{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":2735,"total_is_capped":false,"direct_labels_cover":23,"predictions_cover":2735,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"680b118d8028","filters":{"topic":"DNA Repair Mechanisms"}},"results":[{"id":"W2153466677","doi":"10.1101/cshperspect.a012716","title":"DNA Damage Sensing by the ATM and ATR Kinases","year":2013,"lang":"en","type":"review","venue":"Cold Spring Harbor Perspectives in Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1505,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institutes of Health; Fonds de Recherche du Québec - Santé; Massachusetts General Hospital","keywords":"DNA damage; Biology; Cell biology; DNA replication; DNA repair; DNA re-replication; DNA; Eukaryotic DNA replication; Genome instability; DNA-PKcs; Genetics","authors":[{"name":"Alexandre Maréchal","is_ca":false},{"name":"Lili Zou","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02153760415589858,"gpt":0.3031544715266227,"spread":0.2816168673707241,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005067649,0.001151836,0.001039746,0.001762259,0.0004091029,0.001334182,0.001189566,0.001269271,0.003638257],"category_scores_gemma":[0.000339062,0.0003749284,0.0003980184,0.001910129,0.0007270614,0.001949632,0.001127549,0.001881503,0.006277697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009522408,"about_ca_system_score_gemma":0.0009138928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008132503,"about_ca_topic_score_gemma":0.001046311,"domain_scores_codex":[0.9998191,0.00001996977,0.00001892912,0.00004785541,0.0000689217,0.0000252878],"domain_scores_gemma":[0.9998471,0.00002699459,0.00002916454,0.000008540337,0.00005678058,0.00003150418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007493269,0.00005024271,0.000168785,0.006145223,0.00004784979,0.0001992204,0.00005677797,0.0003785034,0.0120886,0.01019835,0.0335948,0.9369967],"study_design_scores_gemma":[0.000005647149,0.00002527116,0.0003151585,0.000439273,0.00002072288,0.0005345389,0.00002284954,0.00004920861,0.001536788,0.00190562,0.9951323,0.00001252852],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001991416,0.9952047,0.0004095232,0.0003919953,0.000292225,0.000004807831,0.00002244158,0.00002034026,0.003454698],"genre_scores_gemma":[0.001386656,0.9955062,0.0004247573,0.0002227064,0.0002109368,0.000008506721,0.00004875071,0.000003857927,0.002187594],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003638257,"threshold_uncertainty_score":0.01217121,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1991841649","doi":"10.1016/s1097-2765(01)00173-3","title":"Interaction of the Fanconi Anemia Proteins and BRCA1 in a Common Pathway","year":2001,"lang":"en","type":"article","venue":"Molecular Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1209,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute","keywords":"FANCD2; FANCA; Fanconi anemia; Biology; DNA repair; Genetics; DNA damage; Nuclear protein; Cancer research; Molecular biology; Cell biology; DNA; Gene; Transcription factor","authors":[{"name":"Irene García-Higuera","is_ca":false},{"name":"Toshiyasu Taniguchi","is_ca":false},{"name":"Shridar Ganesan","is_ca":false},{"name":"M. Stephen Meyn","is_ca":true},{"name":"Cynthia Timmers","is_ca":false},{"name":"James Hejna","is_ca":false},{"name":"Markus Grompe","is_ca":false},{"name":"Alan D. D’Andrea","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005318274518032255,"gpt":0.2139848841268177,"spread":0.2086666096087854,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005453327,0.0004146889,0.0007548418,0.0004197549,0.0007091234,0.001562054,0.000750117,0.001106738,0.001228854],"category_scores_gemma":[0.0007187072,0.0004701272,0.0005772559,0.0002688689,0.0004426143,0.001491948,0.001265165,0.001032707,0.001025514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001130337,"about_ca_system_score_gemma":0.0007076191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005989074,"about_ca_topic_score_gemma":0.0007285213,"domain_scores_codex":[0.9995341,0.0000690946,0.00001930141,0.00009800254,0.0001581508,0.0001213464],"domain_scores_gemma":[0.9995358,0.00006546592,0.00007370353,0.0001051462,0.00009986314,0.0001199843],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004970793,0.00009106323,0.001084383,0.0001593621,0.00004154608,0.0008829042,0.0001328965,0.000666487,0.9665191,0.01850347,0.001246989,0.01017462],"study_design_scores_gemma":[0.00007925409,0.0002516128,0.01215816,0.00006183214,0.0000644866,0.002906362,0.0002017161,0.005442049,0.9473469,0.005181691,0.02625433,0.0000516125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9370313,0.01860975,0.0247246,0.002556984,0.000427463,0.00009742467,0.0004341168,0.0005472596,0.01557105],"genre_scores_gemma":[0.9769897,0.003821578,0.006577777,0.0002848495,0.00005082718,0.00005458059,0.0005429037,0.00003902612,0.01163878],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001562054,"threshold_uncertainty_score":0.008201241,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2041897873","doi":"10.1038/nature02989","title":"Regulation of oxidative stress by ATM is required for self-renewal of haematopoietic stem cells","year":2004,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1159,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Haematopoiesis; Ataxia-telangiectasia; Oxidative stress; Cancer research; Stem cell; Cell biology; DNA damage; Senescence; Biology; Bone marrow failure; Genome instability; Progenitor cell; Telomere; Bone marrow; Reactive oxygen species; Immunology; Genetics; Gene; Endocrinology; DNA","authors":[{"name":"Keisuke Ito","is_ca":false},{"name":"Atsushi Hirao","is_ca":false},{"name":"Fumio Arai","is_ca":false},{"name":"Sahoko Matsuoka","is_ca":false},{"name":"Keiyo Takubo","is_ca":false},{"name":"Isao Hamaguchi","is_ca":false},{"name":"Kana Nomiyama","is_ca":false},{"name":"Kentaro Hosokawa","is_ca":false},{"name":"Kazuhiro Sakurada","is_ca":false},{"name":"Naomi Nakagata","is_ca":false},{"name":"Yasuo Ikeda","is_ca":false},{"name":"Tak W. Mak","is_ca":true},{"name":"Toshio Suda","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005353085118904316,"gpt":0.2369162896624504,"spread":0.2315632045435461,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002295376,0.000270481,0.0002524102,0.0003414457,0.0003125106,0.0006369899,0.0004089466,0.0003143034,0.001597633],"category_scores_gemma":[0.0002938277,0.0002555236,0.0002390123,0.0001784266,0.0002835477,0.0004076759,0.0003824571,0.0005924202,0.0004653108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003499253,"about_ca_system_score_gemma":0.0001887163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002205405,"about_ca_topic_score_gemma":0.0003829309,"domain_scores_codex":[0.9997799,0.00002969814,0.00002708615,0.00004822664,0.00006494867,0.00005018251],"domain_scores_gemma":[0.9997179,0.00004303022,0.0001007763,0.00004591591,0.00003570139,0.00005651039],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002252181,0.00002130951,0.0007433803,0.00003525591,0.000007901364,0.0001161595,0.00001292121,0.00004752144,0.9956836,0.0003294907,0.0001026898,0.002674555],"study_design_scores_gemma":[0.00002238394,0.0001369943,0.02435747,0.000007228866,0.00002335653,0.0006218173,0.00003650454,0.0009452212,0.9697407,0.0004703981,0.003630543,0.000007344987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9869932,0.005079933,0.004538248,0.0004177548,0.0001413801,0.00002548595,0.0004186214,0.0002513759,0.002133935],"genre_scores_gemma":[0.9954681,0.0008291932,0.001374683,0.00006396687,0.00003133382,0.00001517093,0.0004413934,0.00002282345,0.001753171],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001597633,"threshold_uncertainty_score":0.005344629,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078544177","doi":"10.1016/j.cell.2008.12.041","title":"RNF168 Binds and Amplifies Ubiquitin Conjugates on Damaged Chromosomes to Allow Accumulation of Repair Proteins","year":2009,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":915,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"Ubiquitin; Chromatin; Biology; Ubiquitin ligase; Cell biology; DNA repair; Ubiquitin-Protein Ligases; DNA damage; DNA; Genetics; Gene","authors":[{"name":"Carsten Doil","is_ca":false},{"name":"Niels Mailand","is_ca":false},{"name":"Simon Bekker‐Jensen","is_ca":false},{"name":"P Ménard","is_ca":false},{"name":"Dorthe Helena Larsen","is_ca":false},{"name":"Rainer Pepperkok","is_ca":false},{"name":"Jan Ellenberg","is_ca":false},{"name":"Stephanie Panier","is_ca":true},{"name":"Daniel Durocher","is_ca":true},{"name":"Jiří Bártek","is_ca":false},{"name":"Claudia Lukas","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02112667658164142,"gpt":0.2785757368834945,"spread":0.257449060301853,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005564757,0.000676012,0.0005550703,0.0005545539,0.0003538767,0.0006258058,0.0004231153,0.0007942088,0.005589257],"category_scores_gemma":[0.0005369462,0.0004943266,0.0003670569,0.0001580465,0.0003997642,0.0007358585,0.000741231,0.0008838995,0.002706569],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008874235,"about_ca_system_score_gemma":0.0002772734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003944737,"about_ca_topic_score_gemma":0.0009156648,"domain_scores_codex":[0.9996039,0.000045099,0.00002365241,0.0001119079,0.0001418675,0.0000735124],"domain_scores_gemma":[0.9995866,0.00006966369,0.00009642402,0.00006656752,0.00008982814,0.00009090252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008884548,0.00001138698,0.0002290133,0.00004483112,0.000007089498,0.0001260019,0.00001159192,0.00005051171,0.9960155,0.0003614643,0.0001735917,0.002880224],"study_design_scores_gemma":[0.00001096112,0.00007278195,0.001262681,0.000004916726,0.000004472236,0.0003535149,0.00001835872,0.0003379529,0.9936026,0.0001293401,0.004196505,0.000005802624],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9515668,0.007476778,0.02835993,0.0008060679,0.0005043739,0.0001028728,0.0003223222,0.001213944,0.009646887],"genre_scores_gemma":[0.9545875,0.001344754,0.02158667,0.0003078587,0.00009561489,0.00005833127,0.0005807829,0.0002481048,0.02119063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005589257,"threshold_uncertainty_score":0.01869792,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1973030224","doi":"10.1126/science.1150034","title":"Orchestration of the DNA-Damage Response by the RNF8 Ubiquitin Ligase","year":2007,"lang":"en","type":"article","venue":"Science","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":907,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"Cancer Research UK","keywords":"DNA damage; Ubiquitin ligase; G2-M DNA damage checkpoint; DNA repair; Ubiquitin; DNA ligase; Biology; Molecular biology; Cell biology; Ubiquitin-conjugating enzyme; DNA; Cancer research; Biochemistry; Cell cycle checkpoint; Genetics; Cancer; Cell cycle; Gene","authors":[{"name":"Nadine K. Kolas","is_ca":true},{"name":"J. Ross Chapman","is_ca":true},{"name":"Shinichiro Nakada","is_ca":true},{"name":"Jarkko Ylanko","is_ca":true},{"name":"Richard Chahwan","is_ca":true},{"name":"Frédéric D. Sweeney","is_ca":true},{"name":"Stephanie Panier","is_ca":true},{"name":"Megan Mendez","is_ca":true},{"name":"Jan Wildenhain","is_ca":true},{"name":"Timothy M. Thomson","is_ca":true},{"name":"Laurence Pelletier","is_ca":true},{"name":"Stephen P. Jackson","is_ca":true},{"name":"Daniel Durocher","is_ca":true}],"retraction":{"nature":"Expression of concern","openalex_flagged":false},"screen_n_in":null,"score":{"opus":0.007674193642171472,"gpt":0.260494992991673,"spread":0.2528207993495015,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009610031,0.0003065571,0.0001594372,0.0001568812,0.0001571299,0.0002880289,0.0001365794,0.0002232103,0.000751625],"category_scores_gemma":[0.00007854043,0.0001142685,0.0001026843,0.00007054946,0.0001614663,0.0002131894,0.0002045639,0.0001807477,0.0004701508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004600034,"about_ca_system_score_gemma":0.0001576897,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004057666,"about_ca_topic_score_gemma":0.00100631,"domain_scores_codex":[0.9999331,0.00001031987,0.000003208595,0.00001732421,0.00001514356,0.00002087049],"domain_scores_gemma":[0.9999616,0.000003170209,0.00001104631,0.000005912911,0.000006324527,0.00001189067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005979374,0.000007845865,0.0005923437,0.00001756125,0.000002605859,0.00007160169,0.000007316917,0.0001333703,0.9963805,0.0001796756,0.00004620281,0.002501194],"study_design_scores_gemma":[0.00001116697,0.00006982285,0.01189279,0.000004864504,0.000005576735,0.0004280296,0.00003191457,0.002163247,0.9806728,0.0002527236,0.004461603,0.00000541514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904389,0.002867574,0.004334316,0.0001184727,0.00001895105,0.00001424393,0.0001138863,0.0001351396,0.001958518],"genre_scores_gemma":[0.9950694,0.0007432626,0.00188348,0.00002134997,0.000005332541,0.000009084932,0.0001319639,0.00001285967,0.002123151],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000751625,"threshold_uncertainty_score":0.003337562,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146204567","doi":"10.1016/j.molcel.2013.01.001","title":"A Cell Cycle-Dependent Regulatory Circuit Composed of 53BP1-RIF1 and BRCA1-CtIP Controls DNA Repair Pathway Choice","year":2013,"lang":"en","type":"article","venue":"Molecular Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":898,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research; U.S. Bureau of Land Management","keywords":"Biology; RAD51; Homologous recombination; Cell biology; DNA repair; Cell cycle; Non-homologous end joining; DNA damage; Effector; DNA; Cancer research; Molecular biology; Cell; Genetics","authors":[{"name":"Cristina Escribano‐Diaz","is_ca":true},{"name":"Alexandre Orthwein","is_ca":true},{"name":"Amélie Fradet‐Turcotte","is_ca":true},{"name":"Mengtan Xing","is_ca":false},{"name":"Jordan T.F. Young","is_ca":true},{"name":"Jan Tkáč","is_ca":true},{"name":"Michael A. Cook","is_ca":true},{"name":"Adam P. Rosebrock","is_ca":true},{"name":"Meagan Munro","is_ca":true},{"name":"Marella D. Canny","is_ca":true},{"name":"Dongyi Xu","is_ca":false},{"name":"Daniel Durocher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004919235620533953,"gpt":0.1865330503488417,"spread":0.1816138147283077,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002396981,0.0003473304,0.0003842835,0.0003639541,0.0003614939,0.0009157643,0.0005104155,0.000322777,0.001708957],"category_scores_gemma":[0.0004067382,0.0003476852,0.0002254312,0.0001806193,0.0004208957,0.0006991932,0.0004086701,0.000542316,0.0006377104],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009340019,"about_ca_system_score_gemma":0.0004900243,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007009853,"about_ca_topic_score_gemma":0.001310265,"domain_scores_codex":[0.9997874,0.00002315688,0.000007804091,0.00009520822,0.00003337804,0.00005316655],"domain_scores_gemma":[0.9996897,0.00006710279,0.00006459455,0.00003214552,0.00005371291,0.00009268844],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001205313,0.00001221862,0.0004624991,0.00001497943,0.00000466339,0.00004062455,0.00002601735,0.000212844,0.9952682,0.000908656,0.00009798433,0.002830864],"study_design_scores_gemma":[0.00005107704,0.0001506013,0.02045355,0.00001184842,0.00003090675,0.0001659805,0.00007700739,0.01287898,0.9624026,0.001261716,0.002484933,0.0000309051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9657663,0.00174085,0.0263199,0.0003137015,0.0001227439,0.0000536195,0.0003718426,0.0005257962,0.004785273],"genre_scores_gemma":[0.9934592,0.0002910553,0.003800601,0.00007272469,0.00001708641,0.00003781747,0.0001929476,0.00006558478,0.00206294],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001708957,"threshold_uncertainty_score":0.00677669,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2796208126","doi":"10.1016/j.cell.2018.03.039","title":"Pathogenic Germline Variants in 10,389 Adult Cancers","year":2018,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":888,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Human Genome Research Institute","keywords":"Biology; Germline; Genetics; Computational biology; Cancer research; Gene","authors":[{"name":"Kuan‐lin Huang","is_ca":false},{"name":"R. Jay Mashl","is_ca":false},{"name":"Yige Wu","is_ca":false},{"name":"Deborah Ritter","is_ca":false},{"name":"Jiayin Wang","is_ca":false},{"name":"Clara Oh","is_ca":false},{"name":"Marta Paczkowska","is_ca":true},{"name":"Sheila M. Reynolds","is_ca":false},{"name":"Matthew A. Wyczalkowski","is_ca":false},{"name":"Ninad Oak","is_ca":false},{"name":"Adam Scott","is_ca":false},{"name":"Michał Krassowski","is_ca":true},{"name":"Andrew D. Cherniack","is_ca":false},{"name":"Kathleen E. Houlahan","is_ca":true},{"name":"Reyka G. Jayasinghe","is_ca":false},{"name":"Liang-Bo Wang","is_ca":false},{"name":"Daniel Cui Zhou","is_ca":false},{"name":"Di Liu","is_ca":false},{"name":"Song Cao","is_ca":false},{"name":"Young Won Kim","is_ca":false},{"name":"Amanda Koire","is_ca":false},{"name":"Joshua F. McMichael","is_ca":false},{"name":"Vishwanathan Hucthagowder","is_ca":false},{"name":"Tae‐Beom Kim","is_ca":false},{"name":"Abigail Hahn","is_ca":false},{"name":"Chen Wang","is_ca":false},{"name":"Michael D. McLellan","is_ca":false},{"name":"Fahd Al‐Mulla","is_ca":false},{"name":"Kimberly Johnson","is_ca":false},{"name":"Rory Johnson","is_ca":false},{"name":"John A. Demchok","is_ca":true},{"name":"Ina Felau","is_ca":false},{"name":"Melpomeni Kasapi","is_ca":false},{"name":"Martin L. Ferguson","is_ca":false},{"name":"Carolyn M. Hutter","is_ca":false},{"name":"Heidi J. Sofia","is_ca":false},{"name":"Roy Tarnuzzer","is_ca":false},{"name":"Liming Yang","is_ca":false},{"name":"Jean C. Zenklusen","is_ca":false},{"name":"Jiashan Zhang","is_ca":true},{"name":"Sudha Chudamani","is_ca":false},{"name":"Jia Liu","is_ca":false},{"name":"Laxmi Lolla","is_ca":false},{"name":"Rashi Naresh","is_ca":false},{"name":"Todd Pihl","is_ca":false},{"name":"Qiang Sun","is_ca":false},{"name":"Yunhu Wan","is_ca":false},{"name":"Ye Wu","is_ca":false},{"name":"Juok Cho","is_ca":false},{"name":"Timothy Defreitas","is_ca":false},{"name":"Scott Frazer","is_ca":false},{"name":"Nils Gehlenborg","is_ca":false},{"name":"Gad Getz","is_ca":false},{"name":"David I. Heiman","is_ca":false},{"name":"Michael S. Lawrence","is_ca":false},{"name":"Pei Lin","is_ca":false},{"name":"Michael S. Noble","is_ca":false},{"name":"Gordon Saksena","is_ca":false},{"name":"Doug Voet","is_ca":false},{"name":"Hailei Zhang","is_ca":false},{"name":"Brady Bernard","is_ca":false},{"name":"Nyasha Chambwe","is_ca":false},{"name":"Varsha Dhankani","is_ca":false},{"name":"Theo Knijnenburg","is_ca":false},{"name":"Roger Kramer","is_ca":false},{"name":"Kalle Leinonen","is_ca":false},{"name":"Yuexin Liu","is_ca":false},{"name":"Michael B. Miller","is_ca":false},{"name":"Vésteinn Thórsson","is_ca":false},{"name":"Wei Zhang","is_ca":false},{"name":"Rehan Akbani","is_ca":false},{"name":"Bradley M. Broom","is_ca":false},{"name":"Apurva M. Hegde","is_ca":false},{"name":"Zhenlin Ju","is_ca":false},{"name":"Rupa S. Kanchi","is_ca":false},{"name":"Anil Korkut","is_ca":false},{"name":"Jun Li","is_ca":false},{"name":"Han Liang","is_ca":false},{"name":"Shiyun Ling","is_ca":false},{"name":"Wenbin Liu","is_ca":false},{"name":"Yiling Lu","is_ca":false},{"name":"Gordon B. Mills","is_ca":false},{"name":"Kwok-Shing Ng","is_ca":false},{"name":"Arvind Rao","is_ca":false},{"name":"Michael Ryan","is_ca":false},{"name":"Jing Wang","is_ca":false},{"name":"John N. Weinstein","is_ca":false},{"name":"Jiexin Zhang","is_ca":false},{"name":"Adam Abeshouse","is_ca":false},{"name":"Joshua Armenia","is_ca":false},{"name":"Debyani Chakravarty","is_ca":false},{"name":"Walid K. Chatila","is_ca":true},{"name":"Ino de Bruijn","is_ca":false},{"name":"Galen F. Gao","is_ca":false},{"name":"Benjamin E. Gross","is_ca":false},{"name":"Zachary Heins","is_ca":false},{"name":"Ritika Kundra","is_ca":false},{"name":"Konnor La","is_ca":false},{"name":"Marc Ladanyi","is_ca":false},{"name":"Augustin Luna","is_ca":false},{"name":"Moriah G. Nissan","is_ca":false},{"name":"Angelica Ochoa","is_ca":false},{"name":"Sarah Phillips","is_ca":false},{"name":"Ed Reznik","is_ca":false},{"name":"Francisco Sánchez-Vega","is_ca":false},{"name":"Chris Sander","is_ca":false},{"name":"Nikolaus Schultz","is_ca":false},{"name":"Robert P. Sheridan","is_ca":false},{"name":"S. Onur Sumer","is_ca":false},{"name":"Yichao Sun","is_ca":false},{"name":"Barry S. Taylor","is_ca":false},{"name":"Jioajiao Wang","is_ca":false},{"name":"Hongxin Zhang","is_ca":false},{"name":"Pavana Anur","is_ca":false},{"name":"Myron Peto","is_ca":false},{"name":"Paul T. Spellman","is_ca":false},{"name":"Christopher C. Benz","is_ca":false},{"name":"Joshua M. Stuart","is_ca":false},{"name":"Christopher K. Wong","is_ca":false},{"name":"Christina Yau","is_ca":false},{"name":"D. Neil Hayes","is_ca":false},{"name":"Joel S. Parker","is_ca":false},{"name":"Matthew D. Wilkerson","is_ca":false},{"name":"Adrian Ally","is_ca":false},{"name":"Miruna Balasundaram","is_ca":false},{"name":"Reanne Bowlby","is_ca":false},{"name":"Denise Brooks","is_ca":false},{"name":"Rebecca Carlsen","is_ca":false},{"name":"Eric Chuah","is_ca":false},{"name":"Noreen Dhalla","is_ca":false},{"name":"Robert A. Holt","is_ca":false},{"name":"Steven J.M. Jones","is_ca":false},{"name":"Darlene Lee","is_ca":true},{"name":"Yussanne Ma","is_ca":false},{"name":"Marco A. Marra","is_ca":false},{"name":"Michael Mayo","is_ca":false},{"name":"Richard A. Moore","is_ca":false},{"name":"Andrew J. Mungall","is_ca":false},{"name":"Karen Mungall","is_ca":false},{"name":"A. Gordon Robertson","is_ca":false},{"name":"Sara Sadeghi","is_ca":false},{"name":"Jacqueline E. Schein","is_ca":false},{"name":"Payal Sipahimalani","is_ca":false},{"name":"Angela Tam","is_ca":false},{"name":"Nina Thiessen","is_ca":false},{"name":"Kane Tse","is_ca":false},{"name":"Tina Wong","is_ca":false},{"name":"Ashton C. Berger","is_ca":false},{"name":"Rameen Beroukhim","is_ca":false},{"name":"Carrie Cibulskis","is_ca":true},{"name":"Stacey Gabriel","is_ca":true},{"name":"Gavin Ha","is_ca":false},{"name":"Matthew Meyerson","is_ca":false},{"name":"Steven E. Schumacher","is_ca":false},{"name":"Juliann Shih","is_ca":false},{"name":"Melanie H. Kucherlapati","is_ca":false},{"name":"Raju Kucherlapati","is_ca":false},{"name":"Stephen B. Baylin","is_ca":false},{"name":"Leslie Cope","is_ca":false},{"name":"Ludmila Danilova","is_ca":false},{"name":"Phillip H. Lai","is_ca":false},{"name":"Dennis T. Maglinte","is_ca":false},{"name":"David Van Den Berg","is_ca":false},{"name":"Daniel J. Weisenberger","is_ca":false},{"name":"J. Todd Auman","is_ca":false},{"name":"Saianand Balu","is_ca":false},{"name":"Tom Bodenheimer","is_ca":false},{"name":"Katherine A. Hoadley","is_ca":false},{"name":"Alan P. Hoyle","is_ca":false},{"name":"Corbin D. Jones","is_ca":false},{"name":"Shaowu Meng","is_ca":false},{"name":"Piotr A. Mieczkowski","is_ca":false},{"name":"Lisle E. Mose","is_ca":false},{"name":"Amy H. Perou","is_ca":false},{"name":"Charles M. Perou","is_ca":false},{"name":"Jeffrey Roach","is_ca":false},{"name":"Yan Shi","is_ca":false},{"name":"Janae V. Simons","is_ca":false},{"name":"Tara Skelly","is_ca":false},{"name":"Matthew G. Soloway","is_ca":false},{"name":"Donghui Tan","is_ca":false},{"name":"Umadevi Veluvolu","is_ca":false},{"name":"Huihui Fan","is_ca":false},{"name":"Toshinori Hinoue","is_ca":false},{"name":"Peter W. Laird","is_ca":false},{"name":"Hui Shen","is_ca":false},{"name":"Wanding Zhou","is_ca":false},{"name":"Michelle Bellair","is_ca":false},{"name":"Kyle Chang","is_ca":false},{"name":"Kyle R. Covington","is_ca":false},{"name":"Chad J. Creighton","is_ca":false},{"name":"Huyen Dinh","is_ca":false},{"name":"HarshaVardhan Doddapaneni","is_ca":false},{"name":"Lawrence A. Donehower","is_ca":false},{"name":"Jennifer Drummond","is_ca":false},{"name":"Richard A. Gibbs","is_ca":false},{"name":"Robert Glenn","is_ca":false},{"name":"Walker Hale","is_ca":false},{"name":"Yi Han","is_ca":false},{"name":"Hai Hu","is_ca":false},{"name":"Viktoriya Korchina","is_ca":false},{"name":"Lora Lewis","is_ca":false},{"name":"Wei Li","is_ca":false},{"name":"Xiuping Liu","is_ca":false},{"name":"Margaret Morgan","is_ca":false},{"name":"Donna Morton","is_ca":false},{"name":"Donna M. Muzny","is_ca":false},{"name":"Jireh Santibanez","is_ca":false},{"name":"Margi Sheth","is_ca":false},{"name":"Eve Shinbrot","is_ca":false},{"name":"Linghua Wang","is_ca":false},{"name":"Min Wang","is_ca":false},{"name":"David A. Wheeler","is_ca":false},{"name":"Liu Xi","is_ca":false},{"name":"Fengmei Zhao","is_ca":false},{"name":"Julian M. Hess","is_ca":false},{"name":"Elizabeth L. Appelbaum","is_ca":false},{"name":"Matthew H. Bailey","is_ca":false},{"name":"Matthew G. Cordes","is_ca":true},{"name":"Li Ding","is_ca":false},{"name":"Catrina C. Fronick","is_ca":false},{"name":"Lucinda A. Fulton","is_ca":false},{"name":"Robert S. Fulton","is_ca":false},{"name":"Cyriac Kandoth","is_ca":false},{"name":"Elaine R. Mardis","is_ca":false},{"name":"Christopher A. Miller","is_ca":false},{"name":"Heather K. Schmidt","is_ca":false},{"name":"Richard K. Wilson","is_ca":false},{"name":"Daniel Crain","is_ca":false},{"name":"Erin Curley","is_ca":false},{"name":"Johanna Gardner","is_ca":false},{"name":"Kevin Lau","is_ca":false},{"name":"David Mallery","is_ca":false},{"name":"Scott Morris","is_ca":false},{"name":"Joseph Paulauskis","is_ca":false},{"name":"Robert Penny","is_ca":false},{"name":"Candace Shelton","is_ca":false},{"name":"Troy Shelton","is_ca":false},{"name":"Mark E. Sherman","is_ca":false},{"name":"Eric M. Thompson","is_ca":false},{"name":"Peggy Yena","is_ca":false},{"name":"Jay Bowen","is_ca":false},{"name":"Julie M. Gastier‐Foster","is_ca":false},{"name":"Mark Gerken","is_ca":false},{"name":"Kristen M. Leraas","is_ca":false},{"name":"Tara M. Lichtenberg","is_ca":false},{"name":"Nilsa C. Ramirez","is_ca":false},{"name":"Lisa Wise","is_ca":false},{"name":"Erik Zmuda","is_ca":false},{"name":"Niall M. Corcoran","is_ca":false},{"name":"Tony Costello","is_ca":false},{"name":"Christopher M. Hovens","is_ca":false},{"name":"André Lopes Carvalho","is_ca":false},{"name":"Ana Carolina de Carvalho","is_ca":false},{"name":"José Humberto Tavares Guerreiro Fregnani","is_ca":false},{"name":"Adhemar Longatto‐Filho","is_ca":false},{"name":"Rui Manuel Reis","is_ca":false},{"name":"Cristovam Scapulatempo‐Neto","is_ca":false},{"name":"Henrique C.S. Silveira","is_ca":false},{"name":"Daniel Onofre Vidal","is_ca":false},{"name":"Andrew Burnette","is_ca":false},{"name":"Jennifer Eschbacher","is_ca":false},{"name":"Beth Hermes","is_ca":false},{"name":"Ardene Noss","is_ca":false},{"name":"Rosy Singh","is_ca":false},{"name":"Matthew L. Anderson","is_ca":false},{"name":"Patricia D. Castro","is_ca":false},{"name":"Michael Ittmann","is_ca":false},{"name":"David G. Huntsman","is_ca":false},{"name":"Bernard Kohl","is_ca":false},{"name":"Xuan Le","is_ca":false},{"name":"Richard Thorp","is_ca":false},{"name":"Chris Andry","is_ca":false},{"name":"Elizabeth R. Duffy","is_ca":false},{"name":"Vladimir Lyadov","is_ca":false},{"name":"Oxana Paklina","is_ca":false},{"name":"Galiya Setdikova","is_ca":false},{"name":"Shabunin Av","is_ca":false},{"name":"Mikhail Tavobilov","is_ca":false},{"name":"Christopher McPherson","is_ca":false},{"name":"Ronald E. Warnick","is_ca":false},{"name":"Ross S. Berkowitz","is_ca":false},{"name":"Daniel Cramer","is_ca":false},{"name":"Colleen M. Feltmate","is_ca":false},{"name":"Neil S. Horowitz","is_ca":false},{"name":"Adam S. Kibel","is_ca":false},{"name":"Michael G. Muto","is_ca":false},{"name":"Chandrajit P. Raut","is_ca":false},{"name":"Andrei Malykh","is_ca":false},{"name":"Jill S. Barnholtz‐Sloan","is_ca":false},{"name":"Wendi Barrett","is_ca":false},{"name":"Karen Devine","is_ca":false},{"name":"Jordonna Fulop","is_ca":false},{"name":"Quinn T. Ostrom","is_ca":false},{"name":"Kristen Shimmel","is_ca":false},{"name":"Yingli Wolinsky","is_ca":false},{"name":"Andrew E. Sloan","is_ca":false},{"name":"Agostino Maria De Rose","is_ca":false},{"name":"Felice Giuliante","is_ca":false},{"name":"Marc T. Goodman","is_ca":false},{"name":"Beth Y. Karlan","is_ca":false},{"name":"Curt H. Hagedorn","is_ca":false},{"name":"John Eckman","is_ca":false},{"name":"Jodi Harr","is_ca":false},{"name":"Jerome K. Myers","is_ca":false},{"name":"Kelinda Tucker","is_ca":false},{"name":"Leigh Anne Zach","is_ca":false},{"name":"Brenda Deyarmin","is_ca":false},{"name":"Leonid Kvecher","is_ca":false},{"name":"Caroline Larson","is_ca":false},{"name":"Richard Mural","is_ca":false},{"name":"Stella Somiari","is_ca":false},{"name":"Aleš Vícha","is_ca":false},{"name":"Tomáš Zelinka","is_ca":false},{"name":"Joseph Bennett","is_ca":false},{"name":"Mary Iacocca","is_ca":false},{"name":"Brenda Rabeno","is_ca":false},{"name":"Patricia Swanson","is_ca":false},{"name":"Mathieu Latour","is_ca":false},{"name":"Louis Lacombe","is_ca":false},{"name":"Bernard Têtu","is_ca":false},{"name":"Alain Bergeron","is_ca":false},{"name":"Mary McGraw","is_ca":false},{"name":"Susan M. Staugaitis","is_ca":false},{"name":"John A. Chabot","is_ca":false},{"name":"Hanina Hibshoosh","is_ca":false},{"name":"Antonia R. Sepulveda","is_ca":false},{"name":"Tao Su","is_ca":false},{"name":"Timothy C. Wang","is_ca":false},{"name":"Olga Potapova","is_ca":false},{"name":"Olga L. Voronina","is_ca":false},{"name":"Laurence Desjardins","is_ca":false},{"name":"Odette Mariani","is_ca":false},{"name":"Sergio Roman‐Roman","is_ca":false},{"name":"Xavier Sastre","is_ca":false},{"name":"Marc‐Henri Stern","is_ca":false},{"name":"Feixiong Cheng","is_ca":false},{"name":"Sabina Signoretti","is_ca":false},{"name":"Andrew Berchuck","is_ca":false},{"name":"Darell D. Bigner","is_ca":false},{"name":"Eric Lipp","is_ca":false},{"name":"Jeffrey S. Marks","is_ca":false},{"name":"Shannon J. McCall","is_ca":false},{"name":"Roger E. McLendon","is_ca":false},{"name":"Angeles Alvarez Secord","is_ca":false},{"name":"Alexis Sharp","is_ca":false},{"name":"Madhusmita Behera","is_ca":false},{"name":"Daniel J. Brat","is_ca":false},{"name":"Amy Chen","is_ca":false},{"name":"Keith A. Delman","is_ca":false},{"name":"Seth Force","is_ca":false},{"name":"Fadlo R. Khuri","is_ca":false},{"name":"Kelly R. Magliocca","is_ca":false},{"name":"Shishir K. Maithel","is_ca":false},{"name":"Jeffrey J. Olson","is_ca":false},{"name":"Taofeek K. Owonikoko","is_ca":false},{"name":"Alan Pickens","is_ca":false},{"name":"Suresh S. Ramalingam","is_ca":false},{"name":"Dong M. Shin","is_ca":false},{"name":"Gabriel Sica","is_ca":false},{"name":"Erwin G. Van Meir","is_ca":false},{"name":"Hongzheng Zhang","is_ca":false},{"name":"Wil Eijckenboom","is_ca":false},{"name":"Ad Gillis","is_ca":false},{"name":"Esther Korpershoek","is_ca":false},{"name":"Leendert H. J. Looijenga","is_ca":false},{"name":"Wolter Oosterhuis","is_ca":false},{"name":"Hans Stoop","is_ca":false},{"name":"Kim E. van Kessel","is_ca":false},{"name":"Ellen C. Zwarthoff","is_ca":false},{"name":"Chiara Calatozzolo","is_ca":false},{"name":"Lucia Cuppini","is_ca":false},{"name":"Stefania Cuzzubbo","is_ca":false},{"name":"Francesco DiMeco","is_ca":false},{"name":"Gaetano Finocchiaro","is_ca":false},{"name":"Luca Mattei","is_ca":false},{"name":"Alessandro Perin","is_ca":false},{"name":"Bianca Pollo","is_ca":false},{"name":"Chu Chen","is_ca":false},{"name":"J. C. Houck","is_ca":false},{"name":"Pawadee Lohavanichbutr","is_ca":false},{"name":"Arndt Hartmann","is_ca":false},{"name":"Robert Stoehr","is_ca":false},{"name":"Helge Täubert","is_ca":false},{"name":"Sven Wach","is_ca":false},{"name":"Bernd Wullich","is_ca":false},{"name":"Witold Kycler","is_ca":false},{"name":"Dawid Murawa","is_ca":false},{"name":"Maciej Wiznerowicz","is_ca":false},{"name":"Ki Wung Chung","is_ca":false},{"name":"W. Jeffrey Edenfield","is_ca":false},{"name":"Julie Martin","is_ca":false},{"name":"Éric Baudin","is_ca":false},{"name":"Glenn J. Bubley","is_ca":false},{"name":"Raphael Bueno","is_ca":false},{"name":"Assunta De Rienzo","is_ca":false},{"name":"William G. Richards","is_ca":false},{"name":"Steven N. Kalkanis","is_ca":false},{"name":"Tom Mikkelsen","is_ca":false},{"name":"Houtan Noushmehr","is_ca":false},{"name":"Lisa Scarpace","is_ca":false},{"name":"Nicolas Girard","is_ca":false},{"name":"Marta Aymerich","is_ca":false},{"name":"Elı́as Campo","is_ca":false},{"name":"Eva Giné","is_ca":false},{"name":"Armando López Guillermo","is_ca":false},{"name":"Nguyen Van Bang","is_ca":false},{"name":"Phan Thi Hanh","is_ca":false},{"name":"Bùi Đức Phú","is_ca":false},{"name":"Yufang Tang","is_ca":false},{"name":"Howard Colman","is_ca":false},{"name":"Kimberley Evason","is_ca":false},{"name":"Peter R. Dottino","is_ca":false},{"name":"John A. Martignetti","is_ca":false},{"name":"Hani Gabra","is_ca":false},{"name":"Hartmut Juhl","is_ca":false},{"name":"Teniola Akeredolu","is_ca":false},{"name":"Serghei Stepa","is_ca":false},{"name":"Dave S.�B. Hoon","is_ca":false},{"name":"Keunsoo Ahn","is_ca":false},{"name":"Koo Jeong Kang","is_ca":true},{"name":"Felix Beuschlein","is_ca":false},{"name":"Anne Breggia","is_ca":false},{"name":"Michael J. Birrer","is_ca":false},{"name":"Debra Bell","is_ca":false},{"name":"Mitesh J. Borad","is_ca":false},{"name":"Alan H. Bryce","is_ca":false},{"name":"Erik P. Castle","is_ca":false},{"name":"Vishal S. Chandan","is_ca":false},{"name":"John C. Cheville","is_ca":false},{"name":"John A. Copland","is_ca":false},{"name":"Michael B. Farnell","is_ca":false},{"name":"Thomas J. Flotte","is_ca":false},{"name":"Nasra H. Giama","is_ca":false},{"name":"Thai H. Ho","is_ca":false},{"name":"Michael L. Kendrick","is_ca":false},{"name":"Jean‐Pierre Kocher","is_ca":false},{"name":"Karla Kopp","is_ca":false},{"name":"Catherine D. Moser","is_ca":false},{"name":"David M. Nagorney","is_ca":false},{"name":"Daniel R. O’Brien","is_ca":false},{"name":"Brian Patrick O’Neill","is_ca":false},{"name":"Tushar Patel","is_ca":false},{"name":"Gloria M. Petersen","is_ca":false},{"name":"Florencia G. Que","is_ca":false},{"name":"Michael Rivera","is_ca":false},{"name":"Lewis R. Roberts","is_ca":false},{"name":"Robert C. Smallridge","is_ca":false},{"name":"Thomas C. Smyrk","is_ca":false},{"name":"Melissa Stanton","is_ca":false},{"name":"R. Houston Thompson","is_ca":false},{"name":"Michael Torbenson","is_ca":false},{"name":"Ju Dong Yang","is_ca":false},{"name":"Lizhi Zhang","is_ca":false},{"name":"Fadi Brimo","is_ca":false},{"name":"Jaffer A. Ajani","is_ca":false},{"name":"Ana Maria Angulo Gonzalez","is_ca":false},{"name":"Carmen Behrens","is_ca":false},{"name":"Jolanta Bondaruk","is_ca":false},{"name":"Russell R. Broaddus","is_ca":false},{"name":"Bogdan Czerniak","is_ca":false},{"name":"Bita Esmaeli","is_ca":false},{"name":"Junya Fujimoto","is_ca":false},{"name":"Charles Guo","is_ca":false},{"name":"Alexander J. Lazar","is_ca":false},{"name":"Christopher J. Logothetis","is_ca":false},{"name":"Funda Meric‐Bernstam","is_ca":false},{"name":"César A. Moran","is_ca":false},{"name":"Lois M. Ramondetta","is_ca":false},{"name":"David C. Rice","is_ca":false},{"name":"Anil K. Sood","is_ca":false},{"name":"Pheroze Tamboli","is_ca":false},{"name":"Timothy Thompson","is_ca":false},{"name":"Patricia Troncoso","is_ca":false},{"name":"Anne S. Tsao","is_ca":false},{"name":"Ignacio Wistuba","is_ca":false},{"name":"Candace Carter","is_ca":false},{"name":"Lauren E. Haydu","is_ca":false},{"name":"Peter Hersey","is_ca":false},{"name":"Valerie Jakrot","is_ca":false},{"name":"Hojabr Kakavand","is_ca":false},{"name":"Richard Kefford","is_ca":false},{"name":"Kenneth Lee","is_ca":false},{"name":"Georgina V. Long","is_ca":false},{"name":"Graham J. Mann","is_ca":false},{"name":"Michael Quinn","is_ca":false},{"name":"Robyn P.M. Saw","is_ca":false},{"name":"Richard A. Scolyer","is_ca":false},{"name":"Kerwin F. Shannon","is_ca":false},{"name":"Andrew J. Spillane","is_ca":false},{"name":"Jonathan R. Stretch","is_ca":false},{"name":"Maria Synott","is_ca":false},{"name":"John F. Thompson","is_ca":false},{"name":"James S. Wilmott","is_ca":false},{"name":"Hikmat Al‐Ahmadie","is_ca":false},{"name":"Timothy A. Chan","is_ca":false},{"name":"Ronald Ghossein","is_ca":false},{"name":"Anuradha Gopalan","is_ca":false},{"name":"Douglas A. Levine","is_ca":false},{"name":"Victor Reuter","is_ca":false},{"name":"Samuel Singer","is_ca":true},{"name":"Bhuvanesh Singh","is_ca":false},{"name":"Nguyen Viet Tien","is_ca":false},{"name":"Thomas Broudy","is_ca":false},{"name":"Cyrus Mirsaidi","is_ca":false},{"name":"Praveen Nair","is_ca":false},{"name":"Paul Drwiega","is_ca":false},{"name":"Judy Miller","is_ca":false},{"name":"Jennifer R. Smith","is_ca":false},{"name":"Howard Zaren","is_ca":false},{"name":"Joong-Won Park","is_ca":false},{"name":"Nguyễn Phi Hùng","is_ca":false},{"name":"Electron Kebebew","is_ca":false},{"name":"W. Marston Linehan","is_ca":false},{"name":"Adam R. Metwalli","is_ca":false},{"name":"Karel Pacák","is_ca":false},{"name":"Peter A. Pinto","is_ca":false},{"name":"Mark Schiffman","is_ca":false},{"name":"Laura S. Schmidt","is_ca":false},{"name":"Cathy D. Vocke","is_ca":false},{"name":"Nicolas Wentzensen","is_ca":false},{"name":"Robert Worrell","is_ca":false},{"name":"Hannah Yang","is_ca":false},{"name":"Marc Moncrieff","is_ca":false},{"name":"Chandra Goparaju","is_ca":true},{"name":"Jonathan Melamed","is_ca":false},{"name":"Harvey I. Pass","is_ca":false},{"name":"Natalia Botnariuc","is_ca":false},{"name":"Irina Caraman","is_ca":false},{"name":"Mircea Cernat","is_ca":false},{"name":"Inga Chemencedji","is_ca":false},{"name":"Adrian Clipca","is_ca":false},{"name":"Serghei Doruc","is_ca":false},{"name":"Ghenadie Gorincioi","is_ca":false},{"name":"Sergiu Mura","is_ca":false},{"name":"Maria Pirtac","is_ca":false},{"name":"Irina Stancul","is_ca":false},{"name":"Diana Tcaciuc","is_ca":false},{"name":"Monique Albert","is_ca":false},{"name":"Iakovina Alexopoulou","is_ca":false},{"name":"Angel Arnaout","is_ca":false},{"name":"John G. Bartlett","is_ca":false},{"name":"Jay Engel","is_ca":false},{"name":"Sébastien Gilbert","is_ca":false},{"name":"Jeremy Parfitt","is_ca":false},{"name":"Harman Sekhon","is_ca":false},{"name":"George Thomas","is_ca":false},{"name":"Doris M. Rassl","is_ca":false},{"name":"Robert C. Rintoul","is_ca":false},{"name":"Carlo Bifulco","is_ca":false},{"name":"Raina Tamakawa","is_ca":false},{"name":"Walter J. Urba","is_ca":false},{"name":"Nicholas K. Hayward","is_ca":false},{"name":"Henri Timmers","is_ca":false},{"name":"Anna Antenucci","is_ca":false},{"name":"Francesco Facciolo","is_ca":false},{"name":"Gian Luca Grazi","is_ca":false},{"name":"Mirella Marino","is_ca":false},{"name":"Roberta Merola","is_ca":false},{"name":"Ronald R. de Krijger","is_ca":false},{"name":"Anne‐Paule Gimenez‐Roqueplo","is_ca":false},{"name":"Alain Piché","is_ca":false},{"name":"Simone Chevalier","is_ca":false},{"name":"Ginette McKercher","is_ca":false},{"name":"Kıvanç Birsoy","is_ca":false},{"name":"Gene H. Barnett","is_ca":false},{"name":"Cathy Brewer","is_ca":false},{"name":"Carol Farver","is_ca":false},{"name":"Theresa Naska","is_ca":false},{"name":"Nathan A. Pennell","is_ca":false},{"name":"Daniel Raymond","is_ca":false},{"name":"Cathy Schilero","is_ca":false},{"name":"Kathy Smolenski","is_ca":false},{"name":"Quaid Morris","is_ca":false},{"name":"Jeffrey A. Borgia","is_ca":false},{"name":"Mark Pool","is_ca":false},{"name":"Christopher W. Seder","is_ca":false},{"name":"Kerstin Junker","is_ca":false},{"name":"Larsson Omberg","is_ca":false},{"name":"Mikhail Dinkin","is_ca":false},{"name":"George Manikhas","is_ca":false},{"name":"Domenico Alvaro","is_ca":false},{"name":"Maria Consiglia Bragazzi","is_ca":false},{"name":"Vincenzo Cardinale","is_ca":false},{"name":"Guido Carpino","is_ca":false},{"name":"Eugenio Gaudio","is_ca":false},{"name":"David Chesla","is_ca":false},{"name":"Sandra Cottingham","is_ca":false},{"name":"Michael Dubina","is_ca":false},{"name":"Fedor Moiseenko","is_ca":false},{"name":"Renumathy Dhanasekaran","is_ca":false},{"name":"Karl‐Friedrich Becker","is_ca":false},{"name":"Klaus‐Peter Janssen","is_ca":false},{"name":"Julia Slotta‐Huspenina","is_ca":false},{"name":"Mohamed H. Abdel‐Rahman","is_ca":false},{"name":"Dina Aziz","is_ca":false},{"name":"Sue Bell","is_ca":false},{"name":"Colleen M. Cebulla","is_ca":false},{"name":"Amy Davis","is_ca":false},{"name":"Rebecca Duell","is_ca":false},{"name":"J. Bradley Elder","is_ca":false},{"name":"Joe Hilty","is_ca":false},{"name":"Bahavna Kumar","is_ca":false},{"name":"James C. Lang","is_ca":false},{"name":"Norman L. Lehman","is_ca":false},{"name":"Randy Mandt","is_ca":false},{"name":"Phuong Nguyen","is_ca":false},{"name":"Robert Pilarski","is_ca":false},{"name":"Karan Rai","is_ca":false},{"name":"Lynn Schoenfield","is_ca":false},{"name":"Kelly Senecal","is_ca":false},{"name":"Paul E. Wakely","is_ca":false},{"name":"Paul Hansen","is_ca":false},{"name":"Ronald M. Lechan","is_ca":false},{"name":"James F. Powers","is_ca":false},{"name":"Arthur S. Tischler","is_ca":false},{"name":"William E. Grizzle","is_ca":false},{"name":"Katherine C. Sexton","is_ca":false},{"name":"Alison Kastl","is_ca":false},{"name":"Joel Henderson","is_ca":false},{"name":"Sima P. Porten","is_ca":false},{"name":"Jens Waldmann","is_ca":false},{"name":"Martin Faßnacht","is_ca":false},{"name":"L. Sylvia","is_ca":false},{"name":"Dirk Schadendorf","is_ca":false},{"name":"Marta Couce","is_ca":false},{"name":"Markus Graefen","is_ca":false},{"name":"Hartwig Huland","is_ca":false},{"name":"Guido Sauter","is_ca":false},{"name":"Thorsten Schlomm","is_ca":true},{"name":"Ronald Simon","is_ca":true},{"name":"Pierre Tennstedt","is_ca":false},{"name":"Oluwole Olabode","is_ca":false},{"name":"Mark A. Nelson","is_ca":false},{"name":"Oliver F. Bathe","is_ca":false},{"name":"Peter R. Carroll","is_ca":false},{"name":"June M. Chan","is_ca":false},{"name":"Philip J. DiSaia","is_ca":false},{"name":"Pat Glenn","is_ca":false},{"name":"Robin Kate Kelley","is_ca":false},{"name":"Charles N. Landen","is_ca":false},{"name":"Joanna Phillips","is_ca":false},{"name":"Michael D. Prados","is_ca":false},{"name":"Jeffry Simko","is_ca":true},{"name":"Karen Smith‐McCune","is_ca":false},{"name":"Scott Vandenberg","is_ca":false},{"name":"Kevin K. Roggin","is_ca":false},{"name":"Ashley Fehrenbach","is_ca":false},{"name":"Ady Kendler","is_ca":false},{"name":"Suzanne Sifri","is_ca":false},{"name":"Ruth Steele","is_ca":false},{"name":"Antonio Jimeno","is_ca":false},{"name":"Francis A. Carey","is_ca":false},{"name":"Ian Forgie","is_ca":false},{"name":"Massimo Mannelli","is_ca":false},{"name":"Michael E. Carney","is_ca":false},{"name":"Brenda Hernandez","is_ca":false},{"name":"Benito Campos","is_ca":false},{"name":"Christel Herold‐Mende","is_ca":false},{"name":"Christin Jungk","is_ca":false},{"name":"Andreas Unterberg","is_ca":false},{"name":"Andreas von Deimling","is_ca":false},{"name":"Aaron Bossler","is_ca":false},{"name":"Joseph Galbraith","is_ca":false},{"name":"Laura Jacobus","is_ca":false},{"name":"Michael Knudson","is_ca":false},{"name":"Tina Knutson","is_ca":false},{"name":"Deqin Ma","is_ca":false},{"name":"Mohammed Milhem","is_ca":false},{"name":"Rita Sigmund","is_ca":false},{"name":"Andrew K. Godwin","is_ca":false},{"name":"Rashna Madan","is_ca":false},{"name":"Howard G. Rosenthal","is_ca":false},{"name":"Clement Adebamowo","is_ca":false},{"name":"Sally N. Adebamowo","is_ca":false},{"name":"Alex Boussioutas","is_ca":false},{"name":"David G. Beer","is_ca":false},{"name":"Thomas J. Giordano","is_ca":false},{"name":"Anne‐Marie Mes‐Masson","is_ca":false},{"name":"Fred Saad","is_ca":false},{"name":"Thèrése Bocklage","is_ca":false},{"name":"Lisa M. Landrum","is_ca":false},{"name":"Robert S. Mannel","is_ca":false},{"name":"Kathleen Moore","is_ca":false},{"name":"Katherine Moxley","is_ca":false},{"name":"Russel Postier","is_ca":true},{"name":"Joan L. Walker","is_ca":false},{"name":"Rosemary E. Zuna","is_ca":false},{"name":"Michael D. Feldman","is_ca":false},{"name":"Federico Valdivieso","is_ca":false},{"name":"Rajiv Dhir","is_ca":false},{"name":"James D. Luketich","is_ca":false},{"name":"Edna M. Mora Pinero","is_ca":false},{"name":"Mario Quintero-Aguilo","is_ca":false},{"name":"Carlos Gilberto Carlotti","is_ca":false},{"name":"José Sebastião dos Santos","is_ca":false},{"name":"Rafael Kemp","is_ca":false},{"name":"Ajith Sankarankuty","is_ca":false},{"name":"Daniela Pretti da Cunha Tirapelli","is_ca":false},{"name":"James W.F. Catto","is_ca":false},{"name":"Kathy Agnew","is_ca":false},{"name":"Elizabeth M. Swisher","is_ca":true},{"name":"Jenette Creaney","is_ca":false},{"name":"Bruce Robinson","is_ca":false},{"name":"Carl Simon Shelley","is_ca":false},{"name":"Eryn M. Godwin","is_ca":false},{"name":"Sara Kendall","is_ca":false},{"name":"Cassaundra Shipman","is_ca":false},{"name":"Carol R. Bradford","is_ca":false},{"name":"Thomas E. Carey","is_ca":false},{"name":"Jeffey Moyer","is_ca":false},{"name":"Lisa A. Peterson","is_ca":false},{"name":"Mark E. Prince","is_ca":false},{"name":"Laura S. Rozek","is_ca":false},{"name":"Gregory T. Wolf","is_ca":false},{"name":"Rayleen Bowman","is_ca":false},{"name":"Kwun M. Fong","is_ca":false},{"name":"Ian A. Yang","is_ca":false},{"name":"Robert J. Korst","is_ca":false},{"name":"W. Kimryn Rathmell","is_ca":false},{"name":"J. Leigh Fantacone-Campbell","is_ca":false},{"name":"Jeffrey A. Hooke","is_ca":false},{"name":"Albert J. Kovatich","is_ca":false},{"name":"Craig D. Shriver","is_ca":false},{"name":"John F. DiPersio","is_ca":false},{"name":"Bettina F. Drake","is_ca":false},{"name":"Ramaswamy Govindan","is_ca":false},{"name":"Sharon E. Heath","is_ca":false},{"name":"Timothy J. Ley","is_ca":false},{"name":"Brian A. Van Tine","is_ca":false},{"name":"Peter Westervelt","is_ca":false},{"name":"Mark A. Rubin","is_ca":false},{"name":"Jung Il Lee","is_ca":false},{"name":"Natália D. Aredes","is_ca":false},{"name":"Armaz Mariamidze","is_ca":false},{"name":"Olivier Lichtarge","is_ca":false},{"name":"Paul C. Boutros","is_ca":true},{"name":"Benjamin J. Raphael","is_ca":false},{"name":"Wei Zhang","is_ca":false},{"name":"Michael C. Wendl","is_ca":false},{"name":"Sanjay Jain","is_ca":false},{"name":"Shashikant Kulkarni","is_ca":false},{"name":"Jüri Reimand","is_ca":true},{"name":"Ken Chen","is_ca":false},{"name":"Sharon E. Plon","is_ca":true},{"name":"Feng Chen","is_ca":false},{"name":"Li Ding","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006050756718381655,"gpt":0.2254527860441349,"spread":0.2194020293257532,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002931193,0.0003248462,0.0002714575,0.0009622644,0.0004323002,0.0004774236,0.0003175836,0.0005123509,0.003368475],"category_scores_gemma":[0.001144842,0.0001944857,0.0002485297,0.0009675274,0.0003279171,0.0001811692,0.0003656479,0.0002719056,0.0004525971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002152956,"about_ca_system_score_gemma":0.0002920191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003076336,"about_ca_topic_score_gemma":0.004611822,"domain_scores_codex":[0.9995709,0.00004016453,0.00004894994,0.0001545619,0.0001101906,0.00007515438],"domain_scores_gemma":[0.9996505,0.0001112168,0.0001078223,0.00003740461,0.00003554078,0.00005755693],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008945127,0.0000558332,0.9379498,0.00009673709,0.0002082654,0.009251149,0.0004764478,0.0003235628,0.01906157,0.0008290875,0.001688546,0.02916444],"study_design_scores_gemma":[0.00009437035,0.0002320509,0.9495572,0.00008365311,0.000499306,0.02857345,0.0004799501,0.0005254242,0.006043606,0.001001706,0.01288917,0.00002009675],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951136,0.001385825,0.0003521561,0.00005583507,0.00001637898,0.00000930414,0.001542541,0.00003078839,0.001493605],"genre_scores_gemma":[0.9975085,0.0005174704,0.0002875377,0.00003301413,0.00001433762,0.000005170099,0.0008550216,0.00001399675,0.0007648523],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003368475,"threshold_uncertainty_score":0.01126862,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2129637612","doi":"10.1101/cshperspect.a012559","title":"DNA Base Damage by Reactive Oxygen Species, Oxidizing Agents, and UV Radiation","year":2013,"lang":"en","type":"review","venue":"Cold Spring Harbor Perspectives in Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":865,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Deoxyribose; DNA damage; Singlet oxygen; Reactive oxygen species; Nucleobase; DNA; Biology; Purine; Moiety; Photoprotection; Oxidizing agent; Ribose; Photochemistry; Pyrimidine dimer; Biochemistry; Biophysics; Deoxyguanosine; DNA repair; Oxygen; Chemistry; Stereochemistry; Organic chemistry; Enzyme","authors":[{"name":"Jean Cadet","is_ca":true},{"name":"J. Richard Wagner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02626523271444346,"gpt":0.2970541332427672,"spread":0.2707889005283237,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000504693,0.001052439,0.001201103,0.002386487,0.0004583656,0.001124188,0.0008869096,0.001040658,0.004632903],"category_scores_gemma":[0.0004469738,0.0002916307,0.000317332,0.002655558,0.000572752,0.001494433,0.0008444022,0.001528861,0.005803536],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007200004,"about_ca_system_score_gemma":0.001120972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008661601,"about_ca_topic_score_gemma":0.001455113,"domain_scores_codex":[0.9997824,0.00002266348,0.00002008522,0.00004552843,0.0001063692,0.00002299611],"domain_scores_gemma":[0.9997533,0.00005602376,0.00003944133,0.00001060693,0.0001017283,0.00003887131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005442102,0.000063908,0.0002285724,0.009247173,0.00003801178,0.0002230777,0.00006870807,0.0002589687,0.008635303,0.004490193,0.03612854,0.9405631],"study_design_scores_gemma":[0.000003989343,0.00004997822,0.0004760896,0.0008919932,0.00002223164,0.0006477266,0.00005644924,0.00002972707,0.001521707,0.001624321,0.9946612,0.00001463473],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001505219,0.9965827,0.000252489,0.0002668466,0.0005175609,0.00000577129,0.00001967878,0.00001292443,0.002191452],"genre_scores_gemma":[0.0005818744,0.9970048,0.0002260042,0.0001382187,0.0002695591,0.000006996588,0.00003898741,0.00000278801,0.001730813],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004632903,"threshold_uncertainty_score":0.01549858,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2562446577","doi":"10.1038/ncb3452","title":"The control of DNA repair by the cell cycle","year":2016,"lang":"en","type":"review","venue":"Nature Cell Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":753,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"DNA repair; Biology; DNA re-replication; Cell cycle; Cell biology; DNA replication; Cell division; Genome instability; DNA; Eukaryotic DNA replication; Genetics; Control of chromosome duplication; Gene duplication; DNA damage; Computational biology; Cell; Gene","authors":[{"name":"Nicole Hustedt","is_ca":true},{"name":"Daniel Durocher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004566501871856195,"gpt":0.256115346341517,"spread":0.2515488444696608,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007708005,0.001312234,0.001554591,0.001822456,0.0003951137,0.001736752,0.001472571,0.001669768,0.002489462],"category_scores_gemma":[0.0008108809,0.0004282058,0.0003969695,0.002165731,0.001254283,0.002273555,0.001298919,0.002532355,0.0017259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001324033,"about_ca_system_score_gemma":0.001427193,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001355517,"about_ca_topic_score_gemma":0.002135931,"domain_scores_codex":[0.9997515,0.00002918557,0.00003328983,0.00005838454,0.00009255425,0.00003506861],"domain_scores_gemma":[0.9996405,0.000146473,0.00006212201,0.00001555662,0.00009006304,0.0000453537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001319232,0.00004046291,0.0001626217,0.01135982,0.00006154002,0.0001851798,0.00005480111,0.0007004401,0.004669013,0.01237895,0.03313203,0.9371232],"study_design_scores_gemma":[0.00001266183,0.0000337123,0.0003774964,0.0013062,0.00004980574,0.0003885667,0.00003995898,0.0001136749,0.0009204691,0.004818849,0.9919207,0.00001785175],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00007218448,0.9983401,0.0001881812,0.0003252736,0.0002891185,0.000002519572,0.00001315489,0.000006808953,0.0007627238],"genre_scores_gemma":[0.0007021943,0.9982381,0.0001459161,0.0001934511,0.0002530729,0.000003585175,0.00002202823,0.00000161104,0.0004401148],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002489462,"threshold_uncertainty_score":0.00960654,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131827278","doi":"10.1016/j.cell.2008.12.042","title":"The RIDDLE Syndrome Protein Mediates a Ubiquitin-Dependent Signaling Cascade at Sites of DNA Damage","year":2009,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":744,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"Boehringer Ingelheim Stiftung","keywords":"Biology; Ubiquitin; DNA damage; Cell biology; Genetics; DNA; Signal transduction; Cascade; Computational biology; Gene","authors":[{"name":"Grant S. Stewart","is_ca":false},{"name":"Stephanie Panier","is_ca":true},{"name":"Kelly Townsend","is_ca":false},{"name":"Abdallah Al-Hakim","is_ca":true},{"name":"Nadine K. Kolas","is_ca":true},{"name":"Edward S. Miller","is_ca":false},{"name":"Shinichiro Nakada","is_ca":true},{"name":"Jarkko Ylanko","is_ca":true},{"name":"Signe Olivarius","is_ca":true},{"name":"Megan Mendez","is_ca":true},{"name":"Ceri Oldreive","is_ca":false},{"name":"Jan Wildenhain","is_ca":true},{"name":"Andrea Tagliaferro","is_ca":true},{"name":"Laurence Pelletier","is_ca":true},{"name":"Nadine Taubenheim","is_ca":false},{"name":"Anne Durandy","is_ca":false},{"name":"Philip J. Byrd","is_ca":false},{"name":"Tatjana Stanković","is_ca":false},{"name":"A. Malcolm R. Taylor","is_ca":false},{"name":"Daniel Durocher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00826586010418587,"gpt":0.2151282199138528,"spread":0.2068623598096669,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005250638,0.0009259339,0.0005652762,0.0006611897,0.0004349615,0.0008010013,0.0004931594,0.0007942815,0.001270442],"category_scores_gemma":[0.0004236767,0.0003539218,0.0004487902,0.000254533,0.0004996991,0.0007516555,0.0006622385,0.0008643701,0.0009276117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006171033,"about_ca_system_score_gemma":0.0002921322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005572828,"about_ca_topic_score_gemma":0.0008909905,"domain_scores_codex":[0.9996461,0.00007122527,0.00002300894,0.00007586751,0.000103991,0.00007980869],"domain_scores_gemma":[0.9997478,0.00004972096,0.00005508834,0.00004390107,0.00003977355,0.00006366563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001579145,0.0000215229,0.0005129987,0.00007424808,0.00001531825,0.0005727912,0.00003364611,0.0001641819,0.9939587,0.001451866,0.0001900316,0.002846767],"study_design_scores_gemma":[0.00003810201,0.0001876538,0.006157784,0.00001668403,0.00003278015,0.001688065,0.00006841502,0.001713633,0.9853381,0.0006963985,0.004043295,0.000019053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.962627,0.01211675,0.01814159,0.0007370513,0.0001415065,0.00009908414,0.0005395932,0.0003705363,0.00522692],"genre_scores_gemma":[0.9854488,0.003671908,0.006698242,0.0001144752,0.00003902261,0.00003913852,0.0004108122,0.00002398722,0.003553571],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001270442,"threshold_uncertainty_score":0.004477382,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2014766736","doi":"10.1016/j.cell.2007.01.030","title":"Chromatin Challenges during DNA Replication and Repair","year":2007,"lang":"en","type":"review","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":734,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"","keywords":"Chromatin; Biology; Nucleosome; Scaffold/matrix attachment region; Chromatin remodeling; ChIA-PET; Cell biology; Genetics; DNA replication; Epigenetics; DNA repair; DNA; Computational biology; Gene","authors":[{"name":"Anja Groth","is_ca":false},{"name":"Walter Rocha","is_ca":true},{"name":"Alain Verreault","is_ca":true},{"name":"Geneviève Almouzni","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03678148025606708,"gpt":0.301115923553657,"spread":0.2643344432975899,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001379509,0.001225728,0.002106426,0.001548402,0.0006174378,0.00187744,0.001834691,0.002867363,0.001732858],"category_scores_gemma":[0.001091729,0.0005415441,0.0003719376,0.00220722,0.001882965,0.003177432,0.00119066,0.003845465,0.001586877],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001275016,"about_ca_system_score_gemma":0.001332015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001373989,"about_ca_topic_score_gemma":0.003841845,"domain_scores_codex":[0.9997216,0.00005024049,0.0000353805,0.00005020581,0.0001152583,0.00002732148],"domain_scores_gemma":[0.9994113,0.0002927047,0.00005617706,0.00002078371,0.0001618838,0.00005702331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001162967,0.00004771977,0.000194312,0.01102231,0.00008211438,0.0004870739,0.0001282683,0.0007892041,0.005233874,0.01366996,0.08157892,0.88665],"study_design_scores_gemma":[0.00001269182,0.00002641529,0.0002190783,0.001200971,0.0000460296,0.0008831904,0.00009102413,0.00008998846,0.0007231024,0.005230936,0.9914596,0.0000169521],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006212082,0.9975357,0.0003546791,0.0006500215,0.000776317,0.00000267377,0.000006580652,0.000005784687,0.0006061395],"genre_scores_gemma":[0.0004012833,0.9970793,0.0003615073,0.0005233391,0.0008058553,0.000005810674,0.0000154462,0.000001681191,0.0008058599],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002867363,"threshold_uncertainty_score":0.009250939,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070650108","doi":"10.1016/s0092-8674(01)00416-0","title":"Differential Timing and Control of Noncrossover and Crossover Recombination during Meiosis","year":2001,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":706,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; University of Nottingham","keywords":"Biology; Meiosis; Recombination; Crossover; Genetics; Differential (mechanical device); Chromosomal crossover; Homologous recombination; Genetic recombination; Gene","authors":[{"name":"Thorsten Allers","is_ca":false},{"name":"Michael Lichten","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005369228907741531,"gpt":0.2102502343191967,"spread":0.2048810054114552,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004822904,0.0002097415,0.0005148695,0.0005620418,0.0002445688,0.001620542,0.0005354834,0.0003557449,0.001524326],"category_scores_gemma":[0.0009275674,0.000347105,0.0001887041,0.0002866562,0.0003028495,0.000876986,0.0004570024,0.0005939719,0.000528528],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005764496,"about_ca_system_score_gemma":0.0001961002,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003673093,"about_ca_topic_score_gemma":0.0008167891,"domain_scores_codex":[0.9996961,0.00004392988,0.00002406805,0.00008959909,0.00008345766,0.00006289329],"domain_scores_gemma":[0.9988443,0.0004038455,0.000234447,0.0001615401,0.0001501944,0.0002057607],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002956002,0.00001315324,0.0007728957,0.00002529206,0.000004202119,0.00004482298,0.00004723905,0.00007611395,0.9938064,0.001030871,0.0000379593,0.003845583],"study_design_scores_gemma":[0.00003285941,0.0002051063,0.06486494,0.00001333579,0.00002105627,0.0004789028,0.0001230192,0.002087585,0.9283522,0.0008813063,0.00291688,0.00002284386],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9799548,0.007500729,0.009083915,0.0001323655,0.00007508673,0.00001530428,0.0002063675,0.0002220185,0.00280939],"genre_scores_gemma":[0.9942715,0.001160278,0.001235845,0.00003983126,0.00003911047,0.00001366834,0.0002149669,0.0001038598,0.002921004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001620542,"threshold_uncertainty_score":0.005099416,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2007369689","doi":"10.1042/bj20080413","title":"Repair of ionizing radiation-induced DNA double-strand breaks by non-homologous end-joining","year":2009,"lang":"en","type":"review","venue":"Biochemical Journal","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":701,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"DNA repair protein XRCC4; Ku80; Non-homologous end joining; Ku70; DNA ligase; DNA repair; Genome instability; Biology; Molecular biology; DNA-PKcs; Homologous recombination; DNA damage; DNA; Cell biology; DNA mismatch repair; Genetics; Gene; DNA-binding protein; Transcription factor","authors":[{"name":"Brandi L. Mahaney","is_ca":true},{"name":"Katheryn Meek","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02281464683989102,"gpt":0.3007139206348642,"spread":0.2778992737949732,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002525816,0.001032108,0.001553846,0.001785748,0.0002974623,0.0007784624,0.0009532238,0.0008171775,0.004341504],"category_scores_gemma":[0.0002744102,0.0002353983,0.000297214,0.002457814,0.0003130531,0.001145966,0.00045211,0.0008833105,0.007024886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004989602,"about_ca_system_score_gemma":0.000585591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005365619,"about_ca_topic_score_gemma":0.0007535776,"domain_scores_codex":[0.9998814,0.00001237902,0.00001227196,0.00002679532,0.00005434886,0.00001277385],"domain_scores_gemma":[0.9998922,0.00002444081,0.00002196731,0.000005302368,0.00003766332,0.00001846227],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006875947,0.00008347182,0.0001556606,0.008914464,0.00005226931,0.0002498133,0.00003729863,0.0003138965,0.008148678,0.002182985,0.01317441,0.9666184],"study_design_scores_gemma":[0.00001220469,0.0001109966,0.0009433766,0.0009976185,0.00005088538,0.001572331,0.00005652699,0.000071499,0.002753611,0.001369355,0.9920458,0.00001583966],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000507719,0.9947983,0.0006657614,0.0001322896,0.0001980675,0.00001273554,0.00004000037,0.00003509357,0.003610102],"genre_scores_gemma":[0.001369168,0.9956148,0.0006289664,0.00005752281,0.00007106493,0.00001030317,0.00007173209,0.000003273776,0.002173151],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004341504,"threshold_uncertainty_score":0.0145238,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988259427","doi":"10.1038/nature12318","title":"53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark","year":2013,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":681,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research","keywords":"Ubiquitin; DNA damage; DNA; Chemistry; Cell biology; Molecular biology; Computational biology; Biology; Biochemistry; Gene","authors":[{"name":"Amélie Fradet‐Turcotte","is_ca":true},{"name":"Marella D. Canny","is_ca":true},{"name":"Cristina Escribano‐Diaz","is_ca":true},{"name":"Alexandre Orthwein","is_ca":true},{"name":"Charles Chung Yun Leung","is_ca":true},{"name":"Hao Huang","is_ca":true},{"name":"Marie-Claude Landry","is_ca":true},{"name":"Julianne L. Kitevski-LeBlanc","is_ca":true},{"name":"Sylvie M. Noordermeer","is_ca":true},{"name":"Frank Sicheri","is_ca":true},{"name":"Daniel Durocher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006270752073888141,"gpt":0.2355985514539296,"spread":0.2293277993800414,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002936485,0.0005650449,0.0006143879,0.0004434145,0.0009694508,0.00100311,0.0006392987,0.001135595,0.007677121],"category_scores_gemma":[0.0004519554,0.0005437847,0.0004815946,0.0004169285,0.000498895,0.0008183367,0.0007651417,0.001081679,0.00677626],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00170579,"about_ca_system_score_gemma":0.0003646396,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001462433,"about_ca_topic_score_gemma":0.001510499,"domain_scores_codex":[0.999709,0.00002340674,0.00001299778,0.0001026515,0.00009108782,0.00006088688],"domain_scores_gemma":[0.9998149,0.0000161901,0.0000487032,0.00002707243,0.0000377642,0.00005530439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003381924,0.00001787912,0.0008349156,0.00008249006,0.00002516229,0.0002380071,0.00003220959,0.0001337735,0.9860395,0.00123995,0.002118568,0.008899399],"study_design_scores_gemma":[0.00001338885,0.00007532159,0.009272768,0.00001315112,0.00002065412,0.0008516207,0.00004136685,0.0005534073,0.974933,0.0005900639,0.01361686,0.00001844177],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8619497,0.03743098,0.05729338,0.004777397,0.001559055,0.00009102021,0.002415626,0.002506938,0.03197588],"genre_scores_gemma":[0.9647568,0.002900461,0.00532777,0.0003676743,0.0001353629,0.00002356124,0.001634777,0.0001357175,0.02471776],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007677121,"threshold_uncertainty_score":0.02568251,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2883664363","doi":"10.1038/s41586-018-0340-7","title":"The shieldin complex mediates 53BP1-dependent DNA repair","year":2018,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":660,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"National Cancer Institute; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Cancer Research UK","keywords":"Chromatin; Molecular biology; Effector; Homologous recombination; DNA; DNA repair; DNA damage; Cell biology; Biology; Polymerase; Poly ADP ribose polymerase; Replication protein A; Chemistry; DNA-binding protein; Genetics; Gene; Transcription factor","authors":[{"name":"Sylvie M. Noordermeer","is_ca":true},{"name":"Salomé Adam","is_ca":true},{"name":"Dheva Setiaputra","is_ca":true},{"name":"Marco Barazas","is_ca":false},{"name":"Stephen J. Pettitt","is_ca":false},{"name":"Alexanda K. Ling","is_ca":true},{"name":"Michele Olivieri","is_ca":true},{"name":"Alejandro Álvarez-Quilón","is_ca":true},{"name":"Nathalie Moatti","is_ca":true},{"name":"Michal Zimmermann","is_ca":true},{"name":"Stefano Annunziato","is_ca":false},{"name":"Dragomir B. Krastev","is_ca":false},{"name":"Feifei Song","is_ca":false},{"name":"Inger Brandsma","is_ca":false},{"name":"Jessica Frankum","is_ca":false},{"name":"Rachel Brough","is_ca":false},{"name":"Alana Sherker","is_ca":true},{"name":"Sébastien Landry","is_ca":true},{"name":"Rachel K. Szilard","is_ca":true},{"name":"Meagan Munro","is_ca":true},{"name":"Andrea McEwan","is_ca":true},{"name":"Théo Goullet de Rugy","is_ca":true},{"name":"Zhen‐Yuan Lin","is_ca":true},{"name":"Traver Hart","is_ca":false},{"name":"Jason Moffat","is_ca":true},{"name":"Anne‐Claude Gingras","is_ca":true},{"name":"Alberto Martín","is_ca":true},{"name":"Haico van Attikum","is_ca":false},{"name":"Jos Jonkers","is_ca":false},{"name":"Christopher J. Lord","is_ca":false},{"name":"Sven Rottenberg","is_ca":false},{"name":"Daniel Durocher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008173557190835071,"gpt":0.2604839717396611,"spread":0.2523104145488261,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004075395,0.0005140033,0.0003523603,0.0003313823,0.0006286995,0.001029629,0.0003831509,0.0006711073,0.004661077],"category_scores_gemma":[0.0003424893,0.0003806718,0.0003159504,0.0001528096,0.0004694047,0.00078559,0.0007528529,0.0009620567,0.002251423],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009142556,"about_ca_system_score_gemma":0.0003456355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004394716,"about_ca_topic_score_gemma":0.0006966677,"domain_scores_codex":[0.9997396,0.00002805436,0.00001121471,0.00007042214,0.00008455937,0.00006614374],"domain_scores_gemma":[0.9997485,0.00003504851,0.00004797851,0.00005572302,0.000029749,0.00008290695],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001314012,0.000009576835,0.0002766648,0.00003861545,0.000008638766,0.00006621825,0.00001594986,0.0001216508,0.9948657,0.001777491,0.0003990285,0.002289074],"study_design_scores_gemma":[0.00000785924,0.00003311351,0.002551759,0.000004250657,0.000005484656,0.000221962,0.00001198279,0.0007561762,0.9916483,0.0004099674,0.00434266,0.000006515501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9301336,0.01061186,0.03307502,0.00162796,0.0004701177,0.00005252804,0.0008399058,0.001283493,0.02190548],"genre_scores_gemma":[0.9866114,0.001020808,0.002910767,0.0001185759,0.00003378711,0.000008611281,0.0004509855,0.0001162239,0.008728846],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004661077,"threshold_uncertainty_score":0.01559287,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2004864721","doi":"10.1016/s0092-8674(01)00195-7","title":"XRCC1 Stimulates Human Polynucleotide Kinase Activity at Damaged DNA Termini and Accelerates DNA Single-Strand Break Repair","year":2001,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":604,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Jewish General Hospital; University of Alberta","funders":"","keywords":"Biology; XRCC1; DNA ligase; DNA repair; DNA polymerase; DNA damage; Molecular biology; Replication protein A; DNA; Proliferating cell nuclear antigen; DDB1; Cell biology; Biochemistry; Ubiquitin ligase; Ubiquitin; DNA-binding protein; Gene; Transcription factor","authors":[{"name":"Claire J Whitehouse","is_ca":false},{"name":"Richard Taylor","is_ca":false},{"name":"Angela Thistlethwaite","is_ca":false},{"name":"Hong Zhang","is_ca":true},{"name":"Feridoun Karimi‐Busheri","is_ca":true},{"name":"Dana D. Lasko","is_ca":true},{"name":"Michael Weinfeld","is_ca":true},{"name":"Keith W. Caldecott","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01621110857991122,"gpt":0.2428975404827065,"spread":0.2266864319027953,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005906747,0.0009108311,0.0007406761,0.0007443967,0.0002471454,0.0006681478,0.000316433,0.0005637836,0.004206436],"category_scores_gemma":[0.0005810385,0.0005732327,0.0006358665,0.0004411627,0.0004136058,0.0005932206,0.0005806219,0.001080105,0.00159213],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000707927,"about_ca_system_score_gemma":0.0003854673,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007615369,"about_ca_topic_score_gemma":0.000761324,"domain_scores_codex":[0.9996662,0.00007574816,0.00002429128,0.00006528094,0.00004872494,0.0001196658],"domain_scores_gemma":[0.9995079,0.0001719158,0.00005711983,0.00008976086,0.00005211409,0.0001212982],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001558724,0.000121984,0.0002419563,0.0001715218,0.00002005055,0.0001359049,0.0000293838,0.00009014023,0.9944264,0.0002082608,0.0002934481,0.002702339],"study_design_scores_gemma":[0.0001306113,0.0004492609,0.004131551,0.00001177014,0.00002214322,0.000267787,0.00001982261,0.0003055991,0.9920784,0.00007194411,0.002503441,0.000007767148],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9657356,0.02070175,0.00535242,0.0007030111,0.0003735193,0.0001627199,0.001164886,0.0007939578,0.005012138],"genre_scores_gemma":[0.9746514,0.007618574,0.003576614,0.0002928219,0.0002220763,0.000103968,0.002652094,0.0001902046,0.01069237],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004206436,"threshold_uncertainty_score":0.014072,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2047824377","doi":"10.1016/j.molcel.2004.12.003","title":"Binding of Chromatin-Modifying Activities to Phosphorylated Histone H2A at DNA Damage Sites","year":2004,"lang":"en","type":"article","venue":"Molecular Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":571,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Hôtel-Dieu de Québec","funders":"National Institute of General Medical Sciences","keywords":"Biology; Chromatin; Histone; Histone H2A; Cell biology; Chromatin remodeling; DNA damage; Phosphorylation; DNA repair; Histone code; Histone H1; Acetylation; DNA; Molecular biology; Genetics; Nucleosome; Gene","authors":[{"name":"Jessica A. Downs","is_ca":false},{"name":"Stéphane Allard","is_ca":true},{"name":"Olivier Jobin‐Robitaille","is_ca":true},{"name":"Ali Javaheri","is_ca":false},{"name":"Andréanne Auger","is_ca":true},{"name":"Nathalie Bouchard","is_ca":true},{"name":"Stephen J. Kron","is_ca":false},{"name":"Stephen P. Jackson","is_ca":false},{"name":"Jacques Côté","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007620137845502015,"gpt":0.2365645932240885,"spread":0.2289444553785865,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003433661,0.0003921754,0.0003336539,0.0004011218,0.0006256445,0.0007633145,0.0004887216,0.0004160175,0.006533945],"category_scores_gemma":[0.0004751574,0.0005461294,0.000557419,0.0002902984,0.0003575931,0.0003888373,0.000588604,0.0006393843,0.001354655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005808735,"about_ca_system_score_gemma":0.0003591815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002175353,"about_ca_topic_score_gemma":0.002963852,"domain_scores_codex":[0.9997154,0.00004004549,0.00001031697,0.00006851279,0.00005316551,0.000112511],"domain_scores_gemma":[0.9997302,0.00007405184,0.00002212664,0.0000359069,0.00003383506,0.0001038099],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00052132,0.00005025232,0.0006191282,0.00007266852,0.00002035847,0.00007575784,0.00003497534,0.0001007257,0.9956074,0.0004083851,0.0001568736,0.0023321],"study_design_scores_gemma":[0.00003223728,0.0001564009,0.02295835,0.00001405916,0.00001543732,0.0002515122,0.00007537866,0.001211951,0.9721079,0.0002567834,0.002906481,0.00001354398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9807906,0.005414412,0.005629,0.0002544248,0.0001360516,0.00003735905,0.0003751935,0.0001262493,0.007236694],"genre_scores_gemma":[0.9924321,0.0006989649,0.00134644,0.00008477192,0.00004181788,0.00001955456,0.000739641,0.00002668024,0.004610097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006533945,"threshold_uncertainty_score":0.02185822,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3042118153","doi":"10.1016/j.cell.2020.05.040","title":"A Genetic Map of the Response to DNA Damage in Human Cells","year":2020,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":567,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada Research Chairs; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"European Research Council; National Institute of Environmental Health Sciences; Canadian Institutes of Health Research; National Institutes of Health; EMBO","keywords":"Biology; DNA damage; DNA; Genetics; Evolutionary biology; Computational biology; Cell biology","authors":[{"name":"Michele Olivieri","is_ca":true},{"name":"Tiffany Cho","is_ca":true},{"name":"Alejandro Álvarez-Quilón","is_ca":true},{"name":"Kejiao Li","is_ca":false},{"name":"Matthew J. Schellenberg","is_ca":false},{"name":"Michal Zimmermann","is_ca":true},{"name":"Nicole Hustedt","is_ca":true},{"name":"Silvia Emma Rossi","is_ca":true},{"name":"Salomé Adam","is_ca":true},{"name":"Henrique Melo","is_ca":true},{"name":"Anne Margriet Heijink","is_ca":true},{"name":"Guillermo Sastre-Moreno","is_ca":true},{"name":"Nathalie Moatti","is_ca":true},{"name":"Rachel K. Szilard","is_ca":true},{"name":"Andrea McEwan","is_ca":true},{"name":"Alexanda K. Ling","is_ca":true},{"name":"Almudena Serrano-Benítez","is_ca":false},{"name":"Tajinder Ubhi","is_ca":true},{"name":"Sumin Feng","is_ca":true},{"name":"Judy Pawling","is_ca":true},{"name":"Irene Delgado‐Sainz","is_ca":false},{"name":"Michael Ferguson","is_ca":true},{"name":"James W. Dennis","is_ca":true},{"name":"Grant W. Brown","is_ca":true},{"name":"Felipe Cortés‐Ledesma","is_ca":false},{"name":"R. Scott Williams","is_ca":false},{"name":"Alberto Martín","is_ca":true},{"name":"Dongyi Xu","is_ca":false},{"name":"Daniel Durocher","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008252576948802989,"gpt":0.2200961209170599,"spread":0.2118435439682569,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007998413,0.0002750958,0.0002873342,0.001200458,0.0003173154,0.0004495909,0.0002674632,0.0003225484,0.004277017],"category_scores_gemma":[0.0001723008,0.000268965,0.0003682335,0.0005292262,0.0002682242,0.0001832823,0.0001907051,0.0004259333,0.001375964],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002596804,"about_ca_system_score_gemma":0.000389164,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002808079,"about_ca_topic_score_gemma":0.001344479,"domain_scores_codex":[0.9999199,0.00001244657,0.000004188446,0.00002090061,0.00002071713,0.00002181243],"domain_scores_gemma":[0.9998491,0.00006445943,0.00001538164,0.00001508367,0.00002512415,0.0000308772],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00133163,0.00008518957,0.001420456,0.0001616118,0.00003271,0.0007724178,0.00009919923,0.0005009412,0.9800391,0.002109153,0.0006415839,0.01280606],"study_design_scores_gemma":[0.0001465329,0.001400854,0.09629919,0.00007235973,0.0001944,0.004051943,0.0002734633,0.002041305,0.8584291,0.004805237,0.03224599,0.00003961116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.921665,0.01349623,0.02512274,0.001550304,0.0002111411,0.0002636818,0.00508676,0.0009082359,0.03169577],"genre_scores_gemma":[0.9786785,0.003834146,0.004584463,0.0002628918,0.00006378988,0.00008686111,0.002243754,0.00004305998,0.01020249],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004277017,"threshold_uncertainty_score":0.01430804,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2140345256","doi":"10.1016/j.molcel.2013.11.003","title":"DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities","year":2013,"lang":"en","type":"article","venue":"Molecular Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":567,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Hôtel-Dieu de Québec; University of Toronto","funders":"National Institute of General Medical Sciences; National Institute for Health and Care Research; Canadian Institutes of Health Research; National Cancer Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Wellcome Trust","keywords":"Biology; Exonuclease; Rad50; Nuclease; DNA repair; Replication protein A; Homologous recombination; Endonuclease; Non-homologous end joining; Chromatin; Cell biology; DNA repair protein XRCC4; DNA; Genetics; Molecular biology; DNA mismatch repair; DNA-binding protein; Polymerase; Gene; Transcription factor","authors":[{"name":"Atsushi Shibata","is_ca":false},{"name":"Davide Moiani","is_ca":false},{"name":"A.S. Arvai","is_ca":false},{"name":"J. Jefferson P. Perry","is_ca":false},{"name":"Shane M. Harding","is_ca":true},{"name":"Marie‐Michelle Genois","is_ca":true},{"name":"Ranjan Maity","is_ca":true},{"name":"Sari van Rossum-Fikkert","is_ca":false},{"name":"Aryandi Kertokalio","is_ca":false},{"name":"F Romoli","is_ca":false},{"name":"M. Ismail","is_ca":false},{"name":"Ermal Ismalaj","is_ca":false},{"name":"Elena Petricci","is_ca":false},{"name":"Matthew J. Neale","is_ca":false},{"name":"Robert G. Bristow","is_ca":true},{"name":"Jean‐Yves Masson","is_ca":true},{"name":"Claire Wyman","is_ca":false},{"name":"Penny A. Jeggo","is_ca":false},{"name":"John A. Tainer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004843619110035483,"gpt":0.1976260333571322,"spread":0.1927824142470968,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006618198,0.0003445395,0.0003965552,0.0004726823,0.0002069976,0.001270492,0.0003162668,0.0005316559,0.001686716],"category_scores_gemma":[0.0007144885,0.0004660216,0.0004192187,0.0001939008,0.0005021368,0.0006696781,0.0005739866,0.0008608573,0.000749978],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005223537,"about_ca_system_score_gemma":0.0002657474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003199232,"about_ca_topic_score_gemma":0.0006139512,"domain_scores_codex":[0.9992567,0.00009199017,0.00009428165,0.000220223,0.0001639494,0.000173002],"domain_scores_gemma":[0.9991773,0.0002595207,0.0001753716,0.0001018645,0.0001227248,0.0001632479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001722985,0.00001163013,0.0005913833,0.00001371618,0.000003801444,0.00001942048,0.00001307935,0.00005051967,0.9978429,0.000347153,0.00001511286,0.0009189849],"study_design_scores_gemma":[0.000007642573,0.00008415056,0.00900592,0.000003666576,0.00001012318,0.0002290931,0.00004876596,0.0008298323,0.989057,0.0001050767,0.0006067496,0.00001192662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927347,0.000787443,0.004865791,0.00008433621,0.00001985723,0.000012093,0.0001742631,0.00005753726,0.001264032],"genre_scores_gemma":[0.9953976,0.0003419638,0.002131246,0.00003426839,0.000004671395,0.00001419393,0.0002502789,0.0000330202,0.001792762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001686716,"threshold_uncertainty_score":0.005642653,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2102604046","doi":"10.1016/j.cell.2004.11.037","title":"INO80 and γ-H2AX Interaction Links ATP-Dependent Chromatin Remodeling to DNA Damage Repair","year":2004,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":564,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of Environmental Health Sciences; National Cancer Institute","keywords":"Chromatin remodeling; Biology; Chromatin; Cell biology; DNA repair; Histone; DNA damage; Chromatin structure remodeling (RSC) complex; SWI/SNF; DNA supercoil; Genetics; DNA; DNA replication","authors":[{"name":"Ashby J. Morrison","is_ca":false},{"name":"Jessica Highland","is_ca":false},{"name":"Nevan J. Krogan","is_ca":true},{"name":"Ayelet Arbel‐Eden","is_ca":false},{"name":"Jack Greenblatt","is_ca":true},{"name":"James E. Haber","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009340125640273386,"gpt":0.2397807547099789,"spread":0.2304406290697056,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002124625,0.0004333142,0.0003534498,0.0004578064,0.0005506767,0.0009521957,0.000806827,0.0007811047,0.004149699],"category_scores_gemma":[0.000433628,0.000480215,0.0002396946,0.0002384464,0.0006687467,0.0009501862,0.0009787664,0.0007465043,0.001227182],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004996462,"about_ca_system_score_gemma":0.0002470658,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006657252,"about_ca_topic_score_gemma":0.0009843933,"domain_scores_codex":[0.9998641,0.00001510946,0.000005615672,0.00003122257,0.0000309511,0.00005293854],"domain_scores_gemma":[0.9998062,0.00004459876,0.00003091978,0.0000374412,0.00002253851,0.00005832039],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004117113,0.00005886838,0.0008730761,0.00007219132,0.00001630049,0.000217487,0.00004931215,0.0001595804,0.9899791,0.001966601,0.0004982327,0.005697441],"study_design_scores_gemma":[0.00004367692,0.0001173378,0.02282187,0.00001318743,0.00001976114,0.0003784762,0.0001650602,0.001498008,0.9667573,0.002110283,0.00605905,0.00001596625],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9695193,0.006891509,0.008708335,0.001100581,0.0002366893,0.00003743362,0.0004385211,0.0004093644,0.01265821],"genre_scores_gemma":[0.9900534,0.001151634,0.001217051,0.000154945,0.00004526025,0.00002534501,0.0004210291,0.00004835563,0.006883105],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004149699,"threshold_uncertainty_score":0.01388216,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2167858141","doi":"10.1038/emboj.2008.15","title":"DNA‐damage repair; the good, the bad, and the ugly","year":2008,"lang":"en","type":"review","venue":"The EMBO Journal","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":544,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto","funders":"National Cancer Institute; Canadian Institutes of Health Research; Cancer Research Society","keywords":"Biology; DNA damage; DNA repair; Genetics; DNA; Computational biology","authors":[{"name":"Razqallah Hakem","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01775757215273734,"gpt":0.2763923918539467,"spread":0.2586348197012093,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001315908,0.001613487,0.002958228,0.00231652,0.0006811072,0.002319286,0.002448406,0.003634201,0.00387791],"category_scores_gemma":[0.001258582,0.0005426042,0.0004798025,0.003180064,0.002038028,0.003272898,0.001124248,0.003937279,0.004513997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001537979,"about_ca_system_score_gemma":0.001530365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001397256,"about_ca_topic_score_gemma":0.002618135,"domain_scores_codex":[0.9996328,0.00006821714,0.00004054267,0.00007437656,0.0001439677,0.00004011113],"domain_scores_gemma":[0.9994173,0.0002478729,0.00007251884,0.00002643272,0.0001494432,0.00008648574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001521464,0.00007895775,0.0001615704,0.009367394,0.00009406309,0.0003878367,0.00007095238,0.0004386862,0.002193094,0.01059689,0.1280893,0.848369],"study_design_scores_gemma":[0.00001936616,0.00003097422,0.000236903,0.001096616,0.00004916209,0.001046637,0.00006646806,0.00006467593,0.0003372349,0.004162792,0.9928726,0.00001649352],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00003934338,0.9981173,0.0001664172,0.0006207449,0.0004320242,0.000002041696,0.000009259072,0.00000900362,0.0006038546],"genre_scores_gemma":[0.0004651467,0.9976621,0.0001897968,0.0004858012,0.0003475805,0.000004737569,0.00001736327,0.000001980265,0.0008255092],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00387791,"threshold_uncertainty_score":0.01297289,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2058274661","doi":"10.1038/ncb2549","title":"Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress","year":2012,"lang":"en","type":"article","venue":"Nature Cell Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":528,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Human Genome Research Institute; Canadian Institutes of Health Research","keywords":"DNA damage; Replication (statistics); Cell biology; DNA replication; DNA; Eukaryotic DNA replication; Biology; Control of chromosome duplication; Fight-or-flight response; Computational biology; Genetics; Gene; Virology","authors":[{"name":"Johnny M. Tkach","is_ca":true},{"name":"Askar Yimit","is_ca":true},{"name":"Anna Y. Lee","is_ca":true},{"name":"Michael Riffle","is_ca":false},{"name":"Michael Costanzo","is_ca":true},{"name":"Daniel Jaschob","is_ca":false},{"name":"Jason A. Hendry","is_ca":true},{"name":"Jiongwen Ou","is_ca":true},{"name":"Jason Moffat","is_ca":true},{"name":"Charles Boone","is_ca":true},{"name":"Trisha N. Davis","is_ca":false},{"name":"Corey Nislow","is_ca":true},{"name":"Grant W. Brown","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005349482665476333,"gpt":0.2386110189045187,"spread":0.2332615362390423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001914153,0.0002651532,0.0003428671,0.0003854524,0.0003807131,0.0006253842,0.0002631635,0.0004053703,0.001197132],"category_scores_gemma":[0.0001995966,0.0002766573,0.0002880116,0.0004185463,0.0003506782,0.0007665885,0.0003053629,0.0008638408,0.0005796857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000368358,"about_ca_system_score_gemma":0.0001549253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008525602,"about_ca_topic_score_gemma":0.001367739,"domain_scores_codex":[0.9998902,0.000009012881,0.000007597355,0.00003255679,0.00002486759,0.00003566231],"domain_scores_gemma":[0.9997851,0.0000491582,0.00004605706,0.00001996555,0.0000466612,0.00005305212],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008534537,0.000005116114,0.0002524144,0.00001253704,0.000002948328,0.00001445417,0.00001291583,0.00001823867,0.9992123,0.00001645547,0.00001293392,0.0003543639],"study_design_scores_gemma":[0.0000123854,0.0001464271,0.03712829,0.000004877735,0.00002430924,0.0002259215,0.0001442468,0.002223673,0.9588222,0.0001677323,0.001084009,0.00001593805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903961,0.001682758,0.00596519,0.0001915567,0.0000417647,0.00002330042,0.0007186641,0.00008009708,0.0009004595],"genre_scores_gemma":[0.9881858,0.001507912,0.005868723,0.0001212139,0.00005034442,0.00006629722,0.001115522,0.00006853054,0.003015679],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001197132,"threshold_uncertainty_score":0.004004776,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1975485903","doi":"10.1016/j.freeradbiomed.2010.03.025","title":"Oxidatively generated base damage to cellular DNA","year":2010,"lang":"en","type":"review","venue":"Free Radical Biology and Medicine","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":524,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Nucleobase; DNA damage; Chemistry; Singlet oxygen; DNA; Reactive oxygen species; Deoxyribose; DNA oxidation; Biophysics; Oxidative stress; Hydroxyl radical; Photochemistry; Oxygen; Biochemistry; Radical; Organic chemistry","authors":[{"name":"Jean Cadet","is_ca":true},{"name":"Thierry Douki","is_ca":false},{"name":"Jean‐Luc Ravanat","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02433888684971687,"gpt":0.3131143751325124,"spread":0.2887754882827956,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005536494,0.001234914,0.001434813,0.001357883,0.0004087086,0.001045155,0.001312826,0.001433337,0.002589113],"category_scores_gemma":[0.000480197,0.0003277992,0.0003473789,0.00187712,0.0009403474,0.001404346,0.0007914818,0.00172244,0.002774378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007604923,"about_ca_system_score_gemma":0.001027734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008662996,"about_ca_topic_score_gemma":0.001674934,"domain_scores_codex":[0.9998299,0.00002219839,0.00001746331,0.00003987902,0.00006997232,0.00002050026],"domain_scores_gemma":[0.99979,0.00007119519,0.00003202488,0.00001271462,0.00007317584,0.00002090886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006115262,0.00006710723,0.000106868,0.008067748,0.00004866114,0.0002336544,0.00004650258,0.0002914755,0.006742653,0.004050712,0.02992553,0.9503579],"study_design_scores_gemma":[0.00001378226,0.00006109151,0.0003561676,0.00101762,0.00005733945,0.001218685,0.00004898805,0.00008185377,0.003384367,0.003221556,0.9905217,0.00001693547],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002206376,0.9960228,0.0007517893,0.0003203958,0.0006718092,0.00000821377,0.00001568349,0.00001397516,0.001974646],"genre_scores_gemma":[0.00110113,0.9958928,0.000415895,0.0002048867,0.0003751485,0.000009120917,0.00002415732,0.000002350407,0.001974423],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002589113,"threshold_uncertainty_score":0.008661449,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100730597","doi":"10.1083/jcb.200510015","title":"Changes in chromatin structure and mobility in living cells at sites of DNA double-strand breaks","year":2006,"lang":"en","type":"article","venue":"The Journal of Cell Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":511,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"National Institutes of Health","keywords":"Chromatin; Cell biology; DNA damage; Histone; Chromatin remodeling; DNA; DNA repair; Biology; Molecular biology; Chemistry; Biophysics; Genetics","authors":[{"name":"Michael J. Kruhlak","is_ca":false},{"name":"Arkady Celeste","is_ca":false},{"name":"Graham Dellaire","is_ca":true},{"name":"Óscar Fernández-Capetillo","is_ca":false},{"name":"Waltraud G. Müller","is_ca":false},{"name":"James G. McNally","is_ca":false},{"name":"David P. Bazett‐Jones","is_ca":true},{"name":"André Nussenzweig","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005883184015560718,"gpt":0.2164333072902251,"spread":0.2105501232746644,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001672194,0.0001853181,0.000215143,0.0003442424,0.0003240973,0.0003505092,0.0003602514,0.0003933335,0.001639925],"category_scores_gemma":[0.0001333637,0.0001985738,0.0001947788,0.0002757138,0.000464008,0.000364673,0.0003016608,0.0005740509,0.0004241363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002879899,"about_ca_system_score_gemma":0.0001023537,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005075163,"about_ca_topic_score_gemma":0.000891638,"domain_scores_codex":[0.999858,0.00001628665,0.000008876206,0.00005737021,0.00003871562,0.00002070641],"domain_scores_gemma":[0.999874,0.00002730215,0.00003483915,0.00001850339,0.00001401941,0.00003130285],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004001316,0.00001704656,0.0004496632,0.00003666327,0.000008115656,0.00004271464,0.00004610676,0.00004929904,0.9977591,0.0001228797,0.00006008823,0.001368373],"study_design_scores_gemma":[0.00002706647,0.0002547977,0.03576262,0.00002143068,0.00002681836,0.0007177771,0.000197166,0.001818854,0.9560784,0.0004260755,0.004643167,0.00002593724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9749452,0.00444728,0.01629041,0.0002681018,0.0001291704,0.0000271104,0.0008862608,0.0001508243,0.002855723],"genre_scores_gemma":[0.9802793,0.002894192,0.01141133,0.0001422251,0.00006347273,0.0001068757,0.001029851,0.00003704161,0.004035731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001639925,"threshold_uncertainty_score":0.005486131,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1987615467","doi":"10.1016/j.cell.2008.08.017","title":"Mre11 Dimers Coordinate DNA End Bridging and Nuclease Processing in Double-Strand-Break Repair","year":2008,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":481,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Lawrence Berkeley National Laboratory; National Cancer Institute; U.S. Department of Energy; Skaggs Institute for Chemical Biology, Scripps Research Institute; Alberta Heritage Foundation for Medical Research; Canadian Institutes of Health Research; Uehara Memorial Foundation; Heritage Medical Research Institute","keywords":"Biology; Rad50; DNA repair; Replication protein A; Homologous recombination; DNA; Nuclease; Cell biology; Homology directed repair; Molecular biology; Genetics; Nucleotide excision repair; DNA-binding protein; Gene; Transcription factor","authors":[{"name":"R. Scott Williams","is_ca":false},{"name":"Gabriel Moncalián","is_ca":false},{"name":"Jessica S. Williams","is_ca":false},{"name":"Yoshiki Yamada","is_ca":false},{"name":"Oliver Limbo","is_ca":false},{"name":"David Shin","is_ca":false},{"name":"Lynda Groocock","is_ca":false},{"name":"Dana Cahill","is_ca":false},{"name":"Chiharu Hitomi","is_ca":false},{"name":"Grant Guenther","is_ca":false},{"name":"Davide Moiani","is_ca":false},{"name":"James P. Carney","is_ca":false},{"name":"Paul Russell","is_ca":false},{"name":"John A. Tainer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01030389072779447,"gpt":0.2175176525811019,"spread":0.2072137618533074,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005222159,0.0004795659,0.0005745805,0.0003309525,0.0006030808,0.001878503,0.0005262475,0.001061701,0.002064161],"category_scores_gemma":[0.0005136768,0.0007473835,0.0002392937,0.0002255668,0.0004302197,0.001422894,0.0006932116,0.001118301,0.00163302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000541148,"about_ca_system_score_gemma":0.000226556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002171654,"about_ca_topic_score_gemma":0.0004344994,"domain_scores_codex":[0.9995772,0.00007734969,0.00003463448,0.0001430785,0.00008888794,0.00007872805],"domain_scores_gemma":[0.9995884,0.00007643947,0.0001018637,0.00007473345,0.00007518553,0.00008334273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002106361,0.00002916584,0.0003251502,0.00003966686,0.000004899369,0.0001160865,0.00006046231,0.0002484,0.9944652,0.001628347,0.000219868,0.00265218],"study_design_scores_gemma":[0.00001105284,0.00006059257,0.001598191,0.000004452866,0.000005615342,0.0002176496,0.00007644061,0.001459788,0.9925168,0.0003291235,0.003710113,0.00001034211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9466868,0.008501358,0.03740492,0.0008780049,0.0002008347,0.00005046102,0.00023441,0.0005495572,0.005493628],"genre_scores_gemma":[0.9753607,0.001525887,0.01252961,0.0001302922,0.00005039088,0.00003117647,0.0003395173,0.00009372725,0.009938767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002064161,"threshold_uncertainty_score":0.006905317,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2081702399","doi":"10.1038/nature04384","title":"A phosphatase complex that dephosphorylates γH2AX regulates DNA damage checkpoint recovery","year":2005,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":477,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"","keywords":"G2-M DNA damage checkpoint; Biology; Histone; Cell biology; Chromatin; DNA damage; DNA repair; Histone H2A; Histone methyltransferase; CHEK1; Dephosphorylation; Phosphorylation; Phosphatase; Molecular biology; Biochemistry; DNA; Cell cycle checkpoint; Cell cycle; Gene","authors":[{"name":"Michael‐Christopher Keogh","is_ca":false},{"name":"Jung‐Ae Kim","is_ca":false},{"name":"Michael Downey","is_ca":true},{"name":"Jeffrey Fillingham","is_ca":true},{"name":"Dipanjan Chowdhury","is_ca":false},{"name":"Jacob C. Harrison","is_ca":false},{"name":"Megumi Onishi","is_ca":false},{"name":"Nira Datta","is_ca":true},{"name":"Sarah Galicia","is_ca":true},{"name":"Andrew Emili","is_ca":true},{"name":"Judy Lieberman","is_ca":false},{"name":"Stephen Buratowski","is_ca":false},{"name":"James E. Haber","is_ca":false},{"name":"Daniel Durocher","is_ca":true},{"name":"Jack Greenblatt","is_ca":true},{"name":"Nevan J. Krogan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008626547289009804,"gpt":0.2395846407269522,"spread":0.2309580934379424,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003019503,0.0007611622,0.0002991149,0.0005089469,0.0004629894,0.001169578,0.000574229,0.0003955311,0.00222419],"category_scores_gemma":[0.0002571707,0.0006348611,0.0003467314,0.0002574035,0.0005197017,0.0005965104,0.0005764235,0.000739678,0.0008466851],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001038673,"about_ca_system_score_gemma":0.0004394316,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008491558,"about_ca_topic_score_gemma":0.001744143,"domain_scores_codex":[0.9998374,0.00001067647,0.00000900359,0.0000583023,0.00004146027,0.00004300435],"domain_scores_gemma":[0.9998974,0.00001183407,0.00001907231,0.00001758438,0.00001438495,0.00003976444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002492209,0.00003013349,0.0002394134,0.00005343125,0.00001195534,0.00007155144,0.00001122123,0.0001395175,0.995462,0.000892045,0.0002643411,0.002575139],"study_design_scores_gemma":[0.00003766107,0.00005513184,0.002337002,0.000004184691,0.00001647221,0.0002134042,0.00001604598,0.001438734,0.9922155,0.0003453729,0.003313719,0.000006948112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9521941,0.008722578,0.02586838,0.0007955719,0.0004123393,0.0001122212,0.0008244726,0.000832961,0.01023727],"genre_scores_gemma":[0.986864,0.001867195,0.003679912,0.00008005674,0.00004106194,0.00003967112,0.0004291989,0.00009181737,0.006906972],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00222419,"threshold_uncertainty_score":0.007536113,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2202899490","doi":"10.1038/nature16142","title":"RETRACTED ARTICLE: A mechanism for the suppression of homologous recombination in G1 cells","year":2015,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":476,"is_retracted":true,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"National Cancer Institute; Canadian Institutes of Health Research; Centers for Disease Control and Prevention","keywords":"Homologous recombination; RAD51; Non-homologous end joining; DNA repair; Homology directed repair; Cell biology; Biology; Homologous chromosome; Genetics; PALB2; DNA; Molecular biology; Chemistry; Gene; Mutation; DNA mismatch repair; Germline mutation","authors":[{"name":"Alexandre Orthwein","is_ca":true},{"name":"Sylvie M. Noordermeer","is_ca":true},{"name":"Marcus D. Wilson","is_ca":true},{"name":"Sébastien Landry","is_ca":true},{"name":"Radoslav I. Enchev","is_ca":false},{"name":"Alana Sherker","is_ca":true},{"name":"Meagan Munro","is_ca":true},{"name":"Jordan Pinder","is_ca":true},{"name":"Jayme Salsman","is_ca":true},{"name":"Graham Dellaire","is_ca":true},{"name":"Bing Xia","is_ca":false},{"name":"Matthias Peter","is_ca":false},{"name":"Daniel Durocher","is_ca":true}],"retraction":{"nature":"Retraction","openalex_flagged":true},"screen_n_in":null,"score":{"opus":0.009263872785198789,"gpt":0.2586555024549594,"spread":0.2493916296697606,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00293468,0.001346688,0.001026195,0.002679874,0.002140917,0.00259697,0.004473661,0.008897669,0.01660979],"category_scores_gemma":[0.01323744,0.0006934858,0.001220756,0.001432413,0.002213845,0.00198615,0.001490184,0.006687686,0.01080859],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003217725,"about_ca_system_score_gemma":0.00202818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002303906,"about_ca_topic_score_gemma":0.002163481,"domain_scores_codex":[0.9976966,0.0002931257,0.0003489413,0.0003139126,0.001071185,0.0002762805],"domain_scores_gemma":[0.9913475,0.002899001,0.000702769,0.0009303982,0.003135067,0.0009853323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005249702,0.0001269939,0.0008597765,0.001035037,0.0001363714,0.005815692,0.000279215,0.0003414467,0.01547043,0.009042864,0.8832192,0.08314802],"study_design_scores_gemma":[0.00006914814,0.0002382502,0.002651422,0.000235503,0.0001505697,0.005018504,0.0001495624,0.0008149386,0.02751742,0.004384783,0.9586866,0.00008324464],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"editorial","genre_gemma":"empirical","genre_scores_codex":[0.006917836,0.01207861,0.008254908,0.1561481,0.8051954,0.0001011927,0.001116637,0.001333493,0.008853727],"genre_scores_gemma":[0.1247715,0.03117123,0.01591738,0.1308256,0.4481594,0.0002271905,0.004089193,0.00156844,0.2432701],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01660979,"threshold_uncertainty_score":0.0555653,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045164156","doi":"10.1016/j.dnarep.2004.03.029","title":"DNA damage-induced activation of ATM and ATM-dependent signaling pathways","year":2004,"lang":"en","type":"review","venue":"DNA repair","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":470,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Cancer Institute; Canadian Institutes of Health Research; U.S. Department of Defense","keywords":"DNA damage; Biology; Signal transduction; Cell biology; Ataxia-telangiectasia; Phosphorylation; DNA repair; Cell cycle; DNA; Cell; Genetics","authors":[{"name":"Ebba U. Kurz","is_ca":true},{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03399869984866833,"gpt":0.2840033172210316,"spread":0.2500046173723632,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000434765,0.001294033,0.00164952,0.001264709,0.0003359437,0.00132791,0.001511349,0.001137858,0.002916628],"category_scores_gemma":[0.0003317941,0.0002969789,0.0004092004,0.001622346,0.0004969654,0.001117974,0.0005105357,0.00194796,0.003418135],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008014464,"about_ca_system_score_gemma":0.0008474664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006876735,"about_ca_topic_score_gemma":0.001151443,"domain_scores_codex":[0.9998304,0.00001929521,0.00001821865,0.00004013965,0.00006862282,0.00002327793],"domain_scores_gemma":[0.9998215,0.00005215656,0.00002769113,0.000009517783,0.00006764916,0.00002148448],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001866032,0.0001024696,0.0002289152,0.01026065,0.00008164583,0.0005815546,0.0000477284,0.0005814324,0.03000398,0.004588534,0.0285233,0.9248132],"study_design_scores_gemma":[0.00002897668,0.0001063255,0.001285161,0.001019605,0.0001124531,0.002390479,0.00007053098,0.0001670751,0.01380065,0.002620864,0.978367,0.00003082616],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004999021,0.9944014,0.001179313,0.0003126375,0.0004461713,0.00001210748,0.00004997374,0.00003729659,0.003061225],"genre_scores_gemma":[0.002082609,0.9938559,0.0007779544,0.0002473807,0.0002157769,0.00001665887,0.0001065343,0.000003606425,0.002693522],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002916628,"threshold_uncertainty_score":0.009757102,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070582215","doi":"10.1038/nrm2651","title":"The emerging role of nuclear architecture in DNA repair and genome maintenance","year":2009,"lang":"en","type":"review","venue":"Nature Reviews Molecular Cell Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":463,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; National Cancer Institute; National Institutes of Health; Centre National de la Recherche Scientifique","keywords":"Chromatin; DNA repair; Genome; Biology; Computational biology; DNA damage; DNA; Genome instability; Genetics; Cell biology; Gene","authors":[{"name":"Tom Misteli","is_ca":false},{"name":"Evi Soutoglou","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005714917650166134,"gpt":0.2625691240664471,"spread":0.2568542064162809,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001319017,0.001138113,0.002248959,0.001260333,0.0004951342,0.001939385,0.001916335,0.002817098,0.002020617],"category_scores_gemma":[0.001045455,0.0004893114,0.0004042673,0.002478102,0.002454611,0.003434732,0.001488294,0.003369736,0.001782812],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001528473,"about_ca_system_score_gemma":0.001300637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001624411,"about_ca_topic_score_gemma":0.002392724,"domain_scores_codex":[0.9996876,0.00004566757,0.00003353938,0.0000668471,0.0001288792,0.00003767012],"domain_scores_gemma":[0.9993712,0.0003178025,0.00005959867,0.00002667882,0.0001612685,0.00006340852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001447427,0.000042149,0.0002292713,0.009215293,0.00009523285,0.0003511065,0.0001021643,0.001401321,0.01089672,0.01998929,0.03845154,0.9190812],"study_design_scores_gemma":[0.00002369961,0.00004834537,0.0007431229,0.0009148403,0.00006650551,0.00115438,0.0001147412,0.0002570777,0.001423802,0.01323242,0.9819866,0.00003457936],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001409108,0.9976696,0.0006065569,0.0005120534,0.0003155074,0.00000203978,0.00001060902,0.00001127062,0.000731467],"genre_scores_gemma":[0.001128542,0.9972557,0.0004481122,0.0003306344,0.0003293149,0.000003780247,0.00002055021,0.00000224801,0.0004811101],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002817098,"threshold_uncertainty_score":0.01108986,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2152745581","doi":"10.1139/o03-042","title":"Characteristics of γ-H2AX foci at DNA double-strand breaks sites","year":2003,"lang":"en","type":"review","venue":"Biochemistry and Cell Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":454,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"DNA damage; Biology; DNA; DNA repair; Homologous recombination; Serine; Phosphorylation; Cell biology; Genetics; Molecular biology","authors":[{"name":"Duane R. Pilch","is_ca":false},{"name":"Olga A. Sedelnikova","is_ca":false},{"name":"Christophe E. Redon","is_ca":false},{"name":"Arkady Celeste","is_ca":false},{"name":"André Nussenzweig","is_ca":false},{"name":"William M. Bonner","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01813080219657804,"gpt":0.2647071020267086,"spread":0.2465762998301305,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000339191,0.001060019,0.001260543,0.002252559,0.0002575559,0.0009117085,0.0009707392,0.0009508296,0.003668812],"category_scores_gemma":[0.0004735554,0.0002929762,0.0002746431,0.002295371,0.000608084,0.001250195,0.0004112368,0.0008895958,0.004803347],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007500033,"about_ca_system_score_gemma":0.0005032293,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001102121,"about_ca_topic_score_gemma":0.001275126,"domain_scores_codex":[0.9998597,0.00001640755,0.00001463338,0.00003833049,0.00005997221,0.00001088799],"domain_scores_gemma":[0.9998042,0.00005042513,0.00003268811,0.00001017099,0.00008109217,0.00002153769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009458736,0.00005115673,0.0004305369,0.007837142,0.00004911047,0.0003601427,0.00005975788,0.0004492501,0.007608318,0.002863662,0.02299581,0.9572006],"study_design_scores_gemma":[0.00001237312,0.00006779861,0.001882163,0.000777692,0.00004435973,0.002970214,0.00005417116,0.000103081,0.002993958,0.001409561,0.9896641,0.00002053002],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004782369,0.9937517,0.0005374138,0.0002172549,0.0002491251,0.000007931084,0.00003996899,0.00002504927,0.004693371],"genre_scores_gemma":[0.00234547,0.992377,0.000518015,0.0001489082,0.0001349971,0.00001151273,0.00006672811,0.000004336289,0.004393004],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003668812,"threshold_uncertainty_score":0.01227343,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2883789961","doi":"10.1038/s41586-018-0324-7","title":"53BP1–RIF1–shieldin counteracts DSB resection through CST- and Polα-dependent fill-in","year":2018,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":446,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"National Institute of General Medical Sciences; National Cancer Institute; Nature","keywords":"Polymerase; RAD51; Homologous recombination; DNA polymerase; Poly ADP ribose polymerase; Molecular biology; DNA damage; DNA repair; PARP1; Biology; DNA replication; Chemistry; DNA; Cell biology; Genetics","authors":[{"name":"Zachary Mirman","is_ca":false},{"name":"Francisca Lottersberger","is_ca":false},{"name":"Hiroyuki Takai","is_ca":false},{"name":"Tatsuya Kibe","is_ca":false},{"name":"Yi Gong","is_ca":false},{"name":"Kaori Takai","is_ca":false},{"name":"Alessandro Bianchi","is_ca":false},{"name":"Michal Zimmermann","is_ca":true},{"name":"Daniel Durocher","is_ca":true},{"name":"Titia de Lange","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006212754464901052,"gpt":0.275175890281578,"spread":0.2689631358166769,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003073862,0.0005710963,0.0004586846,0.000243686,0.0001971839,0.0004898368,0.0003521689,0.0004489475,0.006732144],"category_scores_gemma":[0.000243685,0.0003233717,0.0003907193,0.0001056455,0.0004655302,0.0002372889,0.0004094754,0.001098237,0.001859403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003574571,"about_ca_system_score_gemma":0.0003575137,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004760707,"about_ca_topic_score_gemma":0.0008935448,"domain_scores_codex":[0.9997537,0.00003684129,0.00002206795,0.0000532719,0.00005641425,0.00007778488],"domain_scores_gemma":[0.9997117,0.00003902484,0.00008275208,0.00005139942,0.0000187399,0.00009639047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008034117,0.00008257595,0.0001563036,0.00005744299,0.00001654647,0.00004554957,0.000009571047,0.0001595204,0.9959157,0.0001705746,0.0002688685,0.00231395],"study_design_scores_gemma":[0.00007676674,0.0004154659,0.002323293,0.000007248494,0.00001337686,0.0001627044,0.00002024353,0.0007460372,0.9932301,0.00005697985,0.002942303,0.000005465531],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894828,0.00216065,0.002636152,0.0004860034,0.0001659529,0.00003150457,0.0005899326,0.0004763742,0.003970786],"genre_scores_gemma":[0.9937631,0.0003889667,0.0008726906,0.0001062508,0.00001957632,0.00001877038,0.00053546,0.00005825707,0.004236924],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006732144,"threshold_uncertainty_score":0.02252126,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2072358340","doi":"10.1038/nature03314","title":"Defective DNA single-strand break repair in spinocerebellar ataxia with axonal neuropathy-1","year":2005,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":419,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Cancer Foundation","funders":"National Institute of General Medical Sciences; Medical Research Council; Sir Richard Stapley Educational Trust","keywords":"Spinocerebellar ataxia; DNA repair; Biology; Genome instability; Cell biology; Genetics; Mutation; Chromosome instability; DNA replication; DNA damage; DNA; Chemistry; Chromosome; Gene","authors":[{"name":"Sherif F. El‐Khamisy","is_ca":false},{"name":"Gulam Mustafa Saifi","is_ca":false},{"name":"Michael Weinfeld","is_ca":true},{"name":"Fredrik Johansson","is_ca":false},{"name":"Thomas Helleday","is_ca":false},{"name":"James R. Lupski","is_ca":false},{"name":"Keith W. Caldecott","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004468290063457192,"gpt":0.2117507773451083,"spread":0.2072824872816511,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003479634,0.0005494111,0.0004477685,0.001026999,0.0004018076,0.0003845838,0.0006598237,0.0007395895,0.001983068],"category_scores_gemma":[0.000355339,0.0003921339,0.0002709675,0.0004386026,0.000511283,0.0004174367,0.0003794013,0.0005654104,0.000360035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005593144,"about_ca_system_score_gemma":0.0003200263,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00273709,"about_ca_topic_score_gemma":0.002071718,"domain_scores_codex":[0.9998197,0.00003886051,0.00002757515,0.00003078978,0.00004961639,0.0000335519],"domain_scores_gemma":[0.9997283,0.00006904669,0.00008967103,0.00002569628,0.00002465013,0.0000627207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003462651,0.0005677015,0.02235148,0.0004710117,0.0001508712,0.01614891,0.0002637904,0.002133193,0.9329436,0.003983955,0.001555683,0.01596714],"study_design_scores_gemma":[0.0003394157,0.003398065,0.2671655,0.00009760397,0.0005151986,0.0701516,0.0006290518,0.007591647,0.6351413,0.004991602,0.009880198,0.00009879273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945141,0.0026465,0.0007548505,0.000152763,0.00004239921,0.00001627468,0.000186801,0.00004761502,0.001638697],"genre_scores_gemma":[0.9969111,0.0009506909,0.0002892619,0.00003573698,0.00001617946,0.000008465042,0.0001736849,0.000007345353,0.001607515],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00273709,"threshold_uncertainty_score":0.006634057,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110902629","doi":"10.1146/annurev.biochem.69.1.829","title":"Regulation of Chromosome Replication","year":2000,"lang":"en","type":"review","venue":"Annual Review of Biochemistry","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":400,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"DNA re-replication; DNA replication; Biology; Eukaryotic DNA replication; Pre-replication complex; Origin recognition complex; Genome; Genetics; Control of chromosome duplication; Cell biology; Gene duplication; DNA repair; Cell cycle; G2-M DNA damage checkpoint; Computational biology; DNA; Cell cycle checkpoint; Cell; Gene","authors":[{"name":"Thomas J. Kelly","is_ca":false},{"name":"Grant W. Brown","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0130876940810233,"gpt":0.3138987316878761,"spread":0.3008110376068528,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005347815,0.001195075,0.00123735,0.001309507,0.0006770239,0.001922757,0.001477327,0.001641333,0.001721821],"category_scores_gemma":[0.0004767649,0.0004131428,0.0004313183,0.001068253,0.001202253,0.001187331,0.001191744,0.001257739,0.00437978],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001383588,"about_ca_system_score_gemma":0.001003444,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009434763,"about_ca_topic_score_gemma":0.0009404675,"domain_scores_codex":[0.9994023,0.00008473924,0.00003785139,0.0001741883,0.0002284508,0.00007237798],"domain_scores_gemma":[0.999773,0.00004423022,0.00006341031,0.0000239343,0.00006242329,0.00003299108],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001829176,0.00007527084,0.000616884,0.007204168,0.000105962,0.0009367139,0.0002913095,0.001815169,0.3484838,0.04999277,0.01505704,0.575238],"study_design_scores_gemma":[0.00003683926,0.0001688806,0.00281695,0.0008224941,0.00004236474,0.002753095,0.000135856,0.0006850716,0.1140187,0.0147662,0.8636945,0.00005896291],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004291904,0.9736703,0.007744433,0.0007453199,0.0008450632,0.00005206057,0.0001174442,0.0002103607,0.01232302],"genre_scores_gemma":[0.05611863,0.9260914,0.00647731,0.0005755237,0.0006587597,0.0001142373,0.0002253865,0.00003477078,0.009703923],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001922757,"threshold_uncertainty_score":0.01003867,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2624817404","doi":"10.1038/nature22798","title":"BAP1 regulates IP3R3-mediated Ca2+ flux to mitochondria suppressing cell transformation","year":2017,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":398,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"National Cancer Institute","keywords":"BAP1; Cancer research; Endoplasmic reticulum; Carcinogenesis; Mitochondrion; Biology; DNA damage; DNA repair; Cell biology; Programmed cell death; Apoptosis; Genetics; Gene; DNA; Melanoma","authors":[{"name":"Angela Bononi","is_ca":false},{"name":"Carlotta Giorgi","is_ca":false},{"name":"Simone Patergnani","is_ca":false},{"name":"David Larson","is_ca":false},{"name":"Kaitlyn Verbruggen","is_ca":false},{"name":"Mika Tanji","is_ca":false},{"name":"Laura Pellegrini","is_ca":false},{"name":"Valentina Signorato","is_ca":false},{"name":"Federica Olivetto","is_ca":false},{"name":"Sandra Pastorino","is_ca":false},{"name":"Masaki Nasu","is_ca":false},{"name":"Andrea Napolitano","is_ca":false},{"name":"Giovanni Gaudino","is_ca":false},{"name":"Paul Morris","is_ca":false},{"name":"G Sakamoto","is_ca":false},{"name":"Laura K. Ferris","is_ca":false},{"name":"Alberto Danese","is_ca":false},{"name":"Andrea Raimondi","is_ca":false},{"name":"Carlo Tacchetti","is_ca":false},{"name":"Shafi Kuchay","is_ca":false},{"name":"Harvey I. Pass","is_ca":false},{"name":"El Bachir Affar","is_ca":true},{"name":"Haining Yang","is_ca":false},{"name":"Paolo Pinton","is_ca":false},{"name":"Michele Carbone","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005064133165088835,"gpt":0.2452241806571103,"spread":0.2401600474920215,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002457155,0.0004233406,0.0003746825,0.0004778718,0.0005692947,0.0009103653,0.0006457191,0.0006714765,0.00284046],"category_scores_gemma":[0.0003043964,0.0003002002,0.0004273368,0.0002976592,0.0005030003,0.0005487004,0.000601362,0.001573034,0.001166488],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009266744,"about_ca_system_score_gemma":0.0003205607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009374223,"about_ca_topic_score_gemma":0.000998294,"domain_scores_codex":[0.9996643,0.00004797392,0.00002511989,0.00007730376,0.00008522071,0.0001001018],"domain_scores_gemma":[0.999653,0.0000718037,0.00007968194,0.00006958524,0.000050275,0.00007559705],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000948194,0.00001391088,0.00004121774,0.00001365034,0.000001897936,0.00003680794,0.000009718796,0.00002331716,0.9991267,0.0001879543,0.00004467433,0.0004052605],"study_design_scores_gemma":[0.00001064514,0.00002873411,0.0009666355,0.00000243489,0.000005851539,0.0000935394,0.00001997928,0.0005053248,0.9966806,0.00008354431,0.001599486,0.000003176791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9751592,0.0021527,0.0124675,0.001043962,0.0001538216,0.00007069921,0.0009051679,0.001134859,0.006912157],"genre_scores_gemma":[0.9928149,0.0003521382,0.001527564,0.00008540131,0.0000194381,0.00003297507,0.0003896941,0.0001535591,0.004624333],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00284046,"threshold_uncertainty_score":0.009502292,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2161560609","doi":"10.1139/o07-069","title":"Mre11–Rad50–Nbs1 is a keystone complex connecting DNA repair machinery, double-strand break signaling, and the chromatin templateThis paper is one of a selection of papers published in this Special Issue, entitled 28th International West Coast Chromatin and Chromosome Conference, and has undergone the Journal's usual peer review process.","year":2007,"lang":"en","type":"review","venue":"Biochemistry and Cell Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":393,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"National Cancer Institute","keywords":"Rad50; Nijmegen breakage syndrome; Biology; Chromatin; DNA repair; Cell biology; DNA damage; DNA; G2-M DNA damage checkpoint; Genetics; DNA-binding protein; Cell cycle checkpoint; Ataxia-telangiectasia; Cell cycle; Cancer; Transcription factor","authors":[{"name":"R. Scott Williams","is_ca":false},{"name":"Jessica S. Williams","is_ca":false},{"name":"John A. Tainer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03441432956791329,"gpt":0.3014059242214445,"spread":0.2669915946535312,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000801514,0.0007189388,0.0006700726,0.001189681,0.000984556,0.003088523,0.0005472463,0.0008644776,0.03173434],"category_scores_gemma":[0.0008800338,0.0004334292,0.0003543265,0.0009946058,0.000682419,0.001795927,0.001423184,0.0006815305,0.02464234],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008035352,"about_ca_system_score_gemma":0.001658063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000516657,"about_ca_topic_score_gemma":0.0007422384,"domain_scores_codex":[0.9993495,0.00006437471,0.00004357136,0.0001734855,0.0002932694,0.00007567125],"domain_scores_gemma":[0.9994235,0.00003647421,0.0001359956,0.00004423969,0.0001920274,0.0001678206],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005483953,0.0001131309,0.004264491,0.00258324,0.000134761,0.0010771,0.0002501814,0.0005879814,0.4569603,0.01070963,0.1075316,0.4152391],"study_design_scores_gemma":[0.00001353848,0.00009977568,0.005417555,0.0001040227,0.00002386698,0.0007365763,0.0001511235,0.000291874,0.07395221,0.0008826823,0.9182972,0.00002960427],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.196407,0.4278237,0.06366618,0.01899481,0.05494146,0.001306925,0.009131728,0.006698631,0.2210295],"genre_scores_gemma":[0.3816307,0.1440349,0.02674175,0.00174559,0.007227882,0.0002275408,0.01425333,0.001031715,0.4231065],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.03173434,"threshold_uncertainty_score":0.106162,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2130884140","doi":"10.1242/jcs.115.8.1611","title":"The time course and chromosomal localization of recombination-related proteins at meiosis in the mouse are compatible with models that can resolve the early DNA-DNA interactions without reciprocal recombination","year":2002,"lang":"en","type":"article","venue":"Journal of Cell Science","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":388,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"York University","funders":"","keywords":"Biology; RAD51; Synapsis; Synaptonemal complex; Homologous recombination; Genetics; Replication protein A; Genetic recombination; Ectopic recombination; DNA; Chromosomal crossover; Recombinant DNA; FLP-FRT recombination; DNA repair; Meiosis; Recombination; DNA-binding protein; Gene","authors":[{"name":"Peter B. Møens","is_ca":true},{"name":"Nadine K. Kolas","is_ca":true},{"name":"Madalena Tarsounas","is_ca":false},{"name":"Edyta Marcon","is_ca":true},{"name":"Paula E. Cohen","is_ca":false},{"name":"Barbara Spyropoulos","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01281878816342108,"gpt":0.2235264868791352,"spread":0.2107076987157141,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001871157,0.0003063231,0.0001128629,0.0007901058,0.0002146674,0.0003598426,0.0002359463,0.0003936996,0.002563794],"category_scores_gemma":[0.0001630603,0.0002462913,0.000234168,0.000190025,0.0002766243,0.0003865735,0.0002688701,0.0005971296,0.0009410174],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003484836,"about_ca_system_score_gemma":0.0001626159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003851398,"about_ca_topic_score_gemma":0.0008044936,"domain_scores_codex":[0.9998809,0.00001647025,0.000009899933,0.00004180667,0.00003311036,0.00001773269],"domain_scores_gemma":[0.9998061,0.00002546546,0.00006609315,0.00003170864,0.00001823279,0.00005232544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000126434,0.00002312904,0.0009381158,0.00003776675,0.000003725159,0.00008940783,0.00003047378,0.00004753036,0.9947018,0.0009274446,0.00004138541,0.003032873],"study_design_scores_gemma":[0.00003175801,0.0005169094,0.02431523,0.00003697813,0.00002879105,0.001195579,0.00005292192,0.0005499156,0.960633,0.000899701,0.01172682,0.00001238635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9648545,0.005859657,0.02043754,0.0001874458,0.00004778079,0.00005743392,0.001178397,0.0004526968,0.006924511],"genre_scores_gemma":[0.972059,0.002379467,0.01086413,0.00008564255,0.00001606459,0.000132497,0.001537391,0.0001016262,0.01282403],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002563794,"threshold_uncertainty_score":0.008576751,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2766300480","doi":"10.1016/j.radonc.2017.09.043","title":"ATR/CHK1 inhibitors and cancer therapy","year":2017,"lang":"en","type":"review","venue":"Radiotherapy and Oncology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":388,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Cancer Institute; School of Medicine, Case Western Reserve University; School of Medicine; Western University; Case Comprehensive Cancer Center, Case Western Reserve University; Comprehensive Cancer Center, City of Hope","keywords":"CHEK1; DNA damage; Synthetic lethality; Cancer research; DNA repair; Ataxia-telangiectasia; Cancer cell; G2-M DNA damage checkpoint; Mitosis; Cell cycle checkpoint; Cell cycle; Cancer; Biology; Kinase; DNA; Cell biology; Genetics","authors":[{"name":"Zhaojun Qiu","is_ca":false},{"name":"Nancy L. Oleinick","is_ca":false},{"name":"Junran Zhang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04608454608422507,"gpt":0.3793831738759061,"spread":0.3332986277916811,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006433124,0.001023368,0.001503485,0.001414365,0.0002517178,0.001023523,0.00119315,0.001100574,0.003906543],"category_scores_gemma":[0.0007138899,0.0003162499,0.0004427985,0.001470797,0.000551581,0.001106799,0.0007090474,0.002784079,0.002120036],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007129703,"about_ca_system_score_gemma":0.0008597149,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000700814,"about_ca_topic_score_gemma":0.002156731,"domain_scores_codex":[0.9998351,0.00002588254,0.0000208449,0.00002991087,0.00006483257,0.00002338011],"domain_scores_gemma":[0.99978,0.0001037564,0.00003303795,0.000008471723,0.00005052924,0.00002425099],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001378364,0.00009364196,0.0001156479,0.009278541,0.00008426591,0.0001624616,0.00002635666,0.0006298749,0.00201976,0.003628191,0.05860096,0.9252225],"study_design_scores_gemma":[0.00004258264,0.00007081641,0.0003231277,0.001550374,0.0001157384,0.0005640506,0.00002403761,0.0001168174,0.0006204469,0.001868628,0.9946891,0.00001417666],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001036683,0.9978416,0.0001528204,0.0003724956,0.0003300062,0.000005781574,0.00002672669,0.00001237051,0.00115454],"genre_scores_gemma":[0.0008368546,0.9973362,0.0001807069,0.0003636738,0.0002515714,0.00000885164,0.00005893431,0.00000276728,0.000960493],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003906543,"threshold_uncertainty_score":0.01306868,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2067135122","doi":"10.1038/ng931","title":"Meiotic arrest and aneuploidy in MLH3-deficient mice","year":2002,"lang":"en","type":"article","venue":"Nature Genetics","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":384,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"York University","funders":"","keywords":"Biology; Meiosis; Homologous chromosome; Genetics; Homologous recombination; Cell biology; DNA; Gene","authors":[{"name":"Steven M. Lipkin","is_ca":false},{"name":"Peter B. Møens","is_ca":true},{"name":"Victoria Wang","is_ca":false},{"name":"Michelle L. Lenzi","is_ca":false},{"name":"Dakshine Shanmugarajah","is_ca":false},{"name":"Abigail Gilgeous","is_ca":false},{"name":"James W. Thomas","is_ca":false},{"name":"Jun Cheng","is_ca":false},{"name":"Jeffrey W. Touchman","is_ca":false},{"name":"Eric D. Green","is_ca":false},{"name":"Pam Schwartzberg","is_ca":false},{"name":"Francis S. Collins","is_ca":false},{"name":"Paula E. Cohen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006431706652702413,"gpt":0.2234036518121257,"spread":0.2169719451594233,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004025768,0.001408181,0.0008743518,0.003923595,0.0006549862,0.0009126329,0.0009968859,0.0019692,0.006349704],"category_scores_gemma":[0.0005242671,0.0009268934,0.0006956895,0.0007781301,0.00136227,0.0006716192,0.0008513883,0.002505643,0.001230056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006857527,"about_ca_system_score_gemma":0.0004464696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001125413,"about_ca_topic_score_gemma":0.001262875,"domain_scores_codex":[0.9994103,0.00007284633,0.0000834911,0.0001581961,0.000160063,0.0001151984],"domain_scores_gemma":[0.9983563,0.0002651494,0.0007063709,0.0001392522,0.00006570209,0.0004672978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007487658,0.00008379347,0.0005238124,0.00005438197,0.00002452106,0.001027496,0.00004216411,0.0001830907,0.9950942,0.000792984,0.0001812112,0.00124355],"study_design_scores_gemma":[0.0004887113,0.0005981703,0.01435546,0.00006571905,0.000144449,0.008615111,0.0001247477,0.001777379,0.9664648,0.001231082,0.006079028,0.00005529146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821634,0.002579281,0.005257963,0.0007415747,0.0001296599,0.0001046047,0.003680008,0.0009772314,0.004366433],"genre_scores_gemma":[0.9825237,0.001749871,0.002792291,0.0002482748,0.0001031378,0.0001389725,0.00130374,0.0004769723,0.01066292],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006349704,"threshold_uncertainty_score":0.0212419,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045069136","doi":"10.1038/nsmb1313","title":"The structure-specific endonuclease Mus81 contributes to replication restart by generating double-strand DNA breaks","year":2007,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":381,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"KWF Kankerbestrijding; Cancer Research UK; Cancer Research Society","keywords":"Biology; DNA replication; Control of chromosome duplication; Eukaryotic DNA replication; Origin recognition complex; Replication protein A; Pre-replication complex; Endonuclease; DNA; Replication factor C; Cell biology; Genome instability; DNA repair; Genetics; Molecular biology; DNA damage; DNA-binding protein; Gene","authors":[{"name":"Katsuhiro Hanada","is_ca":false},{"name":"Magda Budzowska","is_ca":false},{"name":"Sally L. Davies","is_ca":false},{"name":"Ellen van Drunen","is_ca":false},{"name":"Hideo Onizawa","is_ca":false},{"name":"H. Berna Beverloo","is_ca":false},{"name":"Alex Maas","is_ca":false},{"name":"Jeroen Essers","is_ca":false},{"name":"Ian D. Hickson","is_ca":false},{"name":"Roland Kanaar","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004163809753751494,"gpt":0.2761283027341055,"spread":0.271964492980354,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005304703,0.0008420332,0.0004707825,0.0003965527,0.0005200583,0.0009406073,0.000517235,0.001082424,0.001977797],"category_scores_gemma":[0.0008502108,0.0005733179,0.0004166478,0.0002303615,0.0003961513,0.0007951038,0.000735631,0.001036228,0.001484541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004395912,"about_ca_system_score_gemma":0.0002211693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002023823,"about_ca_topic_score_gemma":0.0003319317,"domain_scores_codex":[0.9996369,0.00003971974,0.00002811388,0.0001142941,0.0001116335,0.00006933188],"domain_scores_gemma":[0.9994992,0.00009724038,0.0001076148,0.0001533676,0.00007758012,0.0000649702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009022313,0.00002055495,0.0006028092,0.00005585944,0.00001317128,0.00009530652,0.00002125858,0.0003005818,0.9924367,0.0008114307,0.0001604166,0.005391684],"study_design_scores_gemma":[0.00000919029,0.00009265997,0.002308799,0.000004454407,0.00001751995,0.0003742736,0.00001974979,0.001440512,0.9923992,0.0003448055,0.002982652,0.000006180705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9640498,0.006691372,0.0216031,0.0003310561,0.0002381354,0.00004435277,0.0002072748,0.0007788918,0.00605597],"genre_scores_gemma":[0.9912456,0.0008086445,0.003911391,0.00005941857,0.00002853208,0.00001113541,0.0002927802,0.00009072527,0.003551803],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001977797,"threshold_uncertainty_score":0.006616414,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2010624323","doi":"10.1056/nejmoa1214271","title":"ERCC1 Isoform Expression and DNA Repair in Non–Small-Cell Lung Cancer","year":2013,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":363,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Ontario Institute for Cancer Research; Princess Margaret Cancer Centre; University Health Network","funders":"National Cancer Institute","keywords":"ERCC1; Medicine; Cisplatin; Lung cancer; DNA repair; Biomarker; Oncology; Chemotherapy; Nucleotide excision repair; Cancer research; Internal medicine; DNA; Biology; Genetics","authors":[{"name":"Luc Friboulet","is_ca":false},{"name":"Ken A. Olaussen","is_ca":false},{"name":"Jean‐Pierre Pignon","is_ca":false},{"name":"Frances A. Shepherd","is_ca":true},{"name":"Ming‐Sound Tsao","is_ca":true},{"name":"Stephen L. Graziano","is_ca":false},{"name":"Robert A. Kratzke","is_ca":false},{"name":"Jean-Yves Douillard","is_ca":false},{"name":"Lesley Seymour","is_ca":true},{"name":"Robert Pirker","is_ca":false},{"name":"Martin Filipits","is_ca":false},{"name":"Fabrice André","is_ca":false},{"name":"Éric Solary","is_ca":false},{"name":"Florence Ponsonnailles","is_ca":false},{"name":"Angélique Robin","is_ca":false},{"name":"Annabelle Stoclin","is_ca":false},{"name":"Nicolas Dorvault","is_ca":false},{"name":"Frédéric Commo","is_ca":false},{"name":"Julien Adam","is_ca":false},{"name":"Elsa Vanhecke","is_ca":false},{"name":"Patrick Saulnier","is_ca":false},{"name":"Jürgen Thomale","is_ca":false},{"name":"Thierry Le Chevalier","is_ca":false},{"name":"Ariane Dunant","is_ca":false},{"name":"Vanessa Rousseau","is_ca":false},{"name":"Gwénaël Le Teuff","is_ca":false},{"name":"Élisabeth Brambilla","is_ca":false},{"name":"Jean‐Charles Soria","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006561960301400329,"gpt":0.243644781292809,"spread":0.2370828209914086,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008300609,0.0001681915,0.0002309584,0.0006139097,0.0002021065,0.0002488004,0.0002405291,0.0003938201,0.0009418381],"category_scores_gemma":[0.001099193,0.0001085955,0.0001546103,0.0004949193,0.0002539214,0.0002231526,0.0001129565,0.0003376001,0.0001893414],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004522829,"about_ca_system_score_gemma":0.0001774175,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001366682,"about_ca_topic_score_gemma":0.001899705,"domain_scores_codex":[0.9997742,0.00006830146,0.00002056158,0.00005757756,0.00005258033,0.0000268174],"domain_scores_gemma":[0.9992132,0.0002099627,0.0003064726,0.00004775212,0.0001329741,0.00008961928],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00334721,0.0001330022,0.9313099,0.0001101083,0.000104337,0.0002938731,0.00008346136,0.0004045726,0.05245373,0.00004635023,0.0002693192,0.01144413],"study_design_scores_gemma":[0.00003858016,0.0003784451,0.9923901,0.000004889178,0.00003912908,0.0007172653,0.00002981153,0.0003743657,0.005467248,0.00004572402,0.0005116722,0.000002746923],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979589,0.00144428,0.0001138344,0.00004269737,0.000004958934,0.00001365201,0.00009726531,0.000003924741,0.000320482],"genre_scores_gemma":[0.9990097,0.0002891328,0.0001820936,0.00002093782,0.00000788637,0.00001453849,0.0002643208,0.00000236304,0.0002088327],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001366682,"threshold_uncertainty_score":0.004389822,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2002231685","doi":"10.1016/j.biochi.2003.10.011","title":"Repair of DNA double strand breaks by non-homologous end joining","year":2003,"lang":"en","type":"review","venue":"Biochimie","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":363,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"DNA repair protein XRCC4; Non-homologous end joining; DNA ligase; DNA repair; Homologous recombination; Genome instability; DNA; Biology; Ku80; Replication protein A; Molecular biology; DNA damage; Cell biology; Homology directed repair; Genetics; Chemistry; Nucleotide excision repair; DNA-binding protein; Gene","authors":[{"name":"Susan P. Lees‐Miller","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02163200815247025,"gpt":0.2888090950783256,"spread":0.2671770869258554,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000769734,0.001485303,0.002508519,0.001680719,0.0004898434,0.001330297,0.002214249,0.001494496,0.002534091],"category_scores_gemma":[0.0005284098,0.000470674,0.0004046221,0.002343026,0.0008569697,0.001735599,0.0005964448,0.001837545,0.004887824],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009541316,"about_ca_system_score_gemma":0.001011159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009591618,"about_ca_topic_score_gemma":0.001637646,"domain_scores_codex":[0.999768,0.00002436313,0.00002794973,0.00004959651,0.0001041799,0.00002593704],"domain_scores_gemma":[0.9997589,0.00007209073,0.0000422314,0.00001324853,0.00008675871,0.0000267711],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001967337,0.00008900781,0.0001379223,0.01262617,0.00008190054,0.0003890043,0.00006420659,0.0004647718,0.01785188,0.004503505,0.0249809,0.938614],"study_design_scores_gemma":[0.00002477808,0.00006778077,0.0004035607,0.0007163344,0.00007008865,0.001329119,0.00004615001,0.00006798028,0.006335505,0.001907136,0.9890141,0.0000174933],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000175296,0.9974418,0.0007724497,0.0001435941,0.0004235665,0.00000629317,0.00001469942,0.0000163873,0.001005935],"genre_scores_gemma":[0.0009570154,0.9963353,0.0006515874,0.000103974,0.0002067005,0.000008079205,0.00004952484,0.000002789195,0.001685078],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002534091,"threshold_uncertainty_score":0.00847739,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2032640722","doi":"10.1016/j.cell.2008.08.016","title":"RTEL1 Maintains Genomic Stability by Suppressing Homologous Recombination","year":2008,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":361,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute on Aging; Cancer Research UK","keywords":"Biology; Homologous recombination; Genome instability; Helicase; DNA repair; Genetics; DNA damage; Genome; Cell biology; Mutant; DNA; Gene; RNA","authors":[{"name":"Louise J. Barber","is_ca":false},{"name":"Jillian L. Youds","is_ca":true},{"name":"Jordan D. Ward","is_ca":false},{"name":"Michael J. McIlwraith","is_ca":false},{"name":"Nigel J. O’Neil","is_ca":true},{"name":"Mark I.R. Petalcorin","is_ca":false},{"name":"Julie S. Martin","is_ca":false},{"name":"Spencer J. Collis","is_ca":false},{"name":"Sharon B. Cantor","is_ca":false},{"name":"Melissa M. Auclair","is_ca":false},{"name":"Heidi A. Tissenbaum","is_ca":false},{"name":"Stephen C. West","is_ca":false},{"name":"Ann M. Rose","is_ca":true},{"name":"Simon J. Boulton","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01088935825189843,"gpt":0.2094972542144931,"spread":0.1986078959625947,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004136705,0.0005312022,0.000417571,0.0007829499,0.0004031196,0.00114252,0.0009853382,0.0006588519,0.002784384],"category_scores_gemma":[0.0004203195,0.0003018378,0.0003469083,0.0003087622,0.0004702492,0.0005235523,0.0005555488,0.001096235,0.001827796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007035921,"about_ca_system_score_gemma":0.000252649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000333382,"about_ca_topic_score_gemma":0.0005195235,"domain_scores_codex":[0.9996831,0.00003778177,0.00002620578,0.0001001267,0.00007941661,0.00007336611],"domain_scores_gemma":[0.999383,0.0001446823,0.0001747912,0.0001227724,0.00006319791,0.0001116514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006725561,0.00001485626,0.0001099515,0.00001927305,0.000004405037,0.00003945256,0.000009348571,0.00005122265,0.9977823,0.0002865057,0.00005595737,0.001559556],"study_design_scores_gemma":[0.000006537132,0.00002736422,0.0005371986,0.000002094872,0.000006750332,0.0001618795,0.000008699762,0.0004168817,0.9964826,0.0000511451,0.002294857,0.000003991011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9766226,0.003803044,0.01284805,0.0003619515,0.00009476542,0.00002588581,0.0007194267,0.001104954,0.004419241],"genre_scores_gemma":[0.9889625,0.0005598329,0.003237638,0.0000795974,0.00002950547,0.00001926715,0.0008921963,0.0002690823,0.005950395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002784384,"threshold_uncertainty_score":0.009314656,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2107816126","doi":"10.1038/emboj.2012.47","title":"RNF8‐ and RNF168‐dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites","year":2012,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":346,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; McGill University; Jewish General Hospital","funders":"National Cancer Institute; Canadian Institutes of Health Research; Terry Fox Foundation","keywords":"Histone; Ubiquitin; DNA damage; Biology; Histone H2A; Cell biology; Histone H4; Ectopic expression; Molecular biology; DNA repair; DNA methylation; DNA; Biochemistry; Genetics; Cell culture; Gene expression; Gene","authors":[{"name":"Frédérick A. Mallette","is_ca":true},{"name":"Francesca Mattiroli","is_ca":false},{"name":"Gaofeng Cui","is_ca":false},{"name":"Leah C. Young","is_ca":true},{"name":"Michael J. Hendzel","is_ca":true},{"name":"Georges Mer","is_ca":false},{"name":"Titia K. Sixma","is_ca":false},{"name":"Stéphane Richard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03982236307221149,"gpt":0.2923704593241508,"spread":0.2525480962519394,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002074437,0.0004034492,0.0003798547,0.0002728714,0.0003827426,0.0005412324,0.0003536599,0.0004250657,0.003897946],"category_scores_gemma":[0.0002872364,0.0003141425,0.000411085,0.0001137545,0.000328505,0.0003706561,0.0004424913,0.0007598777,0.001709987],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009895005,"about_ca_system_score_gemma":0.0003359541,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001431059,"about_ca_topic_score_gemma":0.002802351,"domain_scores_codex":[0.9997416,0.0000164552,0.00001948618,0.00008742106,0.00005669603,0.00007822351],"domain_scores_gemma":[0.9997992,0.00001532084,0.000060665,0.00003040619,0.00002611658,0.00006830981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003280177,0.0000169498,0.0004190975,0.00006573186,0.00001379816,0.0001589688,0.00001124531,0.00007118705,0.996757,0.00013997,0.0003865288,0.001631482],"study_design_scores_gemma":[0.00002199547,0.00004911845,0.01128404,0.000007655573,0.000009692744,0.0004961337,0.00003440885,0.001013948,0.9829189,0.0001097041,0.004044458,0.000009873751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839642,0.004465142,0.005160429,0.0004660556,0.0002523261,0.00003554496,0.001295943,0.0004565176,0.003903799],"genre_scores_gemma":[0.9912574,0.0003909134,0.002001426,0.00007717519,0.00001779736,0.00002111463,0.001051165,0.00007612869,0.0051068],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003897946,"threshold_uncertainty_score":0.01303989,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2568928300","doi":"10.1016/j.freeradbiomed.2016.12.049","title":"Formation and repair of oxidatively generated damage in cellular DNA","year":2017,"lang":"en","type":"review","venue":"Free Radical Biology and Medicine","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":342,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Environmental Health Sciences; National Institute on Aging; Pro-Reitoria de Pesquisa, Universidade de São Paulo; Natural Sciences and Engineering Research Council of Canada; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"DNA damage; Cell biology; Chemistry; DNA repair; Biophysics; DNA; Biology; Biochemistry","authors":[{"name":"Jean Cadet","is_ca":true},{"name":"Kelvin J.A. Davies","is_ca":false},{"name":"Marisa Helena Gennari de Medeiros","is_ca":false},{"name":"Paolo Di Mascio","is_ca":false},{"name":"J. Richard Wagner","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04575628147427383,"gpt":0.3403834120275738,"spread":0.2946271305532999,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005964854,0.0009449701,0.001244116,0.00156403,0.0003317654,0.001188006,0.001273539,0.001325461,0.002040932],"category_scores_gemma":[0.0005433161,0.0002927735,0.0003663283,0.001768321,0.000776579,0.001665023,0.0008892044,0.001697263,0.001277176],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000650801,"about_ca_system_score_gemma":0.001136698,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007108766,"about_ca_topic_score_gemma":0.001170826,"domain_scores_codex":[0.9998109,0.00002917167,0.00002129516,0.00003652239,0.00007653768,0.0000256199],"domain_scores_gemma":[0.9998004,0.00008054171,0.00004050853,0.00000907703,0.00005043109,0.00001904324],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006903682,0.00006044115,0.0001606076,0.01899594,0.00007232195,0.0002629079,0.00008586267,0.0004783024,0.005717435,0.007887931,0.02100957,0.9451996],"study_design_scores_gemma":[0.00001072713,0.0000701277,0.0004410772,0.002218063,0.00008260841,0.001211494,0.0000740312,0.00009735311,0.002543657,0.005236113,0.9879912,0.00002353563],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001190227,0.9984716,0.0002900174,0.0001899424,0.0001663006,0.000004513674,0.00001114697,0.000005758334,0.0007417692],"genre_scores_gemma":[0.0007761817,0.9981828,0.0002274406,0.00009947491,0.0001510404,0.000005622689,0.00001818269,0.00000103499,0.0005382042],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002040932,"threshold_uncertainty_score":0.006827593,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2122706742","doi":"10.1038/nature06055","title":"Tip60 is a haplo-insufficient tumour suppressor required for an oncogene-induced DNA damage response","year":2007,"lang":"en","type":"article","venue":"Nature","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":341,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; CancerCare Manitoba","funders":"","keywords":"Carcinogenesis; Cancer research; Biology; Oncogene; Loss of heterozygosity; DNA damage; Suppressor; Tumor suppressor gene; Apoptosis; Allele; Gene; Molecular biology; DNA; Genetics; Cell cycle","authors":[{"name":"Chiara Gorrini","is_ca":false},{"name":"Massimo Squatrito","is_ca":false},{"name":"Chiara Luise","is_ca":false},{"name":"Nelofer Syed","is_ca":false},{"name":"Daniele Perna","is_ca":false},{"name":"Landon Wark","is_ca":true},{"name":"Francesca Martinato","is_ca":false},{"name":"Domenico Sardella","is_ca":false},{"name":"Alessandro Verrecchia","is_ca":false},{"name":"Samantha Bennett","is_ca":false},{"name":"Stefano Confalonieri","is_ca":false},{"name":"Matteo Cesaroni","is_ca":false},{"name":"Francesco Marchesi","is_ca":false},{"name":"Milena Gasco","is_ca":false},{"name":"Eugenio Scanziani","is_ca":false},{"name":"Maria Capra","is_ca":false},{"name":"Sabine Mai","is_ca":true},{"name":"Paolo Nucíforo","is_ca":false},{"name":"Tim Crook","is_ca":false},{"name":"John Lough","is_ca":false},{"name":"Bruno Amati","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01677293714690205,"gpt":0.3066134307065674,"spread":0.2898404935596653,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002502297,0.0008620232,0.0007203337,0.0007315397,0.0003905618,0.0007535021,0.0007284266,0.001012405,0.003872601],"category_scores_gemma":[0.000489504,0.0005165357,0.0004425487,0.0004509382,0.0007684745,0.0003928149,0.0007837412,0.001539151,0.00222647],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000440189,"about_ca_system_score_gemma":0.0002541891,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003923063,"about_ca_topic_score_gemma":0.0004096965,"domain_scores_codex":[0.9996044,0.00004318475,0.00007279346,0.00007653173,0.0001357082,0.0000673607],"domain_scores_gemma":[0.9989311,0.0002457685,0.0002496424,0.0001507154,0.00005594961,0.0003667889],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000708633,0.0000145095,0.0001133113,0.00002221266,0.000005924586,0.0003077334,0.000005022275,0.00006293193,0.9987518,0.0001112267,0.00007822577,0.0004561951],"study_design_scores_gemma":[0.00004444847,0.00008980421,0.004482567,0.00001014268,0.00002917499,0.002947199,0.00004710134,0.001858976,0.9876968,0.0003104731,0.002466424,0.00001672316],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9876751,0.001772234,0.00548893,0.0003922057,0.0002472218,0.0000313231,0.001681479,0.000536849,0.00217468],"genre_scores_gemma":[0.9954595,0.000340905,0.001250825,0.00009143093,0.00002841218,0.00002004315,0.001049912,0.0001879226,0.001571011],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003872601,"threshold_uncertainty_score":0.01295513,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064256444","doi":"10.1016/j.cell.2006.06.039","title":"A Role for the Deubiquitinating Enzyme USP28 in Control of the DNA-Damage Response","year":2006,"lang":"en","type":"article","venue":"Cell","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":337,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; Terry Fox Foundation; Howard Hughes Medical Institute; U.S. Department of Defense","keywords":"Biology; Deubiquitinating enzyme; DNA damage; Enzyme; Genetics; DNA; DNA repair; Ubiquitin; Cell biology; Gene; Biochemistry","authors":[{"name":"Dong Zhang","is_ca":false},{"name":"Kathrin Zaugg","is_ca":true},{"name":"Tak W. Mak","is_ca":true},{"name":"Stephen J. Elledge","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004435224430211064,"gpt":0.2102145849158132,"spread":0.2057793604856021,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003168586,0.0003489349,0.0005012567,0.0002918441,0.0003466721,0.00105428,0.0004713253,0.0005240249,0.001781993],"category_scores_gemma":[0.0004036125,0.0001942045,0.0002186155,0.0001406933,0.0006400918,0.0006131182,0.0006124449,0.0007276606,0.0006597108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004517247,"about_ca_system_score_gemma":0.0002213815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002107864,"about_ca_topic_score_gemma":0.0003004854,"domain_scores_codex":[0.999844,0.00001973603,0.00001121892,0.00004988624,0.00004402563,0.00003119414],"domain_scores_gemma":[0.9997035,0.00006101984,0.00004818682,0.00005779419,0.00004058372,0.00008889425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003581982,0.00003052123,0.0006450683,0.00005773839,0.000008498944,0.0004000197,0.00003722428,0.0003664824,0.9871006,0.002888374,0.0003621588,0.007745093],"study_design_scores_gemma":[0.00006083226,0.0001920507,0.008145059,0.0000168425,0.0000187394,0.001161569,0.0001240698,0.007579999,0.9631707,0.005041101,0.01446473,0.00002423472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9589508,0.01942279,0.01251636,0.001451161,0.0002259699,0.00001941092,0.0002795181,0.0003120725,0.006821949],"genre_scores_gemma":[0.9907454,0.002632947,0.002348508,0.0001026711,0.00004528213,0.0000074009,0.0001765177,0.00003231606,0.003908958],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001781993,"threshold_uncertainty_score":0.005961359,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113467627","doi":"10.1158/0008-5472.can-05-2119","title":"Hypoxia-Induced Down-regulation of <i>BRCA1</i> Expression by E2Fs","year":2005,"lang":"en","type":"article","venue":"Cancer Research","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":336,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; University Health Network","funders":"National Institute of Environmental Health Sciences; National Cancer Institute; National Institutes of Health; National Institute of General Medical Sciences; U.S. Department of Defense","keywords":"Homologous recombination; Psychological repression; Biology; DNA repair; Genome instability; E2F; Genetics; Non-homologous end joining; Hypoxia (environmental); Gene; Cancer research; Gene expression; Cell biology; DNA; DNA damage; Chemistry","authors":[{"name":"Ranjit S. Bindra","is_ca":false},{"name":"Shannon L. Gibson","is_ca":false},{"name":"Alice Meng","is_ca":true},{"name":"Ulrica Westermark","is_ca":false},{"name":"Maria Jasin","is_ca":false},{"name":"Andrew Pierce","is_ca":false},{"name":"Robert G. Bristow","is_ca":true},{"name":"Marie K. Classon","is_ca":false},{"name":"Peter M. Glazer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03689567987208659,"gpt":0.3549857437864828,"spread":0.3180900639143963,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006616814,0.0001590635,0.00012523,0.00006607734,0.00009401124,0.0001771937,0.00009655407,0.00008766945,0.0009719104],"category_scores_gemma":[0.0001014966,0.00008078248,0.0001201271,0.00004855189,0.0001367416,0.00009808303,0.0001138934,0.0001738041,0.0001809225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000207587,"about_ca_system_score_gemma":0.0001004527,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007444084,"about_ca_topic_score_gemma":0.0007526952,"domain_scores_codex":[0.9999398,0.00001107596,0.000005121822,0.00001105037,0.00001322737,0.00001973436],"domain_scores_gemma":[0.9999369,0.00001456762,0.00001852794,0.000009019484,0.000006383719,0.00001455572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006209732,0.000008060293,0.00013851,0.00001147976,0.000001782709,0.00002528214,0.000005348084,0.00003017335,0.9989524,0.00006303768,0.00003117192,0.0006706772],"study_design_scores_gemma":[0.000006599048,0.0000824383,0.006035015,0.000002070197,0.000003388141,0.000162219,0.000009465898,0.0004333664,0.991188,0.00003591351,0.002039715,0.00000163661],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939216,0.001630846,0.0022915,0.0001189633,0.00002766065,0.0000115597,0.0002810355,0.00005591597,0.001660945],"genre_scores_gemma":[0.9950647,0.0007278301,0.001263525,0.00004745989,0.000009843587,0.00001567457,0.0004100696,0.00001644651,0.002444423],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009719104,"threshold_uncertainty_score":0.003251374,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981587077","doi":"10.1016/j.semcancer.2015.03.005","title":"Genomic instability in human cancer: Molecular insights and opportunities for therapeutic attack and prevention through diet and nutrition","year":2015,"lang":"en","type":"review","venue":"Seminars in Cancer Biology","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":333,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"National Institute of Dental and Craniofacial Research; National Cancer Institute; National Center for Complementary and Integrative Health; National Institute on Aging; Canadian Institutes of Health Research; Università degli Studi di Firenze; National Institutes of Health; Terry Fox Foundation; United Arab Emirates University; Ministry of Education, Culture, Sports, Science and Technology; Universitetet i Oslo; Ministero dell’Istruzione, dell’Università e della Ricerca; Breast Cancer Research Trust; Avon Foundation for Women; Cancer Research UK; University of Rochester; Center for Hierarchical Manufacturing, National Science Foundation; Child and Family Research Institute; U.S. Public Health Service; U.S. Department of Defense; Associazione Italiana per la Ricerca sul Cancro; Eli Lilly and Company; Bristol-Myers Squibb; National Institute of Diabetes and Digestive and Kidney Diseases; Department of Biology, Indiana State University; Verein fur Krebsforschung; Uniting Against Lung Cancer; Elsa U. Pardee Foundation; University of Glasgow; Susan G. Komen for the Cure","keywords":"Genome instability; Biology; DNA damage; Chromosome instability; Cancer; DNA repair; Epigenetics; Telomere; Microsatellite instability; Centrosome; Cancer research; Genetics; Computational biology; Bioinformatics; DNA; Gene; Cell cycle; Chromosome","authors":[{"name":"Lynnette R. Ferguson","is_ca":false},{"name":"Helen Chen","is_ca":true},{"name":"Andrew Collins","is_ca":false},{"name":"Marisa Connell","is_ca":true},{"name":"Giovanna Damia","is_ca":false},{"name":"Santanu Dasgupta","is_ca":false},{"name":"Meenakshi Malhotra","is_ca":false},{"name":"Alan K. Meeker","is_ca":false},{"name":"Amedeo Amedei","is_ca":false},{"name":"Amr Amin","is_ca":false},{"name":"S. M. Ashraf","is_ca":false},{"name":"Katia Aquilano","is_ca":false},{"name":"Asfar S. Azmi","is_ca":false},{"name":"Dipita Bhakta-Guha","is_ca":false},{"name":"Alan Bilsland","is_ca":false},{"name":"Chandra S. Boosani","is_ca":false},{"name":"Sophie Chen","is_ca":false},{"name":"Maria Rosa Ciriolo","is_ca":false},{"name":"Hiromasa Fujii","is_ca":false},{"name":"Gunjan Guha","is_ca":false},{"name":"Dorota Halicka","is_ca":false},{"name":"William G. Helferich","is_ca":false},{"name":"W. Nicol Keith","is_ca":false},{"name":"Sulma I. Mohammed","is_ca":false},{"name":"Elena Niccolai","is_ca":false},{"name":"Xujuan Yang","is_ca":false},{"name":"Kanya Honoki","is_ca":false},{"name":"Virginia R. Parslow","is_ca":false},{"name":"Satya Prakash","is_ca":false},{"name":"Sarallah Rezazadeh","is_ca":false},{"name":"Rodney E. Shackelford","is_ca":false},{"name":"David Sidransky","is_ca":false},{"name":"Phuoc T. Tran","is_ca":false},{"name":"Eddy S. Yang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1162425379905104,"gpt":0.401577689317901,"spread":0.2853351513273906,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003548421,0.0005913044,0.0008599103,0.00150273,0.0002650139,0.0007111114,0.0006225304,0.001029871,0.002682394],"category_scores_gemma":[0.0003729828,0.0001699828,0.0003384734,0.00138425,0.0005104747,0.0009601356,0.0006000097,0.001670573,0.001551924],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006990966,"about_ca_system_score_gemma":0.0008197278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008695651,"about_ca_topic_score_gemma":0.001255405,"domain_scores_codex":[0.9998989,0.00001836945,0.00001265753,0.00001894634,0.00003708255,0.00001400407],"domain_scores_gemma":[0.999877,0.00004770743,0.00001479744,0.000006456401,0.00003655875,0.00001747301],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007751818,0.00007794947,0.0002131279,0.01147285,0.00007137225,0.0002964759,0.00008344881,0.0004073062,0.005053869,0.008190984,0.02801212,0.9460429],"study_design_scores_gemma":[0.0000115935,0.00008437168,0.0008903581,0.00193274,0.00005352419,0.001378803,0.00007052234,0.0000771202,0.001063038,0.003619145,0.9908023,0.00001644133],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001465378,0.998139,0.0001840946,0.0003618755,0.0001754058,0.000002928144,0.00001287972,0.000008520075,0.0009686314],"genre_scores_gemma":[0.0008443558,0.9981141,0.0001971605,0.0001385417,0.00009889856,0.000004500579,0.0000200363,0.000001462991,0.0005808947],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002682394,"threshold_uncertainty_score":0.008973479,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2076154132","doi":"10.1093/emboj/21.7.1855","title":"Structure of the RPA trimerization core and its role in the multistep DNA‐binding mechanism of RPA","year":2002,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":332,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Biological and Environmental Research; National Institutes of Health; U.S. Department of Energy","keywords":"Oligonucleotide; DNA; Replication protein A; Protein subunit; DNA-binding domain; Chemistry; Binding domain; Helix (gastropod); HMG-box; Conformational change; Binding site; Biophysics; Stereochemistry; Crystallography; Biology; DNA-binding protein; Biochemistry; Transcription factor","authors":[{"name":"Elena Bochkareva","is_ca":false},{"name":"Sergey Korolev","is_ca":false},{"name":"Susan P. Lees‐Miller","is_ca":true},{"name":"Alexey Bochkarev","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01353436395364611,"gpt":0.2285826932285004,"spread":0.2150483292748543,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002536268,0.0003642237,0.0003682618,0.0002156523,0.0006364644,0.0007056534,0.0007845897,0.0007922393,0.001893424],"category_scores_gemma":[0.0005704815,0.0004596217,0.0003896748,0.0001888617,0.0005919295,0.0007075742,0.0003175442,0.001458754,0.0009379967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008778964,"about_ca_system_score_gemma":0.0006414219,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001091748,"about_ca_topic_score_gemma":0.0008052691,"domain_scores_codex":[0.9999328,0.00001149136,0.000004430985,0.00001898656,0.00001179962,0.00002058242],"domain_scores_gemma":[0.9996932,0.00006060004,0.00005849348,0.00004588116,0.00003463377,0.0001071524],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001487768,0.0001845001,0.0008753475,0.0001977446,0.00003897946,0.001095645,0.0002072626,0.006963528,0.9612374,0.0152532,0.0009001395,0.01155849],"study_design_scores_gemma":[0.000154411,0.0009369007,0.01467051,0.00007544506,0.00006902112,0.001117532,0.0002059103,0.05849944,0.9073462,0.008211127,0.008584315,0.0001292339],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9735598,0.004934984,0.01580986,0.0007513607,0.0001416245,0.00004926153,0.0001830382,0.0002876916,0.004282392],"genre_scores_gemma":[0.994956,0.000473625,0.002669734,0.0001172785,0.00002389397,0.00001835011,0.0002261031,0.00001656001,0.001498666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001893424,"threshold_uncertainty_score":0.00636965,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2133386306","doi":"10.1158/0008-5472.can-07-5472","title":"Chronic Hypoxia Decreases Synthesis of Homologous Recombination Proteins to Offset Chemoresistance and Radioresistance","year":2008,"lang":"en","type":"article","venue":"Cancer Research","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":327,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Hôpital Notre-Dame; Princess Margaret Cancer Centre; University of Toronto; University Health Network","funders":"National Institute of Environmental Health Sciences; National Cancer Institute","keywords":"RAD51; Homologous recombination; Radioresistance; DNA repair; Biology; Molecular biology; Cell cycle; DNA damage; Radiosensitivity; Cancer research; Cell biology; Chemistry; Cell; Cell culture; DNA; Radiation therapy; Biochemistry; Genetics; Internal medicine; Medicine","authors":[{"name":"Norman Chan","is_ca":true},{"name":"Marianne Koritzinsky","is_ca":false},{"name":"Helen Zhao","is_ca":true},{"name":"Ranjit S. Bindra","is_ca":false},{"name":"Peter M. Glazer","is_ca":false},{"name":"Simon N. Powell","is_ca":false},{"name":"Abdellah Belmaaza","is_ca":true},{"name":"Bradly G. Wouters","is_ca":false},{"name":"Robert G. Bristow","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03081393139601044,"gpt":0.3200716522869141,"spread":0.2892577208909037,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001483093,0.0002748886,0.0004364218,0.0001305487,0.0000835169,0.0003074296,0.0001913506,0.0002846943,0.001213916],"category_scores_gemma":[0.0001418777,0.000138557,0.0002232418,0.0001159448,0.0001844097,0.0002619624,0.0002280805,0.0004455381,0.0002019821],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003504662,"about_ca_system_score_gemma":0.0002404791,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006110517,"about_ca_topic_score_gemma":0.0009756948,"domain_scores_codex":[0.9998484,0.00002096751,0.00001675171,0.00003744642,0.00003624264,0.00004012157],"domain_scores_gemma":[0.9997581,0.00003319155,0.00009285714,0.00002418496,0.00003120777,0.00006045718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000588636,0.00001735679,0.0001354792,0.0000294301,0.00000446583,0.00001175302,0.000005042682,0.00003172033,0.9989231,0.00003204365,0.00003749621,0.0007131328],"study_design_scores_gemma":[0.00001758218,0.0007733954,0.01221543,0.00001101738,0.00002521583,0.0002292382,0.00002341264,0.0006830673,0.9821088,0.0000424655,0.003865918,0.000004433146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880698,0.005625128,0.004113229,0.0002392571,0.00007331878,0.0000406778,0.0003835605,0.0001573432,0.001297829],"genre_scores_gemma":[0.9910595,0.002659381,0.002894651,0.0001397904,0.00003796661,0.00005362909,0.0006789397,0.00005056581,0.002425657],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001213916,"threshold_uncertainty_score":0.004060924,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}