,0.004555926,0.001794809,0.3270212,0.5881379],"study_design_scores_gemma":[0.002991179,0.0002822133,0.003237806,0.005475658,0.001003318,0.00005812274,0.002412515,0.00001165276,0.00009141293,0.00002408878,0.9836995,0.000712509],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006082169,0.9865112,0.00002653056,0.0001541082,0.004071607,0.002488595,0.0003777683,0.00003237008,0.0002556089],"genre_scores_gemma":[0.01139433,0.9843303,0.00004390955,0.0001451062,0.00002627381,0.0001993292,0.0006905876,0.00007345968,0.003096739],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.6566784,"threshold_uncertainty_score":0.9999078,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2081197766","doi":"10.1016/s0145-305x(01)00037-4","title":"Antimicrobial mechanisms of fish phagocytes and their role in host defense","year":2001,"lang":"en","type":"review","venue":"Developmental & Comparative Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":294,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phagocytosis; Antimicrobial; Microbiology; Defence mechanisms; Multicellular organism; Phagocyte; Immune system; Bacteria; Innate immune system; Cell biology; Immunology; Biochemistry; Cell; Genetics; Gene","authors":[{"name":"Norman F. Neumann","is_ca":false},{"name":"James L. Stafford","is_ca":true},{"name":"Daniel R. Barreda","is_ca":true},{"name":"A.Jerald Ainsworth","is_ca":false},{"name":"Miodrag Belosevic","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03079587241197852,"gpt":0.2773551959739774,"spread":0.2465593235619989,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001973776,0.0008576045,0.002803111,0.0005689228,0.0001591073,0.00002342493,0.0005667253,0.0007199533,0.0004471115],"category_scores_gemma":[0.00001796686,0.0006857237,0.0003144522,0.0005136303,0.0006671809,0.0001120959,0.000663921,0.0006687153,0.0003555549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001823695,"about_ca_system_score_gemma":0.0002310385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007971983,"about_ca_topic_score_gemma":0.0001684055,"domain_scores_codex":[0.9969545,0.0005478169,0.001057468,0.0007646296,0.00003081995,0.0006447878],"domain_scores_gemma":[0.9988507,0.0001973248,0.0005805841,0.0002757874,0.00006791098,0.00002768345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001196952,0.002962671,0.0002996362,0.006800441,0.01504716,0.0002212755,0.01458172,6.055157e-7,0.2479101,0.01066371,0.02145302,0.6788628],"study_design_scores_gemma":[0.001553335,0.0001113865,0.0002399024,0.002302492,0.0002671593,0.0004797801,0.002224316,1.314076e-7,0.01098733,0.0001027091,0.9809515,0.00077994],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.006605878,0.9891205,0.00004217022,0.00001985489,0.0004299822,0.001197102,0.0003960138,0.00005556443,0.002132939],"genre_scores_gemma":[0.01296684,0.9829236,0.0001734798,0.0001287997,0.00001384483,0.0001151103,0.00231828,0.00004890441,0.001311128],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9594985,"threshold_uncertainty_score":0.9995594,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964543478","doi":"10.1590/s1678-91992006000200003","title":"Effects of Garlic (Alliumsativum) and chloramphenicol on growth performance, physiological parameters and survival of Nile tilapia (Oreochromis niloticus)","year":2006,"lang":"en","type":"article","venue":"˜The œJournal of venomous animals and toxins including tropical diseases","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":287,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hatch (Canada)","funders":"","keywords":"Allium sativum; Oreochromis; Biology; Nile tilapia; Chloramphenicol; Animal science; Feed conversion ratio; Sativum; Antibiotics; Botany; Body weight; Fish <Actinopterygii>; Biochemistry; Endocrinology; Fishery","authors":[{"name":"A. M. Shalaby","is_ca":true},{"name":"Yassir Khattab","is_ca":false},{"name":"A. M. Abdel Rahman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01218002470802991,"gpt":0.2209938764645595,"spread":0.2088138517565296,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009706878,0.000209536,0.000532901,0.00008123862,0.0001747225,0.00001875951,0.0001610796,0.00009892991,0.00001850166],"category_scores_gemma":[0.00005691535,0.0001276973,0.0001183303,0.00008296601,0.0005996749,0.00006291383,0.0001592828,0.0001694005,0.000001494658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001680146,"about_ca_system_score_gemma":0.0000207076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002643456,"about_ca_topic_score_gemma":0.000004949663,"domain_scores_codex":[0.9989195,0.0001746131,0.0004161249,0.0001828171,0.00007646922,0.0002304747],"domain_scores_gemma":[0.9990635,0.0003535485,0.0003526674,0.00009782696,0.00007723085,0.00005521793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004119433,0.001735693,0.07927911,0.0009636015,0.0007394597,0.00003541647,0.0003397148,0.00002209338,0.903706,0.00578119,0.001214112,0.002064181],"study_design_scores_gemma":[0.002448278,0.002749294,0.9721209,0.0002084995,0.0005420951,0.00003103169,0.0001365771,0.00001681968,0.02062193,0.0006686366,0.0002639764,0.0001919921],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937685,0.005706938,0.00003912403,0.00005879946,0.00007948533,0.0002224114,0.00003866777,0.000009322549,0.00007681284],"genre_scores_gemma":[0.998903,0.0008988868,0.00004416267,0.00004941461,0.00005070318,0.000003406567,0.000007434764,0.00001133239,0.00003161318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8928418,"threshold_uncertainty_score":0.5207345,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165247607","doi":"10.1093/icb/45.2.263","title":"Physiological Causes and Consequences of Social Status in Salmonid Fish","year":2005,"lang":"en","type":"article","venue":"Integrative and Comparative Biology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":283,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Carleton University","funders":"","keywords":"Rainbow trout; Aggression; Dominance (genetics); Social hierarchy; Juvenile; Biology; Social status; Social relation; Fish <Actinopterygii>; Dominance hierarchy; Social stress; Trout; Ecology; Psychology; Zoology; Fishery; Developmental psychology; Social psychology; Neuroscience","authors":[{"name":"Kathleen M. Gilmour","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04620003872019369,"gpt":0.315450370384472,"spread":0.2692503316642784,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007010368,0.0001827055,0.0004509283,0.00008072746,0.00008736873,0.00000678216,0.0000810014,0.0001545466,0.0002107216],"category_scores_gemma":[0.00002344035,0.0001189275,0.00004171361,0.00008695809,0.001671238,0.00006351279,0.00008012692,0.0001788355,0.0000180972],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000177433,"about_ca_system_score_gemma":0.00002490005,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001339736,"about_ca_topic_score_gemma":0.0006203199,"domain_scores_codex":[0.9989348,0.0002937375,0.0002389792,0.0002794495,0.00001076901,0.0002422377],"domain_scores_gemma":[0.9996479,0.0001117466,0.0001094984,0.00005285544,0.00006090224,0.00001709694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000316055,0.0001726466,0.01702701,0.000009994262,0.0001973722,0.000001727636,0.006163491,4.360789e-7,0.9002948,0.06781255,0.006027915,0.001976004],"study_design_scores_gemma":[0.003701385,0.001342853,0.4785799,0.00006816529,0.00009868728,0.00002082497,0.02609053,0.000007362255,0.300759,0.003060306,0.1856146,0.0006563441],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938769,0.002919385,0.00001960805,0.0004695367,0.00005077247,0.0001863292,0.0001663042,0.0000143322,0.002296828],"genre_scores_gemma":[0.9986991,0.0002490318,0.00005139648,0.0002777251,0.00001949271,0.00001968556,0.0001390288,0.000002360879,0.0005421713],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5995358,"threshold_uncertainty_score":0.6157744,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2142919890","doi":"10.1186/1471-2164-9-427","title":"The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen","year":2008,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":277,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences; Dalhousie University; Institute for Marine Biosciences","funders":"","keywords":"Aeromonas salmonicida; Biology; Genetics; Pseudogene; Genome; Plasmid; Gene; Virulence; Integron; Pathogen; Microbiology; Pathogenicity island; Bacteria","authors":[{"name":"Michael Reith","is_ca":true},{"name":"Rama Kant Singh","is_ca":true},{"name":"Bruce A. Curtis","is_ca":true},{"name":"Jessica M. Boyd","is_ca":true},{"name":"Anne Bouevitch","is_ca":true},{"name":"Jennifer Kimball","is_ca":true},{"name":"Janet Munholland","is_ca":true},{"name":"Colleen Murphy","is_ca":true},{"name":"Darren Sarty","is_ca":true},{"name":"Jason S. Williams","is_ca":true},{"name":"John H. E. Nash","is_ca":true},{"name":"Stewart C. Johnson","is_ca":true},{"name":"Laura L. Brown","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01131788558880047,"gpt":0.2027003060464032,"spread":0.1913824204576027,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000246297,0.0002250918,0.000307843,0.00006867028,0.0005414031,0.000009870082,0.0007172502,0.0001905262,0.00004572026],"category_scores_gemma":[0.00005096156,0.0001376514,0.0002434712,0.0002175123,0.0006327576,0.00005583765,0.0002818088,0.0001979926,0.0001111822],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002085707,"about_ca_system_score_gemma":0.0002303161,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005067726,"about_ca_topic_score_gemma":0.00154429,"domain_scores_codex":[0.998583,0.0002200428,0.0005223828,0.0002863959,0.00005718988,0.0003310254],"domain_scores_gemma":[0.9986596,0.000148855,0.0003641175,0.0006724436,0.0001318629,0.00002310345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000266848,0.0001316739,0.002537288,0.00003856411,0.000284308,0.000003538546,0.006854683,0.00008321823,0.9836037,0.003127435,0.002763689,0.0003050352],"study_design_scores_gemma":[0.003629909,0.0004818599,0.183116,0.00005719008,0.0006740854,0.0001020039,0.01269342,0.00004476603,0.2064978,0.002194442,0.5895925,0.000916102],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9777941,0.01988887,0.0002349448,0.0001520318,0.0003009565,0.0005274072,0.00004661886,0.00002845594,0.001026664],"genre_scores_gemma":[0.9965996,0.001047527,0.00009194086,0.00009489989,0.00004364207,0.0000230484,0.000159799,0.00002383154,0.001915693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7771059,"threshold_uncertainty_score":0.5613262,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984521113","doi":"10.1016/s1095-6433(02)00109-5","title":"Skin morphology and humoral non-specific defence parameters of mucus and plasma in rainbow trout, coho and Atlantic salmon","year":2002,"lang":"en","type":"article","venue":"Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":275,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island; Institute for Marine Biosciences","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lysozyme; Rainbow trout; Salmo; Mucus; Biology; Juvenile; Oncorhynchus; Alkaline phosphatase; Smoltification; Fishery; Zoology; Protease; Salmonidae; Ecology; Enzyme; Biochemistry; Fish <Actinopterygii>","authors":[{"name":"Mark D. Fast","is_ca":true},{"name":"Daniel Sims","is_ca":true},{"name":"John F. Burka","is_ca":true},{"name":"Ahmed Mustafa","is_ca":true},{"name":"Neil W. Ross","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01706157049839418,"gpt":0.2354303688722605,"spread":0.2183687983738663,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0001022704,0.0005099363,0.001033483,0.0001127826,0.0001432453,0.00001356679,0.0001788476,0.0003736143,0.00008285694],"category_scores_gemma":[0.00003350566,0.0004196263,0.00008913168,0.0001599363,0.003028972,0.00006908731,0.0002640294,0.0004605734,0.00001215814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000195205,"about_ca_system_score_gemma":0.00001159822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005664923,"about_ca_topic_score_gemma":0.00001246011,"domain_scores_codex":[0.9977105,0.0004319617,0.0004346328,0.0009292092,0.00002920773,0.0004645088],"domain_scores_gemma":[0.9991161,0.0002158515,0.0002543392,0.0002683669,0.00007570245,0.00006967871],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005830166,0.0001880543,0.0009563011,0.00009036685,0.0002932186,0.00001396412,0.002167725,0.000004781176,0.993538,0.0006430583,0.001086293,0.0004352513],"study_design_scores_gemma":[0.004161788,0.0007485195,0.03573459,0.0001694325,0.0001321113,0.0001420844,0.003297345,0.0002204756,0.9529919,0.0006251752,0.001060415,0.0007161608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990505,0.008586911,0.00002915165,0.0001076439,0.0001037236,0.000394199,0.0000691992,0.0000176474,0.0001865557],"genre_scores_gemma":[0.9981985,0.0009906626,0.0001483234,0.0001534084,0.00001922395,0.00006671645,0.0002834483,0.00001417634,0.0001255131],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04054606,"threshold_uncertainty_score":0.9998255,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050607994","doi":"10.1016/j.fsi.2007.10.009","title":"Cortisol response and immune-related effects of Atlantic salmon (Salmo salar Linnaeus) subjected to short- and long-term stress","year":2007,"lang":"en","type":"article","venue":"Fish & Shellfish Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":271,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Marine Biosciences","funders":"","keywords":"Aeromonas salmonicida; Salmo; Biology; Immune system; Lipopolysaccharide; Endocrinology; Internal medicine; Fish <Actinopterygii>; Andrology; Immunology; Fishery; Medicine","authors":[{"name":"Mark D. Fast","is_ca":true},{"name":"S. Hosoya","is_ca":true},{"name":"Stewart C. Johnson","is_ca":true},{"name":"Luis O.B. Afonso","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004549241441129158,"gpt":0.2227358243507681,"spread":0.218186582909639,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005330524,0.0004961109,0.0008271069,0.0004751055,0.0002254679,0.00003450996,0.0004238651,0.0007381786,0.0002404578],"category_scores_gemma":[0.0003671786,0.000479934,0.0001461022,0.0004207247,0.0006675218,0.000131449,0.0005577854,0.0005368072,0.0001017363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005329548,"about_ca_system_score_gemma":0.00004390993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008557114,"about_ca_topic_score_gemma":0.0001614848,"domain_scores_codex":[0.9969532,0.0004648335,0.0008837457,0.0007488156,0.00006414095,0.0008852755],"domain_scores_gemma":[0.9982976,0.000597861,0.0002492675,0.0006109648,0.0001537579,0.00009056491],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003825862,0.000310385,0.09429638,0.0002052383,0.0009673194,0.0002404199,0.0007533084,3.345429e-7,0.8937104,0.0001531426,0.001072213,0.004465024],"study_design_scores_gemma":[0.002324365,0.0009786922,0.764724,0.0002460351,0.0002917128,0.0001833221,0.0001553332,4.076338e-7,0.2289386,0.00001547747,0.001718175,0.0004239287],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9833533,0.01382795,0.0001026097,0.000348967,0.0008430103,0.001125668,0.00006371096,0.0001721117,0.0001626749],"genre_scores_gemma":[0.9968863,0.000809529,0.00002801692,0.0003292125,0.00002125661,0.00002532813,0.0005276717,0.00005810041,0.001314661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6704276,"threshold_uncertainty_score":0.9997652,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1527474303","doi":"10.1111/j.1365-2672.2010.04713.x","title":"The effect of Pediococcus acidilactici on the gut microbiota and immune status of on-growing red tilapia (Oreochromis niloticus)","year":2010,"lang":"en","type":"article","venue":"Journal of Applied Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":264,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Lallemand","keywords":"Pediococcus acidilactici; Oreochromis; Tilapia; Biology; Microbiology; Probiotic; Gut flora; Immune system; Food science; Pediococcus; Bacteria; Lactobacillus; Immunology; Fishery; Lactic acid; Fish <Actinopterygii>; Fermentation","authors":[{"name":"Robert Ferguson","is_ca":false},{"name":"Daniel L. Merrifield","is_ca":false},{"name":"Glenn M. Harper","is_ca":false},{"name":"Mark Rawling","is_ca":false},{"name":"Sanaa A. Mustafa","is_ca":false},{"name":"Simona Picchietti","is_ca":false},{"name":"José Luís Balcázar","is_ca":false},{"name":"Simon J. Davies","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003677752960174523,"gpt":0.2101916155070959,"spread":0.2065138625469214,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001255218,0.0003916419,0.0008412102,0.0001872609,0.0003168694,0.00002400039,0.000698581,0.0003943543,0.0002246695],"category_scores_gemma":[0.0002707328,0.0001979929,0.0003293516,0.0001745997,0.001156402,0.0000529741,0.000217405,0.001153274,0.00005265964],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000380453,"about_ca_system_score_gemma":0.00008094277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001105449,"about_ca_topic_score_gemma":0.000008417082,"domain_scores_codex":[0.9977545,0.0003100102,0.0009548403,0.0003014976,0.00004627342,0.000632939],"domain_scores_gemma":[0.9965189,0.00146023,0.001254632,0.0005633415,0.0001505862,0.00005229223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0039059,0.0001182478,0.0001435575,0.00005426844,0.0008033441,0.000005546726,0.0003073044,0.000003992889,0.9798476,0.003429192,0.009521639,0.001859428],"study_design_scores_gemma":[0.003094404,0.001420343,0.001558776,0.00007360146,0.0003387626,0.0001494365,0.0004118171,2.33615e-7,0.9292651,0.0000915831,0.06339958,0.0001963627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993034,0.001520012,0.000005268139,0.0008369785,0.001122955,0.0006266722,0.00007414045,0.00001277793,0.002767202],"genre_scores_gemma":[0.9989839,0.0002821465,0.00004878537,0.0002143764,0.00008560863,0.000008866178,0.0000387656,0.0000296343,0.0003079617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05387794,"threshold_uncertainty_score":0.8073915,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2167288117","doi":"10.1016/j.ygcen.2009.03.020","title":"Stress transcriptomics in fish: A role for genomic cortisol signaling","year":2009,"lang":"en","type":"review","venue":"General and Comparative Endocrinology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":263,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Transcriptome; Stressor; Glucocorticoid receptor; Glucocorticoid; Microarray; Gene expression; Gene; Internal medicine; Endocrinology; Hormone; Adaptive response; Genetics; Neuroscience; Medicine","authors":[{"name":"Neelakanteswar Aluru","is_ca":true},{"name":"Mathilakath M. Vijayan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05736901294510913,"gpt":0.3081402606447658,"spread":0.2507712476996566,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00005092948,0.0005800435,0.001972492,0.0002615681,0.0001537742,0.00002891431,0.0003440474,0.0003674483,0.0000845345],"category_scores_gemma":[0.000004651103,0.0004821986,0.0003674845,0.0001232566,0.0001871982,0.00004933925,0.00009716771,0.0004571684,0.00006189986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006658477,"about_ca_system_score_gemma":0.00007789062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000344711,"about_ca_topic_score_gemma":0.0002123101,"domain_scores_codex":[0.9976296,0.0002704878,0.0006490384,0.00070515,0.00001841591,0.0007273104],"domain_scores_gemma":[0.9993755,0.00009230078,0.0002494962,0.0002112358,0.00003686953,0.00003461675],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002949727,0.0004205176,0.00004594257,0.002632344,0.001500358,0.00004187945,0.0009141464,0.00002054422,0.01199864,0.01366106,0.008815975,0.9596536],"study_design_scores_gemma":[0.001387146,0.0002489747,0.00005898656,0.0005479236,0.0006280615,0.00007072557,0.000205387,0.000004471357,0.0003790034,0.0001515674,0.9957948,0.0005229925],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004687684,0.9921191,0.0000754348,0.000044149,0.000348393,0.001534144,0.0006402478,0.00004931722,0.0005015497],"genre_scores_gemma":[0.001780601,0.9914793,0.0001295567,0.0002116702,0.000117308,0.0003523304,0.002692812,0.00002432039,0.003212068],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9869788,"threshold_uncertainty_score":0.999763,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1484217840","doi":"10.1046/j.1432-1327.2001.01996.x","title":"Cloning and expression analysis of rainbow trout <i>Oncorhynchus mykiss</i> tumour necrosis factor‐α","year":2001,"lang":"en","type":"article","venue":"European Journal of Biochemistry","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":253,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Rainbow trout; Cloning (programming); Fishery; Biology; Zoology; Fish <Actinopterygii>; Computer science","authors":[{"name":"Kerry J. Laing","is_ca":false},{"name":"Tiehui Wang","is_ca":false},{"name":"Jun Zou","is_ca":false},{"name":"Jason W. Holland","is_ca":false},{"name":"Suhee Hong","is_ca":false},{"name":"Niels C. Bols","is_ca":true},{"name":"Ikuo Hirono","is_ca":false},{"name":"Takashi Aoki","is_ca":false},{"name":"Christopher J. Secombes","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008586762657718456,"gpt":0.2175580707717231,"spread":0.2089713081140047,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003145305,0.0001803381,0.0003970502,0.0001617533,0.00008924834,0.00003188755,0.0002701909,0.00006511034,0.0002745442],"category_scores_gemma":[0.00006869346,0.0001437043,0.0002928365,0.0002754107,0.000142352,0.0000985491,0.0001182856,0.0002417392,0.000009981649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001799106,"about_ca_system_score_gemma":0.0000204095,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002669804,"about_ca_topic_score_gemma":3.12708e-7,"domain_scores_codex":[0.9988635,0.0001769394,0.0005115999,0.0001928671,0.00005258921,0.0002025377],"domain_scores_gemma":[0.999009,0.00003860478,0.000595865,0.0001859331,0.0001128429,0.0000577372],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001931218,0.00008105611,0.004543537,0.00002461025,0.0008989339,0.00007569432,0.0003425628,0.000006933503,0.9868941,0.000001927313,0.005509266,0.001428253],"study_design_scores_gemma":[0.001258518,0.00008963935,0.01588518,0.0001253463,0.0009674259,0.00009036696,0.0005352259,0.0000012974,0.9690317,0.000002072719,0.01184183,0.0001713968],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922456,0.004296137,0.0003453214,0.00008845766,0.00007793469,0.00003863023,0.00003738336,0.00001314644,0.002857408],"genre_scores_gemma":[0.9962981,0.0002894119,0.0001531322,0.00008428997,0.0000666981,2.202029e-7,0.00005945016,0.00001509601,0.00303365],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01786241,"threshold_uncertainty_score":0.5860091,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2024707034","doi":"10.1371/journal.pone.0084772","title":"Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":251,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Rimouski; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Mutualism (biology); Commensalism; Host (biology); Mucus; Bacteria; Pathogen; Pathogenic bacteria; Salvelinus; Zoology; Microbiology; Ecology; Fish <Actinopterygii>; Genetics; Trout","authors":[{"name":"Sébastien Boutin","is_ca":true},{"name":"Louis Bernatchez","is_ca":true},{"name":"Céline Audet","is_ca":true},{"name":"Nicolas Derôme","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03721023986520104,"gpt":0.2255310396212039,"spread":0.1883207997560028,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007949948,0.0002368719,0.0004985853,0.0001619819,0.0003442667,0.00007131816,0.0002096823,0.0001375365,0.003813019],"category_scores_gemma":[0.00001160263,0.0002069696,0.0001258449,0.0003823956,0.0001659053,0.0001315416,0.0002237271,0.0002238341,0.001808057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002769947,"about_ca_system_score_gemma":0.000007625782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001648553,"about_ca_topic_score_gemma":0.00007117276,"domain_scores_codex":[0.9987233,0.0001436218,0.0003038486,0.000376069,0.00003306683,0.0004201292],"domain_scores_gemma":[0.9992763,0.00009991387,0.0001314676,0.0003344248,0.0001029182,0.00005497475],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001819226,0.000413112,0.03586752,0.0000282928,0.007172414,0.000001825053,0.0002070551,4.969361e-7,0.8757922,0.0003401266,0.08004214,0.0001165911],"study_design_scores_gemma":[0.002405388,0.00020387,0.825317,0.0001605419,0.01579087,0.00000681411,0.0004934975,0.00002919093,0.02979605,0.0002487832,0.1243884,0.001159607],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925303,0.001060169,0.0001557944,0.00320226,0.00009474761,0.0006303869,0.0002893878,0.0001489729,0.001887972],"genre_scores_gemma":[0.988189,0.00006540486,0.0006305634,0.0007992088,0.0001227671,0.0000376549,0.002688542,0.00001963558,0.007447236],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8459962,"threshold_uncertainty_score":0.9989691,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2066252622","doi":"10.1016/j.cbpb.2008.01.011","title":"Comparison of antimicrobial activity in the epidermal mucus extracts of fish","year":2008,"lang":"en","type":"article","venue":"Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":241,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Marine Biosciences; Dalhousie University","funders":"Ford Foundation","keywords":"Mucus; Salvelinus; Biology; Hagfish; Antimicrobial; Trout; Microbiology; Carp; Fishery; Biochemistry; Ecology; Fish <Actinopterygii>","authors":[{"name":"Sangeetha Subramanian","is_ca":true},{"name":"Neil W. Ross","is_ca":true},{"name":"Shawna L. MacKinnon","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02800939485113304,"gpt":0.3052551540318894,"spread":0.2772457591807563,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001545564,0.0003050811,0.0007140482,0.00003936094,0.0001472375,0.000003546383,0.0002827382,0.0004315056,0.00004346073],"category_scores_gemma":[0.00004861355,0.0002378679,0.0001164012,0.0001363108,0.002153949,0.00002980724,0.0001743758,0.000341364,0.000002490342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008513241,"about_ca_system_score_gemma":0.00005055037,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001985966,"about_ca_topic_score_gemma":0.000002418383,"domain_scores_codex":[0.9984273,0.0002880119,0.0004268965,0.0005044275,0.00002729199,0.0003261252],"domain_scores_gemma":[0.9990739,0.0001658488,0.0003312991,0.0003246674,0.00007063262,0.00003365445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003857749,0.0004587696,0.003516465,0.0001688438,0.0001725128,0.000005058673,0.0005453109,0.000002666375,0.9906279,0.0001302463,0.003882898,0.0001035631],"study_design_scores_gemma":[0.0009980603,0.0001179484,0.00670018,0.00003817146,0.00006159826,0.00006331901,0.0003179703,0.000003798104,0.98879,0.00004463525,0.002633108,0.000231221],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958003,0.002924449,0.00003610124,0.0002450846,0.00007714736,0.0002015598,0.0001637566,0.00001101654,0.0005405807],"genre_scores_gemma":[0.9988413,0.0001540952,0.00003076906,0.0002178017,0.00003010781,0.00001738764,0.000595397,0.000006143808,0.0001069488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003183715,"threshold_uncertainty_score":0.9699972,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118135876","doi":"10.20506/rst.24.1.1565","title":"Vacunas de ADN para peces de vivero","year":2005,"lang":"fr","type":"article","venue":"Revue Scientifique et Technique de l OIE","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":240,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"DNA vaccination; Vaccination; Biology; Infectious hematopoietic necrosis virus; Virology; Aquaculture; Virus; Immune system; Biotechnology; Fish <Actinopterygii>; Immunization; Immunology; Fishery","authors":[{"name":"Niels Lorenzen","is_ca":false},{"name":"Scott E Lapatra","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01872776107565179,"gpt":0.2774429646472784,"spread":0.2587152035716266,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.002805862,0.0004863675,0.0004716239,0.0003134005,0.0004331323,0.0001780249,0.0009220272,0.0009940852,0.002563073],"category_scores_gemma":[0.0002256962,0.0005379544,0.000401869,0.0005281247,0.000704197,0.0003590463,0.0003911856,0.0009834557,0.001390997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007559014,"about_ca_system_score_gemma":0.0004744648,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002068601,"about_ca_topic_score_gemma":0.0004089079,"domain_scores_codex":[0.9961175,0.0009701288,0.0005100015,0.0008691728,0.0000686924,0.001464555],"domain_scores_gemma":[0.9984692,0.0001389263,0.0002785489,0.000747379,0.0001703981,0.0001955344],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006767696,0.0004963831,0.0004798335,0.001508872,0.000207956,0.000170741,0.00270294,0.00004000476,0.6969581,0.0251286,0.2623083,0.009930592],"study_design_scores_gemma":[0.0004808389,0.00005913617,0.0007349674,0.001832957,0.0002383711,0.000590669,0.0001748124,0.00004924907,0.3231545,0.002151535,0.6700062,0.0005268364],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"other","genre_scores_codex":[0.2528263,0.1235518,0.3730306,0.1430913,0.005728003,0.008518763,0.001632849,0.002701732,0.08891866],"genre_scores_gemma":[0.3753985,0.007100146,0.04883873,0.007445494,0.0008589122,0.0006914557,0.0006395543,0.0001677108,0.5588594],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.4699408,"threshold_uncertainty_score":0.9997072,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2076597255","doi":"10.1016/j.ygcen.2008.09.011","title":"The zebrafish stress axis: Molecular fallout from the teleost-specific genome duplication event","year":2008,"lang":"en","type":"review","venue":"General and Comparative Endocrinology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":227,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Zebrafish; Biology; Gene duplication; Gene; Proopiomelanocortin; Genetics; Genome; Gene family; Corticotropin-releasing hormone; Receptor","authors":[{"name":"Derek Alsop","is_ca":true},{"name":"Mathilakath M. Vijayan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0408185826998985,"gpt":0.2859430124471818,"spread":0.2451244297472834,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00005496701,0.0006341756,0.001174961,0.00006204758,0.0009299057,0.00007054707,0.0009299212,0.0002866142,0.0001384519],"category_scores_gemma":[0.000008552409,0.0003330474,0.0004292461,0.0001637444,0.000807864,0.00004218091,0.000502739,0.0006954591,0.0007191796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005632426,"about_ca_system_score_gemma":0.00006868367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000909361,"about_ca_topic_score_gemma":0.00007590984,"domain_scores_codex":[0.9970421,0.000841874,0.0006168518,0.0007796804,0.00005451272,0.0006649921],"domain_scores_gemma":[0.998485,0.0002823617,0.0004011144,0.0007129486,0.0000802197,0.00003832162],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000147674,0.0003500738,0.0000528717,0.0003071489,0.006270156,0.00011849,0.001397394,0.000008519326,0.005293787,0.04808656,0.1099361,0.8280312],"study_design_scores_gemma":[0.0004202045,0.00005863365,0.0003916539,0.0001370153,0.0003566659,0.0001261625,0.0002241942,3.897049e-7,0.0001442744,0.0001040236,0.9976504,0.0003863469],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002473883,0.9938462,0.00009928412,0.0003732421,0.0006060233,0.001252627,0.000500049,0.00006371936,0.0007849199],"genre_scores_gemma":[0.001824949,0.9900554,0.00001797106,0.0002335439,0.0002453259,0.0004059677,0.003300154,0.00002513131,0.00389152],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8877143,"threshold_uncertainty_score":0.9999121,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2108790553","doi":"10.1177/0192623314540229","title":"Nonlesions, Misdiagnoses, Missed Diagnoses, and Other Interpretive Challenges in Fish Histopathology Studies","year":2014,"lang":"en","type":"review","venue":"Toxicologic Pathology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":222,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Histopathology; Fish <Actinopterygii>; Medical diagnosis; Pathology; Medicine; Biology; Fishery","authors":[{"name":"Jeffrey C. Wolf","is_ca":false},{"name":"Wes Baumgartner","is_ca":false},{"name":"Vicki S. Blazer","is_ca":false},{"name":"Alvin C. Camus","is_ca":false},{"name":"Jeffery A. Engelhardt","is_ca":false},{"name":"John W. Fournie","is_ca":false},{"name":"Salvatore Frasca","is_ca":false},{"name":"David B. Groman","is_ca":true},{"name":"Michael L. Kent","is_ca":false},{"name":"Lester H. Khoo","is_ca":false},{"name":"J. Mac Law","is_ca":false},{"name":"Eric Lombardini","is_ca":false},{"name":"Christine Ruehl-Fehlert","is_ca":false},{"name":"Helmut Segner","is_ca":false},{"name":"Stephen A. Smith","is_ca":false},{"name":"Jan M. Spitsbergen","is_ca":false},{"name":"Klaus Weber","is_ca":false},{"name":"Marilyn J. Wolfe","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1219515616681526,"gpt":0.3573562005826711,"spread":0.2354046389145185,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0009866768,0.001055007,0.004044807,0.0006398737,0.0001714268,0.00001590724,0.0007186318,0.002037787,0.0003387526],"category_scores_gemma":[0.001605131,0.0008014552,0.0004315924,0.0002191322,0.001290172,0.00005510837,0.0008304558,0.001122315,0.0006217533],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002732419,"about_ca_system_score_gemma":0.0001161615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008764305,"about_ca_topic_score_gemma":0.0002846148,"domain_scores_codex":[0.9933805,0.002892998,0.001136744,0.001591628,0.0000416904,0.0009564621],"domain_scores_gemma":[0.9962476,0.002181718,0.0007072515,0.0007323098,0.00006679045,0.00006436433],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001055222,0.00110108,0.0001279597,0.0104623,0.0007945441,0.002201678,0.002714883,2.522097e-7,0.0003717837,0.00450157,0.04449166,0.9331267],"study_design_scores_gemma":[0.0007753951,0.0005755484,0.0001786306,0.003961146,0.0008709484,0.0008748416,0.0008148563,6.828555e-8,0.00001104792,0.0002182953,0.9909357,0.0007834746],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0005081811,0.9935412,0.000005163143,0.0005860814,0.001293872,0.001514649,0.0002690867,0.00017225,0.002109501],"genre_scores_gemma":[0.0004044856,0.9945295,0.00006925315,0.002060184,0.00009425773,0.0008797533,0.0002635612,0.00007857043,0.001620465],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9464441,"threshold_uncertainty_score":0.9994437,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166724355","doi":"10.1111/j.1365-2761.2006.00755.x","title":"Isolation of viral haemorrhagic septicaemia virus from muskellunge, <i>Esox masquinongy</i> (Mitchill), in Lake St Clair, Michigan, USA reveals a new sublineage of the North American genotype","year":2006,"lang":"en","type":"article","venue":"Journal of Fish Diseases","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":220,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"U.S. Geological Survey; Michigan Department of Natural Resources","keywords":"Biology; Virology; Virus; Esox; Genotype; Gene; Fish <Actinopterygii>; Fishery; Pike; Genetics","authors":[{"name":"Mohamed Faisal","is_ca":false},{"name":"Mark Thomas","is_ca":false},{"name":"Gary Whelan","is_ca":false},{"name":"William N. Batts","is_ca":false},{"name":"James R. Winton","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005803314035333722,"gpt":0.2081788584625916,"spread":0.2023755444272579,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000112113,0.0002360421,0.0005893294,0.0001804549,0.00006628756,0.00001937408,0.0004811011,0.00009350142,0.0005978653],"category_scores_gemma":[0.00009891996,0.0001703233,0.0003831521,0.0004283414,0.0002850526,0.0001818301,0.0001131525,0.0002838653,0.00001617974],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003454255,"about_ca_system_score_gemma":0.0001873507,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006941943,"about_ca_topic_score_gemma":0.04113941,"domain_scores_codex":[0.9982486,0.0002137172,0.0009113256,0.0002152154,0.000112093,0.0002990447],"domain_scores_gemma":[0.9981385,0.0001086231,0.001229005,0.0003121999,0.0001507155,0.00006092483],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001125784,0.0008469268,0.7385598,0.00007153359,0.0003823312,0.00003536713,0.0002639801,0.0001576771,0.1612082,0.0000644572,0.09645996,0.0008239881],"study_design_scores_gemma":[0.002014733,0.0001812221,0.9811018,0.0001274669,0.0006334421,0.000009829405,0.0001539406,0.000005282465,0.003770546,0.0001954741,0.01160267,0.0002036089],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952917,0.00191902,0.0000901539,0.0003895841,0.0003064539,0.0002541332,0.001517301,0.000009380939,0.0002223382],"genre_scores_gemma":[0.9975835,0.0001141695,0.0001387842,0.0005279108,0.0001774343,0.00000167035,0.0004440673,0.00001958761,0.0009928431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.242542,"threshold_uncertainty_score":0.9763573,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1963617975","doi":"10.1016/j.vetmic.2013.06.025","title":"Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida, the causative agent of fish furunculosis","year":2013,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":218,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université Laval; Institut Universitaire de Cardiologie et de Pneumologie de Québec","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Aeromonas salmonicida; Biology; Virulence; Microbiology; Bacteria; Genome; Aquaculture; Aeromonas; Fish <Actinopterygii>; Gene; Genetics; Fishery","authors":[{"name":"Stéphanie Dallaire-Dufresne","is_ca":true},{"name":"Katherine H. Tanaka","is_ca":true},{"name":"Mélanie V. Trudel","is_ca":true},{"name":"Andrée Lafaille","is_ca":true},{"name":"Steve J. Charette","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03694619553972846,"gpt":0.2792164213722733,"spread":0.2422702258325449,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002911834,0.0009515908,0.002681886,0.0003061723,0.0002199603,0.00002003351,0.001065222,0.001126381,0.0006874169],"category_scores_gemma":[0.00005501155,0.0006164205,0.0007278597,0.0002944672,0.001601397,0.00007404431,0.001180855,0.0008201153,0.0002360975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001479234,"about_ca_system_score_gemma":0.0001673816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003270398,"about_ca_topic_score_gemma":0.0000490832,"domain_scores_codex":[0.9959481,0.001099649,0.001258327,0.0009335818,0.00003571319,0.0007245893],"domain_scores_gemma":[0.9971998,0.0005574877,0.001342423,0.0007185524,0.0001313174,0.00005039133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003132944,0.0004514765,0.00002210857,0.01097377,0.005116456,0.00005561898,0.0007849752,8.927379e-7,0.8324315,0.0003855075,0.05191953,0.09754486],"study_design_scores_gemma":[0.0006624454,0.0009209531,0.000271094,0.00206661,0.002146382,0.001334233,0.0001806412,9.45516e-8,0.004155934,0.00001343325,0.9875818,0.0006663742],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06261386,0.932126,0.000005153749,0.00005063729,0.0006436836,0.001825501,0.002358862,0.00004184433,0.0003344319],"genre_scores_gemma":[0.01965698,0.9759652,0.00005881868,0.0001318049,0.00005377677,0.0001769369,0.002050935,0.00008089728,0.001824626],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9356623,"threshold_uncertainty_score":0.9996287,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1486335995","doi":"10.1007/s004380000392","title":"Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss)","year":2000,"lang":"en","type":"article","venue":"Molecular Genetics and Genomics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":214,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of Guelph","keywords":"Rainbow trout; Biology; Quantitative trait locus; Genetics; Backcrossing; Genetic linkage; Infectious pancreatic necrosis virus; Plant disease resistance; Marker-assisted selection; Trout; Gene; Virus; Fishery; Fish <Actinopterygii>","authors":[{"name":"Akiyuki Ozaki","is_ca":false},{"name":"Takashi Sakamoto","is_ca":false},{"name":"Sok Kean Khoo","is_ca":false},{"name":"Kazutaka Nakamura","is_ca":false},{"name":"Maria Raquel Moura Coimbra","is_ca":false},{"name":"Tetsuya Akutsu","is_ca":false},{"name":"N. Okamoto","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006721312354792739,"gpt":0.2180866362564955,"spread":0.2113653239017028,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002236719,0.0003244908,0.0004273554,0.0001153421,0.0001640949,0.00006002625,0.0001843044,0.0002197286,0.0002296242],"category_scores_gemma":[0.00004070281,0.0003042837,0.00009449771,0.0002997112,0.0001987376,0.00003146504,0.00006445483,0.0002132209,0.00007893779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001398583,"about_ca_system_score_gemma":0.00005824823,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001844428,"about_ca_topic_score_gemma":0.003375678,"domain_scores_codex":[0.9983319,0.0001993238,0.0003512281,0.0005820967,0.00004986105,0.0004856047],"domain_scores_gemma":[0.9993838,0.00004669537,0.00009497374,0.0003351138,0.00006685275,0.00007256035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009992644,0.0003948681,0.003819606,0.00003839937,0.0005902827,0.00005747757,0.003273075,0.001052086,0.9823454,0.0003214618,0.00132934,0.005778713],"study_design_scores_gemma":[0.02802635,0.00570704,0.5006602,0.0006254474,0.002594605,0.00005546954,0.003389199,0.0003285295,0.2776383,0.006159061,0.1693399,0.00547601],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932291,0.003733734,0.0003381956,0.0001507875,0.00003118642,0.0007293964,0.0001808394,0.00004336011,0.001563437],"genre_scores_gemma":[0.9954541,0.0003962022,0.0005541316,0.0006686129,0.000008057316,0.0000400623,0.0003136526,0.00003870159,0.0025265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7047072,"threshold_uncertainty_score":0.9999409,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2054587692","doi":"10.1086/320426","title":"Plasma Cortisol Concentrations Before and After Social Stress in Rainbow Trout and Brown Trout","year":2001,"lang":"en","type":"article","venue":"Physiological and Biochemical Zoology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":206,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Boehringer Ingelheim Fonds","keywords":"Rainbow trout; Salmo; Brown trout; Acclimatization; Trout; Endocrinology; Biology; Dominance (genetics); Social stress; Fish <Actinopterygii>; Internal medicine; Hydrocortisone; Salmonidae; Animal science; Fishery; Ecology; Medicine; Biochemistry","authors":[{"name":"Katherine A. Sloman","is_ca":false},{"name":"Neil B. Metcalfe","is_ca":false},{"name":"Alan C. Taylor","is_ca":false},{"name":"Kathleen M. Gilmour","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009181590572330757,"gpt":0.2221046386361531,"spread":0.2129230480638223,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003906122,0.0002038905,0.0003466917,0.00003682934,0.0001247585,0.00001693508,0.00008272502,0.0003789846,0.0002055029],"category_scores_gemma":[0.00003294072,0.0001482187,0.00006029511,0.00007422885,0.0009346551,0.00004775062,0.0001954345,0.0002510278,0.00001808648],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001124764,"about_ca_system_score_gemma":0.000007263938,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002162299,"about_ca_topic_score_gemma":0.00005675355,"domain_scores_codex":[0.9988207,0.00009812194,0.0002267719,0.0004498223,0.00001807362,0.0003865402],"domain_scores_gemma":[0.9997549,0.00005236839,0.00005385518,0.00007262862,0.00001925935,0.00004699698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008544206,0.0002930967,0.07403825,0.00003574463,0.000111689,0.00003258809,0.0004283439,8.372861e-8,0.9143672,0.001978903,0.001230552,0.006629126],"study_design_scores_gemma":[0.004591454,0.000660627,0.9763166,0.00003416189,0.0001416023,0.00009746171,0.0005792311,0.00002046528,0.0101916,0.002771864,0.004086521,0.0005083681],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965966,0.001916894,0.000007947974,0.0009476327,0.00005984616,0.0002181634,0.00007411963,0.00003453162,0.0001442608],"genre_scores_gemma":[0.9982798,0.000378918,0.00002709067,0.0005328172,0.00006376229,0.00004139229,0.0002879882,0.000005996179,0.0003823122],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9041756,"threshold_uncertainty_score":0.6044183,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2008682741","doi":"10.1016/s0145-305x(03)00077-6","title":"Functional characterisation of the recombinant tumor necrosis factors in rainbow trout, Oncorhynchus mykiss","year":2003,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":203,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Rainbow trout; Biology; Tumor necrosis factor alpha; Proinflammatory cytokine; Trout; Western blot; In vitro; Recombinant DNA; Cell biology; Molecular biology; Immunology; Gene; Inflammation; Genetics; Fish <Actinopterygii>; Fishery","authors":[{"name":"Jun Zou","is_ca":false},{"name":"Scott Peddie","is_ca":false},{"name":"Giuseppe Scapigliati","is_ca":false},{"name":"Yuequ Zhang","is_ca":false},{"name":"Niels C. Bols","is_ca":true},{"name":"A.E. Ellis","is_ca":false},{"name":"Christopher J. Secombes","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02811255857439115,"gpt":0.2362475644237995,"spread":0.2081350058494084,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001880928,0.0002893692,0.0004690373,0.0001650048,0.0002293018,0.00001221663,0.0002815928,0.0001467739,0.001146095],"category_scores_gemma":[0.00005198713,0.0002095502,0.00013849,0.0003585811,0.0004172851,0.0001273649,0.000133613,0.0003213531,0.0002434059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002349617,"about_ca_system_score_gemma":0.0001601741,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009639237,"about_ca_topic_score_gemma":0.0001094404,"domain_scores_codex":[0.998203,0.0004730544,0.0005408661,0.0003533798,0.00004804718,0.0003817002],"domain_scores_gemma":[0.9993145,0.00009664428,0.0003055703,0.0001970153,0.00007127963,0.00001496625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002565752,0.0004087612,0.1060219,0.00001035797,0.0003574771,0.000002259446,0.004053561,0.000002278566,0.8817006,0.003614169,0.003374167,0.0001978882],"study_design_scores_gemma":[0.001562952,0.00005930194,0.6281875,0.00003003721,0.00002169434,0.0000251659,0.002932287,3.259192e-7,0.347602,0.0001253702,0.01925916,0.0001942139],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953653,0.0004178596,0.00003085177,0.00009645007,0.001027528,0.0005087046,0.0000283936,0.00002718032,0.002497794],"genre_scores_gemma":[0.9954565,0.00001541044,0.00006661304,0.0001321126,0.000004453926,0.00005228409,0.0003274387,0.00001156283,0.003933617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5340987,"threshold_uncertainty_score":0.999767,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2019454757","doi":"10.1080/10641260500320845","title":"Modern Trends in<i>Aeromonas hydrophila</i>Disease Management with Fish","year":2005,"lang":"en","type":"article","venue":"Reviews in Fisheries Science","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":203,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Dalhousie University","keywords":"Aeromonas hydrophila; Aquaculture; Biology; Aeromonas; Antibiotics; Bacterial disease; Disease; Disease management; Pathogen; Biotechnology; Pathogenic bacteria; Vaccination; Shrimp; Bacteria; Microbiology; Fish <Actinopterygii>; Fishery; Medicine; Immunology","authors":[{"name":"Ramasamy Harikrishnan","is_ca":false},{"name":"Chellam Balasundaram","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02062625118117937,"gpt":0.2487700934968964,"spread":0.228143842315717,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000478758,0.0002276278,0.0003167239,0.0003470823,0.0001469749,0.00004201891,0.0006474555,0.00004959459,0.0004835906],"category_scores_gemma":[0.00001515696,0.0001752271,0.00007035561,0.001343672,0.0007023206,0.0004650079,0.0002077886,0.0001675557,0.0002287635],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001370971,"about_ca_system_score_gemma":0.00003344597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001377105,"about_ca_topic_score_gemma":0.0003368908,"domain_scores_codex":[0.998372,0.00009360278,0.0003330786,0.0006019122,0.00007303721,0.0005264052],"domain_scores_gemma":[0.9993371,0.000009190278,0.0001008316,0.0004772037,0.00002111478,0.0000545705],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000550224,0.001045038,0.02783487,0.0003949567,0.00006399716,0.0002887305,0.001844752,0.0002214928,0.01492291,0.005287659,0.06719142,0.8803539],"study_design_scores_gemma":[0.000982133,0.00004015478,0.04596596,0.0002668905,0.00003808817,0.000007616502,0.00008422497,0.00003432194,0.0002386572,0.00005791113,0.9519466,0.0003374871],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6928711,0.06624554,0.0002962385,0.01177037,0.0008383513,0.003280314,0.00008330712,0.0003176944,0.2242971],"genre_scores_gemma":[0.9713638,0.005286681,0.0007088064,0.001383787,0.00002360962,0.00006984643,0.00007276519,0.00001702173,0.02107363],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8847551,"threshold_uncertainty_score":0.7145555,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1976132567","doi":"10.1046/j.1365-2109.2000.00478.x","title":"Comparison of tricaine methanesulphonate (MS222) and clove oil anaesthesia effects on the physiology of juvenile chinook salmon<i>Oncorhynchus tshawytscha</i>(Walbaum)","year":2000,"lang":"en","type":"article","venue":"Aquaculture Research","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":200,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Northern British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Oncorhynchus; Lysozyme; Chinook wind; Juvenile; Biology; Fish <Actinopterygii>; Fishery; Animal science; Fight-or-flight response; Veterinary medicine; Medicine; Ecology; Biochemistry","authors":[{"name":"G K Cho","is_ca":true},{"name":"Daniel D. Heath","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03064226195903378,"gpt":0.3291264943777317,"spread":0.2984842324186979,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001098083,0.000344514,0.0008700042,0.0002116959,0.0003078282,0.00001838765,0.0006537918,0.0003876585,0.0009032489],"category_scores_gemma":[0.0002146819,0.0002045136,0.0002198746,0.0006856049,0.0009041614,0.00006975288,0.0001782308,0.0009281184,0.0003839459],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003398748,"about_ca_system_score_gemma":0.00005584074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003980989,"about_ca_topic_score_gemma":0.0000527587,"domain_scores_codex":[0.9965579,0.00143432,0.0005605063,0.0005706471,0.0002014333,0.0006752312],"domain_scores_gemma":[0.9980205,0.000873847,0.0002221332,0.0006113666,0.0002097628,0.00006237739],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001151857,0.000529928,0.0002932938,0.0002382426,0.0004090079,0.000008174906,0.002654541,0.00000669,0.8997352,0.002358319,0.03962215,0.05299258],"study_design_scores_gemma":[0.003180749,0.001533148,0.01265038,0.0002429632,0.0001926392,0.00001829958,0.001241837,0.00001583978,0.789441,0.0004895537,0.1905883,0.0004051938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9770414,0.01100123,0.000001179767,0.001532137,0.0000755839,0.000560185,0.00007061977,0.00003895024,0.009678727],"genre_scores_gemma":[0.9861894,0.001030821,0.00003385601,0.0002242111,0.00005437585,0.00005415183,0.0002137939,0.00002702154,0.01217238],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1509662,"threshold_uncertainty_score":0.9889942,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1973398439","doi":"10.1016/s1096-4959(01)00360-8","title":"The hypothalamic–pituitary–interrenal axis and the control of food intake in teleost fish","year":2001,"lang":"en","type":"article","venue":"Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":199,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Fish <Actinopterygii>; Food intake; Biology; Hypothalamic–pituitary–gonadal axis; Endocrinology; Internal medicine; Fishery; Medicine; Hormone; Luteinizing hormone","authors":[{"name":"Nicholas J. Bernier","is_ca":true},{"name":"Richard Peter","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009340563764413628,"gpt":0.2376313501341182,"spread":0.2282907863697045,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0002516513,0.0003337697,0.000546283,0.00002519602,0.0002723446,0.00001642001,0.0002774961,0.0003440819,0.00003164009],"category_scores_gemma":[0.00007930971,0.0002073022,0.000102219,0.0001019286,0.003718593,0.00002269134,0.0002395423,0.0003496741,0.00000263934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001065014,"about_ca_system_score_gemma":0.00003045038,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001613596,"about_ca_topic_score_gemma":0.00001425263,"domain_scores_codex":[0.9983502,0.000298606,0.0003966608,0.0005450158,0.00002208887,0.0003874329],"domain_scores_gemma":[0.9990343,0.0003311617,0.0002050741,0.0003228221,0.00006243323,0.00004416154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001116835,0.0000767485,0.00123418,0.00004938737,0.0004432786,0.000003131171,0.0001756385,7.003213e-7,0.994102,0.001710626,0.0006007558,0.0004867386],"study_design_scores_gemma":[0.004956411,0.0002083712,0.002495263,0.0000489327,0.0001234106,0.0001007456,0.0008306524,0.00001424971,0.9765756,0.001436711,0.01289415,0.0003154824],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9764381,0.02144034,0.00006969924,0.0008637199,0.0001008855,0.0002967653,0.0001427071,0.0000138185,0.0006339704],"genre_scores_gemma":[0.9979396,0.000907693,0.000007298895,0.0004072973,0.00003931544,0.00005943603,0.0003216167,0.000007405153,0.0003103514],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02150149,"threshold_uncertainty_score":0.9989927,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3183829914","doi":"10.3390/ani11082167","title":"The Gene Regulatory Roles of Herbal Extracts on the Growth, Immune System, and Reproduction of Fish","year":2021,"lang":"en","type":"review","venue":"Animals","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":199,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"RUDN University; University of Zabol; Chiang Mai University","keywords":"Aquaculture; Biology; Immune system; Mode of action; Medicinal plants; Medicinal herbs; Stressor; Aquatic animal; Fish <Actinopterygii>; Reproduction; Biotechnology; Traditional medicine; Pharmacology; Toxicology; Ecology; Medicine; Fishery; Immunology","authors":[{"name":"Ehsan Ahmadifar","is_ca":false},{"name":"Hamideh P. Fallah","is_ca":true},{"name":"Morteza Yousefi","is_ca":false},{"name":"Mahmoud A.O. Dawood","is_ca":false},{"name":"Seyed Hossein Hoseinifar","is_ca":false},{"name":"Hossein Adineh","is_ca":false},{"name":"Sevdan Yılmaz","is_ca":false},{"name":"Marina Paolucci","is_ca":false},{"name":"Hien Van Doan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02071496098291002,"gpt":0.2537479812278677,"spread":0.2330330202449576,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007672967,0.0002560964,0.000916137,0.00004816529,0.0001975438,0.00001771826,0.0003071628,0.0002689227,0.00003786761],"category_scores_gemma":[0.0001422355,0.0001337538,0.0003504911,0.0001426214,0.0002971402,0.000025032,0.0001650019,0.0002330096,0.00002426279],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002480164,"about_ca_system_score_gemma":0.00005426949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001607879,"about_ca_topic_score_gemma":0.00000508008,"domain_scores_codex":[0.9982228,0.0005239684,0.0006291497,0.0003961003,0.00004343466,0.000184494],"domain_scores_gemma":[0.998224,0.0002286763,0.0007107175,0.0007111586,0.0001160755,0.000009375896],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002162244,0.0003108717,0.000006928865,0.02069762,0.005941182,0.00002403069,0.0004936827,1.99088e-7,0.1163396,0.1247712,0.07901882,0.6521796],"study_design_scores_gemma":[0.0001442949,0.00007236676,0.0001166619,0.005238771,0.001068086,0.00007225814,0.000502804,1.446258e-8,0.01782361,0.00001483094,0.9747874,0.0001588796],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00160133,0.9965463,7.721457e-7,0.0001513495,0.0003126054,0.0005997604,0.00008407527,0.00001878573,0.0006850764],"genre_scores_gemma":[0.01076107,0.9868414,0.000003963832,0.0000193848,0.00006658174,0.00003534328,0.0001617002,0.00002264186,0.002087942],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8957686,"threshold_uncertainty_score":0.5454322,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1942989555","doi":"10.1534/genetics.115.175406","title":"Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon","year":2015,"lang":"en","type":"article","venue":"Genetics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":199,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Norges Forskningsråd","keywords":"Infectious pancreatic necrosis virus; Biology; Virology; Virus; Genetics; Cadherin; Necrosis; Resistance (ecology); Zoology; Ecology; Cell","authors":[{"name":"Thomas Moen","is_ca":false},{"name":"Jacob Torgersen","is_ca":false},{"name":"Nina Santi","is_ca":false},{"name":"William S. Davidson","is_ca":true},{"name":"Matthew Baranski","is_ca":false},{"name":"Jørgen Ødegård","is_ca":false},{"name":"Sissel Kjøglum","is_ca":false},{"name":"Bente Velle","is_ca":false},{"name":"Matthew Kent","is_ca":false},{"name":"Krzysztof P. Lubieniecki","is_ca":true},{"name":"E Isdal","is_ca":false},{"name":"Sigbjørn Lien","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01468593427284789,"gpt":0.2393680478165482,"spread":0.2246821135437003,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000115223,0.0001792981,0.0002298331,0.000108734,0.00005399654,0.00002385624,0.0001919031,0.0001352151,0.00006106184],"category_scores_gemma":[0.0000614496,0.0001663835,0.00005018222,0.0002170102,0.00006047303,0.00002830107,0.0001201115,0.0001044803,0.0009818318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000620727,"about_ca_system_score_gemma":0.00003641198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000305227,"about_ca_topic_score_gemma":0.005597326,"domain_scores_codex":[0.9990198,0.00009155919,0.0002350041,0.0002764555,0.00003221969,0.000344952],"domain_scores_gemma":[0.9995506,0.00002320591,0.00005538477,0.0002683987,0.00004989921,0.00005249174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002337291,0.0001336174,0.03151018,0.00003937009,0.00007474624,0.00003287605,0.001346705,0.00008243329,0.9308885,0.00007590794,0.03386952,0.00171244],"study_design_scores_gemma":[0.004024734,0.0003825124,0.071761,0.0001572501,0.0002268551,0.00002950876,0.000438185,0.000007876414,0.2513134,0.0004396694,0.6703461,0.0008727956],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954848,0.002036746,0.00008763401,0.0001599691,0.0004368759,0.0003390406,0.00003069521,0.00005998134,0.00136428],"genre_scores_gemma":[0.9934909,0.0001206313,0.0002537292,0.0003120769,0.00004783677,0.00003225631,0.00007044509,0.00002044811,0.005651632],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.679575,"threshold_uncertainty_score":0.999796,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2075785603","doi":"10.1016/s0145-305x(01)00092-1","title":"Identification and analysis of an interleukin 8-like molecule in rainbow trout Oncorhynchus mykiss","year":2002,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":197,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Wellcome Trust","keywords":"Rainbow trout; Biology; Trout; Molecular biology; Intron; Open reading frame; Exon; Untranslated region; Gene; Oncorhynchus; genomic DNA; Messenger RNA; Peptide sequence; Genetics; Fishery","authors":[{"name":"Kerry J. Laing","is_ca":false},{"name":"Jun Zou","is_ca":false},{"name":"Tiehui Wang","is_ca":false},{"name":"Niels C. Bols","is_ca":true},{"name":"Ikuo Hırono","is_ca":false},{"name":"Takashi Aoki","is_ca":false},{"name":"Christopher J. Secombes","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02147980024195593,"gpt":0.2640706328256495,"spread":0.2425908325836936,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001581834,0.0002420952,0.0005998103,0.0006853578,0.0001040297,0.00001916344,0.0002798855,0.000164517,0.0008305314],"category_scores_gemma":[0.00001325041,0.0002348671,0.0000916111,0.0007270621,0.0004202672,0.0001823093,0.000156227,0.000200824,0.0001837785],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001108249,"about_ca_system_score_gemma":0.00001796341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009438539,"about_ca_topic_score_gemma":0.0003776295,"domain_scores_codex":[0.9983363,0.0002989939,0.0005692223,0.0004550268,0.00003545433,0.0003050432],"domain_scores_gemma":[0.9994209,0.00005369409,0.0002266595,0.0002146256,0.00006247948,0.00002161571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002182903,0.0005293168,0.009675887,0.000009853484,0.00257523,0.00001168489,0.01152721,0.000009049118,0.9706094,0.0006612317,0.0008994458,0.003273435],"study_design_scores_gemma":[0.003882721,0.00031482,0.6845044,0.00003897636,0.000683702,0.00004833583,0.01076782,0.0004149593,0.2901433,0.00006663099,0.008457808,0.0006764918],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954061,0.00243336,0.0001255591,0.00005966755,0.0001149954,0.0003014736,0.00004902126,0.00003506418,0.001474747],"genre_scores_gemma":[0.9965175,0.0000774626,0.000180517,0.00009895254,0.000003052781,0.00003872327,0.0008065292,0.000008976225,0.00226824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.680466,"threshold_uncertainty_score":0.9577603,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2167104793","doi":"10.1186/1743-422x-4-11","title":"Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes","year":2007,"lang":"en","type":"article","venue":"Virology Journal","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":197,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria; Trent University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Iridovirus; Ranavirus; Biology; ORFS; Genome; Genetics; Clade; Phylogenetic tree; Gene; Evolutionary biology; Computational biology; Open reading frame; Peptide sequence","authors":[{"name":"Heather E. Eaton","is_ca":true},{"name":"Julie Metcalf","is_ca":true},{"name":"Emily Penny","is_ca":true},{"name":"Vasily Tcherepanov","is_ca":true},{"name":"Chris Upton","is_ca":true},{"name":"Craig R. Brunetti","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03046741128262549,"gpt":0.2876869922664259,"spread":0.2572195809838004,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009579361,0.0001664993,0.0004825253,0.000229136,0.0004276588,0.00001124799,0.0003903634,0.0001491883,0.0001154298],"category_scores_gemma":[0.00004440439,0.00009278469,0.0002436132,0.0004202666,0.0008464772,0.00004402717,0.0002045258,0.000430855,0.00001331188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001877417,"about_ca_system_score_gemma":0.00004128394,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004914256,"about_ca_topic_score_gemma":0.0001540711,"domain_scores_codex":[0.9986476,0.0002723415,0.000554021,0.0001808243,0.00004607117,0.0002990948],"domain_scores_gemma":[0.998621,0.0003320605,0.0006886927,0.0002369782,0.00009950982,0.00002174376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003412244,0.0000371782,0.07439999,0.000008672635,0.003795254,0.000007790721,0.003377175,0.0003046499,0.911704,0.001032367,0.003281286,0.001710404],"study_design_scores_gemma":[0.001318297,0.0001619866,0.957524,0.00002100086,0.003525034,0.0001571508,0.007693547,0.00006837678,0.01918153,0.0001739102,0.009986759,0.0001884329],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821463,0.01623936,0.0002610798,0.0002295997,0.0002785378,0.0001310722,0.00006693732,0.000006921053,0.0006402055],"genre_scores_gemma":[0.9990487,0.0001647002,0.00008696321,0.0004670525,0.00002414155,0.000001397363,0.0000281566,0.00000730698,0.0001715751],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8925225,"threshold_uncertainty_score":0.378365,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981755124","doi":"10.1016/s0165-2427(01)00328-2","title":"The production and bioactivity of rainbow trout (Oncorhynchus mykiss) recombinant IL-1β","year":2001,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":187,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Rainbow trout; Trout; Biology; BETA (programming language); Polyclonal antibodies; Molecular biology; Internal medicine; Endocrinology; Antibody; Immunology; Fishery; Fish <Actinopterygii>; Medicine","authors":[{"name":"Suhee Hong","is_ca":false},{"name":"Jun Zou","is_ca":false},{"name":"Mireille Crampe","is_ca":false},{"name":"Scott Peddie","is_ca":false},{"name":"Giuseppe Scapigliati","is_ca":false},{"name":"Niels C. Bols","is_ca":true},{"name":"Charles Cunningham","is_ca":false},{"name":"Christopher J. Secombes","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01353656006391522,"gpt":0.2359373892356996,"spread":0.2224008291717844,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006055122,0.0003341611,0.0004973222,0.0001609915,0.0007778034,0.00002182117,0.0002971147,0.0003905783,0.00006785995],"category_scores_gemma":[0.0002364012,0.0002453548,0.00009799501,0.0001837054,0.002175573,0.0001885655,0.0004329503,0.0004467923,0.00005586719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002752179,"about_ca_system_score_gemma":0.00003161271,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005522565,"about_ca_topic_score_gemma":0.00001302584,"domain_scores_codex":[0.9977123,0.0006750975,0.0004725834,0.0005547963,0.0000279625,0.0005572518],"domain_scores_gemma":[0.998817,0.0002138309,0.0002953849,0.0005683383,0.00008343663,0.00002202808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00204594,0.0002000662,0.002148033,0.0000273231,0.0003319415,0.00006093547,0.0006125705,1.394879e-7,0.9543548,0.00187947,0.0006808189,0.03765797],"study_design_scores_gemma":[0.005185961,0.008869039,0.3558482,0.0002272162,0.0005680144,0.0241855,0.00552609,0.000003788211,0.1145346,0.002565116,0.4811934,0.001293168],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9641029,0.03190579,0.00003270471,0.001531728,0.001351374,0.0004332613,0.00001954055,0.00007591757,0.0005467872],"genre_scores_gemma":[0.9814913,0.01316752,0.00004419382,0.00007839603,0.00002788074,0.00005425,0.00005331331,0.00002175127,0.005061395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8398202,"threshold_uncertainty_score":0.9999999,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2143506243","doi":"10.1139/f02-066","title":"Resistance to three pathogens in the endangered winter-run chinook salmon (<i>Oncorhynchus tshawytscha</i>): effects of inbreeding and major histocompatibility complex genotypes","year":2002,"lang":"en","type":"article","venue":"Canadian Journal of Fisheries and Aquatic Sciences","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":184,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"National Marine Fisheries Service; University of California, Davis; U.S. Fish and Wildlife Service","keywords":"Biology; Oncorhynchus; Infectious hematopoietic necrosis virus; Chinook wind; Inbreeding depression; Genetics; Zoology; Inbreeding; Rainbow trout; Population; Fishery; Fish <Actinopterygii>","authors":[{"name":"Kristen D. Arkush","is_ca":false},{"name":"Alan R. Giese","is_ca":false},{"name":"Holly L. Mendonca","is_ca":false},{"name":"Anne M McBride","is_ca":false},{"name":"Gary D. Marty","is_ca":false},{"name":"Philip W. Hedrick","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02067972294134664,"gpt":0.2149658475887992,"spread":0.1942861246474526,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000467172,0.0001184381,0.0002550398,0.000158188,0.0002738413,0.0000605666,0.000301612,0.00004492241,0.0001196245],"category_scores_gemma":[0.000175562,0.00007789049,0.000044831,0.0002294159,0.000709336,0.0001240841,0.00002538565,0.0001145736,0.000002427296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000304822,"about_ca_system_score_gemma":0.00005962987,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001535852,"about_ca_topic_score_gemma":0.06664492,"domain_scores_codex":[0.9991333,0.0001041534,0.0003016594,0.0001641614,0.00005382915,0.0002429028],"domain_scores_gemma":[0.9994544,0.0001652562,0.0001704719,0.0001035047,0.00002797378,0.00007832757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002372415,0.0001884531,0.581332,0.0005637613,0.0002709911,0.0002413811,0.07263878,0.000004637406,0.1950417,0.002021091,0.08398183,0.06347816],"study_design_scores_gemma":[0.001511247,0.0009578724,0.9407585,0.000500844,0.0001488729,0.0001142817,0.006088979,0.00004134113,0.001972135,0.001470162,0.04606002,0.0003757208],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879486,0.008430005,0.00006572848,0.002122893,0.0001567213,0.0002679345,0.00001456401,0.000002247758,0.0009913063],"genre_scores_gemma":[0.9990721,0.00003748583,0.0003119783,0.0003888665,0.0000197022,0.000004210466,0.000001727716,0.000003295909,0.0001606361],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3594265,"threshold_uncertainty_score":0.9503864,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2911874711","doi":"10.1016/j.coviro.2018.12.008","title":"Emerging viruses in aquaculture","year":2019,"lang":"en","type":"review","venue":"Current Opinion in Virology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":184,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Aquaculture; Biology; Virus; Aquatic animal; Virology; Fishery; Fish <Actinopterygii>","authors":[{"name":"Frederick SB Kibenge","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1029847148591696,"gpt":0.3952720215207851,"spread":0.2922873066616155,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002801795,0.0006748278,0.002029288,0.0008094684,0.00005591957,0.00001844361,0.0006821147,0.001068999,0.0007832726],"category_scores_gemma":[0.00005573697,0.0005469625,0.0004672091,0.0005400974,0.0001574153,0.00009614456,0.0003923599,0.001480345,0.004660454],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001535948,"about_ca_system_score_gemma":0.0001288842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002365992,"about_ca_topic_score_gemma":0.00002274487,"domain_scores_codex":[0.9966103,0.0006774449,0.001017597,0.0009175016,0.00003931578,0.0007377689],"domain_scores_gemma":[0.998897,0.000128839,0.0004178081,0.0005081999,0.0000220494,0.0000261575],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004899269,0.0004258122,0.0002722464,0.01819298,0.0002276776,0.000005046095,0.0002939922,0.000002445792,0.00004255438,0.002316509,0.0513095,0.9268622],"study_design_scores_gemma":[0.001023583,0.00004348774,0.00009375871,0.006947749,0.0001833073,0.00001872157,0.00005055587,4.107519e-7,9.989407e-7,0.00003678393,0.9910753,0.0005253156],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00003006488,0.9846663,0.000008410919,0.00003747237,0.01335632,0.00124217,0.0001272425,0.00005947518,0.0004725617],"genre_scores_gemma":[0.00002122881,0.9960039,0.000004288526,0.00005391283,0.0001635546,0.0001954911,0.002857144,0.00005061663,0.0006498143],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9397658,"threshold_uncertainty_score":0.9996982,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2051496908","doi":"10.3354/dao040009","title":"Use of RT-PCR for diagnosis of infectious salmon anaemia virus (ISAV) in carrier sea trout Salmo trutta after experimental infection","year":2000,"lang":"en","type":"article","venue":"Diseases of Aquatic Organisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":182,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Salmo; Biology; Trout; Virus; Outbreak; Virology; Salmonidae; Brown trout; Rainbow trout; Polymerase chain reaction; Fishery; Fish <Actinopterygii>","authors":[{"name":"M Devold","is_ca":false},{"name":"Bjørn Krossøy","is_ca":false},{"name":"Vidar Aspehaug","is_ca":false},{"name":"Are Nylund","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01049604824451968,"gpt":0.2383841675221177,"spread":0.227888119277598,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007563974,0.0002698959,0.0005480351,0.0002053764,0.00005085097,0.00001192354,0.000143492,0.0001902449,0.003010121],"category_scores_gemma":[0.0001116456,0.0002535974,0.0002834314,0.000263855,0.0002545324,0.0002174349,0.00005732859,0.00008723948,0.00003627457],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007334262,"about_ca_system_score_gemma":0.00006244134,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001534563,"about_ca_topic_score_gemma":0.0002373777,"domain_scores_codex":[0.9985551,0.0001342426,0.0006128105,0.0003330958,0.00006936119,0.0002954276],"domain_scores_gemma":[0.9991416,0.000163884,0.0002484476,0.000340176,0.00005921598,0.00004670944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00195698,0.002812684,0.7243185,0.000348154,0.0005965606,0.000007339601,0.001735392,0.0000564334,0.260256,0.0001338007,0.002497688,0.005280439],"study_design_scores_gemma":[0.003692226,0.0007999104,0.2845551,0.0001653911,0.0006813495,0.000002978388,0.0003387775,0.00001524685,0.707559,0.0001225505,0.001684447,0.000382943],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954679,0.002339155,0.000042037,0.00002017402,0.0001878548,0.0008508909,0.0009778371,0.00003659882,0.00007756173],"genre_scores_gemma":[0.9986905,0.0001712738,0.00004955391,0.00007488678,0.00002043422,0.0001680142,0.0004888549,0.00003671211,0.0002997708],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4473031,"threshold_uncertainty_score":0.9999917,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090600203","doi":"10.1016/j.fsi.2008.01.012","title":"The immune and stress responses of Atlantic cod to long-term increases in water temperature","year":2008,"lang":"en","type":"article","venue":"Fish & Shellfish Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":181,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo; Memorial University of Newfoundland","funders":"","keywords":"Biology; Immune system; Gene expression; Internal medicine; Endocrinology; Antibody; Atlantic cod; Andrology; Molecular biology; Gene; Animal science; Immunology; Biochemistry; Fish <Actinopterygii>; Fishery","authors":[{"name":"Juan C. Pérez-Casanova","is_ca":true},{"name":"Marlies Rise","is_ca":true},{"name":"Brian Dixon","is_ca":true},{"name":"Luis O.B. Afonso","is_ca":true},{"name":"J. Camille Hall","is_ca":true},{"name":"Steven Johnson","is_ca":true},{"name":"A. Kurt Gamperl","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007104795697413164,"gpt":0.2130539694782266,"spread":0.2059491737808135,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002427165,0.0002909053,0.0004799701,0.0002056928,0.0004141365,0.0000254548,0.0005086912,0.0003234313,0.0002270934],"category_scores_gemma":[0.0001448211,0.0001864916,0.0001014275,0.0002057757,0.0007548741,0.00009370023,0.0004771263,0.000376601,0.000176524],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003118752,"about_ca_system_score_gemma":0.00004317066,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002948293,"about_ca_topic_score_gemma":0.0004165256,"domain_scores_codex":[0.9980145,0.0004061913,0.000510769,0.0004089907,0.00004184729,0.0006177785],"domain_scores_gemma":[0.9990099,0.0002420494,0.0001026681,0.0005201248,0.00009575918,0.00002947814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001762414,0.0002919845,0.2071023,0.00004468752,0.0003902524,0.000130388,0.0008334853,8.375324e-7,0.7819918,0.0001745885,0.006863191,0.0004140866],"study_design_scores_gemma":[0.001690204,0.0002351708,0.7658633,0.00009815754,0.00005642467,0.0002523263,0.0003121231,6.803857e-8,0.2198191,0.00001545389,0.01139971,0.0002579271],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9878302,0.00978169,0.000001246334,0.001247287,0.0003008292,0.0004974041,0.0001109258,0.00004754219,0.0001828848],"genre_scores_gemma":[0.991399,0.002647847,0.000006558857,0.0002891557,0.00002167533,0.00004376492,0.0006576381,0.00002388582,0.004910404],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5621727,"threshold_uncertainty_score":0.7604905,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1992468375","doi":"10.3354/dao076099","title":"Mortality event in freshwater drum Aplodinotus grunniens from Lake Ontario, Canada, associated with viral haemorrhagic septicemia virus, Type IV","year":2007,"lang":"en","type":"article","venue":"Diseases of Aquatic Organisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":180,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Prince Edward Island; Ministry of Natural Resources and Forestry; University of Guelph","funders":"University of Guelph; Ministry of Natural Resources","keywords":"Biology; Virology; Virus; Polymerase chain reaction; Reoviridae; Sequence analysis; Veterinary medicine; Gene; Rotavirus; Genetics","authors":[{"name":"J S Lumsden","is_ca":true},{"name":"Brian J. Morrison","is_ca":true},{"name":"Carmencita Yason","is_ca":true},{"name":"Samantha Russell","is_ca":true},{"name":"Karrie Young","is_ca":true},{"name":"A Yazdanpanah","is_ca":true},{"name":"P Huber","is_ca":true},{"name":"Lowia Al-Hussinee","is_ca":true},{"name":"David M. Stone","is_ca":false},{"name":"K Way","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007146795476545581,"gpt":0.2094724849319783,"spread":0.2023256894554327,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000184365,0.0003462263,0.0005154109,0.00009636836,0.0001075154,0.00001943866,0.0003331658,0.0001838452,0.006043369],"category_scores_gemma":[0.00009836141,0.0002846078,0.0001009327,0.0002452072,0.0001951563,0.0001057751,0.0001193872,0.0002547925,0.0001272761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003936301,"about_ca_system_score_gemma":0.0006494689,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6762264,"about_ca_topic_score_gemma":0.9969774,"domain_scores_codex":[0.9981196,0.0001102875,0.0005515456,0.0004535849,0.0001532071,0.0006117784],"domain_scores_gemma":[0.9990039,0.0001181622,0.0002707618,0.0004267795,0.00008147864,0.00009892778],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000892599,0.001391119,0.9052783,0.00004613852,0.001453403,0.0003915803,0.001626264,0.0000264079,0.07128768,0.0001751688,0.01718532,0.0002460851],"study_design_scores_gemma":[0.002815867,0.000199617,0.9711751,0.0001094831,0.0008757247,0.000002055651,0.0005703086,0.000009694772,0.02064889,0.0002248114,0.002866562,0.0005018815],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996981,0.0005250109,0.00007330348,0.00006910747,0.000398615,0.0004470873,0.001090928,0.00005269397,0.0003622257],"genre_scores_gemma":[0.9924005,0.000004568281,0.00004560592,0.0004262375,0.00002263368,0.000005901632,0.004504945,0.0000350653,0.002554544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3207511,"threshold_uncertainty_score":0.9999606,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2086169311","doi":"10.1016/j.ygcen.2003.09.016","title":"Effects of cortisol on food intake, growth, and forebrain neuropeptide Y and corticotropin-releasing factor gene expression in goldfish","year":2003,"lang":"en","type":"article","venue":"General and Comparative Endocrinology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":179,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Internal medicine; Endocrinology; Biology; Neuropeptide Y receptor; Cerebrum; Forebrain; Neuropeptide; Glucocorticoid; Corticotropin-releasing hormone; Hydrocortisone; Hypothalamus; Central nervous system; Medicine","authors":[{"name":"Nicholas J. Bernier","is_ca":true},{"name":"Nicole Bedard","is_ca":true},{"name":"Richard Peter","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0197541725595213,"gpt":0.2338298367591335,"spread":0.2140756641996122,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000007732481,0.0002237816,0.0004135996,0.0001178664,0.00009424819,0.00001133426,0.00006514569,0.00008362291,0.00001851317],"category_scores_gemma":[0.00003403325,0.0001808802,0.00003239795,0.0000711676,0.0003185894,0.00005753216,0.0001009289,0.0001840998,0.000005118751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009864734,"about_ca_system_score_gemma":0.00001106301,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001695444,"about_ca_topic_score_gemma":0.0000213224,"domain_scores_codex":[0.9987245,0.0003035013,0.0002462745,0.0003782137,0.0000214825,0.0003259896],"domain_scores_gemma":[0.9996338,0.0001069278,0.0001076972,0.00009475373,0.00002282521,0.00003393673],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002018221,0.0001147603,0.01225702,0.00005933277,0.00008152025,0.00001745487,0.0005318802,0.000001385817,0.9704304,0.01447716,0.0003183143,0.001508946],"study_design_scores_gemma":[0.003038914,0.001080695,0.2054707,0.00004842967,0.00003864122,0.00006699865,0.0001914944,0.000003099621,0.7876444,0.0003176142,0.001876967,0.0002220444],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919528,0.0068776,0.00009935725,0.00005059202,0.000152767,0.0003758568,0.00001731977,0.00001862439,0.0004551102],"genre_scores_gemma":[0.9979104,0.001359856,0.0001694525,0.0002148217,0.00001200243,0.0000233914,0.00002426685,0.000008205843,0.0002775682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1932137,"threshold_uncertainty_score":0.737608,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2945868191","doi":"10.1080/21505594.2019.1621648","title":"<i>Edwardsiella piscicida</i>: A versatile emerging pathogen of fish","year":2019,"lang":"en","type":"review","venue":"Virulence","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":179,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Trinity Western University; Western University","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Biology; Virulence; Microbiology; Pathogen; Resistome; Aquaculture; Bacteria; Human pathogen; Antibiotics; Fish <Actinopterygii>; Antibiotic resistance; Gene; Fishery","authors":[{"name":"Ka Yin Leung","is_ca":false},{"name":"Qiyao Wang","is_ca":false},{"name":"Zhiyun Yang","is_ca":false},{"name":"Bupe A. Siame","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03388151985653918,"gpt":0.2975423631688493,"spread":0.2636608433123101,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001939821,0.0004579206,0.001442285,0.0001929004,0.00008016555,0.00001481387,0.0007317652,0.0004652956,0.00113238],"category_scores_gemma":[0.00004431349,0.000368201,0.0006552057,0.0003017802,0.0001587908,0.00007045616,0.0003462512,0.0003677541,0.002349738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000405773,"about_ca_system_score_gemma":0.0001575834,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003085424,"about_ca_topic_score_gemma":0.000005016739,"domain_scores_codex":[0.9981492,0.0002068209,0.0006001311,0.0005662748,0.00005426834,0.0004232742],"domain_scores_gemma":[0.9986065,0.00009576907,0.0005442689,0.0006725791,0.00005598578,0.00002486495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002253341,0.0001227273,0.000006707558,0.01859189,0.0008646237,0.0000143119,0.0002541572,7.251809e-7,0.004139339,0.0003308845,0.1040063,0.8716458],"study_design_scores_gemma":[0.0002582474,0.00004565706,0.000001886273,0.004942421,0.001303245,0.00001259349,0.00006033605,2.159274e-7,0.0002173439,0.000004321907,0.9927754,0.00037838],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00002526478,0.9909526,0.00002959706,0.00001667107,0.0009030478,0.0007796401,0.0009056611,0.00006290573,0.006324637],"genre_scores_gemma":[0.00005494959,0.9899199,0.00002522862,0.0001482836,0.00004189909,0.00003647681,0.001130963,0.00004636731,0.00859596],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.888769,"threshold_uncertainty_score":0.999877,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2800545870","doi":"10.3389/fimmu.2018.01105","title":"Mechanisms of Fish Macrophage Antimicrobial Immunity","year":2018,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":176,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; China Scholarship Council; George Washington University","keywords":"Biology; Macrophage; Immunity; Fish <Actinopterygii>; Aquaculture; Immune system; Antimicrobial; Macrophage polarization; Innate immune system; Overcrowding; Immunology; Zoology; Ecology; Microbiology; Fishery; Genetics","authors":[{"name":"Leon Grayfer","is_ca":false},{"name":"Barış Kerimoğlu","is_ca":false},{"name":"Amulya Yaparla","is_ca":false},{"name":"Jordan W. Hodgkinson","is_ca":true},{"name":"Jiasong Xie","is_ca":true},{"name":"Miodrag Belosevic","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01377003463470008,"gpt":0.2521755115617313,"spread":0.2384054769270313,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004683973,0.0008151155,0.003251541,0.0009944498,0.0001620571,0.00001831101,0.001606294,0.001938001,0.0007096055],"category_scores_gemma":[0.00009777481,0.0007330923,0.000882687,0.0006710649,0.001153612,0.00009751963,0.0008056337,0.001229156,0.0006193073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002076831,"about_ca_system_score_gemma":0.0002438535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008573959,"about_ca_topic_score_gemma":0.00002160944,"domain_scores_codex":[0.9958726,0.001029828,0.00135958,0.0007986438,0.00004270756,0.0008966032],"domain_scores_gemma":[0.9977592,0.00007900219,0.0009230704,0.001113585,0.0001004677,0.00002463398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003043034,0.0007687657,0.00001107303,0.008650668,0.005133889,0.0000766559,0.0003051152,1.441881e-7,0.005170457,0.001577202,0.5457353,0.4322664],"study_design_scores_gemma":[0.001170044,0.0001600627,0.0000145208,0.003192663,0.0009632942,0.00007782112,0.0001494607,9.225163e-8,0.001162518,0.000285886,0.9921973,0.0006263862],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006910149,0.9879221,0.001038814,0.00002404996,0.007922566,0.00112179,0.0005865566,0.00008884961,0.001226122],"genre_scores_gemma":[0.00007458192,0.990683,0.0008985664,0.0001221168,0.00004178336,0.00007333385,0.002762286,0.00009509768,0.005249238],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.4464619,"threshold_uncertainty_score":0.999512,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154764208","doi":"10.1152/physiolgenomics.00036.2004","title":"Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to<i>Piscirickettsia salmonis</i>infection","year":2004,"lang":"en","type":"article","venue":"Physiological Genomics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":174,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; University of Victoria; Fisheries and Oceans Canada","funders":"","keywords":"Biology; Immune system; Infectious hematopoietic necrosis virus; Macrophage; Downregulation and upregulation; Kidney; Innate immune system; Microarray analysis techniques; Haematopoiesis; Pathogen; Microbiology; Virology; Immunology; Gene expression; Gene; Cell biology; Genetics; Stem cell","authors":[{"name":"Matthew L. Rise","is_ca":false},{"name":"Simon R. M. Jones","is_ca":true},{"name":"Gordon D. Brown","is_ca":true},{"name":"Kristian R. von Schalburg","is_ca":true},{"name":"William S. Davidson","is_ca":true},{"name":"Ben F. Koop","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0209252010700375,"gpt":0.2898031055581188,"spread":0.2688779044880814,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002486451,0.0003030648,0.000457776,0.0001674961,0.0001587056,0.00003024457,0.0002356468,0.0002367507,0.000101362],"category_scores_gemma":[0.0001444543,0.0002441056,0.0002194772,0.0003159794,0.0003339201,0.00005683497,0.0002642177,0.0001742654,0.0002494513],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007954496,"about_ca_system_score_gemma":0.00004827262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001490897,"about_ca_topic_score_gemma":0.000003225085,"domain_scores_codex":[0.9983541,0.0002558651,0.000393935,0.0005515012,0.00004155708,0.0004030739],"domain_scores_gemma":[0.9992809,0.00004982819,0.0001686915,0.0003367835,0.00005721043,0.0001065831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001005238,0.0002008123,0.0004807709,0.00007041512,0.0003585698,0.00002454061,0.0002105769,0.0001171138,0.9958571,0.0001864895,0.001342471,0.0001459077],"study_design_scores_gemma":[0.001803682,0.0004282384,0.08739013,0.00007576294,0.0003307365,0.00004843533,0.0001763595,0.000001574412,0.9035233,0.001102563,0.0046459,0.0004733751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965867,0.001270339,0.0008680423,0.0004349648,0.000185203,0.0004407319,0.00005297121,0.00007205067,0.00008899296],"genre_scores_gemma":[0.9983863,0.0001504144,0.0004417395,0.000656814,0.00001639512,0.00001624352,0.0002038012,0.00002165542,0.000106626],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09233385,"threshold_uncertainty_score":0.9954339,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2594568399","doi":"10.1038/srep43465","title":"Parasitism perturbs the mucosal microbiome of Atlantic Salmon","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":171,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Cooke Aquaculture (Canada); Université Laval; Fisheries and Oceans Canada","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Salmo; Vibrio; Mucus; Microbiome; Lepeophtheirus; Zoology; Context (archaeology); Host (biology); Ecology; Beta diversity; Parasitism; Colonisation; Flavobacterium; Species richness; Microbiology; Fish <Actinopterygii>; Fishery; Bacteria; Pseudomonas; Genetics","authors":[{"name":"Martin Llewellyn","is_ca":false},{"name":"S. Leadbeater","is_ca":true},{"name":"Carolina Falcón García","is_ca":true},{"name":"François‐Étienne Sylvain","is_ca":true},{"name":"María Custodio","is_ca":false},{"name":"Keng Pee Ang","is_ca":true},{"name":"Frank C. Powell","is_ca":true},{"name":"Gary R. Carvalho","is_ca":false},{"name":"Simon Creer","is_ca":false},{"name":"J.M. Elliot","is_ca":true},{"name":"Nicolas Derôme","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01171733609334496,"gpt":0.2456585896411605,"spread":0.2339412535478156,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0007641343,0.0001631884,0.0002257049,0.00007954,0.001357925,0.0002311984,0.000591981,0.0001157109,0.0004932961],"category_scores_gemma":[0.0001293409,0.0001029677,0.0001809864,0.00008633871,0.001363132,0.0001467684,0.0002905738,0.0001355588,0.0003204192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001525949,"about_ca_system_score_gemma":0.00005837449,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001958637,"about_ca_topic_score_gemma":0.00005688256,"domain_scores_codex":[0.9986315,0.00006806504,0.000379783,0.0005200596,0.00006259287,0.0003380155],"domain_scores_gemma":[0.9975695,0.00002501457,0.0005804186,0.00169617,0.0001056107,0.00002328447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001594243,0.00007612265,0.009696334,0.0000243461,0.0001063267,0.0001026531,0.0002670719,4.77167e-7,0.8211091,0.0004708026,0.1672472,0.000883623],"study_design_scores_gemma":[0.0005094348,0.00003586115,0.06539682,0.00008282896,0.0002099435,0.0005834706,0.0002372789,0.000001544755,0.2296032,0.001297394,0.7017246,0.0003175052],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983252,0.00142598,0.00002219835,0.0008225871,0.009331725,0.0003796085,0.00001249893,0.00004456608,0.004708778],"genre_scores_gemma":[0.9666502,0.00001011306,0.00002187978,0.00004331423,0.00003118178,0.000008451401,0.0002564978,0.00001067728,0.03296762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5915059,"threshold_uncertainty_score":0.9999422,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149108247","doi":"10.1186/1746-6148-4-28","title":"First detection, isolation and molecular characterization of infectious salmon anaemia virus associated with clinical disease in farmed Atlantic salmon (Salmo salar) in Chile","year":2008,"lang":"en","type":"article","venue":"BMC Veterinary Research","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":170,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"Atlantic Veterinary College","keywords":"Salmo; Isolation (microbiology); Biology; Virology; Virus isolation; Infectious disease (medical specialty); Fishery; Aquaculture; Disease; Virus; Zoology; Veterinary medicine; Fish <Actinopterygii>; Microbiology; Medicine; Pathology","authors":[{"name":"Marcos Godoy","is_ca":false},{"name":"Alejandra Aedo","is_ca":false},{"name":"Molly JT Kibenge","is_ca":true},{"name":"David B. Groman","is_ca":true},{"name":"Carmencita Yason","is_ca":true},{"name":"Horts Grothusen","is_ca":false},{"name":"Angelica Lisperguer","is_ca":true},{"name":"Marlene Calbucura","is_ca":false},{"name":"Fernando Avendaño","is_ca":false},{"name":"Marcelo Imilán","is_ca":false},{"name":"Miguel Jarpa","is_ca":false},{"name":"Frederick SB Kibenge","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04469579255064249,"gpt":0.3144640697635621,"spread":0.2697682772129196,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006932335,0.0001711551,0.0003069887,0.000439971,0.0001736938,0.00001440842,0.0001327999,0.0002187916,0.00004197637],"category_scores_gemma":[0.0002899263,0.0001584697,0.00005696549,0.0006479252,0.0003356786,0.0001564032,0.0001443128,0.0004198398,0.00002071632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009578712,"about_ca_system_score_gemma":0.00008268328,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003775897,"about_ca_topic_score_gemma":0.0007876701,"domain_scores_codex":[0.9977632,0.0008907834,0.0004426173,0.0004249124,0.00009530321,0.0003832374],"domain_scores_gemma":[0.9993053,0.0001650709,0.0001326122,0.0002308708,0.0001144942,0.00005167296],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001679269,0.0004636439,0.60291,0.00008014995,0.00004563886,0.0001493333,0.0002095323,0.00001467164,0.3942305,0.00001022932,0.00001543177,0.0001915705],"study_design_scores_gemma":[0.002340475,0.0008728749,0.9938319,0.000158294,0.00002187167,0.00003028227,0.00004114576,0.0002221751,0.001919873,0.00001227588,0.0003760067,0.0001727726],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985867,0.0002690869,0.000169751,0.00004113018,0.00007367132,0.0007360907,0.00002546069,0.00003835692,0.00005978955],"genre_scores_gemma":[0.9989388,0.0003287026,0.00001002275,0.00001694244,0.00001445093,0.00006278011,0.0004776171,0.00002310195,0.0001275634],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3923107,"threshold_uncertainty_score":0.6462205,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999727030","doi":"10.1016/s0145-305x(01)00029-5","title":"Evolution of effectors and receptors of innate immunity","year":2001,"lang":"en","type":"review","venue":"Developmental & Comparative Immunology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":170,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Innate immune system; Immune system; Acquired immune system; Classical complement pathway; Effector; Innate lymphoid cell; Receptor; Chemokine; CCL18; Immunology; Complement receptor; Complement system; Cell biology; Genetics","authors":[{"name":"Brad G. Magor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03557818889242032,"gpt":0.3028171317267748,"spread":0.2672389428343545,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002615665,0.0006165144,0.002610073,0.0005310907,0.0001541397,0.000006609571,0.0004878083,0.0006281144,0.0004788328],"category_scores_gemma":[0.00003882938,0.0005105862,0.0003231267,0.0006223139,0.00117463,0.00008968242,0.0005684606,0.0005756553,0.0002333274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002777098,"about_ca_system_score_gemma":0.0002518582,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001645818,"about_ca_topic_score_gemma":0.00002437928,"domain_scores_codex":[0.9970999,0.0008868846,0.001096785,0.0004716186,0.00004437979,0.0004004068],"domain_scores_gemma":[0.9983429,0.000248519,0.0009853739,0.000289053,0.0001122105,0.00002199295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007960543,0.001460549,0.001886433,0.01383818,0.01801307,0.00001708222,0.005308697,5.873934e-7,0.03165377,0.007467022,0.01176257,0.907796],"study_design_scores_gemma":[0.0009519849,0.0002263978,0.001516861,0.002803508,0.0006981684,0.0001107828,0.001053324,5.942733e-8,0.001924741,0.0000339934,0.9901667,0.000513489],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01713392,0.9789267,0.00002462574,0.000002764821,0.0008813437,0.00100056,0.0000928232,0.00003990335,0.00189736],"genre_scores_gemma":[0.01876336,0.9778935,0.0001232801,0.000004854473,0.000009987683,0.00007479543,0.001481884,0.00003016449,0.001618136],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9784041,"threshold_uncertainty_score":0.9997346,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}