{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":4101,"total_is_capped":false,"direct_labels_cover":8,"predictions_cover":4101,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"f12170854b05","filters":{"topic":"Epigenetics and DNA Methylation"}},"results":[{"id":"W2076154138","doi":"10.1038/nature14248","title":"Integrative analysis of 111 reference human epigenomes","year":2015,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7110,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; University of British Columbia; Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Common Fund; National Institute of Environmental Health Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute on Deafness and Other Communication Disorders; National Institute on Drug Abuse; National Institute of Mental Health; National Heart, Lung, and Blood Institute; National Institute on Aging; Tsinghua National Laboratory for Information Science and Technology; National Center for Advancing Translational Sciences; National Human Genome Research Institute; Tsinghua University; National Natural Science Foundation of China; National Institutes of Health; National Science Foundation; Washington University in St. Louis; National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences; Massachusetts General Hospital; Howard Hughes Medical Institute","keywords":"Epigenomics; DNA methylation; Computational biology; Biology; Human genome; Genetics; Epigenome; Chromatin; Genome; Gene; Gene expression","authors":[{"name":"Anshul Kundaje","is_ca":false},{"name":"Wouter Meuleman","is_ca":false},{"name":"Jason Ernst","is_ca":false},{"name":"Misha Bilenky","is_ca":true},{"name":"Angela Yen","is_ca":false},{"name":"Alireza Heravi‐Moussavi","is_ca":true},{"name":"Pouya Kheradpour","is_ca":false},{"name":"Zhizhuo Zhang","is_ca":false},{"name":"Jianrong Wang","is_ca":false},{"name":"Michael J. Ziller","is_ca":false},{"name":"Viren Amin","is_ca":false},{"name":"John W. Whitaker","is_ca":false},{"name":"Matthew D. Schultz","is_ca":false},{"name":"Lucas D. Ward","is_ca":false},{"name":"Abhishek Sarkar","is_ca":false},{"name":"Gerald Quon","is_ca":false},{"name":"Richard Sandstrom","is_ca":false},{"name":"Matthew L. Eaton","is_ca":false},{"name":"Yi-Chieh Wu","is_ca":false},{"name":"Andreas R. Pfenning","is_ca":false},{"name":"Xinchen Wang","is_ca":false},{"name":"Melina Claussnitzer","is_ca":false},{"name":"Yaping Liu","is_ca":false},{"name":"Cristian Coarfa","is_ca":false},{"name":"R. Alan Harris","is_ca":false},{"name":"Noam Shoresh","is_ca":false},{"name":"Charles B. Epstein","is_ca":false},{"name":"Elizabeta Gjoneska","is_ca":false},{"name":"Danny Leung","is_ca":false},{"name":"Wei Xie","is_ca":false},{"name":"R. David Hawkins","is_ca":false},{"name":"Ryan Lister","is_ca":false},{"name":"Chibo Hong","is_ca":false},{"name":"Philippe Gascard","is_ca":false},{"name":"Andrew J. Mungall","is_ca":true},{"name":"Richard A. Moore","is_ca":true},{"name":"Eric Chuah","is_ca":true},{"name":"Angela Tam","is_ca":true},{"name":"Theresa K. Canfield","is_ca":false},{"name":"R. Scott Hansen","is_ca":false},{"name":"Rajinder Kaul","is_ca":false},{"name":"Peter J. Sabo","is_ca":false},{"name":"Mukul S. Bansal","is_ca":false},{"name":"Annaïck Carles","is_ca":true},{"name":"Jesse R. Dixon","is_ca":false},{"name":"Kai-How Farh","is_ca":false},{"name":"Soheil Feizi","is_ca":false},{"name":"Rosa Karlić","is_ca":false},{"name":"Ah-Ram Kim","is_ca":false},{"name":"Ashwinikumar Kulkarni","is_ca":false},{"name":"Daofeng Li","is_ca":false},{"name":"Rebecca F. Lowdon","is_ca":false},{"name":"GiNell Elliott","is_ca":false},{"name":"Tim R. Mercer","is_ca":false},{"name":"Shane Neph","is_ca":false},{"name":"Vitor Onuchic","is_ca":false},{"name":"Paz Polak","is_ca":false},{"name":"Nisha Rajagopal","is_ca":false},{"name":"Pradipta Ray","is_ca":false},{"name":"Richard Sallari","is_ca":false},{"name":"Kyle Siebenthall","is_ca":false},{"name":"Nicholas A. Sinnott‐Armstrong","is_ca":false},{"name":"Michael Stevens","is_ca":false},{"name":"Robert E. Thurman","is_ca":false},{"name":"Jie Wu","is_ca":false},{"name":"Bo Zhang","is_ca":false},{"name":"Xin Zhou","is_ca":false},{"name":"Arthur E. Beaudet","is_ca":false},{"name":"Laurie A. Boyer","is_ca":false},{"name":"Philip L. De Jager","is_ca":false},{"name":"Peggy Farnham","is_ca":false},{"name":"Susan J. Fisher","is_ca":false},{"name":"David Haussler","is_ca":false},{"name":"Steven J.M. Jones","is_ca":true},{"name":"Wei Li","is_ca":false},{"name":"Marco A. Marra","is_ca":true},{"name":"Michael T. McManus","is_ca":false},{"name":"Shamil Sunyaev","is_ca":false},{"name":"James A. Thomson","is_ca":false},{"name":"Thea D. Tlsty","is_ca":false},{"name":"Wei Wang","is_ca":false},{"name":"Robert A. Waterland","is_ca":false},{"name":"Michael Q. Zhang","is_ca":false},{"name":"Lisa H. Chadwick","is_ca":false},{"name":"B Bernstein","is_ca":false},{"name":"J Costello","is_ca":false},{"name":"Joseph R. Ecker","is_ca":false},{"name":"Martin Hirst","is_ca":true},{"name":"Alexander Meissner","is_ca":false},{"name":"Aleksandar Milosavljević","is_ca":false},{"name":"Bing Ren","is_ca":false},{"name":"J Stamatoyannopoulos","is_ca":false},{"name":"Ting Wang","is_ca":false},{"name":"Manolis Kellis","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02391063745499477,"gpt":0.3307579090249536,"spread":0.3068472715699588,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001143819,0.0004691878,0.0008789288,0.002176328,0.0004042729,0.0007580416,0.0004928918,0.0003018064,0.002816617],"category_scores_gemma":[0.002418736,0.0003301785,0.00124618,0.003029544,0.0002193561,0.0003031557,0.001223075,0.0006270165,0.0009568913],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004740526,"about_ca_system_score_gemma":0.0006356842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002953024,"about_ca_topic_score_gemma":0.005369241,"domain_scores_codex":[0.9988403,0.0002275585,0.000065179,0.0004233029,0.0003252092,0.0001185964],"domain_scores_gemma":[0.9989349,0.0003144965,0.00009923687,0.000278947,0.0002938494,0.00007848419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002108729,0.0001887585,0.06801657,0.001750448,0.00145381,0.001076917,0.001481873,0.01004735,0.6552163,0.007544203,0.007065451,0.2440496],"study_design_scores_gemma":[0.0001910762,0.0006743583,0.5883796,0.0002708666,0.00163591,0.002539713,0.0007420371,0.01615047,0.2353733,0.008337316,0.145556,0.0001493555],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6267311,0.007834908,0.2435332,0.0004422836,0.0001233328,0.0007250379,0.09892154,0.002170202,0.0195184],"genre_scores_gemma":[0.5168983,0.004142919,0.2156807,0.0003728227,0.00006258908,0.0007560074,0.2553989,0.001125985,0.005561702],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002953024,"threshold_uncertainty_score":0.009422541,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2060608189","doi":"10.1038/nature09784","title":"The Polycomb complex PRC2 and its mark in life","year":2011,"lang":"en","type":"review","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3366,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institutes of Health; Institute of Cancer Research; Howard Hughes Medical Institute","keywords":"PRC2; Polycomb-group proteins; Chromatin; Histone H3; Cell biology; Biology; Histone; Genetics; Gene; Gene expression; Repressor","authors":[{"name":"Raphaël Margueron","is_ca":false},{"name":"Danny Reinberg","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0359584793311401,"gpt":0.3292322941449638,"spread":0.2932738148138237,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009180912,0.001136451,0.001311695,0.001241667,0.0004242684,0.001414218,0.00158627,0.001914358,0.002722382],"category_scores_gemma":[0.0008667264,0.000500724,0.0003071647,0.002485631,0.001622365,0.002267269,0.001203759,0.003029301,0.002361598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00140465,"about_ca_system_score_gemma":0.001350321,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001580804,"about_ca_topic_score_gemma":0.003426915,"domain_scores_codex":[0.9997625,0.0000312208,0.00002809372,0.00004408641,0.0001096777,0.00002444694],"domain_scores_gemma":[0.999671,0.0001311896,0.00004726111,0.00001892678,0.00008301817,0.00004854415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00011069,0.00003556077,0.0002303465,0.005633146,0.00007266528,0.0002716618,0.00006339858,0.0007482618,0.005081803,0.01372281,0.07468037,0.8993493],"study_design_scores_gemma":[0.000009203416,0.00001669915,0.0003646768,0.0004236046,0.00003088887,0.0004320742,0.00002611399,0.00006802714,0.0006456741,0.003235014,0.9947365,0.00001158138],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0000909985,0.996702,0.0004741423,0.0006399129,0.0007210135,0.000002981385,0.0000158586,0.000009503355,0.001343495],"genre_scores_gemma":[0.001007945,0.9949824,0.0004360954,0.0005416847,0.0009999892,0.000007554724,0.000042658,0.000003498261,0.001978149],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002722382,"threshold_uncertainty_score":0.01019144,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084160423","doi":"10.1038/nbt1010-1045","title":"The NIH Roadmap Epigenomics Mapping Consortium","year":2010,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2046,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"National Human Genome Research Institute","keywords":"Epigenomics; Computational biology; Ex vivo; Human disease; Biology; Genetics; In vivo; Gene; DNA methylation; Gene expression","authors":[{"name":"B Bernstein","is_ca":false},{"name":"J Stamatoyannopoulos","is_ca":false},{"name":"J Costello","is_ca":false},{"name":"Bing Ren","is_ca":false},{"name":"Aleksandar Milosavljevic","is_ca":false},{"name":"Alexander Meissner","is_ca":false},{"name":"Manolis Kellis","is_ca":false},{"name":"Marco A. Marra","is_ca":true},{"name":"Arthur L. Beaudet","is_ca":false},{"name":"Joseph R. Ecker","is_ca":false},{"name":"Peggy Farnham","is_ca":false},{"name":"Martin Hirst","is_ca":true},{"name":"Eric S. Lander","is_ca":false},{"name":"Tarjei S. Mikkelsen","is_ca":false},{"name":"James A. Thomson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00389924591743176,"gpt":0.2358489717402764,"spread":0.2319497258228446,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004466122,0.0009050576,0.001171886,0.003911735,0.001482322,0.001815397,0.002167069,0.001006496,0.02113575],"category_scores_gemma":[0.004084272,0.0004954507,0.0006076223,0.003931296,0.0003469933,0.000789758,0.002274394,0.001590039,0.008355592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001577207,"about_ca_system_score_gemma":0.00770023,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02854821,"about_ca_topic_score_gemma":0.05232424,"domain_scores_codex":[0.998354,0.0003419184,0.00006949363,0.0003443086,0.0005954883,0.000294781],"domain_scores_gemma":[0.9953561,0.0006414141,0.0002644038,0.001038965,0.001628877,0.001070241],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001450656,0.0003251038,0.01075084,0.000686596,0.0002697364,0.0002562598,0.0003300517,0.001752137,0.06383024,0.02738932,0.5868337,0.3061255],"study_design_scores_gemma":[0.0003028197,0.0001364913,0.03063559,0.0001514527,0.0002631212,0.0002631655,0.0001243398,0.003286583,0.02634778,0.01508609,0.9233297,0.0000727521],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.04908925,0.007954743,0.1498784,0.01796781,0.002263293,0.001972653,0.6205869,0.01818698,0.1320999],"genre_scores_gemma":[0.05353103,0.004404017,0.2361235,0.003875646,0.0004392321,0.00352921,0.6453109,0.001929294,0.05085706],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.02854821,"threshold_uncertainty_score":0.07070613,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055237453","doi":"10.1038/nrg3142","title":"Epigenetics and the environment: emerging patterns and implications","year":2012,"lang":"en","type":"review","venue":"Nature Reviews Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1926,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Cancer Research; Institut National Du Cancer; Ligue Contre le Cancer; Agence Nationale de la Recherche","keywords":"Epigenetics; Biology; DNA methylation; Epigenesis; Chromatin; Disease; Phenotype; Epigenomics; Genetics; Evolutionary biology; Computational biology; Ecology; Gene expression; Gene","authors":[{"name":"Robert Feil","is_ca":false},{"name":"Mario F. Fraga","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03102289477500049,"gpt":0.3299062737325293,"spread":0.2988833789575288,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001089954,0.0008617961,0.001652274,0.001265742,0.0003715304,0.001790746,0.001284244,0.002273235,0.002442961],"category_scores_gemma":[0.001107011,0.0003131306,0.0003404089,0.002716702,0.001993623,0.00269013,0.001414586,0.002711454,0.001015512],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001060009,"about_ca_system_score_gemma":0.001348552,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001391401,"about_ca_topic_score_gemma":0.003083872,"domain_scores_codex":[0.9997589,0.0000485218,0.000023156,0.00005560411,0.00008631356,0.00002762446],"domain_scores_gemma":[0.9994004,0.0003306292,0.00005744685,0.00002047594,0.0001199957,0.00007108265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000118899,0.00003545759,0.0005291509,0.006888797,0.0001041459,0.0003135728,0.0001584529,0.0006292827,0.003882585,0.0181424,0.04607528,0.923122],"study_design_scores_gemma":[0.00001898702,0.00003570689,0.001674143,0.001501892,0.00007750905,0.001190984,0.0002257838,0.0001506821,0.0005988142,0.0138795,0.9806104,0.0000357091],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00009501215,0.9976675,0.0002223195,0.001147479,0.0003081325,8.510289e-7,0.00001087424,0.000005460536,0.0005423501],"genre_scores_gemma":[0.0009432075,0.9973077,0.0001945317,0.000567563,0.0005604055,0.000002755493,0.00001419733,0.00000141969,0.0004082654],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002442961,"threshold_uncertainty_score":0.008172512,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2065498897","doi":"10.1038/nature09165","title":"Conserved role of intragenic DNA methylation in regulating alternative promoters","year":2010,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1765,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Douglas Mental Health University Institute; University of British Columbia; BC Cancer Agency","funders":"National Institute of Environmental Health Sciences; Howard Hughes Medical Institute","keywords":"Promoter; DNA methylation; Biology; Epigenetics of physical exercise; CpG site; Methylation; Genetics; Gene; Differentially methylated regions; Molecular biology; RNA-Directed DNA Methylation; Transcription (linguistics); Regulation of gene expression; Gene expression","authors":[{"name":"Alika K. Maunakea","is_ca":false},{"name":"Raman P. Nagarajan","is_ca":false},{"name":"Mikhail Bilenky","is_ca":true},{"name":"Tracy Ballinger","is_ca":false},{"name":"Cletus A. D’Souza","is_ca":true},{"name":"Shaun D. Fouse","is_ca":false},{"name":"Brett Johnson","is_ca":false},{"name":"Chibo Hong","is_ca":false},{"name":"Cydney Nielsen","is_ca":true},{"name":"Yongjun Zhao","is_ca":true},{"name":"Gustavo Turecki","is_ca":true},{"name":"Allen Delaney","is_ca":true},{"name":"Richard Varhol","is_ca":true},{"name":"Nina Thiessen","is_ca":true},{"name":"Ksenya Shchors","is_ca":false},{"name":"Vivi M. Heine","is_ca":false},{"name":"David H. Rowitch","is_ca":false},{"name":"Xiaoyun Xing","is_ca":false},{"name":"Chris Fiore","is_ca":false},{"name":"Maximiliaan Schillebeeckx","is_ca":false},{"name":"Steven J.M. Jones","is_ca":true},{"name":"David Haussler","is_ca":false},{"name":"Marco A. Marra","is_ca":true},{"name":"Martin Hirst","is_ca":true},{"name":"Ting Wang","is_ca":false},{"name":"J Costello","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004945052448378222,"gpt":0.2580452265444578,"spread":0.2531001740960796,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002281564,0.0002904963,0.0002609307,0.0003325301,0.000308014,0.0006040878,0.0005558703,0.0004610151,0.001558632],"category_scores_gemma":[0.0002325535,0.0002780524,0.0002592003,0.0001951396,0.0003919112,0.0005607257,0.0005104758,0.0009372556,0.0006875205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003013176,"about_ca_system_score_gemma":0.0001915337,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003935388,"about_ca_topic_score_gemma":0.0007252863,"domain_scores_codex":[0.9998339,0.00002325538,0.000006687388,0.00006063385,0.00004136738,0.0000340508],"domain_scores_gemma":[0.9997877,0.00003708727,0.00003243282,0.0000690641,0.00003202047,0.00004161158],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001045492,0.00001225367,0.0005931592,0.00002205992,0.000006170998,0.0001264759,0.0000363326,0.0001383657,0.9901813,0.003053632,0.00006485899,0.005660891],"study_design_scores_gemma":[0.00001799081,0.0001340346,0.01168744,0.000008708501,0.00002125268,0.0008488738,0.00005092373,0.002478309,0.9766114,0.00274062,0.005386066,0.00001424018],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9102827,0.005907362,0.06934392,0.0004236163,0.000169753,0.00002929009,0.0002952315,0.0005525633,0.0129957],"genre_scores_gemma":[0.9838439,0.0008260267,0.009603585,0.0001032027,0.00003835699,0.00001468628,0.0002609878,0.00008588794,0.005223436],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001558632,"threshold_uncertainty_score":0.005214155,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2101259235","doi":"10.1038/ng1598","title":"Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells","year":2005,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1754,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"","keywords":"Biology; DNA methylation; CpG site; Epigenetics; Methylation; Promoter; Differentially methylated regions; Epigenetics of physical exercise; Genetics; Illumina Methylation Assay; RNA-Directed DNA Methylation; Gene; Human genome; Molecular biology; Epigenomics; Chromosome; Genome; Gene expression","authors":[{"name":"Michaël Weber","is_ca":false},{"name":"Jonathan Davies","is_ca":true},{"name":"David Wittig","is_ca":false},{"name":"Edward J. Oakeley","is_ca":false},{"name":"Michael Haase","is_ca":false},{"name":"Wan L. Lam","is_ca":true},{"name":"Dirk Schübeler","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01811698372051576,"gpt":0.3116644724781628,"spread":0.2935474887576471,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001127031,0.0001496748,0.0003085689,0.0006182675,0.0002450744,0.0003924641,0.0002272545,0.0002751506,0.00192944],"category_scores_gemma":[0.0002819351,0.000285917,0.0002490054,0.0004213286,0.0003072459,0.0001254258,0.0002480569,0.0004849182,0.0004324604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002295811,"about_ca_system_score_gemma":0.0001574097,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002370754,"about_ca_topic_score_gemma":0.002912133,"domain_scores_codex":[0.9998842,0.00001249355,0.000007434515,0.00003587919,0.00003182118,0.00002814042],"domain_scores_gemma":[0.9998405,0.00006142379,0.00002397462,0.0000216336,0.00002096075,0.00003147878],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004904205,0.00001561045,0.003875341,0.00002566698,0.00002626528,0.00006716303,0.00009160613,0.00008006001,0.9930467,0.0001806292,0.0000582545,0.002042301],"study_design_scores_gemma":[0.00007616255,0.0003490162,0.232232,0.000005752004,0.0001235964,0.002136501,0.0002178217,0.00142397,0.7596664,0.000516744,0.00323422,0.00001781692],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947163,0.001256072,0.002191535,0.00008187971,0.00001123793,0.000009014188,0.0008775025,0.0000677921,0.0007885703],"genre_scores_gemma":[0.9963152,0.0005091031,0.0006754001,0.00003245162,0.000005708936,0.00001475513,0.001139411,0.00002395799,0.001283986],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002370754,"threshold_uncertainty_score":0.006454587,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1975528145","doi":"10.4161/epi.23470","title":"Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray","year":2013,"lang":"en","type":"article","venue":"Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1719,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital; Toronto General Hospital; University Health Network; University of Toronto; SickKids Foundation; Hospital for Sick Children; Ontario Institute for Cancer Research","funders":"","keywords":"Biology; DNA methylation; Illumina Methylation Assay; Genetics; Methylation; Epigenetics; Microarray; DNA microarray; Differentially methylated regions; Computational biology; Gene; Gene expression","authors":[{"name":"Y. Ann Chen","is_ca":true},{"name":"Mathieu Lemire","is_ca":true},{"name":"Sanaa Choufani","is_ca":true},{"name":"Darci T. Butcher","is_ca":true},{"name":"Daria Grafodatskaya","is_ca":true},{"name":"Brent W. Zanke","is_ca":true},{"name":"Steven Gallinger","is_ca":true},{"name":"Thomas J. Hudson","is_ca":true},{"name":"Rosanna Weksberg","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01179436864305644,"gpt":0.2683694433457032,"spread":0.2565750747026468,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002504372,0.001085011,0.0009389686,0.001520289,0.0006217183,0.0007970284,0.0009051537,0.001412994,0.00286098],"category_scores_gemma":[0.004029614,0.001024886,0.0008803039,0.001333498,0.0004764448,0.0005095121,0.0008433046,0.001513152,0.00216918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005225557,"about_ca_system_score_gemma":0.0006922194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001108677,"about_ca_topic_score_gemma":0.003077243,"domain_scores_codex":[0.9963625,0.0007684616,0.0001965093,0.001283112,0.001057946,0.0003315401],"domain_scores_gemma":[0.9987522,0.0004510547,0.0002108486,0.0002006031,0.0002807667,0.0001045392],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002208008,0.00005132057,0.00384287,0.0002361523,0.00008451267,0.0001944591,0.0001220434,0.000592181,0.962988,0.001590635,0.001292233,0.02878487],"study_design_scores_gemma":[0.0000930172,0.0004684222,0.03220777,0.0001065237,0.0002648141,0.001342767,0.00006333266,0.01602533,0.8983721,0.002109264,0.04886084,0.00008570706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2679747,0.006025734,0.6960413,0.0009875272,0.0004185577,0.001218121,0.01180015,0.004274962,0.01125894],"genre_scores_gemma":[0.2362656,0.001875012,0.7334207,0.001909489,0.0001049677,0.002548548,0.01396951,0.0007069408,0.009199242],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00286098,"threshold_uncertainty_score":0.01324457,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2024373518","doi":"10.1038/ng.518","title":"Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin","year":2010,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1650,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"EZH2; Histone H3; Biology; PRC2; Histone methyltransferase; Germinal center; Cancer research; Diffuse large B-cell lymphoma; Histone methylation; Histone; Molecular biology; B cell; Genetics; DNA methylation; Gene; Gene expression; Antibody","authors":[{"name":"Ryan D. Morin","is_ca":true},{"name":"Nathalie A. Johnson","is_ca":true},{"name":"Tesa Severson","is_ca":true},{"name":"Andrew J. Mungall","is_ca":true},{"name":"Jianghong An","is_ca":true},{"name":"Rodrigo Goya","is_ca":true},{"name":"Jessica E. Paul","is_ca":true},{"name":"Merrill Boyle","is_ca":true},{"name":"Bruce W. Woolcock","is_ca":true},{"name":"Florian Kuchenbauer","is_ca":true},{"name":"Damian Yap","is_ca":true},{"name":"R. Keith Humphries","is_ca":true},{"name":"Obi L. Griffith","is_ca":true},{"name":"Sohrab P. Shah","is_ca":true},{"name":"Henry Zhu","is_ca":false},{"name":"Michelle Kimbara","is_ca":false},{"name":"Pavel Shashkin","is_ca":false},{"name":"Jean Charlot","is_ca":false},{"name":"Marianna Tcherpakov","is_ca":false},{"name":"Richard Corbett","is_ca":true},{"name":"Angela Tam","is_ca":true},{"name":"Richard Varhol","is_ca":true},{"name":"Duane E. Smailus","is_ca":true},{"name":"Michelle Moksa","is_ca":true},{"name":"Yongjun Zhao","is_ca":true},{"name":"Allen Delaney","is_ca":true},{"name":"Hong Qian","is_ca":true},{"name":"İnanç Birol","is_ca":true},{"name":"Jacqueline E. Schein","is_ca":true},{"name":"Richard A. Moore","is_ca":true},{"name":"Robert A. Holt","is_ca":true},{"name":"Doug Horsman","is_ca":true},{"name":"Joseph M. Connors","is_ca":true},{"name":"Steven J.M. Jones","is_ca":true},{"name":"Samuel Aparício","is_ca":true},{"name":"Martin Hirst","is_ca":true},{"name":"Randy D. Gascoyne","is_ca":true},{"name":"Marco A. Marra","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004996011660939228,"gpt":0.2618415122544837,"spread":0.2568455005935444,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001470718,0.0002554269,0.0002163831,0.0005945717,0.000211766,0.0002685364,0.0002156206,0.0004699422,0.001686665],"category_scores_gemma":[0.0004046531,0.0001827483,0.0001701897,0.0002790587,0.0003627655,0.0001643739,0.000307729,0.0002367871,0.00022513],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002505238,"about_ca_system_score_gemma":0.0001354898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007212372,"about_ca_topic_score_gemma":0.0009612408,"domain_scores_codex":[0.9998746,0.00001791119,0.0000186718,0.00002596638,0.00003265205,0.00003016839],"domain_scores_gemma":[0.9998387,0.00004335513,0.00004973535,0.00001103187,0.000009381768,0.00004770215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002854187,0.0001078459,0.03328795,0.00006226679,0.0001016741,0.008582198,0.0001459834,0.0004557958,0.9446657,0.0003740274,0.000212975,0.009149374],"study_design_scores_gemma":[0.0007650352,0.001291506,0.4292047,0.00001784676,0.0005127068,0.1069543,0.0004945158,0.003841453,0.4518799,0.001166478,0.003815435,0.00005608621],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992431,0.0001115012,0.0001534549,0.0000190711,0.000004329991,0.000004336372,0.00005720002,0.000008895849,0.000398185],"genre_scores_gemma":[0.9995672,0.0000452112,0.00008973487,0.000006073013,0.000003914937,0.000002680723,0.0000434273,0.000003895649,0.0002377029],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001686665,"threshold_uncertainty_score":0.005642474,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1905278501","doi":"10.1016/j.cell.2015.07.056","title":"DNA-Demethylating Agents Target Colorectal Cancer Cells by Inducing Viral Mimicry by Endogenous Transcripts","year":2015,"lang":"en","type":"article","venue":"Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1524,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Toronto General Hospital; University of Toronto; Princess Margaret Cancer Centre; University Health Network","funders":"National Cancer Institute","keywords":"Biology; IRF7; Cancer research; Gene knockdown; Colorectal cancer; RNA silencing; Small interfering RNA; Virology; RNA; Druggability; Transfection; Innate immune system; RNA interference; Cancer; Genetics; Cell culture; Gene; Immune system","authors":[{"name":"David Roulois","is_ca":true},{"name":"Helen Loo Yau","is_ca":true},{"name":"Rajat Singhania","is_ca":true},{"name":"Yadong Wang","is_ca":true},{"name":"Arnavaz Danesh","is_ca":true},{"name":"Shu Yi Shen","is_ca":true},{"name":"Han Han","is_ca":false},{"name":"Gangning Liang","is_ca":false},{"name":"Peter A. Jones","is_ca":false},{"name":"Trevor J. Pugh","is_ca":true},{"name":"Catherine O′Brien","is_ca":true},{"name":"Daniel D. De Carvalho","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02669207330958193,"gpt":0.2508067011173336,"spread":0.2241146278077516,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000151213,0.0003099556,0.0001902271,0.0002647985,0.0001622881,0.0003577411,0.0002784424,0.0002877775,0.002084253],"category_scores_gemma":[0.000155904,0.0001964069,0.0001962887,0.0001544913,0.0001830247,0.0002215862,0.0002132162,0.0005490219,0.000422672],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004234534,"about_ca_system_score_gemma":0.0001853346,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001218378,"about_ca_topic_score_gemma":0.002624935,"domain_scores_codex":[0.999893,0.00002188089,0.000006461949,0.00002177236,0.00002617436,0.00003075846],"domain_scores_gemma":[0.9999273,0.00002145137,0.00001662554,0.00001394295,0.000008191605,0.00001251942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007006957,0.000017699,0.0001151754,0.00002491883,0.000004100573,0.00003071218,0.00001090271,0.00009806739,0.9976158,0.0002742819,0.0000462481,0.001692166],"study_design_scores_gemma":[0.000007563648,0.0001093083,0.0005816251,0.000001658078,0.000005881896,0.00004625429,0.00001305567,0.0005675975,0.9972908,0.00002872389,0.001346298,0.000001272658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9803686,0.004372957,0.008404518,0.0002457408,0.0000844047,0.00008657712,0.0003458888,0.0003042619,0.005786971],"genre_scores_gemma":[0.9937028,0.001011114,0.00220853,0.00003104856,0.000008258169,0.00001800904,0.0001671445,0.00002544243,0.002827761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002084253,"threshold_uncertainty_score":0.006972551,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2092015913","doi":"10.1038/nature01572","title":"Bmi-1 determines the proliferative capacity of normal and leukaemic stem cells","year":2003,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1457,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hôpital Maisonneuve-Rosemont; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research; Leukemia and Lymphoma Society","keywords":"Stem cell; Progenitor cell; Biology; Cancer research; Cell biology; Population; Cancer stem cell; BMI1; Immunology; Medicine","authors":[{"name":"Julie Lessard","is_ca":true},{"name":"Guy Sauvageau","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009255410419489126,"gpt":0.2359062615112588,"spread":0.2266508510917697,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000181604,0.0001203369,0.0001688429,0.0005638024,0.0001811042,0.0004618867,0.000249324,0.0002125109,0.001547245],"category_scores_gemma":[0.0003179513,0.0002368709,0.0001166063,0.0002586497,0.0002658212,0.0002626452,0.0002927609,0.0004901951,0.0004798154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003717427,"about_ca_system_score_gemma":0.0001845277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008793548,"about_ca_topic_score_gemma":0.001359306,"domain_scores_codex":[0.9998771,0.00001775464,0.000008510559,0.00002015107,0.00004427028,0.00003235567],"domain_scores_gemma":[0.9997634,0.00006335892,0.00004002832,0.00002564355,0.00003703872,0.00007051192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002082185,0.000006926867,0.002149861,0.00001288118,0.000003743392,0.00003061473,0.0000284847,0.00006566465,0.9937495,0.000790232,0.00006440404,0.002889341],"study_design_scores_gemma":[0.00003702079,0.0002079495,0.07252206,0.00001108152,0.0000244935,0.0005435305,0.0001214067,0.00174338,0.9166956,0.001309887,0.006766641,0.00001702165],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927893,0.001939849,0.002135195,0.0001010552,0.00002074314,0.000009459785,0.0004342768,0.00007545901,0.002494652],"genre_scores_gemma":[0.995129,0.0006117192,0.0008579704,0.00003849981,0.00001140952,0.00001193469,0.000628622,0.00002715367,0.002683708],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001547245,"threshold_uncertainty_score":0.005176067,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2591367881","doi":"10.1038/nmeth.4184","title":"Detecting DNA cytosine methylation using nanopore sequencing","year":2017,"lang":"en","type":"article","venue":"Nature Methods","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1257,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Minion; Nanopore sequencing; Nanopore; 5-Methylcytosine; DNA sequencer; DNA methylation; Cytosine; DNA; Computational biology; DNA sequencing; Hidden Markov model; Sequencing by ligation; genomic DNA; Human genome; Computer science; Biology; Genetics; Genome; Genomic library; Nanotechnology; Gene; Base sequence; Materials science; Artificial intelligence","authors":[{"name":"Jared T. Simpson","is_ca":true},{"name":"Rachael E. Workman","is_ca":false},{"name":"Philip C. Zuzarte","is_ca":true},{"name":"Matei David","is_ca":true},{"name":"Lewis Jonathan Dursi","is_ca":true},{"name":"Winston Timp","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04533398034043244,"gpt":0.41577286745941,"spread":0.3704388871189775,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003772455,0.0004562378,0.000290873,0.0003658825,0.0003065846,0.0004748235,0.0005904014,0.0009586653,0.00152755],"category_scores_gemma":[0.0007270714,0.0003448573,0.0002557059,0.000196727,0.00030024,0.0005923677,0.000562161,0.0008306653,0.0008414917],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002769294,"about_ca_system_score_gemma":0.0002613505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005513182,"about_ca_topic_score_gemma":0.002012552,"domain_scores_codex":[0.9995758,0.00006757599,0.00001782872,0.0001503704,0.0001425363,0.00004590999],"domain_scores_gemma":[0.9995529,0.0001959225,0.00005680379,0.00007473442,0.0000681598,0.00005146002],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003827366,0.00002212536,0.0007841766,0.00004621773,0.0000231289,0.00002553201,0.00002311249,0.0002933641,0.9866049,0.0006702005,0.0002667803,0.01120224],"study_design_scores_gemma":[0.000005846641,0.00008642345,0.002240819,0.00000948231,0.00002065237,0.0001226243,0.00002498587,0.01034356,0.9814268,0.00125439,0.004444655,0.00001967707],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5343905,0.003760891,0.441092,0.0008677223,0.0004687691,0.0001780442,0.002507549,0.003086819,0.01364763],"genre_scores_gemma":[0.7364927,0.001672328,0.2475213,0.0008714618,0.00007902896,0.0002309925,0.001558201,0.000155593,0.01141851],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.00152755,"threshold_uncertainty_score":0.005110145,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2028630156","doi":"10.1242/dev.033183","title":"The maternal-to-zygotic transition: a play in two acts","year":2009,"lang":"en","type":"review","venue":"Development","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1249,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada Research Chairs; Hospital for Sick Children; University of Toronto","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Biology; Maternal to zygotic transition; Zygote; Embryo; Gene; Evolutionary biology; Genome; Genetics; Embryogenesis; Cell biology","authors":[{"name":"Wael Tadros","is_ca":true},{"name":"Howard D. Lipshitz","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02587045014523557,"gpt":0.3360144041020196,"spread":0.310143953956784,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006131758,0.0007458161,0.0009628825,0.001219547,0.000517284,0.001228197,0.00121923,0.001837579,0.002154644],"category_scores_gemma":[0.0004315643,0.000243686,0.0002109335,0.001289228,0.002063878,0.002520742,0.001028838,0.002048237,0.001896698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001296425,"about_ca_system_score_gemma":0.0009974089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008683933,"about_ca_topic_score_gemma":0.001270405,"domain_scores_codex":[0.9997573,0.00004087607,0.00002953442,0.00006381273,0.00008160908,0.00002681107],"domain_scores_gemma":[0.9998224,0.00007447769,0.00002269062,0.00001031732,0.00003123121,0.00003897188],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009796063,0.00003462824,0.0003662859,0.003340416,0.00003129093,0.0004705053,0.0003097799,0.0002323732,0.006519246,0.04569523,0.01845316,0.9244491],"study_design_scores_gemma":[0.000008112317,0.00004092602,0.0006540858,0.0005510369,0.00001878473,0.001435741,0.0001325198,0.00005111207,0.001229481,0.007250804,0.9886146,0.00001286821],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004823384,0.9914122,0.001336814,0.001161476,0.0005113358,0.000006505395,0.00001794112,0.00002603042,0.005045339],"genre_scores_gemma":[0.005381669,0.9879369,0.001533808,0.0006908865,0.0004265301,0.00001552177,0.00002837713,0.000007067481,0.003979214],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002154644,"threshold_uncertainty_score":0.009406328,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055986128","doi":"10.1016/j.ccr.2014.07.028","title":"Gene Body Methylation Can Alter Gene Expression and Is a Therapeutic Target in Cancer","year":2014,"lang":"en","type":"article","venue":"Cancer Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1246,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; University Health Network","funders":"National Institutes of Health; National Cancer Institute; Princess Margaret Cancer Foundation","keywords":"DNA methylation; Methylation; Biology; Gene; Promoter; Gene expression; Epigenetics; Carcinogenesis; Regulation of gene expression; Epigenetics of physical exercise; RNA-Directed DNA Methylation; Demethylation; Cancer research; Genetics; Molecular biology","authors":[{"name":"Xiaojing Yang","is_ca":false},{"name":"Han Han","is_ca":false},{"name":"Daniel D. De Carvalho","is_ca":true},{"name":"Fides D. Lay","is_ca":false},{"name":"Peter A. Jones","is_ca":false},{"name":"Gangning Liang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01302609287177919,"gpt":0.278225427895976,"spread":0.2651993350241968,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002271311,0.0002204916,0.0002499188,0.0003170968,0.0002523476,0.0003911244,0.0002047524,0.00037427,0.003458136],"category_scores_gemma":[0.0002011079,0.0001584101,0.000173519,0.0003088824,0.0003148081,0.0002732539,0.0002595957,0.0006883266,0.0005064942],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003398936,"about_ca_system_score_gemma":0.0002633553,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005255853,"about_ca_topic_score_gemma":0.001088108,"domain_scores_codex":[0.999905,0.0000224823,0.000004448268,0.00001752201,0.00002959972,0.00002103636],"domain_scores_gemma":[0.9999504,0.00001187421,0.00001330367,0.00000917931,0.000007208476,0.000007983189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005036651,0.0001217925,0.003213296,0.0002479565,0.00006966614,0.0003238682,0.0001093833,0.0009217887,0.8946617,0.007406137,0.002172937,0.0902478],"study_design_scores_gemma":[0.00005745699,0.0008957238,0.0135607,0.00003245617,0.0001058129,0.001221466,0.0001206304,0.001449792,0.9274713,0.003234713,0.05183519,0.00001471726],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8064721,0.0938677,0.02864195,0.008381699,0.0009008422,0.0001856715,0.001290791,0.0009389521,0.05932034],"genre_scores_gemma":[0.9767731,0.01119235,0.001506883,0.0002854112,0.00007058449,0.00002971136,0.0001800433,0.00003786776,0.009924157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003458136,"threshold_uncertainty_score":0.01156867,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2990428470","doi":"10.1186/s13059-019-1824-y","title":"DNA methylation aging clocks: challenges and recommendations","year":2019,"lang":"en","type":"review","venue":"Genome biology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1103,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Genetics; National Institute of Environmental Health Sciences; National Institute of Allergy and Infectious Diseases; National Institute of Mental Health; National Institute for Health and Care Research; National Institute on Aging; Department of Health and Social Care; Medical Research Council; National Institutes of Health; RWTH Aachen University; Economic and Social Research Council; University College London Hospitals NHS Foundation Trust; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Alzheimer’s Research UK; Cancer Research UK; Biotechnology and Biological Sciences Research Council; ZonMw; Joint Programming Initiative A healthy diet for a healthy life; Deutsche Krebshilfe; National Natural Science Foundation of China; National Cancer Institute; University of Bristol; Deutsche Forschungsgemeinschaft; Diabetes UK; Bundesministerium für Bildung und Forschung; National Science Foundation; UCLH Biomedical Research Centre; American Association for Cancer Research","keywords":"Biology; Epigenomics; DNA methylation; Epigenetics; Human genetics; Evolutionary biology; Computational biology; Longevity; Biomarker; Molecular clock; Population; Genetics; CpG site; Gene; Gene expression; Demography","authors":[{"name":"Christopher G. Bell","is_ca":false},{"name":"Robert Lowe","is_ca":false},{"name":"Peter D. Adams","is_ca":false},{"name":"Andrea Baccarelli","is_ca":false},{"name":"Stephan Beck","is_ca":false},{"name":"Jordana T. Bell","is_ca":false},{"name":"Brock C. Christensen","is_ca":false},{"name":"Vadim N. Gladyshev","is_ca":false},{"name":"Bastiaan T. Heijmans","is_ca":false},{"name":"Steve Horvath","is_ca":false},{"name":"Trey Ideker","is_ca":false},{"name":"Jean‐Pierre J. Issa","is_ca":false},{"name":"Karl T. Kelsey","is_ca":false},{"name":"Riccardo E. Marioni","is_ca":false},{"name":"Wolf Reik","is_ca":false},{"name":"Caroline L. Relton","is_ca":false},{"name":"Leonard C. Schalkwyk","is_ca":false},{"name":"Andrew E. Teschendorff","is_ca":false},{"name":"Wolfgang Wagner","is_ca":false},{"name":"Kang Zhang","is_ca":false},{"name":"Vardhman K. Rakyan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0875488202517343,"gpt":0.3625280585721039,"spread":0.2749792383203696,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006909284,0.001279356,0.002548076,0.002341524,0.0007339865,0.003153894,0.00353847,0.006379347,0.007773729],"category_scores_gemma":[0.01099395,0.0004732927,0.001191826,0.001729773,0.002259276,0.007540448,0.002275105,0.009520723,0.007000255],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002155741,"about_ca_system_score_gemma":0.005616257,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002984283,"about_ca_topic_score_gemma":0.004601558,"domain_scores_codex":[0.9986262,0.0003981406,0.0002015076,0.0002813952,0.0003813939,0.0001112292],"domain_scores_gemma":[0.9904912,0.005053862,0.0004908624,0.0002621859,0.003021262,0.0006807925],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008078812,0.00006174064,0.0002362375,0.01161799,0.00007623254,0.0003048705,0.0002300805,0.0004135464,0.0006937897,0.02347926,0.2539321,0.7088734],"study_design_scores_gemma":[0.00001085893,0.00003509492,0.0002314975,0.00459011,0.00004222466,0.0004060912,0.0001652223,0.00008287538,0.0001284895,0.01479144,0.979488,0.00002807634],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00007830114,0.9468912,0.0009325101,0.04314745,0.006786472,0.00001450034,0.00008829076,0.00007000392,0.001991289],"genre_scores_gemma":[0.00105449,0.9738884,0.002035224,0.01406287,0.005026068,0.0000537984,0.0001387154,0.00002294855,0.003717581],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.007773729,"threshold_uncertainty_score":0.03654021,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1982315838","doi":"10.1016/s1097-2765(02)00741-4","title":"MLL Targets SET Domain Methyltransferase Activity to Hox Gene Promoters","year":2002,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1054,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Heart, Lung, and Blood Institute","keywords":"Biology; Hox gene; Histone methyltransferase; Histone H3; Regulation of gene expression; Histone; Genetics; Histone methylation; DNA methylation; Gene; Promoter; Gene expression; Molecular biology","authors":[{"name":"Thomas A. Milne","is_ca":true},{"name":"Scott Briggs","is_ca":false},{"name":"Hugh W. Brock","is_ca":true},{"name":"Mary Ellen Martin","is_ca":false},{"name":"Denise Gibbs","is_ca":false},{"name":"C. David Allis","is_ca":false},{"name":"Jay L. Hess","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0116939321585763,"gpt":0.2323722370282718,"spread":0.2206783048696954,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001995302,0.000401434,0.0003565307,0.0004196887,0.0003551973,0.0006844061,0.00058589,0.0004488946,0.004838301],"category_scores_gemma":[0.0004237179,0.0004660159,0.0003627382,0.0001993017,0.0004270302,0.0004093751,0.0008757372,0.001273393,0.00237547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001049433,"about_ca_system_score_gemma":0.0002394742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007990638,"about_ca_topic_score_gemma":0.002534263,"domain_scores_codex":[0.9997514,0.00003428621,0.00001245613,0.0000531589,0.00008506516,0.00006351673],"domain_scores_gemma":[0.9997687,0.00007158978,0.00004884774,0.00003353877,0.00002456001,0.00005273135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009300638,0.00001230849,0.0003393346,0.00002805625,0.000005495957,0.00003888888,0.00001315739,0.0001296559,0.9960389,0.000426481,0.0001485218,0.002726191],"study_design_scores_gemma":[0.000007514387,0.00003152697,0.001620301,0.000002753606,0.000003582888,0.00005696935,0.00001177881,0.0006008094,0.9958884,0.0001046088,0.001668977,0.000002739326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9409162,0.006264661,0.03631455,0.0009681549,0.0001937078,0.00005440818,0.001269958,0.001515873,0.01250231],"genre_scores_gemma":[0.9848341,0.0006281948,0.00516983,0.0001801704,0.00003021374,0.00003145003,0.0009085646,0.0001269806,0.008090639],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004838301,"threshold_uncertainty_score":0.0161857,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2129915465","doi":"10.1186/s13059-014-0503-2","title":"Functional normalization of 450k methylation array data improves replication in large cancer studies","year":2014,"lang":"en","type":"article","venue":"Genome biology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1009,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Jewish General Hospital; University of Toronto; Ontario Institute for Cancer Research; Ottawa Hospital; McGill University; Douglas Mental Health University Institute","funders":"National Institute of Dental and Craniofacial Research; National Institute of General Medical Sciences; National Cancer Institute","keywords":"Biology; Human genetics; Methylation; Computational biology; Normalization (sociology); Replication (statistics); DNA methylation; Genetics; Cancer; Epigenetics; Bioinformatics; Evolutionary biology; Gene; Gene expression","authors":[{"name":"Jean-Philippe Fortin","is_ca":false},{"name":"Aurélie Labbe","is_ca":true},{"name":"Mathieu Lemire","is_ca":true},{"name":"Brent W. Zanke","is_ca":true},{"name":"Thomas J. Hudson","is_ca":true},{"name":"Elana J. Fertig","is_ca":false},{"name":"Celia M.T. Greenwood","is_ca":true},{"name":"Kasper D. Hansen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05226886351996257,"gpt":0.3455371985945553,"spread":0.2932683350745928,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03472117,0.002180062,0.002452578,0.001804016,0.00169482,0.002729076,0.003888545,0.001594785,0.004137018],"category_scores_gemma":[0.07938382,0.001223688,0.002651091,0.00293819,0.001615427,0.001869211,0.002526741,0.002504718,0.002430285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001583764,"about_ca_system_score_gemma":0.003224763,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004476216,"about_ca_topic_score_gemma":0.006494478,"domain_scores_codex":[0.9772378,0.01074775,0.001166041,0.006448178,0.003786616,0.0006137646],"domain_scores_gemma":[0.9612088,0.01458678,0.001774205,0.01561197,0.006502027,0.0003161984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001756986,0.0004116746,0.05147066,0.001264206,0.00242543,0.0003034424,0.000816074,0.06683218,0.203552,0.01815604,0.01431163,0.6386997],"study_design_scores_gemma":[0.0004223712,0.000691087,0.07908569,0.0001796566,0.001289821,0.0009725341,0.00026023,0.5142033,0.2811881,0.06461499,0.05658609,0.000506131],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.01467965,0.0003485337,0.9783903,0.0002800737,0.0001749448,0.0001895894,0.0008569959,0.004204075,0.000875902],"genre_scores_gemma":[0.1475371,0.0002844632,0.8413305,0.0005015893,0.0001665378,0.001230745,0.003948719,0.002933255,0.002067134],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.03472117,"threshold_uncertainty_score":0.1836253,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2074750860","doi":"10.1038/nn.3786","title":"Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci","year":2014,"lang":"en","type":"article","venue":"Nature Neuroscience","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1006,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Institute of Environmental Health Sciences; National Institute of Neurological Disorders and Stroke; National Human Genome Research Institute; National Institute on Aging","keywords":"CpG site; DNA methylation; Methylation; Biology; Gene; Genetics; Gene expression","authors":[{"name":"Philip L. De Jager","is_ca":false},{"name":"Gyan Srivastava","is_ca":false},{"name":"Katie Lunnon","is_ca":false},{"name":"Jeremy D. Burgess","is_ca":false},{"name":"Leonard C. Schalkwyk","is_ca":false},{"name":"Lei Yu","is_ca":false},{"name":"Matthew L. Eaton","is_ca":false},{"name":"Brendan T Keenan","is_ca":false},{"name":"Jason Ernst","is_ca":false},{"name":"Cristin McCabe","is_ca":false},{"name":"Anna Tang","is_ca":false},{"name":"Towfique Raj","is_ca":false},{"name":"Joseph M. Replogle","is_ca":false},{"name":"Wendy Brodeur","is_ca":false},{"name":"Stacey Gabriel","is_ca":false},{"name":"High Seng Chai","is_ca":false},{"name":"Curtis Younkin","is_ca":false},{"name":"Steven G. Younkin","is_ca":false},{"name":"Fanggeng Zou","is_ca":false},{"name":"Moshe Szyf","is_ca":true},{"name":"Julie A. Schneider","is_ca":false},{"name":"B Bernstein","is_ca":false},{"name":"Alex Meissner","is_ca":false},{"name":"Nilüfer Ertekin‐Taner","is_ca":false},{"name":"Lori B. Chibnik","is_ca":false},{"name":"Manolis Kellis","is_ca":false},{"name":"Jonathan Mill","is_ca":false},{"name":"David A. Bennett","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01172674519452725,"gpt":0.2809473099680377,"spread":0.2692205647735104,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001395215,0.0003118633,0.0002928265,0.0005230453,0.0002092022,0.0002245664,0.0001784419,0.0002515923,0.002152857],"category_scores_gemma":[0.0001793971,0.0001932771,0.0001521469,0.000276522,0.0002073789,0.0002054593,0.0002433173,0.0003921016,0.0002536468],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002490793,"about_ca_system_score_gemma":0.0001852461,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00201223,"about_ca_topic_score_gemma":0.00323958,"domain_scores_codex":[0.9999342,0.000006443938,0.000004703178,0.00001979712,0.00001591078,0.00001907316],"domain_scores_gemma":[0.9999093,0.0000106099,0.00003294226,0.000008376072,0.00001451817,0.00002424784],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00152383,0.00004418516,0.01078454,0.00007901858,0.00005016901,0.0006121065,0.000099426,0.00008463812,0.9777233,0.0001758353,0.0002293957,0.008593577],"study_design_scores_gemma":[0.00004183865,0.0002866718,0.6275984,0.00002138475,0.00009490333,0.004542545,0.000212139,0.0003232924,0.3635518,0.000824251,0.002479924,0.00002292214],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928815,0.002890721,0.00176452,0.0001116136,0.0000299474,0.00001058058,0.0007656695,0.00008789129,0.001457528],"genre_scores_gemma":[0.9957094,0.0005794725,0.0009167223,0.00003917009,0.000008188345,0.00001109224,0.0004388941,0.00001647502,0.002280595],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002152857,"threshold_uncertainty_score":0.007202029,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2053758959","doi":"10.1016/j.molcel.2010.12.011","title":"Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq","year":2010,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":983,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Ministry of Education, Science and Technology; Howard Hughes Medical Institute","keywords":"PRC2; Biology; Polycomb-group proteins; Genetics; Transcriptome; Genome; Gene; RNA; Computational biology; Chromatin; Histone H3; Gene expression; Repressor","authors":[{"name":"Jing Zhao","is_ca":false},{"name":"Toshiro K. Ohsumi","is_ca":false},{"name":"Johnny T. Kung","is_ca":false},{"name":"Yuya Ogawa","is_ca":false},{"name":"Daniel Grau","is_ca":false},{"name":"Kavitha Sarma","is_ca":false},{"name":"Ji Joon Song","is_ca":false},{"name":"Robert E. Kingston","is_ca":false},{"name":"Mark L. Borowsky","is_ca":false},{"name":"Jeannie T. Lee","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003292284781495733,"gpt":0.2106623298510377,"spread":0.207370045069542,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000455115,0.0003382874,0.0006459986,0.0005286522,0.0004311325,0.0007460788,0.0005541898,0.0003626386,0.001981609],"category_scores_gemma":[0.0004690994,0.0003018524,0.0006656586,0.0005214474,0.0003596423,0.0002423061,0.0004963478,0.001066834,0.0012054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002397794,"about_ca_system_score_gemma":0.0003509341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001244139,"about_ca_topic_score_gemma":0.00678129,"domain_scores_codex":[0.9996264,0.00003027537,0.00001672106,0.0001554308,0.0001136506,0.00005754742],"domain_scores_gemma":[0.9997333,0.00008397099,0.00003031805,0.00004515911,0.00006647354,0.00004082164],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009900647,0.00001255799,0.001076623,0.00006588143,0.00004212609,0.00003789868,0.00002678068,0.000174578,0.9947051,0.0001641947,0.0002462912,0.003348996],"study_design_scores_gemma":[0.00008996343,0.0001601328,0.09651831,0.0000183184,0.0002821662,0.0005186978,0.0001543097,0.01473257,0.870407,0.0008553555,0.01620637,0.00005686241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8061498,0.003015805,0.1441369,0.0004217227,0.0002063253,0.0004476461,0.03125856,0.00151413,0.01284914],"genre_scores_gemma":[0.8265939,0.001042542,0.1216461,0.0008672774,0.00008758574,0.000362721,0.03864044,0.0008697287,0.009889618],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001981609,"threshold_uncertainty_score":0.006629169,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146794662","doi":"10.1186/gb-2014-15-2-r24","title":"Aging of blood can be tracked by DNA methylation changes at just three CpG sites","year":2014,"lang":"en","type":"article","venue":"Genome biology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":958,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Heinz Nixdorf Stiftung; RWTH Aachen University; Stem Cell Network","keywords":"Biology; DNA methylation; CpG site; Human genetics; Genome Biology; Evolutionary biology; Methylation; DNA; Computational biology; Genetics; Ancient DNA; Genomics; Genome; Gene; Demography; Gene expression; Population","authors":[{"name":"Carola I. Weidner","is_ca":false},{"name":"Qiong Lin","is_ca":false},{"name":"Carmen Koch","is_ca":false},{"name":"Lewin Eisele","is_ca":false},{"name":"Fabian Beier","is_ca":false},{"name":"Patrick Ziegler","is_ca":false},{"name":"Dirk Bauerschlag","is_ca":false},{"name":"Karl‐Heinz Jöckel","is_ca":false},{"name":"Raimund Erbel","is_ca":false},{"name":"Thomas W. Mühleisen","is_ca":false},{"name":"Martin Zenke","is_ca":false},{"name":"Tim H. Brümmendorf","is_ca":false},{"name":"Wolfgang Wagner","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02237749524620415,"gpt":0.2612908318895717,"spread":0.2389133366433676,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003751389,0.0002591753,0.0001895207,0.0005863592,0.0001059596,0.000252257,0.000171948,0.0002849542,0.001068335],"category_scores_gemma":[0.0007338455,0.0001254354,0.0001827778,0.0003873505,0.0002122493,0.0001990956,0.0001934386,0.0002548997,0.0003478233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001255398,"about_ca_system_score_gemma":0.0001085525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005137248,"about_ca_topic_score_gemma":0.0007828403,"domain_scores_codex":[0.9998448,0.00002592958,0.00001176777,0.00006174279,0.00004003601,0.00001562624],"domain_scores_gemma":[0.9995729,0.0001218502,0.0001603272,0.00005475572,0.00006268609,0.00002755526],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003027385,0.0000313816,0.0680977,0.0001299019,0.00008755562,0.00007874405,0.00009576375,0.0004788245,0.8966736,0.0001834794,0.0001546405,0.03368573],"study_design_scores_gemma":[0.00001120463,0.0006285062,0.5063179,0.00003558506,0.0002270239,0.001221802,0.00009260137,0.003397821,0.4825825,0.0009691773,0.004485832,0.00002999473],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9600852,0.004411594,0.03087768,0.00009221546,0.00003407965,0.00003549643,0.0023192,0.0002140351,0.001930498],"genre_scores_gemma":[0.9875081,0.00110779,0.009377188,0.00008657908,0.00001682795,0.0000309553,0.001116932,0.00002102823,0.0007345472],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001068335,"threshold_uncertainty_score":0.003573895,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062927905","doi":"10.1038/nature11262","title":"A selective jumonji H3K27 demethylase inhibitor modulates the proinflammatory macrophage response","year":2012,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":958,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Cancer Institute; Canadian Institutes of Health Research; Versus Arthritis; Wellcome Trust","keywords":"Demethylase; Subfamily; Epigenetics; Histone; Biology; Chromatin; Proinflammatory cytokine; Context (archaeology); Small molecule; Biochemistry; Cell biology; Inflammation; Gene","authors":[{"name":"Laurens Kruidenier","is_ca":false},{"name":"Chun‐wa Chung","is_ca":false},{"name":"Zhongjun Cheng","is_ca":false},{"name":"John Liddle","is_ca":false},{"name":"KaHing Che","is_ca":false},{"name":"Gérard Joberty","is_ca":false},{"name":"Marcus Bantscheff","is_ca":false},{"name":"C. Bountra","is_ca":false},{"name":"Angela Bridges","is_ca":false},{"name":"Hawa Diallo","is_ca":false},{"name":"Dirk Eberhard","is_ca":false},{"name":"Sue Hutchinson","is_ca":false},{"name":"Emma J. Jones","is_ca":false},{"name":"Roy Katso","is_ca":false},{"name":"Melanie Leveridge","is_ca":false},{"name":"Palwinder K. Mander","is_ca":false},{"name":"J. Mosley","is_ca":false},{"name":"César Ramírez-Molina","is_ca":false},{"name":"Paul Rowland","is_ca":false},{"name":"Christopher J. Schofield","is_ca":false},{"name":"Robert J. Sheppard","is_ca":false},{"name":"Julia E. Smith","is_ca":false},{"name":"Catherine Swales","is_ca":false},{"name":"Robert D. Tanner","is_ca":false},{"name":"Pamela J. Thomas","is_ca":false},{"name":"Anthony Tumber","is_ca":false},{"name":"Gerard Drewes","is_ca":false},{"name":"Udo Oppermann","is_ca":false},{"name":"Dinshaw J. Patel","is_ca":false},{"name":"Kevin Lee","is_ca":false},{"name":"David M. Wilson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005100822089425351,"gpt":0.2542507990759661,"spread":0.2491499769865408,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002349276,0.0002183149,0.0003006149,0.0001403238,0.0002150316,0.00019761,0.0003164278,0.0002346089,0.002206407],"category_scores_gemma":[0.0001613926,0.0001636235,0.0001811737,0.0001152413,0.0002708146,0.0001724944,0.0001804807,0.0006646218,0.0002982697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002701797,"about_ca_system_score_gemma":0.000370103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006610309,"about_ca_topic_score_gemma":0.002255186,"domain_scores_codex":[0.9999087,0.00001497185,0.00000603141,0.00001496477,0.0000152959,0.0000400038],"domain_scores_gemma":[0.9999344,0.00001192853,0.00001332047,0.00001007717,0.000006310305,0.00002385546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001392366,0.00007003178,0.0001797347,0.00005730673,0.00001687048,0.00004686379,0.00001181812,0.000119012,0.9935487,0.0002223179,0.0003009501,0.004034094],"study_design_scores_gemma":[0.000147838,0.0007510099,0.003148831,0.000007582966,0.00004599909,0.0001476753,0.00003519635,0.0007124744,0.9910813,0.0001433159,0.003771908,0.000006905384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861186,0.00532733,0.002951817,0.000499131,0.000162125,0.0000374132,0.0003737427,0.0001490183,0.004380811],"genre_scores_gemma":[0.9945287,0.001696181,0.001039102,0.0001317743,0.00003319585,0.00002655562,0.0001830457,0.00002068801,0.002340686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002206407,"threshold_uncertainty_score":0.007381201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2150170782","doi":"10.1038/ng.465","title":"SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas","year":2009,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":952,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Princess Margaret Cancer Centre; University Health Network","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health","keywords":"Biology; Cancer research; SOX2; Ectopic expression; Esophagus; Oncogene; Cellular differentiation; Transcription factor; Cell; Cell culture; Gene; Genetics; Cell cycle","authors":[{"name":"Adam J. Bass","is_ca":false},{"name":"Hideo Watanabe","is_ca":false},{"name":"Craig H. Mermel","is_ca":false},{"name":"Soyoung Yu","is_ca":false},{"name":"Sven Perner","is_ca":false},{"name":"Roel G.W. Verhaak","is_ca":false},{"name":"So Young Kim","is_ca":false},{"name":"Leslie Wardwell","is_ca":false},{"name":"Pablo Tamayo","is_ca":false},{"name":"Irit Gat‐Viks","is_ca":false},{"name":"Alex H. Ramos","is_ca":false},{"name":"Michele Sue‐Ann Woo","is_ca":false},{"name":"Barbara A. Weir","is_ca":false},{"name":"Gad Getz","is_ca":false},{"name":"Rameen Beroukhim","is_ca":false},{"name":"Michael O'Kelly","is_ca":false},{"name":"Amit Dutt","is_ca":false},{"name":"Orit Rozenblatt–Rosen","is_ca":false},{"name":"Piotr Dziunycz","is_ca":false},{"name":"Justin Komisarof","is_ca":false},{"name":"Lucian R. Chirieac","is_ca":false},{"name":"Christopher J. Lafargue","is_ca":false},{"name":"Veit Scheble","is_ca":false},{"name":"Theresia Wilbertz","is_ca":false},{"name":"Changqing Ma","is_ca":false},{"name":"Shilpa Rao","is_ca":false},{"name":"Hiroshi Nakagawa","is_ca":false},{"name":"Douglas B. Stairs","is_ca":false},{"name":"Lin Lin","is_ca":false},{"name":"Thomas J. Giordano","is_ca":false},{"name":"Patrick Wagner","is_ca":false},{"name":"John D. Minna","is_ca":false},{"name":"Adi F. Gazdar","is_ca":false},{"name":"Chang‐Qi Zhu","is_ca":true},{"name":"Marcia S. Brose","is_ca":false},{"name":"Ivan Cecconello","is_ca":false},{"name":"Ulysses Ribeiro","is_ca":false},{"name":"Suely Kazue Nagahashi Marie","is_ca":false},{"name":"Olav Dahl","is_ca":false},{"name":"Ramesh A. Shivdasani","is_ca":false},{"name":"Ming‐Sound Tsao","is_ca":true},{"name":"Mark A. Rubin","is_ca":false},{"name":"Kwok‐Kin Wong","is_ca":false},{"name":"Aviv Regev","is_ca":false},{"name":"William C. Hahn","is_ca":false},{"name":"David G. Beer","is_ca":false},{"name":"Anil K. Rustgi","is_ca":false},{"name":"Matthew Meyerson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01017174342488764,"gpt":0.2744493561528173,"spread":0.2642776127279297,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002247099,0.0001877525,0.0001926646,0.0006232353,0.0002254768,0.0003724555,0.0001687454,0.0001895135,0.001770756],"category_scores_gemma":[0.0002784899,0.0002036626,0.000145986,0.0003321993,0.0002603226,0.0002137991,0.0002524066,0.0002011487,0.0002717302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002586187,"about_ca_system_score_gemma":0.0002107313,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001509754,"about_ca_topic_score_gemma":0.002036782,"domain_scores_codex":[0.999873,0.00001771734,0.00001340105,0.00001813241,0.00005203116,0.000025683],"domain_scores_gemma":[0.9998292,0.00003706621,0.0000303634,0.00001890824,0.00003048475,0.00005396137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004817455,0.00002065023,0.02304403,0.00003455543,0.00002192287,0.001125833,0.00007883187,0.00008619217,0.9719059,0.0003508044,0.00009110222,0.002758503],"study_design_scores_gemma":[0.00006879975,0.0002288527,0.4202235,0.00001254694,0.0001010618,0.008213668,0.000477446,0.001975829,0.5634789,0.0005119753,0.004693127,0.00001424543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969274,0.0007760239,0.0006713397,0.00004463023,0.000009533275,0.000006811319,0.0001267132,0.00002099329,0.001416582],"genre_scores_gemma":[0.9976187,0.0002473999,0.0002795474,0.000009924473,0.000007084697,0.000004948619,0.0001959384,0.000006795389,0.001629619],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001770756,"threshold_uncertainty_score":0.005923808,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2036284273","doi":"10.1111/acel.12349","title":"<scp>DNA</scp> methylation and healthy human aging","year":2015,"lang":"en","type":"review","venue":"Aging Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":947,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Learning Partnership; Child and Family Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research; Child and Family Research Institute; Canadian Institute for Advanced Research","keywords":"Epigenetics; DNA methylation; Biology; Epigenome; CpG site; Genetics; Methylation; Telomere; Epigenomics; Epigenetics of physical exercise; Senescence; Gene; Gene expression","authors":[{"name":"Meaghan J. Jones","is_ca":true},{"name":"Sarah J. Goodman","is_ca":true},{"name":"Michael S. Kobor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04676490933599096,"gpt":0.3534713865845835,"spread":0.3067064772485926,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000703621,0.0006660923,0.001110811,0.0007716126,0.0004889847,0.001107249,0.001163287,0.002016681,0.01117171],"category_scores_gemma":[0.00123514,0.0001827044,0.0003262075,0.001902052,0.001557759,0.001058284,0.0009325822,0.002372889,0.00399294],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001021774,"about_ca_system_score_gemma":0.001284004,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004177088,"about_ca_topic_score_gemma":0.005102715,"domain_scores_codex":[0.9995578,0.000113943,0.00005094336,0.00008355329,0.0001633217,0.0000303264],"domain_scores_gemma":[0.9992515,0.0003049157,0.00008745165,0.0000419033,0.0002520399,0.00006210495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001837048,0.00004589533,0.001058844,0.0116261,0.0001541799,0.001314713,0.0003580068,0.001259619,0.01752998,0.03341583,0.3761331,0.5569199],"study_design_scores_gemma":[0.000008122598,0.00007987153,0.00396999,0.001069808,0.0000322937,0.001089793,0.00006895516,0.0001941127,0.00276423,0.01287855,0.977824,0.00002020742],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0017188,0.9295106,0.002024376,0.03115643,0.01338805,0.00004505067,0.001008904,0.0001700888,0.02097776],"genre_scores_gemma":[0.01545342,0.9305251,0.001944573,0.01258486,0.01504431,0.0001223462,0.001301747,0.00004538672,0.02297822],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01117171,"threshold_uncertainty_score":0.03737307,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981259598","doi":"10.1016/j.cell.2007.10.039","title":"New Nomenclature for Chromatin-Modifying Enzymes","year":2007,"lang":"en","type":"letter","venue":"Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":937,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Biology; Acetyltransferases; Chromatin; Histone Acetyltransferases; Methyltransferase; Lysine; Enzyme; Biochemistry; Genetics; Histone; Nomenclature; Computational biology; Acetylation; DNA; Methylation; Gene; Ecology; Amino acid; Taxonomy (biology)","authors":[{"name":"C. David Allis","is_ca":false},{"name":"Shelley L. Berger","is_ca":false},{"name":"Jacques Côté","is_ca":true},{"name":"Sharon Dent","is_ca":false},{"name":"Thomas Jenuwien","is_ca":false},{"name":"Tony Kouzarides","is_ca":false},{"name":"Lorraine Pillus","is_ca":false},{"name":"Danny Reinberg","is_ca":false},{"name":"Yang Shi","is_ca":false},{"name":"Ramin Shiekhattar","is_ca":false},{"name":"Ali Shilatifard","is_ca":false},{"name":"Jerry L. Workman","is_ca":false},{"name":"Yi Zhang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0165519727382418,"gpt":0.2660670371208258,"spread":0.249515064382584,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003582639,0.001676319,0.002003182,0.00140554,0.001558155,0.00240173,0.003490566,0.0107954,0.004003796],"category_scores_gemma":[0.006484336,0.001063728,0.001223716,0.001802237,0.005703676,0.006192951,0.001890575,0.02553855,0.005505229],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002697417,"about_ca_system_score_gemma":0.001633877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008870584,"about_ca_topic_score_gemma":0.002336037,"domain_scores_codex":[0.9978476,0.0005967444,0.000395239,0.000342073,0.0005849777,0.0002333271],"domain_scores_gemma":[0.9973955,0.001126011,0.0002815654,0.0003921448,0.0005360705,0.0002686672],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002186468,0.00008822401,0.0002015833,0.0005832533,0.00004580207,0.001671014,0.000246544,0.0003369436,0.008331171,0.1381658,0.7593777,0.09073341],"study_design_scores_gemma":[0.00007931692,0.00005856355,0.0001468737,0.00007817098,0.00002448581,0.001558578,0.00004193131,0.0004510879,0.002647087,0.04398394,0.9508905,0.00003934321],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.002113836,0.1360615,0.06859054,0.4077269,0.3616044,0.000104991,0.0005460154,0.001076024,0.02217578],"genre_scores_gemma":[0.02876756,0.1017173,0.0981885,0.4713041,0.2226915,0.0009441088,0.001009626,0.0006862553,0.07469095],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.0107954,"threshold_uncertainty_score":0.01957124,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113833115","doi":"10.1038/nature04835","title":"ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression","year":2006,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":927,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"H3K4me3; Histone H3; Histone; Effector; Biology; Cell biology; Histone methylation; Chromatin; Histone deacetylase 2; Chromatin immunoprecipitation; Histone code; Promoter; Chemistry; Genetics; Histone deacetylase; DNA methylation; Gene; Gene expression; Nucleosome","authors":[{"name":"Xiaobing Shi","is_ca":false},{"name":"Tao Hong","is_ca":false},{"name":"Kay L. Walter","is_ca":false},{"name":"Mark D. Ewalt","is_ca":false},{"name":"Eriko Michishita","is_ca":false},{"name":"Tiffany Hung","is_ca":false},{"name":"Dylan Carney","is_ca":false},{"name":"Pedro V. Peña","is_ca":false},{"name":"Fei Lan","is_ca":false},{"name":"Mohan R. Kaadige","is_ca":false},{"name":"Nicolas Lacoste","is_ca":true},{"name":"Christelle Cayrou","is_ca":true},{"name":"Foteini Davrazou","is_ca":false},{"name":"Anjanabha Saha","is_ca":false},{"name":"Bradley R. Cairns","is_ca":false},{"name":"Donald E. Ayer","is_ca":false},{"name":"Tatiana G. Kutateladze","is_ca":false},{"name":"Yang Shi","is_ca":false},{"name":"Jacques Côté","is_ca":true},{"name":"Katrin F. Chua","is_ca":false},{"name":"Or Gozani","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006637168087479237,"gpt":0.2857316571902206,"spread":0.2790944891027414,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002006597,0.0003443924,0.0002652781,0.0002024081,0.0003868218,0.0006597554,0.0007866308,0.0004008414,0.004812339],"category_scores_gemma":[0.000218618,0.0003146923,0.0002856059,0.0001729729,0.000415177,0.0003614701,0.0005990801,0.000836531,0.001350741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006057922,"about_ca_system_score_gemma":0.0003568165,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001695837,"about_ca_topic_score_gemma":0.002481259,"domain_scores_codex":[0.9998885,0.000008749551,0.000004489516,0.00003343921,0.00002678867,0.00003785995],"domain_scores_gemma":[0.9998857,0.00001416612,0.00002086524,0.00002208522,0.00001483191,0.00004237586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004606585,0.00004119023,0.0006750196,0.00005298532,0.0000132867,0.0001647961,0.00001955022,0.0003145844,0.9913966,0.00133581,0.0008530594,0.004672542],"study_design_scores_gemma":[0.00001647855,0.00004450091,0.00533549,0.000002342721,0.00001056066,0.0002064815,0.00002379351,0.001708629,0.986912,0.0004583593,0.005274715,0.000006720126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9520081,0.003048002,0.02342577,0.0009150496,0.0002851806,0.00003981889,0.001314132,0.0009970837,0.0179669],"genre_scores_gemma":[0.9817061,0.0005331436,0.002848305,0.0001671829,0.00003761381,0.00001552014,0.001167012,0.00006864551,0.01345651],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004812339,"threshold_uncertainty_score":0.01609886,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2013245174","doi":"10.1523/jneurosci.3652-05.2005","title":"Reversal of Maternal Programming of Stress Responses in Adult Offspring through Methyl Supplementation: Altering Epigenetic Marking Later in Life","year":2005,"lang":"en","type":"article","venue":"Journal of Neuroscience","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":902,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Douglas Mental Health University Institute; Douglas College","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Offspring; Epigenetics; Psychology; Developmental psychology; Biology; Pregnancy; Genetics; Gene","authors":[{"name":"Ian C.G. Weaver","is_ca":true},{"name":"Frances A. Champagne","is_ca":true},{"name":"Shelley E. Brown","is_ca":true},{"name":"Sergiy Dymov","is_ca":true},{"name":"Shakti Sharma","is_ca":true},{"name":"Michael J. Meaney","is_ca":true},{"name":"Moshe Szyf","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02472442163877084,"gpt":0.3136909905470572,"spread":0.2889665689082863,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009288215,0.000296759,0.0002084484,0.0001120304,0.00009834958,0.0001560983,0.0002087294,0.0002284024,0.0009176732],"category_scores_gemma":[0.0001667669,0.0001110371,0.0001180607,0.00005067897,0.0002927324,0.0001246016,0.0001725444,0.0004954651,0.000132175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001447828,"about_ca_system_score_gemma":0.000208824,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003974985,"about_ca_topic_score_gemma":0.001312986,"domain_scores_codex":[0.9999273,0.00001250432,0.000005114377,0.00002253687,0.00001413925,0.00001836172],"domain_scores_gemma":[0.9998072,0.00002049088,0.00007906122,0.00003016849,0.0000170591,0.00004611561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004966951,0.00003768843,0.0008050007,0.00002295881,0.000008179919,0.0000872454,0.00003736943,0.00002232242,0.9948357,0.00008870572,0.00002009425,0.003538121],"study_design_scores_gemma":[0.00004662662,0.002369106,0.02076197,0.00001247474,0.00003908967,0.0002583947,0.00007977669,0.0002259304,0.9748214,0.0001216019,0.001256317,0.000007341832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984657,0.0003022985,0.0007871663,0.00005259251,0.00001194086,0.000005072613,0.00007704653,0.00003769177,0.0002605526],"genre_scores_gemma":[0.9963845,0.0004203015,0.001440774,0.00004994416,0.000008033335,0.00001962528,0.0001166216,0.00001449976,0.00154564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009176732,"threshold_uncertainty_score":0.003069937,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016923091","doi":"10.1038/nature12362","title":"Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells","year":2013,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":882,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Cancer Agency","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; National Cancer Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"DNA demethylation; DNA methylation; Epigenetics; Biology; Molecular biology; 5-Hydroxymethylcytosine; Demethylation; Methylation; Chemistry; DNA; Gene; Gene expression; Biochemistry","authors":[{"name":"Kathryn Blaschke","is_ca":false},{"name":"Kevin Ebata","is_ca":false},{"name":"Mohammad M. Karimi","is_ca":true},{"name":"Jorge A. Zepeda-Martínez","is_ca":false},{"name":"Preeti Goyal","is_ca":true},{"name":"Sahasransu Mahapatra","is_ca":false},{"name":"Angela Tam","is_ca":true},{"name":"Diana J. Laird","is_ca":false},{"name":"Martin Hirst","is_ca":true},{"name":"Anjana Rao","is_ca":false},{"name":"Matthew C. Lorincz","is_ca":true},{"name":"Miguel Ramalho‐Santos","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00455691203124772,"gpt":0.2320055858160686,"spread":0.2274486737848209,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000322914,0.0002623159,0.0003801702,0.0005572546,0.0002747238,0.0004324261,0.0003800552,0.0004215623,0.002008604],"category_scores_gemma":[0.0003626502,0.0002805879,0.0003568048,0.0002669023,0.0003599852,0.0002113099,0.0003478263,0.000707004,0.0005408035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006000497,"about_ca_system_score_gemma":0.0003562633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0022056,"about_ca_topic_score_gemma":0.003238156,"domain_scores_codex":[0.9997793,0.00004398233,0.00003531984,0.00005117985,0.00005165712,0.00003863678],"domain_scores_gemma":[0.9996104,0.0001318716,0.00004785427,0.000098199,0.00004999931,0.00006167965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001883755,0.00001007068,0.0001398264,0.00002179246,0.00001036891,0.00007292135,0.00001986933,0.00003868143,0.9983988,0.0001492179,0.00005045375,0.0008995418],"study_design_scores_gemma":[0.00001203994,0.0000500112,0.002045681,0.000003247453,0.00001014316,0.00008862132,0.00001370683,0.0001203033,0.9961191,0.00005319768,0.001480731,0.000003281074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9791883,0.003939007,0.007288609,0.0003176299,0.0001030327,0.00006913525,0.00201725,0.0004508311,0.00662615],"genre_scores_gemma":[0.986286,0.0008010938,0.00217972,0.00008950377,0.00001397487,0.0000308519,0.001415476,0.00008609629,0.009097319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0022056,"threshold_uncertainty_score":0.00671947,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2010711123","doi":"10.1016/j.ccr.2013.04.011","title":"EZH2 Is Required for Germinal Center Formation and Somatic EZH2 Mutations Promote Lymphoid Transformation","year":2013,"lang":"en","type":"article","venue":"Cancer Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":841,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"National Cancer Institute","keywords":"EZH2; Germinal center; Histone methyltransferase; Biology; Somatic cell; Somatic hypermutation; B cell; Chromatin; Cancer research; Gene silencing; Histone; Genetics; Gene","authors":[{"name":"Wendy Béguelin","is_ca":false},{"name":"Relja Popovic","is_ca":false},{"name":"Matt Teater","is_ca":false},{"name":"Yanwen Jiang","is_ca":false},{"name":"Karen Bunting","is_ca":false},{"name":"Monica W. Rosen","is_ca":false},{"name":"Hao Shen","is_ca":false},{"name":"Shao Ning Yang","is_ca":false},{"name":"Ling Wang","is_ca":false},{"name":"Teresa Ezponda","is_ca":false},{"name":"Eva Martínez-García","is_ca":false},{"name":"Haikuo Zhang","is_ca":false},{"name":"Yupeng Zheng","is_ca":false},{"name":"Sharad K. Verma","is_ca":false},{"name":"Michael T. McCabe","is_ca":false},{"name":"Heidi M. Ott","is_ca":false},{"name":"Glenn S. Van Aller","is_ca":false},{"name":"Ryan G. Kruger","is_ca":false},{"name":"Yan Liu","is_ca":false},{"name":"Charles F. McHugh","is_ca":false},{"name":"David W. Scott","is_ca":true},{"name":"Young Rock Chung","is_ca":false},{"name":"Neil L. Kelleher","is_ca":false},{"name":"Rita Shaknovich","is_ca":false},{"name":"Caretha L. Creasy","is_ca":false},{"name":"Randy D. Gascoyne","is_ca":true},{"name":"Kwok‐Kin Wong","is_ca":false},{"name":"Leandro Cerchietti","is_ca":false},{"name":"Ross L. Levine","is_ca":false},{"name":"Omar Abdel‐Wahab","is_ca":false},{"name":"Jonathan D. Licht","is_ca":false},{"name":"Olivier Elemento","is_ca":false},{"name":"Ari Melnick","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01273970078456645,"gpt":0.2634424101023659,"spread":0.2507027093177994,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001437766,0.0002903618,0.0002218733,0.0003256022,0.0002665381,0.0004773801,0.000257847,0.0002997072,0.002483607],"category_scores_gemma":[0.0001988761,0.0002858718,0.0002003461,0.0002011992,0.0003387636,0.0002569974,0.0005099698,0.0006413485,0.0006427826],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004466201,"about_ca_system_score_gemma":0.0001993363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006566319,"about_ca_topic_score_gemma":0.001738053,"domain_scores_codex":[0.9998164,0.00002330088,0.00001669207,0.00002715625,0.00005632688,0.00006012422],"domain_scores_gemma":[0.9998409,0.00002928471,0.00003920316,0.00002648329,0.00001188616,0.00005226876],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001419287,0.00001436241,0.0004876184,0.000008624941,0.000004989638,0.0001056742,0.000006665906,0.00005896011,0.998384,0.0002421966,0.00005575554,0.0004891097],"study_design_scores_gemma":[0.00001955588,0.00004033947,0.00843659,0.000001352422,0.00001093825,0.0004575634,0.00002970814,0.0006087192,0.9882442,0.0001012374,0.002046729,0.000003029046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940811,0.0008292426,0.002333847,0.0001575054,0.00003421327,0.00001103611,0.0002792354,0.0001578008,0.002116042],"genre_scores_gemma":[0.9971842,0.0001287445,0.0004881603,0.00002790407,0.000006658022,0.00000728126,0.0002543806,0.00003006699,0.001872658],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002483607,"threshold_uncertainty_score":0.00830847,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2099562966","doi":"10.1016/s0140-6736(13)62674-4","title":"DNA methylation and body-mass index: a genome-wide analysis","year":2014,"lang":"en","type":"article","venue":"The Lancet","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":793,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Public Health Ontario","funders":"Helmholtz Zentrum München; Fondation pour la Recherche Médicale; Bundesministerium für Bildung und Forschung; European Commission; King's College London; Canadian Institutes of Health Research; National Institute for Health and Care Research; British Heart Foundation; Wellcome Trust; NIHR BioResource; Heart and Stroke Foundation of Canada","keywords":"DNA methylation; Methylation; Cohort; Body mass index; Epigenetics; CpG site; Genetics; Genome-wide association study; Genetic association; Biology; Oncology; Medicine; Internal medicine; Gene; Genotype; Single-nucleotide polymorphism; Gene expression","authors":[{"name":"Katherine Dick","is_ca":false},{"name":"Christopher P. Nelson","is_ca":false},{"name":"Loukia Tsaprouni","is_ca":false},{"name":"Johanna K. Sandling","is_ca":false},{"name":"Dylan Aïssi","is_ca":false},{"name":"Simone Wahl","is_ca":false},{"name":"Eshwar Meduri","is_ca":false},{"name":"Pierre‐Emmanuel Morange","is_ca":false},{"name":"France Gagnon","is_ca":true},{"name":"Harald Grallert","is_ca":false},{"name":"Mélanie Waldenberger","is_ca":false},{"name":"Annette Peters","is_ca":false},{"name":"Jeanette Erdmann","is_ca":false},{"name":"Christian Hengstenberg","is_ca":false},{"name":"François Cambien","is_ca":false},{"name":"Alison H. Goodall","is_ca":false},{"name":"Willem H. Ouwehand","is_ca":false},{"name":"Heribert Schunkert","is_ca":false},{"name":"John R. Thompson","is_ca":false},{"name":"Tim D. Spector","is_ca":false},{"name":"Christian Gieger","is_ca":false},{"name":"David‐Alexandre Trégouët","is_ca":false},{"name":"Panos Deloukas","is_ca":false},{"name":"Nilesh J. Samani","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01223471946487438,"gpt":0.2553138061754293,"spread":0.2430790867105549,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008284541,0.0004790632,0.0005966844,0.0007079678,0.000283392,0.0004798181,0.0004934432,0.0005458944,0.001935974],"category_scores_gemma":[0.001142049,0.0003671612,0.001281591,0.001984103,0.0002218925,0.0002327241,0.0005078031,0.0006750973,0.0002216534],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000268414,"about_ca_system_score_gemma":0.0003390276,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00757447,"about_ca_topic_score_gemma":0.01257798,"domain_scores_codex":[0.9995614,0.0001407209,0.0000203688,0.0001589835,0.00006349981,0.00005499645],"domain_scores_gemma":[0.99953,0.0001720345,0.00008297931,0.00005975749,0.00005821132,0.00009705011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001623947,0.00002998284,0.9751413,0.00009159859,0.003721033,0.000273441,0.0001191491,0.0002354803,0.005304436,0.0001149647,0.001087142,0.01225751],"study_design_scores_gemma":[0.00002843936,0.00008508112,0.9974312,0.000006753221,0.0009488688,0.0002389502,0.00005023785,0.0002143624,0.0002011644,0.00007635537,0.000712114,0.000006418791],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867088,0.005857076,0.001401504,0.0007715843,0.00004621286,0.00001633893,0.004356761,0.00003560148,0.0008061556],"genre_scores_gemma":[0.9958279,0.001149928,0.0007913868,0.0001798833,0.00005664733,0.00001345099,0.001329047,0.00001236857,0.0006395255],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00757447,"threshold_uncertainty_score":0.01506078,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2505539351","doi":"10.1186/s13059-016-1030-0","title":"An epigenetic clock analysis of race/ethnicity, sex, and coronary heart disease","year":2016,"lang":"en","type":"article","venue":"Genome biology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":789,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"National Center for Advancing Translational Sciences; National Institute of Environmental Health Sciences; National Institute of Allergy and Infectious Diseases; National Institute on Aging; University at Buffalo; MedStar Health Research Institute; Wake Forest University; University of Pittsburgh; U.S. Department of Health and Human Services; National Institutes of Health; Ohio State University; National Heart, Lung, and Blood Institute; Brigham and Women's Hospital; National Cancer Institute","keywords":"Epigenetics; Demography; Biology; Mortality rate; Disease; Physiology; Ethnic group; Life expectancy; Medicine; Gerontology; Internal medicine; Genetics; Population; Gene","authors":[{"name":"Steve Horvath","is_ca":false},{"name":"Michael Gurven","is_ca":false},{"name":"Morgan E. Levine","is_ca":false},{"name":"Benjamin C. Trumble","is_ca":false},{"name":"Hillard Kaplan","is_ca":false},{"name":"Hooman Allayee","is_ca":false},{"name":"Beate Ritz","is_ca":false},{"name":"Brian Chen","is_ca":false},{"name":"Ake T. Lu","is_ca":false},{"name":"Tammy M. Rickabaugh","is_ca":false},{"name":"Beth D. Jamieson","is_ca":false},{"name":"Dianjianyi Sun","is_ca":false},{"name":"Shengxu Li","is_ca":false},{"name":"Wei Chen","is_ca":false},{"name":"Lluís Quintana‐Murci","is_ca":false},{"name":"Maud Fagny","is_ca":false},{"name":"Michael S. Kobor","is_ca":true},{"name":"Philip S. Tsao","is_ca":false},{"name":"Alex P. Reiner","is_ca":false},{"name":"Kerstin L. Edlefsen","is_ca":false},{"name":"Devin Absher","is_ca":false},{"name":"Themistocles L. Assimes","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01204599034083154,"gpt":0.2815035904373481,"spread":0.2694576000965165,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005121222,0.0001298109,0.0001411978,0.0004398337,0.0002434983,0.0003298039,0.0001612368,0.0001303175,0.001706972],"category_scores_gemma":[0.001074257,0.00006943537,0.0001996621,0.0004593477,0.0001497908,0.0001386001,0.0002316283,0.0001595347,0.0001107197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001185578,"about_ca_system_score_gemma":0.0002508512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002297238,"about_ca_topic_score_gemma":0.003852638,"domain_scores_codex":[0.9998531,0.00004769037,0.000009316254,0.00004636053,0.00002076198,0.00002274841],"domain_scores_gemma":[0.9996062,0.00008332243,0.0001382135,0.00004379872,0.00007994934,0.00004852179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003685998,0.00004998126,0.9639161,0.00003222696,0.0001702962,0.00006305716,0.0002934838,0.0001227798,0.02090407,0.0002952008,0.0002855332,0.01349865],"study_design_scores_gemma":[0.000003283287,0.00008967624,0.9962522,0.000004251119,0.00006207528,0.00008638608,0.0001706713,0.0005102021,0.002173924,0.0001401098,0.0005040468,0.000003234843],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961686,0.0002594937,0.001760345,0.00007326088,0.00001500263,0.00001602219,0.0008893408,0.00001731804,0.0008005976],"genre_scores_gemma":[0.9979125,0.00006346892,0.001287014,0.0000429905,0.000007437027,0.00002310221,0.0002632154,0.000005679925,0.0003945638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002297238,"threshold_uncertainty_score":0.005710363,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2553059833","doi":"10.1016/j.cell.2016.10.026","title":"Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells","year":2016,"lang":"en","type":"article","venue":"Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":779,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Instituto de Salud Carlos III; Medical Research Council; Canadian Institutes of Health Research; Max-Planck-Gesellschaft; Lundbeckfonden; Ministerio de Economía y Competitividad; NIHR Cambridge Biomedical Research Centre; European Commission; University of Cambridge; European Molecular Biology Laboratory; University of Oxford; NHS Blood and Transplant; McGill University; European Bioinformatics Institute; National Institute for Health and Care Research; Genome Canada; British Heart Foundation; Wellcome Trust","keywords":"Biology; Epigenetics; Quantitative trait locus; DNA methylation; Expression quantitative trait loci; Epigenome; Genetics; Genome-wide association study; Epigenomics; Allele; Histone; Genetic variation; Computational biology; Gene; Gene expression; Genotype; Single-nucleotide polymorphism","authors":[{"name":"Lu Chen","is_ca":false},{"name":"Bing Ge","is_ca":true},{"name":"Francesco Paolo Casale","is_ca":false},{"name":"Louella Vasquez","is_ca":false},{"name":"Tony Kwan","is_ca":true},{"name":"Diego Garrido-Martín","is_ca":false},{"name":"Stephen Watt","is_ca":false},{"name":"Yan Yan","is_ca":false},{"name":"Kousik Kundu","is_ca":false},{"name":"Simone Ecker","is_ca":false},{"name":"Avik Datta","is_ca":false},{"name":"David Richardson","is_ca":false},{"name":"Frances Burden","is_ca":false},{"name":"Daniel G. Mead","is_ca":false},{"name":"Alice Mann","is_ca":false},{"name":"José M. Fernández","is_ca":false},{"name":"Sophia Rowlston","is_ca":false},{"name":"Steven P. Wilder","is_ca":false},{"name":"Samantha Farrow","is_ca":false},{"name":"Xiaojian Shao","is_ca":true},{"name":"John Lambourne","is_ca":true},{"name":"Adriana Redensek","is_ca":true},{"name":"Cornelis A. Albers","is_ca":false},{"name":"Vyacheslav Amstislavskiy","is_ca":false},{"name":"Sofie Ashford","is_ca":false},{"name":"Kim Berentsen","is_ca":false},{"name":"Lorenzo Bomba","is_ca":false},{"name":"Guillaume Bourque","is_ca":true},{"name":"David Bujold","is_ca":true},{"name":"Stephan Busche","is_ca":true},{"name":"Maxime Caron","is_ca":true},{"name":"Shu‐Huang Chen","is_ca":true},{"name":"Warren Cheung","is_ca":true},{"name":"Emmanouil T. Dermitzakis","is_ca":false},{"name":"Heather Elding","is_ca":false},{"name":"Irina Colgiu","is_ca":false},{"name":"Frederik Otzen Bagger","is_ca":false},{"name":"Paul Flicek","is_ca":false},{"name":"Ehsan Habibi","is_ca":false},{"name":"Valentina Iotchkova","is_ca":false},{"name":"Eva M. Janssen‐Megens","is_ca":false},{"name":"Bowon Kim","is_ca":false},{"name":"Hans Lehrach","is_ca":false},{"name":"Ernesto Lowy","is_ca":false},{"name":"Amit Mandoli","is_ca":false},{"name":"Filomena Matarese","is_ca":false},{"name":"Matthew T. Maurano","is_ca":false},{"name":"John Morris","is_ca":true},{"name":"Véra Pancaldi","is_ca":false},{"name":"Farzin Pourfarzad","is_ca":false},{"name":"Karola Rehnström","is_ca":false},{"name":"Augusto Rendon","is_ca":false},{"name":"Thomas S. Risch","is_ca":false},{"name":"Nilofar Sharifi","is_ca":false},{"name":"Marie-Michelle Simon","is_ca":true},{"name":"Marc Sultan","is_ca":false},{"name":"Alfonso Valencia","is_ca":false},{"name":"Klaudia Walter","is_ca":false},{"name":"Shuang-Yin Wang","is_ca":false},{"name":"Mattia Frontini","is_ca":false},{"name":"Stylianos E. Antonarakis","is_ca":false},{"name":"Laura Clarke","is_ca":false},{"name":"Marie‐Laure Yaspo","is_ca":false},{"name":"Stephan Beck","is_ca":false},{"name":"Roderic Guigó","is_ca":false},{"name":"Daniel Rico","is_ca":false},{"name":"Joost H.A. Martens","is_ca":false},{"name":"Willem H. Ouwehand","is_ca":false},{"name":"Taco W. Kuijpers","is_ca":false},{"name":"Dirk S. Paul","is_ca":false},{"name":"Hendrik G. Stunnenberg","is_ca":false},{"name":"Oliver Stegle","is_ca":false},{"name":"Kate Downes","is_ca":false},{"name":"Tomi Pastinen","is_ca":true},{"name":"Nicole Soranzo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006209911734211974,"gpt":0.2096002954075117,"spread":0.2033903836732998,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000120927,0.00007111482,0.0001383613,0.0004464909,0.0002028983,0.0002180609,0.000107064,0.000125097,0.002624299],"category_scores_gemma":[0.0002825548,0.00008756001,0.0001010295,0.0005493378,0.0001245265,0.000058613,0.0002205904,0.0001702306,0.0003652437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001219606,"about_ca_system_score_gemma":0.0001008037,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008026126,"about_ca_topic_score_gemma":0.001959396,"domain_scores_codex":[0.9998806,0.00002057648,0.000007542208,0.00004111712,0.00002940658,0.0000207643],"domain_scores_gemma":[0.9999022,0.0000273646,0.00002145919,0.00001886088,0.00001318926,0.00001683459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001142053,0.0001121076,0.2243541,0.0001168451,0.0002363487,0.0008000525,0.0004170642,0.0009484834,0.7229938,0.001547665,0.001009754,0.04632181],"study_design_scores_gemma":[0.00003690423,0.0002677296,0.9109816,0.0000160309,0.0001429871,0.002757671,0.000277802,0.0009602068,0.07299353,0.001036183,0.01051432,0.00001512046],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944873,0.0004267537,0.001641203,0.00003535566,0.000007361571,0.00001565884,0.001868804,0.00001876907,0.001498842],"genre_scores_gemma":[0.9958209,0.0002214062,0.000779932,0.00003353494,0.000008026051,0.00002354771,0.001625481,0.00001037753,0.001476795],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002624299,"threshold_uncertainty_score":0.008779168,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121471393","doi":"10.1016/j.ajhg.2008.01.008","title":"Epigenomic Profiling Reveals DNA-Methylation Changes Associated with Major Psychosis","year":2008,"lang":"en","type":"article","venue":"The American Journal of Human Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":776,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Centre for Addiction and Mental Health","funders":"National Institute of Mental Health","keywords":"Epigenomics; DNA methylation; Psychosis; Profiling (computer programming); Computational biology; Biology; Genetics; Medicine; Psychiatry; Computer science; Gene; Gene expression","authors":[{"name":"Jonathan Mill","is_ca":true},{"name":"Thomas Tang","is_ca":true},{"name":"Zachary Kaminsky","is_ca":true},{"name":"Tarang Khare","is_ca":true},{"name":"Simin Yazdanpanah","is_ca":true},{"name":"Luigi Bouchard","is_ca":true},{"name":"Peixin Jia","is_ca":true},{"name":"Abbas Assadzadeh","is_ca":true},{"name":"James M. Flanagan","is_ca":true},{"name":"Axel Schumacher","is_ca":true},{"name":"Sun-Chong Wang","is_ca":true},{"name":"Artūras Petronis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02233375735204721,"gpt":0.2790641784117239,"spread":0.2567304210596766,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007191909,0.0001694894,0.0002109532,0.0006416368,0.0002341168,0.0002419545,0.0001410324,0.0001869217,0.001986876],"category_scores_gemma":[0.0003032236,0.0001392545,0.0001486846,0.0003245909,0.0001842158,0.0001064245,0.0002715499,0.0002713576,0.0001667073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001417614,"about_ca_system_score_gemma":0.0001086513,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001213135,"about_ca_topic_score_gemma":0.001804527,"domain_scores_codex":[0.9999281,0.00001020169,0.000004193757,0.00001844773,0.00001379156,0.00002519133],"domain_scores_gemma":[0.9998696,0.00002790857,0.00003950901,0.00001216162,0.00001409615,0.00003684637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001911411,0.00004756375,0.05909835,0.00003807369,0.00006143848,0.0008871448,0.000169464,0.00008106136,0.9313332,0.0001549832,0.0001325256,0.006084768],"study_design_scores_gemma":[0.00001575856,0.0002558378,0.9385138,0.000004765283,0.00004653536,0.00223698,0.0002277942,0.0003017141,0.05767729,0.0002894075,0.0004209473,0.000009073387],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987206,0.0001392419,0.0003047516,0.00004042128,0.000003076853,0.000004126278,0.000292739,0.000009895161,0.0004849885],"genre_scores_gemma":[0.9990233,0.0001027728,0.0001483269,0.00002014712,0.000003040255,0.000005606478,0.0002228328,0.000004144102,0.000469686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001986876,"threshold_uncertainty_score":0.006646693,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2173367702","doi":"10.1038/ncomms9570","title":"The transcriptional landscape of age in human peripheral blood","year":2015,"lang":"en","type":"review","venue":"Nature Communications","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":760,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Discovery Centre","funders":"National Center for Advancing Translational Sciences; National Institute on Aging; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; European Commission; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; National Institute for Health and Care Research","keywords":"Transcriptome; Epigenetics; DNA methylation; CpG site; Ageing; Biology; Methylation; Gene; Gene expression; Genetics; Regulation of gene expression; Computational biology; Bioinformatics","authors":[{"name":"Marjolein J. Peters","is_ca":false},{"name":"Roby Joehanes","is_ca":false},{"name":"Luke C. Pilling","is_ca":false},{"name":"Claudia Schurmann","is_ca":false},{"name":"Karen N. Conneely","is_ca":false},{"name":"Joseph E. Powell","is_ca":false},{"name":"Eva Reinmaa","is_ca":false},{"name":"George L. Sutphin","is_ca":false},{"name":"Alexandra Zhernakova","is_ca":false},{"name":"Katharina Schramm","is_ca":false},{"name":"Yana A. Wilson","is_ca":false},{"name":"Sayuko Kobes","is_ca":false},{"name":"Taru Tukiainen","is_ca":false},{"name":"Michael A. Nalls","is_ca":false},{"name":"Dena Hernández","is_ca":false},{"name":"Mark Cookson","is_ca":false},{"name":"J. Raphael Gibbs","is_ca":false},{"name":"John Hardy","is_ca":false},{"name":"Adaikalavan Ramasamy","is_ca":false},{"name":"Alan B. Zonderman","is_ca":false},{"name":"Allissa Dillman","is_ca":false},{"name":"Bryan J. Traynor","is_ca":false},{"name":"Colin Smith","is_ca":false},{"name":"Dan L. Longo","is_ca":false},{"name":"Daniah Trabzuni","is_ca":false},{"name":"Juan C. Troncoso","is_ca":false},{"name":"Marcel van der Brug","is_ca":true},{"name":"Michael E. Weale","is_ca":false},{"name":"Richard M. O’Brien","is_ca":false},{"name":"Robert Johnson","is_ca":false},{"name":"Robert Walker","is_ca":false},{"name":"Ronald H. Zielke","is_ca":false},{"name":"Sampath Arepalli","is_ca":false},{"name":"Mina Ryten","is_ca":false},{"name":"Andrew Singleton","is_ca":false},{"name":"Y.F. Ramos","is_ca":false},{"name":"Harald H.H. Göring","is_ca":false},{"name":"Myriam Fornage","is_ca":false},{"name":"Ching‐Ti Liu","is_ca":false},{"name":"Sina A. Gharib","is_ca":false},{"name":"Barbara E. Stranger","is_ca":false},{"name":"Philip L. De Jager","is_ca":false},{"name":"Abraham Aviv","is_ca":false},{"name":"Daniel Levy","is_ca":false},{"name":"Joanne M. Murabito","is_ca":false},{"name":"Peter J. Munson","is_ca":false},{"name":"Tianxiao Huan","is_ca":false},{"name":"Albert Hofman","is_ca":false},{"name":"André G. Uitterlinden","is_ca":false},{"name":"Fernando Rivadeneira","is_ca":false},{"name":"Jeroen van Rooij","is_ca":false},{"name":"Lisette Stolk","is_ca":false},{"name":"Linda Broer","is_ca":false},{"name":"Michaël Verbiest","is_ca":false},{"name":"Mila Jhamai","is_ca":false},{"name":"Pascal Arp","is_ca":false},{"name":"Andres Metspalu","is_ca":false},{"name":"Liina Tserel","is_ca":false},{"name":"Lili Milani","is_ca":false},{"name":"Nilesh J. Samani","is_ca":false},{"name":"Pärt Peterson","is_ca":false},{"name":"Silva Kasela","is_ca":false},{"name":"Veryan Codd","is_ca":false},{"name":"Annette Peters","is_ca":false},{"name":"Cavin Ward‐Caviness","is_ca":false},{"name":"Christian Herder","is_ca":false},{"name":"Mélanie Waldenberger","is_ca":false},{"name":"Michael Roden","is_ca":false},{"name":"Paula Singmann","is_ca":false},{"name":"Sonja Zeilinger","is_ca":false},{"name":"Thomas Illig","is_ca":false},{"name":"Georg Homuth","is_ca":false},{"name":"Hans J. Grabe","is_ca":false},{"name":"Henry Völzke","is_ca":false},{"name":"Leif Steil","is_ca":false},{"name":"Thomas Kocher","is_ca":false},{"name":"Anna Murray","is_ca":false},{"name":"David Melzer","is_ca":false},{"name":"Hanieh Yaghootkar","is_ca":false},{"name":"Stefania Bandinelli","is_ca":false},{"name":"Eric K. Moses","is_ca":false},{"name":"Jack W. Kent","is_ca":false},{"name":"Joanne E. Curran","is_ca":false},{"name":"Matthew P. Johnson","is_ca":false},{"name":"Sarah Williams‐Blangero","is_ca":false},{"name":"Harm-Jan Westra","is_ca":false},{"name":"Allan F. McRae","is_ca":false},{"name":"Jennifer A. Smith","is_ca":false},{"name":"Sharon L. R. Kardia","is_ca":false},{"name":"Iiris Hovatta","is_ca":false},{"name":"Markus Perola","is_ca":false},{"name":"Samuli Ripatti","is_ca":false},{"name":"Veikko Salomaa","is_ca":false},{"name":"Anjali K. Henders","is_ca":false},{"name":"Nicholas G. Martin","is_ca":false},{"name":"Alicia K. Smith","is_ca":false},{"name":"Divya Mehta","is_ca":false},{"name":"Elisabeth B. Binder","is_ca":false},{"name":"K. Maria Nylocks","is_ca":false},{"name":"Elizabeth M. Kennedy","is_ca":false},{"name":"Torsten Klengel","is_ca":false},{"name":"Jingzhong Ding","is_ca":false},{"name":"Astrid M. Suchy‐Dicey","is_ca":false},{"name":"Daniel A. Enquobahrie","is_ca":false},{"name":"Jennifer A. Brody","is_ca":false},{"name":"Jerome I. Rotter","is_ca":false},{"name":"Yii‐Der Ida Chen","is_ca":false},{"name":"Jeanine J. Houwing‐Duistermaat","is_ca":false},{"name":"M. Kloppenburg","is_ca":false},{"name":"P. Eline Slagboom","is_ca":false},{"name":"Quinta Helmer","is_ca":false},{"name":"Wouter den Hollander","is_ca":false},{"name":"Shannon Bean","is_ca":false},{"name":"Towfique Raj","is_ca":false},{"name":"Noman Bakhshi","is_ca":false},{"name":"Qiao‐Ping Wang","is_ca":false},{"name":"Lisa J. Oyston","is_ca":false},{"name":"Bruce M. Psaty","is_ca":false},{"name":"Russell P. Tracy","is_ca":false},{"name":"Grant W. Montgomery","is_ca":false},{"name":"Stephen T. Turner","is_ca":false},{"name":"John Blangero","is_ca":false},{"name":"Ingrid Meulenbelt","is_ca":false},{"name":"Kerry J. Ressler","is_ca":false},{"name":"Jian Yang","is_ca":false},{"name":"Lude Franke","is_ca":false},{"name":"Johannes Kettunen","is_ca":false},{"name":"Peter M. Visscher","is_ca":false},{"name":"G. Gregory Neely","is_ca":false},{"name":"Ron Korstanje","is_ca":false},{"name":"Robert L. Hanson","is_ca":false},{"name":"Holger Prokisch","is_ca":false},{"name":"Luigi Ferrucci","is_ca":false},{"name":"Tõnu Esko","is_ca":false},{"name":"Alexander Teumer","is_ca":false},{"name":"Joyce B. J. van Meurs","is_ca":false},{"name":"Andrew D. Johnson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04821631296329774,"gpt":0.371852450536134,"spread":0.3236361375728362,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006442281,0.0004101262,0.0008787048,0.0007422472,0.0001124211,0.0006447914,0.0004774714,0.0006186049,0.0006054219],"category_scores_gemma":[0.0006597979,0.000189965,0.0004979444,0.0009967098,0.0003468247,0.0005006834,0.0003777499,0.0005427579,0.0004530684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004422518,"about_ca_system_score_gemma":0.0005045184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001291931,"about_ca_topic_score_gemma":0.001460003,"domain_scores_codex":[0.9998216,0.00005043327,0.00001357348,0.000068157,0.00003223041,0.00001403554],"domain_scores_gemma":[0.9998065,0.00008980797,0.00004627545,0.00001163803,0.00003391977,0.00001187855],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0002836069,0.00002134231,0.01629043,0.007711858,0.0007733661,0.0002529851,0.0001812265,0.001566358,0.01250135,0.003756524,0.007361282,0.9492997],"study_design_scores_gemma":[0.00007249486,0.0005483962,0.2002774,0.003750284,0.002812447,0.005746762,0.0003788063,0.00222843,0.01342336,0.01809173,0.7524771,0.0001927945],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004160359,0.9927276,0.00145456,0.0005025208,0.00009990337,0.000005931581,0.0002657305,0.0000195332,0.0007638655],"genre_scores_gemma":[0.03919216,0.9570754,0.001579157,0.0005877301,0.0002595756,0.0000230022,0.000426744,0.000009118816,0.0008470924],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001291931,"threshold_uncertainty_score":0.003407001,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109715726","doi":"10.1038/nbt.1682","title":"Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications","year":2010,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":739,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; National Cancer Institute; National Institute of General Medical Sciences; National Institute on Drug Abuse; National Institute of Environmental Health Sciences; University of Waterloo","keywords":"Methylated DNA immunoprecipitation; Bisulfite sequencing; Illumina Methylation Assay; DNA methylation; Biology; Epigenetics; CpG site; Genomic imprinting; Genetics; Computational biology; DNA sequencing; Differentially methylated regions; Deep sequencing; Genome; Gene; Gene expression","authors":[{"name":"R. Alan Harris","is_ca":false},{"name":"Ting Wang","is_ca":false},{"name":"Cristian Coarfa","is_ca":false},{"name":"Raman P. Nagarajan","is_ca":false},{"name":"Chibo Hong","is_ca":false},{"name":"Sara L. Downey","is_ca":false},{"name":"Brett Johnson","is_ca":false},{"name":"Shaun D. Fouse","is_ca":false},{"name":"Allen Delaney","is_ca":true},{"name":"Yongjun Zhao","is_ca":true},{"name":"Adam B. Olshen","is_ca":false},{"name":"Tracy Ballinger","is_ca":false},{"name":"Xin Zhou","is_ca":false},{"name":"Kevin J. Forsberg","is_ca":false},{"name":"Junchen Gu","is_ca":false},{"name":"Lorigail Echipare","is_ca":false},{"name":"Henriette O’Geen","is_ca":false},{"name":"Ryan Lister","is_ca":false},{"name":"Mattia Pelizzola","is_ca":false},{"name":"Yuanxin Xi","is_ca":false},{"name":"B Bernstein","is_ca":false},{"name":"R. David Hawkins","is_ca":false},{"name":"Bing Ren","is_ca":false},{"name":"Wen‐Yu Chung","is_ca":false},{"name":"Hongcang Gu","is_ca":false},{"name":"Christoph Bock","is_ca":false},{"name":"Andreas Gnirke","is_ca":false},{"name":"Michael Q. Zhang","is_ca":false},{"name":"David Haussler","is_ca":false},{"name":"Joseph R. Ecker","is_ca":false},{"name":"Wei Li","is_ca":false},{"name":"Peggy Farnham","is_ca":false},{"name":"Robert A. Waterland","is_ca":false},{"name":"Alexander Meissner","is_ca":false},{"name":"Marco A. Marra","is_ca":true},{"name":"Martin Hirst","is_ca":true},{"name":"Aleksandar Milosavljevic","is_ca":false},{"name":"J Costello","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01877695010311142,"gpt":0.3687117673703512,"spread":0.3499348172672398,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008671271,0.001271485,0.001168736,0.002739898,0.000513242,0.001427287,0.001375565,0.001422239,0.001113156],"category_scores_gemma":[0.01132577,0.0008329021,0.001129411,0.001301984,0.0007215095,0.0007173602,0.0009366299,0.001674066,0.0006910573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007153811,"about_ca_system_score_gemma":0.000776982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001989499,"about_ca_topic_score_gemma":0.005058477,"domain_scores_codex":[0.9944261,0.001753004,0.0003498704,0.0008826664,0.002293088,0.0002952136],"domain_scores_gemma":[0.986774,0.007975234,0.0009587088,0.0009789056,0.002901089,0.0004121572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00249652,0.0003994211,0.01326378,0.0008435688,0.001111082,0.00006927918,0.0004772994,0.003676458,0.911878,0.001146418,0.0004840673,0.06415407],"study_design_scores_gemma":[0.0001491553,0.00211396,0.0793928,0.00008863746,0.001188015,0.001165966,0.0002954729,0.05485335,0.8526736,0.001647696,0.006233769,0.000197584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.6326418,0.009675214,0.3467446,0.0005411057,0.0003404165,0.0006364073,0.00281836,0.001061687,0.005540425],"genre_scores_gemma":[0.5887054,0.007112059,0.3897553,0.0008221089,0.000129653,0.0009843011,0.006385422,0.0004789133,0.005626902],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.008671271,"threshold_uncertainty_score":0.04585862,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2136691282","doi":"10.1371/journal.pgen.1002629","title":"Epigenome-Wide Scans Identify Differentially Methylated Regions for Age and Age-Related Phenotypes in a Healthy Ageing Population","year":2012,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":718,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland","funders":"Wellcome Trust","keywords":"Differentially methylated regions; Biology; DNA methylation; Epigenome; Epigenetics; Methylation; CpG site; Genetics; Longevity; Ageing; Phenotype; Genome-wide association study; Genotype; Gene; Single-nucleotide polymorphism; Gene expression","authors":[{"name":"Jordana T. Bell","is_ca":false},{"name":"Pei-Chien Tsai","is_ca":false},{"name":"Tsun-Po Yang","is_ca":false},{"name":"Ruth Pidsley","is_ca":false},{"name":"James Nisbet","is_ca":false},{"name":"Daniel Glass","is_ca":false},{"name":"Massimo Mangino","is_ca":false},{"name":"Guangju Zhai","is_ca":true},{"name":"Feng Zhang","is_ca":false},{"name":"Ana M. Valdes","is_ca":false},{"name":"So–Youn Shin","is_ca":false},{"name":"Emma Dempster","is_ca":false},{"name":"Robin Murray","is_ca":false},{"name":"Elin Grundberg","is_ca":false},{"name":"Åsa K. Hedman","is_ca":false},{"name":"Alexandra Nica","is_ca":false},{"name":"Kerrin S. Small","is_ca":false},{"name":"Emmanouil T. Dermitzakis","is_ca":false},{"name":"Mark I. McCarthy","is_ca":false},{"name":"Jonathan Mill","is_ca":false},{"name":"Tim D. Spector","is_ca":false},{"name":"Panos Deloukas","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03064955705384771,"gpt":0.2963573792235284,"spread":0.2657078221696807,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006974486,0.0002037426,0.0002943677,0.0006959617,0.000265353,0.0002728699,0.0002286254,0.0003692487,0.001578532],"category_scores_gemma":[0.002017992,0.0001488439,0.0004494817,0.0006376681,0.000168248,0.0001600297,0.0004030471,0.00026719,0.0001182379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001108807,"about_ca_system_score_gemma":0.0001364796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003561203,"about_ca_topic_score_gemma":0.006852515,"domain_scores_codex":[0.9995388,0.0001052185,0.00003548584,0.0002211031,0.00005390769,0.00004558267],"domain_scores_gemma":[0.9993616,0.0002114099,0.0001828084,0.000106535,0.00006872002,0.00006902887],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007089663,0.0000464063,0.9113494,0.00006657521,0.001292421,0.0003113677,0.0002839891,0.0004216058,0.07140511,0.0001556478,0.0003827951,0.0135758],"study_design_scores_gemma":[0.000009327518,0.0000594086,0.997885,0.000002878696,0.0001254824,0.0002172972,0.0000412568,0.0002273647,0.0009732014,0.00007292721,0.0003823002,0.000003440702],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972547,0.0004071787,0.001156932,0.00003371107,0.000004054603,0.00000900967,0.000843471,0.00001910477,0.0002718389],"genre_scores_gemma":[0.9978495,0.000141146,0.0009684556,0.00004519661,0.000005957404,0.0000140269,0.0006601803,0.000007257891,0.0003084766],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003561203,"threshold_uncertainty_score":0.007080913,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069200751","doi":"10.1016/s1097-2765(03)00091-1","title":"The Paf1 Complex Is Required for Histone H3 Methylation by COMPASS and Dot1p: Linking Transcriptional Elongation to Histone Methylation","year":2003,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":713,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Cancer Institute","keywords":"Biology; Histone methylation; Histone methyltransferase; Histone code; Histone H3; Histone; EZH2; Compass; Methylation; Histone H2A; Cell biology; Genetics; DNA methylation; Nucleosome; DNA; Gene expression; Gene","authors":[{"name":"Nevan J. Krogan","is_ca":true},{"name":"Jim Dover","is_ca":false},{"name":"Adam Wood","is_ca":false},{"name":"Jessica Schneider","is_ca":false},{"name":"Jonathan Heidt","is_ca":false},{"name":"Marry Ann Boateng","is_ca":false},{"name":"Kimberly Dean","is_ca":false},{"name":"Owen Ryan","is_ca":true},{"name":"Ashkan Golshani","is_ca":true},{"name":"Mark Johnston","is_ca":false},{"name":"Jack Greenblatt","is_ca":true},{"name":"Ali Shilatifard","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02069138108277099,"gpt":0.290317183190774,"spread":0.2696258021080031,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000235478,0.0007320588,0.0005225544,0.0003457509,0.0007440375,0.001265244,0.0006841561,0.0008066994,0.002519537],"category_scores_gemma":[0.0004966368,0.0009342791,0.0003651859,0.0002286414,0.0006504602,0.001051267,0.0009633679,0.001326846,0.002198234],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001137346,"about_ca_system_score_gemma":0.000359114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001680974,"about_ca_topic_score_gemma":0.002752271,"domain_scores_codex":[0.9997479,0.00001956865,0.00001762026,0.00008358321,0.00006257121,0.0000686971],"domain_scores_gemma":[0.9994729,0.00007740861,0.0001020771,0.0001057264,0.00005383453,0.0001879771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002339812,0.00001801721,0.0005159252,0.0000223745,0.00000495764,0.0001139427,0.00002067459,0.00004643326,0.9975376,0.0003310567,0.0001024174,0.001052527],"study_design_scores_gemma":[0.00001930338,0.00003078805,0.006398888,0.000003262743,0.000005307989,0.0003182369,0.00003144725,0.001064935,0.9895928,0.0001825927,0.002344534,0.000007867228],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9835472,0.00315214,0.00974518,0.0006128519,0.0001335749,0.00002209211,0.000435629,0.0004297436,0.00192174],"genre_scores_gemma":[0.9881146,0.0004869754,0.004095091,0.000121788,0.00003037886,0.00002770362,0.001472814,0.0001966469,0.005453895],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002519537,"threshold_uncertainty_score":0.008428752,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2008978345","doi":"10.1038/nature09230","title":"Epigenetics as a unifying principle in the aetiology of complex traits and diseases","year":2010,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":693,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre for Addiction and Mental Health","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Human Genome Research Institute; National Institute of Mental Health; Canadian Institutes of Health Research","keywords":"Epigenetics; Germline; Biology; Phenotype; Histone; Epigenesis; Somatic cell; Genetics; DNA methylation; Heritability; Epigenetic regulation of neurogenesis; Evolutionary biology; Computational biology; DNA; Gene; Gene expression; Chromatin remodeling","authors":[{"name":"Artūras Petronis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01066196089556333,"gpt":0.3034593601017241,"spread":0.2927973992061608,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009055673,0.0002818214,0.0007246099,0.0004587224,0.0003936627,0.001135083,0.0006876067,0.0010969,0.001210113],"category_scores_gemma":[0.001143522,0.0002704755,0.0002549473,0.0004441111,0.002371108,0.001537374,0.0009161989,0.001017546,0.0001933698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000579639,"about_ca_system_score_gemma":0.0007309309,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008036799,"about_ca_topic_score_gemma":0.0008989859,"domain_scores_codex":[0.9996171,0.00008379693,0.00002379898,0.0001102374,0.0001204406,0.00004452638],"domain_scores_gemma":[0.9996049,0.0001792956,0.00008497737,0.00005685037,0.00003419691,0.00003986241],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.000794624,0.0001259192,0.05183533,0.001350263,0.0004565175,0.002726735,0.001332244,0.006964453,0.288619,0.3776056,0.005771133,0.2624182],"study_design_scores_gemma":[0.000127779,0.0005012595,0.1125901,0.0003849447,0.0003491871,0.005832045,0.0008643584,0.01028116,0.06001096,0.6984426,0.1104319,0.0001839568],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4548799,0.3299631,0.1340325,0.04652612,0.002266679,0.0001109855,0.001767611,0.0007117679,0.02974126],"genre_scores_gemma":[0.9274116,0.05513785,0.01031791,0.002051163,0.00112131,0.00003792769,0.0001691694,0.00003056395,0.003722404],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001210113,"threshold_uncertainty_score":0.004789174,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170634666","doi":"10.1038/ng.286","title":"DNA methylation profiles in monozygotic and dizygotic twins","year":2009,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":670,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; University of Toronto; Centre for Addiction and Mental Health","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Institute of Mental Health; National Alliance for Research on Schizophrenia and Depression","keywords":"Biology; DNA methylation; Epigenetics; Genetics; Monozygotic twin; CpG site; Buccal swab; Epigenomics; Twin study; Heritability; Gene; Gene expression","authors":[{"name":"Zachary Kaminsky","is_ca":true},{"name":"Thomas Tang","is_ca":true},{"name":"Sun-Chong Wang","is_ca":true},{"name":"Carolyn Ptak","is_ca":true},{"name":"Gabriel Oh","is_ca":true},{"name":"Albert H.C. Wong","is_ca":true},{"name":"Laura Feldcamp","is_ca":true},{"name":"Carl Virtanen","is_ca":true},{"name":"Jonas Halfvarson","is_ca":false},{"name":"Curt Tysk","is_ca":false},{"name":"Allan F. McRae","is_ca":false},{"name":"Peter M. Visscher","is_ca":false},{"name":"Grant W. Montgomery","is_ca":false},{"name":"Irving I. Gottesman","is_ca":false},{"name":"Nicholas G. Martin","is_ca":false},{"name":"Artūras Petronis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007357303786291861,"gpt":0.2684199468283932,"spread":0.2610626430421014,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002660098,0.0001737915,0.0003721767,0.001200092,0.0004081921,0.000450418,0.0002784448,0.0003740754,0.001515581],"category_scores_gemma":[0.001790385,0.0002427484,0.0002428554,0.000625237,0.0001970155,0.00009926152,0.0004642199,0.0003582693,0.0002571371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002337571,"about_ca_system_score_gemma":0.000152987,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005083147,"about_ca_topic_score_gemma":0.004192358,"domain_scores_codex":[0.9997054,0.00007235134,0.00002853352,0.00008072083,0.00006130718,0.00005175922],"domain_scores_gemma":[0.9995131,0.0001107717,0.00007530759,0.000056555,0.00009158761,0.0001526374],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005950818,0.0002701101,0.600831,0.0000962593,0.0005050182,0.001366784,0.004358691,0.0001668208,0.3687817,0.0008183523,0.000493484,0.01636096],"study_design_scores_gemma":[0.00003127415,0.0003520283,0.9815587,0.00001107438,0.0001688179,0.00337072,0.0009796391,0.000332247,0.01213958,0.0002661743,0.0007707769,0.00001900792],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993937,0.0001033169,0.00007804587,0.000009939154,0.000004695502,0.000002930858,0.0001611587,0.000001802035,0.0002444736],"genre_scores_gemma":[0.9982831,0.0001163909,0.0001742998,0.00002330085,0.000003211866,0.000007237988,0.0002968072,0.000007834818,0.001087834],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005083147,"threshold_uncertainty_score":0.0101071,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1995652309","doi":"10.1016/j.stem.2010.08.002","title":"Polycomb Group Proteins: Multi-Faceted Regulators of Somatic Stem Cells and Cancer","year":2010,"lang":"en","type":"review","venue":"Cell stem cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":668,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hôpital Maisonneuve-Rosemont; Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research","keywords":"Biology; Somatic cell; Polycomb-group proteins; Stem cell; Cell biology; Cancer stem cell; Cancer research; Computational biology; Genetics; Transcription factor; Gene; Repressor","authors":[{"name":"Martin Sauvageau","is_ca":true},{"name":"Guy Sauvageau","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02277004561347768,"gpt":0.2729988263881582,"spread":0.2502287807746805,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008211323,0.001197105,0.001548557,0.00137629,0.0003259603,0.001303558,0.001571614,0.001438749,0.002189409],"category_scores_gemma":[0.0007237993,0.0004036914,0.0002842303,0.002431275,0.001052562,0.001638621,0.0007639577,0.002240506,0.002402444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001055916,"about_ca_system_score_gemma":0.001103849,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001360346,"about_ca_topic_score_gemma":0.003032929,"domain_scores_codex":[0.9997768,0.0000268308,0.00002799343,0.00004095631,0.0001043352,0.00002312536],"domain_scores_gemma":[0.9996518,0.0001189291,0.0000502515,0.00001523607,0.0001081038,0.00005565215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001125721,0.00004255733,0.0002559401,0.00400763,0.00008329994,0.0002478604,0.00004764078,0.0005024532,0.005555132,0.005794762,0.05415444,0.9291957],"study_design_scores_gemma":[0.00002028651,0.00002779689,0.0005612758,0.0003694956,0.00005899409,0.0008986341,0.00004564521,0.0001080886,0.00106869,0.00241408,0.994412,0.00001503799],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001388141,0.9971723,0.0005860195,0.0005166132,0.0004811033,0.000004704375,0.00002424307,0.00001542788,0.001060685],"genre_scores_gemma":[0.001103409,0.9957963,0.0005604784,0.0003324024,0.00053498,0.000008834973,0.00006028558,0.000002811949,0.001600469],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002189409,"threshold_uncertainty_score":0.007661223,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3022131036","doi":"10.7554/elife.54870","title":"Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm","year":2020,"lang":"en","type":"article","venue":"eLife","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":661,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Child Health and Human Development; National Institute of Environmental Health Sciences; Economic and Social Research Council; Canadian Institute for Advanced Research; Medical Research Council; National Institute on Aging; Jacobs Foundation; Lundbeckfonden; Wellcome Trust","keywords":"Pace; Biomarker; Biological age; DNA methylation; Healthy aging; Cohort; Biology; Medicine; Bioinformatics; Gerontology; Internal medicine; Genetics; Gene","authors":[{"name":"Daniel W. Belsky","is_ca":false},{"name":"Avshalom Caspi","is_ca":false},{"name":"Louise Arseneault","is_ca":false},{"name":"Andrea Baccarelli","is_ca":false},{"name":"David L. Corcoran","is_ca":false},{"name":"Xu Gao","is_ca":false},{"name":"Eilís Hannon","is_ca":false},{"name":"Hona Lee Harrington","is_ca":false},{"name":"Line Jee Hartmann Rasmussen","is_ca":false},{"name":"Renate Houts","is_ca":false},{"name":"Kim M. Huffman","is_ca":false},{"name":"William E. Kraus","is_ca":false},{"name":"Dayoon Kwon","is_ca":false},{"name":"Jonathan Mill","is_ca":false},{"name":"Carl F. Pieper","is_ca":false},{"name":"Joseph A. Prinz","is_ca":false},{"name":"Richie Poulton","is_ca":false},{"name":"Joel Schwartz","is_ca":false},{"name":"Karen Sugden","is_ca":false},{"name":"Pantel Vokonas","is_ca":false},{"name":"Benjamin Williams","is_ca":false},{"name":"Terrie E. Moffitt","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04125398878145298,"gpt":0.2906202980546099,"spread":0.2493663092731569,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002383468,0.0004955282,0.0004529499,0.001476427,0.000267218,0.0007572172,0.0007915673,0.0004640763,0.001528843],"category_scores_gemma":[0.005342354,0.0002606592,0.0005147829,0.0007537356,0.0003003448,0.0005384396,0.0007734092,0.000708577,0.0004376858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005747714,"about_ca_system_score_gemma":0.0006036544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004764922,"about_ca_topic_score_gemma":0.006404379,"domain_scores_codex":[0.9993161,0.0002030157,0.00004102256,0.0002869738,0.0001169719,0.00003596172],"domain_scores_gemma":[0.9986618,0.0007508736,0.0002557751,0.0001407007,0.0001467161,0.00004426988],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001119265,0.0001621924,0.3294743,0.0002490906,0.0006497166,0.0001733123,0.0001987729,0.1336267,0.007953172,0.006421337,0.005261214,0.5147108],"study_design_scores_gemma":[0.00008199413,0.0003055814,0.1205612,0.00008924441,0.0001568436,0.0005391117,0.00009087182,0.8405939,0.0112356,0.01356957,0.01270215,0.00007390589],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2748684,0.001973421,0.7110786,0.000685044,0.000113632,0.0002917268,0.004487154,0.001702201,0.004799954],"genre_scores_gemma":[0.6814778,0.0006140724,0.3083628,0.0002295771,0.00005894448,0.0003547123,0.003052654,0.0001078076,0.005741617],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.004764922,"threshold_uncertainty_score":0.01260513,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011180717","doi":"10.1016/j.molcel.2005.12.007","title":"ING Tumor Suppressor Proteins Are Critical Regulators of Chromatin Acetylation Required for Genome Expression and Perpetuation","year":2006,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":654,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Université Laval; Hôtel-Dieu de Québec","funders":"Canadian Institutes of Health Research","keywords":"Biology; Chromatin; Acetylation; Epigenetics; Histone; Cell biology; Cell cycle; Chromatin remodeling; Helicase; DNA; Genetics; Cancer research; Cancer; Gene; RNA","authors":[{"name":"Yannick Doyon","is_ca":true},{"name":"Christelle Cayrou","is_ca":true},{"name":"Mukta Ullah","is_ca":true},{"name":"Anne-Julie Landry","is_ca":true},{"name":"Valérie Côté","is_ca":true},{"name":"William Selleck","is_ca":false},{"name":"William S. Lane","is_ca":false},{"name":"Song Tan","is_ca":false},{"name":"Xiang‐Jiao Yang","is_ca":true},{"name":"Jacques Côté","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007361827146455905,"gpt":0.2377627062011319,"spread":0.2304008790546759,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002056661,0.0004852668,0.0002405445,0.0003834148,0.0003394809,0.0005865602,0.0002479907,0.0002401155,0.001144164],"category_scores_gemma":[0.0002323751,0.000244163,0.0001499096,0.00024381,0.0003735459,0.0003468412,0.0003169792,0.0004872948,0.0007056056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003980518,"about_ca_system_score_gemma":0.0001953734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004357153,"about_ca_topic_score_gemma":0.0009615807,"domain_scores_codex":[0.9999074,0.00001117463,0.000005823389,0.00002379073,0.00003110424,0.00002075571],"domain_scores_gemma":[0.9998935,0.00001504083,0.00003234195,0.00001298098,0.00001641814,0.00002972169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002694097,0.00001489834,0.0010109,0.00004458182,0.000008368043,0.0001548857,0.00002580855,0.0001404012,0.9913489,0.001705394,0.0002401134,0.005036312],"study_design_scores_gemma":[0.00001428978,0.00005822048,0.007835946,0.000002790218,0.00001627403,0.0004781451,0.0000320952,0.001167444,0.9817192,0.0005727957,0.008098423,0.000004483299],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9551153,0.01345661,0.02422527,0.0005541889,0.0001648262,0.0000463147,0.0007465988,0.000591569,0.005099282],"genre_scores_gemma":[0.9892378,0.001877274,0.003039668,0.00005904619,0.00002983804,0.00001304698,0.0007547638,0.00004312449,0.004945457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001144164,"threshold_uncertainty_score":0.003827631,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2579054962","doi":"10.1016/j.cmet.2016.12.011","title":"Serine Is an Essential Metabolite for Effector T Cell Expansion","year":2017,"lang":"en","type":"article","venue":"Cell Metabolism","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":652,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Medical Research Council; Terry Fox Research Institute; Canada Foundation for Innovation","keywords":"Serine; Effector; Biology; Cell biology; T cell; Glycine; Serine hydroxymethyltransferase; Biochemistry; Immune system; Amino acid; Phosphorylation; Immunology","authors":[{"name":"H. Eric","is_ca":true},{"name":"Glenn R. Bantug","is_ca":false},{"name":"Takla Griss","is_ca":true},{"name":"Stephanie A. Condotta","is_ca":true},{"name":"Radia Marie Johnson","is_ca":true},{"name":"Bożena Samborska","is_ca":true},{"name":"Nello Mainolfi","is_ca":false},{"name":"Vipin Suri","is_ca":false},{"name":"Hannah Guak","is_ca":true},{"name":"Maria L. Balmer","is_ca":false},{"name":"Mark Verway","is_ca":true},{"name":"Thomas C. Raissi","is_ca":true},{"name":"Harmony Tsui","is_ca":true},{"name":"Giselle M. Boukhaled","is_ca":true},{"name":"Sofia Henriques da Costa","is_ca":false},{"name":"Christian Frezza","is_ca":false},{"name":"Connie M. Krawczyk","is_ca":true},{"name":"Adam Friedman","is_ca":false},{"name":"Mark Manfredi","is_ca":false},{"name":"Martin J. Richer","is_ca":true},{"name":"Christoph Hess","is_ca":false},{"name":"Russell G. Jones","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01321585532168183,"gpt":0.2811000500560864,"spread":0.2678841947344046,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001924303,0.0004881816,0.0002733185,0.0002868519,0.0002394628,0.0005898539,0.0002416716,0.0003933158,0.001698465],"category_scores_gemma":[0.0001877779,0.000203406,0.0002200102,0.0002218253,0.000243742,0.0005038165,0.000387154,0.000473244,0.0007693476],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004147229,"about_ca_system_score_gemma":0.0004044786,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003760169,"about_ca_topic_score_gemma":0.0007385771,"domain_scores_codex":[0.9998583,0.00002913085,0.00001570275,0.00003126655,0.00003577679,0.00002984744],"domain_scores_gemma":[0.9998461,0.00002158494,0.00003935541,0.00002015862,0.00003130848,0.00004149195],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002939223,0.00001220269,0.0007487267,0.00005224824,0.000008483651,0.0002402825,0.00001103749,0.00009210571,0.9936615,0.0005973496,0.0001189021,0.004163177],"study_design_scores_gemma":[0.00001374554,0.0001974942,0.006357351,0.000007894519,0.00001789247,0.000593748,0.00003451438,0.0004105967,0.9877533,0.0003988374,0.004208961,0.000005525698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9650141,0.01121311,0.01387614,0.0008915345,0.0002232828,0.00004659352,0.001030235,0.0003604742,0.007344475],"genre_scores_gemma":[0.9896271,0.001778841,0.004080057,0.00006169512,0.00003881716,0.00001105405,0.000594696,0.00003151896,0.00377614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001698465,"threshold_uncertainty_score":0.005681932,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4313544615","doi":"10.1038/s41586-022-05580-6","title":"A DNA methylation atlas of normal human cell types","year":2023,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":627,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Leibniz-Gemeinschaft; Stichting Diabetes Onderzoek Nederland; Israel Science Foundation; Human Islet Research Network; National Institute of Diabetes and Digestive and Kidney Diseases; Hadassah Medical Organization; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"DNA methylation; Biology; Chromatin; Epigenetics; Epigenomics; CpG site; Genetics; Epigenetics of physical exercise; Methylation; Enhancer; Differentially methylated regions; Computational biology; Regulation of gene expression; DNA; Gene; Gene expression","authors":[{"name":"Netanel Loyfer","is_ca":false},{"name":"Judith Magenheim","is_ca":false},{"name":"Ayelet Peretz","is_ca":false},{"name":"Gordon Cann","is_ca":false},{"name":"Joerg Bredno","is_ca":false},{"name":"Agnes Klochendler","is_ca":false},{"name":"Ilana Fox-Fisher","is_ca":false},{"name":"Sapir Shabi-Porat","is_ca":false},{"name":"Merav Hecht","is_ca":false},{"name":"Tsuria Pelet","is_ca":false},{"name":"Joshua Moss","is_ca":false},{"name":"Zeina Drawshy","is_ca":false},{"name":"Hamed Amini","is_ca":false},{"name":"Patriss W. Moradi","is_ca":false},{"name":"Sudharani Nagaraju","is_ca":false},{"name":"Dvora Bauman","is_ca":false},{"name":"David Shveiky","is_ca":false},{"name":"Shay Porat","is_ca":false},{"name":"Uri P. Dior","is_ca":false},{"name":"Gurion Rivkin","is_ca":false},{"name":"Omer Or","is_ca":false},{"name":"Nir Hirshoren","is_ca":false},{"name":"Einat Carmon","is_ca":false},{"name":"Alon J. Pikarsky","is_ca":false},{"name":"Abed Khalaileh","is_ca":false},{"name":"Gideon Zamir","is_ca":false},{"name":"Ronit Grinbaum","is_ca":false},{"name":"Machmud Abu Gazala","is_ca":false},{"name":"Ido Mizrahi","is_ca":false},{"name":"Noam Shussman","is_ca":false},{"name":"Amit Korach","is_ca":false},{"name":"Ori Wald","is_ca":false},{"name":"Uzi Izhar","is_ca":false},{"name":"Eldad Erez","is_ca":false},{"name":"Vladimir Yutkin","is_ca":false},{"name":"Yaacov Samet","is_ca":false},{"name":"Devorah Rotnemer Golinkin","is_ca":false},{"name":"Kirsty L. Spalding","is_ca":false},{"name":"Henrik Druid","is_ca":false},{"name":"Peter Arner","is_ca":false},{"name":"A. M. James Shapiro","is_ca":true},{"name":"Markus Grompe","is_ca":false},{"name":"Alex Aravanis","is_ca":false},{"name":"Oliver Venn","is_ca":false},{"name":"Arash Jamshidi","is_ca":false},{"name":"Ruth Shemer","is_ca":false},{"name":"Yuval Dor","is_ca":false},{"name":"Benjamin Gläser","is_ca":false},{"name":"Tommy Kaplan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007973071136316333,"gpt":0.2760977527922245,"spread":0.2681246816559082,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004758182,0.0003309248,0.0005305707,0.002815589,0.0004864742,0.0005810315,0.000631244,0.0004170406,0.00554513],"category_scores_gemma":[0.000716655,0.0002857846,0.0003889735,0.002757039,0.0001981676,0.0003144143,0.0008080709,0.0005173213,0.00261882],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005278491,"about_ca_system_score_gemma":0.0009198472,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003003478,"about_ca_topic_score_gemma":0.006150391,"domain_scores_codex":[0.9995493,0.00006628983,0.00003841643,0.0001771229,0.0001242423,0.00004464125],"domain_scores_gemma":[0.999546,0.0000832245,0.00006691551,0.0001298159,0.0001156503,0.00005827692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001103103,0.00008200956,0.05933494,0.001917488,0.0006787116,0.000818353,0.0005181241,0.005788447,0.6112799,0.006456919,0.04821804,0.263804],"study_design_scores_gemma":[0.00009004689,0.0002794503,0.2814124,0.0002308936,0.0005096058,0.005809013,0.000180351,0.0107916,0.1578636,0.008348708,0.5343678,0.0001166134],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.3023606,0.02335003,0.2295104,0.0007563704,0.0003146363,0.0006269673,0.3891975,0.01143635,0.04244722],"genre_scores_gemma":[0.4750782,0.009558858,0.1858606,0.000664275,0.0001690827,0.001616939,0.306462,0.001133575,0.01945658],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00554513,"threshold_uncertainty_score":0.01855034,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2020016210","doi":"10.1016/j.molcel.2011.04.005","title":"Genome-wide Regulation of 5hmC, 5mC, and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells","year":2011,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":625,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Institute on Drug Abuse; National Institutes of Health; National Institute of Diabetes and Digestive and Kidney Diseases; University of Pennsylvania","keywords":"Biology; Embryonic stem cell; Gene; Cell biology; Stem cell; Gene expression; Genome; Regulation of gene expression; Genetics","authors":[{"name":"Yufei Xu","is_ca":false},{"name":"Feizhen Wu","is_ca":false},{"name":"Li Tan","is_ca":false},{"name":"Lingchun Kong","is_ca":false},{"name":"Lijun Xiong","is_ca":false},{"name":"Jie Deng","is_ca":false},{"name":"Andrew J. Barbera","is_ca":false},{"name":"Lijuan Zheng","is_ca":false},{"name":"Haikuo Zhang","is_ca":false},{"name":"Stephen Huang","is_ca":false},{"name":"Jinrong Min","is_ca":true},{"name":"Thomas B. Nicholson","is_ca":false},{"name":"Taiping Chen","is_ca":false},{"name":"Guoliang Xu","is_ca":false},{"name":"Yang Shi","is_ca":false},{"name":"Kun Zhang","is_ca":false},{"name":"Yujiang Geno Shi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007868205985788402,"gpt":0.193723213323455,"spread":0.1858550073376666,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002340436,0.0001934025,0.0004015203,0.0007458651,0.0002471327,0.0004849198,0.0002258905,0.0002654909,0.00125047],"category_scores_gemma":[0.0001663848,0.0003013648,0.0003445219,0.0004363702,0.000342016,0.0001629337,0.0002603311,0.0004636982,0.0002141351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004309513,"about_ca_system_score_gemma":0.0002297208,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002997454,"about_ca_topic_score_gemma":0.007119116,"domain_scores_codex":[0.9997599,0.00002634542,0.00001746661,0.0000730468,0.00006765531,0.00005559885],"domain_scores_gemma":[0.9998422,0.00003235534,0.00004314286,0.00002090963,0.00002085686,0.00004059581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001508213,0.000006613628,0.000918899,0.00001169569,0.00001104851,0.00001816713,0.00002483309,0.00004331732,0.9977795,0.00009537453,0.00003215505,0.0009074212],"study_design_scores_gemma":[0.00003165568,0.0001574577,0.1008663,0.000006511024,0.00008682301,0.0001337912,0.0001059113,0.001069007,0.8950078,0.0001412728,0.002378759,0.00001455298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936632,0.002251099,0.00171986,0.0001111134,0.00002557102,0.00001314402,0.001117702,0.00006855546,0.001029706],"genre_scores_gemma":[0.9938043,0.0005896251,0.0008939581,0.00008190284,0.00000945601,0.00003379507,0.00134852,0.00003762491,0.003200743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002997454,"threshold_uncertainty_score":0.005960047,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2298824325","doi":"10.1073/pnas.1519286113","title":"Identification of tissue-specific cell death using methylation patterns of circulating DNA","year":2016,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":621,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; Israel Science Foundation; Juvenile Diabetes Research Foundation International; Deutsche Forschungsgemeinschaft; Teva Pharmaceutical Industries","keywords":"Programmed cell death; DNA methylation; Pancreas; Cell type; Biology; Pathological; Pathology; Cell; Pancreatic cancer; Cancer research; Cancer; Medicine; Apoptosis; Endocrinology; Biochemistry; Gene expression; Genetics; Gene","authors":[{"name":"Roni Lehmann‐Werman","is_ca":false},{"name":"Daniel Neiman","is_ca":false},{"name":"Hai Zemmour","is_ca":false},{"name":"Joshua Moss","is_ca":false},{"name":"Judith Magenheim","is_ca":false},{"name":"Adi Vaknin‐Dembinsky","is_ca":false},{"name":"Sten Rubertsson","is_ca":false},{"name":"Bengt Nellgård","is_ca":false},{"name":"Kaj Blennow","is_ca":false},{"name":"Henrik Zetterberg","is_ca":false},{"name":"Kirsty L. Spalding","is_ca":false},{"name":"Michael J. Haller","is_ca":false},{"name":"Clive Wasserfall","is_ca":false},{"name":"Desmond Schatz","is_ca":false},{"name":"Carla J. Greenbaum","is_ca":false},{"name":"Craig Dorrell","is_ca":false},{"name":"Markus Grompe","is_ca":false},{"name":"Aviad Zick","is_ca":false},{"name":"Ayala Hubert","is_ca":false},{"name":"Myriam Maoz","is_ca":false},{"name":"Volker Fendrich","is_ca":false},{"name":"Detlef K. Bartsch","is_ca":false},{"name":"Talia Golan","is_ca":false},{"name":"Shmuel A. Ben Sasson","is_ca":false},{"name":"Gideon Zamir","is_ca":false},{"name":"Aharon Razin","is_ca":false},{"name":"Howard Cedar","is_ca":false},{"name":"A. M. James Shapiro","is_ca":true},{"name":"Benjamin Gläser","is_ca":false},{"name":"Ruth Shemer","is_ca":false},{"name":"Yuval Dor","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05474880091073432,"gpt":0.3213297548903827,"spread":0.2665809539796484,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003718323,0.0003232069,0.0002883652,0.0006369016,0.0001196262,0.0003370696,0.0002029972,0.0004913578,0.0006952318],"category_scores_gemma":[0.0008454061,0.0001998293,0.0001923999,0.0002729248,0.0003000637,0.0002572249,0.0002269244,0.0004964569,0.000250302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001857999,"about_ca_system_score_gemma":0.0001842699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005844632,"about_ca_topic_score_gemma":0.0009137239,"domain_scores_codex":[0.9997028,0.00004365561,0.00001522121,0.0001380999,0.0000731809,0.00002707453],"domain_scores_gemma":[0.9996531,0.0001236948,0.00009497816,0.00004177606,0.00005504458,0.00003134898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001505476,0.00001497219,0.006657637,0.0000517927,0.00002266841,0.00005458397,0.00006801577,0.0001636895,0.9811971,0.0001324627,0.0000610857,0.01142547],"study_design_scores_gemma":[0.00001528062,0.0004175263,0.03196491,0.00001997427,0.00006151851,0.0006963604,0.00007369355,0.004670636,0.9590586,0.000591816,0.002403106,0.00002656059],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.863862,0.004198018,0.1278569,0.0002982678,0.00008470748,0.0001251479,0.001517012,0.000348411,0.00170944],"genre_scores_gemma":[0.9307827,0.002024383,0.06421617,0.000230521,0.00003648113,0.0001198568,0.0006441826,0.00004769138,0.001898045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006952318,"threshold_uncertainty_score":0.002325773,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2013785611","doi":"10.1038/nature10805","title":"Enhancer decommissioning by LSD1 during embryonic stem cell differentiation","year":2012,"lang":"en","type":"article","venue":"Nature","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":614,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; National Human Genome Research Institute; Medical Research Council; Canadian Institutes of Health Research","keywords":"Enhancer; Biology; Chromatin; Cell biology; Demethylase; Histone; Cellular differentiation; Chromatin remodeling; Reprogramming; Transcription factor; Genetics; Cell; Gene","authors":[{"name":"Warren A. Whyte","is_ca":false},{"name":"Steve Bilodeau","is_ca":false},{"name":"David A. Orlando","is_ca":false},{"name":"Heather A. Hoke","is_ca":false},{"name":"Garrett M. Frampton","is_ca":false},{"name":"C. T. Foster","is_ca":false},{"name":"Shaun M. Cowley","is_ca":false},{"name":"Richard A. Young","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004034507270765506,"gpt":0.2424457868316482,"spread":0.2384112795608827,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001709125,0.0001516294,0.0002488474,0.0001870353,0.0002192375,0.0004768878,0.0002345335,0.0002177945,0.001564608],"category_scores_gemma":[0.0001474066,0.0002353132,0.0002439847,0.0001135603,0.0002498661,0.0003930349,0.0003817271,0.0006109273,0.0004079865],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005329253,"about_ca_system_score_gemma":0.0003747129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001180632,"about_ca_topic_score_gemma":0.002650382,"domain_scores_codex":[0.9999005,0.00000934995,0.000008810732,0.00002163265,0.00002337758,0.00003640062],"domain_scores_gemma":[0.9998927,0.000017553,0.00002579015,0.00001876604,0.00001387252,0.00003143009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001872198,0.000008921174,0.0008843604,0.00003006607,0.000004905241,0.0001023905,0.00002798276,0.00006603364,0.9960425,0.0005950596,0.0000912883,0.001959203],"study_design_scores_gemma":[0.000008501102,0.00004233382,0.008616644,0.000004028248,0.000008285553,0.0001346808,0.00005342976,0.0003259513,0.9882237,0.0001340439,0.002445045,0.000003495083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891512,0.003367406,0.003803567,0.0002074351,0.00004679281,0.000009315349,0.000345954,0.0001506747,0.002917567],"genre_scores_gemma":[0.9946689,0.0003950413,0.0007303677,0.00006159092,0.000006707732,0.000007124964,0.0002993916,0.00002550445,0.003805276],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001564608,"threshold_uncertainty_score":0.005234182,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1989421786","doi":"10.1038/ng1068","title":"DNMT1 is required to maintain CpG methylation and aberrant gene silencing in human cancer cells","year":2002,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":611,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Parks Canada","funders":"","keywords":"DNMT1; DNA methylation; Biology; Methylation; DNA methyltransferase; Gene silencing; Methyltransferase; Cancer research; CpG site; Tumor suppressor gene; Molecular biology; Cancer epigenetics; Cancer; Carcinogenesis; Gene expression; Gene; Genetics","authors":[{"name":"Marie‐France Robert","is_ca":true},{"name":"Steves Morin","is_ca":false},{"name":"Normand Beaulieu","is_ca":false},{"name":"France Gauthier","is_ca":false},{"name":"Ian C. Chute","is_ca":false},{"name":"Annie Barsalou","is_ca":false},{"name":"A. Robert MacLeod","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01544785194000415,"gpt":0.2888930901438567,"spread":0.2734452382038526,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001559324,0.0001566961,0.0002901418,0.0002228515,0.0002354979,0.0004571484,0.0002437264,0.0002580647,0.001219966],"category_scores_gemma":[0.0004194379,0.0002946317,0.0001641723,0.0002285276,0.0002208781,0.0002090084,0.0002553363,0.0004880516,0.0005792931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005764664,"about_ca_system_score_gemma":0.0003434627,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002657277,"about_ca_topic_score_gemma":0.002907963,"domain_scores_codex":[0.9999079,0.00001210229,0.000008103319,0.00002138576,0.00002967012,0.00002088261],"domain_scores_gemma":[0.9998459,0.00002925967,0.00003633398,0.00003517351,0.00002195023,0.00003139997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002056397,0.000008213063,0.001242806,0.00005967269,0.00001683327,0.00012271,0.00002931734,0.000196929,0.9936639,0.0004802302,0.0001889565,0.003784756],"study_design_scores_gemma":[0.0000250993,0.00008365403,0.01714267,0.000007065539,0.00003944616,0.0009140567,0.00003955696,0.001544456,0.9711205,0.0003933968,0.008681986,0.000008035678],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9818392,0.007277218,0.005608723,0.0005765533,0.00006682418,0.00002335965,0.0011548,0.0003683524,0.00308494],"genre_scores_gemma":[0.9949067,0.0009955202,0.001356413,0.00003798104,0.000008983102,0.00001054629,0.0005996441,0.00002905954,0.002055033],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002657277,"threshold_uncertainty_score":0.005283654,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2107766358","doi":"10.1038/ng.501","title":"Genome-wide association study identifies five loci associated with lung function","year":2009,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":598,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Child Health and Human Development; National Institute of Diabetes and Digestive and Kidney Diseases; Biocenter, University of Oulu; National Heart, Lung, and Blood Institute; NIHR Cambridge Biomedical Research Centre; Helmholtz Zentrum München; Wellcome Trust; Cancer Research UK; Asthma and Lung UK; Biotechnology and Biological Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; National Institutes of Health; Oulun Yliopisto; European Commission; University of Bristol; Vetenskapsrådet; Healthway; British Lung Foundation; National Institute of Mental Health; International Osteoporosis Foundation; Bundesministerium für Bildung und Forschung; National Institute for Health and Care Research; Genome Canada; British Heart Foundation; Scottish Government; AstraZeneca; Tays; King's College London; Juvenile Diabetes Research Foundation International","keywords":"Genome-wide association study; Biology; Genotyping; COPD; Vital capacity; Locus (genetics); Genetics; Pulmonary function testing; Genetic association; In silico; Lung function; Internal medicine; Bioinformatics; Single-nucleotide polymorphism; Genotype; Medicine; Lung; Gene; Diffusing capacity","authors":[{"name":"Emmanouela Repapi","is_ca":false},{"name":"Ian Sayers","is_ca":false},{"name":"Louise V. Wain","is_ca":false},{"name":"Paul R. Burton","is_ca":false},{"name":"Toby Johnson","is_ca":false},{"name":"Ma’en Obeidat","is_ca":false},{"name":"Jing Hua Zhao","is_ca":false},{"name":"Adaikalavan Ramasamy","is_ca":false},{"name":"Guangju Zhai","is_ca":false},{"name":"Véronique Vitart","is_ca":false},{"name":"Jennifer E. Huffman","is_ca":false},{"name":"Wilmar Igl","is_ca":false},{"name":"Eva Albrecht","is_ca":false},{"name":"Panos Deloukas","is_ca":false},{"name":"John Henderson","is_ca":false},{"name":"Raquel Granell","is_ca":false},{"name":"Wendy L. McArdle","is_ca":false},{"name":"Alicja R. Rudnicka","is_ca":false},{"name":"Inês Barroso","is_ca":false},{"name":"Ruth J. F. Loos","is_ca":false},{"name":"Nicholas J. Wareham","is_ca":false},{"name":"Linda Mustelin","is_ca":false},{"name":"Taina Rantanen","is_ca":false},{"name":"Ida Surakka","is_ca":false},{"name":"Medea Imboden","is_ca":false},{"name":"H.‐Erich Wichmann","is_ca":false},{"name":"Ivica Grković","is_ca":false},{"name":"Stipan Janković","is_ca":false},{"name":"Lina Zgaga","is_ca":false},{"name":"Anna‐Liisa Hartikainen","is_ca":false},{"name":"Leena Peltonen","is_ca":false},{"name":"Ulf Gyllensten","is_ca":false},{"name":"Åsa Johansson","is_ca":false},{"name":"Ghazal Zaboli","is_ca":false},{"name":"Harry Campbell","is_ca":false},{"name":"Sarah H. Wild","is_ca":false},{"name":"James F. Wilson","is_ca":false},{"name":"Sven Gläser","is_ca":false},{"name":"Georg Homuth","is_ca":false},{"name":"Henry Völzke","is_ca":false},{"name":"Massimo Mangino","is_ca":false},{"name":"Nicole Soranzo","is_ca":false},{"name":"Tim D. Spector","is_ca":false},{"name":"Ozren Polašek","is_ca":false},{"name":"Igor Rudan","is_ca":false},{"name":"Alan F. Wright","is_ca":false},{"name":"Markku Heliövaara","is_ca":false},{"name":"Samuli Ripatti","is_ca":false},{"name":"Anneli Pouta","is_ca":false},{"name":"Åsa Torinsson Naluai","is_ca":false},{"name":"Anna‐Carin Olin","is_ca":false},{"name":"Kjell Torén","is_ca":false},{"name":"Matthew N. Cooper","is_ca":false},{"name":"Lyle J. Palmer","is_ca":false},{"name":"Aroon D. Hingorani","is_ca":false},{"name":"S. Goya Wannamethee","is_ca":false},{"name":"Peter H. Whincup","is_ca":false},{"name":"George Davey Smith","is_ca":false},{"name":"Shah Ebrahim","is_ca":false},{"name":"Tricia M. McKeever","is_ca":false},{"name":"Ian Pavord","is_ca":false},{"name":"Andrew K. MacLeod","is_ca":false},{"name":"Andrew D. Morris","is_ca":false},{"name":"David J. Porteous","is_ca":false},{"name":"Cyrus Cooper","is_ca":false},{"name":"Elaine Dennison","is_ca":false},{"name":"Seif O. Shaheen","is_ca":false},{"name":"Stefan Karrasch","is_ca":false},{"name":"Eva Schnabel","is_ca":false},{"name":"Holger Schulz","is_ca":false},{"name":"Harald Grallert","is_ca":false},{"name":"Nabila Bouatia‐Naji","is_ca":false},{"name":"Jérôme Delplanque","is_ca":false},{"name":"Philippe Froguel","is_ca":false},{"name":"John Blakey","is_ca":false},{"name":"John Britton","is_ca":false},{"name":"Richard Morris","is_ca":false},{"name":"John W. Holloway","is_ca":false},{"name":"Debbie A. Lawlor","is_ca":false},{"name":"Jennie Hui","is_ca":false},{"name":"Fredrik Nyberg","is_ca":false},{"name":"Marjo‐Riitta Järvelin","is_ca":false},{"name":"Cathy Jackson","is_ca":false},{"name":"Mika Kähönen","is_ca":false},{"name":"Jaakko Kaprio","is_ca":false},{"name":"Nicole Probst‐Hensch","is_ca":false},{"name":"Beate Koch","is_ca":false},{"name":"Caroline Hayward","is_ca":false},{"name":"David M. Evans","is_ca":false},{"name":"Paul Elliott","is_ca":false},{"name":"David P. Strachan","is_ca":false},{"name":"Ian P. Hall","is_ca":false},{"name":"Martin D. Tobin","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004644334868257112,"gpt":0.2422298275555708,"spread":0.2375854926873137,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008253987,0.0004839394,0.0005222766,0.001606948,0.0006265611,0.0005340193,0.0006104856,0.0007894972,0.002017028],"category_scores_gemma":[0.001136901,0.0003365039,0.0006714115,0.001553808,0.0005701154,0.0001839248,0.0005076051,0.000829115,0.0002334087],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002107269,"about_ca_system_score_gemma":0.0002951425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002785817,"about_ca_topic_score_gemma":0.003605768,"domain_scores_codex":[0.9994813,0.0001439765,0.00004538581,0.0001789594,0.00008000875,0.00007037017],"domain_scores_gemma":[0.9986269,0.0006026486,0.0003206281,0.0001027861,0.00009069217,0.0002563281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004002322,0.0003555586,0.8674473,0.00009877397,0.00159012,0.00156604,0.0003070022,0.0002880797,0.1139083,0.000442364,0.0004925324,0.009501673],"study_design_scores_gemma":[0.00008586249,0.0001968629,0.9939587,0.000006483216,0.0004635726,0.001022134,0.00008847771,0.0004583392,0.003139088,0.0001960928,0.0003728545,0.00001140733],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975678,0.0006861428,0.0008515695,0.0001193852,0.00001338749,0.000006516376,0.000268286,0.00002488303,0.0004619274],"genre_scores_gemma":[0.9988237,0.0001241028,0.0004868516,0.00003598715,0.00001157597,0.000005332825,0.0001767332,0.000006991266,0.000328753],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002785817,"threshold_uncertainty_score":0.006747603,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2061846271","doi":"10.1182/blood-2010-11-321208","title":"Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation","year":2010,"lang":"en","type":"article","venue":"Blood","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":597,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Ontario Institute for Cancer Research; University of Toronto; BC Cancer Agency","funders":"Canadian Institutes of Health Research; Knut och Alice Wallenbergs Stiftelse; Karolinska Institutet; Stiftelsen för Strategisk Forskning; Ontario Genomics; Terry Fox Foundation; GlaxoSmithKline; Ontario Innovation Trust; Deutsche Forschungsgemeinschaft; Ontario Genomics Institute; BC Cancer Foundation; Wellcome Trust; Leukemia and Lymphoma Society; Genome Canada; Pfizer","keywords":"EZH2; Biology; Histone H3; Histone methyltransferase; Molecular biology; PRC2; Methyltransferase; Histone; Methylation; Histone methylation; Mutation; Cancer research; DNA methylation; Genetics; Gene expression; Gene","authors":[{"name":"Damian Yap","is_ca":true},{"name":"Justin Chu","is_ca":true},{"name":"Tobias Berg","is_ca":true},{"name":"Matthieu Schapira","is_ca":true},{"name":"Siwei Cheng","is_ca":true},{"name":"Annie Moradian","is_ca":true},{"name":"Ryan D. Morin","is_ca":true},{"name":"Andrew J. Mungall","is_ca":true},{"name":"Barbara Meissner","is_ca":true},{"name":"Merrill Boyle","is_ca":true},{"name":"Víctor E. Márquez","is_ca":false},{"name":"Marco A. Marra","is_ca":true},{"name":"Randy D. Gascoyne","is_ca":true},{"name":"R. Keith Humphries","is_ca":true},{"name":"C.H. Arrowsmith","is_ca":true},{"name":"Gregg B. Morin","is_ca":true},{"name":"Samuel Aparício","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01067644703807115,"gpt":0.2680245912378236,"spread":0.2573481441997524,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000182593,0.0005597272,0.0002392394,0.0001854003,0.0001563287,0.0002711375,0.0002618566,0.0003096434,0.001051257],"category_scores_gemma":[0.0001687301,0.0002075892,0.0002746473,0.0001343773,0.0002951974,0.0001440873,0.0002153478,0.0004276712,0.0003050059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003964639,"about_ca_system_score_gemma":0.0002249476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005402538,"about_ca_topic_score_gemma":0.001165908,"domain_scores_codex":[0.9998428,0.00002745265,0.00001838102,0.00003473532,0.00005516276,0.00002151565],"domain_scores_gemma":[0.9999213,0.00001617489,0.0000303924,0.00001096507,0.000006012569,0.00001514653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004654374,0.000009532626,0.0003649266,0.00001391763,0.000009644367,0.00009790842,0.000005420675,0.000136412,0.9984903,0.00008439083,0.00002881084,0.0007122232],"study_design_scores_gemma":[0.00002195463,0.00008358566,0.001578729,0.000001227263,0.00001264433,0.0004190618,0.000004785123,0.0008293381,0.9963421,0.0000356141,0.0006679973,0.000002973101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930453,0.000557196,0.004724709,0.0001367264,0.00003106778,0.00003336654,0.0002442037,0.0001702782,0.001057198],"genre_scores_gemma":[0.9966249,0.0001958625,0.001959941,0.00003491742,0.000005264015,0.00001761027,0.00009654028,0.00001953716,0.001045527],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001051257,"threshold_uncertainty_score":0.003516793,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2138566050","doi":"10.1101/cshperspect.a000935","title":"Transcriptional Regulation by P53","year":2010,"lang":"en","type":"review","venue":"Cold Spring Harbor Perspectives in Biology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":578,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Cancer Institute; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; RNA polymerase II; Transcription factor; Chromatin; Gene; Mediator; Histone; Transcription (linguistics); Cell biology; Transcriptional regulation; Transcription preinitiation complex; Genetics; Regulation of gene expression; Promoter; Gene expression","authors":[{"name":"Rachel Beckerman","is_ca":false},{"name":"Carol Prives","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02398937737902362,"gpt":0.3277406867659321,"spread":0.3037513093869085,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003154399,0.0006430121,0.0005992908,0.0007976773,0.0002253712,0.0006924088,0.0006097796,0.0008723987,0.001762538],"category_scores_gemma":[0.0002866523,0.0001879044,0.0001941956,0.0008194161,0.0008478643,0.0008457732,0.0006314598,0.001128856,0.002986054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006633337,"about_ca_system_score_gemma":0.0004115008,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004567631,"about_ca_topic_score_gemma":0.0004713161,"domain_scores_codex":[0.9998571,0.00002135567,0.00001314013,0.00004433116,0.00004749567,0.00001668842],"domain_scores_gemma":[0.9998965,0.00003377446,0.00001722618,0.000009605895,0.00002927048,0.00001343545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009580107,0.00003858853,0.0003270052,0.003132334,0.00003093952,0.0004222069,0.00007911179,0.0004487458,0.03955442,0.01418422,0.02164101,0.9200457],"study_design_scores_gemma":[0.00001363882,0.00007281266,0.001448107,0.0004893441,0.00001940911,0.001576043,0.00004243372,0.0001348543,0.01215911,0.005496843,0.9785298,0.00001767011],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001151747,0.9888589,0.001464053,0.0006543167,0.0006025512,0.000009080039,0.00004689686,0.00004781247,0.00716468],"genre_scores_gemma":[0.00987255,0.9840367,0.0006572853,0.0004551206,0.0005035157,0.00001558336,0.00006846921,0.000008240957,0.004382443],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001762538,"threshold_uncertainty_score":0.00589627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2560510482","doi":"10.1038/ng.3721","title":"Disease variants alter transcription factor levels and methylation of their binding sites","year":2016,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":564,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek; ZonMw","keywords":"Biology; DNA methylation; Genetics; Methylation; Single-nucleotide polymorphism; DNA binding site; CpG site; Expression quantitative trait loci; Quantitative trait locus; Differentially methylated regions; Transcription factor; CTCF; Genome-wide association study; Computational biology; Gene; Promoter; Gene expression; Genotype; Enhancer","authors":[{"name":"Marc Jan Bonder","is_ca":false},{"name":"René Luijk","is_ca":false},{"name":"Daria V. Zhernakova","is_ca":false},{"name":"Matthijs Moed","is_ca":false},{"name":"Patrick Deelen","is_ca":false},{"name":"Martijn Vermaat","is_ca":false},{"name":"Maarten van Iterson","is_ca":false},{"name":"Freerk van Dijk","is_ca":false},{"name":"Michiel van Galen","is_ca":false},{"name":"Jan Bot","is_ca":false},{"name":"Roderick C. Slieker","is_ca":false},{"name":"P. Mila Jhamai","is_ca":false},{"name":"Michaël Verbiest","is_ca":false},{"name":"H. Eka D. Suchiman","is_ca":false},{"name":"Marijn Verkerk","is_ca":false},{"name":"Ruud van der Breggen","is_ca":false},{"name":"Jeroen van Rooij","is_ca":false},{"name":"Nico Lakenberg","is_ca":false},{"name":"Wibowo Arindrarto","is_ca":false},{"name":"Szymon M. Kiełbasa","is_ca":false},{"name":"Iris H. Jonkers","is_ca":false},{"name":"Peter van ‘t Hof","is_ca":false},{"name":"Irene Nooren","is_ca":false},{"name":"Marian Beekman","is_ca":false},{"name":"Joris Deelen","is_ca":false},{"name":"Alexandra Zhernakova","is_ca":false},{"name":"Ettje F. Tigchelaar","is_ca":false},{"name":"Morris A. Swertz","is_ca":false},{"name":"Albert Hofman","is_ca":false},{"name":"André G. Uitterlinden","is_ca":false},{"name":"René Pool","is_ca":false},{"name":"Jenny van Dongen","is_ca":false},{"name":"Jouke‐Jan Hottenga","is_ca":false},{"name":"Coen D.A. Stehouwer","is_ca":false},{"name":"Carla Kallen","is_ca":false},{"name":"Casper G. Schalkwijk","is_ca":false},{"name":"Leonard H. van den Berg","is_ca":false},{"name":"Erik W. van Zwet","is_ca":false},{"name":"Hailiang Mei","is_ca":false},{"name":"Yang Li","is_ca":false},{"name":"Mathieu Lemire","is_ca":true},{"name":"Thomas J. Hudson","is_ca":true},{"name":"P. Eline Slagboom","is_ca":false},{"name":"Cisca Wijmenga","is_ca":false},{"name":"Jan H. Veldink","is_ca":false},{"name":"Marleen M. J. van Greevenbroek","is_ca":false},{"name":"Cornelia M. van Duijn","is_ca":false},{"name":"Dorret I. Boomsma","is_ca":false},{"name":"Aaron Isaacs","is_ca":false},{"name":"Rick Jansen","is_ca":false},{"name":"Joyce B. J. van Meurs","is_ca":false},{"name":"Peter A.C. ’t Hoen","is_ca":false},{"name":"Lude Franke","is_ca":false},{"name":"Bastiaan T. Heijmans","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02096819672398866,"gpt":0.2761229753333763,"spread":0.2551547786093877,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002768966,0.0005874145,0.0004270029,0.0007211761,0.0002639128,0.0004988175,0.0003587075,0.0008831343,0.007170626],"category_scores_gemma":[0.0008248142,0.0003157417,0.0003900065,0.0005422428,0.0003859797,0.0002405328,0.0002881805,0.0006650156,0.0005623032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002464828,"about_ca_system_score_gemma":0.0001069411,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001487013,"about_ca_topic_score_gemma":0.001714531,"domain_scores_codex":[0.9996091,0.00006898857,0.00005587631,0.000152261,0.00005981861,0.00005405517],"domain_scores_gemma":[0.9994843,0.0001821617,0.0001477848,0.00006202742,0.00003636951,0.00008743841],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001591927,0.00006994374,0.02675352,0.00008700739,0.0003863315,0.000951856,0.0001179536,0.0004983865,0.9614544,0.001206233,0.0004453897,0.006437053],"study_design_scores_gemma":[0.0002934195,0.0009050475,0.3988895,0.00005780608,0.0009073905,0.01257289,0.0003008636,0.004901482,0.5666737,0.004063593,0.01033042,0.0001039396],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914514,0.001336476,0.00371954,0.0003130584,0.0001201355,0.000008910612,0.001442757,0.0001474837,0.001460241],"genre_scores_gemma":[0.9975235,0.0002289027,0.0007083341,0.00007813076,0.00002408931,0.000005739999,0.0003586947,0.00004796084,0.001024512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007170626,"threshold_uncertainty_score":0.02398813,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}