{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":2268,"total_is_capped":false,"direct_labels_cover":2,"predictions_cover":2268,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"95f170f4c87e","filters":{"topic":"Glycosylation and Glycoproteins Research"}},"results":[{"id":"W2112921913","doi":"10.1146/annurev.biochem.76.061005.092322","title":"Glycosyltransferases: Structures, Functions, and Mechanisms","year":2007,"lang":"en","type":"review","venue":"Annual Review of Biochemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2069,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Oxocarbenium; Glycosyltransferase; Chemistry; Glycosyl; Leaving group; Nucleotide; Stereochemistry; Glycosidic bond; Enzyme; Biochemistry; Nucleophile; Catalysis","authors":[{"name":"Luke L. Lairson","is_ca":true},{"name":"Bernard Henrissat","is_ca":false},{"name":"G.J. Davies","is_ca":false},{"name":"Stephen G. Withers","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02051968651348204,"gpt":0.3501122993299856,"spread":0.3295926128165035,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005962623,0.000499985,0.001219119,0.00009700804,0.00007335423,0.00001753548,0.0003929885,0.0006400734,0.0001876912],"category_scores_gemma":[0.0003803721,0.0004156229,0.0005309252,0.0003003752,0.0001680435,0.000004587695,0.0001946407,0.000371867,0.00001859221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002732193,"about_ca_system_score_gemma":0.0004551336,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001009361,"about_ca_topic_score_gemma":0.000001878057,"domain_scores_codex":[0.9975692,0.0001096735,0.00085434,0.0006991624,0.0004087905,0.0003588307],"domain_scores_gemma":[0.9983792,0.0000423319,0.0003067353,0.0007667613,0.0002834538,0.0002214683],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001477396,0.00003496504,2.486939e-7,0.1734901,0.0001567356,0.000006829357,0.000001935821,1.521699e-8,0.001029319,0.0001162766,0.006046721,0.819102],"study_design_scores_gemma":[0.0001438612,0.0001322078,2.851691e-7,0.02897126,0.0002795301,0.0001624583,0.00002273055,7.735984e-8,0.006856184,0.00003162943,0.963029,0.0003707692],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00000989149,0.9958068,0.0007306606,0.0000239553,0.00008351191,0.0008002308,0.0008201188,0.00001331438,0.001711534],"genre_scores_gemma":[0.00003588626,0.9945741,0.000375254,0.0001856889,0.0002004124,0.00007508625,0.002464626,0.00005817489,0.002030828],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9569823,"threshold_uncertainty_score":0.9998296,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988966516","doi":"10.1042/bj20040892","title":"Carbohydrate-binding modules: fine-tuning polysaccharide recognition","year":2004,"lang":"en","type":"review","venue":"Biochemical Journal","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2027,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"","keywords":"Glycosidic bond; Carbohydrate-binding module; Polysaccharide; Glycoside hydrolase; Biochemistry; Enzyme; Carbohydrate; Chemistry; Ligand (biochemistry); Receptor","authors":[{"name":"A.B. Boraston","is_ca":true},{"name":"David N. Bolam","is_ca":false},{"name":"Harry J. Gilbert","is_ca":false},{"name":"G.J. Davies","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05268837883997834,"gpt":0.3349764143561579,"spread":0.2822880355161795,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000414329,0.0004567249,0.0007078925,0.0002848206,0.0002121673,0.0001854627,0.0005094507,0.0008018552,0.0001673654],"category_scores_gemma":[0.0003770163,0.0003897155,0.0006763012,0.0003009498,0.00009281464,0.000008329412,0.0002106636,0.001049827,0.0002005716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002051821,"about_ca_system_score_gemma":0.0007001142,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008961942,"about_ca_topic_score_gemma":0.000001718294,"domain_scores_codex":[0.9975712,0.0001662558,0.00072254,0.000541796,0.0004274962,0.000570745],"domain_scores_gemma":[0.9986222,0.00002365871,0.0004003519,0.000366404,0.0001955691,0.0003918662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004203293,0.0000940284,0.000001551611,0.002580842,0.0002922996,0.00009133753,0.00001245581,0.00000291718,0.2440878,0.000006870003,0.002095793,0.7506921],"study_design_scores_gemma":[0.0007146926,0.0002004356,5.15547e-7,0.01009414,0.0002649646,0.001411908,0.00001837805,0.000007311041,0.04665032,0.0001357239,0.9396334,0.0008681686],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003758387,0.9945847,0.0005730208,0.00003602976,0.0003114724,0.0003742441,0.00008425365,0.00002096601,0.0002569059],"genre_scores_gemma":[0.0007562414,0.9951621,0.001135434,0.00002431042,0.001531945,0.00004558648,0.0008282161,0.00009110771,0.0004250135],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9375377,"threshold_uncertainty_score":0.9998555,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2015049954","doi":"10.1016/j.cell.2007.01.049","title":"Complex N-Glycan Number and Degree of Branching Cooperate to Regulate Cell Proliferation and Differentiation","year":2007,"lang":"en","type":"article","venue":"Cell","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":919,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; Genome Canada; National Multiple Sclerosis Society","keywords":"Biology; Golgi apparatus; Glycoprotein; Galectin; Glycan; Cell biology; Cellular differentiation; Biochemistry; Gene; Endoplasmic reticulum","authors":[{"name":"Ken S. Lau","is_ca":true},{"name":"Emily A. Partridge","is_ca":true},{"name":"Ani Grigorian","is_ca":false},{"name":"Cristina I. Silvescu","is_ca":false},{"name":"Vernon N. Reinhold","is_ca":false},{"name":"Michael A. Demetriou","is_ca":false},{"name":"James W. Dennis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02047401091745419,"gpt":0.275867985903882,"spread":0.2553939749864278,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001887815,0.00007617406,0.0000800109,0.00003838698,0.00006326308,0.00002614757,0.00004244024,0.00006585511,0.00003423556],"category_scores_gemma":[0.00001854334,0.00007190352,0.00001440922,0.00006692491,0.00003035994,0.000004343578,0.00005844339,0.00004537278,0.00000573599],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005063445,"about_ca_system_score_gemma":0.0000154033,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002498413,"about_ca_topic_score_gemma":0.00009991767,"domain_scores_codex":[0.9994124,0.00003041601,0.0001428078,0.0001825175,0.00009529023,0.0001366399],"domain_scores_gemma":[0.9996502,0.000007304473,0.0000411812,0.0001204312,0.00009287688,0.00008796719],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001001976,0.00002860285,0.009185197,0.00004690881,0.000003712252,5.632445e-7,0.0001144684,0.00001514184,0.9868875,0.00002206644,0.0002263617,0.003369271],"study_design_scores_gemma":[0.000571319,0.0001126917,0.08630029,0.000006308622,0.00000399259,0.000003282672,0.00002986983,0.0004265984,0.909303,0.00001871485,0.003136782,0.00008715229],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891082,0.00007394932,0.007265672,0.00006084137,0.00002241451,0.0002541752,0.00000548273,0.000004538664,0.003204706],"genre_scores_gemma":[0.9972326,0.00003317667,0.0009545738,0.00008282129,0.00004814201,0.000004122552,0.00006677826,0.00001007145,0.001567718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07758451,"threshold_uncertainty_score":0.2932141,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2060744329","doi":"10.1038/nchembio.96","title":"A potent mechanism-inspired O-GlcNAcase inhibitor that blocks phosphorylation of tau in vivo","year":2008,"lang":"en","type":"article","venue":"Nature Chemical Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":704,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research; Simon Fraser University","keywords":"Phosphorylation; Hyperphosphorylation; Tau protein; Chemistry; In vivo; Tauopathy; Hippocampus; Cell biology; Alzheimer's disease; Biology; Neuroscience; Biochemistry; Neurodegeneration; Internal medicine; Medicine; Disease","authors":[{"name":"Scott A. Yuzwa","is_ca":true},{"name":"Matthew S. Macauley","is_ca":true},{"name":"Julia Heinonen","is_ca":true},{"name":"Xiaoyang Shan","is_ca":true},{"name":"Rebecca J. Dennis","is_ca":false},{"name":"Yuan He","is_ca":false},{"name":"Garrett E. Whitworth","is_ca":true},{"name":"Keith A. Stubbs","is_ca":true},{"name":"Ernest J. McEachern","is_ca":true},{"name":"G.J. Davies","is_ca":false},{"name":"David J. Vocadlo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01186911749163581,"gpt":0.2648897454970829,"spread":0.2530206280054471,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001488488,0.0001617109,0.000222867,0.00009860793,0.00003713078,0.000003194536,0.0002003075,0.001011513,0.0001091859],"category_scores_gemma":[0.0002729651,0.0001429383,0.0001034666,0.0001910996,0.0001597357,0.000003492195,0.0001340982,0.0004212123,0.000005365663],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003322075,"about_ca_system_score_gemma":0.00008462794,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003586772,"about_ca_topic_score_gemma":0.00001739238,"domain_scores_codex":[0.9988235,0.00006045394,0.0002566298,0.0004056598,0.0001585761,0.000295244],"domain_scores_gemma":[0.9993928,0.0000228661,0.00009070076,0.0002750005,0.0001243007,0.00009430584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000263376,0.0001104274,0.003406082,0.00001138401,0.00001585961,0.00001312455,0.00002614708,0.000002600641,0.9940916,0.0002848954,0.0009518619,0.0008226308],"study_design_scores_gemma":[0.0009892279,0.0001803717,0.0005246401,0.00001046338,0.000003368011,0.0000431541,0.00001515664,0.000062903,0.9897689,0.0003473093,0.007916384,0.0001380715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974875,0.0008986113,0.000166575,0.0002731144,0.0001153804,0.0002749977,0.0000405851,0.00001313464,0.0007300355],"genre_scores_gemma":[0.9983589,0.0001878461,0.0006081131,0.0002606082,0.0001374588,0.00003042243,0.0001819893,0.00001452158,0.000220157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006964522,"threshold_uncertainty_score":0.7801714,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110934836","doi":"10.1136/gut.52.6.827","title":"Extracellular MUC3 mucin secretion follows adherence of <i>Lactobacillus</i> strains to intestinal epithelial cells in vitro","year":2003,"lang":"en","type":"article","venue":"Gut","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":661,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"University of Ottawa; University of Nebraska Medical Center","keywords":"Mucin; Extracellular; Microbiology; Biology; Mucin 2; Intestinal epithelium; Molecular biology; Downregulation and upregulation; Intestinal mucosa; Lactobacillus; Western blot; Gene expression; Epithelium; Cell biology; Biochemistry; Medicine; Gene; Internal medicine","authors":[{"name":"David R. Mack","is_ca":true},{"name":"Siv Ahrné","is_ca":false},{"name":"Leroy Hyde","is_ca":true},{"name":"Shu Wei","is_ca":false},{"name":"Michael A. Hollingsworth","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01715862057982136,"gpt":0.2674590272590222,"spread":0.2503004066792008,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003583429,0.0001259999,0.000140233,0.00008782474,0.00002996412,0.00001362187,0.0001587894,0.0001165038,0.0001400688],"category_scores_gemma":[0.0002685642,0.0001269358,0.00007024496,0.0002010968,0.00004880332,0.000004295935,0.00004857953,0.0001250943,0.00005803913],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002136043,"about_ca_system_score_gemma":0.0001224216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001074113,"about_ca_topic_score_gemma":0.0001703755,"domain_scores_codex":[0.9988335,0.0001231756,0.0002581397,0.0003014544,0.0002069416,0.0002767505],"domain_scores_gemma":[0.9994269,0.00001159187,0.00005919885,0.0002809777,0.000103459,0.0001178716],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001311783,0.0000767286,0.0002755777,0.00001742007,0.000005835004,0.000008593095,0.00006511965,0.0001287449,0.9957551,0.0001938685,0.0001669327,0.003174946],"study_design_scores_gemma":[0.0006338482,0.0003250396,0.0004574311,0.00001537691,0.000002769528,0.000006757269,0.00008016533,0.0001213756,0.9714434,0.00008789473,0.02668888,0.0001370769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842345,0.0001647591,0.01225035,0.00004755682,0.00009367683,0.0003848843,0.00005379359,0.000007001423,0.002763526],"genre_scores_gemma":[0.9948054,0.00001796983,0.003041473,0.00005735226,0.00004157404,0.00002885506,0.00005900974,0.00001394492,0.001934424],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02652195,"threshold_uncertainty_score":0.5176291,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2087585684","doi":"10.1038/nrd3012","title":"Carbohydrate vaccines: developing sweet solutions to sticky situations?","year":2010,"lang":"en","type":"review","venue":"Nature Reviews Drug Discovery","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":622,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; International AIDS Vaccine Initiative","keywords":"Sweet spot; Carbohydrate; Food science; Medicine; Virology; Pharmacology; Biotechnology; Chemistry; Biology; Internal medicine","authors":[{"name":"Rena D. Astronomo","is_ca":false},{"name":"Dennis R. Burton","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03834166250939222,"gpt":0.3659571757345617,"spread":0.3276155132251695,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001001656,0.0006856444,0.001502889,0.0003468504,0.0002892412,0.0002328103,0.0008271413,0.001198556,0.00004921364],"category_scores_gemma":[0.001573662,0.0005255127,0.0008262598,0.0009170671,0.0000468203,0.00002425368,0.0005405732,0.001661939,0.0004850787],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001208178,"about_ca_system_score_gemma":0.001202266,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001534809,"about_ca_topic_score_gemma":0.0003792246,"domain_scores_codex":[0.9965273,0.0004596609,0.0009822418,0.0009921391,0.0003888967,0.0006497752],"domain_scores_gemma":[0.997778,0.00007202811,0.0003921489,0.001262469,0.000245177,0.0002502001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00000916056,0.00005650258,0.000001765029,0.006309406,0.0001191727,0.000006367495,0.00001987562,0.000004004843,0.0006845129,0.0006628659,0.02497011,0.9671562],"study_design_scores_gemma":[0.0001140504,0.00002584331,0.000003359458,0.004645616,0.0002049362,0.00002054519,0.000005525953,0.000001713563,0.0001086564,0.00003975658,0.9942069,0.00062309],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00002709837,0.9928682,0.001876606,0.0003975889,0.0007654502,0.003051753,0.0001925836,0.00002547419,0.0007951926],"genre_scores_gemma":[0.00002745572,0.9888021,0.001820049,0.0004834416,0.001031083,0.0008407731,0.002062583,0.00009687083,0.004835678],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9692368,"threshold_uncertainty_score":0.9997196,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2040714286","doi":"10.1038/nchembio.797","title":"Increasing O-GlcNAc slows neurodegeneration and stabilizes tau against aggregation","year":2012,"lang":"en","type":"article","venue":"Nature Chemical Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":615,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Canadian Institutes of Health Research","keywords":"Neurodegeneration; Phosphorylation; Tau protein; Chemistry; Cell biology; Transgene; Protein aggregation; Genetically modified mouse; Alzheimer's disease; Biochemistry; Biology; Disease; Internal medicine; Medicine","authors":[{"name":"Scott A. Yuzwa","is_ca":true},{"name":"Xiaoyang Shan","is_ca":true},{"name":"Matthew S. Macauley","is_ca":true},{"name":"Thomas Clark","is_ca":true},{"name":"Yuliya Skorobogatko","is_ca":false},{"name":"Keith Vosseller","is_ca":false},{"name":"David J. Vocadlo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008889923637870606,"gpt":0.2802744675827916,"spread":0.271384543944921,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002793329,0.000133817,0.0001176557,0.00004564374,0.00007024101,0.00001910337,0.0000968305,0.0006116192,0.0000219765],"category_scores_gemma":[0.0008460126,0.0001155176,0.00004126525,0.00009140862,0.0001170832,0.00001008369,0.0001139223,0.0003130404,0.000008359421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001736085,"about_ca_system_score_gemma":0.00002737225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007515012,"about_ca_topic_score_gemma":0.000005034554,"domain_scores_codex":[0.9990219,0.000138293,0.0001538247,0.000293941,0.00008793714,0.0003040534],"domain_scores_gemma":[0.9994772,0.0000377289,0.00005031523,0.0001923484,0.0001046682,0.0001377349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000980377,0.00003376013,0.01311092,0.000009648618,0.00001036509,2.440643e-7,0.00001546114,9.807708e-7,0.9700829,0.0004121184,0.0003589483,0.01586656],"study_design_scores_gemma":[0.0003978101,0.00006210095,0.002873608,0.000004499388,0.000005042023,0.00002152662,0.00001129192,0.00007299436,0.9490461,0.00007919282,0.04727808,0.0001477151],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950921,0.003250634,0.0001804752,0.0003559467,0.0001532797,0.0001838033,0.00001466786,0.0000185717,0.0007505261],"genre_scores_gemma":[0.9965785,0.0002389149,0.001203252,0.0006620196,0.0005839948,0.00002062869,0.0006400636,0.00001443476,0.00005819597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04691914,"threshold_uncertainty_score":0.4717367,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1531421007","doi":"10.1038/73163","title":"Suppression of tumor growth and metastasis in Mgat5-deficient mice","year":2000,"lang":"en","type":"article","venue":"Nature Medicine","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":566,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; Princess Margaret Cancer Centre; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; Ontario Institute for Cancer Research; University of Toronto","funders":"","keywords":"Cancer research; Biology; Membrane ruffling; Genetically modified mouse; Transgene; Oncogene; Glycan; Kinase; Cell biology; Cancer; Glycoprotein; Gene; Molecular biology; Cell; Biochemistry; Genetics; Cell cycle","authors":[{"name":"Maria Granovsky","is_ca":true},{"name":"Jimmie E. Fata","is_ca":true},{"name":"Judy Pawling","is_ca":true},{"name":"William J. Muller","is_ca":true},{"name":"Rama Khokha","is_ca":true},{"name":"James W. Dennis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005964775490718437,"gpt":0.2819377249747452,"spread":0.2759729494840268,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000219267,0.00008041648,0.0001369112,0.00008397842,0.00002067144,0.000002454004,0.00008986785,0.0001217392,0.0003091917],"category_scores_gemma":[0.0002150926,0.00005698926,0.00001988507,0.0001682049,0.00009846577,0.000002063123,0.00003160472,0.0002073187,0.000002116011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004181715,"about_ca_system_score_gemma":0.00002108657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007110939,"about_ca_topic_score_gemma":0.00002619251,"domain_scores_codex":[0.9992501,0.00005267888,0.0001537261,0.0001980891,0.0002118839,0.0001335594],"domain_scores_gemma":[0.9996986,0.0000150872,0.00002962726,0.000142611,0.00005397453,0.00006011493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002585078,0.00005596989,0.001834489,0.00005903264,0.00001180156,0.00001042323,0.00007567936,0.00000538468,0.9867445,0.00009938471,0.001758206,0.009086573],"study_design_scores_gemma":[0.001870097,0.0004614802,0.01620209,0.00009536617,0.00001371237,0.0000296342,0.00007980279,0.00007669742,0.9379605,0.00007937298,0.04302724,0.0001039876],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886293,0.005972056,0.00001533656,0.001113418,0.00004029505,0.0001538661,0.000008698696,0.000003164214,0.004063824],"genre_scores_gemma":[0.9984921,0.0004027977,0.0002037323,0.0003435876,0.00006843534,0.000006195485,0.00004693577,0.000006998636,0.0004292776],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04878404,"threshold_uncertainty_score":0.3385432,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2057049168","doi":"10.1038/sj.embor.7400705","title":"Mucin‐type O‐glycans in human colon and breast cancer: glycodynamics and functions","year":2006,"lang":"en","type":"review","venue":"EMBO Reports","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":518,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Kingston General Hospital; Queen's University","funders":"Arthritis Society; Natural Sciences and Engineering Research Council of Canada; Mizutani Foundation for Glycoscience","keywords":"Mucin; Glycoprotein; Glycosylation; Glycan; Glycosyltransferase; Antigen; MUC1; Golgi apparatus; Colorectal cancer; Biology; Cancer; Cancer research; Breast cancer; Cell biology; Immunology; Cell; Molecular biology; Biochemistry; Gene; Genetics","authors":[{"name":"Inka Brockhausen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02003206416893069,"gpt":0.3431346333968908,"spread":0.32310256922796,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002605372,0.0002840985,0.0005704023,0.0001717382,0.0001258783,0.0000540143,0.0000711644,0.0004086528,0.00004526035],"category_scores_gemma":[0.00004188504,0.0002611671,0.00009311116,0.0002414466,0.0001074675,0.000004507542,0.0001509465,0.0002765706,0.000001902145],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006387791,"about_ca_system_score_gemma":0.0003167902,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001082734,"about_ca_topic_score_gemma":0.003222261,"domain_scores_codex":[0.9982685,0.0000842965,0.0005621662,0.0006366112,0.0001660022,0.0002824543],"domain_scores_gemma":[0.999103,0.00001068097,0.0002677269,0.0004069115,0.00009727023,0.0001144774],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005728197,0.0002288572,0.007878685,0.006726853,0.000249706,0.0009266553,0.00002678731,0.00003430702,0.001344532,0.00008450381,0.01092239,0.9715195],"study_design_scores_gemma":[0.0001611847,0.00008803234,0.001140906,0.0006356413,0.00007482994,0.001445687,0.000005554811,0.000009066169,0.00001353239,0.00002313933,0.9961197,0.0002827727],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02220813,0.9748673,0.00001156664,0.00004407383,0.0001901948,0.0007366014,0.0001130016,0.00001478691,0.001814327],"genre_scores_gemma":[0.007488586,0.9844983,0.00002824559,0.00001859137,0.0002103061,0.0001358653,0.001095168,0.00004854897,0.006476448],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9851972,"threshold_uncertainty_score":0.999984,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996401266","doi":"10.1073/pnas.0500044102","title":"Engineering N-linked protein glycosylation with diverse O antigen lipopolysaccharide structures in <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":455,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"Wellcome Trust","keywords":"Campylobacter jejuni; Glycan; Escherichia coli; Glycosylation; Biochemistry; N-linked glycosylation; Bacterial outer membrane; Lipopolysaccharide; Chemistry; Biology; Microbiology; Bacteria; Glycoprotein; Gene","authors":[{"name":"Mario F. Feldman","is_ca":true},{"name":"Michael Wacker","is_ca":true},{"name":"Marcela Hernandez","is_ca":true},{"name":"Paul G. Hitchen","is_ca":true},{"name":"Cristina L. Marolda","is_ca":true},{"name":"Michael Kowarik","is_ca":true},{"name":"Howard R. Morris","is_ca":true},{"name":"Anne Dell","is_ca":true},{"name":"Miguel A. Valvano","is_ca":true},{"name":"Markus Aebi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02139543711421838,"gpt":0.2800721242192764,"spread":0.258676687105058,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005008223,0.0000815651,0.00008813405,0.0001183305,0.00007552254,0.0000179579,0.0003815164,0.00008174557,0.00001196145],"category_scores_gemma":[0.0002300403,0.00005636694,0.00003324412,0.0003776195,0.0002042651,0.00003779452,0.00009266331,0.0001213084,7.843352e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002073719,"about_ca_system_score_gemma":0.00004794322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001673472,"about_ca_topic_score_gemma":0.00000189313,"domain_scores_codex":[0.9988313,0.000005522645,0.0001946729,0.0002024763,0.0006243618,0.0001416132],"domain_scores_gemma":[0.9996253,0.000009180334,0.0001561035,0.0000105297,0.0001696538,0.00002918478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005310164,0.0000196266,0.004815467,0.00002086482,0.000007296387,5.466853e-9,0.00003812765,0.002288963,0.9885504,0.003877582,0.00003794704,0.0002905873],"study_design_scores_gemma":[0.00028365,0.00005874372,0.05440508,0.00003707109,0.000001861418,0.000001859382,0.0000375315,0.002524443,0.9412422,0.0005091831,0.0008244981,0.00007388413],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980769,0.00005851366,0.000009898259,0.0007722069,0.000004437999,0.0002988274,0.000005804291,0.000004440521,0.0007690029],"genre_scores_gemma":[0.9957254,0.00001502133,0.003973922,0.00008580798,0.00007387408,0.00001569462,5.05256e-7,0.000004603756,0.0001051932],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04958962,"threshold_uncertainty_score":0.2298577,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2024551447","doi":"10.1074/jbc.x600004200","title":"Lectins: Carbohydrate-specific Reagents and Biological Recognition Molecules","year":2006,"lang":"en","type":"review","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":448,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Glycobiology; Chemistry; Biochemistry; Glycoprotein","authors":[{"name":"Nathan Sharon","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1000227742411254,"gpt":0.3351726498356421,"spread":0.2351498755945167,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005053491,0.0004184375,0.00100948,0.00007970538,0.00008538392,0.00006653767,0.0003115786,0.001193117,0.0001130659],"category_scores_gemma":[0.0004081941,0.0002712322,0.0005481662,0.0001933265,0.0002398006,0.000004877879,0.0001988258,0.0006882544,0.00001389432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005159982,"about_ca_system_score_gemma":0.0001421972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000266707,"about_ca_topic_score_gemma":4.717963e-7,"domain_scores_codex":[0.9977279,0.000256076,0.0009345902,0.0004971921,0.0002374799,0.0003467613],"domain_scores_gemma":[0.9984987,0.00007091315,0.0007212994,0.0002543825,0.0002456806,0.0002089677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002278913,0.0003610744,0.00008990908,0.001998052,0.0003276004,0.0003044679,0.000003911504,0.000001650597,0.1230994,0.000005135477,0.004420893,0.8691601],"study_design_scores_gemma":[0.0003607902,0.0004124982,0.00003254997,0.0007761053,0.00005620609,0.0007615206,0.00001001186,7.948483e-7,0.01141584,0.0001104627,0.9856932,0.00037005],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02765279,0.9705096,0.0001069302,0.00001530033,0.00009495369,0.0002446477,0.00007619068,0.000009554247,0.001289999],"genre_scores_gemma":[0.003124627,0.9946147,0.0004525146,0.00002667199,0.0008644157,0.00002147192,0.0006585438,0.00002755904,0.0002095435],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9812723,"threshold_uncertainty_score":0.999974,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2058384931","doi":"10.1016/j.cell.2009.12.008","title":"Metabolism, Cell Surface Organization, and Disease","year":2009,"lang":"en","type":"review","venue":"Cell","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":448,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Multiple Sclerosis Society; Ontario Genomics Institute; Canadian Institutes of Health Research; Genome Canada; National Multiple Sclerosis Society","keywords":"Biology; Glycosylation; Glycan; Golgi apparatus; Glycoprotein; Cell biology; Cell; Gene; Biochemistry","authors":[{"name":"James W. Dennis","is_ca":true},{"name":"Ivan R. Nabi","is_ca":true},{"name":"Michael A. Demetriou","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01497508972644729,"gpt":0.2849359908258848,"spread":0.2699609010994375,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001017145,0.0002528732,0.0003975242,0.00004851758,0.00007846428,0.00005993467,0.0002082335,0.0002307177,0.0001256881],"category_scores_gemma":[0.0000972303,0.0002178287,0.0001092982,0.0002192253,0.00004055192,0.000002405247,0.0001282347,0.0001447255,0.0001349455],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009742111,"about_ca_system_score_gemma":0.0003951351,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002043778,"about_ca_topic_score_gemma":5.890088e-7,"domain_scores_codex":[0.9988709,0.0001123158,0.0002221091,0.000435128,0.0001449533,0.0002146135],"domain_scores_gemma":[0.999033,0.000009901314,0.0001019524,0.0004172286,0.0001287049,0.0003091776],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006576899,0.0008812262,0.00006638808,0.03792051,0.0001945742,0.0001154852,0.00007477871,0.0000524638,0.01428031,0.0002150362,0.1167913,0.8293422],"study_design_scores_gemma":[0.0001653995,0.00002216823,0.000008138968,0.0001081221,0.0001169387,0.00000392141,0.000001902724,0.000001887283,0.001997469,0.000009399939,0.9973274,0.0002372637],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002016661,0.9969741,0.0001677197,0.00002326654,0.00005819171,0.0004588015,0.00005072225,0.00001374093,0.002051868],"genre_scores_gemma":[0.0002927723,0.9834637,0.0002380154,0.00007637303,0.0001750616,0.000007050656,0.001051804,0.00005041547,0.01464478],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8805361,"threshold_uncertainty_score":0.8882798,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149170646","doi":"10.1093/glycob/cwl040","title":"Fucosylation in prokaryotes and eukaryotes","year":2006,"lang":"en","type":"review","venue":"Glycobiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":444,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Glycoconjugate; Fucosylation; Fucose; Biology; Glycosylation; Fucosyltransferase; Biochemistry; Glycoprotein; Cell biology; Enzyme","authors":[{"name":"Bing Ma","is_ca":true},{"name":"Joanne L. Simala‐Grant","is_ca":true},{"name":"Diane E. Taylor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02917397653801352,"gpt":0.344545864642953,"spread":0.3153718881049395,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002976508,0.0003528048,0.00076468,0.0002908872,0.0000557508,0.00002748992,0.0002130708,0.0008011401,0.00003568746],"category_scores_gemma":[0.0001525946,0.0002980744,0.0001515359,0.0002286174,0.0001510392,0.000003676869,0.0002172356,0.0003126435,0.00005761269],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003103804,"about_ca_system_score_gemma":0.0001826664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008685436,"about_ca_topic_score_gemma":0.000255793,"domain_scores_codex":[0.9980333,0.0003114098,0.0004938757,0.0006698178,0.000088257,0.000403281],"domain_scores_gemma":[0.9993086,0.00005568492,0.0001626336,0.00035814,0.00004761856,0.00006735801],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003246875,0.00006312029,0.0006718973,0.002251465,0.00005206832,0.00001773293,0.00000637924,0.00000225646,0.0002206172,0.0003350367,0.001649132,0.9946978],"study_design_scores_gemma":[0.0002927542,0.000184408,0.0002564452,0.0003949028,0.00002988334,0.00008564701,0.000002450786,0.000006331535,0.00005956927,0.0001291772,0.998251,0.000307413],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0009683805,0.9962732,0.00005972166,0.00002959541,0.0001283024,0.0008885743,0.00005504379,0.00001667904,0.001580497],"genre_scores_gemma":[0.0009302806,0.9949819,0.0001968459,0.00002909591,0.0003115567,0.0002008288,0.00203332,0.00004414658,0.001271956],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9966019,"threshold_uncertainty_score":0.9999471,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2098419540","doi":"10.1186/1476-4598-5-50","title":"Mesothelin-MUC16 binding is a high affinity, N-glycan dependent interaction that facilitates peritoneal metastasis of ovarian tumors","year":2006,"lang":"en","type":"article","venue":"Molecular Cancer","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":443,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"National Institutes of Health; National Cancer Institute; Ovarian Cancer Research Fund; U.S. Department of Defense","keywords":"Mesothelin; Glycoprotein; Biology; MUC1; Recombinant DNA; Mucin; Flow cytometry; Wheat germ agglutinin; Glycan; Cell culture; Cancer research; Molecular biology; Biochemistry; Immunology; Gene; Lectin; Antigen","authors":[{"name":"Jennifer A. A. Gubbels","is_ca":false},{"name":"Jennifer A. Belisle","is_ca":false},{"name":"Masanori Onda","is_ca":false},{"name":"Claudine Rancourt","is_ca":true},{"name":"Martine Migneault","is_ca":true},{"name":"Mitchell Ho","is_ca":false},{"name":"Tapan K. Bera","is_ca":false},{"name":"Joseph P. Connor","is_ca":false},{"name":"Bangalore K. Sathyanarayana","is_ca":false},{"name":"Ira Pastan","is_ca":false},{"name":"Manish S. Patankar","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01910711929575825,"gpt":0.2922255076781251,"spread":0.2731183883823668,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002000925,0.0002047498,0.0002207876,0.000145659,0.00008806376,0.00004768175,0.0002127279,0.0001261847,0.000588968],"category_scores_gemma":[0.00004512,0.0001987751,0.0001685713,0.0001722137,0.00008109368,0.00001181946,0.0001330367,0.000144643,0.00002126038],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007197255,"about_ca_system_score_gemma":0.0001447837,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003981592,"about_ca_topic_score_gemma":0.0007008942,"domain_scores_codex":[0.9984366,0.0001182705,0.0002826428,0.0004262834,0.0004137748,0.0003224661],"domain_scores_gemma":[0.9992074,0.00001038601,0.0001348465,0.0003575857,0.0002063421,0.00008344726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001827187,0.00008668486,0.001869331,0.00004237267,0.0001250644,0.0000207394,0.00006432164,0.0005315781,0.9922462,0.0001751119,0.0009921235,0.003663792],"study_design_scores_gemma":[0.0006618837,0.0001358994,0.001563954,0.00002887992,0.00002916064,0.00001243806,0.0001693408,0.0001094714,0.9819167,0.0001122171,0.01504875,0.000211298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937959,0.0009170431,0.002436398,0.0006769703,0.0001490871,0.000306412,0.0002904187,0.00001657389,0.001411238],"genre_scores_gemma":[0.9972661,0.0001110014,0.0007243296,0.0001923349,0.00009463765,0.00009496498,0.0001795696,0.00003373088,0.001303316],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01405663,"threshold_uncertainty_score":0.8105814,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2018024152","doi":"10.1016/j.molcel.2014.04.026","title":"O-GlcNAcylation Regulates Cancer Metabolism and Survival Stress Signaling via Regulation of the HIF-1 Pathway","year":2014,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":435,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"National Cancer Institute","keywords":"Biology; Unfolded protein response; Endoplasmic reticulum; Cell biology; Cancer cell; Carcinogenesis; GLUT1; Downregulation and upregulation; Signal transduction; Cancer research; Biochemistry; Cancer; Glucose uptake; Endocrinology; Gene; Genetics","authors":[{"name":"Christina M. Ferrer","is_ca":false},{"name":"Thomas P. Lynch","is_ca":false},{"name":"Valerie L. Sodi","is_ca":false},{"name":"John N. Falcone","is_ca":false},{"name":"Luciana P. Schwab","is_ca":false},{"name":"Danielle L. Peacock","is_ca":false},{"name":"David J. Vocadlo","is_ca":true},{"name":"Tiffany N. Seagroves","is_ca":false},{"name":"Mauricio J. Reginato","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006248358607694808,"gpt":0.2262505999479874,"spread":0.2200022413402926,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025299,0.0001167084,0.0001216574,0.00003891859,0.00009019584,0.00002135383,0.0001392042,0.0001130725,0.00003460352],"category_scores_gemma":[0.00005245738,0.00009254377,0.0000736405,0.0001284657,0.00007823007,0.00000501444,0.0001061885,0.00007598758,0.000001705306],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007457363,"about_ca_system_score_gemma":0.00003561677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001060125,"about_ca_topic_score_gemma":0.00004951026,"domain_scores_codex":[0.9989489,0.0001999063,0.0001831361,0.0002505119,0.0002563359,0.0001611889],"domain_scores_gemma":[0.9993474,0.00001224704,0.0001146243,0.0003330932,0.0001406054,0.00005197603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002661696,0.00002014941,0.001430213,0.00003342249,0.00001521632,2.069533e-7,0.00003953869,0.002146779,0.9912857,0.0002735768,0.00001818505,0.004710351],"study_design_scores_gemma":[0.0004092551,0.00003327158,0.01559064,0.00001459924,0.00001441152,6.348261e-7,0.0000116214,0.002649706,0.9761585,0.0003985161,0.004610739,0.0001080916],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871513,0.0009844472,0.01025355,0.000184613,0.0001021624,0.0002339447,0.00001185477,0.000006796789,0.001071345],"genre_scores_gemma":[0.9988183,0.00003219493,0.0003494827,0.0000532725,0.00008063448,0.00001405572,0.000045464,0.00001960575,0.0005870062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01512723,"threshold_uncertainty_score":0.3773825,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981611424","doi":"10.1016/j.immuni.2004.05.004","title":"Heterogeneity among DN1 Prothymocytes Reveals Multiple Progenitors with Different Capacities to Generate T Cell and Non-T Cell Lineages","year":2004,"lang":"en","type":"article","venue":"Immunity","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":416,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Lineage (genetic); Biology; Progenitor cell; Progenitor; Phenotype; T cell; Cell biology; Bone marrow; Stem cell; Cellular differentiation; Immunology; Genetics; Gene; Immune system","authors":[{"name":"Helen E. Porritt","is_ca":false},{"name":"Lynn L. Rumfelt","is_ca":true},{"name":"Sahba Tabrizifard","is_ca":false},{"name":"Thomas M. Schmitt","is_ca":true},{"name":"Juan Carlos Zúñiga‐Pflücker","is_ca":true},{"name":"Howard T. Petrie","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01096922980134055,"gpt":0.2402370571263805,"spread":0.2292678273250399,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001625152,0.0002236688,0.0001801768,0.00006455894,0.0002797757,0.00007424791,0.0001922879,0.0001232747,0.000008147468],"category_scores_gemma":[0.00004757354,0.0001747881,0.00005162072,0.00009632445,0.0001854341,0.000009173348,0.0001885894,0.0001860888,0.00000820745],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002789251,"about_ca_system_score_gemma":0.00006220416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006109365,"about_ca_topic_score_gemma":0.0007825514,"domain_scores_codex":[0.9988739,0.000109463,0.0001872266,0.0003174405,0.0001830605,0.0003289269],"domain_scores_gemma":[0.9991387,0.00001235433,0.00006308869,0.0004382535,0.0001519797,0.0001956447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001675521,0.0001751838,0.06450684,0.00008298625,0.00002389853,0.000004786739,0.0003803943,0.0002836106,0.9341421,8.708043e-7,0.00003452333,0.0001973163],"study_design_scores_gemma":[0.001107524,0.0006525048,0.06151536,0.00002341435,0.000007890609,0.000004958628,0.0001941671,0.00002703737,0.9359006,0.000007298522,0.000334405,0.0002248025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975166,0.0002982592,0.0007892682,0.00005217161,0.00003537362,0.001055758,0.00003719659,0.00001927141,0.0001960896],"genre_scores_gemma":[0.9975086,0.00006510007,0.001340759,0.00006827024,0.00009095759,0.0002215566,0.0000788929,0.00002982826,0.000596054],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002991482,"threshold_uncertainty_score":0.7127652,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2150764734","doi":"10.1074/jbc.m206114200","title":"Structure of the N-Linked Glycan Present on Multiple Glycoproteins in the Gram-negative Bacterium, Campylobacter jejuni","year":2002,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":415,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Steacie Institute for Molecular Sciences; Institute for Biological Sciences","funders":"Health Canada","keywords":"Campylobacter jejuni; Glycan; Campylobacter; Glycoprotein; Microbiology; Bacteria; Gram-negative bacteria; Gram; Biology; Chemistry; Escherichia coli; Biochemistry; Genetics; Gene","authors":[{"name":"N. Martin Young","is_ca":true},{"name":"Jean‐Robert Brisson","is_ca":true},{"name":"John F. Kelly","is_ca":true},{"name":"David C. Watson","is_ca":true},{"name":"Luc Tessier","is_ca":true},{"name":"Patricia Lanthier","is_ca":true},{"name":"Harold C. Jarrell","is_ca":true},{"name":"Nicolas Cadotte","is_ca":true},{"name":"Frank St. Michael","is_ca":true},{"name":"Erika Aberg","is_ca":true},{"name":"Christine M. Szymanski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0281437241950118,"gpt":0.261159935538412,"spread":0.2330162113434002,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002372194,0.000172556,0.0002244008,0.00002537469,0.00006746156,0.00002480779,0.0007022775,0.0002820037,0.00044855],"category_scores_gemma":[0.001038102,0.00008137972,0.0002165197,0.000191222,0.0002392267,0.000005358896,0.0001222956,0.0005600213,0.000002291725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003158671,"about_ca_system_score_gemma":0.00003900315,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001724182,"about_ca_topic_score_gemma":0.00001617224,"domain_scores_codex":[0.9985449,0.0002149522,0.0004375963,0.0002015549,0.0003564093,0.0002445919],"domain_scores_gemma":[0.9989029,0.0001166824,0.0003397907,0.00038458,0.0001789387,0.00007716656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003540017,0.0002572213,0.006393428,0.00002053289,0.00003466798,0.00001120791,0.00007889883,0.00006442548,0.9913632,0.000007520692,0.0006915251,0.0007233692],"study_design_scores_gemma":[0.001198304,0.0005710337,0.03628061,0.00004510246,0.000006861676,0.00009247063,0.0001821101,0.00006030899,0.9513234,0.0001767159,0.00993595,0.0001271189],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973955,0.000165318,0.000009200345,0.001018143,0.0000607393,0.0002580544,0.00004613898,0.000002093127,0.001044882],"genre_scores_gemma":[0.9989904,0.0000944209,0.00009503439,0.0002190534,0.000308834,0.000005943468,0.0000121245,0.000007966473,0.0002661801],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04003979,"threshold_uncertainty_score":0.4911308,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996201718","doi":"10.1038/nrmicro1100","title":"Protein glycosylation in bacterial mucosal pathogens","year":2005,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":406,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"Leverhulme Trust; Biotechnology and Biological Sciences Research Council; Genomic Health","keywords":"Glycosylation; Biology; Glycan; Glycoprotein; Computational biology; Function (biology); Bacteria; Cell biology; Microbiology; Biochemistry; Genetics","authors":[{"name":"Christine M. Szymanski","is_ca":true},{"name":"Brendan W. Wren","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02598730173083069,"gpt":0.3525466581792649,"spread":0.3265593564484342,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001046155,0.0007173534,0.001980725,0.0003644606,0.00006922767,0.00003849804,0.0006496871,0.003335381,0.000368426],"category_scores_gemma":[0.0004393616,0.000561426,0.0007597734,0.0004656954,0.0001058628,0.000006923592,0.0002951574,0.001695121,0.0005725062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001523877,"about_ca_system_score_gemma":0.0004644314,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007172953,"about_ca_topic_score_gemma":0.0002531615,"domain_scores_codex":[0.9954984,0.001358867,0.001255729,0.001111219,0.00009909218,0.0006766985],"domain_scores_gemma":[0.9983271,0.00002897932,0.0005641958,0.0008511069,0.0001066462,0.0001219067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004145603,0.00007987102,0.000002256505,0.003068744,0.00004514997,0.00001149855,0.000003853115,1.953505e-7,0.04219896,0.00005231197,0.002465717,0.95203],"study_design_scores_gemma":[0.0004125175,0.0001386834,0.000002366156,0.002477373,0.00006661496,0.000182784,5.712325e-7,4.826096e-7,0.0003770872,0.000004329296,0.9958069,0.0005302861],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002500046,0.9944375,0.00002566463,0.00005182192,0.0003790338,0.004096759,0.0002562887,0.00001816939,0.0004847975],"genre_scores_gemma":[0.00004474274,0.9880182,0.0009003606,0.0001106721,0.001395314,0.0006414037,0.007497061,0.0000878329,0.001304465],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9933412,"threshold_uncertainty_score":0.9996837,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2150547580","doi":"10.1093/glycob/cwl086","title":"Comparison of the methods for profiling glycoprotein glycans—HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study","year":2007,"lang":"en","type":"article","venue":"Glycobiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":396,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Institute of Materials Research and Engineering","keywords":"Glycomics; Chemistry; Oligosaccharide; Chromatography; Proteome; Glycan; Mass spectrometry; Proteomics; Computational biology; Glycoprotein; Biochemistry; Biology","authors":[{"name":"Yoshinao Wada","is_ca":false},{"name":"Parastoo Azadi","is_ca":false},{"name":"Catherine E. Costello","is_ca":false},{"name":"Anne Dell","is_ca":false},{"name":"Raymond A. Dwek","is_ca":false},{"name":"Hildegard Geyer","is_ca":false},{"name":"Rudolf Geyer","is_ca":false},{"name":"Kazuaki Kakehi","is_ca":false},{"name":"Niclas G. Karlsson","is_ca":false},{"name":"Koichi Kato","is_ca":false},{"name":"Nana Kawasaki","is_ca":false},{"name":"Kay‐Hooi Khoo","is_ca":false},{"name":"Soohyun Kim","is_ca":false},{"name":"Akihiro Kondo","is_ca":false},{"name":"Erika Lattová","is_ca":false},{"name":"Yehia Mechref","is_ca":false},{"name":"Eiji Miyoshi","is_ca":false},{"name":"Kazuyuki Nakamura","is_ca":false},{"name":"Hisashi Narimatsu","is_ca":false},{"name":"Miloš V. Novotný","is_ca":false},{"name":"Nicolle H. Packer","is_ca":false},{"name":"Hélène Perreault","is_ca":true},{"name":"Jasna Peter‐Katalinić","is_ca":false},{"name":"Gottfried Pohlentz","is_ca":false},{"name":"Vernon N. Reinhold","is_ca":false},{"name":"Pauline M. Rudd","is_ca":false},{"name":"Akemi Suzuki","is_ca":false},{"name":"Naoyuki Taniguchi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0971123895309934,"gpt":0.4669018311971809,"spread":0.3697894416661875,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001830601,0.0003296578,0.0004675795,0.0001506106,0.0005305134,0.00002127989,0.0006670894,0.0002750542,0.00003633403],"category_scores_gemma":[0.0011147,0.0002414876,0.0002891483,0.0002937268,0.0005558759,0.0000100881,0.0003936739,0.0003187353,0.000006417375],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007289613,"about_ca_system_score_gemma":0.0003533196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000668076,"about_ca_topic_score_gemma":0.0002679458,"domain_scores_codex":[0.9971849,0.000521451,0.0007848126,0.0006780985,0.0002110985,0.0006195998],"domain_scores_gemma":[0.9981493,0.0001368223,0.000350281,0.0007129239,0.0004509692,0.0001996628],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00184825,0.001055942,0.06416017,0.00007476695,0.0001751582,0.00000364973,0.0002320268,0.0001664161,0.9277687,0.001678806,0.00009579513,0.00274031],"study_design_scores_gemma":[0.004688804,0.001801173,0.0555709,0.00002939289,0.00006615895,0.000009545589,0.000755031,0.0007288298,0.9242703,0.0005400949,0.01111408,0.0004256419],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8414833,0.0003997493,0.1532919,0.0001402726,0.0003853191,0.003912975,0.0001363269,0.00002430207,0.0002258505],"genre_scores_gemma":[0.9659908,0.000004028267,0.03254979,0.0001338195,0.0002519086,0.0004445568,0.0002926463,0.00003375813,0.0002986616],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1245075,"threshold_uncertainty_score":0.9847579,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4220918884","doi":"10.1021/acschembio.1c00689","title":"A Useful Guide to Lectin Binding: Machine-Learning Directed Annotation of 57 Unique Lectin Specificities","year":2022,"lang":"en","type":"article","venue":"ACS Chemical Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":384,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Canada Excellence Research Chairs, Government of Canada","keywords":"Glycan; Glycomics; Computational biology; Lectin; Glycobiology; Biology; Glycome; Biochemistry; Glycoprotein","authors":[{"name":"Daniel Bojar","is_ca":false},{"name":"Lawrence Meche","is_ca":false},{"name":"Guanmin Meng","is_ca":true},{"name":"William Eng","is_ca":false},{"name":"David F. Smith","is_ca":false},{"name":"Richard D. Cummings","is_ca":false},{"name":"Lara K. Mahal","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01626351816336686,"gpt":0.2948567156817715,"spread":0.2785931975184046,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003260433,0.0001405875,0.0001935305,0.000150839,0.0001416031,0.00001064738,0.0002698737,0.0001371431,0.000279768],"category_scores_gemma":[0.0008060603,0.0001433367,0.00007090813,0.0004071665,0.00008432848,0.000002681477,0.0003830791,0.000307489,0.00001332063],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005539953,"about_ca_system_score_gemma":0.00008309309,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001634361,"about_ca_topic_score_gemma":0.00002832589,"domain_scores_codex":[0.9985781,0.0002758156,0.0003037991,0.0003918309,0.0001447777,0.0003057316],"domain_scores_gemma":[0.999378,0.00007055614,0.00010361,0.0002210241,0.0001408896,0.00008593806],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003011459,0.00005631175,0.005273197,0.000007631873,0.00003474315,0.000001951036,0.00008395586,0.00008865113,0.9892024,0.0001514593,0.003336798,0.001461726],"study_design_scores_gemma":[0.0003455437,0.0004468138,0.0002036123,0.000002676945,0.000004368535,0.00001478898,0.000105635,0.00008739814,0.7793144,0.00006433851,0.2192765,0.0001339509],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965713,0.0001496851,0.0004724067,0.000520323,0.000112521,0.0002638671,0.00004028873,0.00004257116,0.001827049],"genre_scores_gemma":[0.9939693,0.00003408479,0.001004501,0.000192778,0.00008645616,0.00009525624,0.000893943,0.00002269007,0.003700959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2159397,"threshold_uncertainty_score":0.58451,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2074332237","doi":"10.1074/jbc.m303810200","title":"Diabetes and the Accompanying Hyperglycemia Impairs Cardiomyocyte Calcium Cycling through Increased Nuclear O-GlcNAcylation","year":2003,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":379,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"National Cancer Institute; National Heart, Lung, and Blood Institute","keywords":"Diabetes mellitus; Calcium; Cycling; Internal medicine; Medicine; Endocrinology; Chemistry; History","authors":[{"name":"Raymond J. Clark","is_ca":false},{"name":"Patrick M. McDonough","is_ca":false},{"name":"Eric A. Swanson","is_ca":false},{"name":"Susanne U. Trost","is_ca":false},{"name":"Misa Suzuki","is_ca":false},{"name":"Minoru Fukuda","is_ca":false},{"name":"Wolfgang Dillmann","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02368753052970638,"gpt":0.2733218387180614,"spread":0.2496343081883551,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007754941,0.0001442572,0.0002621594,0.00001540259,0.0001506768,0.00005333902,0.0001925688,0.0002159143,0.00006136108],"category_scores_gemma":[0.001119153,0.00008516676,0.0001881548,0.00009031939,0.0002719111,0.00001037093,0.00008196403,0.0002992546,0.000002291974],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002196972,"about_ca_system_score_gemma":0.00005662099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005301408,"about_ca_topic_score_gemma":2.234608e-7,"domain_scores_codex":[0.9988441,0.0001860609,0.0003549313,0.0001877857,0.0001900797,0.0002370386],"domain_scores_gemma":[0.9992417,0.00009270608,0.0002206755,0.0001820671,0.0001545147,0.0001083315],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004002491,0.00003693164,0.005557332,0.00002039744,0.0000814696,0.000005761101,0.00003075,0.00004537186,0.9929944,0.0000781934,0.0001767962,0.0005723594],"study_design_scores_gemma":[0.004169844,0.0001610855,0.004295998,0.00003427587,0.00003566746,0.0002106973,0.000401987,0.000170029,0.9667764,0.0007108073,0.02280021,0.000232996],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951475,0.001702719,0.0001774741,0.0001766269,0.00004700804,0.00009876331,0.000003187339,0.000006410579,0.002640336],"genre_scores_gemma":[0.9984763,0.0003595426,0.0006627135,0.0001853732,0.0002499037,0.000003794252,0.000009415114,0.00001107833,0.00004188632],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02621799,"threshold_uncertainty_score":0.3473,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2259804540","doi":"10.1038/ncomms10156","title":"The experimental power of FR900359 to study Gq-regulated biological processes","year":2015,"lang":"en","type":"article","venue":"Nature Communications","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":372,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Research in Immunology and Cancer; Université de Montréal; McGill University Health Centre","funders":"Precursory Research for Embryonic Science and Technology; Core Research for Evolutional Science and Technology; Division of Materials Research; National Cancer Institute; National Institutes of Health; National Institute of General Medical Sciences; Medical Research Council; Università degli Studi di Ferrara; Deutsche Forschungsgemeinschaft; Japan Agency for Medical Research and Development; Biotechnology and Biological Sciences Research Council; Strategiske Forskningsråd","keywords":"Heterotrimeric G protein; Pertussis toxin; Gene isoform; G protein; Gs alpha subunit; Cell biology; G protein-coupled receptor; Chemistry; Biology; Computational biology; Signal transduction; Biochemistry; Gene","authors":[{"name":"Ramona Schrage","is_ca":false},{"name":"Anna-Lena Schmitz","is_ca":false},{"name":"Evelyn Gaffal","is_ca":false},{"name":"Suvi Annala","is_ca":false},{"name":"Stefan Kehraus","is_ca":false},{"name":"Daniela Wenzel","is_ca":false},{"name":"Katrin M. Büllesbach","is_ca":false},{"name":"Tobias Bald","is_ca":false},{"name":"Asuka Inoue","is_ca":false},{"name":"Yuji Shinjo","is_ca":false},{"name":"Ségolène Galandrin","is_ca":false},{"name":"Naveen Shridhar","is_ca":false},{"name":"Michael Hesse","is_ca":false},{"name":"Manuel Grundmann","is_ca":false},{"name":"Nicole Merten","is_ca":false},{"name":"Thomas H. Charpentier","is_ca":false},{"name":"Matthew Martz","is_ca":false},{"name":"Adrian J. Butcher","is_ca":false},{"name":"Tanja Slodczyk","is_ca":false},{"name":"Sylvain Armando","is_ca":true},{"name":"Maike Effern","is_ca":false},{"name":"Yoon Namkung","is_ca":true},{"name":"Laura Jenkins","is_ca":false},{"name":"Velten Horn","is_ca":false},{"name":"Anne Stößel","is_ca":false},{"name":"Harald Dargatz","is_ca":false},{"name":"Daniel Tietze","is_ca":false},{"name":"Diana Imhof","is_ca":false},{"name":"Céline Galès","is_ca":false},{"name":"Christel Drewke","is_ca":false},{"name":"Christa E. Müller","is_ca":false},{"name":"Michael Hölzel","is_ca":false},{"name":"Graeme Milligan","is_ca":false},{"name":"Andrew B. Tobin","is_ca":false},{"name":"Jesús Gomeza","is_ca":false},{"name":"Henrik Dohlman","is_ca":false},{"name":"John Sondek","is_ca":false},{"name":"T. Kendall Harden","is_ca":false},{"name":"Michel Bouvier","is_ca":true},{"name":"Stéphane A. Laporte","is_ca":true},{"name":"Junken Aoki","is_ca":false},{"name":"Bernd K. Fleischmann","is_ca":false},{"name":"Klaus Mohr","is_ca":false},{"name":"Gabriele M. König","is_ca":false},{"name":"Thomas Tüting","is_ca":false},{"name":"Evi Kostenis","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05106921375695327,"gpt":0.3837774808420719,"spread":0.3327082670851186,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003106097,0.00007383148,0.00007282443,0.00002928842,0.0001784961,0.00002154195,0.0008804522,0.0001381144,0.000009035921],"category_scores_gemma":[0.0008225753,0.00004827357,0.00002727208,0.0002702795,0.0001217376,0.000002576151,0.0005499733,0.0002007454,0.00001045334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001177046,"about_ca_system_score_gemma":0.0001052114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000918734,"about_ca_topic_score_gemma":0.0001308423,"domain_scores_codex":[0.9992533,0.0001770592,0.0001490283,0.0001388813,0.0001646215,0.0001171211],"domain_scores_gemma":[0.9982578,0.00004235114,0.00004347912,0.001110026,0.0004609301,0.00008541213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001041973,0.00489628,0.03975458,0.000008823105,0.0003500525,0.000002861146,0.003983728,0.00006010004,0.8995954,0.003122567,0.04260089,0.004582764],"study_design_scores_gemma":[0.001283665,0.002143981,0.02390932,0.000009508607,0.000009409152,0.000008114329,0.00914026,0.00003070016,0.4990665,0.00009173106,0.4640566,0.0002501911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885504,0.006635834,0.00002947164,0.001815477,0.00004609918,0.0005655468,0.00001030554,0.00001240497,0.002334484],"genre_scores_gemma":[0.998681,0.00006787228,0.0007077187,0.0001319413,0.00001673029,0.0001019813,0.00005046238,0.000007430013,0.0002348724],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4214557,"threshold_uncertainty_score":0.1968539,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2052954694","doi":"10.1074/jbc.m413819200","title":"O-GlcNAcase Uses Substrate-assisted Catalysis","year":2005,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":367,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Simon Fraser University; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Substrate (aquarium); Catalysis; Chemistry; Biology; Organic chemistry; Ecology","authors":[{"name":"Matthew S. Macauley","is_ca":true},{"name":"Garrett E. Whitworth","is_ca":true},{"name":"Aleksandra W. Debowski","is_ca":true},{"name":"Danielle Chin","is_ca":true},{"name":"David J. Vocadlo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.035519125693949,"gpt":0.3008726505804735,"spread":0.2653535248865245,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003146965,0.0001376892,0.0002043096,0.00002972173,0.00005834129,0.00003173078,0.0002929989,0.0002568198,0.0004864273],"category_scores_gemma":[0.0003745475,0.00009720209,0.0002228423,0.0001219584,0.0001154895,0.00000671208,0.00007339315,0.0002370301,0.00002178857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002861474,"about_ca_system_score_gemma":0.00009432928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002995498,"about_ca_topic_score_gemma":0.000004056548,"domain_scores_codex":[0.9989105,0.00004798148,0.0004093843,0.0001903581,0.0002132095,0.000228512],"domain_scores_gemma":[0.9990922,0.00002188924,0.0002228084,0.0002082627,0.0002565243,0.0001983648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002004947,0.0001662254,0.003667569,0.000009855225,0.0000582999,0.00003517422,0.000004311467,0.00004256818,0.9895915,0.000004099842,0.001529688,0.004690167],"study_design_scores_gemma":[0.0005616765,0.0001984235,0.004969553,0.000009573529,0.00001188535,0.0004136463,0.00004696654,0.00001636056,0.9335235,0.00002218625,0.06009424,0.0001319489],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957666,0.000912492,0.0001810547,0.0004123316,0.00002814672,0.00004517815,0.000009033281,0.000006525181,0.002638611],"genre_scores_gemma":[0.9971199,0.0002923355,0.0009598532,0.0001467214,0.0005922644,0.000003108403,0.00005078736,0.000008387735,0.000826627],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05856455,"threshold_uncertainty_score":0.5326038,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2049905838","doi":"10.1016/s0959-440x(00)00124-x","title":"Glycosyltransferase structure and mechanism","year":2000,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":360,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Guilin Medical University","keywords":"Glycosyltransferase; Bacillus subtilis; Galactosyltransferase; Escherichia coli; Mechanism (biology); Glucosyltransferase; Biology; Computational biology; Biochemistry; Chemistry; Genetics; Enzyme; Bacteria; Gene","authors":[{"name":"Uluğ M Ünligil","is_ca":false},{"name":"James M. Rini","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0525129088646871,"gpt":0.3972642617339804,"spread":0.3447513528692933,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001086107,0.0005178736,0.0008734064,0.0002764965,0.00008768751,0.00003750732,0.0003583726,0.0007642951,0.0003384365],"category_scores_gemma":[0.00005337942,0.0004013292,0.0002061891,0.0002276677,0.0001727567,0.000005200397,0.0001610306,0.0006244446,0.00001577106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003503264,"about_ca_system_score_gemma":0.0001885625,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001494239,"about_ca_topic_score_gemma":0.00001107139,"domain_scores_codex":[0.9976084,0.0003517193,0.0005690389,0.0008665803,0.0001223243,0.0004819665],"domain_scores_gemma":[0.9992418,0.00003032352,0.000119773,0.0004131465,0.00004199344,0.0001529118],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003536914,0.000007709078,0.00002909506,0.002849897,0.00003396181,6.752912e-7,0.000009990976,4.867015e-7,0.0001417231,0.001556634,0.0001454863,0.995189],"study_design_scores_gemma":[0.0004598876,0.0001675066,0.0000207544,0.001002491,0.00002150438,0.0001006007,0.000002415769,0.000009573047,0.00006609279,0.001288021,0.9964221,0.0004390645],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001673348,0.9947077,0.00002926031,0.00001867809,0.001984837,0.0008853022,0.0006375206,0.00001525178,0.00004812138],"genre_scores_gemma":[0.001851705,0.9926738,0.00007760828,0.00001063688,0.0007184707,0.00007146289,0.004516279,0.00004052935,0.0000394692],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9962766,"threshold_uncertainty_score":0.9998438,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2059725389","doi":"10.1073/pnas.1010045108","title":"Metabolic cross-talk allows labeling of O-linked β- <i>N</i> -acetylglucosamine-modified proteins via the <i>N</i> -acetylgalactosamine salvage pathway","year":2011,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":356,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health; Simon Fraser University; Howard Hughes Medical Institute; National Defense Science and Engineering Graduate; Life Sciences Research Foundation; U.S. Department of Defense","keywords":"Bioorthogonal chemistry; Biochemistry; N-Acetylglucosamine; Chemistry; Metabolic pathway; Proteomics; Enzyme; Covalent bond; Nucleotide sugar; Glycosyltransferase; Acetylglucosamine; Glycosylation; Click chemistry; Combinatorial chemistry","authors":[{"name":"Michael Boyce","is_ca":false},{"name":"Isaac S. Carrico","is_ca":false},{"name":"Anjali S. Ganguli","is_ca":false},{"name":"Seok‐Ho Yu","is_ca":false},{"name":"Matthew J. Hangauer","is_ca":false},{"name":"S C Hubbard","is_ca":false},{"name":"Jennifer J. Kohler","is_ca":false},{"name":"Carolyn R. Bertozzi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05034939685429302,"gpt":0.3097664719889435,"spread":0.2594170751346505,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001915962,0.0001625533,0.000222809,0.0001078535,0.0002341023,0.00002518816,0.001290034,0.0001650614,0.00002467715],"category_scores_gemma":[0.0007335091,0.00009706504,0.0001654407,0.0006884534,0.001339192,0.00004767013,0.0003436688,0.0002164594,0.000001276907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008839795,"about_ca_system_score_gemma":0.00008295752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004155829,"about_ca_topic_score_gemma":0.000001189443,"domain_scores_codex":[0.9976949,0.00002593863,0.0005254078,0.000344749,0.00114575,0.0002632518],"domain_scores_gemma":[0.998637,0.00003804926,0.0005855468,0.00004216195,0.0006418687,0.00005541748],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008465558,0.00009005916,0.001956649,0.00004919438,0.00003520178,1.007345e-8,0.0001366785,0.00004228183,0.9913467,0.005679014,0.00007406363,0.0005055105],"study_design_scores_gemma":[0.0004077281,0.0001345992,0.01669728,0.00003113986,0.000009808183,0.00000771128,0.00007111309,0.0003618741,0.9785046,0.001924014,0.001741118,0.0001090158],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911096,0.0005836988,0.00003503448,0.0007111218,0.00002396152,0.000616188,0.00003795438,0.000008222252,0.006874197],"genre_scores_gemma":[0.9968446,0.0001001739,0.002249445,0.0002923158,0.00008513052,0.00005153716,0.000001713267,0.00001098002,0.0003641006],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01474063,"threshold_uncertainty_score":0.4934308,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088221752","doi":"10.1038/sj.emboj.7601087","title":"Definition of the bacterial N‐glycosylation site consensus sequence","year":2006,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":350,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"Functional Genomics Center Zurich; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Consensus sequence; Glycosylation; Sequence (biology); Computational biology; Bacterial protein; Genetics; Peptide sequence; Sequence alignment; Bacteria; Gene","authors":[{"name":"Michael Kowarik","is_ca":false},{"name":"N. Martin Young","is_ca":true},{"name":"Shin Numao","is_ca":false},{"name":"Benjamin L. Schulz","is_ca":false},{"name":"Isabelle Hug","is_ca":false},{"name":"Nico Callewaert","is_ca":false},{"name":"Dominic C. Mills","is_ca":false},{"name":"David C. Watson","is_ca":true},{"name":"Marcela Hernandez","is_ca":false},{"name":"John F. Kelly","is_ca":true},{"name":"Michael Wacker","is_ca":false},{"name":"Markus Aebi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02568403428997034,"gpt":0.2684488093606928,"spread":0.2427647750707224,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004006917,0.00006658719,0.00006112922,0.00002309208,0.0002137085,0.00003736713,0.0001743242,0.00005052938,0.0001085225],"category_scores_gemma":[0.0001068711,0.00003790721,0.00008297042,0.00008875601,0.0001255296,0.000002883595,0.00005376927,0.0001482122,0.00001376136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001429181,"about_ca_system_score_gemma":0.0001047125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006044288,"about_ca_topic_score_gemma":0.00006475498,"domain_scores_codex":[0.9991716,0.0001843034,0.0002033445,0.00008276578,0.0002203443,0.0001376206],"domain_scores_gemma":[0.9994364,0.0000189956,0.0001526258,0.000204156,0.0001613566,0.00002647428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001133352,0.00001843824,0.001316455,0.000003317472,0.000009732125,0.000001673841,0.00001989272,0.0001189782,0.9954153,0.0009958295,0.001565117,0.0004218978],"study_design_scores_gemma":[0.001505207,0.0002401954,0.05365551,0.0000417706,0.00003039694,0.0008865938,0.00005240506,0.0002832952,0.8995405,0.01632627,0.02724194,0.0001958884],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941875,0.0001040248,0.0002811697,0.0008963739,0.0001942158,0.0001177319,0.00001752079,0.000002713388,0.004198769],"genre_scores_gemma":[0.9987375,0.00002690778,0.0003504772,0.00006218031,0.000477746,0.000002670858,0.00002496405,0.000007267302,0.0003103519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0958748,"threshold_uncertainty_score":0.1643695,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1998906741","doi":"10.1038/nchembio.520","title":"Hijacking a biosynthetic pathway yields a glycosyltransferase inhibitor within cells","year":2011,"lang":"en","type":"article","venue":"Nature Chemical Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":320,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Wellcome Trust","keywords":"Glycosyltransferase; Nucleotide sugar; Biochemistry; Glycoconjugate; Enzyme; Biosynthesis; Glycobiology; Rational design; In vitro; Nucleotide; Transferase; Glycosylation; Chemistry; N-Acetylglucosamine; Biology; Glycoprotein; Gene; Glycan; Genetics","authors":[{"name":"T.M. Gloster","is_ca":true},{"name":"Wesley F. Zandberg","is_ca":true},{"name":"Julia Heinonen","is_ca":true},{"name":"David L. Shen","is_ca":true},{"name":"David J. Vocadlo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01498961539710756,"gpt":0.2557608305778609,"spread":0.2407712151807533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002392501,0.0002557288,0.0002285765,0.00008720714,0.00006817046,0.0000156732,0.0003892527,0.001364569,0.0003077023],"category_scores_gemma":[0.0002903305,0.0002128879,0.0001564385,0.0001872736,0.0002353705,0.00000457209,0.0001514401,0.0007705329,0.00007831204],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002168795,"about_ca_system_score_gemma":0.0001055755,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002163897,"about_ca_topic_score_gemma":0.0000178277,"domain_scores_codex":[0.9983485,0.0001004056,0.0003034102,0.0006286137,0.0001448906,0.0004741973],"domain_scores_gemma":[0.9991108,0.00002972562,0.00006488473,0.0004448183,0.000142699,0.000207125],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000330533,0.0001197017,0.0002946139,0.00001819214,0.00003560437,0.00001173999,0.000083935,2.99223e-7,0.9951944,0.0008368963,0.0004556414,0.002618476],"study_design_scores_gemma":[0.0005828887,0.0002891709,0.00003259214,0.00001550483,0.000008001419,0.00002736552,0.00002487089,0.00001775841,0.9715508,0.0004725063,0.02671274,0.0002658588],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933974,0.0007512337,0.0005687083,0.0002022813,0.0004068198,0.0003147466,0.00006152529,0.00004853215,0.004248755],"genre_scores_gemma":[0.9966294,0.00005347975,0.001775722,0.0007543277,0.0003363971,0.0000395251,0.0001663513,0.00003207461,0.0002126912],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0262571,"threshold_uncertainty_score":0.9999319,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1512847790","doi":"10.1016/s0065-2318(10)63006-5","title":"Design and Creativity in Synthesis of Multivalent Neoglycoconjugates","year":2010,"lang":"en","type":"review","venue":"Advances in carbohydrate chemistry and biochemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":312,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Chemistry; Synthon; Glycobiology; Porphyrin; Nanotechnology; Glycan; Stereochemistry; Polymer science; Combinatorial chemistry; Organic chemistry; Biochemistry","authors":[{"name":"Yoann M. Chabre","is_ca":true},{"name":"René Roy","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01837771048636925,"gpt":0.3209967198536775,"spread":0.3026190093673082,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004457885,0.0004874927,0.0009911736,0.00006282166,0.00004014042,0.00002702964,0.0002833881,0.0008651501,0.00001939193],"category_scores_gemma":[0.0005218989,0.000445664,0.0001249772,0.0002528024,0.0004401056,0.00001361926,0.0002479521,0.000586851,6.198562e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003503242,"about_ca_system_score_gemma":0.0002311214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001560553,"about_ca_topic_score_gemma":0.000009987405,"domain_scores_codex":[0.9978712,0.0001187823,0.0006336565,0.00083629,0.0001744661,0.0003655608],"domain_scores_gemma":[0.99879,0.0002383556,0.0002968428,0.0004732784,0.00006150284,0.0001400025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009077608,0.0001399023,0.0002213002,0.01744743,0.00003860965,0.00002752602,0.00001547241,0.00001709428,0.4245187,0.000001438885,0.000004499555,0.5574773],"study_design_scores_gemma":[0.0004317416,0.00003857901,0.000005654478,0.00405728,0.00006127833,0.00005017726,0.00003747669,0.0001126911,0.8554556,0.00003814158,0.1391448,0.0005666204],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.02593966,0.9726514,0.00003102362,0.0000103664,0.00002918376,0.0004867043,0.00006523619,0.000007507433,0.0007789708],"genre_scores_gemma":[0.02170618,0.9767057,0.0008258189,0.000003854926,0.00007966849,0.0002805889,0.0001249398,0.0000380991,0.0002351237],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.5569107,"threshold_uncertainty_score":0.9997995,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2895500801","doi":"10.1146/annurev-cellbio-100617-062818","title":"Mucins and Their Role in Shaping the Functions of Mucus Barriers","year":2018,"lang":"en","type":"review","venue":"Annual Review of Cell and Developmental Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":307,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Division of Materials Research; National Institute of Biomedical Imaging and Bioengineering; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Mucin; Mucus; Biology; Glycoprotein; Microscale chemistry; Cell biology; Glycosylation; Glycan; Biochemistry; Ecology","authors":[{"name":"Caroline E. Wagner","is_ca":false},{"name":"Kelsey M. Wheeler","is_ca":false},{"name":"Katharina Ribbeck","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02116997538275478,"gpt":0.308132847442364,"spread":0.2869628720596092,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000516072,0.000214096,0.0006999458,0.00008217191,0.0000604359,0.000004141667,0.0001791445,0.0002072387,0.00005576681],"category_scores_gemma":[0.0001797312,0.0001219473,0.0001233973,0.0001701488,0.000339551,0.000003444743,0.0002854877,0.0001359273,0.000006399605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001049083,"about_ca_system_score_gemma":0.000297126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002932864,"about_ca_topic_score_gemma":0.00003569837,"domain_scores_codex":[0.9986969,0.0002226269,0.0005285479,0.000311657,0.00005626604,0.0001840082],"domain_scores_gemma":[0.9994106,0.00006056341,0.0002063774,0.0001670669,0.00008943227,0.0000659054],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001648143,0.00003057232,0.0001296655,0.02348468,0.00009891238,6.267124e-7,0.000191807,7.689054e-9,0.001757824,0.00004092411,0.000980439,0.973268],"study_design_scores_gemma":[0.0001196105,0.000168604,0.00002527613,0.004918684,0.00002612163,0.00002568847,0.000330103,2.991074e-7,0.00102748,0.0000164594,0.9932083,0.0001333429],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001435668,0.9957402,0.000009490634,0.00002624102,0.00003992202,0.0005505871,0.0001534401,0.000001742736,0.002042742],"genre_scores_gemma":[0.002576681,0.9965937,0.00008477836,0.0001374411,0.00003219174,0.00005722576,0.0002517651,0.00001156252,0.0002546543],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9922279,"threshold_uncertainty_score":0.4972867,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2033232429","doi":"10.1074/jbc.m204257200","title":"Designing Heterodimeric Two-stranded α-Helical Coiled-coils","year":2002,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":299,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Coiled coil; Computer science; Computational biology; Biophysics; Biology","authors":[{"name":"Jennifer R. Litowski","is_ca":true},{"name":"Robert S. Hodges","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04407178430401613,"gpt":0.2919134824922779,"spread":0.2478416981882618,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003578954,0.0001629523,0.0002475484,0.00002632206,0.0000718302,0.00003561492,0.0003145339,0.0002463461,0.001112976],"category_scores_gemma":[0.0004410027,0.0001168364,0.0002256641,0.000111439,0.0001501207,0.000005811154,0.00007281078,0.0003544423,0.00003230768],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000203855,"about_ca_system_score_gemma":0.00002989657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001033593,"about_ca_topic_score_gemma":2.310685e-7,"domain_scores_codex":[0.9986885,0.00009191214,0.0004350656,0.0002279345,0.000254274,0.0003023721],"domain_scores_gemma":[0.9991257,0.00003893791,0.0002130541,0.0001964805,0.000194498,0.0002313278],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001563968,0.0001246632,0.001042033,0.00001181076,0.00004162835,0.00004298968,0.00001009573,0.00003782941,0.9942661,0.000001723074,0.00182304,0.002441724],"study_design_scores_gemma":[0.001289247,0.0004572056,0.0004959962,0.00001901293,0.000009116118,0.0004715554,0.00004340624,0.00009364181,0.981837,0.00005394816,0.01505549,0.0001743514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920977,0.00113146,0.001574481,0.0002530564,0.00005867166,0.00007238411,0.000005501477,0.000009394299,0.004797339],"genre_scores_gemma":[0.9965628,0.0004224762,0.001555594,0.0001820289,0.000515676,0.000004419715,0.00001354066,0.00001090564,0.0007325849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01323245,"threshold_uncertainty_score":0.9998001,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1922826048","doi":"10.1046/j.1365-2958.2003.03527.x","title":"Structural, genetic and functional characterization of the flagellin glycosylation process in <i>Helicobacter pylori</i>","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":296,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Canada; Caprion (Canada); Université de Montréal","funders":"","keywords":"Flagellin; Biology; Glycosylation; Biochemistry; Flagellum; Mutant; Nucleotide sugar; Campylobacter jejuni; Gene; Biosynthesis; Genetics; Bacteria","authors":[{"name":"Michael Schirm","is_ca":true},{"name":"Evelyn C. Soo","is_ca":false},{"name":"Annie Aubry","is_ca":false},{"name":"John W. Austin","is_ca":true},{"name":"Pierre Thibault","is_ca":true},{"name":"Susan M. Logan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007320826407017722,"gpt":0.2231389210988326,"spread":0.2158180946918148,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001144723,0.0001162623,0.0001108157,0.00006069677,0.0000487933,0.00001032569,0.00009175338,0.0001587933,0.00004720006],"category_scores_gemma":[0.00007089551,0.00009274143,0.00004315921,0.0001631492,0.0001148454,0.000004387648,0.00004608767,0.00009827688,0.000003055811],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001059697,"about_ca_system_score_gemma":0.00006563933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000607137,"about_ca_topic_score_gemma":0.00001939939,"domain_scores_codex":[0.9990742,0.0001905181,0.000220538,0.0002744686,0.00006145572,0.0001787693],"domain_scores_gemma":[0.9995664,0.000005588539,0.00008806575,0.0002103577,0.0001004425,0.00002919687],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004549231,0.00001509395,0.01345994,0.00001754714,0.00001133867,0.000001072849,0.00002427478,0.0001463597,0.9858804,0.0001276477,0.000006987588,0.0002637901],"study_design_scores_gemma":[0.0005459864,0.00006418464,0.06310713,0.000007997076,0.000004900176,0.00005229383,0.000007441075,0.00006169042,0.9315705,0.0001017607,0.004370942,0.0001051636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978743,0.0002117801,0.001263429,0.0001036418,0.00009896976,0.0003141029,0.00001861832,0.000003310836,0.0001118344],"genre_scores_gemma":[0.999329,0.00003502698,0.0001098046,0.0002044796,0.00002016417,0.00001979577,0.0001709384,0.00001327102,0.00009751157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05430995,"threshold_uncertainty_score":0.3781886,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2104257202","doi":"10.1128/mcb.22.20.7279-7290.2002","title":"Endosomal Signaling of Epidermal Growth Factor Receptor Stimulates Signal Transduction Pathways Leading to Cell Survival","year":2002,"lang":"en","type":"article","venue":"Molecular and Cellular Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":296,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research","keywords":"Biology; Signal transduction; Endosome; Cell biology; Epidermal growth factor receptor; Epidermal growth factor; Receptor; Cancer research; Genetics; Intracellular","authors":[{"name":"Yi Wang","is_ca":true},{"name":"Steven Pennock","is_ca":true},{"name":"Xinmei Chen","is_ca":true},{"name":"Zhixiang Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02244300409465842,"gpt":0.2431740739913547,"spread":0.2207310698966963,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001899081,0.0002236531,0.0002765551,0.0001314619,0.00009852492,0.00001951361,0.0001666677,0.0002492088,0.00051719],"category_scores_gemma":[0.00006373318,0.0002183774,0.0001391396,0.0001520995,0.0001160719,0.000006195046,0.00008517956,0.0001457536,0.00003238785],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001068019,"about_ca_system_score_gemma":0.00002130402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002651271,"about_ca_topic_score_gemma":0.000002849916,"domain_scores_codex":[0.9983755,0.000248605,0.0003196605,0.0004987558,0.0001531519,0.0004043309],"domain_scores_gemma":[0.9993688,0.00002670319,0.00007562754,0.0002101588,0.0001326987,0.0001859749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008469389,0.00007892975,0.001162288,0.00004588102,0.00003963214,0.00001054654,0.000126445,0.000146638,0.9956567,0.0002086959,0.00003984044,0.002399729],"study_design_scores_gemma":[0.0006550336,0.0007576131,0.00005395032,0.000009440128,0.00001241661,0.000008345341,0.0000518854,0.0002796124,0.9954548,0.000064689,0.002414024,0.0002381122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9586832,0.001459569,0.03870968,0.0001336204,0.0001078694,0.000297853,0.00005541476,0.00001561758,0.0005372047],"genre_scores_gemma":[0.9982185,0.00008204059,0.001062033,0.00008968746,0.0001157888,0.00001881496,0.0001464657,0.00003017239,0.0002364846],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03953534,"threshold_uncertainty_score":0.8905171,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2080462728","doi":"10.1021/acschembio.5b00004","title":"A Small Molecule That Inhibits OGT Activity in Cells","year":2015,"lang":"en","type":"article","venue":"ACS Chemical Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":290,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Center for Advancing Translational Sciences; National Cancer Institute; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada","keywords":"Glycosyltransferase; Small molecule; Transferase; Kinase; Intracellular; Chemical biology; High-throughput screening; Biochemistry; Glycan; Phosphatase; Cytoplasm; Enzyme; Cell biology; Drug discovery; Biology; Chemistry; Cell; Glycoprotein","authors":[{"name":"Rodrigo F. Ortiz‐Meoz","is_ca":false},{"name":"Jiaoyang Jiang","is_ca":false},{"name":"Michael B. Lazarus","is_ca":false},{"name":"Marina Orman","is_ca":false},{"name":"John Janetzko","is_ca":false},{"name":"Chenguang Fan","is_ca":false},{"name":"Damien Duveau","is_ca":false},{"name":"Zhi-Wei Tan","is_ca":false},{"name":"Craig J. Thomas","is_ca":false},{"name":"Suzanne Walker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05065461219914576,"gpt":0.2928942514653514,"spread":0.2422396392662056,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002385291,0.0001441383,0.000167087,0.0000583283,0.00001706377,0.00001197721,0.000230956,0.0003561593,0.00002030208],"category_scores_gemma":[0.0002330828,0.0001307671,0.00005162234,0.000135687,0.0001279719,0.000003099583,0.0002726747,0.0002061144,0.00007147487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000325001,"about_ca_system_score_gemma":0.0001039691,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008903466,"about_ca_topic_score_gemma":0.00006056329,"domain_scores_codex":[0.9988828,0.0001105957,0.0001372823,0.0004058069,0.00009012021,0.00037337],"domain_scores_gemma":[0.9993921,0.00002053886,0.00004354644,0.0002933715,0.00007367972,0.0001767924],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001813271,0.0000917725,0.002194883,0.000005681011,0.000009366582,0.000004773289,0.00001980251,0.000002631117,0.9943975,0.0000486514,0.000776978,0.002266613],"study_design_scores_gemma":[0.0009313737,0.0001546383,0.0001598709,0.000003982625,0.000001851567,0.000007242858,0.00001602945,0.000034628,0.9838863,0.0001825834,0.01446791,0.0001536023],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995917,0.0001932829,0.0002436745,0.0003962945,0.00006475615,0.0001972485,0.0000121945,0.00001405936,0.002961461],"genre_scores_gemma":[0.9987242,0.00004000993,0.0002913207,0.0003255557,0.00009268929,0.00003857397,0.0001115348,0.00001455581,0.0003615685],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01369093,"threshold_uncertainty_score":0.5332528,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1977272323","doi":"10.1038/415447a","title":"Translocation of lipid-linked oligosaccharides across the ER membrane requires Rft1 protein","year":2002,"lang":"en","type":"article","venue":"Nature","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":288,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Endoplasmic reticulum; Oligosaccharide; Membrane protein; Cytoplasm; Chemistry; Biochemistry; Transmembrane protein; Unfolded protein response; Translocon; Cell biology; Glycosylation; Membrane; Biology; Receptor","authors":[{"name":"Jonne Helenius","is_ca":false},{"name":"Davis Ng","is_ca":false},{"name":"Cristina L. Marolda","is_ca":true},{"name":"Peter Walter","is_ca":false},{"name":"Miguel A. Valvano","is_ca":true},{"name":"Markus Aebi","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01666982972021492,"gpt":0.2966893360084997,"spread":0.2800195062882848,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002580184,0.0001065212,0.0001009798,0.00002542333,0.0001125262,0.0000251464,0.0002821403,0.0007018739,0.0001976019],"category_scores_gemma":[0.0001944469,0.00007306396,0.00008181957,0.0001728853,0.0001106554,0.000006254767,0.00004306288,0.0005946002,0.00001872644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006697223,"about_ca_system_score_gemma":0.00002238531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000191433,"about_ca_topic_score_gemma":0.00006768094,"domain_scores_codex":[0.9990582,0.00006845618,0.0001772284,0.0002186847,0.0002669945,0.0002103934],"domain_scores_gemma":[0.9993359,0.00001136048,0.00006476205,0.0003699911,0.0001745339,0.00004339364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006875978,0.00004909468,0.00006896591,0.00003668842,0.0000248743,9.008291e-7,0.0002236183,0.00002203633,0.9883629,0.0002601081,0.002228656,0.008653373],"study_design_scores_gemma":[0.0004420516,0.00009464202,0.0006150014,0.00002225935,0.000003182239,0.000005175322,0.00006920969,0.0002550548,0.9286827,0.00005695883,0.06965953,0.00009419105],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909535,0.003144559,0.0001341387,0.003886197,0.0000805014,0.0005474057,0.00004565081,0.00001348565,0.001194534],"genre_scores_gemma":[0.9956698,0.0002703728,0.0001810618,0.0003207953,0.0002478006,0.00005275165,0.00004617723,0.0000141743,0.003197061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06743088,"threshold_uncertainty_score":0.5413494,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091399531","doi":"10.1097/00062752-200301000-00004","title":"Structure, organization, and function of glycosphingolipids in membrane","year":2003,"lang":"en","type":"review","venue":"Current Opinion in Hematology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":280,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"International Union of Biochemistry and Molecular Biology","funders":"","keywords":"Glycosphingolipid; Cell biology; Signal transduction; Ceramide; Cell adhesion; Glycosylation; Biology; Cell; Chemistry; Biochemistry; Apoptosis","authors":[{"name":"Sen‐itiroh Hakomori","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04680215422594385,"gpt":0.3643914423895213,"spread":0.3175892881635774,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001738975,0.0002377107,0.0007642594,0.0003550329,0.00002258113,0.000009459854,0.000147513,0.0004483789,0.00008859067],"category_scores_gemma":[0.0002773902,0.0002212364,0.0000624534,0.0005848876,0.00008680877,0.000004343159,0.0001063487,0.000280603,0.000004534963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002424707,"about_ca_system_score_gemma":0.0002311803,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005181469,"about_ca_topic_score_gemma":0.00001124982,"domain_scores_codex":[0.9983162,0.0002562549,0.0006512944,0.0004364293,0.0001197844,0.0002200834],"domain_scores_gemma":[0.9992949,0.00003353159,0.0002289251,0.0002831941,0.0001062569,0.00005320791],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001031923,0.0004548366,0.007904507,0.106337,0.000137066,0.000003080871,0.00009156684,0.0000217027,0.000395667,0.0215382,0.001994827,0.8610184],"study_design_scores_gemma":[0.0005489389,0.00007552639,0.00008539612,0.00193683,0.00001580785,0.00009678718,0.000006556427,0.000005318647,0.0003250714,0.0001146227,0.9965752,0.0002139666],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0008675152,0.9970075,0.0002051283,0.000006928022,0.001262876,0.0005784337,0.00002751074,0.000004590436,0.00003946387],"genre_scores_gemma":[0.001696894,0.9971336,0.00004764633,0.000003877049,0.00009616175,0.0000374872,0.0009333831,0.00003083586,0.00002015363],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9945803,"threshold_uncertainty_score":0.902176,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2169499352","doi":"10.1093/emboj/19.20.5269","title":"X‐ray crystal structure of rabbit N‐acetylglucosaminyltransferase I: catalytic mechanism and a new protein superfamily","year":2000,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":275,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; Muscular Dystrophy Canada; University of Toronto","funders":"National Center for Research Resources; Division of Materials Research; University of Toronto; National Institutes of Health; National Science Foundation","keywords":"Biology; Bacillus subtilis; Transferase; Threading (protein sequence); Glycosyltransferase; Biochemistry; Glycan; Escherichia coli; Protein domain; Peptide sequence; Protein structure; Sequence alignment; Aquifex aeolicus; Enzyme; Genetics; Glycoprotein; Gene; Bacteria","authors":[{"name":"Uluğ M Ünligil","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01108431246152111,"gpt":0.2385490957429853,"spread":0.2274647832814642,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001979943,0.0001342238,0.0001367883,0.0000435896,0.000163614,0.00005428792,0.0002364473,0.0000881797,0.0007783466],"category_scores_gemma":[0.00004088432,0.00009001641,0.00007339107,0.00009155511,0.00009102195,0.000008325127,0.00003408174,0.0002787982,0.000006762951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009634836,"about_ca_system_score_gemma":0.000187088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000568448,"about_ca_topic_score_gemma":0.00003436577,"domain_scores_codex":[0.9990162,0.00009730485,0.0002214793,0.0001651454,0.0002604488,0.0002393987],"domain_scores_gemma":[0.9994642,0.000007484893,0.0000425003,0.0002402614,0.00007234931,0.0001732126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000237994,0.0000200964,0.00002903869,0.00001417053,0.00004597806,0.000007069822,0.0001711271,0.00006256562,0.9927115,0.000236369,0.0004112539,0.006052878],"study_design_scores_gemma":[0.001665033,0.0005152714,0.0007068643,0.00004000726,0.00002482806,0.0006486223,0.0001251977,0.0001346121,0.9826703,0.003743416,0.009549749,0.0001760843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970677,0.0008241981,0.0007939445,0.0005591759,0.0000306767,0.0002849724,0.00002432241,0.00000419567,0.0004107549],"genre_scores_gemma":[0.9961611,0.0002494216,0.0004904085,0.0001087053,0.0002451513,0.000002386346,0.00001642824,0.00001756214,0.002708859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01004115,"threshold_uncertainty_score":0.8522349,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2071221371","doi":"10.1074/jbc.275.6.3896","title":"Biosynthesis of Ganglioside Mimics in Campylobacter jejuni OH4384","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":260,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Campylobacter jejuni; Open reading frame; Glycosyltransferase; Biosynthesis; Biology; Gene; Sialyltransferase; Galactosyltransferase; Biochemistry; Escherichia coli; Sialic acid; Sialidase; Peptide sequence; Molecular biology; Genetics; Bacteria; Neuraminidase; Enzyme","authors":[{"name":"Michel Gilbert","is_ca":true},{"name":"Jean‐Robert Brisson","is_ca":true},{"name":"Marie-France Karwaski","is_ca":true},{"name":"J.J. Michniewicz","is_ca":true},{"name":"Anna‐Maria Cunningham","is_ca":true},{"name":"Yuyang Wu","is_ca":true},{"name":"N. Martin Young","is_ca":true},{"name":"Warren W. Wakarchuk","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01641981438728375,"gpt":0.2620971554023026,"spread":0.2456773410150188,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003327895,0.000114765,0.0002322161,0.00003813495,0.00001754819,0.000009627001,0.0002701483,0.0002658785,0.001387381],"category_scores_gemma":[0.0003216465,0.00008323175,0.0001581971,0.0001381961,0.0001202066,0.000004146059,0.00004190693,0.0002017649,0.000006485133],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000190235,"about_ca_system_score_gemma":0.00006837412,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005717341,"about_ca_topic_score_gemma":0.000002432757,"domain_scores_codex":[0.9989632,0.00005855929,0.0004639707,0.0001526996,0.0001620648,0.0001995109],"domain_scores_gemma":[0.999393,0.00003239041,0.0001633823,0.0001777089,0.0001307153,0.0001028409],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003897135,0.0001914707,0.006936627,0.0000215362,0.00002627778,0.00002750875,0.000009021132,0.00002933238,0.9876453,0.000002921748,0.000277226,0.004443063],"study_design_scores_gemma":[0.0005222671,0.0002422931,0.005608965,0.00003546316,0.000004893551,0.000100217,0.0000443904,0.00001100386,0.980548,0.00009576296,0.01268265,0.0001040641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943896,0.0004810353,0.00001562772,0.0001667477,0.00001816679,0.00005035362,0.00001200636,0.00000216508,0.004864329],"genre_scores_gemma":[0.9982023,0.0006338484,0.0004259255,0.00008372654,0.0001482068,0.000001719694,0.00001239764,0.000006969877,0.0004849407],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01240543,"threshold_uncertainty_score":0.9995255,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2125841023","doi":"10.1074/jbc.m512191200","title":"EDEM3, a Soluble EDEM Homolog, Enhances Glycoprotein Endoplasmic Reticulum-associated Degradation and Mannose Trimming","year":2006,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":257,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Endoplasmic reticulum; Mannose; Trimming; Glycoprotein; Degradation (telecommunications); Endoplasmic-reticulum-associated protein degradation; Chemistry; Cell biology; STIM1; Biochemistry; Biology; Computer science; Unfolded protein response","authors":[{"name":"Kazuyoshi Hirao","is_ca":false},{"name":"Yuko Natsuka","is_ca":false},{"name":"Taku Tamura","is_ca":false},{"name":"Ikuo Wada","is_ca":false},{"name":"Daisuke Morito","is_ca":false},{"name":"Shunji Natsuka","is_ca":false},{"name":"Pedro Romero","is_ca":true},{"name":"B. Sleno","is_ca":true},{"name":"Linda O. Tremblay","is_ca":true},{"name":"Annetté Herscovics","is_ca":true},{"name":"Kazuhiro Nagata","is_ca":false},{"name":"Nobuko Hosokawa","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01352466726293113,"gpt":0.2542129885869356,"spread":0.2406883213240045,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005399596,0.0001783074,0.0002659254,0.00003883095,0.0001172578,0.00005117841,0.0002072611,0.0003708264,0.00008707459],"category_scores_gemma":[0.0006135664,0.000135736,0.0001341082,0.0001236321,0.0001723563,0.00001116647,0.00009895074,0.0002841394,0.000003842476],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003260963,"about_ca_system_score_gemma":0.00008889262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002644115,"about_ca_topic_score_gemma":0.000008125588,"domain_scores_codex":[0.9986011,0.00009678777,0.0004937037,0.0002683494,0.000234449,0.000305622],"domain_scores_gemma":[0.9990896,0.00004656257,0.0003772407,0.000141489,0.000229063,0.0001160505],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002206355,0.0001314528,0.002867041,0.00001962613,0.00003556113,0.00005050041,0.000003772731,0.00001149164,0.9948493,0.00001636598,0.0008643981,0.0009298474],"study_design_scores_gemma":[0.001084196,0.0004318606,0.00393089,0.00003752046,0.00001332949,0.0003253306,0.0000588382,0.00004966484,0.9876636,0.0004243496,0.005803359,0.000177006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995937,0.001746018,0.0004472468,0.000243342,0.00006587657,0.0001281349,0.000008290296,0.00001056576,0.001413502],"genre_scores_gemma":[0.9961952,0.0003875448,0.0008553595,0.00004917624,0.0003279384,0.000009825289,0.00008674883,0.00001067913,0.00207756],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007185651,"threshold_uncertainty_score":0.5535154,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2004373930","doi":"10.1074/jbc.r114.601351","title":"The Emerging Link between O-GlcNAc and Alzheimer Disease","year":2014,"lang":"en","type":"review","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":256,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Alzheimer Society","keywords":"Neurodegeneration; Tau protein; Amyloid (mycology); Neuroscience; Biology; Alzheimer's disease; Chemistry; Cell biology; Biochemistry; Disease; Internal medicine; Medicine","authors":[{"name":"Yanping Zhu","is_ca":true},{"name":"Xiaoyang Shan","is_ca":false},{"name":"Scott A. Yuzwa","is_ca":false},{"name":"David J. Vocadlo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06433564338042629,"gpt":0.3664487455640733,"spread":0.302113102183647,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007574587,0.0002745817,0.0007052135,0.00002417027,0.0001549382,0.00006673963,0.000498883,0.0004635973,0.00003487546],"category_scores_gemma":[0.0007726183,0.0001411426,0.0004890233,0.00008071023,0.0002306999,0.000002383934,0.000253883,0.0005966436,0.000006795322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001397053,"about_ca_system_score_gemma":0.0001898414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":4.075634e-7,"about_ca_topic_score_gemma":1.061294e-7,"domain_scores_codex":[0.9983619,0.0001821194,0.0006789452,0.0002734089,0.0002250362,0.0002785857],"domain_scores_gemma":[0.9984568,0.0001625255,0.0005733507,0.0003160425,0.0001527632,0.0003385603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004328743,0.00001160702,0.0001325932,0.0007389659,0.0002872508,0.00001487004,0.000001040082,3.165352e-7,0.0005720442,0.000007182945,0.0008345117,0.9973564],"study_design_scores_gemma":[0.0001473165,0.00009618083,0.00005008622,0.0005072975,0.0002088336,0.00005922335,0.00000388935,0.000001071543,0.0006495117,0.0000690106,0.9980264,0.0001811574],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0007958959,0.9982723,0.00005551487,0.0002661239,0.00005996649,0.0001559015,0.00002232411,0.000003792939,0.0003682038],"genre_scores_gemma":[0.003059327,0.9938773,0.00006092469,0.00002712899,0.002554623,0.00001171273,0.00009165736,0.00002024424,0.0002970927],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9971919,"threshold_uncertainty_score":0.5755627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090211150","doi":"10.1039/c4cs00038b","title":"O-GlcNAc and neurodegeneration: biochemical mechanisms and potential roles in Alzheimer's disease and beyond","year":2014,"lang":"en","type":"review","venue":"Chemical Society Reviews","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":256,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Canadian Institutes of Health Research","keywords":"Neurodegeneration; Disease; Neuroscience; Alzheimer's disease; Medicine; Biology; Pathology","authors":[{"name":"Scott A. Yuzwa","is_ca":true},{"name":"David J. Vocadlo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02573092941214247,"gpt":0.3110193477316647,"spread":0.2852884183195222,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004214048,0.0004254523,0.00101042,0.00002701236,0.00007732902,0.00008187245,0.0001706805,0.0004966882,0.00001646946],"category_scores_gemma":[0.0001536224,0.0003444421,0.0003510492,0.0001202708,0.0002283943,0.000006688178,0.0004183089,0.000354868,0.000006194356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001439925,"about_ca_system_score_gemma":0.00007397144,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001909787,"about_ca_topic_score_gemma":0.000001093996,"domain_scores_codex":[0.9979207,0.0001869772,0.000561052,0.0008520298,0.0001737803,0.0003054767],"domain_scores_gemma":[0.9990634,0.00002349857,0.0001611475,0.0003562409,0.00003736435,0.000358348],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002309138,0.00007413748,0.00001133272,0.00770007,0.0001375846,0.000004943454,0.00001834067,1.795365e-7,0.03923128,0.0001827444,0.007410008,0.9452063],"study_design_scores_gemma":[0.0003393844,0.0000370315,0.000004110847,0.0008168272,0.0003466205,0.00003523599,0.000003347643,0.00009353742,0.00186443,0.00011658,0.9959155,0.0004274291],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0009551819,0.9975061,0.0002350704,0.0001616606,0.00003354634,0.00103619,0.00003272833,0.00000849073,0.00003098581],"genre_scores_gemma":[0.0003827105,0.9965781,0.001527604,0.0003400682,0.0002750984,0.0002257011,0.0005814762,0.00004212392,0.00004710515],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9885055,"threshold_uncertainty_score":0.9999008,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2792807715","doi":"10.1038/s41467-017-02795-4","title":"AMPK activation counteracts cardiac hypertrophy by reducing O-GlcNAcylation","year":2018,"lang":"en","type":"article","venue":"Nature Communications","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":254,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"National Heart, Lung, and Blood Institute; Servier; Fonds De La Recherche Scientifique - FNRS","keywords":"AMPK; Protein kinase A; Muscle hypertrophy; AMP-activated protein kinase; Internal medicine; Phosphorylation; Kinase; Chemistry; Endocrinology; Cell biology; NFAT; Biology; Calcineurin; Medicine","authors":[{"name":"Roselle Gélinas","is_ca":false},{"name":"Florence Mailleux","is_ca":false},{"name":"Justine Dontaine","is_ca":false},{"name":"Laurent Bultot","is_ca":false},{"name":"Bénédicte Demeulder","is_ca":false},{"name":"Audrey Ginion","is_ca":false},{"name":"Evangelos P. Daskalopoulos","is_ca":false},{"name":"Hrag Esfahani","is_ca":false},{"name":"Emilie Dubois‐Deruy","is_ca":false},{"name":"Benjamin Lauzier","is_ca":false},{"name":"Chantal Gauthier","is_ca":false},{"name":"Aaron Olson","is_ca":true},{"name":"Bertrand Bouchard","is_ca":true},{"name":"Christine Des Rosiers","is_ca":true},{"name":"Benoı̂t Viollet","is_ca":false},{"name":"Kei Sakamoto","is_ca":false},{"name":"Jean‐Luc Balligand","is_ca":false},{"name":"Jean‐Louis Vanoverschelde","is_ca":false},{"name":"Christophe Beauloye","is_ca":false},{"name":"Sandrine Horman","is_ca":false},{"name":"Luc Bertrand","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01424480004688062,"gpt":0.3193322881887113,"spread":0.3050874881418307,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001949051,0.0001054126,0.00008630176,0.00006455995,0.0003767755,0.0000546759,0.0004878555,0.0002788418,0.00003518142],"category_scores_gemma":[0.0003402498,0.0001061766,0.00005732863,0.0002258111,0.0001442822,0.00001639598,0.0002095796,0.0003789696,0.00005876497],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004012012,"about_ca_system_score_gemma":0.00007340356,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006524404,"about_ca_topic_score_gemma":0.00005266369,"domain_scores_codex":[0.9991099,0.0001442772,0.0001571499,0.0002278752,0.0001921367,0.0001686118],"domain_scores_gemma":[0.9980945,0.00003820164,0.00007889275,0.001283619,0.0004392569,0.00006552557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003968679,0.00006064612,0.0007262799,0.000003048209,0.00002953536,4.124916e-8,0.0000635385,0.000004123384,0.9364418,0.0005685261,0.05763003,0.004432728],"study_design_scores_gemma":[0.0001724519,0.00008516922,0.002801571,0.00001095183,0.000005889944,0.000001182042,0.00003399283,0.0003707044,0.2815595,0.00002799988,0.7148154,0.0001151488],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9497543,0.00421399,0.001963451,0.006230259,0.0004426376,0.0007852325,0.000100524,0.00007847853,0.03643112],"genre_scores_gemma":[0.9941189,0.0004107149,0.002187276,0.0004768981,0.0002781391,0.00004722411,0.001378965,0.00002012923,0.001081706],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6571854,"threshold_uncertainty_score":0.4329756,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3217549866","doi":"10.1016/j.ejcb.2021.151186","title":"Advances in understanding N-glycosylation structure, function, and regulation in health and disease","year":2021,"lang":"en","type":"review","venue":"European Journal of Cell Biology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":253,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Glycome; Glycosylation; Glycan; Galectin; Glycomics; Disease; Biology; Computational biology; Function (biology); Glycoproteomics; Cell biology; Medicine; Biochemistry; Glycoprotein; Pathology","authors":[{"name":"Sally Esmail","is_ca":true},{"name":"Morris F. Manolson","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03858810243361385,"gpt":0.3239088829063137,"spread":0.2853207804726999,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007296087,0.000159533,0.0004646073,0.0002983276,0.00004006341,0.00002281651,0.00007896201,0.00007931552,0.00001541785],"category_scores_gemma":[0.0001984695,0.0001324182,0.00006547433,0.0001652185,0.00006514744,0.00001164794,0.00007033979,0.0002635707,5.993015e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005127837,"about_ca_system_score_gemma":0.0003495148,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001444053,"about_ca_topic_score_gemma":0.00002077575,"domain_scores_codex":[0.9975672,0.001303136,0.0006365197,0.0002520993,0.00007842138,0.0001625727],"domain_scores_gemma":[0.999139,0.00003451628,0.0004815774,0.0001149268,0.00005128877,0.0001787396],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002211489,0.000046743,0.001306545,0.00373216,0.00002869385,0.0000525125,0.00004120727,0.00007023625,0.000731816,0.0008367904,0.00008848289,0.9928437],"study_design_scores_gemma":[0.0007293238,0.0004685863,0.0004999163,0.001716895,0.00001789496,0.0000462745,0.00003777502,0.00001414469,0.000009625533,0.0006847513,0.9956206,0.0001542289],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0006342548,0.9949321,0.003805676,0.00005131026,0.0001109525,0.0001843288,0.0000100428,0.000001276723,0.0002700993],"genre_scores_gemma":[0.04058301,0.9588459,0.0001647335,0.00004056918,0.0001292505,9.244313e-7,0.0001791416,0.00001972399,0.00003670252],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9955321,"threshold_uncertainty_score":0.5399859,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2102718441","doi":"10.1634/theoncologist.2010-0307","title":"Phase III Multicenter Clinical Trial of the Sialyl-TN (STn)-Keyhole Limpet Hemocyanin (KLH) Vaccine for Metastatic Breast Cancer","year":2011,"lang":"en","type":"article","venue":"The Oncologist","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":253,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"University of Texas MD Anderson Cancer Center; Merck KGaA","keywords":"Medicine; Keyhole limpet hemocyanin; Cyclophosphamide; Adjuvant; Metastatic breast cancer; Internal medicine; Breast cancer; Population; Seroconversion; Immunology; Cancer; Gastroenterology; Oncology; Chemotherapy; Antibody","authors":[{"name":"David Miles","is_ca":false},{"name":"Henri Roché","is_ca":false},{"name":"Miguel Martín","is_ca":false},{"name":"Timothy Perren","is_ca":false},{"name":"David Cameron","is_ca":false},{"name":"John A. Glaspy","is_ca":false},{"name":"David Dodwell","is_ca":false},{"name":"Joanne L. Parker","is_ca":true},{"name":"José Mayordomo","is_ca":false},{"name":"A. Trés","is_ca":false},{"name":"James L. Murray","is_ca":false},{"name":"Nuhad K. Ibrahim","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1108185418277803,"gpt":0.4328358542687114,"spread":0.3220173124409311,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001144137,0.0001443906,0.0002751382,0.00002139869,0.0001458976,0.00001435419,0.0005448858,0.000122572,0.0002265484],"category_scores_gemma":[0.0003923679,0.00007731902,0.0002696466,0.0001042854,0.0002597166,0.000004420971,0.0002145224,0.0001752344,0.00001007283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002386518,"about_ca_system_score_gemma":0.0001910288,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003391838,"about_ca_topic_score_gemma":0.0004620966,"domain_scores_codex":[0.9984433,0.0003243744,0.0005029083,0.0002806219,0.0001761138,0.0002726617],"domain_scores_gemma":[0.9988534,0.0001015749,0.0002735399,0.0004991998,0.0001953555,0.00007691796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.4657739,0.01556044,0.00449765,0.0001733911,0.001413185,0.0000122167,0.0008138465,0.00009589807,0.3295066,0.0009314104,0.0532832,0.1279383],"study_design_scores_gemma":[0.4725222,0.01569602,0.009094536,0.00007196281,0.0006370337,0.00005936312,0.0008275042,0.002791893,0.3209096,0.000530109,0.1761417,0.0007181329],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938134,0.0001573217,0.0006889416,0.001729873,0.000469501,0.002014256,0.0002314187,0.00001012841,0.0008851867],"genre_scores_gemma":[0.9966688,0.0001298282,0.0003934989,0.0004675223,0.0004047235,0.0001764609,0.00003089956,0.00001893948,0.001709369],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1272202,"threshold_uncertainty_score":0.3152978,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2807901568","doi":"10.1038/s41467-018-04365-8","title":"IBD risk loci are enriched in multigenic regulatory modules encompassing putative causative genes","year":2018,"lang":"en","type":"article","venue":"Nature Communications","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":252,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Mount Sinai Hospital; Hospital for Sick Children; Montreal Heart Institute; University of Toronto; Royal Victoria Hospital; Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Walloon excellence in life sciences and biotechnology; Nederlandse Federatie van Universitair Medische Centra; National Cancer Institute; Institut National Du Cancer; Belgian Federal Science Policy Office; National Institute of Diabetes and Digestive and Kidney Diseases; Fonds De La Recherche Scientifique - FNRS; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; RIKEN; Japan Agency for Medical Research and Development","keywords":"Gene; Genetics; Biology; Computational biology","authors":[{"name":"Yukihide Momozawa","is_ca":false},{"name":"Julia Dmitrieva","is_ca":false},{"name":"Emilie Théâtre","is_ca":false},{"name":"Valérie Deffontaine","is_ca":false},{"name":"Souad Rahmouni","is_ca":false},{"name":"Benoît Charloteaux","is_ca":false},{"name":"François Crins","is_ca":false},{"name":"Elisa Docampo","is_ca":false},{"name":"Mahmoud Elansary","is_ca":false},{"name":"Ann-Stephan Gori","is_ca":false},{"name":"Christelle Lecut","is_ca":false},{"name":"Rob Mariman","is_ca":false},{"name":"Myriam Mni","is_ca":false},{"name":"Cécile Oury","is_ca":false},{"name":"Ilya Altukhov","is_ca":false},{"name":"Dmitry Alexeev","is_ca":false},{"name":"Yurii S. Aulchenko","is_ca":false},{"name":"Leila Amininejad","is_ca":false},{"name":"Gerd Bouma","is_ca":false},{"name":"Frank Hoentjen","is_ca":false},{"name":"Mark Löwenberg","is_ca":false},{"name":"Bas Oldenburg","is_ca":false},{"name":"Marieke Pierik","is_ca":false},{"name":"Andrea E. van der Meulen‐de Jong","is_ca":false},{"name":"C. Janneke van der Woude","is_ca":false},{"name":"Marijn C. Visschedijk","is_ca":false},{"name":"Clara Abraham","is_ca":false},{"name":"Jean–Paul Achkar","is_ca":false},{"name":"Tariq Ahmad","is_ca":false},{"name":"Ashwin N. Ananthakrishnan","is_ca":false},{"name":"Vibeke Andersen","is_ca":false},{"name":"Carl A. Anderson","is_ca":false},{"name":"Jane M. Andrews","is_ca":false},{"name":"Vito Annese","is_ca":false},{"name":"Guy Aumais","is_ca":true},{"name":"Leonard Baidoo","is_ca":false},{"name":"Robert N. Baldassano","is_ca":false},{"name":"Peter A. Bampton","is_ca":false},{"name":"Murray L. Barclay","is_ca":false},{"name":"Jeffrey C. Barrett","is_ca":false},{"name":"Theodore M. Bayless","is_ca":false},{"name":"Johannes Bethge","is_ca":false},{"name":"Alain Bitton","is_ca":true},{"name":"Gabrielle Boucher","is_ca":true},{"name":"Stephan Brand","is_ca":false},{"name":"Berenice Brandt","is_ca":false},{"name":"Steven R. Brant","is_ca":false},{"name":"Carsten Büning","is_ca":false},{"name":"Angela Chew","is_ca":false},{"name":"Judy H. Cho","is_ca":false},{"name":"Isabelle Cleynen","is_ca":false},{"name":"Ariella Cohain","is_ca":false},{"name":"Anthony Croft","is_ca":false},{"name":"Mark J. Daly","is_ca":false},{"name":"Mauro D’Amato","is_ca":false},{"name":"Silvio Danese","is_ca":false},{"name":"Dirk de Jong","is_ca":false},{"name":"Goda Denapienė","is_ca":false},{"name":"Lee A. Denson","is_ca":false},{"name":"Kathy L. Devaney","is_ca":false},{"name":"Olivier Dewit","is_ca":false},{"name":"R. D’Incà","is_ca":false},{"name":"Marla C. Dubinsky","is_ca":false},{"name":"Richard H. Duerr","is_ca":false},{"name":"Cathryn Edwards","is_ca":false},{"name":"David Ellinghaus","is_ca":false},{"name":"Jonah Essers","is_ca":false},{"name":"Lynnette R. Ferguson","is_ca":false},{"name":"Eleonora A. Festen","is_ca":false},{"name":"Philip Fleshner","is_ca":false},{"name":"Tim Florin","is_ca":false},{"name":"Andre Franke","is_ca":false},{"name":"Karin Fransén","is_ca":false},{"name":"Richard B. Gearry","is_ca":false},{"name":"Christian Gieger","is_ca":false},{"name":"Jürgen Glas","is_ca":false},{"name":"Philippe Goyette","is_ca":true},{"name":"Todd J. Green","is_ca":false},{"name":"Anne M. Griffiths","is_ca":true},{"name":"Stephen L. Guthery","is_ca":false},{"name":"Håkon Håkonarson","is_ca":false},{"name":"Jonas Halfvarson","is_ca":false},{"name":"Katherine Hanigan","is_ca":false},{"name":"Talin Haritunians","is_ca":false},{"name":"Ailsa Hart","is_ca":false},{"name":"C J Hawkey","is_ca":false},{"name":"Nicholas K. Hayward","is_ca":false},{"name":"Matija Hedl","is_ca":false},{"name":"Paul Henderson","is_ca":false},{"name":"Xinli Hu","is_ca":false},{"name":"Hailiang Huang","is_ca":false},{"name":"Ken Hui","is_ca":false},{"name":"Marcin Imieliński","is_ca":false},{"name":"Andrew Ippoliti","is_ca":false},{"name":"Laimas Virginijus Jonaitis","is_ca":false},{"name":"Luke Jostins-Dean","is_ca":false},{"name":"Tom H. Karlsen","is_ca":false},{"name":"Nicholas A. Kennedy","is_ca":false},{"name":"Mohammed Azam Khan","is_ca":false},{"name":"Gediminas Kiudelis","is_ca":false},{"name":"Krupa Krishnaprasad","is_ca":false},{"name":"Subra Kugathasan","is_ca":false},{"name":"L. Kupčinskas","is_ca":false},{"name":"Anna Latiano","is_ca":false},{"name":"Debby Laukens","is_ca":false},{"name":"Ian C. Lawrance","is_ca":false},{"name":"James Lee","is_ca":false},{"name":"Charlie W. Lees","is_ca":false},{"name":"Mārcis Leja","is_ca":false},{"name":"Johan Van Limbergen","is_ca":true},{"name":"Paolo Lionetti","is_ca":false},{"name":"Jimmy Z. Liu","is_ca":false},{"name":"Gillian Mahy","is_ca":false},{"name":"John Mansfield","is_ca":false},{"name":"Dunecan Massey","is_ca":false},{"name":"Christopher G. Mathew","is_ca":false},{"name":"Dermot McGovern","is_ca":false},{"name":"Raquel Milgrom","is_ca":true},{"name":"Mitja Mitrovič","is_ca":false},{"name":"Grant W. Montgomery","is_ca":false},{"name":"Craig Mowat","is_ca":false},{"name":"William G. Newman","is_ca":false},{"name":"Aylwin Ng","is_ca":false},{"name":"Siew C. Ng","is_ca":false},{"name":"Sok Meng Evelyn Ng","is_ca":false},{"name":"Susanna Nikolaus","is_ca":false},{"name":"Kaida Ning","is_ca":false},{"name":"Markus M. Nöthen","is_ca":false},{"name":"Ioannis Oikonomou","is_ca":false},{"name":"Orazio Palmieri","is_ca":false},{"name":"Miles Parkes","is_ca":false},{"name":"Anne Phillips","is_ca":false},{"name":"Cyriel Y. Ponsioen","is_ca":false},{"name":"Uroš Potočnik","is_ca":false},{"name":"Natalie J. Prescott","is_ca":false},{"name":"Deborah D. Proctor","is_ca":false},{"name":"Graham Radford‐Smith","is_ca":false},{"name":"Jean‐François Rahier","is_ca":false},{"name":"Soumya Raychaudhuri","is_ca":false},{"name":"Miguel Regueiro","is_ca":false},{"name":"Florian Rieder","is_ca":false},{"name":"John D. Rioux","is_ca":true},{"name":"Stephan Ripke","is_ca":false},{"name":"Rebecca Roberts","is_ca":false},{"name":"Richard K. Russell","is_ca":false},{"name":"Jeremy Sanderson","is_ca":false},{"name":"Miquel Sans","is_ca":false},{"name":"Jack Satsangi","is_ca":false},{"name":"Eric E. Schadt","is_ca":false},{"name":"Stefan Schreiber","is_ca":false},{"name":"Dominik M. Schulte","is_ca":false},{"name":"L. Philip Schumm","is_ca":false},{"name":"Regan Scott","is_ca":false},{"name":"Mark Seielstad","is_ca":false},{"name":"Yashoda Sharma","is_ca":false},{"name":"Mark S. Silverberg","is_ca":true},{"name":"Lisa A. Simms","is_ca":false},{"name":"Jurgita Skiecevičienė","is_ca":false},{"name":"Sarah L. Spain","is_ca":false},{"name":"A. Hillary Steinhart","is_ca":true},{"name":"Joanne M. Stempak","is_ca":true},{"name":"Laura Stronati","is_ca":false},{"name":"Jurgita Šventoraitytė","is_ca":false},{"name":"Stephan R. Targan","is_ca":false},{"name":"Kirstin M. Taylor","is_ca":false},{"name":"Anje ter Velde","is_ca":false},{"name":"Leif Törkvist","is_ca":false},{"name":"Mark Tremelling","is_ca":false},{"name":"Suzanne van Sommeren","is_ca":false},{"name":"Eric Vasiliauskas","is_ca":false},{"name":"Hein W. Verspaget","is_ca":false},{"name":"Thomas D. Walters","is_ca":true},{"name":"Kai Wang","is_ca":false},{"name":"Ming‐Hsi Wang","is_ca":false},{"name":"Zhi Wei","is_ca":false},{"name":"David C. Whiteman","is_ca":false},{"name":"Cisca Wijmenga","is_ca":false},{"name":"David C. Wilson","is_ca":false},{"name":"Juliane Winkelmann","is_ca":false},{"name":"Ramnik J. Xavier","is_ca":false},{"name":"Bin Zhang","is_ca":false},{"name":"Hu Zhang","is_ca":false},{"name":"Wei Zhang","is_ca":false},{"name":"Hongyu Zhao","is_ca":false},{"name":"Zhen Zhao","is_ca":false},{"name":"Mark Lathrop","is_ca":true},{"name":"Jean‐Pierre Hugot","is_ca":false},{"name":"Rinse K. Weersma","is_ca":false},{"name":"Martine De Vos","is_ca":false},{"name":"Denis Franchimont","is_ca":false},{"name":"Séverine Vermeire","is_ca":false},{"name":"Michiaki Kubo","is_ca":false},{"name":"Édouard Louis","is_ca":false},{"name":"Michel Georges","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02253458620875133,"gpt":0.3358512523015711,"spread":0.3133166660928198,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003622296,0.0001484292,0.000146775,0.0001422604,0.0003845717,0.00003378686,0.000693189,0.0003545678,0.00002399233],"category_scores_gemma":[0.0005159792,0.0001446227,0.00007037009,0.0003474402,0.0004463515,0.00001078366,0.0004065047,0.0006537279,0.00003267758],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006621418,"about_ca_system_score_gemma":0.0001045215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001102678,"about_ca_topic_score_gemma":0.004510519,"domain_scores_codex":[0.9985682,0.000478583,0.0002272547,0.0003063215,0.000184265,0.0002353515],"domain_scores_gemma":[0.9978819,0.00007682234,0.0001650756,0.001352256,0.0004466628,0.00007729917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002661056,0.0007199993,0.1811542,0.0000302453,0.0003126044,0.000005222188,0.003154964,0.0004280914,0.7586207,0.003593724,0.006505213,0.04520888],"study_design_scores_gemma":[0.001184162,0.0001636171,0.7573931,0.00003233093,0.00002201225,0.00000670964,0.001477464,0.006284394,0.1382405,0.000858241,0.09389949,0.0004379713],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828061,0.01185461,0.00140827,0.001053626,0.00007846792,0.0004625996,0.00006964208,0.00002947908,0.00223717],"genre_scores_gemma":[0.9897304,0.0009782113,0.00835585,0.0001489098,0.0001141661,0.00007727045,0.00026849,0.00002070215,0.0003060391],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6203802,"threshold_uncertainty_score":0.5897542,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121191797","doi":"10.1002/chem.200800700","title":"Glycomimetics and Glycodendrimers as High Affinity Microbial Anti‐adhesins","year":2008,"lang":"en","type":"article","venue":"Chemistry - A European Journal","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":250,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"Centre National de la Recherche Scientifique; Fonds Québécois de la Recherche sur la Nature et les Technologies; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Glycoconjugate; Bacterial adhesin; Lectin; Chemistry; Adhesion; Glycoprotein; Oligosaccharide; Biofilm; Biochemistry; Microbiology; Virulence; Biology; Bacteria; Organic chemistry","authors":[{"name":"Anne Imberty","is_ca":false},{"name":"Yoann M. Chabre","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01451285630682767,"gpt":0.2329889386086238,"spread":0.2184760823017961,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003930318,0.0002320866,0.0001850464,0.00004105197,0.0004504514,0.00009882379,0.0003388553,0.00009394212,0.0003051615],"category_scores_gemma":[0.0002492368,0.0002257257,0.000119297,0.0001041155,0.0003050347,0.000009402645,0.0002271878,0.0004677202,0.0001058395],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002254486,"about_ca_system_score_gemma":0.0001816421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007299512,"about_ca_topic_score_gemma":6.501263e-7,"domain_scores_codex":[0.9985194,0.0001451535,0.0003235538,0.0003622748,0.0002556951,0.0003939618],"domain_scores_gemma":[0.9989485,0.00001208154,0.0001449736,0.000332633,0.0001705461,0.0003912424],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001491296,0.00007475141,0.0005761341,0.00001945442,0.00005385647,0.0005142558,0.00007890746,0.00001732061,0.9897591,0.000003360518,0.007769989,0.0009837439],"study_design_scores_gemma":[0.002056201,0.0002365032,0.004159425,0.00002573388,0.00002015962,0.008821282,0.00007382454,0.00004029557,0.8643966,0.00001443628,0.1197865,0.0003690085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931942,0.0003694883,0.00024616,0.0002674043,0.0001085186,0.00008270494,0.00001773446,0.00001871805,0.005695043],"genre_scores_gemma":[0.9921428,0.0009481324,0.001235228,0.0001905866,0.0007386152,0.000001176075,0.00005674518,0.00005092607,0.004635808],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1253624,"threshold_uncertainty_score":0.9204828,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1989476631","doi":"10.1074/jbc.m113.470047","title":"Hyper-O-GlcNAcylation Is Anti-apoptotic and Maintains Constitutive NF-κB Activity in Pancreatic Cancer Cells","year":2013,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":244,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; University of Pennsylvania","keywords":"Cell growth; Phosphorylation; Pancreatic cancer; Warburg effect; Apoptosis; Kinase; Cell biology; Glutamine; Cancer research; Cancer cell; Cell culture; Biology; Chemistry; Biochemistry; Glycolysis; Metabolism; Cancer","authors":[{"name":"Zhiyuan Ma","is_ca":false},{"name":"David J. Vocadlo","is_ca":true},{"name":"Keith Vosseller","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02024090816980356,"gpt":0.2837876557394137,"spread":0.2635467475696101,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001989904,0.000130063,0.0002279367,0.00003212429,0.00004366154,0.00003159562,0.0001210467,0.0002287851,0.0003833276],"category_scores_gemma":[0.0001726556,0.00009471981,0.00007243524,0.00009075418,0.00019174,0.00001256902,0.00007414121,0.0002507624,0.000006603185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004335022,"about_ca_system_score_gemma":0.0001063878,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000562163,"about_ca_topic_score_gemma":0.000003579909,"domain_scores_codex":[0.9991298,0.00005974088,0.0002584257,0.0001999696,0.000137426,0.0002146424],"domain_scores_gemma":[0.9993824,0.00003588828,0.000168464,0.0001125268,0.0001683029,0.0001324049],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006996226,0.00007064966,0.03614639,0.00002556849,0.00002497041,0.000006754702,0.00001385118,0.00002618522,0.9619254,0.000003874773,0.0002003703,0.001485953],"study_design_scores_gemma":[0.0006160674,0.0001346657,0.04884265,0.00003589326,0.000007198123,0.00004241255,0.00008008453,0.0001299784,0.9489394,0.0001207187,0.0009283409,0.0001225689],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979644,0.0004611903,0.0001383452,0.0003632861,0.00003411142,0.0001513858,0.00001243854,0.000002823137,0.0008720323],"genre_scores_gemma":[0.9982934,0.001022128,0.0002120223,0.0001350636,0.0001268624,0.00001144469,0.000006167099,0.000005501332,0.0001873959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01298604,"threshold_uncertainty_score":0.4197168,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091221538","doi":"10.1002/1097-0142(20010601)91:11<1973::aid-cncr1222>3.0.co;2-a","title":"The importance of MUC1 cellular localization in patients with breast carcinoma","year":2001,"lang":"en","type":"review","venue":"Cancer","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":244,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"MUC1; Staining; Mucin; Pathology; Medicine; Carcinoma; Immunohistochemistry; Lymph node; Breast cancer; Breast carcinoma; Cancer; Internal medicine","authors":[{"name":"Jennifer J. Rahn","is_ca":true},{"name":"Laith Dabbagh","is_ca":true},{"name":"Manijeh Pasdar","is_ca":true},{"name":"Judith Hugh","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01520575975501913,"gpt":0.2919926661942713,"spread":0.2767869064392521,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009597347,0.0001503868,0.0002844354,0.00004277832,0.00004247971,0.00001093311,0.0001893012,0.0001514342,0.00004684109],"category_scores_gemma":[0.00001693215,0.00009116866,0.00007454325,0.0002615805,0.00007508678,0.000001945797,0.00004990483,0.0001075081,0.000002761371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005223654,"about_ca_system_score_gemma":0.0002846529,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004909266,"about_ca_topic_score_gemma":0.0002829997,"domain_scores_codex":[0.9990685,0.0000682192,0.0002630877,0.0002392042,0.0001801802,0.0001807805],"domain_scores_gemma":[0.9992722,0.00000687623,0.0001795346,0.0003419615,0.000159705,0.00003968388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001136547,0.00007590422,0.09201006,0.00219956,0.00007774335,0.000004522403,0.000009755085,0.00004161003,0.000009195212,0.00002914117,0.001190165,0.9042387],"study_design_scores_gemma":[0.0003368704,0.00006245301,0.001633469,0.0005947095,0.00002533528,0.000001433933,0.000003078327,0.00001040375,0.00004969145,0.000001914283,0.9971569,0.0001238005],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003565956,0.995257,0.00008518247,0.00001124428,0.00004781208,0.0006104068,0.00006762439,0.000001941557,0.0003527833],"genre_scores_gemma":[0.006475736,0.9921514,0.000006152894,0.00001838989,0.0000776066,0.0001382135,0.0004160624,0.00002838304,0.0006880337],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9959667,"threshold_uncertainty_score":0.371775,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1993301344","doi":"10.1038/nmeth1035","title":"Multiplexed analysis of glycan variation on native proteins captured by antibody microarrays","year":2007,"lang":"en","type":"article","venue":"Nature Methods","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":242,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Memorial Sloan-Kettering Cancer Center; Van Andel Research Institute","keywords":"Glycan; Glycobiology; Biology; Antibody; Lectin; Glycomics; Protein Array Analysis; Biochemistry; MUC1; Antibody microarray; Glycosylation; Glycoprotein; Molecular biology; DNA microarray; Computational biology; Gene; Mucin; Immunology; Gene expression","authors":[{"name":"Songming Chen","is_ca":false},{"name":"Tom LaRoche","is_ca":true},{"name":"Darren Hamelinck","is_ca":true},{"name":"D.P. Bergsma","is_ca":false},{"name":"Dean E. Brenner","is_ca":false},{"name":"Diane M. Simeone","is_ca":false},{"name":"Randall E. Brand","is_ca":false},{"name":"Brian B. Haab","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01103733531617549,"gpt":0.4065743079920656,"spread":0.3955369726758901,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00187708,0.0001726763,0.0002775438,0.0003826644,0.00007356145,0.00001526685,0.0002159599,0.0005985686,0.00006058356],"category_scores_gemma":[0.001144221,0.0001505731,0.0001972597,0.001031487,0.00006868779,0.000004047349,0.00005129369,0.0004252534,0.000001645225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003655419,"about_ca_system_score_gemma":0.0000575584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001070714,"about_ca_topic_score_gemma":0.00009487895,"domain_scores_codex":[0.9983232,0.0004115057,0.0002941095,0.0003672652,0.0003328346,0.000271066],"domain_scores_gemma":[0.9988438,0.0001060506,0.0001813447,0.0004090112,0.0003632274,0.00009660073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004179298,0.0001230275,0.0004508568,0.00001141167,0.0005099616,0.000001205127,0.0001793185,0.00008366994,0.9922574,0.0001921766,0.0002828678,0.005490225],"study_design_scores_gemma":[0.0005804969,0.0002356833,0.02036323,0.000005995425,0.00009435275,8.367476e-7,0.00006743622,0.0004060265,0.956381,0.00003497887,0.02167492,0.0001550285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.48317,0.0009978154,0.5111229,0.0002365551,0.0001895962,0.0008588144,0.0001732503,0.00001929907,0.003231723],"genre_scores_gemma":[0.8982207,0.00002022599,0.09981567,0.0002110863,0.00009068832,0.00001497307,0.0007704775,0.00001879947,0.0008373879],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.4150507,"threshold_uncertainty_score":0.6140191,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2807859574","doi":"10.3390/cancers10060207","title":"Hypersialylation in Cancer: Modulation of Inflammation and Therapeutic Opportunities","year":2018,"lang":"en","type":"review","venue":"Cancers","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":240,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; Canadian Glycomics Network; National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Defense","keywords":"Glycosylation; Selectin; Cancer; Cancer cell; Sialic acid; Cancer research; Tumor microenvironment; Immune system; Inflammation; Biology; Immunology; Biochemistry; Genetics","authors":[{"name":"Emily Rodrigues","is_ca":true},{"name":"Matthew S. Macauley","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1095091479623947,"gpt":0.368058725209175,"spread":0.2585495772467803,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000157642,0.0001268204,0.0002923564,0.0001544969,0.00002524617,0.00001024283,0.00007619594,0.0001982367,0.00002918393],"category_scores_gemma":[0.00002313103,0.0001177321,0.00006276105,0.0001167461,0.00009148761,0.000003965731,0.00003147464,0.00006879249,0.00000124517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001859331,"about_ca_system_score_gemma":0.0007240333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001794337,"about_ca_topic_score_gemma":0.0002301132,"domain_scores_codex":[0.9992283,0.00008436454,0.0002660606,0.0002015369,0.0001105042,0.0001092487],"domain_scores_gemma":[0.999537,0.000009530248,0.0001810236,0.0001559645,0.00008370993,0.00003278909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001694436,0.000001996303,0.00003716018,0.001817111,0.00004088102,3.220217e-7,0.00005559076,0.0001130936,0.000754083,0.00004489909,0.00004672238,0.9970712],"study_design_scores_gemma":[0.0002077563,0.00009209792,0.00007326064,0.001037293,0.00003913858,0.000002059072,0.00003708548,0.000671144,0.0004442816,0.00003768254,0.9972019,0.0001563344],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01085461,0.9881216,0.00003647623,0.00001574502,0.00007740267,0.0004495888,0.00002652214,0.000003395259,0.0004146394],"genre_scores_gemma":[0.01622847,0.9829344,0.00002148094,0.000006762176,0.0001742882,0.0001039216,0.0002066539,0.00001711268,0.0003069681],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9971551,"threshold_uncertainty_score":0.4800974,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1976609472","doi":"10.1038/nmeth899","title":"High-throughput screening methodology for the directed evolution of glycosyltransferases","year":2006,"lang":"en","type":"article","venue":"Nature Methods","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Steacie Institute for Molecular Sciences; University of British Columbia","funders":"","keywords":"Glycobiology; Directed evolution; Glycosyltransferase; Cell sorting; Chemistry; Escherichia coli; High-throughput screening; Population; Biochemistry; Fluorescence; Protein engineering; Substrate specificity; Glycomics; Mutant; Computational biology; Substrate (aquarium); Cell; Biology; Glycan; Enzyme; Gene; Glycoprotein","authors":[{"name":"Amir Aharoni","is_ca":true},{"name":"K. Thieme","is_ca":true},{"name":"Cecilia Chiu","is_ca":true},{"name":"Sabrina Buchini","is_ca":true},{"name":"Luke L. Lairson","is_ca":true},{"name":"Hongming Chen","is_ca":true},{"name":"N.C.J. Strynadka","is_ca":true},{"name":"Warren W. Wakarchuk","is_ca":true},{"name":"Stephen G. Withers","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03414705089288748,"gpt":0.3949962321749222,"spread":0.3608491812820347,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001940196,0.0001421235,0.0002152339,0.00007830734,0.0001471135,0.00001318711,0.0002515818,0.0004528608,0.00003236662],"category_scores_gemma":[0.001527233,0.0001010623,0.0001693964,0.0002700245,0.0001282616,0.000004139958,0.00005325552,0.0002855121,6.254444e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001763603,"about_ca_system_score_gemma":0.00007239457,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004127621,"about_ca_topic_score_gemma":0.0001569203,"domain_scores_codex":[0.9981657,0.0008185806,0.0002609339,0.0003187406,0.0001750428,0.0002610214],"domain_scores_gemma":[0.998409,0.0007633997,0.00008493938,0.0003778514,0.0003321803,0.00003256924],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004543519,0.00003907225,0.0002679816,0.00002904333,0.00007493701,3.915146e-7,0.000008965392,0.0005105962,0.9443696,0.008592335,0.002129507,0.04352329],"study_design_scores_gemma":[0.0007585702,0.0002008864,0.006952722,0.000007999796,0.00004034129,0.000007413848,0.00002814533,0.0007946742,0.8907369,0.00301618,0.09733023,0.0001258774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03141639,0.007415637,0.9594489,0.0005387313,0.000290845,0.0005285516,0.00005156559,0.00002673156,0.0002826442],"genre_scores_gemma":[0.4245246,0.00004735433,0.5743498,0.00007494683,0.0003193352,0.00006411001,0.00009889618,0.00001736218,0.0005036777],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.3931082,"threshold_uncertainty_score":0.4121199,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}