{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":658,"total_is_capped":false,"direct_labels_cover":4,"predictions_cover":658,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"69aff517a7be","filters":{"topic":"Chromatin Remodeling and Cancer"}},"results":[{"id":"W2034852369","doi":"10.1056/nejmoa1008433","title":"<i>ARID1A</i> Mutations in Endometriosis-Associated Ovarian Carcinomas","year":2010,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1702,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Université de Montréal; Hôpital Notre-Dame; McGill University Health Centre; Canada's Michael Smith Genome Sciences Centre; Centre Hospitalier de l’Université de Montréal; University of British Columbia; Simon Fraser University; BC Cancer Agency","funders":"Medical Research and Materiel Command; National Cancer Institute; National Institutes of Health; Cancer Council Tasmania; National Health and Medical Research Council; Sanofi; University of British Columbia; Ovarian Cancer Canada; Michael Smith Health Research BC; Medical Research Council; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre; Genome Canada","keywords":"ARID1A; Clear cell carcinoma; Clear cell; Cancer research; Ovarian cancer; Serous fluid; Endometriosis; Carcinoma; Medicine; Somatic cell; Tumor suppressor gene; Pathology; Biology; Mutation; Cancer; Carcinogenesis; Internal medicine; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01053513983448155,"gpt":0.2611692867352993,"spread":0.2506341469008177,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006676732,0.00008430787,0.0001913825,0.0001273592,0.00002716226,0.000006151826,0.0001256465,0.0000921786,0.00006228205],"category_scores_gemma":[0.001346041,0.00006267664,0.0000489864,0.0001699304,0.00004709579,0.000003535308,0.00001445652,0.0002985908,8.896042e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001443039,"about_ca_system_score_gemma":0.0001903054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002103259,"about_ca_topic_score_gemma":0.0007154855,"domain_scores_codex":[0.999204,0.00004862054,0.0003420882,0.00009216787,0.000182954,0.0001302066],"domain_scores_gemma":[0.999366,0.00007416719,0.0001829985,0.0001193433,0.0001296751,0.0001277831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001673377,0.00007168273,0.01625043,0.000007634692,0.00006502746,0.00004216748,0.0004908488,0.0002230472,0.9288473,0.00004787091,0.005385241,0.04840142],"study_design_scores_gemma":[0.271481,0.005896317,0.1284619,0.0007600876,0.000510704,0.003281424,0.0009603956,0.001300592,0.1662319,0.004440156,0.4156669,0.001008694],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948555,0.0008945926,0.0005578331,0.001806797,0.0006924759,0.00004242183,0.000002557465,0.000002837312,0.001145027],"genre_scores_gemma":[0.9966452,0.0001698408,0.0005381847,0.0002898727,0.002107188,7.120573e-7,0.00001899452,0.000009878064,0.0002201983],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7626154,"threshold_uncertainty_score":0.2555879,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974625077","doi":"10.1038/nature11213","title":"Novel mutations target distinct subgroups of medulloblastoma","year":2012,"lang":"en","type":"article","venue":"Nature","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":853,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"National Cancer Institute; National Institutes of Health; American Lebanese Syrian Associated Charities; CERN","keywords":"Medulloblastoma; Biology; Wnt signaling pathway; Carcinogenesis; Epigenetics; Genetics; Gene; Cancer research; Mutation; Lineage (genetic); Genome","retraction":null,"screen_n_in":null,"score":{"opus":0.006626444582552253,"gpt":0.2615397797656388,"spread":0.2549133351830866,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007627645,0.00007079953,0.00007220456,0.0000148829,0.00002990536,0.000003254419,0.00008380793,0.0004367354,0.00003446438],"category_scores_gemma":[0.00007208618,0.00006188974,0.00005822951,0.00005724573,0.0000329075,0.000002282281,0.00002973982,0.000242663,0.000003724788],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007249462,"about_ca_system_score_gemma":0.0000298027,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006352485,"about_ca_topic_score_gemma":0.000008882464,"domain_scores_codex":[0.9995613,0.000009186329,0.00009652995,0.0001018934,0.00009633587,0.0001348049],"domain_scores_gemma":[0.999674,0.000006727198,0.00004929164,0.0001577852,0.0000633521,0.00004884047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002676398,0.0001133651,0.006394536,0.00002913642,0.00003756704,1.639261e-7,0.00009002366,0.0001114157,0.987253,0.0003655484,0.004678402,0.0009000517],"study_design_scores_gemma":[0.0007939321,0.00011572,0.03884571,0.00003122847,0.00004136073,0.00004222628,0.0001200319,0.0004621317,0.8769854,0.000169572,0.0820974,0.0002952736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897082,0.003155014,0.004549388,0.0001085687,0.0002830128,0.00005422161,0.00007011305,0.000009937258,0.002061523],"genre_scores_gemma":[0.9946418,0.000009791014,0.004366432,0.0001498064,0.000338459,0.000005160731,0.0001658942,0.00001118707,0.000311474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1102676,"threshold_uncertainty_score":0.3368503,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979855662","doi":"10.1038/nature11329","title":"Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations","year":2012,"lang":"en","type":"article","venue":"Nature","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":769,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"National Cancer Institute; Canadian Institutes of Health Research; National Institute of Neurological Disorders and Stroke; National Human Genome Research Institute; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Howard Hughes Medical Institute","keywords":"Medulloblastoma; Biology; Exome sequencing; RNA Helicase A; Genetics; SMARCA4; Gene; Exome; Mutation; Wnt signaling pathway; Germline mutation; Cancer research; Histone; RNA; Helicase; Chromatin remodeling","retraction":null,"screen_n_in":null,"score":{"opus":0.01107315480253689,"gpt":0.2590846955059006,"spread":0.2480115407033637,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001107737,0.0001114342,0.00008576983,0.00002870401,0.00007889747,0.00001617233,0.0001081233,0.0005799104,0.00007342399],"category_scores_gemma":[0.00004490902,0.0001017007,0.00007061043,0.00008246901,0.00003048833,0.000006537387,0.00003130406,0.0004051081,0.00005443822],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005955961,"about_ca_system_score_gemma":0.00007516956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004510368,"about_ca_topic_score_gemma":0.00000865803,"domain_scores_codex":[0.9993124,0.00002488398,0.0001159731,0.0001636208,0.0001459973,0.0002371089],"domain_scores_gemma":[0.9995685,0.00001087398,0.00005127487,0.0002378796,0.00004848918,0.00008297984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003126949,0.00004822278,0.003131019,0.00005211024,0.00006772002,0.000002768699,0.0004445419,0.0009255414,0.9713658,0.0004454064,0.02048711,0.002998481],"study_design_scores_gemma":[0.001253048,0.0001617471,0.005911606,0.0001014056,0.00007155818,0.0001826174,0.001310379,0.0007286224,0.7004558,0.0006962435,0.2882912,0.0008357715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893378,0.006440706,0.0006742494,0.0001436762,0.0005544103,0.00008197447,0.00001468631,0.00002898724,0.002723496],"genre_scores_gemma":[0.9964805,0.00009139285,0.001698896,0.0004514428,0.0005546777,0.00000950302,0.0001056469,0.00002048899,0.0005874286],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.27091,"threshold_uncertainty_score":0.44728,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2286341552","doi":"10.1016/j.ccell.2016.02.001","title":"Atypical Teratoid/Rhabdoid Tumors Are Comprised of Three Epigenetic Subgroups with Distinct Enhancer Landscapes","year":2016,"lang":"en","type":"article","venue":"Cancer Cell","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":575,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; SickKids Foundation; University of Toronto; McGill University Health Centre","funders":"Heidelberger Zentrum für Personalisierte Onkologie Deutsches Krebsforschungszentrum In Der Helmholtz-Gemeinschaft; Deutsches Krebsforschungszentrum","keywords":"Atypical teratoid rhabdoid tumor; SMARCB1; Biology; Epigenetics; DNA methylation; Genetics; Enhancer; Chromatin; Epigenomics; Cancer research; Gene; Chromatin remodeling; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.007703200008490454,"gpt":0.2191053437738205,"spread":0.21140214376533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005466636,0.0001865737,0.0002313036,0.00001466023,0.00004676091,0.000009529937,0.0001899593,0.00009549709,0.0002366007],"category_scores_gemma":[0.000008877144,0.0001170811,0.00008093755,0.00005622554,0.0001044664,0.000003694008,0.00005412149,0.00005062574,0.000007634968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003862814,"about_ca_system_score_gemma":0.0001244312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006184008,"about_ca_topic_score_gemma":0.001237465,"domain_scores_codex":[0.9989879,0.00002574231,0.0002209427,0.0003649483,0.0001517198,0.0002488136],"domain_scores_gemma":[0.9992626,0.00001650894,0.0001570768,0.0003625517,0.0001112546,0.00008997045],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000531909,0.0000828034,0.0648047,0.0001155854,0.00005356273,0.00000374476,0.00004304011,0.0001591323,0.9254196,0.000006166975,0.0009701988,0.007809556],"study_design_scores_gemma":[0.001654021,0.0003136928,0.03053737,0.0002683602,0.0000383632,0.000004619794,0.0000405791,0.0001389834,0.9616455,0.00004290937,0.004992635,0.0003230119],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9857529,0.005186096,0.007794775,0.00007992073,0.0001032029,0.0001408194,0.00006929588,0.0000159016,0.0008570845],"genre_scores_gemma":[0.9982681,0.0005148797,0.0003127122,0.00005847306,0.000263477,0.0000526622,0.00001746742,0.00003278016,0.000479457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03622586,"threshold_uncertainty_score":0.4774429,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031496441","doi":"10.1073/pnas.0812889106","title":"An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":570,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institutes of Health","keywords":"Embryonic stem cell; Cell biology; Reprogramming; Induced pluripotent stem cell; Biology; Chromatin; Chromatin remodeling; Stem cell; Cellular differentiation; Cell; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02380742575053399,"gpt":0.2905317552444736,"spread":0.2667243294939396,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000689293,0.0001489667,0.0001789445,0.00006713866,0.0002650629,0.00004420832,0.0005910454,0.0001427935,0.000002831609],"category_scores_gemma":[0.00001126998,0.0001155667,0.0001022941,0.0001923754,0.0001975955,0.00003678596,0.00007670324,0.00009219812,2.906503e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002369798,"about_ca_system_score_gemma":0.00009538646,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003227768,"about_ca_topic_score_gemma":1.213761e-7,"domain_scores_codex":[0.9984932,0.000008757544,0.0003212067,0.0004179581,0.0005411524,0.0002177052],"domain_scores_gemma":[0.9992448,0.00001885121,0.0003916125,0.00002401545,0.0002631192,0.00005761919],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002394233,0.00006241769,0.00007658641,0.0001275316,0.0000089275,2.323464e-9,0.0001972652,0.0008576292,0.9966235,0.0003876406,0.0005236496,0.001110874],"study_design_scores_gemma":[0.0005020346,0.0002876042,0.0006456856,0.0000574824,0.0000307072,0.000007482525,0.0002968022,0.06303053,0.9310247,0.003723835,0.0002237538,0.0001693557],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996862,0.000938104,0.00006000468,0.0008695009,0.00002190694,0.0002391946,0.00002977721,0.00001373274,0.0009657856],"genre_scores_gemma":[0.9935651,0.0001650577,0.00551394,0.0003237127,0.0001624343,0.000007220334,0.00000156296,0.000008055932,0.0002529474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06559881,"threshold_uncertainty_score":0.4712672,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2059154675","doi":"10.1038/ng.2931","title":"Germline and somatic SMARCA4 mutations characterize small cell carcinoma of the ovary, hypercalcemic type","year":2014,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":500,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; Royal Victoria Hospital; Royal Victoria Regional Health Centre; Jewish General Hospital; McGill University; University of Ottawa; McGill University Health Centre; Princess Margaret Cancer Centre; Montreal Children's Hospital; McGill University and Génome Québec Innovation Centre; Children's Hospital of Eastern Ontario; McGill Genome Centre","funders":"National Heart, Lung, and Blood Institute","keywords":"SMARCA4; Biology; Germline; Germline mutation; Genetics; Somatic cell; Mutation; Exome sequencing; Cancer research; Epigenetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.007905791056056787,"gpt":0.2248158149058023,"spread":0.2169100238497455,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008339423,0.0001096549,0.0001104666,0.00001704524,0.00005423605,0.000009378843,0.0001651758,0.000236146,0.000006195701],"category_scores_gemma":[0.00005482092,0.00008292957,0.00005352934,0.00007237207,0.00006457285,8.309973e-7,0.00009279216,0.0001617287,0.000001388956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005936283,"about_ca_system_score_gemma":0.000062352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005416282,"about_ca_topic_score_gemma":0.00001246782,"domain_scores_codex":[0.9993927,0.00004252066,0.0001627052,0.0001864541,0.00009093544,0.0001247083],"domain_scores_gemma":[0.9994019,0.00001444122,0.00008467471,0.0003556622,0.0001026716,0.00004062975],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001705595,0.00002941992,0.01482726,0.00008744515,0.00001030086,1.939391e-7,0.00007391702,0.0001308559,0.9818585,0.000009214053,0.0002190815,0.002736746],"study_design_scores_gemma":[0.0008909359,0.0002683871,0.2081428,0.00003815434,0.00009917371,0.00003219764,0.00003744315,0.006171809,0.7747692,0.0002534983,0.009020988,0.0002753621],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956612,0.003170084,0.0003198799,0.0001121682,0.0002473891,0.0001110632,0.00001898231,0.000005215523,0.0003540249],"genre_scores_gemma":[0.9970089,0.0001741898,0.00192493,0.0003377159,0.0001990373,0.000003571679,0.00005886305,0.00001865328,0.0002741013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2070893,"threshold_uncertainty_score":0.3381769,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2028878627","doi":"10.1038/ng.2455","title":"Exome sequencing of serous endometrial tumors identifies recurrent somatic mutations in chromatin-remodeling and ubiquitin ligase complex genes","year":2012,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":435,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; ARID1A; Exome sequencing; Serous fluid; Somatic cell; Cancer research; Chromatin remodeling; Exome; Ubiquitin ligase; Endometrial cancer; Genetics; Epigenetics; Germline mutation; Gene; Mutation; Cancer; Ubiquitin","retraction":null,"screen_n_in":null,"score":{"opus":0.02949744419691128,"gpt":0.3044910946347438,"spread":0.2749936504378325,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003427679,0.0001874817,0.0002577048,0.0001437186,0.00006877137,0.00002498689,0.0001428303,0.0002485706,0.00001019284],"category_scores_gemma":[0.000180349,0.0001885327,0.00007293933,0.0001846812,0.00007629446,0.000008198572,0.0001089636,0.0002005705,0.000001645564],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000457463,"about_ca_system_score_gemma":0.000101002,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002207105,"about_ca_topic_score_gemma":0.00005949815,"domain_scores_codex":[0.9986634,0.0000744725,0.0004731256,0.0002556107,0.000222409,0.000310962],"domain_scores_gemma":[0.9993179,0.00004109689,0.0001843591,0.0002611098,0.0001020783,0.0000934394],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003537115,0.00006369753,0.005560001,0.0002368978,0.00003336639,0.000001618906,0.0007017996,0.003982484,0.9809393,0.00001374016,0.00007462034,0.008357149],"study_design_scores_gemma":[0.001858741,0.0002322058,0.01270388,0.0002490594,0.00009484508,0.0001078386,0.001216315,0.02345884,0.9585415,0.0004398373,0.0005572196,0.0005397974],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9733343,0.02533072,0.0006281938,0.00002469908,0.0003177369,0.0002245523,0.0000403145,0.0000131565,0.00008631639],"genre_scores_gemma":[0.9904096,0.0007568133,0.008187644,0.00005783726,0.0004010234,0.00001505902,0.0001216548,0.00002711629,0.00002326503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02457391,"threshold_uncertainty_score":0.768814,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3092409743","doi":"10.1016/s1470-2045(20)30451-4","title":"Tazemetostat in advanced epithelioid sarcoma with loss of INI1/SMARCB1: an international, open-label, phase 2 basket study","year":2020,"lang":"en","type":"article","venue":"The Lancet Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":406,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"University of Colorado Denver","keywords":"Epithelioid sarcoma; SMARCB1; Medicine; Sarcoma; Dermatology; Oncology; Internal medicine; Pathology; Chemistry; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.08187789777292803,"gpt":0.4112293891029229,"spread":0.3293514913299949,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004226747,0.0001291708,0.0003448526,0.0000243442,0.00003573341,0.00001605744,0.0008663281,0.00006559211,0.00005417703],"category_scores_gemma":[0.00007513901,0.0000900974,0.00001742984,0.0001348586,0.000107327,0.00001191424,0.0002780734,0.0001480073,0.000004546557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000290496,"about_ca_system_score_gemma":0.00015747,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007437521,"about_ca_topic_score_gemma":0.0004524186,"domain_scores_codex":[0.9988354,0.0002530785,0.0002639437,0.0003267998,0.0001212761,0.0001994383],"domain_scores_gemma":[0.9992678,0.00003140908,0.0001536492,0.0004039322,0.0000841362,0.00005911877],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.03406174,0.009104464,0.05806695,0.0001136252,0.0006137633,0.0001860692,0.007372428,0.003113583,0.7336314,0.0002940671,0.004134913,0.149307],"study_design_scores_gemma":[0.2233452,0.1224761,0.02121137,0.0002096003,0.0002686229,0.0001834719,0.01338128,0.01415208,0.1442941,0.0008594092,0.4577264,0.001892418],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942104,0.0001627794,0.0002943247,0.002647974,0.00009134851,0.0004637474,0.00005626509,0.00001052601,0.002062687],"genre_scores_gemma":[0.995582,0.0002466515,0.0018161,0.00188754,0.0002549123,0.00006390618,0.00007203531,0.00001946014,0.00005732925],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5893373,"threshold_uncertainty_score":0.3674065,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2027577263","doi":"10.1038/ng.2928","title":"Small cell carcinoma of the ovary, hypercalcemic type, displays frequent inactivating germline and somatic mutations in SMARCA4","year":2014,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":385,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University Health Network; University of British Columbia; BC Cancer Agency","funders":"National Cancer Institute","keywords":"SMARCA4; Biology; Somatic cell; Carcinogenesis; Germline mutation; Cancer research; Germline; Ovary; Ovarian cancer; Mutation; Cancer; Chromatin remodeling; Chromatin; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.008610111913358025,"gpt":0.2330455087614577,"spread":0.2244353968480997,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001089205,0.0001061172,0.000112348,0.00002645203,0.00004388028,0.000007606907,0.0001418374,0.0002155007,0.000002826243],"category_scores_gemma":[0.0000862977,0.00008264387,0.00003887139,0.00009727208,0.00005158003,0.000001113602,0.00009007601,0.0002126005,4.848295e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000155135,"about_ca_system_score_gemma":0.00006469244,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002694612,"about_ca_topic_score_gemma":0.00008287937,"domain_scores_codex":[0.999343,0.00005149773,0.0001930847,0.0001889431,0.00009072117,0.0001327144],"domain_scores_gemma":[0.9995118,0.00002493738,0.0000863551,0.0002835074,0.00006209689,0.00003132381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001712052,0.00005131253,0.08826737,0.0001346882,0.000008264732,4.325297e-7,0.0001568307,0.001763896,0.9066001,0.00002734079,0.00009899059,0.002873682],"study_design_scores_gemma":[0.001043642,0.0002046153,0.190635,0.00008137508,0.0000482817,0.00001941228,0.0001265283,0.01879218,0.7871468,0.0006190829,0.00101672,0.0002664043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960487,0.002676598,0.0003787312,0.00006798335,0.0001372791,0.0001243854,0.000008656858,0.000003234478,0.0005544512],"genre_scores_gemma":[0.9965999,0.00008771352,0.002927842,0.0001617599,0.0001020478,0.000004989993,0.00002824344,0.00001646135,0.0000710381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1194533,"threshold_uncertainty_score":0.3370119,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4200108213","doi":"10.1038/s41586-021-04246-z","title":"Targeting SWI/SNF ATPases in enhancer-addicted prostate cancer","year":2021,"lang":"en","type":"article","venue":"Nature","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":317,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Rogel Cancer Center, University of Michigan; National Cancer Institute; National Institutes of Health; Prostate Cancer Foundation; DOD Prostate Cancer Research Program; National Institute of General Medical Sciences; Movember Foundation; University of Michigan; Howard Hughes Medical Institute; U.S. Department of Defense","keywords":"SMARCA4; Prostate cancer; FOXA1; SWI/SNF; Cancer research; Enhancer; Androgen receptor; Chromatin; Chemistry; Chromatin immunoprecipitation; Transcription factor; Cell growth; Biology; Cancer; Chromatin remodeling; Gene expression; Gene; Promoter; Biochemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.004161646031457239,"gpt":0.268612623184877,"spread":0.2644509771534198,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006853169,0.0001138048,0.0001129577,0.00001891734,0.00004151041,0.00001855821,0.00008777766,0.0005912557,0.0001128127],"category_scores_gemma":[0.0001187608,0.0001081604,0.00005021022,0.00015564,0.00001909441,0.000002659501,0.00006040228,0.0005759758,0.000003656597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003116063,"about_ca_system_score_gemma":0.0002087567,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004161977,"about_ca_topic_score_gemma":0.0002367744,"domain_scores_codex":[0.9991753,0.00003353678,0.0001440204,0.0003196271,0.0001166204,0.0002108926],"domain_scores_gemma":[0.9995969,0.000006629888,0.00004599629,0.0001798724,0.0001312204,0.0000394022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004192029,0.00003316141,0.002408375,0.00003771707,0.00002173365,0.00001792349,0.0000771442,0.0009725429,0.9785041,0.000008678954,0.01225768,0.005619086],"study_design_scores_gemma":[0.0005937158,0.00002902416,0.001485841,0.0001027346,0.000009939106,0.00000687903,0.000114093,0.0005049669,0.9150672,0.00005210276,0.08182143,0.0002120873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9593772,0.03897078,0.00003430323,0.0004926194,0.0003089952,0.00007879666,0.00005112435,0.00001727749,0.00066896],"genre_scores_gemma":[0.9936866,0.00237758,0.0005445787,0.0009550237,0.0003765157,0.00003203764,0.0002785971,0.00002038589,0.001728709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06956375,"threshold_uncertainty_score":0.4560305,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088335689","doi":"10.1074/jbc.m007864200","title":"A Novel Nuclear Receptor Corepressor Complex, N-CoR, Contains Components of the Mammalian SWI/SNF Complex and the Corepressor KAP-1","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":309,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"National Cancer Institute","keywords":"Corepressor; Nuclear receptor; Chemistry; Cell biology; Biology; Biochemistry; Transcription factor; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03813719101792301,"gpt":0.2571773284505762,"spread":0.2190401374326532,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003418454,0.0001883508,0.0003982992,0.000007017326,0.0001350614,0.00002607574,0.0005521703,0.0002082324,0.0007334267],"category_scores_gemma":[0.0001527481,0.00009674683,0.0002879813,0.0000583636,0.0007758358,0.000003754328,0.000162326,0.0002683474,0.000002154217],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001886469,"about_ca_system_score_gemma":0.00003323029,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002869253,"about_ca_topic_score_gemma":0.000001149228,"domain_scores_codex":[0.9986951,0.00009180652,0.0005623562,0.000232663,0.0002111532,0.0002068816],"domain_scores_gemma":[0.9988605,0.00006381003,0.0004717321,0.0003564844,0.0001466869,0.0001007519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001242021,0.0001288115,0.0006183325,0.00002915648,0.00009644475,0.000001439595,0.00005595914,0.0001143381,0.9952294,0.00001681433,0.001487815,0.0009794419],"study_design_scores_gemma":[0.01668242,0.0007906291,0.05701286,0.0003327355,0.0002271911,0.001409371,0.0007319453,0.003240672,0.786863,0.0004126441,0.1314852,0.0008113696],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966866,0.0005261902,0.00005920939,0.0007416905,0.00006412771,0.0001305605,0.00008516751,0.000005581073,0.001700845],"genre_scores_gemma":[0.9979058,0.0003921112,0.0005292771,0.0005779567,0.0002562844,0.000003007342,0.00004326773,0.00001366921,0.0002786194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2083665,"threshold_uncertainty_score":0.8030508,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2983766759","doi":"10.1016/j.jtho.2019.10.023","title":"SMARCA4-Deficient Thoracic Sarcomatoid Tumors Represent Primarily Smoking-Related Undifferentiated Carcinomas Rather Than Primary Thoracic Sarcomas","year":2019,"lang":"en","type":"article","venue":"Journal of Thoracic Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":308,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"National Cancer Institute; Marie-Josée and Henry R. Kravis Center for Molecular Oncology; National Institutes of Health","keywords":"Medicine; SMARCA4; Pathology; Thoracic Neoplasm; Sarcoma; Oncology","retraction":null,"screen_n_in":null,"score":{"opus":0.01397567698504677,"gpt":0.3325555856768614,"spread":0.3185799086918146,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001671646,0.000510125,0.001052484,0.0003379871,0.0001635123,0.00007577229,0.0008211505,0.0006318723,0.0002379665],"category_scores_gemma":[0.0001294906,0.0004269995,0.000629017,0.0003848518,0.000205523,0.00002934631,0.0004155728,0.0008785744,0.00005997381],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004949948,"about_ca_system_score_gemma":0.00107874,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004093396,"about_ca_topic_score_gemma":0.00002057645,"domain_scores_codex":[0.9955083,0.0008660192,0.001477889,0.0007074769,0.0006980561,0.0007423231],"domain_scores_gemma":[0.9966155,0.0001064749,0.001516775,0.000948479,0.0005048552,0.0003079745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004535739,0.001435189,0.08837945,0.0005159595,0.001082591,0.0003508324,0.0007809487,0.002557457,0.818715,0.00006031809,0.003681695,0.07790482],"study_design_scores_gemma":[0.007889602,0.01413992,0.3503846,0.002130376,0.002142544,0.01277446,0.002738083,0.004985557,0.484724,0.003009,0.1108846,0.004197292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9840608,0.006480899,0.000745856,0.0005876221,0.001553857,0.0004745015,0.00001768698,0.00004167434,0.006037082],"genre_scores_gemma":[0.9945058,0.0003573282,0.001380243,0.0004011711,0.0003981735,0.00001243761,0.0001023861,0.0001041693,0.00273835],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.333991,"threshold_uncertainty_score":0.9998182,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2990909677","doi":"10.1038/s41588-019-0531-7","title":"Stalled developmental programs at the root of pediatric brain tumors","year":2019,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":299,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University and Génome Québec Innovation Centre; Ontario Genomics; Hôpital Maisonneuve-Rosemont; Douglas Mental Health University Institute; Université Laval; University of Toronto; Université de Sherbrooke; Montreal Children's Hospital; Hospital for Sick Children; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Centre Hospitalier Universitaire de Sherbrooke; McGill University; McGill University Health Centre; SickKids Foundation; Montreal General Hospital; Jewish General Hospital","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Biology; Wnt signaling pathway; Forebrain; Transcriptome; Lineage (genetic); Neuroectoderm; Embryonic stem cell; Subventricular zone; Neuroscience; Neural crest; Neural stem cell; Stem cell; Genetics; Central nervous system; Gene; Mesoderm; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.005661622090003108,"gpt":0.2412066366621174,"spread":0.2355450145721142,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001277848,0.0001184669,0.000105193,0.00001692199,0.00004226687,0.000009352783,0.0002139083,0.0002285898,0.00004653536],"category_scores_gemma":[0.00002595042,0.00008519291,0.0000750496,0.00009839637,0.00003574502,7.427406e-7,0.0001577535,0.000153167,0.00001664636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002317676,"about_ca_system_score_gemma":0.0001321553,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002743589,"about_ca_topic_score_gemma":0.00005822157,"domain_scores_codex":[0.9992033,0.00002574245,0.0001725247,0.000227178,0.0001973355,0.0001739319],"domain_scores_gemma":[0.999531,0.000009960797,0.00008624584,0.0002614218,0.00007467689,0.00003674879],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000206036,0.0001656161,0.2670268,0.0001879437,0.0001679338,0.00000276547,0.0003513928,0.00138278,0.6835009,0.00002350084,0.02496259,0.02202176],"study_design_scores_gemma":[0.00261268,0.0008513216,0.06000678,0.00004116213,0.00008903315,0.00006994452,0.0003477516,0.000624401,0.7526854,0.0001236058,0.1817492,0.0007986791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920175,0.006182875,0.00002980017,0.0001081082,0.0001879656,0.0002501593,0.00001140873,0.000007809652,0.001204381],"genre_scores_gemma":[0.9957289,0.0001493812,0.0009874795,0.0002069746,0.0002322953,0.000008727976,0.0001040611,0.00002031151,0.002561945],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.20702,"threshold_uncertainty_score":0.3474066,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2564765645","doi":"10.1016/j.ccell.2016.11.003","title":"Integrated (epi)-Genomic Analyses Identify Subgroup-Specific Therapeutic Targets in CNS Rhabdoid Tumors","year":2016,"lang":"en","type":"article","venue":"Cancer Cell","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":254,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University; London Health Sciences Centre; Children's Hospital of Western Ontario; Children's Hospital of Eastern Ontario; University of Ottawa; Dalhousie University; Centre Hospitalier Universitaire Sainte-Justine; University Health Network; University of Alberta; Stollery Children's Hospital; Alberta Children's Hospital; McGill University Health Centre; Hospital for Sick Children; Western University; McGill University and Génome Québec Innovation Centre; University of Toronto; SickKids Foundation; Children's & Women's Health Centre of British Columbia; University of Calgary; Princess Margaret Cancer Centre; University of British Columbia; McMaster University; Université de Montréal","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; Canadian Cancer Society Research Institute; Genome Canada; Canadian Institutes of Health Research; McGill University; Génome Québec; Fondation Brain Canada","keywords":"Epigenomics; PDGFRB; Epigenetics; SMARCB1; DNA methylation; Biology; Cancer research; Bioinformatics; Genetics; Gene; Chromatin remodeling; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.0344887262876654,"gpt":0.3125331759256478,"spread":0.2780444496379824,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001181551,0.0002043386,0.0002127175,0.00004876492,0.00004529213,0.00002415754,0.0002498079,0.0001238391,0.0004859553],"category_scores_gemma":[0.000006945591,0.0001472298,0.0001174397,0.0001250475,0.00007574564,0.000006865311,0.00005429367,0.00008085564,0.00004130829],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001806542,"about_ca_system_score_gemma":0.0001529569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003854427,"about_ca_topic_score_gemma":0.0007269866,"domain_scores_codex":[0.9987653,0.00006100643,0.0002831364,0.0004546597,0.0001090081,0.0003268437],"domain_scores_gemma":[0.9993732,0.00001259108,0.00009555013,0.0003740786,0.00006871347,0.00007584435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006319158,0.00003801006,0.002741563,0.00001584654,0.00002847362,0.000003727097,0.00006541456,0.0001664513,0.9822959,0.000005169209,0.001704461,0.01287178],"study_design_scores_gemma":[0.001112611,0.00008548926,0.007189448,0.00008602662,0.00002217326,0.000003782292,0.000178343,0.0001616694,0.9458442,0.0001360903,0.04480557,0.0003746283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9579215,0.03763451,0.002569761,0.00009128703,0.0003160413,0.0001379582,0.00004642616,0.00002199667,0.001260535],"genre_scores_gemma":[0.9904406,0.007233104,0.0001212638,0.0002020404,0.000231941,0.00005179288,0.00004870064,0.000038776,0.001631761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04310111,"threshold_uncertainty_score":0.6003855,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025669441","doi":"10.1371/journal.pone.0072162","title":"Type-Specific Cell Line Models for Type-Specific Ovarian Cancer Research","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":254,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency; Vancouver General Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; BC Cancer Foundation","keywords":"Serous carcinoma; Serous fluid; Ovarian cancer; Clear cell carcinoma; Clear cell; ARID1A; Cancer research; Context (archaeology); Biology; Microsatellite instability; Cancer; Cell of origin; Mutation; Oncology; Bioinformatics; Pathology; Carcinoma; Medicine; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.1886555560035596,"gpt":0.3308625504102079,"spread":0.1422069944066483,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002284302,0.0001408736,0.0001746965,0.00005082209,0.0001305963,0.00005628092,0.0002422466,0.0001795899,0.0003819616],"category_scores_gemma":[0.00002465411,0.0001338656,0.0000561475,0.0001691829,0.00006114051,0.000007008262,0.00008566068,0.0001666897,0.0001568188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004636437,"about_ca_system_score_gemma":0.0001196803,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009066746,"about_ca_topic_score_gemma":0.00001691769,"domain_scores_codex":[0.9986501,0.00004448462,0.0002046221,0.0004271889,0.000278592,0.0003950407],"domain_scores_gemma":[0.9985061,0.0000250162,0.0000457026,0.0004921465,0.0008216951,0.0001093113],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001257257,0.0003609128,0.00002022855,0.00007660301,0.00006078997,3.635828e-7,0.00005857262,0.000756204,0.9635661,0.0001092408,0.03319835,0.001666859],"study_design_scores_gemma":[0.001020679,0.0005178666,0.00003825561,0.0001070221,0.00002686432,8.127707e-7,0.00007975545,0.01535439,0.9382933,0.001895761,0.04232366,0.0003416102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.980437,0.01156586,0.002244146,0.000581242,0.0001895965,0.0007728425,0.00004366099,0.00003352258,0.004132084],"genre_scores_gemma":[0.9713853,0.007262799,0.008098496,0.0001447905,0.001259104,0.0002449233,0.0001600886,0.00006537794,0.01137913],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02527282,"threshold_uncertainty_score":0.545888,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2616150682","doi":"10.1097/pas.0000000000000797","title":"SMARCB1 (INI-1)-deficient Sinonasal Carcinoma","year":2017,"lang":"en","type":"article","venue":"The American Journal of Surgical Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":253,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Cancer Institute","keywords":"SMARCB1; Pathology; Medicine; Immunohistochemistry; Carcinoma; Dysplasia; Nasal cavity; Biology; Anatomy","retraction":null,"screen_n_in":null,"score":{"opus":0.01488247037009427,"gpt":0.2852180007245632,"spread":0.2703355303544689,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000568971,0.0001148082,0.0002850897,0.00002666163,0.0002501877,0.00003190959,0.0006024294,0.00004671502,0.00001830086],"category_scores_gemma":[0.00008165917,0.00007116919,0.0001985435,0.00003151526,0.0009853771,0.000003419101,0.0001590965,0.0001982823,0.000008030531],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001376688,"about_ca_system_score_gemma":0.00009519876,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002122577,"about_ca_topic_score_gemma":0.000002852689,"domain_scores_codex":[0.9989972,0.000163309,0.000296745,0.0001562041,0.0001594493,0.0002270646],"domain_scores_gemma":[0.9985457,0.00003588667,0.0006670335,0.0005303409,0.0001304244,0.00009062517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005471574,0.0006163869,0.0790214,0.00003103834,0.0003552055,0.003616366,0.0008465762,0.001846537,0.5553082,0.0007918168,0.008878875,0.343216],"study_design_scores_gemma":[0.01159171,0.01921667,0.5258235,0.0001605057,0.000450467,0.05827446,0.002560709,0.001181558,0.08273087,0.002700105,0.2934195,0.001889901],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953163,0.0006989148,0.0003431076,0.001821079,0.0002932804,0.00003424815,0.000004921407,0.00000276963,0.001485351],"genre_scores_gemma":[0.9982612,0.0003527139,0.0003028841,0.0002995054,0.0006133037,0.000001541636,0.000001917814,0.00001338257,0.0001535624],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4725773,"threshold_uncertainty_score":0.3630663,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2167064895","doi":"10.1038/ng.1105","title":"Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome","year":2012,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":244,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Biology; Genetics; Missense mutation; Chromatin remodeling; Exome sequencing; Transcription factor; SMARCA4; Mutation; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01113729179701423,"gpt":0.2833789914719329,"spread":0.2722416996749186,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001407164,0.0001684503,0.0001360636,0.00005773067,0.00005209836,0.00001830382,0.0001494249,0.0004522713,0.00002526523],"category_scores_gemma":[0.00006566368,0.0001678294,0.00007425732,0.0001346397,0.00004142702,0.000003539992,0.0000638342,0.0003032216,0.00002164603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003385834,"about_ca_system_score_gemma":0.00006670932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008979593,"about_ca_topic_score_gemma":0.00007243611,"domain_scores_codex":[0.998962,0.00004676229,0.0002115477,0.0002539153,0.0001527623,0.0003729418],"domain_scores_gemma":[0.9993764,0.0000126728,0.00005361761,0.0003669052,0.00006475882,0.0001256559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002142863,0.0009245002,0.1563689,0.0002305049,0.0003751545,0.0001953609,0.001137041,0.01166657,0.7973117,0.00009780875,0.01413523,0.01734298],"study_design_scores_gemma":[0.004752649,0.0009369488,0.4195385,0.0002056457,0.0002757829,0.003389263,0.0004726526,0.003028496,0.4211388,0.0006267705,0.1431301,0.002504338],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850132,0.01367876,0.0001557927,0.0000886366,0.0004275052,0.0001588329,0.00002380145,0.00001666749,0.0004367473],"genre_scores_gemma":[0.9959202,0.0003105867,0.00230142,0.0005528531,0.000297184,0.00001883638,0.00010916,0.00003561771,0.00045409],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3761729,"threshold_uncertainty_score":0.6843883,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031692395","doi":"10.1002/path.2911","title":"Loss of BAF250a (<i>ARID1A</i>) is frequent in high‐grade endometrial carcinomas","year":2011,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":236,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Paul's Hospital; Centre for Advancing Health Outcomes; Vancouver General Hospital; University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research; University of British Columbia; Michael Smith Health Research BC; Sanofi; Ovarian Cancer Canada; BC Cancer Foundation","keywords":"Clear cell carcinoma; Pathology; Clear cell; Medicine; Adenocarcinoma; Carcinoma; Adenosquamous carcinoma; Endometrial hyperplasia; Cancer; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.02723187470418587,"gpt":0.2585711788988964,"spread":0.2313393041947105,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007393937,0.00009321328,0.0002407352,0.00009167007,0.00001937965,0.000001918647,0.0002859047,0.0001192468,0.00004991163],"category_scores_gemma":[0.00009318598,0.00006289394,0.0001114324,0.0000970475,0.0001294189,0.000002696092,0.00005893167,0.0001646373,0.000002001891],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001651882,"about_ca_system_score_gemma":0.00009168782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000144215,"about_ca_topic_score_gemma":0.00003425567,"domain_scores_codex":[0.9989832,0.00020205,0.0004442539,0.00009366283,0.0001180317,0.0001587969],"domain_scores_gemma":[0.9992578,0.0000294803,0.0003385691,0.0002363781,0.00009878372,0.00003897571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000625244,0.000151005,0.01500952,0.00001880592,0.00006499781,0.0001084299,0.001382317,0.0001435291,0.9808868,0.00009530069,0.0006341401,0.0008799421],"study_design_scores_gemma":[0.00381609,0.001655255,0.02576067,0.00004305878,0.0001056504,0.001819356,0.0003027209,0.0000341395,0.9630267,0.002445796,0.0008143046,0.0001762275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960428,0.002255768,0.000872773,0.0001335161,0.0003821559,0.00005641812,0.00001060182,0.000001227549,0.0002446683],"genre_scores_gemma":[0.9979491,0.0006593777,0.0009001764,0.00017836,0.0002560281,0.00000109908,0.000001790405,0.00001039511,0.00004372252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01786004,"threshold_uncertainty_score":0.256474,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2738156861","doi":"10.1038/ncb3582","title":"ARID1A-mutated ovarian cancers depend on HDAC6 activity","year":2017,"lang":"en","type":"article","venue":"Nature Cell Biology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":231,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health","keywords":"ARID1A; Cancer research; HDAC6; Biology; Chromatin; Mutation; Epigenetics; Psychological repression; Protein subunit; Histone; Genetics; Gene; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.008569571080236914,"gpt":0.2921513207555779,"spread":0.283581749675341,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001283264,0.0001894705,0.0001771615,0.00002844317,0.0002767868,0.00003427728,0.0004075184,0.0008365299,0.00004704432],"category_scores_gemma":[0.0001046999,0.0001620434,0.00009592783,0.00002447794,0.0001051594,0.000002966912,0.0001133809,0.0004589882,0.00002403369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005156176,"about_ca_system_score_gemma":0.000159514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00025462,"about_ca_topic_score_gemma":0.0003603716,"domain_scores_codex":[0.998973,0.00005690132,0.0001089286,0.0004945697,0.00006817184,0.0002984341],"domain_scores_gemma":[0.998921,0.00001382643,0.0001587224,0.000763454,0.000062904,0.00008005652],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002561621,0.00003853463,0.0007033711,0.00001279486,0.00004638319,0.000005801308,0.00001200406,0.0001889699,0.9822157,0.00008613571,0.002476265,0.01395788],"study_design_scores_gemma":[0.001017398,0.0003444561,0.002937558,0.00001283961,0.00001971059,0.000007432764,0.000007990131,0.0004757329,0.9110268,0.0002054753,0.08364996,0.0002946779],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9737681,0.000746963,0.0002062603,0.00037636,0.0009860829,0.0001240559,0.00005446547,0.00002137526,0.02371636],"genre_scores_gemma":[0.9973373,0.000220344,0.0002130706,0.0006409492,0.0004889424,0.00001236898,0.0001207226,0.00002132665,0.0009449176],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0811737,"threshold_uncertainty_score":0.6607938,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2998197281","doi":"10.1093/neuonc/noz235","title":"Molecular subgrouping of atypical teratoid/rhabdoid tumors—a reinvestigation and current consensus","year":2019,"lang":"en","type":"review","venue":"Neuro-Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":229,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Brain Tumour Charity; Deutsche Forschungsgemeinschaft; Cancer Research UK","keywords":"Consensus conference; Atypical teratoid rhabdoid tumor; Current (fluid); Medicine; Pathology; Internal medicine; Immunohistochemistry; Geology","retraction":null,"screen_n_in":null,"score":{"opus":0.04495351810615278,"gpt":0.3486779024792435,"spread":0.3037243843730907,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002126028,0.0003599701,0.001165324,0.0000879346,0.0000408951,0.00001408097,0.0002056088,0.0005327762,0.000006575052],"category_scores_gemma":[0.0002593664,0.0003308908,0.0002798409,0.0001082056,0.0002221504,0.000001622983,0.0002020031,0.0004118293,0.00001067198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006204235,"about_ca_system_score_gemma":0.000865098,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005671804,"about_ca_topic_score_gemma":0.000003253227,"domain_scores_codex":[0.9978026,0.0004161716,0.0006971248,0.0006644572,0.0001466869,0.0002729722],"domain_scores_gemma":[0.9986647,0.0001176664,0.0005214281,0.0004725684,0.0001029232,0.0001207267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004893851,0.00006079196,0.0000167214,0.006785706,0.00008081453,0.00002515204,0.00002144086,0.00003008338,0.1066458,0.00013731,0.00093279,0.8852144],"study_design_scores_gemma":[0.0004283028,0.0005511853,0.000002720277,0.00166345,0.0002993334,0.0003391899,0.000006009296,0.0001302978,0.005384599,0.00003890418,0.9908423,0.000313742],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02491116,0.9734551,0.0001575964,0.00005124897,0.0005615169,0.0005548073,0.00003841813,0.0000155478,0.0002545466],"genre_scores_gemma":[0.005377578,0.9934306,0.0003886762,0.000175787,0.0002635994,0.00004940243,0.0002380744,0.00006380938,0.00001252246],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9899095,"threshold_uncertainty_score":0.9999143,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2898544952","doi":"10.1016/j.cell.2018.09.051","title":"Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer","year":2018,"lang":"en","type":"article","venue":"Cell","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":228,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health; Van Andel Research Institute; National Science Foundation of Sri Lanka; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; F. M. Kirby Foundation; American Association for Cancer Research","keywords":"Biology; P-TEFb; Gene silencing; Epigenetics; Molecular biology; Gene expression; Cancer cell; Gene; Cancer research; Cancer; Genetics; Promoter","retraction":null,"screen_n_in":null,"score":{"opus":0.01089041962498453,"gpt":0.2698352215218477,"spread":0.2589448018968631,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008921202,0.00009589981,0.00008529711,0.00001907561,0.00004243768,0.0000111186,0.0001172863,0.00009338968,0.0001017802],"category_scores_gemma":[0.00002569347,0.00008967199,0.00003233536,0.00006140482,0.0000653559,0.000001563483,0.0000525186,0.00005169732,0.00002168515],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001589551,"about_ca_system_score_gemma":0.00007127992,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001311477,"about_ca_topic_score_gemma":0.00006026676,"domain_scores_codex":[0.9992938,0.00002291594,0.0001448625,0.000261229,0.00006791259,0.0002092465],"domain_scores_gemma":[0.9996741,0.000006980777,0.00004056599,0.00016981,0.00006433209,0.00004414467],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002134669,0.0000258631,0.00235293,0.00001325519,0.000004290167,7.644028e-7,0.00005781067,0.0003270405,0.9924195,0.00000141263,0.0008529025,0.003922855],"study_design_scores_gemma":[0.0002423597,0.0000862858,0.0008015129,0.00001977362,0.000004082905,6.500354e-7,0.00006149519,0.001166041,0.9843903,0.00004755252,0.013042,0.0001379071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926323,0.003553735,0.0005746873,0.0000612006,0.0001752938,0.00007002994,0.000004478073,0.00001043349,0.002917886],"genre_scores_gemma":[0.9962301,0.001036871,0.001188107,0.0001835299,0.0005498265,0.00001924561,0.00001789895,0.00001714512,0.000757309],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0121891,"threshold_uncertainty_score":0.3656718,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1941960325","doi":"10.1002/path.4633","title":"Dual loss of the <scp>SWI</scp>/<scp>SNF</scp> complex <scp>ATPases SMARCA4</scp>/<scp>BRG1</scp> and <scp>SMARCA2</scp>/<scp>BRM</scp> is highly sensitive and specific for small cell carcinoma of the ovary, hypercalcaemic type","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":225,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; Terry Fox Foundation; Rivkin Center for Ovarian Cancer","keywords":"SMARCA4; Cancer research; Biology; Trichostatin A; Histone deacetylase; Chromatin remodeling; Chromatin; Histone; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03324258209698763,"gpt":0.2473025126320964,"spread":0.2140599305351087,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.002995528,0.00130375,0.001990284,0.0003741833,0.0006772432,0.0001420011,0.001739545,0.001208758,0.000003770581],"category_scores_gemma":[0.004749423,0.0008990668,0.0009232793,0.000755247,0.00232074,0.00007143222,0.001365182,0.001545159,0.00001934995],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001759038,"about_ca_system_score_gemma":0.0009996608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001457294,"about_ca_topic_score_gemma":0.0001201785,"domain_scores_codex":[0.9919738,0.00166692,0.00216333,0.001269907,0.001150301,0.001775778],"domain_scores_gemma":[0.9879721,0.004804211,0.002751808,0.001739471,0.002047095,0.0006852793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001006235,0.000768864,0.01894787,0.0005706218,0.0008017034,0.0002773141,0.01278871,0.0007319009,0.8254809,0.0002214338,0.1385963,0.0007137741],"study_design_scores_gemma":[0.01137469,0.004623847,0.05560659,0.0004864401,0.002006094,0.01006914,0.03172298,0.001500229,0.7765208,0.003099359,0.102763,0.0002268083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9768945,0.01549998,0.0006217805,0.0002691118,0.001523975,0.001239111,0.0007388085,0.0000438796,0.00316885],"genre_scores_gemma":[0.9881111,0.00370006,0.001369276,0.001163632,0.001481145,0.00003126265,0.0001052701,0.000232755,0.00380554],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04896007,"threshold_uncertainty_score":0.9999714,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097848060","doi":"10.1038/emboj.2011.391","title":"Signal‐dependent incorporation of MyoD–BAF60c into Brg1‐based SWI/SNF chromatin‐remodelling complex","year":2011,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":221,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; Instituto de Salud Carlos III; Associazione Italiana per la Ricerca sul Cancro","keywords":"SWI/SNF; Biology; MyoD; SMARCA4; Chromatin remodeling; Cell biology; Genetics; Chromatin; Molecular biology; Transcription factor; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.04814861663268781,"gpt":0.2617718531445893,"spread":0.2136232365119015,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000600017,0.0001464725,0.0001689969,0.00004245932,0.0002013238,0.00002838877,0.0003295795,0.00008136161,0.0001942492],"category_scores_gemma":[0.00002142708,0.000106162,0.000132426,0.00006964864,0.00008845368,0.000007246315,0.00005786737,0.0001831758,0.000008975033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003085376,"about_ca_system_score_gemma":0.0001741766,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008110969,"about_ca_topic_score_gemma":0.00003104829,"domain_scores_codex":[0.9988508,0.0001236601,0.0004181405,0.0001640474,0.0002609265,0.0001824258],"domain_scores_gemma":[0.9990492,0.00001352287,0.000375265,0.0002927224,0.0001919725,0.0000772432],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001634377,0.00009925442,0.0003112165,0.00003519939,0.00008019491,0.000004304198,0.0006454489,0.01634326,0.9751109,0.00007038395,0.0008304783,0.006305859],"study_design_scores_gemma":[0.001329522,0.0005352522,0.0008301169,0.000123229,0.00009193794,0.0001858577,0.0004314031,0.09355361,0.8948961,0.007100088,0.0005913146,0.0003315359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8735361,0.0004797769,0.1241187,0.0001045063,0.0001364218,0.00009764984,0.000004441134,0.000009547576,0.001512923],"genre_scores_gemma":[0.9912558,0.0000842342,0.007950464,0.0002149166,0.0003563147,0.000003768241,0.00002310123,0.00002218206,0.0000892852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1177197,"threshold_uncertainty_score":0.432916,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2024699009","doi":"10.1002/humu.22394","title":"Coffin-Siris Syndrome and the BAF Complex: Genotype-Phenotype Study in 63 Patients","year":2013,"lang":"en","type":"article","venue":"Human Mutation","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":220,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital","funders":"Santen","keywords":"SMARCB1; ARID1A; SMARCA4; Biology; Phenotype; Genetics; SWI/SNF; Genotype; Exome sequencing; Germline; Mutation; Gene; Epigenetics; Chromatin remodeling","retraction":null,"screen_n_in":null,"score":{"opus":0.01408649600179193,"gpt":0.2602044668527999,"spread":0.2461179708510079,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001117714,0.00007404764,0.00008597548,0.00002212197,0.00008621077,0.00003318634,0.00006766785,0.00003676395,0.00005512967],"category_scores_gemma":[0.00002020346,0.00005606299,0.00001798585,0.00004069016,0.00005190659,0.000004216176,0.00003814051,0.0000445761,0.0000202972],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001186646,"about_ca_system_score_gemma":0.00001096959,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003137986,"about_ca_topic_score_gemma":0.0002484417,"domain_scores_codex":[0.9994349,0.00007202225,0.0001517739,0.000163169,0.00008623691,0.00009184902],"domain_scores_gemma":[0.9997231,0.000009207889,0.00005158708,0.000135547,0.00006082049,0.00001968805],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009448674,0.003208579,0.6702863,0.0003142979,0.000640638,0.0000304488,0.02285496,0.006386622,0.1698949,0.002403838,0.01465399,0.1083805],"study_design_scores_gemma":[0.003460168,0.0003277884,0.9925104,0.000008222018,0.00001660517,0.000003386376,0.0004107088,0.001992365,0.0001802086,0.0008204399,0.000140984,0.0001287617],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987962,0.0001253068,0.00009450856,0.00003897246,0.00003526283,0.0004551301,0.000002040876,0.000006503971,0.0004460576],"genre_scores_gemma":[0.9994756,0.000006436037,0.00007623326,0.0001350747,0.00002764931,0.00004696551,0.0001014944,0.00001013094,0.0001204275],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3222241,"threshold_uncertainty_score":0.2286182,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979321534","doi":"10.1016/j.ejca.2011.09.005","title":"Central nervous system atypical teratoid rhabdoid tumours: The Canadian Paediatric Brain Tumour Consortium experience","year":2011,"lang":"en","type":"article","venue":"European Journal of Cancer","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":214,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Centre hospitalier universitaire de Québec; Saskatchewan Cancer Agency; CancerCare Manitoba; Montreal Children's Hospital; Centre Hospitalier Universitaire Sainte-Justine; British Columbia Children's Hospital; Children's Hospital of Eastern Ontario; Children's Hospital of Western Ontario; McGill University; Alberta Children's Hospital; Stollery Children's Hospital; Hospital for Sick Children; McMaster University","funders":"","keywords":"Central nervous system; Medicine; Pathology; Oncology; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01645005950500219,"gpt":0.2363133910167354,"spread":0.2198633315117332,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004807443,0.0001538267,0.000156405,0.00004894947,0.000175813,0.00005344464,0.0004521036,0.00004011583,0.00007572179],"category_scores_gemma":[0.00007242884,0.000105896,0.0001464994,0.00009375758,0.0001124492,0.000007974934,0.00004602096,0.0002250518,0.000009784982],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001127068,"about_ca_system_score_gemma":0.0005852743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001802444,"about_ca_topic_score_gemma":0.004982022,"domain_scores_codex":[0.9985342,0.0002954561,0.0004094293,0.0001788726,0.0002168809,0.0003651582],"domain_scores_gemma":[0.9989724,0.000009467034,0.0002722823,0.0002216599,0.000207094,0.0003170746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003058335,0.0003524647,0.134533,0.0003191228,0.0009990819,0.003977447,0.02699897,0.006883279,0.3571953,0.0009113245,0.3007179,0.1640538],"study_design_scores_gemma":[0.004234597,0.0017527,0.4528745,0.0006767664,0.0003208103,0.003529003,0.006032348,0.001059015,0.1286775,0.00003204981,0.399184,0.001626789],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9854798,0.00667645,0.0005992777,0.000725825,0.001026161,0.00009245817,0.0000163829,0.000009157219,0.005374535],"genre_scores_gemma":[0.9968919,0.0001932334,0.0002200118,0.000815992,0.00153746,0.000003232027,0.000002185614,0.00003275902,0.000303201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3183416,"threshold_uncertainty_score":0.4318314,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154833452","doi":"10.7554/elife.06857","title":"Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells","year":2015,"lang":"en","type":"article","venue":"eLife","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":207,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"National Institutes of Health; Institut National Du Cancer; Centre National de la Recherche Scientifique; Ligue Contre le Cancer; Institut National de la Santé et de la Recherche Médicale; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Fondation ARC pour la Recherche sur le Cancer; Agence Nationale de la Recherche","keywords":"Microphthalmia-associated transcription factor; SOX10; Transcription factor; Chromatin; IRF4; Enhancer; Biology; Cell biology; Regulator; Chromatin immunoprecipitation; Chromatin remodeling; Genetics; CTCF; Promoter; Gene; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.02123392735777721,"gpt":0.2411676000175439,"spread":0.2199336726597667,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001563299,0.0001140341,0.0001082684,0.00002964069,0.00003364741,0.0000120281,0.0000581008,0.0001166162,0.00003880396],"category_scores_gemma":[0.00001615707,0.0001129292,0.0000271668,0.00003774377,0.00002461017,0.000005309376,0.00003579474,0.00004567896,0.00002078665],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007276236,"about_ca_system_score_gemma":0.00006017405,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000414622,"about_ca_topic_score_gemma":0.0001427788,"domain_scores_codex":[0.9991791,0.00004128916,0.0002205028,0.0002446555,0.0001690614,0.0001454251],"domain_scores_gemma":[0.9996279,0.000003012068,0.00006090244,0.0001818016,0.00004326944,0.00008307627],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006456488,0.00002582849,0.003254885,0.0000164105,0.0000109582,7.403709e-7,0.0003845685,0.0002214039,0.9916232,0.000003817729,0.002774834,0.001618834],"study_design_scores_gemma":[0.002110296,0.0002406438,0.01149249,0.00003481414,0.00001385614,0.00001022598,0.0001601313,0.003923702,0.9677079,0.00004498453,0.01397912,0.0002818423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975845,0.001148853,0.0005992327,0.0000602712,0.0001235727,0.0001256469,0.00001514505,0.00001378313,0.0003290358],"genre_scores_gemma":[0.9974355,0.0002063581,0.00134121,0.0001821846,0.0001112152,0.000006887847,0.0001009345,0.00001952543,0.00059623],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02391526,"threshold_uncertainty_score":0.4605118,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1993582197","doi":"10.1371/journal.pone.0017830","title":"Histone Demethylase JMJD2B Functions as a Co-Factor of Estrogen Receptor in Breast Cancer Proliferation and Mammary Gland Development","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":200,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research; University Health Network","funders":"Canadian Institutes of Health Research","keywords":"Gene knockdown; Estrogen receptor; Demethylase; Biology; Cancer research; Estrogen receptor alpha; Estrogen receptor beta; Epigenetics; Estrogen; Transcription factor; Breast cancer; Cell biology; Internal medicine; Cancer; Endocrinology; Medicine; Cell culture; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.03459997276266588,"gpt":0.254160209529918,"spread":0.2195602367672521,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005684256,0.00008171677,0.0001130619,0.000033254,0.00003084507,0.000004631148,0.00004689887,0.00007536524,0.00009318062],"category_scores_gemma":[0.00001289828,0.00007979938,0.00001609382,0.00004086003,0.00002777216,0.000004794094,0.00002628287,0.00004648042,0.000004068198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003206284,"about_ca_system_score_gemma":0.0001743657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001283684,"about_ca_topic_score_gemma":0.00008225482,"domain_scores_codex":[0.9994413,0.00002193216,0.0001665489,0.0001757304,0.00009399479,0.0001004918],"domain_scores_gemma":[0.9997061,0.000002936127,0.00005839213,0.0001163109,0.00006759704,0.00004868248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001989328,0.0004816537,0.06196447,0.00009324349,0.0001383344,6.602606e-7,0.0003966377,0.000002306897,0.9327567,0.00000658951,0.0001465859,0.003813921],"study_design_scores_gemma":[0.0006720085,0.0001138666,0.02525499,0.00009374096,0.00002981136,0.000005377841,0.00003370662,0.0001008191,0.9731362,0.00001308179,0.0003980827,0.0001483405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99831,0.001001627,0.0001863383,0.00006801076,0.00002479397,0.0001469283,0.00004739225,0.000007270523,0.0002076774],"genre_scores_gemma":[0.9945225,0.0003923631,0.004426759,0.0000562094,0.00006657616,0.00008021393,0.00007619037,0.00001117445,0.0003680446],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04037951,"threshold_uncertainty_score":0.3254124,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3004964052","doi":"10.1172/jci134402","title":"Epigenetic driver mutations in ARID1A shape cancer immune phenotype and immunotherapy","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":200,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Rogel Cancer Center, University of Michigan; National Cancer Institute; National Institutes of Health; College of Pharmacy, University of Michigan; Ovarian Cancer Research Alliance; National Institute of Allergy and Infectious Diseases; National Cancer Center; University of Michigan","keywords":"ARID1A; Epigenetics; Biology; Cancer research; Immune system; Cancer; Immunotherapy; Chromatin; Cancer immunotherapy; EZH2; Phenotype; Immunology; Cancer cell; Gene; Mutation; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.05520385444857682,"gpt":0.3615813248961588,"spread":0.306377470447582,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003716007,0.00007217497,0.0001985197,0.00002247448,0.00002520211,0.00001544374,0.00008580944,0.0001057398,0.00003031312],"category_scores_gemma":[0.0003879126,0.00006354248,0.00008358466,0.00007954761,0.0001074395,0.000008143904,0.00001949123,0.0001813156,0.000001657286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009097605,"about_ca_system_score_gemma":0.0002076917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001937055,"about_ca_topic_score_gemma":0.0000137205,"domain_scores_codex":[0.9988682,0.00009791322,0.0007232089,0.0001258516,0.0001071409,0.00007765912],"domain_scores_gemma":[0.9992979,0.0000455756,0.0003600512,0.00007140199,0.0001205002,0.000104611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004085065,0.00008034434,0.1121561,0.00004409631,0.0001503898,0.000006020553,0.0008123458,0.007096599,0.7725633,0.00005150013,0.000646132,0.1059847],"study_design_scores_gemma":[0.006935653,0.001967593,0.8476264,0.0003070722,0.0001242951,0.00002136871,0.0002714731,0.04760137,0.080727,0.004269865,0.009656091,0.0004917512],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922706,0.003963043,0.0008431249,0.002652596,0.0001740589,0.00005845882,0.000002499062,0.000002408597,0.00003324423],"genre_scores_gemma":[0.9929903,0.002772374,0.002063797,0.001611271,0.000522228,0.000002372588,0.000007473508,0.00001045148,0.00001980147],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7354704,"threshold_uncertainty_score":0.2591187,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1982474516","doi":"10.1007/s00401-014-1323-x","title":"SMARCA4-mutated atypical teratoid/rhabdoid tumors are associated with inherited germline alterations and poor prognosis","year":2014,"lang":"en","type":"article","venue":"Acta Neuropathologica","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":196,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Deutsche Kinderkrebsstiftung","keywords":"Atypical teratoid rhabdoid tumor; Germline; SMARCA4; Germline mutation; Pathology; Biology; Medicine; SMARCB1; Mutation; Cancer research; Medulloblastoma; Genetics; Epigenetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01060253456954311,"gpt":0.2214937285294707,"spread":0.2108911939599276,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001696638,0.0002096754,0.0002147081,0.00003381085,0.0001697222,0.0000641122,0.0001297861,0.0001315969,0.00001428473],"category_scores_gemma":[0.0004798643,0.0001583649,0.00004692519,0.0001376299,0.0001328729,0.00000596025,0.00009271538,0.0001645632,0.000003112984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009198281,"about_ca_system_score_gemma":0.00002774781,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002411562,"about_ca_topic_score_gemma":0.00001522794,"domain_scores_codex":[0.9986678,0.0002387271,0.0002245677,0.0004866871,0.0001217127,0.0002605058],"domain_scores_gemma":[0.9993681,0.00003592902,0.0001443322,0.0002243158,0.0001259728,0.0001013282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002036663,0.0002104524,0.02430119,0.00001684272,0.00003094954,0.00005849615,0.00004844501,0.00008922724,0.9722598,0.00001101941,0.0009830178,0.001786914],"study_design_scores_gemma":[0.003946223,0.004770212,0.7859515,0.0002891998,0.0001631351,0.0007431048,0.0000991424,0.01440185,0.1790448,0.000127681,0.009059342,0.001403795],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982605,0.00009355689,0.0003681312,0.0007091525,0.00004178593,0.0001951094,0.00002979499,0.00007824819,0.000223703],"genre_scores_gemma":[0.9976336,0.0000551466,0.0005012779,0.001299448,0.0001045586,0.00004589992,0.0001952767,0.00003175295,0.0001329818],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7932149,"threshold_uncertainty_score":0.6457933,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3008366344","doi":"10.1200/jco.19.01776","title":"Efficacy of High-Dose Chemotherapy and Three-Dimensional Conformal Radiation for Atypical Teratoid/Rhabdoid Tumor: A Report From the Children’s Oncology Group Trial ACNS0333","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":192,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Calgary","funders":"National Cancer Institute","keywords":"Medicine; Cohort; Radiation therapy; Oncology; Atypical teratoid rhabdoid tumor; Internal medicine; Chemotherapy; Hazard ratio; Surgical oncology; Surgery; Confidence interval","retraction":null,"screen_n_in":null,"score":{"opus":0.04812531713970524,"gpt":0.3846029662468026,"spread":0.3364776491070974,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001640911,0.0001518555,0.0008898143,0.00001780213,0.00006142658,0.00001090995,0.0002350221,0.0004226769,0.00003006876],"category_scores_gemma":[0.002638853,0.0001004207,0.0004298513,0.00004456061,0.0002526745,0.0000096597,0.00007790246,0.0004291619,9.389201e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003030603,"about_ca_system_score_gemma":0.001056013,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003716277,"about_ca_topic_score_gemma":0.00004120035,"domain_scores_codex":[0.9971348,0.0002541315,0.001945952,0.0002773363,0.0002118681,0.0001759007],"domain_scores_gemma":[0.9963545,0.001165823,0.001869671,0.0001873059,0.0002207009,0.0002019689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.448304,0.001956783,0.01274987,0.0000203286,0.001492999,0.00007828254,0.000185956,0.0004650538,0.02360816,0.0001194216,0.02396753,0.4870516],"study_design_scores_gemma":[0.3414229,0.07231667,0.3552752,0.00007571382,0.0007246682,0.001014564,0.00007083765,0.004023081,0.00768997,0.001068152,0.2157672,0.0005510817],"study_design_candidate":"randomized_trial","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891962,0.0008232395,0.00203056,0.006596096,0.0008461786,0.0004441306,0.00003146987,0.00000429942,0.0000277666],"genre_scores_gemma":[0.9851722,0.0002543145,0.004553774,0.00520691,0.004704514,0.000009849659,0.00007473108,0.00001740401,0.000006314733],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4865005,"threshold_uncertainty_score":0.4095037,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2911595146","doi":"10.1038/s41467-019-08380-1","title":"SMARCA4 loss is synthetic lethal with CDK4/6 inhibition in non-small cell lung cancer","year":2019,"lang":"en","type":"article","venue":"Nature Communications","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":189,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Jewish General Hospital; BC Cancer Agency; Montreal Children's Hospital; University of British Columbia; McGill University; McGill University Health Centre","funders":"Natural Sciences and Engineering Research Council of Canada; Terry Fox Research Institute; McGill University Health Centre; Canadian Institutes of Health Research; Cancer Research Society","keywords":"SMARCA4; Cyclin D1; Cancer research; Biology; Lung cancer; Cyclin D; Etoposide; Cell growth; Chromatin; Medicine; Cancer; Cell cycle; Chromatin remodeling; Internal medicine; Gene; Genetics; Chemotherapy","retraction":null,"screen_n_in":null,"score":{"opus":0.006623026746210639,"gpt":0.2669261178948399,"spread":0.2603030911486293,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010093,0.0001165366,0.000107881,0.00004187224,0.00006814559,0.00001696092,0.0003068851,0.0002628551,0.00003558018],"category_scores_gemma":[0.000008938273,0.0001054481,0.00004658922,0.0001361433,0.0000568055,0.000004014871,0.0001612977,0.0004489871,0.00001067494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004758771,"about_ca_system_score_gemma":0.0001198957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001346532,"about_ca_topic_score_gemma":0.001157591,"domain_scores_codex":[0.9993394,0.00004902773,0.0001379057,0.0002306222,0.00008861206,0.0001544477],"domain_scores_gemma":[0.9986289,0.00002074955,0.00006855842,0.001148312,0.00009819591,0.00003529927],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002052092,0.0006626704,0.1455772,0.0003841196,0.0001444601,0.000006860108,0.001630907,0.00400358,0.8330384,0.0004360687,0.01083799,0.003072482],"study_design_scores_gemma":[0.007395362,0.0005390673,0.04839206,0.00179606,0.0002601524,0.000118334,0.0009840099,0.04327644,0.794138,0.0002188558,0.1006814,0.002200337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839113,0.008814658,0.0001712267,0.001328873,0.00007001955,0.0002694597,0.00003471049,0.00001134624,0.005388409],"genre_scores_gemma":[0.9956652,0.001318165,0.001510188,0.0005992379,0.00004329503,0.00007571089,0.0001419182,0.00002225629,0.0006240262],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09718513,"threshold_uncertainty_score":0.430005,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2726357279","doi":"10.1158/1078-0432.ccr-17-0595","title":"Cancer Surveillance in Gorlin Syndrome and Rhabdoid Tumor Predisposition Syndrome","year":2017,"lang":"en","type":"review","venue":"Clinical Cancer Research","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":187,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute for Health and Care Research","keywords":"Cancer; Medicine; Pathology; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.3089927966369647,"gpt":0.5738066049425926,"spread":0.2648138083056279,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002902547,0.0004133868,0.001605978,0.0001638665,0.0002171026,0.0001269277,0.0007491541,0.0006359455,0.00008140788],"category_scores_gemma":[0.0004472677,0.0003273432,0.0002968175,0.0002377093,0.0006776931,0.000009353008,0.0004589208,0.001362027,0.00002071653],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000221378,"about_ca_system_score_gemma":0.002038498,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001027071,"about_ca_topic_score_gemma":0.002211174,"domain_scores_codex":[0.9956346,0.0008528002,0.0009539102,0.001313435,0.0005242673,0.0007210188],"domain_scores_gemma":[0.9977455,0.0002627123,0.000368619,0.001075797,0.0002769128,0.0002704583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002299955,0.000159117,0.003301534,0.01069364,0.0003217385,0.0004212669,0.00000952157,0.00002654556,0.0000171838,0.000005296968,0.001922894,0.9828913],"study_design_scores_gemma":[0.001090305,0.000852005,0.003489443,0.01775312,0.0001057698,0.0004648841,0.000009773928,0.00006584675,0.000006663569,0.00003107437,0.9754383,0.0006928109],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.05532043,0.9427202,0.000005902288,0.000128377,0.0003428037,0.0009671419,0.0003249964,0.00001398209,0.0001761251],"genre_scores_gemma":[0.01917792,0.9775986,0.00004438727,0.00004209563,0.0005338917,0.001091889,0.0001714401,0.00009713574,0.001242647],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9821985,"threshold_uncertainty_score":0.9999179,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2071710018","doi":"10.1097/mph.0b013e3181b258a9","title":"Childhood Atypical Teratoid Rhabdoid Tumor of the Central Nervous System","year":2009,"lang":"en","type":"review","venue":"Journal of Pediatric Hematology/Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; McMaster University","funders":"","keywords":"Medicine; Confidence interval; Atypical teratoid rhabdoid tumor; Chemotherapy; Multimodal therapy; Clinical trial; Internal medicine; Young adult; Central nervous system; Oncology; Pediatrics; Surgery","retraction":null,"screen_n_in":null,"score":{"opus":0.01472204053757969,"gpt":0.3012276476288156,"spread":0.2865056070912359,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006609675,0.0004828887,0.002728904,0.0001967141,0.00009540305,0.00001389954,0.001021664,0.001114845,0.00001580037],"category_scores_gemma":[0.0003872141,0.0003032304,0.00152985,0.0003245894,0.0001409227,0.000005210685,0.0002055524,0.0009578373,0.000008419909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002726659,"about_ca_system_score_gemma":0.003902514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003151134,"about_ca_topic_score_gemma":0.000004308123,"domain_scores_codex":[0.9957277,0.0007864644,0.002226959,0.0003890547,0.0003232723,0.000546605],"domain_scores_gemma":[0.99537,0.0001602065,0.003402898,0.0005615003,0.0002863733,0.0002190314],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003912463,0.00176955,0.000673325,0.02076675,0.001701682,0.0009063242,0.0002660403,0.0001028219,0.0002116448,0.0005302869,0.0641425,0.9085378],"study_design_scores_gemma":[0.000979873,0.001444166,0.0001478345,0.002058592,0.002546421,0.02695183,0.00008772416,0.000008709882,0.0001363189,0.00002976912,0.9651626,0.0004461925],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.008693785,0.9883994,0.0001426132,0.000103613,0.001792974,0.000403164,0.00003615147,0.00001013898,0.0004181949],"genre_scores_gemma":[0.01735794,0.9777766,0.0007841103,0.0001368085,0.003811205,0.00001332276,0.00001580464,0.00005505305,0.00004918388],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9080917,"threshold_uncertainty_score":0.999942,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2144143639","doi":"10.1016/s1470-2045(15)70114-2","title":"Molecular subgroups of atypical teratoid rhabdoid tumours in children: an integrated genomic and clinicopathological analysis","year":2015,"lang":"en","type":"article","venue":"The Lancet Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":182,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; McGill University; London Health Sciences Centre; Vancouver General Hospital; Children’s Health Research Institute; Children's Hospital of Eastern Ontario; Ottawa Hospital; Centre Hospitalier Universitaire Sainte-Justine; University of Alberta; University of Ottawa; University of British Columbia; Alberta Hospital Edmonton; University of Calgary; Hospital for Sick Children; Western University; McGill University and Génome Québec Innovation Centre; University of Toronto; University of Alberta Hospital; Montreal Children's Hospital; Children's & Women's Health Centre of British Columbia; Alberta Children's Hospital; SickKids Foundation; McMaster University; Université de Montréal","funders":"National Cancer Institute; Genome Canada","keywords":"Biology; Atypical teratoid rhabdoid tumor; Immunohistochemistry; Pathology; Chemotherapy; Cancer research; Oncology; Medicine; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.03045559797632303,"gpt":0.3249774823903661,"spread":0.2945218844140431,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008301784,0.0001162337,0.000414798,0.00005142825,0.00002076749,0.000008533096,0.0002420306,0.0001922341,0.000006652539],"category_scores_gemma":[0.00009094203,0.00008005064,0.00007023103,0.0001778461,0.0002063967,0.000002351971,0.0001071552,0.0001797883,0.00000162764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003030395,"about_ca_system_score_gemma":0.0001198204,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007265143,"about_ca_topic_score_gemma":0.0001992022,"domain_scores_codex":[0.9987411,0.000423151,0.0002730105,0.0002862319,0.00007129937,0.0002051878],"domain_scores_gemma":[0.9993992,0.00001913468,0.0001023764,0.0003470392,0.00005619279,0.00007601801],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001340455,0.0002761307,0.8007901,0.00000706969,0.0001448137,0.00001913884,0.0003009302,0.005293061,0.184191,0.0002089221,0.0002944442,0.007133966],"study_design_scores_gemma":[0.00401533,0.002559314,0.9673156,0.00001141576,0.0003055526,0.0001946221,0.0004114078,0.00622435,0.01592123,0.000816318,0.001873357,0.0003514701],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972425,0.001127723,0.0009673289,0.0003181386,0.00004153262,0.0001141874,0.00001722424,0.000009739704,0.0001617013],"genre_scores_gemma":[0.9976315,0.0002291109,0.001335856,0.0005231804,0.0001424051,0.00001213924,0.0001077745,0.000009335833,0.000008719917],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1682697,"threshold_uncertainty_score":0.326437,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090004244","doi":"10.1086/302833","title":"Familial Posterior Fossa Brain Tumors of Infancy Secondary to Germline Mutation of the hSNF5 Gene","year":2000,"lang":"en","type":"article","venue":"The American Journal of Human Genetics","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":174,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Cancer Institute; Medical Research Council Canada","keywords":"Choroid plexus; Biology; Tumor suppressor gene; SMARCB1; Loss of heterozygosity; Germline mutation; Medulloblastoma; Pathology; Germline; Frameshift mutation; Brachyury; Exon; Cancer research; Mutation; Genetics; Gene; Medicine; Carcinogenesis; Central nervous system; Allele; Epigenetics; Endocrinology","retraction":null,"screen_n_in":null,"score":{"opus":0.006698181182359682,"gpt":0.2666360348141593,"spread":0.2599378536317996,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000246343,0.0001092142,0.0002406353,0.00003455791,0.0000619318,0.000007424441,0.0004000395,0.00002653367,0.00004734944],"category_scores_gemma":[0.00002828961,0.00007115676,0.0001626689,0.0001223948,0.0002634091,0.000002207095,0.00006073323,0.0001088358,9.358571e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000872979,"about_ca_system_score_gemma":0.0001501937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003096072,"about_ca_topic_score_gemma":0.00001688023,"domain_scores_codex":[0.9989287,0.0001139679,0.0005137639,0.000102224,0.0002086644,0.0001326717],"domain_scores_gemma":[0.9988666,0.00001656605,0.0005546796,0.0003369442,0.0001719227,0.00005324022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001841254,0.00003415685,0.0006709261,0.0000116019,0.00006013074,0.000001576624,0.0006538216,0.005434964,0.9259707,0.000001229679,0.0003563904,0.06662037],"study_design_scores_gemma":[0.000878684,0.003110735,0.07705139,0.00009835177,0.00008779961,0.000280202,0.0005971758,0.0001592375,0.9162403,0.0001935033,0.001107262,0.0001953406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985036,0.0007155219,0.0001765236,0.0002913028,0.00006119221,0.00009495784,0.00002605054,0.000001455597,0.0001293902],"genre_scores_gemma":[0.997938,0.0001097138,0.0008902909,0.0006008869,0.0002466764,0.000001275719,0.000004179697,0.00001748173,0.0001915009],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07638047,"threshold_uncertainty_score":0.2901688,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3011022719","doi":"10.1158/1078-0432.ccr-19-3797","title":"Small-Cell Carcinoma of the Ovary, Hypercalcemic Type–Genetics, New Treatment Targets, and Current Management Guidelines","year":2020,"lang":"en","type":"review","venue":"Clinical Cancer Research","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":170,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill Genome Centre; Jewish General Hospital; Princess Margaret Cancer Centre; BC Cancer Agency; Spinal Cord Injury BC; McGill University; McGill University Health Centre","funders":"H2020 European Research Council; National Cancer Institute; Canadian Institutes of Health Research; Cancer Research UK; U.S. Department of Defense","keywords":"SMARCA4; Biology; Cancer; Ovarian cancer; Chromatin remodeling; Cancer research; Genetics; Epigenetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.4798473550500737,"gpt":0.5424238971364708,"spread":0.06257654208639707,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006219387,0.0003380618,0.0009198988,0.0000511183,0.00009099534,0.00002599994,0.0006646242,0.0003192931,0.00003874642],"category_scores_gemma":[0.0001527437,0.0002137933,0.0005223676,0.0002695818,0.000256935,0.000001077835,0.0008537249,0.0004901122,0.00001397079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001154696,"about_ca_system_score_gemma":0.001803532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001966993,"about_ca_topic_score_gemma":0.00006300456,"domain_scores_codex":[0.9969604,0.0004545896,0.001008284,0.0008361047,0.0003621202,0.0003785148],"domain_scores_gemma":[0.9982728,0.00008992202,0.0002298219,0.0008492163,0.0003029486,0.0002552669],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005013038,0.00007963734,0.0001584214,0.003299048,0.0001551108,0.000002886566,0.00001005201,0.000005736992,0.00003212351,0.000004905679,0.02109366,0.9751083],"study_design_scores_gemma":[0.0005801505,0.0004523343,0.00004675093,0.001467192,0.0003583132,0.000003328403,0.00001137599,0.00004067956,0.0002121044,0.00002586579,0.9965931,0.0002088702],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002322939,0.9954073,0.00002308073,0.0002453539,0.0006749424,0.0009934165,0.00007676059,0.000005983751,0.0002502259],"genre_scores_gemma":[0.0005237276,0.9954386,0.0003872609,0.00005991781,0.00149975,0.0001024327,0.00007389541,0.00006076645,0.001853687],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9754994,"threshold_uncertainty_score":0.8718239,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3157618208","doi":"10.1038/s41388-021-01781-x","title":"Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy","year":2021,"lang":"en","type":"review","venue":"Oncogene","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":165,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium","funders":"Genentech; Else Kröner-Fresenius-Stiftung; Deutsche Forschungsgemeinschaft; Wellcome Trust; Deutschen Konsortium für Translationale Krebsforschung; Ontario Genomics Institute; European Federation of Pharmaceutical Industries and Associations; Merck KGaA; Ontario Genomics; Genome Canada; Fundação de Amparo à Pesquisa do Estado de São Paulo; McGill University; Bayer; Pfizer","keywords":"SWI/SNF; Biology; Chromatin remodeling; Chromatin; Epigenetics; SMARCA4; Synthetic lethality; Transcription factor; Genetics; Gene; Chromatin structure remodeling (RSC) complex; SMARCB1; Mutant; Cancer research; Cell biology","retraction":null,"screen_n_in":null,"score":{"opus":0.1212451964649875,"gpt":0.3982862340182772,"spread":0.2770410375532897,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003067456,0.0003949548,0.001332647,0.00004917464,0.0001049713,0.00002635893,0.0002823627,0.0003357383,0.00006174125],"category_scores_gemma":[0.00006807818,0.0003462268,0.000766382,0.0001094884,0.00009077923,0.000002706869,0.00008401926,0.0001237976,0.000001120122],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000617647,"about_ca_system_score_gemma":0.0006789725,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007263538,"about_ca_topic_score_gemma":0.0000281043,"domain_scores_codex":[0.9980891,0.000126777,0.0007421346,0.0005712453,0.0001689195,0.000301797],"domain_scores_gemma":[0.998606,0.00008676971,0.0004756689,0.0005340436,0.000238553,0.00005901135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001263173,0.00004819699,8.194214e-7,0.007360444,0.0003414722,6.596268e-7,0.00006555865,0.0005055275,0.0287202,0.00003200502,0.000701152,0.9622113],"study_design_scores_gemma":[0.0003501746,0.00011895,3.458365e-8,0.00642402,0.000194631,0.00001376857,0.00008827689,0.0002981775,0.04010479,0.000044189,0.9519427,0.0004202349],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003069398,0.9907101,0.004827723,0.00001088294,0.0002564126,0.0005518499,0.0003668952,0.00001734093,0.000189379],"genre_scores_gemma":[0.0003410296,0.9909662,0.005471224,0.00004492732,0.001005549,0.0004299618,0.0009399765,0.0001094878,0.0006916345],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9617911,"threshold_uncertainty_score":0.999899,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118732961","doi":"10.1007/s00401-014-1291-1","title":"CNS-PNETs with C19MC amplification and/or LIN28 expression comprise a distinct histogenetic diagnostic and therapeutic entity","year":2014,"lang":"en","type":"article","venue":"Acta Neuropathologica","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":159,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Children's Hospital; University of Toronto; SickKids Foundation; University of Calgary; Children's Hospital of Eastern Ontario; Hospital for Sick Children","funders":"National Cancer Institute; Canadian Institutes of Health Research; Brain Tumour Charity; Cancer Research UK","keywords":"LIN28; Biology; Pathology; Immunohistochemistry; Cerebrum; microRNA; Neuropil; Central nervous system; Medicine; Neuroscience; Gene; Immunology; Transcription factor; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01509625434371525,"gpt":0.2385908125413009,"spread":0.2234945581975856,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001250707,0.0001610503,0.0001408754,0.00001917978,0.0001345914,0.00003476295,0.0001112282,0.00008239751,0.00001024039],"category_scores_gemma":[0.0002603204,0.0001073881,0.00002294338,0.00004165901,0.0001413675,0.000002936242,0.00009930052,0.00008469234,0.000002323267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005619136,"about_ca_system_score_gemma":0.00001616425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004388023,"about_ca_topic_score_gemma":0.000008094429,"domain_scores_codex":[0.9989965,0.0001566249,0.0001443516,0.0004458509,0.00009285456,0.0001638338],"domain_scores_gemma":[0.999364,0.0000929927,0.00009370348,0.0003318776,0.00004077642,0.00007663341],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001689543,0.00008136797,0.01469101,0.0000402717,0.00000584459,0.00001023366,0.00006074056,0.00002893462,0.966239,0.00001041295,0.0001366355,0.01852664],"study_design_scores_gemma":[0.00259003,0.004353718,0.837169,0.000175181,0.0001793678,0.0006635533,0.00006317435,0.003437946,0.1050982,0.0003815635,0.04486438,0.001023872],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942445,0.0009551311,0.004247386,0.0001280404,0.00004978062,0.000171926,0.000006444619,0.00003041796,0.0001663659],"genre_scores_gemma":[0.9979765,0.0007266751,0.0006816019,0.0003557997,0.00007934517,0.00003275981,0.00002786685,0.00001970323,0.00009970211],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8611407,"threshold_uncertainty_score":0.437916,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2520557077","doi":"10.1016/j.ajhg.2016.08.001","title":"De Novo Mutations in CHD4 , an ATP-Dependent Chromatin Remodeler Gene, Cause an Intellectual Disability Syndrome with Distinctive Dysmorphisms","year":2016,"lang":"en","type":"article","venue":"The American Journal of Human Genetics","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":154,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Wellcome Trust","keywords":"Chromodomain; Biology; Chromatin remodeling; Genetics; Chromatin; SMARCA4; Missense mutation; Gene; Helicase; Mutation","retraction":null,"screen_n_in":null,"score":{"opus":0.01782115454085796,"gpt":0.2871012201531007,"spread":0.2692800656122428,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003894111,0.0001882292,0.0002679095,0.0000449988,0.0001143537,0.00003275604,0.0004126604,0.00004430954,0.00004851063],"category_scores_gemma":[0.00005589559,0.0001112547,0.00007022367,0.0001175706,0.000733065,0.00001194687,0.00004936484,0.0001525994,0.0000021465],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001175966,"about_ca_system_score_gemma":0.0001899663,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008086978,"about_ca_topic_score_gemma":0.000394115,"domain_scores_codex":[0.9985469,0.0002685925,0.000415373,0.0002524885,0.0002422244,0.0002744045],"domain_scores_gemma":[0.9987647,0.00004821931,0.0003690192,0.0005054026,0.0001600331,0.0001526182],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009084838,0.000659178,0.03854199,0.00001502632,0.0002974529,0.0001265158,0.00442392,0.02420107,0.8825443,0.00001309551,0.00003626213,0.0482327],"study_design_scores_gemma":[0.006852217,0.03759328,0.6515192,0.0004140386,0.0006319275,0.01287204,0.00839739,0.007297998,0.2688179,0.003298736,0.0002604502,0.002044768],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861507,0.0001384384,0.01337248,0.0001361418,0.00003050099,0.0001133068,0.00002472304,0.000006615396,0.00002705595],"genre_scores_gemma":[0.9963253,0.00007812539,0.003242026,0.00009894927,0.0001558499,0.000005256803,0.00001153498,0.00003247416,0.00005049446],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6137264,"threshold_uncertainty_score":0.4536836,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2227934581","doi":"10.1038/modpathol.2015.155","title":"Loss of switch/sucrose non-fermenting complex protein expression is associated with dedifferentiation in endometrial carcinomas","year":2016,"lang":"en","type":"article","venue":"Modern Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":153,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Calgary Laboratory Services; Ottawa Hospital; Royal Alexandra Hospital; University of Alberta; Vancouver General Hospital; Royal Jubilee Hospital; University of British Columbia","funders":"National Cancer Institute; Alberta Cancer Foundation; Royal Alexandra Hospital Foundation; Cancer Research Society; Calgary Laboratory Services","keywords":"SMARCA4; SMARCB1; Immunohistochemistry; ARID1A; Biology; Cancer research; Pathology; Medicine; Epigenetics; Chromatin remodeling; Mutation; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01727567280712791,"gpt":0.2480197251099152,"spread":0.2307440523027873,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001945547,0.0001305289,0.0002243379,0.00007652426,0.00003504882,0.000005376082,0.0001104737,0.0001790496,0.00002119992],"category_scores_gemma":[0.0001048555,0.00009139651,0.00005240414,0.00007897033,0.00007064013,0.00000457987,0.00007887713,0.00005784568,0.000001477047],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003455731,"about_ca_system_score_gemma":0.00004673968,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001689482,"about_ca_topic_score_gemma":0.00004520267,"domain_scores_codex":[0.9989442,0.00009261243,0.0002701615,0.0003325789,0.000129422,0.0002310207],"domain_scores_gemma":[0.9994321,0.00001826022,0.0001969235,0.0002378055,0.00008310985,0.00003181152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002156425,0.00008392829,0.03119,0.0000146389,0.00001520602,0.000009110565,0.0002128586,0.00003563983,0.9659726,0.000001898768,0.00002363975,0.00222484],"study_design_scores_gemma":[0.004300316,0.0003231314,0.04172118,0.0001501798,0.00001316497,0.00001124148,0.00001599911,0.001246279,0.9517922,0.0002421973,0.00001995261,0.0001641049],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9728635,0.00007947769,0.02660763,0.00004935634,0.00004545086,0.0002315746,0.00003489952,0.000008374721,0.00007971877],"genre_scores_gemma":[0.9991181,0.00001207933,0.0004706187,0.0000361013,0.00006057378,0.00003975671,0.00006379955,0.00001958383,0.0001793147],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02625465,"threshold_uncertainty_score":0.3727042,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2335159862","doi":"10.1007/s00401-016-1574-9","title":"Poorly differentiated chordoma with SMARCB1/INI1 loss: a distinct molecular entity with dismal prognosis","year":2016,"lang":"en","type":"letter","venue":"Acta Neuropathologica","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":153,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Medical Research Council; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"SMARCB1; Chordoma; Biology; Pathology; Medicine; Genetics; Transcription factor; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.00812429266514003,"gpt":0.2079436322415689,"spread":0.1998193395764288,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001218861,0.0008157109,0.0006046235,0.00008084018,0.0001723389,0.0001292869,0.0007355967,0.0007496969,0.00007771018],"category_scores_gemma":[0.00008786906,0.0004784874,0.0002413585,0.0001596478,0.0004369145,0.000008346135,0.0003173726,0.0009000989,0.00002025788],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003297803,"about_ca_system_score_gemma":0.0001399316,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001351912,"about_ca_topic_score_gemma":0.0000102477,"domain_scores_codex":[0.996385,0.0003687255,0.0003907974,0.001524821,0.0005056842,0.0008249929],"domain_scores_gemma":[0.9981064,0.00003626376,0.0004063332,0.001120067,0.0002025929,0.0001283772],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001730175,0.0005076298,0.02570336,0.0006383925,0.0007176187,0.0155004,0.00005792762,0.000007824766,0.7228864,0.000006737015,0.226555,0.005688457],"study_design_scores_gemma":[0.005900464,0.01028909,0.03047678,0.001173394,0.001347307,0.003648719,0.00001733373,0.00005328838,0.1059084,0.0001305959,0.8363779,0.004676797],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9521677,0.0002543641,0.00148036,0.0439407,0.0001939581,0.0006467903,0.0003042369,0.0001443755,0.0008675176],"genre_scores_gemma":[0.9432924,0.0001539321,0.0003505223,0.05235169,0.001300199,0.0002256198,0.001109381,0.0001857149,0.001030561],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.616978,"threshold_uncertainty_score":0.9997667,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3094674567","doi":"10.1038/s41467-020-19328-1","title":"Role of specialized composition of SWI/SNF complexes in prostate cancer lineage plasticity","year":2020,"lang":"en","type":"article","venue":"Nature Communications","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; European Commission; Memorial Sloan-Kettering Cancer Center; University of Bern; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Cancer Institute; National Institutes of Health; National Science Foundation","keywords":"Prostate cancer; Lineage (genetic); Biology; Composition (language); Cancer; Evolutionary biology; Computational biology; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.0169005690853698,"gpt":0.3056622974274401,"spread":0.2887617283420703,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004657093,0.00006473283,0.0001384095,0.00002045628,0.00003271698,0.000003566924,0.0003179722,0.0001020601,0.00001148083],"category_scores_gemma":[0.00004674322,0.00006515847,0.00004243299,0.00012069,0.0000870359,0.000002381777,0.000142535,0.0002005205,5.846645e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001059715,"about_ca_system_score_gemma":0.00006344041,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001042883,"about_ca_topic_score_gemma":0.0005498267,"domain_scores_codex":[0.9994732,0.00005919336,0.0002217481,0.0001057083,0.00007320935,0.00006697957],"domain_scores_gemma":[0.9993783,0.00002587887,0.000121369,0.0003215223,0.0001256109,0.00002727212],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009174617,0.00008031907,0.002980173,0.00002871315,0.00002026269,5.429191e-8,0.0002621318,0.0009214848,0.9943351,0.0003467508,0.000412684,0.0005205685],"study_design_scores_gemma":[0.001039008,0.0001063392,0.01371858,0.00009184983,0.00003078193,0.00000100279,0.0002040983,0.01308779,0.9571433,0.00007957054,0.01434692,0.0001507643],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894747,0.008445108,0.00010911,0.0008210687,0.00002270167,0.0001680409,0.0002354827,0.00000779461,0.0007160298],"genre_scores_gemma":[0.9953362,0.001446848,0.002679592,0.0001759115,0.00004912037,0.00001533689,0.0002827389,0.000007848656,0.000006396905],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03719182,"threshold_uncertainty_score":0.2657085,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2993515799","doi":"10.1038/s41586-019-1815-x","title":"The molecular landscape of ETMR at diagnosis and relapse","year":2019,"lang":"en","type":"article","venue":"Nature","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":146,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children; University of Calgary; McGill University","funders":"National Center for Advancing Translational Sciences; National Institute of Environmental Health Sciences; National Cancer Institute; National Institutes of Health; Deutsche Krebshilfe; Bundesministerium für Bildung und Forschung; Russian Science Foundation; BeiGene; Deutsches Krebsforschungszentrum; Max and Minnie Tomerlin Voelcker Fund; Cancer Prevention and Research Institute of Texas; AstraZeneca","keywords":"Somatic cell; Genome instability; Germline; Biology; Mutation; Cancer research; Genetics; Genome; Chromosome instability; Gene; DNA; DNA damage; Chromosome","retraction":null,"screen_n_in":null,"score":{"opus":0.002584305990546613,"gpt":0.2287256412165645,"spread":0.2261413352260179,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000705127,0.00005392299,0.00005641263,0.000006237568,0.00003175376,0.000006041589,0.00007740073,0.0003679741,0.00001489941],"category_scores_gemma":[0.00003072518,0.00003571604,0.00003742439,0.00002817013,0.00002253184,6.326637e-7,0.00006579125,0.0001914201,0.00000355479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003554735,"about_ca_system_score_gemma":0.00001331294,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002328949,"about_ca_topic_score_gemma":0.000007821269,"domain_scores_codex":[0.9996604,0.00001431787,0.00006776842,0.0001073703,0.00007434215,0.00007574716],"domain_scores_gemma":[0.9996902,0.00001322541,0.0000357799,0.0002071564,0.00003385561,0.000019757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001532234,0.00002444715,0.03970244,0.00006396152,0.00008472452,0.000001704613,0.00007971545,0.0001765137,0.9229943,0.0004744063,0.02912524,0.007119371],"study_design_scores_gemma":[0.0007477306,0.0001762189,0.005738488,0.00003912557,0.00002493348,0.00001531797,0.00008758099,0.0003022724,0.7192739,0.0001501192,0.2732729,0.0001714668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9672042,0.03096327,0.000006281696,0.0002495254,0.0001013358,0.00006451526,0.000007217398,0.000003180688,0.001400494],"genre_scores_gemma":[0.9968449,0.001683474,0.00008558788,0.0002965493,0.00003658695,0.000005963702,0.00001604229,0.000007732941,0.001023184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2441477,"threshold_uncertainty_score":0.2838153,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2058346860","doi":"10.1016/j.ygyno.2005.10.024","title":"Small cell of the ovary, hypercalcemic type—Analysis of combined experience and recommendation for management. A GCIG study","year":2005,"lang":"en","type":"article","venue":"Gynecologic Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"","keywords":"Medicine; Radiation therapy; Stage (stratigraphy); Abdomen; Surgery; Chemotherapy; Malignancy; Pelvis; Radiology; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.02960490528373416,"gpt":0.3068917730046605,"spread":0.2772868677209264,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002291495,0.0000791386,0.0002215753,0.00004730237,0.00004722527,0.000002479448,0.0001561706,0.00009931286,0.00004923197],"category_scores_gemma":[0.00005738056,0.00005909417,0.00007794321,0.0001699794,0.00007055305,0.000001682786,0.000128548,0.000037207,4.06424e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002933152,"about_ca_system_score_gemma":0.00003264835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001560566,"about_ca_topic_score_gemma":0.0001847871,"domain_scores_codex":[0.999294,0.00008367724,0.0002516753,0.0002167856,0.00003973438,0.0001140907],"domain_scores_gemma":[0.99946,0.00006242377,0.0001706711,0.0002137618,0.00007409067,0.00001907962],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001672064,0.005287852,0.1655344,0.0002448432,0.003096119,0.0000020897,0.004261821,0.007343932,0.5833822,0.0002367561,0.003353114,0.2255848],"study_design_scores_gemma":[0.02268223,0.02815359,0.4739766,0.0000354871,0.008644725,0.00001514051,0.01806196,0.04630829,0.2556914,0.0006510552,0.144393,0.001386547],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972852,0.00009607489,0.0005234931,0.0001681599,0.0001114382,0.0004342542,0.000009150033,0.000004331403,0.00136792],"genre_scores_gemma":[0.9968798,0.0001197643,0.002327319,0.0002229595,0.00001985897,0.00006792045,0.00003021815,0.000005144081,0.0003270005],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3276908,"threshold_uncertainty_score":0.240979,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2157829181","doi":"10.1097/pas.0b013e318186235b","title":"Embryonal Tumors With Abundant Neuropil and True Rosettes","year":2009,"lang":"en","type":"article","venue":"The American Journal of Surgical Pathology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":144,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"National Institute of Neurological Disorders and Stroke","keywords":"Neuropil; Pathology; Biology; Lesion; Central nervous system; Anatomy; Neoplasm; Midbrain; Medicine; Neuroscience","retraction":null,"screen_n_in":null,"score":{"opus":0.004797926582563189,"gpt":0.2334008087244566,"spread":0.2286028821418934,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002336804,0.00010118,0.0002376463,0.00002472534,0.00005600558,0.00001207956,0.0001445083,0.00002308336,0.000005680068],"category_scores_gemma":[0.00001853935,0.00005524058,0.00006431783,0.00007008194,0.0004399788,0.000002562738,0.00002376336,0.0001643016,8.317156e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004849984,"about_ca_system_score_gemma":0.00005211024,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000257691,"about_ca_topic_score_gemma":7.940982e-7,"domain_scores_codex":[0.9992559,0.0001379605,0.0002087047,0.0001280454,0.000109911,0.000159466],"domain_scores_gemma":[0.9994357,0.00003313251,0.0002508996,0.0001390068,0.00006532127,0.00007589323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00684031,0.0003578869,0.008280142,0.00001454319,0.0001856777,0.00350727,0.0005012333,0.002640688,0.7028868,0.0005125328,0.001837696,0.2724352],"study_design_scores_gemma":[0.01372435,0.08029433,0.4652555,0.0003226881,0.0004670948,0.2910508,0.002358448,0.001129295,0.06354735,0.004656472,0.07511288,0.002080777],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963481,0.000782403,0.0003524127,0.002244364,0.00003303876,0.00002658787,0.000002437106,0.000003274375,0.0002073785],"genre_scores_gemma":[0.9976225,0.0005625621,0.0004794143,0.001034362,0.0002412025,5.29197e-7,0.000001517241,0.000008091224,0.00004981074],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6393394,"threshold_uncertainty_score":0.2252645,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2077399308","doi":"10.1007/s00401-012-1068-3","title":"LIN28A immunoreactivity is a potent diagnostic marker of embryonal tumor with multilayered rosettes (ETMR)","year":2012,"lang":"en","type":"article","venue":"Acta Neuropathologica","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":141,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"Stichting Kinderen Kankervrij; Brain Tumour Charity","keywords":"Immunohistochemistry; Atypical teratoid rhabdoid tumor; Pathology; Carcinogenesis; Biology; microRNA; Brain tumor; Pathological; Tumor marker; Cancer research; Medicine; Gene; Cancer; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01000737133288018,"gpt":0.2295531785554951,"spread":0.219545807222615,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002008458,0.000207422,0.0002144619,0.00002557047,0.0000670868,0.00001269316,0.0001911772,0.00007495027,0.00004248149],"category_scores_gemma":[0.0003676902,0.0001508526,0.0001050897,0.00007337291,0.0001217626,0.000008415758,0.0001420501,0.0001441891,0.000008798479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009498593,"about_ca_system_score_gemma":0.00003956906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001150903,"about_ca_topic_score_gemma":0.000001126421,"domain_scores_codex":[0.9988273,0.0001243405,0.0002139184,0.0003274664,0.0001702467,0.0003366767],"domain_scores_gemma":[0.9991286,0.000086999,0.0001710435,0.0004429243,0.00008019571,0.0000901715],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002363863,0.0003169973,0.03809069,0.00002381885,0.00002670059,0.00002985391,0.00006452598,0.00003705234,0.9587668,0.000002278948,0.0006853982,0.001719503],"study_design_scores_gemma":[0.0008688692,0.000831712,0.5367184,0.00004772434,0.00007133943,0.0005311682,0.00005862804,0.0002388306,0.4555153,0.00001202028,0.004705528,0.000400498],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979917,0.0007771197,0.0001396062,0.0001155353,0.0001078116,0.0001654045,0.0000597621,0.00002207505,0.0006210004],"genre_scores_gemma":[0.9979764,0.0001961319,0.0007618882,0.0007099843,0.0001473213,0.0000295228,0.00002844207,0.00002857174,0.0001217184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5032516,"threshold_uncertainty_score":0.615159,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2299654235","doi":"10.1016/j.ccell.2016.02.009","title":"Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways","year":2016,"lang":"en","type":"article","venue":"Cancer Cell","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":138,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; SickKids Foundation; University of British Columbia; Hospital for Sick Children; Canada's Michael Smith Genome Sciences Centre","funders":"National Cancer Institute; National Institutes of Health; U.S. Department of Health and Human Services; BC Cancer Foundation; Genome Science Institute, Boston University; University of British Columbia; BC Cancer Agency; Canada Research Chairs; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre","keywords":"Biology; Transcriptome; microRNA; SMARCB1; DNA methylation; Epigenetics; Genome; RNA-Seq; Histone; Gene expression profiling; Genetics; Computational biology; Deep sequencing; Gene; Cancer research; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.01271779989889071,"gpt":0.2218655953229926,"spread":0.2091477954241019,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000909725,0.0001555127,0.0001680306,0.00001492583,0.00004942435,0.000007118523,0.0001147369,0.0000982195,0.00005870782],"category_scores_gemma":[0.00001378054,0.0001143874,0.00005702322,0.00003343929,0.0001004185,0.000004466332,0.00007596851,0.00002934105,0.00000273265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005887033,"about_ca_system_score_gemma":0.0001957411,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004615949,"about_ca_topic_score_gemma":0.00007030163,"domain_scores_codex":[0.9990659,0.00002834216,0.0002419414,0.0003369907,0.0001067691,0.0002200588],"domain_scores_gemma":[0.9995494,0.000007437587,0.0001032968,0.0001675715,0.0000860627,0.0000862275],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007573595,0.00002398719,0.009312913,0.00006990336,0.00002604127,0.000003252521,0.00005380751,0.00001119972,0.9865816,0.000001616634,0.0002288519,0.003611086],"study_design_scores_gemma":[0.0007294796,0.00009612653,0.0119694,0.0000777931,0.00001388507,0.000015861,0.0000390369,0.00001414786,0.9849997,0.00002093255,0.00182283,0.0002007859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951219,0.003674566,0.0003593776,0.00002828482,0.0001140283,0.0001596945,0.0001228581,0.0000119826,0.0004073297],"genre_scores_gemma":[0.9975445,0.0009547288,0.0007494668,0.00007087141,0.0001373028,0.00003091935,0.00002844647,0.00002389862,0.0004598162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0034103,"threshold_uncertainty_score":0.4664582,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2066476927","doi":"10.1007/s11060-009-9936-y","title":"Atypical choroid plexus papilloma: clinical experience in the CPT-SIOP-2000 study","year":2009,"lang":"en","type":"article","venue":"Journal of Neuro-Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":138,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"National Cancer Institute","keywords":"Medicine; Etoposide; Vincristine; Carboplatin; Surgery; Chemotherapy; Choroid plexus papilloma; Clinical trial; Radiation therapy; Choroid plexus; Cyclophosphamide; Internal medicine; Cisplatin","retraction":null,"screen_n_in":null,"score":{"opus":0.05731726170428775,"gpt":0.4139481206361482,"spread":0.3566308589318604,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009673993,0.0001390864,0.0003508527,0.00004785294,0.00006053848,0.0000200498,0.0004997441,0.0001928872,0.0000207922],"category_scores_gemma":[0.0004290309,0.00009221869,0.0001782669,0.0001153702,0.00009837329,0.000006851028,0.00005334615,0.0005257484,0.000004568482],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005280379,"about_ca_system_score_gemma":0.0003618796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003966319,"about_ca_topic_score_gemma":0.0000212765,"domain_scores_codex":[0.997843,0.0006033143,0.000822736,0.0002477551,0.0002411496,0.0002420466],"domain_scores_gemma":[0.9990227,0.0001398632,0.0003319255,0.0003042204,0.0001019973,0.0000992607],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005624756,0.008655486,0.06065655,0.00001064861,0.000126555,0.002415128,0.007854518,0.001222596,0.6765999,0.00004409276,0.02371535,0.2130744],"study_design_scores_gemma":[0.01185949,0.0534108,0.4652045,0.00004426053,0.0001352054,0.00481633,0.007322743,0.0005987999,0.006746633,0.00044597,0.4488185,0.0005967512],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963969,0.0006965416,0.0000865301,0.00146721,0.0005272581,0.0001653965,9.452239e-7,0.000003696572,0.0006555462],"genre_scores_gemma":[0.9944608,0.0004489266,0.0003030614,0.003911971,0.0008282457,0.000005052364,0.000001137728,0.000009219356,0.00003162819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6698533,"threshold_uncertainty_score":0.3760569,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2896472010","doi":"10.1038/s41436-018-0330-z","title":"The ARID1B spectrum in 143 patients: from nonsyndromic intellectual disability to Coffin–Siris syndrome","year":2018,"lang":"en","type":"article","venue":"Genetics in Medicine","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa; Hospital for Sick Children; SickKids Foundation; University of Toronto; Université de Montréal; Mount Sinai Hospital; Centre Hospitalier Universitaire Sainte-Justine","funders":"Medical Research Council; ZonMw","keywords":"Coffin; Intellectual disability; Medicine; Spectrum (functional analysis); Pediatrics; Psychiatry; Physics; Anatomy","retraction":null,"screen_n_in":null,"score":{"opus":0.01090762682988596,"gpt":0.2771507628786319,"spread":0.266243136048746,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003998694,0.0001792133,0.0002298439,0.00004301334,0.00007804014,0.00001442949,0.0003799796,0.0001250243,0.0001152161],"category_scores_gemma":[0.0007091378,0.0001330291,0.00003625465,0.0002307962,0.0004503627,0.000001593664,0.0001891364,0.0001677268,0.00004245954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009952719,"about_ca_system_score_gemma":0.00006259511,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005991558,"about_ca_topic_score_gemma":0.004901274,"domain_scores_codex":[0.9984475,0.00008959648,0.0004350853,0.0004613529,0.000219389,0.0003471202],"domain_scores_gemma":[0.9990313,0.0001063029,0.00005643149,0.0006412379,0.00006563601,0.00009909793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002130861,0.001397446,0.632467,0.0001051106,0.0002879457,0.00004790888,0.01109647,0.002387577,0.1532962,0.00007788768,0.06691328,0.1297923],"study_design_scores_gemma":[0.00883151,0.008234409,0.764816,0.0007099597,0.00009013655,0.00005027048,0.00184447,0.00726395,0.0725608,0.004945746,0.1291876,0.00146517],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957206,0.001037623,0.0006489223,0.001179448,0.0006124471,0.0002910507,0.00001907983,0.000008477003,0.00048234],"genre_scores_gemma":[0.9978873,0.0004855066,0.0004054263,0.0005712057,0.0004296988,0.00002364075,0.00006756085,0.00002250102,0.0001072168],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.132349,"threshold_uncertainty_score":0.5424769,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979446605","doi":"10.1182/blood-2012-04-427047","title":"The BAF53a subunit of SWI/SNF-like BAF complexes is essential for hemopoietic stem cell function","year":2012,"lang":"en","type":"article","venue":"Blood","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"National Cancer Institute; National Institute of Neurological Disorders and Stroke; Howard Hughes Medical Institute","keywords":"Haematopoiesis; Stem cell; Biology; Progenitor cell; Cell biology; Embryonic stem cell; Induced pluripotent stem cell; Chromatin remodeling; Chromatin; Genetics; DNA","retraction":null,"screen_n_in":null,"score":{"opus":0.01090185613510583,"gpt":0.2350937376368376,"spread":0.2241918815017317,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000144424,0.00009363589,0.0000933566,0.00001023457,0.0001174747,0.00001342724,0.0001141666,0.00008041256,0.00001710213],"category_scores_gemma":[0.000004851372,0.00007225409,0.0001046302,0.00003529603,0.00004595992,0.000002664472,0.00004160827,0.00003734748,0.000005714438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003687206,"about_ca_system_score_gemma":0.00003389599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001410318,"about_ca_topic_score_gemma":0.000009436499,"domain_scores_codex":[0.9993807,0.00002431128,0.0001618194,0.0001336892,0.00009322208,0.0002062683],"domain_scores_gemma":[0.9995147,0.00002067357,0.00008399315,0.0002595337,0.00007700518,0.00004409821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009228881,0.0002324145,0.0009853982,0.0001018207,0.00008769412,5.615295e-8,0.0001179927,0.00002307664,0.9905068,0.00005996646,0.00533149,0.002461033],"study_design_scores_gemma":[0.001062737,0.0001855023,0.0003574506,0.000009599939,0.0001327427,0.000003583898,0.0002044944,0.000154274,0.9582577,0.00005948209,0.03945637,0.0001160398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914909,0.004306606,0.003073804,0.00004821039,0.0003348616,0.0001560523,0.00003220842,0.000008769958,0.0005485705],"genre_scores_gemma":[0.9978325,0.0001448546,0.000237078,0.0001020796,0.0004079541,0.00002143486,0.00004536168,0.00001736996,0.001191371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03412488,"threshold_uncertainty_score":0.2946436,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}