{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":3719,"total_is_capped":false,"direct_labels_cover":13,"predictions_cover":3719,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"d0659d0f2a98","filters":{"topic":"HIV Research and Treatment"}},"results":[{"id":"W2002574877","doi":"10.1073/pnas.0802203105","title":"Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1937,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Tulane University; York University; National Institutes of Health; Harvard University; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation","keywords":"Biology; Virology; Phylogenetic tree; Viral evolution; Viremia; Virus; Genetics; Phylogenetics; Clade; Transmission (telecommunications); Genome; Gene","authors":[{"name":"Brandon F. Keele","is_ca":false},{"name":"Elena E. Giorgi","is_ca":false},{"name":"Jesus F. Salazar-Gonzalez","is_ca":false},{"name":"Julie M. Decker","is_ca":false},{"name":"Kimmy T. Pham","is_ca":false},{"name":"Maria G. Salazar","is_ca":false},{"name":"Chuanxi Sun","is_ca":false},{"name":"Truman Grayson","is_ca":false},{"name":"Shuyi Wang","is_ca":false},{"name":"Hui Li","is_ca":false},{"name":"Xiping Wei","is_ca":false},{"name":"Chunlai Jiang","is_ca":false},{"name":"Jennifer Kirchherr","is_ca":false},{"name":"Feng Gao","is_ca":false},{"name":"Jeffery A. Anderson","is_ca":false},{"name":"Li-Hua Ping","is_ca":false},{"name":"Ronald Swanstrom","is_ca":false},{"name":"Georgia D. Tomaras","is_ca":false},{"name":"William A. Blattner","is_ca":false},{"name":"Paul Goepfert","is_ca":false},{"name":"J Michael Kilby","is_ca":false},{"name":"Michael S. Saag","is_ca":false},{"name":"Eric Delwart","is_ca":false},{"name":"Michael P. Busch","is_ca":false},{"name":"Myron S. Cohen","is_ca":false},{"name":"David C. Montefiori","is_ca":false},{"name":"Barton F. Haynes","is_ca":false},{"name":"Brian Gaschen","is_ca":false},{"name":"Gayathri S. Athreya","is_ca":false},{"name":"Ha Y. Lee","is_ca":false},{"name":"Natasha T. Wood","is_ca":false},{"name":"Cathal Seoighe","is_ca":false},{"name":"Alan S. Perelson","is_ca":false},{"name":"Tanmoy Bhattacharya","is_ca":false},{"name":"Bette Korber","is_ca":false},{"name":"Beatrice H. Hahn","is_ca":false},{"name":"George M. Shaw","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02920532193827497,"gpt":0.2717418067568672,"spread":0.2425364848185922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006108589,0.0002302607,0.0004117735,0.0003457208,0.0002248958,0.000426845,0.0002919593,0.000311962,0.0003347356],"category_scores_gemma":[0.001628372,0.0002995087,0.000250131,0.0001946065,0.0003219938,0.0003557178,0.0002198626,0.0003185117,0.0001349193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004396114,"about_ca_system_score_gemma":0.0003146758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001139798,"about_ca_topic_score_gemma":0.000911059,"domain_scores_codex":[0.9998214,0.00004938285,0.000006991679,0.00004967149,0.00004161127,0.00003093308],"domain_scores_gemma":[0.9996624,0.0001503562,0.00008260111,0.00004470979,0.00002676223,0.00003312748],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008115488,0.0002922322,0.3105449,0.000202412,0.0001145218,0.00118351,0.0007632154,0.1077826,0.5444625,0.007242895,0.0002852254,0.0263144],"study_design_scores_gemma":[0.00006990876,0.0009692076,0.2090943,0.00003806605,0.0001035071,0.004875364,0.0003271086,0.6981044,0.07230508,0.01258182,0.001484786,0.00004642618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923611,0.0002090428,0.007165699,0.00002143807,0.000001091581,0.000007167062,0.00003852819,0.00001427359,0.0001815854],"genre_scores_gemma":[0.9951933,0.0001826419,0.004292843,0.00001076284,0.000003382261,0.00001046927,0.0001204806,0.00000476521,0.0001812776],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001139798,"threshold_uncertainty_score":0.003230572,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2101516953","doi":"10.1038/nm880","title":"Long-term follow-up studies confirm the stability of the latent reservoir for HIV-1 in resting CD4+ T cells","year":2003,"lang":"en","type":"article","venue":"Nature Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1739,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Doris Duke Charitable Foundation","keywords":"Viremia; Antiretroviral therapy; Human immunodeficiency virus (HIV); Persistence (discontinuity); Immunology; Term (time); Virology; Medicine; Biology; Viral load; Physics","authors":[{"name":"Janet D. Siliciano","is_ca":false},{"name":"Joleen Kajdas","is_ca":false},{"name":"Diana Finzi","is_ca":false},{"name":"Thomas C. Quinn","is_ca":false},{"name":"Karen Chadwick","is_ca":false},{"name":"Joseph B. Margolick","is_ca":false},{"name":"Colin Kovacs","is_ca":true},{"name":"Stephen J. Gange","is_ca":false},{"name":"Robert F. Siliciano","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04432012133648076,"gpt":0.33302922358088,"spread":0.2887091022443992,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001470889,0.0004415529,0.000951736,0.0005788733,0.001050631,0.001415495,0.0006078977,0.00098443,0.003059301],"category_scores_gemma":[0.002197641,0.0001974396,0.0004863907,0.0005041708,0.0006622406,0.001519042,0.0005032123,0.002029317,0.001091854],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004138438,"about_ca_system_score_gemma":0.0003317556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009909921,"about_ca_topic_score_gemma":0.0009896664,"domain_scores_codex":[0.9997042,0.00004380301,0.00002256193,0.00005964179,0.00004871639,0.0001211132],"domain_scores_gemma":[0.9970726,0.0009071762,0.0005363473,0.0004779035,0.0005864503,0.0004195788],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01237434,0.002430496,0.2917684,0.0005883044,0.0007618428,0.002427677,0.001436591,0.0009448378,0.5615713,0.001047501,0.002048342,0.1226003],"study_design_scores_gemma":[0.0005428765,0.0226334,0.7621567,0.0001765613,0.001966434,0.00721682,0.001514984,0.001837712,0.18469,0.00289887,0.01421182,0.0001537484],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839165,0.008266921,0.00295263,0.0004121317,0.0001030801,0.00008621639,0.001234183,0.0001105985,0.002917706],"genre_scores_gemma":[0.9939221,0.0008586585,0.0005139424,0.0002551944,0.00005595777,0.00007998796,0.001773244,0.00001849241,0.002522415],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003059301,"threshold_uncertainty_score":0.01023436,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2124114936","doi":"10.1038/nm.1972","title":"HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation","year":2009,"lang":"en","type":"article","venue":"Nature Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1730,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Victoria Hospital; McGill University Health Centre; Royal Victoria Regional Health Centre; Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"National Institutes of Health","keywords":"Persistence (discontinuity); Homeostasis; Biology; Antiretroviral therapy; Immunology; Viral replication; T cell; Viral load; Human immunodeficiency virus (HIV); Cell growth; Virology; Cell biology; Immune system; Virus; Genetics","authors":[{"name":"Nicolas Chomont","is_ca":true},{"name":"Mohamed El‐Far","is_ca":true},{"name":"Petronela Ancuța","is_ca":true},{"name":"Lydie Trautmann","is_ca":true},{"name":"Francesco A. Procopio","is_ca":true},{"name":"Bader Yassine‐Diab","is_ca":true},{"name":"Geneviève Boucher","is_ca":true},{"name":"Mohamed‐Rachid Boulassel","is_ca":true},{"name":"Georges Ghattas","is_ca":false},{"name":"Jason M. Brenchley","is_ca":false},{"name":"Timothy W. Schacker","is_ca":false},{"name":"Brenna J. Hill","is_ca":false},{"name":"Daniel C. Douek","is_ca":false},{"name":"Jean‐Pierre Routy","is_ca":true},{"name":"Elias K. Haddad","is_ca":true},{"name":"Rafick‐Pierre Sékaly","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00938175360787446,"gpt":0.2549163335116318,"spread":0.2455345799037573,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004076005,0.0002805917,0.0004043537,0.0006555857,0.0002745944,0.001538994,0.0003850848,0.0005704981,0.002344339],"category_scores_gemma":[0.001694855,0.0004067037,0.0003131053,0.0002319879,0.0006278777,0.001282101,0.0007020847,0.001108743,0.0006280458],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004003738,"about_ca_system_score_gemma":0.0003798724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003663628,"about_ca_topic_score_gemma":0.000350542,"domain_scores_codex":[0.9994825,0.00007724152,0.00003208667,0.0001202379,0.0001036945,0.0001842492],"domain_scores_gemma":[0.9988043,0.0003843894,0.0003334021,0.0001219336,0.000166748,0.0001893002],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001295881,0.0002329678,0.03061716,0.000133107,0.0000649088,0.0003170745,0.0002142271,0.001028329,0.9209176,0.003707934,0.0008977627,0.04057309],"study_design_scores_gemma":[0.0002029571,0.002267822,0.4901708,0.0001008081,0.0002327441,0.003580046,0.000890122,0.02229604,0.463798,0.009588505,0.006762415,0.0001097154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9892995,0.003489104,0.002965639,0.0002884875,0.00005047558,0.00003447445,0.0002031704,0.0001197357,0.003549403],"genre_scores_gemma":[0.9976295,0.0004246903,0.0006344453,0.00007531398,0.00005188393,0.00003508868,0.0001058734,0.00002545373,0.001017948],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002344339,"threshold_uncertainty_score":0.0078426,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964622370","doi":"10.1016/s0140-6736(02)09411-4","title":"Prognosis of HIV-1-infected patients starting highly active antiretroviral therapy: a collaborative analysis of prospective studies","year":2002,"lang":"en","type":"article","venue":"The Lancet","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1528,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; AIDS Vancouver","funders":"Roche; Abbott Laboratories","keywords":"Medicine; Cohort; Viral load; Internal medicine; Hazard ratio; Proportional hazards model; Cohort study; Antiretroviral therapy; Prospective cohort study; Sida; Human immunodeficiency virus (HIV); Immunology; Confidence interval; Viral disease","authors":[{"name":"Matthias Egger","is_ca":false},{"name":"Margaret May","is_ca":false},{"name":"Geneviève Chêne","is_ca":false},{"name":"Andrew Phillips","is_ca":false},{"name":"Bruno Ledergerber","is_ca":false},{"name":"François Dabis","is_ca":false},{"name":"Dominique Costagliola","is_ca":false},{"name":"Antonella d’Arminio Monforte","is_ca":false},{"name":"Frank de Wolf","is_ca":false},{"name":"Peter Reiss","is_ca":false},{"name":"Jens Lundgren","is_ca":false},{"name":"Amy C. Justice","is_ca":false},{"name":"Schlomo Staszewski","is_ca":false},{"name":"Catherine Leport","is_ca":false},{"name":"Robert S. Hogg","is_ca":true},{"name":"Caroline Sabin","is_ca":false},{"name":"M. John Gill","is_ca":true},{"name":"Bernd Salzberger","is_ca":false},{"name":"Jonathan A C Sterne","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03509085617758826,"gpt":0.2982483936321948,"spread":0.2631575374546065,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01101803,0.001075242,0.00208491,0.004035762,0.001246743,0.002074027,0.001339842,0.001247734,0.0007180982],"category_scores_gemma":[0.02503835,0.0007791997,0.002623494,0.006082406,0.0008588519,0.001314652,0.001690547,0.0007539324,0.0001212077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005794234,"about_ca_system_score_gemma":0.001337288,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006374615,"about_ca_topic_score_gemma":0.005569339,"domain_scores_codex":[0.9898397,0.005267683,0.001762934,0.001562692,0.00102885,0.0005382144],"domain_scores_gemma":[0.9580858,0.01521268,0.01671244,0.004310133,0.003054307,0.00262477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.0009147289,0.00001633583,0.994808,0.00005914723,0.002329746,0.00005119006,0.00008875352,0.00009337577,0.0001257694,0.00002107588,0.00007164498,0.00142037],"study_design_scores_gemma":[0.0001072938,0.0002689629,0.9956956,0.0000420756,0.002771087,0.0003089365,0.0002664096,0.000222616,0.00009933564,0.00005305425,0.0001424272,0.00002222841],"study_design_candidate":"meta_analysis","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910415,0.007271484,0.0002953282,0.0001134946,0.00001652413,0.00003544531,0.0009816021,0.000006650996,0.0002380098],"genre_scores_gemma":[0.9977138,0.001235259,0.0002270057,0.0000194707,0.00001540255,0.00001818592,0.000736373,0.0000038259,0.00003052728],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01101803,"threshold_uncertainty_score":0.05826956,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2126141460","doi":"10.1097/00002030-200309050-00005","title":"Dynamics of HIV viremia and antibody seroconversion in plasma donors","year":2003,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1305,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; University of Victoria","funders":"National Heart, Lung, and Blood Institute; U.S. Food and Drug Administration; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention","keywords":"Viremia; Seroconversion; Viral load; Virology; Antibody; Viral disease; Antigen; Immunology; Medicine; Human immunodeficiency virus (HIV); HIV Antigens; Viral replication; Biology; Virus","authors":[{"name":"Eberhard Fiebig","is_ca":false},{"name":"David J. Wright","is_ca":false},{"name":"B. D. Rawal","is_ca":false},{"name":"Patricia E. Garrett","is_ca":false},{"name":"Richard Schumacher","is_ca":false},{"name":"Lorraine Peddada","is_ca":false},{"name":"Charles M. Heldebrant","is_ca":false},{"name":"Richard Smith","is_ca":false},{"name":"Andrew Conrad","is_ca":false},{"name":"Steven Kleinman","is_ca":true},{"name":"Michael P. Busch","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006778547186798847,"gpt":0.2498449792061109,"spread":0.2430664320193121,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009732442,0.0001656073,0.000252173,0.0005040622,0.0002025668,0.0005253432,0.0002322263,0.0003319517,0.001031899],"category_scores_gemma":[0.003650053,0.0001762591,0.0001274306,0.0004061828,0.0002513075,0.0003399892,0.0001947097,0.0003176747,0.0003282104],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002818416,"about_ca_system_score_gemma":0.0002219323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001024638,"about_ca_topic_score_gemma":0.0005273329,"domain_scores_codex":[0.999552,0.0001052621,0.00003292549,0.0001291421,0.00009268185,0.00008799143],"domain_scores_gemma":[0.9983048,0.000477655,0.0006125014,0.0000944401,0.000227935,0.0002826136],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006603734,0.00004015321,0.9922541,0.00001069996,0.0000195938,0.0003260787,0.0001511939,0.0001151318,0.001674351,0.00003726194,0.000083832,0.00462715],"study_design_scores_gemma":[0.00001631134,0.0003632021,0.9958261,0.000006344997,0.00001681341,0.0019858,0.000123859,0.0004127834,0.0009304741,0.00005089742,0.0002606916,0.000006804176],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994043,0.0002065151,0.0001399944,0.00000876313,0.000001252556,0.000004485084,0.00007573504,0.000004503655,0.0001544598],"genre_scores_gemma":[0.9996055,0.00005881798,0.0001042667,0.000007161049,0.000004378668,0.000005084345,0.0001348978,9.894275e-7,0.00007890082],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001031899,"threshold_uncertainty_score":0.00514704,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1945834141","doi":"10.1038/35065118","title":"Skewed maturation of memory HIV-specific CD8 T lymphocytes","year":2001,"lang":"en","type":"article","venue":"Nature","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1009,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research; Medical Research Council Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"C-C chemokine receptor type 7; Cytotoxic T cell; CD8; Biology; Immunology; CD28; Cell biology; T cell; Immune system; Chemokine receptor; Chemokine; In vitro; Genetics","authors":[{"name":"Patrick Champagne","is_ca":false},{"name":"Graham S. Ogg","is_ca":false},{"name":"Abigail King","is_ca":false},{"name":"Christian Knabenhans","is_ca":false},{"name":"Kim Ellefsen","is_ca":false},{"name":"Massimo Nobile","is_ca":false},{"name":"Victor Appay","is_ca":false},{"name":"G. Paolo Rizzardi","is_ca":false},{"name":"Sylvain Fleury","is_ca":false},{"name":"Martin Lipp","is_ca":false},{"name":"Reinhold Förster","is_ca":false},{"name":"Sarah Rowland‐Jones","is_ca":false},{"name":"Rafick-P. Sékaly","is_ca":true},{"name":"Andrew J. McMichael","is_ca":false},{"name":"Giuseppe Pantaleo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009535794847562801,"gpt":0.2539888717713371,"spread":0.2444530769237743,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002581469,0.0002357707,0.000294285,0.0002172082,0.0002608867,0.0008664329,0.0002107994,0.0004015274,0.005844411],"category_scores_gemma":[0.0005668614,0.0001866524,0.0001487582,0.0001332809,0.0001801604,0.0003794019,0.0003588259,0.00148683,0.001362668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003146584,"about_ca_system_score_gemma":0.0002293829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00012545,"about_ca_topic_score_gemma":0.0001886902,"domain_scores_codex":[0.9996789,0.00006163248,0.00001636001,0.00005786882,0.0000512909,0.0001340614],"domain_scores_gemma":[0.9997737,0.00004688441,0.00002966835,0.0000451064,0.00004747133,0.00005721762],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001115079,0.0001341062,0.004102872,0.00009189795,0.00001630581,0.0004305275,0.0001070066,0.0002348828,0.946991,0.001627249,0.001650905,0.04349818],"study_design_scores_gemma":[0.0003661588,0.002429402,0.07272165,0.0001344707,0.0001140976,0.009019188,0.000587297,0.003301003,0.8559588,0.004943146,0.05038368,0.00004130269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882789,0.002774907,0.001620531,0.000265612,0.0001475797,0.00003041462,0.000234391,0.0001743598,0.006473278],"genre_scores_gemma":[0.9954802,0.000559253,0.000462797,0.0002427592,0.00006112584,0.00002035897,0.000213124,0.00006007347,0.002900288],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005844411,"threshold_uncertainty_score":0.01955152,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2083002978","doi":"10.1371/journal.ppat.1003618","title":"A Next-Generation Cleaved, Soluble HIV-1 Env Trimer, BG505 SOSIP.664 gp140, Expresses Multiple Epitopes for Broadly Neutralizing but Not Non-Neutralizing Antibodies","year":2013,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1006,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Aids Fonds; National Institutes of Health; International AIDS Vaccine Initiative","keywords":"Epitope; Gp41; Monoclonal antibody; Virology; Epitope mapping; Chemistry; Antibody; Neutralizing antibody; Conformational epitope; Viral envelope; Glycoprotein; Virus; Biology; Biochemistry; Immunology","authors":[{"name":"Rogier W. Sanders","is_ca":false},{"name":"Ronald Derking","is_ca":false},{"name":"Albert Cupo","is_ca":false},{"name":"Jean‐Philippe Julien","is_ca":false},{"name":"Anila Yasmeen","is_ca":false},{"name":"Natalia de Val","is_ca":false},{"name":"Helen J. Kim","is_ca":false},{"name":"Claudia Blattner","is_ca":false},{"name":"Alba Torrents de la Peña","is_ca":false},{"name":"Jacob Korzun","is_ca":false},{"name":"Michael Golabek","is_ca":false},{"name":"Kevin de los Reyes","is_ca":false},{"name":"Thomas J. Ketas","is_ca":false},{"name":"Marit J. van Gils","is_ca":false},{"name":"C. Richter King","is_ca":false},{"name":"Ian A. Wilson","is_ca":false},{"name":"Andrew B. Ward","is_ca":false},{"name":"Per Johan Klasse","is_ca":false},{"name":"John P. Moore","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0758215417074364,"gpt":0.2744256858085815,"spread":0.1986041441011451,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001577718,0.0004303965,0.0001557976,0.0001398007,0.0001062248,0.0002467313,0.0002773945,0.0003037366,0.0007155836],"category_scores_gemma":[0.0001013077,0.0001315254,0.00022312,0.0001210925,0.0001553257,0.0001590803,0.0001645006,0.0007174579,0.000387004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003792209,"about_ca_system_score_gemma":0.0001660442,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006363483,"about_ca_topic_score_gemma":0.0008377359,"domain_scores_codex":[0.9998851,0.00001614405,0.00001156299,0.00001937308,0.00004949968,0.00001839876],"domain_scores_gemma":[0.9999449,0.000007003755,0.0000212505,0.000007861508,0.000007299788,0.00001167104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000226808,0.00001522904,0.00008896377,0.000008748739,0.000002649592,0.00001961776,0.00000580961,0.00007350863,0.9991323,0.00004274806,0.00002337045,0.0005644219],"study_design_scores_gemma":[0.0000146053,0.0004285178,0.001584374,0.000002594196,0.00001895611,0.0003109858,0.00001490237,0.0008600533,0.9941903,0.00002513788,0.002544638,0.000004913285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914554,0.0004656872,0.00600788,0.00009163307,0.00002534723,0.00009069127,0.0005301212,0.00004997674,0.001283257],"genre_scores_gemma":[0.9675808,0.0006953611,0.02482979,0.0001012184,0.00001087122,0.00006664451,0.002682235,0.00003216203,0.004000906],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007155836,"threshold_uncertainty_score":0.00275147,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2122617162","doi":"10.1038/nature10696","title":"Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9","year":2011,"lang":"en","type":"article","venue":"Nature","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":849,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Basic Energy Sciences; National Center for Research Resources; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Ragon Institute of MGH, MIT and Harvard; Office of Science; National Institutes of Health; International AIDS Vaccine Initiative; U.S. Department of Energy","keywords":"Glycan; Virology; Glycosylation; Antibody; Glycoprotein; Biology; Neutralization; Sequence (biology); Protein structure; Computational biology; Virus; Genetics; Biochemistry","authors":[{"name":"Jason S. McLellan","is_ca":false},{"name":"Marie Pancera","is_ca":false},{"name":"Chris Carrico","is_ca":false},{"name":"Jason Gorman","is_ca":false},{"name":"Jean‐Philippe Julien","is_ca":false},{"name":"Reza Khayat","is_ca":false},{"name":"Robert K. Louder","is_ca":false},{"name":"Robert Pejchal","is_ca":false},{"name":"Mallika Sastry","is_ca":false},{"name":"Kaifan Dai","is_ca":false},{"name":"Sijy O’Dell","is_ca":false},{"name":"Nikita Patel","is_ca":false},{"name":"Syed Shahzad‐ul‐Hussan","is_ca":false},{"name":"Yongping Yang","is_ca":false},{"name":"Baoshan Zhang","is_ca":false},{"name":"Tongqing Zhou","is_ca":false},{"name":"Jiang Zhu","is_ca":false},{"name":"Jeffrey C. Boyington","is_ca":false},{"name":"Gwo‐Yu Chuang","is_ca":false},{"name":"Devan Diwanji","is_ca":false},{"name":"Ivelin S. Georgiev","is_ca":false},{"name":"Young Do Kwon","is_ca":false},{"name":"Doyung Lee","is_ca":false},{"name":"Mark K. Louder","is_ca":false},{"name":"Stephanie Moquin","is_ca":false},{"name":"Stephen D. Schmidt","is_ca":false},{"name":"Zhi-Yong Yang","is_ca":false},{"name":"Mattia Bonsignori","is_ca":false},{"name":"John A. Crump","is_ca":false},{"name":"Saidi Kapiga","is_ca":false},{"name":"Noel E. Sam","is_ca":false},{"name":"Barton F. Haynes","is_ca":false},{"name":"Dennis R. Burton","is_ca":false},{"name":"Wayne C. Koff","is_ca":false},{"name":"Laura M. Walker","is_ca":false},{"name":"Sanjay Phogat","is_ca":false},{"name":"Richard T. Wyatt","is_ca":false},{"name":"Jared Orwenyo","is_ca":false},{"name":"Lai‐Xi Wang","is_ca":false},{"name":"James Arthos","is_ca":false},{"name":"Carole A. Bewley","is_ca":false},{"name":"John R. Mascola","is_ca":false},{"name":"Gary J. Nabel","is_ca":false},{"name":"William R. Schief","is_ca":false},{"name":"Andrew B. Ward","is_ca":false},{"name":"Ian A. Wilson","is_ca":false},{"name":"Peter D. Kwong","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009180681910313224,"gpt":0.2624897704215493,"spread":0.2533090885112361,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008097752,0.0004415536,0.0003923523,0.0001435387,0.0005500899,0.0003827368,0.0008316954,0.0006019154,0.003464313],"category_scores_gemma":[0.000152829,0.0001902873,0.0003133788,0.0002154419,0.000245749,0.0003474453,0.0002447267,0.001236285,0.0007117775],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000994585,"about_ca_system_score_gemma":0.000596755,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005751787,"about_ca_topic_score_gemma":0.003581261,"domain_scores_codex":[0.9999326,0.000008932577,0.000002316187,0.00001395512,0.00001520315,0.00002689722],"domain_scores_gemma":[0.9999342,0.00001487209,0.00001586289,0.000003413458,0.000008755776,0.00002298079],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002747577,0.0004440086,0.002897521,0.000416699,0.0001124983,0.004138472,0.0002844315,0.01053312,0.9547428,0.005928341,0.006779947,0.01097463],"study_design_scores_gemma":[0.001294119,0.002375058,0.04753742,0.0002656985,0.0003546783,0.006628062,0.001275353,0.08704422,0.7411004,0.004596061,0.1073263,0.0002027133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9801338,0.002967554,0.004115726,0.000664542,0.0002041068,0.00007658883,0.001719951,0.0001944327,0.009923423],"genre_scores_gemma":[0.9883813,0.000822056,0.002239762,0.000394366,0.00002360754,0.00002082833,0.003095353,0.00002012184,0.005002623],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005751787,"threshold_uncertainty_score":0.01158929,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2000885937","doi":"10.1126/science.1245625","title":"Crystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer","year":2013,"lang":"en","type":"article","venue":"Science","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":826,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Cancer Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Trimer; Gp41; Chemistry; Epitope; Glycoprotein; Biophysics; Antibody; Biology; Biochemistry; Dimer","authors":[{"name":"Jean‐Philippe Julien","is_ca":false},{"name":"Albert Cupo","is_ca":false},{"name":"Devin Sok","is_ca":false},{"name":"Robyn L. Stanfield","is_ca":false},{"name":"Dmitry Lyumkis","is_ca":false},{"name":"Marc C. Deller","is_ca":false},{"name":"Per-Johan Klasse","is_ca":false},{"name":"Dennis R. Burton","is_ca":false},{"name":"Rogier W. Sanders","is_ca":false},{"name":"John P. Moore","is_ca":false},{"name":"Andrew B. Ward","is_ca":false},{"name":"Ian A. Wilson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01277131920286433,"gpt":0.2559951065303185,"spread":0.2432237873274542,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001953045,0.0003140692,0.000479237,0.0001460289,0.0005929318,0.000721637,0.0007143585,0.0006624509,0.002773029],"category_scores_gemma":[0.0003930235,0.0002417071,0.0001798967,0.0003215098,0.0002334123,0.0003819602,0.0002341347,0.001742216,0.0005125575],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009050122,"about_ca_system_score_gemma":0.00101563,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006047238,"about_ca_topic_score_gemma":0.007206577,"domain_scores_codex":[0.9998479,0.00001593296,0.000005250756,0.00002709729,0.00007882781,0.00002498597],"domain_scores_gemma":[0.9998578,0.00003122732,0.00002212704,0.000006907141,0.00004550412,0.00003638633],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002903193,0.001204191,0.01294408,0.000886376,0.0003127777,0.003692179,0.001098029,0.01909445,0.8378486,0.007746933,0.05330364,0.0589655],"study_design_scores_gemma":[0.002921198,0.003077754,0.1397623,0.0003352863,0.0006249259,0.007687871,0.00292569,0.2947279,0.3486611,0.008859484,0.1900706,0.0003458648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9665061,0.004910905,0.004781404,0.00220727,0.0002167545,0.0001026539,0.005553897,0.0005102523,0.01521092],"genre_scores_gemma":[0.9417288,0.003474982,0.01761413,0.0009671085,0.0000814852,0.0001092676,0.02467676,0.0001568208,0.01119073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006047238,"threshold_uncertainty_score":0.0120241,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2052937459","doi":"10.1126/science.1234150","title":"Rational HIV Immunogen Design to Target Specific Germline B Cell Receptors","year":2013,"lang":"en","type":"article","venue":"Science","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":811,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Cancer Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Immunogen; Germline; Epitope; Virology; Biology; Antibody; Cell biology; Genetics; Monoclonal antibody; Gene","authors":[{"name":"Joseph G. Jardine","is_ca":false},{"name":"Jean‐Philippe Julien","is_ca":false},{"name":"Sergey Menis","is_ca":false},{"name":"Takayuki Ota","is_ca":false},{"name":"Oleksandr Kalyuzhniy","is_ca":false},{"name":"Andrew T. McGuire","is_ca":false},{"name":"Devin Sok","is_ca":false},{"name":"Po‐Ssu Huang","is_ca":false},{"name":"Skye MacPherson","is_ca":false},{"name":"Meaghan Jones","is_ca":false},{"name":"Travis Nieusma","is_ca":false},{"name":"John C. Mathison","is_ca":false},{"name":"David Baker","is_ca":false},{"name":"Andrew B. Ward","is_ca":false},{"name":"Dennis R. Burton","is_ca":false},{"name":"Leonidas Stamatatos","is_ca":false},{"name":"David Nemazee","is_ca":false},{"name":"Ian A. Wilson","is_ca":false},{"name":"William R. Schief","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02031159889670068,"gpt":0.2508711034385146,"spread":0.2305595045418139,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002039675,0.0003390328,0.0002442996,0.0002417709,0.0001346689,0.0003032228,0.00031748,0.0002999516,0.0008958025],"category_scores_gemma":[0.000165276,0.0002127403,0.0001880381,0.0001570788,0.0001993425,0.0002218686,0.0002599843,0.0004493131,0.0003333681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003178874,"about_ca_system_score_gemma":0.0002699019,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000217108,"about_ca_topic_score_gemma":0.000500767,"domain_scores_codex":[0.9999163,0.00001689581,0.000004997039,0.00001482107,0.00002156008,0.00002538798],"domain_scores_gemma":[0.9999559,0.000009687868,0.00001159153,0.000005286129,0.00000810626,0.000009409472],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001314038,0.000217131,0.0003779327,0.000152794,0.00001456917,0.0001954389,0.00004054721,0.01472011,0.9652789,0.004728698,0.0003767847,0.01376563],"study_design_scores_gemma":[0.0001777321,0.001275121,0.000472964,0.00002133065,0.00002472851,0.0002964298,0.00003745031,0.03171863,0.9536545,0.001114335,0.01118986,0.00001687376],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9346468,0.001681882,0.05545618,0.0002757878,0.00006684219,0.0003330598,0.0002107955,0.0002044965,0.007124162],"genre_scores_gemma":[0.9320179,0.001736046,0.0632665,0.0002258631,0.00001171882,0.0001963795,0.0002148578,0.00005109969,0.002279536],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008958025,"threshold_uncertainty_score":0.002996743,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2102548388","doi":"10.1128/jvi.75.22.10892-10905.2001","title":"Broadly Neutralizing Antibodies Targeted to the Membrane-Proximal External Region of Human Immunodeficiency Virus Type 1 Glycoprotein gp41","year":2001,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":782,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Deutsches Krebsforschungszentrum; National Institutes of Health; Hearst Foundations","keywords":"Epitope; Gp41; Monoclonal antibody; Biology; Virology; Glycoprotein; Linear epitope; Antibody; Epitope mapping; Molecular biology; Conformational epitope; Neutralizing antibody; Virus; Recombinant DNA; Biochemistry; Immunology; Gene","authors":[{"name":"Michael B. Zwick","is_ca":false},{"name":"Aran F. Labrijn","is_ca":false},{"name":"Meng Wang","is_ca":false},{"name":"Catherine Spenlehauer","is_ca":false},{"name":"Erica Ollmann Saphire","is_ca":false},{"name":"James Μ. Binley","is_ca":false},{"name":"John P. Moore","is_ca":false},{"name":"Gabriela Stiegler","is_ca":false},{"name":"Hermann Katinger","is_ca":false},{"name":"Dennis R. Burton","is_ca":false},{"name":"Paul W.H.I. Parren","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02710039626513931,"gpt":0.2972148738846824,"spread":0.2701144776195431,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002115293,0.0007074553,0.0003695156,0.0002734035,0.0001411028,0.0003178971,0.0003544304,0.0006342608,0.0009069606],"category_scores_gemma":[0.0002047004,0.000188164,0.0003167529,0.0001428408,0.0001883154,0.0001936569,0.0003215313,0.0006729834,0.0003085766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003235466,"about_ca_system_score_gemma":0.0001385386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00037144,"about_ca_topic_score_gemma":0.0004160165,"domain_scores_codex":[0.9997328,0.00004481018,0.00002103906,0.00005936204,0.0000465504,0.00009530649],"domain_scores_gemma":[0.9998897,0.00003169735,0.00002172152,0.0000150522,0.0000211465,0.00002069014],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003508366,0.00003928764,0.0003139351,0.00002265767,0.000006121642,0.0000376662,0.000007462308,0.0000704909,0.9972526,0.00004487388,0.00002433857,0.002145499],"study_design_scores_gemma":[0.000085364,0.001317779,0.01236322,0.00002061525,0.00006152838,0.001218393,0.00003059827,0.001876947,0.9799913,0.0001317674,0.002891888,0.00001047339],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.987988,0.001303704,0.008751259,0.00005481791,0.00002708892,0.00007803092,0.0001172075,0.0001107279,0.001569091],"genre_scores_gemma":[0.9902835,0.001095098,0.006495831,0.000185433,0.00002690102,0.00007471822,0.0004306114,0.00001250857,0.001395396],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009069606,"threshold_uncertainty_score":0.003034115,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1767940945","doi":"10.1016/s0140-6736(09)60612-7","title":"Timing of initiation of antiretroviral therapy in AIDS-free HIV-1-infected patients: a collaborative analysis of 18 HIV cohort studies","year":2009,"lang":"en","type":"review","venue":"The Lancet","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":746,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Cilag; Medical Research Council; Universität Zürich; Simon Fraser University; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Institut National de la Santé et de la Recherche Médicale; University College London; Office of Research and Development; Gilead Sciences; Styrelsen för Internationellt Utvecklingssamarbete; Michael Smith Health Research BC; Economic and Social Research Council; Stichting HIV Monitoring; Universität zu Köln; European Commission; University of Bern; GlaxoSmithKline; Bristol-Myers Squibb; Pfizer; Canadian Institutes of Health Research; National Science Foundation","keywords":"Medicine; Antiretroviral therapy; Cohort; Cohort study; Internal medicine; Prospective cohort study; Human immunodeficiency virus (HIV); Combination therapy; Viral load; Pediatrics; Immunology","authors":[{"name":"Jonathan A C Sterne","is_ca":false},{"name":"Margaret May","is_ca":false},{"name":"Dominique Costagliola","is_ca":false},{"name":"Frank de Wolf","is_ca":false},{"name":"Andrew Phillips","is_ca":false},{"name":"Ross Harris","is_ca":false},{"name":"Michele Jönsson Funk","is_ca":false},{"name":"Ronald B. Geskus","is_ca":false},{"name":"M. John Gill","is_ca":false},{"name":"François Dabis","is_ca":false},{"name":"José M. Miró","is_ca":false},{"name":"Amy C. Justice","is_ca":false},{"name":"Bruno Ledergerber","is_ca":false},{"name":"Gerd Fätkenheuer","is_ca":false},{"name":"Robert S Hogg","is_ca":false},{"name":"Antonella d’Arminio Monforte","is_ca":false},{"name":"Michael S Saag","is_ca":false},{"name":"Colette Smith","is_ca":false},{"name":"Schlomo Staszewski","is_ca":false},{"name":"Matthias Egger","is_ca":false},{"name":"Stephen R. Cole","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07149622035314167,"gpt":0.3713139281935489,"spread":0.2998177078404072,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00331475,0.0007615892,0.002649802,0.002400254,0.0001593026,0.0008432865,0.001139112,0.0006219661,0.0006798122],"category_scores_gemma":[0.005595308,0.0004064615,0.001903548,0.004555312,0.00020638,0.0005511703,0.0004884553,0.0006129973,0.0001175192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006781585,"about_ca_system_score_gemma":0.001966789,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00426157,"about_ca_topic_score_gemma":0.008427505,"domain_scores_codex":[0.9985744,0.0003297535,0.0003873366,0.0003062613,0.0003196971,0.00008253301],"domain_scores_gemma":[0.9942563,0.003367128,0.001622246,0.0001524602,0.0004315064,0.0001703729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.003284436,0.00008638107,0.1647092,0.03774921,0.0214832,0.0006317632,0.000194234,0.001055893,0.0007233219,0.0005079607,0.008362394,0.761212],"study_design_scores_gemma":[0.001156967,0.001486106,0.7498975,0.03763632,0.08153594,0.006190728,0.0007134893,0.001016258,0.001372362,0.001772026,0.116975,0.0002473799],"study_design_candidate":"meta_analysis","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005433748,0.9937325,0.0002066882,0.0001101139,0.00008352788,0.00001052838,0.0002906753,0.000004624183,0.0001275299],"genre_scores_gemma":[0.03937471,0.9586345,0.001013912,0.0001259964,0.0001312483,0.00002554865,0.0005941985,0.000004748039,0.00009504741],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.00426157,"threshold_uncertainty_score":0.01753026,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016264635","doi":"10.1001/jama.286.20.2568","title":"Rates of Disease Progression by Baseline CD4 Cell Count and Viral Load After Initiating Triple-Drug Therapy","year":2001,"lang":"en","type":"article","venue":"JAMA","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":734,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"Medicine; Internal medicine; Viral load; Mortality rate; Confidence interval; Immunology; Population; Protease inhibitor (pharmacology); Antiretroviral therapy; Virus","authors":[{"name":"Robert S. Hogg","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01094419365411729,"gpt":0.2824150868462115,"spread":0.2714708931920942,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000902307,0.0001586397,0.000267352,0.0008314743,0.0002377098,0.0005311227,0.0002833726,0.0003847912,0.001318609],"category_scores_gemma":[0.004371392,0.0001137567,0.0003632956,0.0004897696,0.000174552,0.0003446583,0.0002981028,0.0008156314,0.0003370283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004596626,"about_ca_system_score_gemma":0.0003571577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005169506,"about_ca_topic_score_gemma":0.005271538,"domain_scores_codex":[0.9994864,0.0001187656,0.00004180226,0.0001080278,0.000149642,0.00009529173],"domain_scores_gemma":[0.9960397,0.0009777478,0.001753637,0.0002337424,0.0005190725,0.000475991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004556877,0.00002046229,0.9941226,0.00001394198,0.00005649724,0.00006046183,0.00004738738,0.0003047119,0.0002849147,0.0000268657,0.0002321362,0.004374322],"study_design_scores_gemma":[0.000009971496,0.0001065218,0.9983444,0.000008120936,0.0000207156,0.0003261709,0.00003212438,0.0007416469,0.0001704476,0.00004264553,0.0001912219,0.000005941517],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997509,0.0005345315,0.0002359346,0.00005426962,0.000004129227,0.00001462021,0.0009468198,0.00001719957,0.0006834497],"genre_scores_gemma":[0.9982349,0.0001713369,0.000117972,0.00001589615,0.000007070134,0.00001159632,0.001185438,0.000002924245,0.0002530506],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005169506,"threshold_uncertainty_score":0.01027882,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2144975624","doi":"10.1126/science.1256739","title":"The early spread and epidemic ignition of HIV-1 in human populations","year":2014,"lang":"en","type":"article","venue":"Science","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":722,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Allergy and Infectious Diseases; National Human Genome Research Institute; Medical Research Council; National Institute for Health and Care Research; Wellcome Trust","keywords":"Transmission (telecommunications); Pandemic; Population; Human immunodeficiency virus (HIV); Demography; Geography; Epidemiological transition; Epidemiology; Virology; Biology; Coronavirus disease 2019 (COVID-19); Medicine; Sociology","authors":[{"name":"Nuno R. Faria","is_ca":false},{"name":"Andrew Rambaut","is_ca":false},{"name":"Marc A. Suchard","is_ca":false},{"name":"Guy Baele","is_ca":false},{"name":"Trevor Bedford","is_ca":false},{"name":"Melissa J. Ward","is_ca":false},{"name":"Andrew J. Tatem","is_ca":false},{"name":"João Sousa","is_ca":false},{"name":"Nimalan Arinaminpathy","is_ca":false},{"name":"Jacques Pépin","is_ca":true},{"name":"David Posada","is_ca":false},{"name":"Martine Peeters","is_ca":false},{"name":"Oliver G. Pybus","is_ca":false},{"name":"Philippe Lemey","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03345246551312736,"gpt":0.3201273410842467,"spread":0.2866748755711193,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00113587,0.0001305448,0.0001211691,0.0009547744,0.000869145,0.001082024,0.0002208303,0.0002858797,0.001028736],"category_scores_gemma":[0.004286437,0.0001390334,0.00008321671,0.0008292664,0.001532376,0.001142613,0.0006369016,0.000566983,0.0002036006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009179819,"about_ca_system_score_gemma":0.0006360099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01721745,"about_ca_topic_score_gemma":0.02093258,"domain_scores_codex":[0.9996313,0.0001614596,0.0000183208,0.00008895822,0.0000469538,0.00005300749],"domain_scores_gemma":[0.9985545,0.0004551366,0.0005664678,0.0001432799,0.0001687955,0.0001117451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001740187,0.00003987277,0.9244593,0.0001097172,0.00004621403,0.0003323443,0.007813943,0.001329967,0.008602443,0.01104376,0.0004540438,0.04559443],"study_design_scores_gemma":[0.000002372306,0.00006178005,0.9864172,0.00009126137,0.00001751692,0.0004066701,0.003866438,0.0008830847,0.001638109,0.003264288,0.003329311,0.00002193295],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935213,0.001686723,0.001557908,0.0002760215,0.000006927793,0.000007104652,0.0001818807,0.000006218431,0.002755932],"genre_scores_gemma":[0.9987487,0.0006142388,0.0004000014,0.00002539727,0.000008412885,0.000003631563,0.0000422388,0.000001417918,0.0001559179],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01721745,"threshold_uncertainty_score":0.03423446,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999483871","doi":"10.1126/science.1245627","title":"Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer","year":2013,"lang":"en","type":"article","venue":"Science","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":709,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Trimer; Chemistry; Antigenicity; Glycoprotein; Infectivity; Immunoglobulin Fab Fragments; Biophysics; Antibody; Virology; Crystallography; Virus; Peptide sequence; Biology; Biochemistry; Genetics","authors":[{"name":"Dmitry Lyumkis","is_ca":false},{"name":"Jean‐Philippe Julien","is_ca":false},{"name":"Natalia de Val","is_ca":false},{"name":"Albert Cupo","is_ca":false},{"name":"Clinton S. Potter","is_ca":false},{"name":"Per-Johan Klasse","is_ca":false},{"name":"Dennis R. Burton","is_ca":false},{"name":"Rogier W. Sanders","is_ca":false},{"name":"John P. Moore","is_ca":false},{"name":"Bridget Carragher","is_ca":false},{"name":"Ian A. Wilson","is_ca":false},{"name":"Andrew B. Ward","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01085715458381893,"gpt":0.2485637774608344,"spread":0.2377066228770155,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001603504,0.0004467289,0.0002309982,0.0002000428,0.0007520491,0.0004316188,0.0008321572,0.001165408,0.00450445],"category_scores_gemma":[0.0002408279,0.0003235679,0.0002912201,0.0002864717,0.0004672897,0.0006385444,0.0002953153,0.001489528,0.0007668936],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008284596,"about_ca_system_score_gemma":0.0007113524,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008957396,"about_ca_topic_score_gemma":0.008422263,"domain_scores_codex":[0.9999461,0.000005654721,0.000002396306,0.000009680496,0.00002132047,0.00001487748],"domain_scores_gemma":[0.9998909,0.00002942043,0.00001743808,0.000008450875,0.00002927682,0.0000245253],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00437841,0.001305318,0.01858098,0.002155095,0.0006246606,0.01185516,0.001760127,0.1389471,0.7181752,0.01376456,0.05819914,0.03025417],"study_design_scores_gemma":[0.0006529395,0.001735026,0.1758218,0.0007115175,0.0004855016,0.007956032,0.002706733,0.5531344,0.1695055,0.008030646,0.07895914,0.0003007011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9459259,0.004092423,0.01455219,0.002894123,0.0002202689,0.0001039747,0.006794709,0.001004998,0.02441155],"genre_scores_gemma":[0.9570351,0.00401279,0.02069044,0.0006054228,0.00004821838,0.00008585861,0.01008301,0.0002229096,0.007216133],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008957396,"threshold_uncertainty_score":0.01781052,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064416623","doi":"10.1126/science.1256304","title":"Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection","year":2014,"lang":"en","type":"article","venue":"Science","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":707,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Institució Catalana de Recerca i Estudis Avançats","keywords":"Virology; Biology; Gene; Persistence (discontinuity); Viral replication; Virus; Human immunodeficiency virus (HIV); Cell growth; Cancer; Genetics","authors":[{"name":"Thor A. Wagner","is_ca":false},{"name":"Sherry McLaughlin","is_ca":false},{"name":"Kavita S. Garg","is_ca":false},{"name":"Charles Y. K. Cheung","is_ca":false},{"name":"Brendan B. Larsen","is_ca":false},{"name":"Sheila Styrchak","is_ca":false},{"name":"Hannah C. Huang","is_ca":false},{"name":"Paul T. Edlefsen","is_ca":false},{"name":"James I. Mullins","is_ca":false},{"name":"Lisa M. Frenkel","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00889625068257605,"gpt":0.2594980826203817,"spread":0.2506018319378056,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007587904,0.000147797,0.0002413554,0.0006023176,0.0004326521,0.0007688302,0.0001641443,0.0002793028,0.001313823],"category_scores_gemma":[0.002021508,0.0001927278,0.0001725456,0.0004861706,0.0003183508,0.0003121851,0.0003289883,0.0003613828,0.0001493942],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001849183,"about_ca_system_score_gemma":0.0002156311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001231368,"about_ca_topic_score_gemma":0.001627556,"domain_scores_codex":[0.9997259,0.00008659623,0.0000175486,0.00004601157,0.00007151698,0.00005248707],"domain_scores_gemma":[0.9990923,0.0002905433,0.0003043781,0.00007406955,0.0001346654,0.0001038856],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006257659,0.0001367122,0.9308072,0.00006732165,0.00004946629,0.00025358,0.0009826605,0.0001403216,0.04168225,0.00009698561,0.0001095582,0.02504806],"study_design_scores_gemma":[0.000007109864,0.000311641,0.993888,0.00002014881,0.00004228848,0.0006442128,0.0004824779,0.0001792348,0.003750498,0.0001120842,0.0005571288,0.000005260504],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989769,0.0004336815,0.0001229996,0.00001978595,0.000002827823,0.000005644043,0.00003475581,0.000002479629,0.0004008527],"genre_scores_gemma":[0.999261,0.0002627567,0.0001207995,0.00001852414,0.000009549677,0.000009585829,0.00005255094,0.000001799824,0.0002634515],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001313823,"threshold_uncertainty_score":0.004395247,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2128579789","doi":"10.1126/science.1213256","title":"A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield","year":2011,"lang":"en","type":"article","venue":"Science","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":704,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Cancer Institute; Canadian Institutes of Health Research; Engineering and Physical Sciences Research Council; National Institute of Allergy and Infectious Diseases","keywords":"Glycan; Antibody; Neutralization; Immunoglobulin Fab Fragments; Chemistry; Binding site; Neutralizing antibody; Virology; Glycoprotein; Biology; Immunoglobulin light chain; Biochemistry; Complementarity determining region; Immunology","authors":[{"name":"Robert Pejchal","is_ca":false},{"name":"Katie J. Doores","is_ca":false},{"name":"Laura M. Walker","is_ca":false},{"name":"Reza Khayat","is_ca":false},{"name":"Po‐Ssu Huang","is_ca":false},{"name":"Sheng‐Kai Wang","is_ca":false},{"name":"Robyn L. Stanfield","is_ca":false},{"name":"Jean‐Philippe Julien","is_ca":false},{"name":"Alejandra Ramos","is_ca":false},{"name":"Max Crispin","is_ca":false},{"name":"Rafael S. Depetris","is_ca":false},{"name":"Umesh Katpally","is_ca":false},{"name":"Andre J. Marozsan","is_ca":false},{"name":"Albert Cupo","is_ca":false},{"name":"Sébastien Maloveste","is_ca":false},{"name":"Yan Liu","is_ca":false},{"name":"Ryan McBride","is_ca":false},{"name":"Yukishige Ito","is_ca":false},{"name":"Rogier W. Sanders","is_ca":false},{"name":"Cassandra Ogohara","is_ca":false},{"name":"James C. Paulson","is_ca":false},{"name":"Ten Feizi","is_ca":false},{"name":"Christopher N. Scanlan","is_ca":false},{"name":"Chi‐Huey Wong","is_ca":false},{"name":"John P. Moore","is_ca":false},{"name":"William C. Olson","is_ca":false},{"name":"Andrew B. Ward","is_ca":false},{"name":"Pascal Poignard","is_ca":false},{"name":"William R. Schief","is_ca":false},{"name":"Dennis R. Burton","is_ca":false},{"name":"Ian A. Wilson","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03504596051319639,"gpt":0.2852055924159718,"spread":0.2501596319027755,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001831854,0.0003357111,0.000208327,0.0002266,0.0001078807,0.0002702119,0.0002213119,0.0003231773,0.0006258073],"category_scores_gemma":[0.0001012529,0.0001250593,0.0001703436,0.0001067136,0.000232234,0.0001448714,0.0002851311,0.0005145886,0.000273379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002289009,"about_ca_system_score_gemma":0.0001612251,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003683387,"about_ca_topic_score_gemma":0.0004862348,"domain_scores_codex":[0.9998937,0.00001300167,0.000003179956,0.00001637386,0.00003725267,0.00003640482],"domain_scores_gemma":[0.9999608,0.000006601055,0.00000596977,0.000004574083,0.000004935849,0.00001718599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003877423,0.00003199382,0.0004679218,0.00002378579,0.00000583565,0.00005959974,0.0000107235,0.0001364999,0.9933202,0.0001719888,0.00005137192,0.005681334],"study_design_scores_gemma":[0.00006299073,0.001522772,0.01170782,0.00001460703,0.00002643062,0.001914442,0.00002997633,0.001331187,0.9775066,0.0002848741,0.005591959,0.000006241384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888282,0.00216883,0.004443414,0.00008279114,0.00001332823,0.000038125,0.00006950986,0.00007928577,0.004276575],"genre_scores_gemma":[0.9964327,0.0004819717,0.001897845,0.00009019762,0.00001067105,0.000007264844,0.000107969,0.000005470973,0.0009659661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006258073,"threshold_uncertainty_score":0.002093554,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2097135837","doi":"10.1172/jci26032","title":"Endocytosis of HIV-1 activates plasmacytoid dendritic cells via Toll-like receptor- viral RNA interactions","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":661,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Center for AIDS Research, University of Washington; York University; Wellcome Trust; Fondation pour la Recherche Médicale; Institut National de la Santé et de la Recherche Médicale; National Cancer Institute; School of Medicine, New York University; National Institutes of Health; Yale University; Cancer Research Institute","keywords":"TLR7; TLR3; RNA; Biology; Endosome; Viral envelope; Endocytosis; Plasmacytoid dendritic cell; Cell biology; Interferon; Toll-like receptor; Virology; Virus; Innate immune system; Immune system; Receptor; Dendritic cell; Immunology; Gene; Genetics; Intracellular","authors":[{"name":"Anne‐Sophie Beignon","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05002535495958479,"gpt":0.3543757530537523,"spread":0.3043503980941675,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001300983,0.0003019681,0.0002698077,0.0001812967,0.0001989751,0.0004591772,0.0001444669,0.0003276946,0.001027094],"category_scores_gemma":[0.00014511,0.0001707987,0.0003998749,0.0001037627,0.0001402074,0.0002376385,0.0003715294,0.0004422543,0.0005186601],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006020138,"about_ca_system_score_gemma":0.0003245655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002879259,"about_ca_topic_score_gemma":0.0003536991,"domain_scores_codex":[0.9998059,0.00003906113,0.000011451,0.00002466794,0.00006020019,0.00005884879],"domain_scores_gemma":[0.9999387,0.00002182275,0.00000984212,0.000007742086,0.000009617869,0.0000121797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009976235,0.00001861631,0.0002944713,0.0000549529,0.00000641539,0.0001072143,0.00001695459,0.0001194368,0.9963686,0.0002954274,0.00006698647,0.002551112],"study_design_scores_gemma":[0.00005067572,0.0001939922,0.003996762,0.00001269995,0.00001779287,0.0005218345,0.00004493282,0.002671023,0.988012,0.0003619971,0.004109377,0.000006970806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9853989,0.004151509,0.006066999,0.0002651387,0.00004323897,0.00006430795,0.0002394095,0.0001092159,0.003661272],"genre_scores_gemma":[0.9923155,0.001950983,0.003545277,0.00009498522,0.00002216487,0.00003393188,0.0002519561,0.0000101663,0.001774958],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001027094,"threshold_uncertainty_score":0.004367888,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2147547300","doi":"10.1086/512088","title":"High Rates of Forward Transmission Events after Acute/Early HIV‐1 Infection","year":2007,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":651,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Institut National de Santé Publique du Québec; Hôtel-Dieu de Montréal; Fonds de Recherche du Québec - Santé; Hôpital Saint-Luc; McGill University Health Centre; Hôpital Notre-Dame; Université de Montréal; Jewish General Hospital","funders":"","keywords":"Human immunodeficiency virus (HIV); Transmission (telecommunications); Virology; Medicine; Computer science; Telecommunications","authors":[{"name":"Bluma Brenner","is_ca":true},{"name":"Michel Roger","is_ca":true},{"name":"Jean‐Pierre Routy","is_ca":true},{"name":"Daniela Moïsi","is_ca":true},{"name":"Michel Ntemgwa","is_ca":true},{"name":"Claudine Matte","is_ca":true},{"name":"Jean‐Guy Baril","is_ca":false},{"name":"Réjean Thomas","is_ca":false},{"name":"Danielle Rouleau","is_ca":true},{"name":"Julie Bruneau","is_ca":true},{"name":"Roger LeBlanc","is_ca":false},{"name":"Mario Legault","is_ca":true},{"name":"Cécile Tremblay","is_ca":true},{"name":"Hugues Charest","is_ca":true},{"name":"Mark A. Wainberg","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006150040105104239,"gpt":0.267437763360965,"spread":0.2612877232558607,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007006226,0.0001934012,0.0002224772,0.0008030093,0.0008837036,0.0006642014,0.0005559166,0.0004632684,0.002956112],"category_scores_gemma":[0.002694802,0.000143949,0.0001351746,0.0006199214,0.0004582869,0.0003082945,0.0002937551,0.0004322295,0.0002348414],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001672609,"about_ca_system_score_gemma":0.001006076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1585559,"about_ca_topic_score_gemma":0.1550008,"domain_scores_codex":[0.9994094,0.0001109136,0.00002494602,0.0001297382,0.0001389317,0.0001860667],"domain_scores_gemma":[0.9980456,0.0004156822,0.000758475,0.0001397177,0.0003901525,0.0002504004],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000081514,0.00002030004,0.9940953,0.00001754943,0.00002415209,0.0001634733,0.0003725777,0.000169141,0.0007574681,0.0001155372,0.0002234309,0.003959445],"study_design_scores_gemma":[0.00000396318,0.00003463408,0.9982349,0.00001115309,0.000008387732,0.0004587338,0.0002316056,0.0005934184,0.0001593623,0.00006067593,0.000198366,0.000004829668],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985124,0.0002081197,0.0003229825,0.00005197037,0.000002466474,0.00001957065,0.0003132443,0.00001238293,0.0005568787],"genre_scores_gemma":[0.9995168,0.00005711113,0.0001323648,0.00001438859,0.000003773888,0.000003787019,0.0001515732,0.000001886814,0.0001181888],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1585559,"threshold_uncertainty_score":0.3152661,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2122210861","doi":"10.1128/jvi.02108-09","title":"Tiered Categorization of a Diverse Panel of HIV-1 Env Pseudoviruses for Assessment of Neutralizing Antibodies","year":2009,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":646,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institutes of Health; Tulane University; York University; Henry M. Jackson Foundation; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation","keywords":"Neutralization; Virology; Biology; Antibody; Virus; Lentivirus; Human immunodeficiency virus (HIV); Neutralizing antibody; Viral disease; Immunology","authors":[{"name":"Michael S. Seaman","is_ca":false},{"name":"Holly Janes","is_ca":false},{"name":"Natalie Hawkins","is_ca":false},{"name":"Lauren E. Grandpre","is_ca":false},{"name":"Colleen Devoy","is_ca":false},{"name":"Ayush Giri","is_ca":false},{"name":"Rory Coffey","is_ca":false},{"name":"Linda Harris","is_ca":false},{"name":"Blake Wood","is_ca":false},{"name":"Marcus Daniels","is_ca":false},{"name":"Tanmoy Bhattacharya","is_ca":false},{"name":"Alan S. Lapedes","is_ca":false},{"name":"Victoria R. Polonis","is_ca":false},{"name":"Francine E. McCutchan","is_ca":false},{"name":"Peter B. Gilbert","is_ca":false},{"name":"Steve Self","is_ca":false},{"name":"Bette Korber","is_ca":false},{"name":"David C. Montefiori","is_ca":false},{"name":"John R. Mascola","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06140146892418777,"gpt":0.3450737986202293,"spread":0.2836723296960415,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007742632,0.0005576704,0.0004888908,0.001097591,0.0002596313,0.0006047497,0.0003052986,0.0004273307,0.0006817043],"category_scores_gemma":[0.0008912706,0.0001959557,0.0004575656,0.0007703424,0.000215612,0.0003618018,0.0005221349,0.0004657905,0.0003385058],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002949723,"about_ca_system_score_gemma":0.0001826471,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00120405,"about_ca_topic_score_gemma":0.001360305,"domain_scores_codex":[0.9988403,0.0003023842,0.0001617679,0.0002085865,0.0003501921,0.0001367508],"domain_scores_gemma":[0.9995832,0.000093929,0.00008084423,0.00007029471,0.0001210466,0.00005073849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001972672,0.0000727709,0.007627682,0.00004734588,0.00003674534,0.00002337666,0.00006055861,0.0007399929,0.9877137,0.00006747856,0.00003529602,0.003377761],"study_design_scores_gemma":[0.00003051293,0.003478992,0.3258346,0.00003898382,0.0002343037,0.00126958,0.0004354519,0.02269896,0.6422807,0.0007826766,0.002843453,0.00007174697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9869108,0.0005762688,0.01006564,0.00002544014,0.00001012394,0.0003510761,0.0009784211,0.00009110411,0.0009911065],"genre_scores_gemma":[0.9623258,0.0004812323,0.03094158,0.0001471576,0.00001029202,0.0003292517,0.005004717,0.0000395227,0.0007205289],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00120405,"threshold_uncertainty_score":0.004094779,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088968901","doi":"10.1371/journal.ppat.1000852","title":"Exposure to HIV-1 Directly Impairs Mucosal Epithelial Barrier Integrity Allowing Microbial Translocation","year":2010,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":594,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; University of Toronto; McMaster University","funders":"Canadian Institutes of Health Research; Ontario HIV Treatment Network; Hamilton Health Sciences; Canadian Foundation for AIDS Research","keywords":"Tight junction; Barrier function; Occludin; Biology; Epithelium; Intestinal permeability; Cell biology; Chromosomal translocation; Immunology; Microbiology; Biochemistry","authors":[{"name":"Aisha Nazli","is_ca":true},{"name":"Olivia Chan","is_ca":true},{"name":"Wendy N. Dobson-Belaire","is_ca":true},{"name":"Michel Ouellet","is_ca":true},{"name":"Michel J. Tremblay","is_ca":true},{"name":"Scott D. Gray‐Owen","is_ca":true},{"name":"A. Larry Arsenault","is_ca":true},{"name":"Charu Kaushic","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01346141570723703,"gpt":0.2466985950793983,"spread":0.2332371793721612,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001279363,0.0002265933,0.0002818755,0.0001123286,0.0001518544,0.0004588357,0.0001467172,0.0004162817,0.001984608],"category_scores_gemma":[0.0001535883,0.0001364612,0.0002785165,0.00008607482,0.0001417412,0.000190746,0.0002377529,0.0006683905,0.0003179589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001368062,"about_ca_system_score_gemma":0.0001132564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003395765,"about_ca_topic_score_gemma":0.0004646642,"domain_scores_codex":[0.9997745,0.00006048453,0.00001491578,0.00002529822,0.00005942036,0.00006539319],"domain_scores_gemma":[0.9999086,0.00002516018,0.0000214601,0.00001843027,0.00001229659,0.00001407981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009893631,0.0000412821,0.0004912567,0.00005979306,0.000009097917,0.0001208825,0.00002799108,0.00002598549,0.9977279,0.00003611116,0.00003990578,0.00132088],"study_design_scores_gemma":[0.00001134235,0.002213687,0.04309444,0.00003332012,0.0000383626,0.001259798,0.0002330953,0.0004947134,0.9493415,0.0001099925,0.003159974,0.000009836886],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935721,0.00423045,0.0007204275,0.0001744146,0.00003123465,0.00002397273,0.0002110617,0.00002758103,0.001008764],"genre_scores_gemma":[0.9952726,0.002412152,0.0007466234,0.0001123063,0.00001801194,0.00002233437,0.0002588764,0.000003652082,0.001153481],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001984608,"threshold_uncertainty_score":0.006639123,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166730438","doi":"10.1126/science.aac4223","title":"HIV-1 neutralizing antibodies induced by native-like envelope trimers","year":2015,"lang":"en","type":"article","venue":"Science","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":524,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Public Health Service; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; International AIDS Vaccine Initiative; National Institute of General Medical Sciences; Aids Fonds; McKnight Foundation; National Cancer Institute; United States Agency for International Development; National Institutes of Health; Bill and Melinda Gates Foundation","keywords":"Immunogen; Epitope; Antibody; Virology; Glycoprotein; Biology; Human immunodeficiency virus (HIV); Neutralizing antibody; AIDS Vaccines; Virus; Immunology; Genetics; Monoclonal antibody; Vaccine trial","authors":[{"name":"Rogier W. Sanders","is_ca":false},{"name":"Marit J. van Gils","is_ca":false},{"name":"Ronald Derking","is_ca":false},{"name":"Devin Sok","is_ca":false},{"name":"Thomas J. Ketas","is_ca":false},{"name":"Judith A. Burger","is_ca":false},{"name":"Gabriel Ozorowski","is_ca":false},{"name":"Albert Cupo","is_ca":false},{"name":"Cassandra A. Simonich","is_ca":false},{"name":"Leslie Goo","is_ca":false},{"name":"Heather Arendt","is_ca":false},{"name":"Helen J. Kim","is_ca":false},{"name":"Jeong Hyun Lee","is_ca":false},{"name":"Pavel Pugach","is_ca":false},{"name":"Melissa Williams","is_ca":false},{"name":"Gargi Debnath","is_ca":false},{"name":"Brian Moldt","is_ca":false},{"name":"Mariëlle J. van Breemen","is_ca":false},{"name":"Gözde Isik","is_ca":false},{"name":"Max Medina-Ramírez","is_ca":false},{"name":"Jaap Willem Back","is_ca":false},{"name":"Wayne C. Koff","is_ca":false},{"name":"Jean‐Philippe Julien","is_ca":false},{"name":"Eva G. Rakasz","is_ca":false},{"name":"Michael S. Seaman","is_ca":false},{"name":"Miklós Guttman","is_ca":false},{"name":"Kelly K. Lee","is_ca":false},{"name":"Per Johan Klasse","is_ca":false},{"name":"Celia C. LaBranche","is_ca":false},{"name":"William R. Schief","is_ca":false},{"name":"Ian A. Wilson","is_ca":false},{"name":"Julie Overbaugh","is_ca":false},{"name":"Dennis R. Burton","is_ca":false},{"name":"Andrew B. Ward","is_ca":false},{"name":"David C. Montefiori","is_ca":false},{"name":"Hansi Dean","is_ca":false},{"name":"John P. Moore","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05496092498174045,"gpt":0.3235306648220663,"spread":0.2685697398403258,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003525426,0.0001998078,0.0001803206,0.0001894389,0.00009542874,0.0003839601,0.0001540503,0.0003570498,0.002824987],"category_scores_gemma":[0.0003235605,0.0001640374,0.0002266718,0.00005531369,0.0002214738,0.0003151198,0.0001741477,0.001104169,0.0006445288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003984894,"about_ca_system_score_gemma":0.0001286679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001540868,"about_ca_topic_score_gemma":0.0002630815,"domain_scores_codex":[0.999854,0.00003994362,0.000007611954,0.00001918718,0.00004901903,0.00003022349],"domain_scores_gemma":[0.9999198,0.00002249112,0.0000131152,0.00001207341,0.00001812522,0.00001442254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009477685,0.0003831674,0.001788732,0.0002884552,0.00008484038,0.0003792518,0.00006752025,0.0003229208,0.9072909,0.004550905,0.008671245,0.07522442],"study_design_scores_gemma":[0.0004883105,0.003058895,0.02889052,0.0001708615,0.0002106475,0.004641939,0.0001622968,0.002469721,0.8324683,0.008055945,0.1193584,0.00002404675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.859304,0.06217349,0.01098436,0.01259658,0.003547368,0.0001685228,0.0004615484,0.0006759019,0.05008817],"genre_scores_gemma":[0.9693396,0.01046162,0.002428506,0.005044879,0.0006006621,0.00004257374,0.0002423481,0.00005065477,0.01178922],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002824987,"threshold_uncertainty_score":0.009450555,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2098194107","doi":"10.1371/journal.ppat.1005142","title":"The Depsipeptide Romidepsin Reverses HIV-1 Latency In Vivo","year":2015,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":523,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université du Québec à Montréal; Centre Hospitalier de l’Université de Montréal","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Norges Forskningsråd; Celgene","keywords":"Romidepsin; Depsipeptide; In vivo; Human immunodeficiency virus (HIV); Chemistry; Biology; Virology; Genetics; Histone deacetylase; Stereochemistry","authors":[{"name":"Ole S. Søgaard","is_ca":false},{"name":"Mette E. Graversen","is_ca":false},{"name":"Steffen Leth","is_ca":false},{"name":"Rikke Olesen","is_ca":false},{"name":"Christel R. Brinkmann","is_ca":false},{"name":"Sara Konstantin Nissen","is_ca":false},{"name":"Mariane Høgsbjerg Schleimann","is_ca":false},{"name":"Paul W. Denton","is_ca":false},{"name":"William J. Hey-Cunningham","is_ca":false},{"name":"Kersten K. Koelsch","is_ca":false},{"name":"Giuseppe Pantaleo","is_ca":false},{"name":"Kim Krogsgaard","is_ca":false},{"name":"Maja A. Sommerfelt","is_ca":false},{"name":"Rémi Fromentin","is_ca":true},{"name":"Nicolas Chomont","is_ca":true},{"name":"Thomas A. Rasmussen","is_ca":false},{"name":"Lars Østergaard","is_ca":false},{"name":"Martin Tolstrup","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03781327464066974,"gpt":0.2578369715086236,"spread":0.2200236968679539,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002125902,0.0003226517,0.0002671986,0.00005872803,0.00005990746,0.0002514971,0.0001580558,0.0001828937,0.001704518],"category_scores_gemma":[0.0001692787,0.00006479826,0.0001108847,0.000057682,0.0001774909,0.0001398059,0.00008746121,0.0006856511,0.0005273611],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001311458,"about_ca_system_score_gemma":0.000148067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001356759,"about_ca_topic_score_gemma":0.0002435735,"domain_scores_codex":[0.9999032,0.00003234072,0.000006993357,0.00001615932,0.00001768423,0.00002356891],"domain_scores_gemma":[0.9998889,0.00003853499,0.00003344959,0.00001189164,0.000008058422,0.0000191234],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002794689,0.0003974557,0.0006033516,0.0001684328,0.0000231521,0.00008015773,0.00002114639,0.0002885088,0.9714121,0.00006725374,0.000360383,0.02378343],"study_design_scores_gemma":[0.001863726,0.03402394,0.009849199,0.00002706937,0.00008615336,0.001350518,0.00004066795,0.001726616,0.9433895,0.00007851837,0.007553768,0.00001031333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907706,0.004456333,0.00180433,0.0002238714,0.00008071577,0.00008821638,0.0002840639,0.0001103522,0.00218162],"genre_scores_gemma":[0.9956765,0.001252863,0.001372108,0.0001067734,0.00006603348,0.00003685573,0.0003519828,0.00001368659,0.001123187],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001704518,"threshold_uncertainty_score":0.005702138,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2302583067","doi":"10.1126/science.aad9195","title":"HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen","year":2016,"lang":"en","type":"article","venue":"Science","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":483,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"SLAC National Accelerator Laboratory; Biological and Environmental Research; National Institute of Allergy and Infectious Diseases; National Center for Research Resources; National Institute of General Medical Sciences; International AIDS Vaccine Initiative; National Institutes of Health; Office of Science; Howard Hughes Medical Institute; Helen Hay Whitney Foundation; U.S. Department of Energy","keywords":"Immunogen; Germline; Virology; HIV vaccine; Antibody; Biology; Human immunodeficiency virus (HIV); Immunology; Monoclonal antibody; Genetics; Gene","authors":[{"name":"Joseph G. Jardine","is_ca":false},{"name":"Daniel W. Kulp","is_ca":false},{"name":"Colin Havenar‐Daughton","is_ca":false},{"name":"Anita Sarkar","is_ca":false},{"name":"Bryan Briney","is_ca":false},{"name":"Devin Sok","is_ca":false},{"name":"Fabian Sesterhenn","is_ca":false},{"name":"June Ereño‐Orbea","is_ca":true},{"name":"Oleksandr Kalyuzhniy","is_ca":false},{"name":"Isaiah Deresa","is_ca":false},{"name":"Xiaozhen Hu","is_ca":false},{"name":"Skye Spencer","is_ca":false},{"name":"Meaghan Jones","is_ca":false},{"name":"Erik Georgeson","is_ca":false},{"name":"Yumiko Adachi","is_ca":false},{"name":"Michael Kubitz","is_ca":false},{"name":"Allan C. deCamp","is_ca":false},{"name":"Jean‐Philippe Julien","is_ca":true},{"name":"Ian A. Wilson","is_ca":false},{"name":"Dennis R. Burton","is_ca":false},{"name":"Shane Crotty","is_ca":false},{"name":"William R. Schief","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009817944776738183,"gpt":0.2825021617069066,"spread":0.2726842169301684,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001698356,0.0002450693,0.0001056302,0.0001932373,0.00007730819,0.0002059546,0.0001657902,0.0002246067,0.001198884],"category_scores_gemma":[0.0001585778,0.0001669647,0.0000952086,0.00008287927,0.0001620617,0.0001355071,0.0002314027,0.0004887899,0.0003043651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001465774,"about_ca_system_score_gemma":0.0001061702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001695337,"about_ca_topic_score_gemma":0.0003236141,"domain_scores_codex":[0.9998991,0.00002346482,0.000004843389,0.00002587336,0.00002129255,0.00002523275],"domain_scores_gemma":[0.9999193,0.00002506458,0.00002000117,0.00001322288,0.000009671803,0.00001268744],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003427361,0.00001480497,0.0003131868,0.000009361121,0.000001687803,0.00001958448,0.000008262429,0.0001200819,0.9976222,0.0001385349,0.00002756319,0.001690479],"study_design_scores_gemma":[0.00001366321,0.0002703025,0.003199364,0.000005533952,0.000008333521,0.0004195876,0.00001793541,0.002316051,0.9920385,0.0001742021,0.001533315,0.000003183781],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900811,0.0003454882,0.007420655,0.00005606717,0.000008631896,0.00003312831,0.0001169724,0.00008731319,0.001850532],"genre_scores_gemma":[0.9874493,0.0002804142,0.01058406,0.00009683279,0.000004676019,0.00002929731,0.0002065099,0.00002513989,0.001323755],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001198884,"threshold_uncertainty_score":0.004010677,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2200798239","doi":"10.1126/scitranslmed.aad5752","title":"Virologic effects of broadly neutralizing antibody VRC01 administration during chronic HIV-1 infection","year":2015,"lang":"en","type":"article","venue":"Science Translational Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":479,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Institutes of Health; Vaccine Research Center; Delaney AIDS Research Enterprise","keywords":"Medicine; Antibody; Virology; Human immunodeficiency virus (HIV); Neutralizing antibody; Immunology","authors":[{"name":"Rebecca M. Lynch","is_ca":false},{"name":"Eli Boritz","is_ca":false},{"name":"Emily E. Coates","is_ca":false},{"name":"Adam DeZure","is_ca":false},{"name":"Patrick Madden","is_ca":false},{"name":"Pamela Costner","is_ca":false},{"name":"Mary E. Enama","is_ca":false},{"name":"Sarah H. Plummer","is_ca":false},{"name":"LaSonji A. Holman","is_ca":false},{"name":"Cynthia S. Hendel","is_ca":false},{"name":"Ingelise J. Gordon","is_ca":false},{"name":"Joseph P. Casazza","is_ca":false},{"name":"Michelle Conan-Cibotti","is_ca":false},{"name":"Stephen A. Migueles","is_ca":false},{"name":"Randall Tressler","is_ca":false},{"name":"Robert T. Bailer","is_ca":false},{"name":"Adrian B. McDermott","is_ca":false},{"name":"Sandeep Narpala","is_ca":false},{"name":"Sijy O’Dell","is_ca":false},{"name":"Gideon Wolf","is_ca":false},{"name":"Jeffrey D. Lifson","is_ca":false},{"name":"Brandie A. Freemire","is_ca":false},{"name":"Robert J. Gorelick","is_ca":false},{"name":"Janardan P. Pandey","is_ca":false},{"name":"Sarumathi Mohan","is_ca":false},{"name":"Nicolas Chomont","is_ca":true},{"name":"Rémi Fromentin","is_ca":true},{"name":"Tae‐Wook Chun","is_ca":false},{"name":"Anthony S. Fauci","is_ca":false},{"name":"Richard Schwartz","is_ca":false},{"name":"Richard A. Koup","is_ca":false},{"name":"Daniel C. Douek","is_ca":false},{"name":"Zonghui Hu","is_ca":false},{"name":"Edmund V. Capparelli","is_ca":false},{"name":"Barney S. Graham","is_ca":false},{"name":"John R. Mascola","is_ca":false},{"name":"Julie E. Ledgerwood","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02397835775937865,"gpt":0.3331739118519654,"spread":0.3091955540925867,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003206172,0.0002433185,0.0004086029,0.0001291884,0.0001575572,0.0003166083,0.0001912952,0.0002889316,0.0005792836],"category_scores_gemma":[0.0005792321,0.0001399699,0.0001181828,0.00008834461,0.0002247778,0.0001123424,0.0001133703,0.0005282628,0.0001408895],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002441881,"about_ca_system_score_gemma":0.0002747898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001164967,"about_ca_topic_score_gemma":0.001259715,"domain_scores_codex":[0.9997943,0.0000549715,0.00001196117,0.00002594336,0.00003575444,0.00007707971],"domain_scores_gemma":[0.99965,0.0001354753,0.00005789277,0.00003217026,0.00003872618,0.00008576133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.007493544,0.002290672,0.00676821,0.0001061284,0.0000509557,0.0001715746,0.0001877437,0.0005406503,0.9494485,0.00006678732,0.0002855044,0.03258978],"study_design_scores_gemma":[0.002477949,0.2047751,0.2030323,0.00008141912,0.0003902431,0.00148046,0.0002375116,0.006543801,0.5757788,0.0001444565,0.005006099,0.00005166812],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992084,0.0004022086,0.00009112639,0.00001327432,0.000007276624,0.00001267691,0.0000293467,0.00001108092,0.0002246802],"genre_scores_gemma":[0.9991964,0.0001423259,0.0001618941,0.00003992619,0.0000153151,0.00001606954,0.00009825274,0.00000492103,0.0003248824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001164967,"threshold_uncertainty_score":0.002316356,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055243308","doi":"10.1038/nm.2106","title":"Programmed death-1–induced interleukin-10 production by monocytes impairs CD4+ T cell activation during HIV infection","year":2010,"lang":"en","type":"article","venue":"Nature Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":475,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Royal Victoria Hospital; McGill University Health Centre; Royal Victoria Regional Health Centre; Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Downregulation and upregulation; T cell; Programmed cell death; Immunology; Viral replication; Interleukin; Interleukin 10; Biology; Receptor; Interleukin 2; Monocyte; Cell; Apoptosis; Immune system; Cytokine; Virus; Biochemistry; Gene","authors":[{"name":"Elias A. Said","is_ca":true},{"name":"Franck P. Dupuy","is_ca":true},{"name":"Lydie Trautmann","is_ca":true},{"name":"Yuwei Zhang","is_ca":true},{"name":"Yu Shi","is_ca":true},{"name":"Mohamed El‐Far","is_ca":true},{"name":"Brenna J. Hill","is_ca":false},{"name":"Alessandra Noto","is_ca":true},{"name":"Petronela Ancuța","is_ca":true},{"name":"Yoav Peretz","is_ca":true},{"name":"Simone Gonçalves Fonseca","is_ca":true},{"name":"Julien van Grevenynghe","is_ca":true},{"name":"Mohamed Rachid Boulassel","is_ca":true},{"name":"Julie Bruneau","is_ca":true},{"name":"Naglaa H. Shoukry","is_ca":true},{"name":"Jean‐Pierre Routy","is_ca":true},{"name":"Daniel C. Douek","is_ca":false},{"name":"Elias K. Haddad","is_ca":true},{"name":"Rafick‐Pierre Sékaly","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008318004773693773,"gpt":0.2740096270685496,"spread":0.2656916222948558,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000412302,0.0004778789,0.0004773549,0.0002470688,0.0002302074,0.0006301401,0.0002779491,0.0005131256,0.00110714],"category_scores_gemma":[0.0004781753,0.0003042603,0.0002208798,0.0001514313,0.0003967845,0.0002978224,0.0002624492,0.001345962,0.0003104968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003674219,"about_ca_system_score_gemma":0.0003581557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003882918,"about_ca_topic_score_gemma":0.0007191484,"domain_scores_codex":[0.9995048,0.0001542003,0.00003734876,0.00002964448,0.00006909646,0.0002049931],"domain_scores_gemma":[0.999701,0.0001088979,0.00005188012,0.00003372815,0.00002267852,0.00008195333],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003368217,0.0003152163,0.001127335,0.0000845545,0.00001013069,0.0002692578,0.0000776154,0.0002647569,0.9907047,0.0001367385,0.0001351279,0.003506211],"study_design_scores_gemma":[0.0004780489,0.005016606,0.03669549,0.00004037662,0.00007789057,0.001172235,0.0003749611,0.003268575,0.9510528,0.0003492245,0.001447157,0.00002665893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983289,0.0006907542,0.0003045347,0.00006169499,0.00003567545,0.00001606402,0.00006926256,0.00001980156,0.0004733496],"genre_scores_gemma":[0.9980645,0.0003638021,0.0004612485,0.00006743496,0.00003642996,0.00004026587,0.0001361916,0.000006268363,0.0008239015],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00110714,"threshold_uncertainty_score":0.003703713,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069926681","doi":"10.1038/nature07746","title":"Adaptation of HIV-1 to human leukocyte antigen class I","year":2009,"lang":"en","type":"article","venue":"Nature","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":470,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"AIDS Vancouver","funders":"National Institute of Allergy and Infectious Diseases; National Institute for Health and Care Research; Wellcome Trust","keywords":"Epitope; Human leukocyte antigen; Biology; Virology; Immunology; HLA-B; CD8; HLA-B Antigens; Antigen; Population; Immune system; Medicine","authors":[{"name":"Yuka Kawashima","is_ca":false},{"name":"Katja Pfafferott","is_ca":false},{"name":"John Frater","is_ca":false},{"name":"Philippa C. Matthews","is_ca":false},{"name":"Rebecca Payne","is_ca":false},{"name":"Marylyn M. Addo","is_ca":false},{"name":"Hiroyuki Gatanaga","is_ca":false},{"name":"Mamoru Fujiwara","is_ca":false},{"name":"Atsuko Hachiya","is_ca":false},{"name":"Hirokazu Koizumi","is_ca":false},{"name":"Nozomi Kuse","is_ca":false},{"name":"Shinichi Oka","is_ca":false},{"name":"Anna Duda","is_ca":false},{"name":"Andrew J. Prendergast","is_ca":false},{"name":"Hayley Crawford","is_ca":false},{"name":"Alasdair Leslie","is_ca":false},{"name":"Zabrina L. Brumme","is_ca":false},{"name":"Chanson J. Brumme","is_ca":false},{"name":"Todd M. Allen","is_ca":false},{"name":"Christian Brander","is_ca":false},{"name":"Richard A. Kaslow","is_ca":false},{"name":"James Tang","is_ca":false},{"name":"Eric Hunter","is_ca":false},{"name":"Susan Allen","is_ca":false},{"name":"Joseph Mulenga","is_ca":false},{"name":"Songee Branch","is_ca":false},{"name":"Tim Roach","is_ca":false},{"name":"Mina John","is_ca":false},{"name":"S. Mallal","is_ca":false},{"name":"Anthony Ogwu","is_ca":false},{"name":"Roger Shapiro","is_ca":false},{"name":"Júlia G. Prado","is_ca":false},{"name":"Sarah Fidler","is_ca":false},{"name":"Jonathan Weber","is_ca":false},{"name":"Oliver G. Pybus","is_ca":false},{"name":"Paul Klenerman","is_ca":false},{"name":"Thumbi Ndung’u","is_ca":false},{"name":"Rodney Phillips","is_ca":false},{"name":"David Heckerman","is_ca":true},{"name":"P. Richard Harrigan","is_ca":false},{"name":"Bruce D. Walker","is_ca":false},{"name":"Masafumi Takiguchi","is_ca":false},{"name":"Philip Goulder","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01480933191899143,"gpt":0.2954763320716362,"spread":0.2806670001526448,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000242645,0.000280892,0.0001579853,0.0001879543,0.0003044504,0.0007319336,0.0003569009,0.0002868891,0.004172849],"category_scores_gemma":[0.0005464936,0.0001414298,0.0003012877,0.0001348856,0.0002693032,0.0002718164,0.0005099893,0.0008631311,0.0008141754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005203573,"about_ca_system_score_gemma":0.0002418493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001003818,"about_ca_topic_score_gemma":0.0006531109,"domain_scores_codex":[0.9996949,0.00007974048,0.000007920829,0.00004207489,0.00004507782,0.0001303676],"domain_scores_gemma":[0.9998719,0.00002233706,0.00002221353,0.00003489764,0.00002341085,0.00002537632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004490322,0.0002254852,0.01178073,0.00006802369,0.00004500111,0.0005188869,0.0002547763,0.000825136,0.951536,0.002397959,0.001109648,0.03078922],"study_design_scores_gemma":[0.0001050599,0.003152174,0.2123193,0.00009727122,0.0001399426,0.006240094,0.002023298,0.006073567,0.7082156,0.004813886,0.05675562,0.000064174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882447,0.001911208,0.001105639,0.0003284674,0.000179655,0.0000333729,0.0001066578,0.00003913914,0.008051242],"genre_scores_gemma":[0.9954447,0.0007075834,0.0003826679,0.0002572038,0.00004168287,0.00001547681,0.0001342794,0.00001679518,0.002999815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004172849,"threshold_uncertainty_score":0.01395959,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2558446330","doi":"10.1056/nejmoa1602046","title":"Safety and Efficacy of a Dapivirine Vaginal Ring for HIV Prevention in Women","year":2016,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":467,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Child, Adolescent and Family Mental Health","funders":"","keywords":"Medicine; Seroconversion; Hazard ratio; Placebo; Confidence interval; Vaginal ring; Incidence (geometry); Gynecology; Obstetrics; Internal medicine; Human immunodeficiency virus (HIV); Population; Family planning; Immunology","authors":[{"name":"Annaléne Nel","is_ca":false},{"name":"Neliëtte van Niekerk","is_ca":false},{"name":"Saidi Kapiga","is_ca":false},{"name":"Linda‐Gail Bekker","is_ca":false},{"name":"Cynthia Gama","is_ca":true},{"name":"Katherine Gill","is_ca":false},{"name":"Anatoli Kamali","is_ca":false},{"name":"Philip Kotze","is_ca":false},{"name":"Cheryl Louw","is_ca":false},{"name":"Zonke Mabude","is_ca":true},{"name":"Nokuthula Miti","is_ca":false},{"name":"Sylvia Kusemererwa","is_ca":false},{"name":"Hugo Tempelman","is_ca":false},{"name":"Hannelie Carstens","is_ca":false},{"name":"Bríd Devlin","is_ca":false},{"name":"Michelle Isaacs","is_ca":false},{"name":"Mariëtte Malherbe","is_ca":false},{"name":"Winél Mans","is_ca":false},{"name":"Jeremy Nuttall","is_ca":false},{"name":"Marisa Russell","is_ca":false},{"name":"Smangaliso Ntshele","is_ca":false},{"name":"Marlie Smit","is_ca":false},{"name":"Leonard Nichiren Solai","is_ca":false},{"name":"Patrick Spence","is_ca":false},{"name":"John Steytler","is_ca":false},{"name":"Kathleen Marie Windle","is_ca":false},{"name":"Maarten Borremans","is_ca":false},{"name":"Sophie Resseler","is_ca":false},{"name":"Jens Van Roey","is_ca":false},{"name":"Wim Parys","is_ca":false},{"name":"Tony Vangeneugden","is_ca":false},{"name":"Ben Van Baelen","is_ca":false},{"name":"Zeda Rosenberg","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01493266456518039,"gpt":0.2919465706511111,"spread":0.2770139060859307,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002193852,0.0003200541,0.0007443959,0.0002936896,0.0002462549,0.0004224322,0.0003711664,0.0008758954,0.001904421],"category_scores_gemma":[0.004356068,0.0002549289,0.0005521876,0.000174878,0.0005531452,0.0004083962,0.0002490225,0.0007247505,0.0001487718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002259515,"about_ca_system_score_gemma":0.000353684,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002349467,"about_ca_topic_score_gemma":0.0004397866,"domain_scores_codex":[0.9991161,0.0006240117,0.00005315878,0.00007073909,0.00009022102,0.00004581704],"domain_scores_gemma":[0.9977211,0.001189133,0.0007222733,0.00006877157,0.00007490379,0.0002236997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.6152849,0.007043002,0.02951647,0.004282788,0.001477867,0.0003296326,0.0007649627,0.0007098995,0.01340286,0.0002874982,0.0007955791,0.3261045],"study_design_scores_gemma":[0.2762622,0.6407622,0.06819883,0.001099405,0.00132029,0.0008660337,0.000342459,0.0008429331,0.004583269,0.0004484732,0.005223988,0.00005009385],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9795493,0.01880405,0.0002035207,0.0002646213,0.00006767096,0.0002673224,0.00008860831,0.00001277085,0.0007420215],"genre_scores_gemma":[0.9960033,0.003092493,0.0003325975,0.000133022,0.00007498077,0.0001671412,0.00003810451,0.000001754304,0.0001564988],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002193852,"threshold_uncertainty_score":0.01160234,"prediction_status":"machine_predicted_unvalidated"},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"randomized_trial","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"design_other","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"}],"label_agreement":"split"},{"id":"W2068993874","doi":"10.1084/jem.20031598","title":"HIV-1 Viremia Prevents the Establishment of Interleukin 2–producing HIV-specific Memory CD4+ T Cells Endowed with Proliferative Capacity","year":2003,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":464,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre; Université de Montréal","funders":"Canadian Institutes of Health Research; National Institutes of Health; Genome Canada","keywords":"Viremia; Immunology; Biology; T cell; Virology; Interferon gamma; Cytokine; Immune system; Antibody","authors":[{"name":"Souheil-Antoine Younes","is_ca":true},{"name":"Bader Yassine‐Diab","is_ca":true},{"name":"Alain R. Dumont","is_ca":true},{"name":"Mohamed‐Rachid Boulassel","is_ca":true},{"name":"Zvi Grossman","is_ca":false},{"name":"Jean‐Pierre Routy","is_ca":true},{"name":"Rafick‐Pierre Sékaly","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02242968908844442,"gpt":0.265319072462909,"spread":0.2428893833744646,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001880985,0.0002180973,0.0002347029,0.0001311395,0.0001436223,0.0002771431,0.0001422691,0.0002136342,0.0006370601],"category_scores_gemma":[0.0005510109,0.0001337958,0.00009318235,0.00006019752,0.0001791586,0.0001215561,0.0001438002,0.0003526014,0.0001342412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001217473,"about_ca_system_score_gemma":0.0001023693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002650121,"about_ca_topic_score_gemma":0.0002910277,"domain_scores_codex":[0.9998672,0.00003145066,0.00001117493,0.00002152747,0.00001422442,0.00005443695],"domain_scores_gemma":[0.9997448,0.00008003908,0.00005878519,0.00002994007,0.00001894379,0.00006742352],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002724238,0.0004531681,0.08476599,0.0001388899,0.00005065943,0.001092055,0.0004972889,0.0004825645,0.8561432,0.0002883333,0.000342689,0.05302109],"study_design_scores_gemma":[0.0005544024,0.01937148,0.6094075,0.0001001215,0.0002493107,0.01817347,0.0004555686,0.005561332,0.3367419,0.0005439956,0.008805962,0.00003480614],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999226,0.0003796563,0.0001044138,0.00001329601,0.000003055182,0.000004635772,0.00001133738,0.00001145601,0.0002461174],"genre_scores_gemma":[0.9996772,0.00005247139,0.00008009651,0.00001842601,0.00000657113,0.000002718526,0.00004147189,0.000001761823,0.0001193093],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006370601,"threshold_uncertainty_score":0.002131164,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2462078368","doi":"10.1371/journal.ppat.1005761","title":"CD4+ T Cells Expressing PD-1, TIGIT and LAG-3 Contribute to HIV Persistence during ART","year":2016,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":424,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"National Center for Complementary and Integrative Health; Center for AIDS Research, University of Washington; University of California, San Francisco; National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; Delaney AIDS Research Enterprise; National Institutes of Health; Medical Research Council; amfAR, The Foundation for AIDS Research","keywords":"TIGIT; Biology; Immune system; Peripheral blood mononuclear cell; Immune checkpoint; Immunology; Jurkat cells; T cell; Virology; Molecular biology; Cell biology; Immunotherapy; Genetics; In vitro","authors":[{"name":"Rémi Fromentin","is_ca":true},{"name":"Wendy Bakeman","is_ca":false},{"name":"Mariam B. Lawani","is_ca":false},{"name":"Gabriela Khoury","is_ca":false},{"name":"Wendy Hartogensis","is_ca":false},{"name":"Sandrina DaFonseca","is_ca":false},{"name":"Marisela Killian","is_ca":false},{"name":"Lorrie Epling","is_ca":false},{"name":"Rebecca Hoh","is_ca":false},{"name":"Elizabeth Sinclair","is_ca":false},{"name":"Frederick Hecht","is_ca":false},{"name":"Peter Bacchetti","is_ca":false},{"name":"Steven G. Deeks","is_ca":false},{"name":"Sharon R. Lewin","is_ca":false},{"name":"Rafick‐Pierre Sékaly","is_ca":false},{"name":"Nicolas Chomont","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01942403071187484,"gpt":0.2241288317811572,"spread":0.2047048010692824,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003187909,0.0002239611,0.0003309229,0.0003514673,0.0001734203,0.0006048497,0.000205354,0.0002411316,0.001153197],"category_scores_gemma":[0.001079253,0.0001954235,0.000211042,0.0002036762,0.0002027547,0.0002068123,0.0002715002,0.0004801979,0.0001935775],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000252932,"about_ca_system_score_gemma":0.0002855264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001065015,"about_ca_topic_score_gemma":0.0008717676,"domain_scores_codex":[0.9997944,0.00004469284,0.00001097397,0.00003660743,0.00005493315,0.00005835743],"domain_scores_gemma":[0.9995734,0.0001657873,0.0001371108,0.00002921969,0.00003999702,0.00005441254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003011582,0.0002915613,0.5452273,0.0002337103,0.000234901,0.0003845422,0.0004161492,0.004651892,0.3434125,0.0005841304,0.0004355116,0.1011161],"study_design_scores_gemma":[0.00006330136,0.001048765,0.9320098,0.00004974549,0.0003244674,0.001686132,0.0002960765,0.01996057,0.04093597,0.001374814,0.002220085,0.000030295],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961798,0.001540243,0.001477322,0.00004480859,0.000004809551,0.00001291968,0.0001038464,0.00003834071,0.0005977981],"genre_scores_gemma":[0.9987826,0.0002756102,0.0004181876,0.00002365027,0.00001133968,0.00001084318,0.00009248422,0.000003842327,0.0003814903],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001153197,"threshold_uncertainty_score":0.003857851,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2122781654","doi":"10.1038/emboj.2008.192","title":"G9a/GLP complexes independently mediate H3K9 and DNA methylation to silence transcription","year":2008,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":422,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"RIKEN; University of British Columbia","keywords":"Biology; DNA methylation; Genetics; Transcription (linguistics); Methylation; DNA; Gene; Gene expression","authors":[{"name":"Makoto Tachibana","is_ca":false},{"name":"Yasuko Matsumura","is_ca":false},{"name":"Mikiko Fukuda","is_ca":false},{"name":"Hiroshi Kimura","is_ca":false},{"name":"Yoichi Shinkai","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03415816266856176,"gpt":0.2754443303754575,"spread":0.2412861677068958,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003328863,0.0004325428,0.000352271,0.0003581864,0.0005188413,0.0009747396,0.0006787171,0.0005971945,0.006262073],"category_scores_gemma":[0.0004306392,0.0002858418,0.000496429,0.0001373848,0.0006275331,0.000532817,0.001727096,0.001684194,0.002833091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006240984,"about_ca_system_score_gemma":0.000404869,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008327898,"about_ca_topic_score_gemma":0.001390918,"domain_scores_codex":[0.9997262,0.00003999318,0.00001029245,0.00008083923,0.00004708036,0.00009564814],"domain_scores_gemma":[0.9997017,0.00004267773,0.00004213171,0.00005332977,0.00003778298,0.0001223755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005290985,0.00003837337,0.0006882953,0.00004529754,0.00003362746,0.0001002987,0.00002051003,0.0001344679,0.9909616,0.001027916,0.000698105,0.005722286],"study_design_scores_gemma":[0.0001305508,0.0002154163,0.007489579,0.00001398303,0.00002187968,0.0001857996,0.0001101694,0.001286679,0.9804878,0.0009643518,0.00908039,0.00001338132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9527181,0.004794765,0.01738553,0.001945055,0.0007779934,0.0001685831,0.001700133,0.0009997552,0.01951002],"genre_scores_gemma":[0.9889465,0.0003317549,0.004248139,0.0003406525,0.00005440437,0.0000466408,0.0009213217,0.0001378404,0.004972957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006262073,"threshold_uncertainty_score":0.02094871,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2466398959","doi":"10.1038/nm.4108","title":"International AIDS Society global scientific strategy: towards an HIV cure 2016","year":2016,"lang":"en","type":"article","venue":"Nature Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":422,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Montreal Clinical Research Institute; Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Mental Health; Medical Research Council; National Cancer Institute; U.S. Department of Health and Human Services; National Institutes of Health; World Health Organization; National Heart, Lung, and Blood Institute; U.S. Department of Defense","keywords":"Human immunodeficiency virus (HIV); Medicine; Virology; Political science; Family medicine; Intensive care medicine","authors":[{"name":"Steven G. Deeks","is_ca":false},{"name":"Sharon R. Lewin","is_ca":false},{"name":"Anna Laura Ross","is_ca":false},{"name":"Jintanat Ananworanich","is_ca":false},{"name":"Monsef Benkirane","is_ca":false},{"name":"Paula M. Cannon","is_ca":true},{"name":"Nicolas Chomont","is_ca":true},{"name":"Daniel C. Douek","is_ca":false},{"name":"Jeffrey D. Lifson","is_ca":false},{"name":"Ying-Ru Lo","is_ca":false},{"name":"Daniel R. Kuritzkes","is_ca":false},{"name":"David M. Margolis","is_ca":false},{"name":"John W. Mellors","is_ca":false},{"name":"Deborah Persaud","is_ca":false},{"name":"Joseph D. Tucker","is_ca":false},{"name":"Françoise Barré‐Sinoussi","is_ca":false},{"name":"Galit Alter","is_ca":false},{"name":"Judith D. Auerbach","is_ca":false},{"name":"Brigitte Autran","is_ca":false},{"name":"Dan H. Barouch","is_ca":false},{"name":"Georg Behrens","is_ca":false},{"name":"Marina Cavazzana","is_ca":false},{"name":"Zhiwei Chen","is_ca":true},{"name":"Éric A Cohen","is_ca":true},{"name":"Giulio Maria Corbelli","is_ca":false},{"name":"Serge Eholié","is_ca":false},{"name":"Nir Eyal","is_ca":false},{"name":"Sarah Fidler","is_ca":false},{"name":"Laurindo Garcia","is_ca":false},{"name":"Cynthia Grossman","is_ca":false},{"name":"Gail E. Henderson","is_ca":false},{"name":"Timothy J. Henrich","is_ca":false},{"name":"Richard Jefferys","is_ca":false},{"name":"Hans-Peter Kiem","is_ca":false},{"name":"Joseph McCune","is_ca":false},{"name":"Keymanthri Moodley","is_ca":true},{"name":"Peter A. Newman","is_ca":true},{"name":"Monique Nijhuis","is_ca":false},{"name":"Moses Supercharger Nsubuga","is_ca":false},{"name":"Melanie Ott","is_ca":false},{"name":"Sarah Palmer","is_ca":false},{"name":"Douglas D. Richman","is_ca":false},{"name":"Asier Sáez‐Cirión","is_ca":false},{"name":"Matthew Sharp","is_ca":false},{"name":"Janet D. Siliciano","is_ca":false},{"name":"Guido Silvestri","is_ca":false},{"name":"Jerome Amir Singh","is_ca":false},{"name":"Bruno Spire","is_ca":false},{"name":"Jeffrey Taylor","is_ca":false},{"name":"Martin Tolstrup","is_ca":false},{"name":"Susana Valente","is_ca":false},{"name":"Jan van Lunzen","is_ca":false},{"name":"Rochelle P. Walensky","is_ca":false},{"name":"Ira Wilson","is_ca":false},{"name":"Jerome A. Zack","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01361868617663788,"gpt":0.3241729915814007,"spread":0.3105543054047629,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01116466,0.001612273,0.0009527439,0.003057786,0.001956102,0.007183561,0.001590123,0.01087235,0.02997539],"category_scores_gemma":[0.01232964,0.000498271,0.001084153,0.001868094,0.001955411,0.004391838,0.006559661,0.008509629,0.01755508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003887426,"about_ca_system_score_gemma":0.03145592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004247381,"about_ca_topic_score_gemma":0.005910559,"domain_scores_codex":[0.9963295,0.0006998954,0.0002728184,0.0001415211,0.001738238,0.000818071],"domain_scores_gemma":[0.9882278,0.000893794,0.0009631041,0.0003324889,0.00339811,0.006184787],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001462552,0.0001425456,0.0006796885,0.0004951124,0.00002733477,0.0001003279,0.00009957599,0.0001519055,0.0006260246,0.01075307,0.9064693,0.08030897],"study_design_scores_gemma":[0.00003105096,0.0000538356,0.001365928,0.0004309564,0.00001998004,0.0001051865,0.0001466161,0.00009021323,0.0004413562,0.003709711,0.9935901,0.00001503078],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"review","genre_scores_codex":[0.002430982,0.08513421,0.00151369,0.6035967,0.2142595,0.0002208365,0.001815398,0.0004612481,0.09056748],"genre_scores_gemma":[0.04448579,0.1128227,0.010504,0.3330646,0.08440517,0.0004617356,0.004909852,0.0005031692,0.4088431],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.02997539,"threshold_uncertainty_score":0.1002777,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2019039109","doi":"10.1038/nature09337","title":"A cryptic sensor for HIV-1 activates antiviral innate immunity in dendritic cells","year":2010,"lang":"en","type":"article","venue":"Nature","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":420,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institutes of Health; Cancer Research Institute; York University; National Institute of Allergy and Infectious Diseases; Johns Hopkins University; Howard Hughes Medical Institute","keywords":"Innate immune system; Dendritic cell; Biology; Cyclophilin A; Cypa; Cell biology; Immune system; Acquired immune system; Interferon; Virology; Infectivity; Capsid; Immunology; Virus; Molecular biology","authors":[{"name":"Nicolas Manel","is_ca":false},{"name":"Brandon Hogstad","is_ca":false},{"name":"Yaming Wang","is_ca":false},{"name":"David E. Levy","is_ca":false},{"name":"Derya Unutmaz","is_ca":false},{"name":"Dan R. Littman","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007774086880029227,"gpt":0.2721489239425894,"spread":0.2643748370625602,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002968085,0.0003015608,0.0003142264,0.0002088046,0.0004148301,0.001156569,0.000415219,0.0008313484,0.003485163],"category_scores_gemma":[0.0002693576,0.0002038131,0.0003342257,0.0001488057,0.0003458833,0.0009238071,0.0009052257,0.001514535,0.001173639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008617308,"about_ca_system_score_gemma":0.0003936739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001011735,"about_ca_topic_score_gemma":0.0001680596,"domain_scores_codex":[0.9997361,0.00002693186,0.000009677005,0.00006231143,0.00006556585,0.00009941341],"domain_scores_gemma":[0.9998579,0.00001642748,0.00002551591,0.00002374626,0.00002072942,0.00005560935],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000308277,0.00002616601,0.0003184683,0.00004970634,0.000007733987,0.0001428445,0.00002663234,0.0001250306,0.9936422,0.00205444,0.00039763,0.002900867],"study_design_scores_gemma":[0.0001039095,0.00031252,0.003935136,0.00002611393,0.00001758328,0.0009465354,0.0001631786,0.002778444,0.9783096,0.003259956,0.01012813,0.0000188072],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9735227,0.005562456,0.009406647,0.00189251,0.0006070058,0.00007580666,0.0006119956,0.0001918129,0.008129152],"genre_scores_gemma":[0.9929596,0.0009345108,0.002520302,0.000424224,0.00008088222,0.00001808986,0.000310963,0.00002205136,0.002729334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003485163,"threshold_uncertainty_score":0.01165909,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2903314774","doi":"10.1016/s1473-3099(18)30647-9","title":"Global and regional molecular epidemiology of HIV-1, 1990–2015: a systematic review, global survey, and trend analysis","year":2018,"lang":"en","type":"review","venue":"The Lancet Infectious Diseases","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":417,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Medical Research Council; Fundação Oswaldo Cruz; Aristotle University of Thessaloniki; Abbott Laboratories; University of Edinburgh; Kyoto University; University of Ghana; University of North Carolina; World Health Organization; University of Tokyo; Los Alamos National Laboratory; Mahidol University; Noguchi Memorial Institute for Medical Research, University of Ghana; National Cancer Research Institute; Kyushu University; KU Leuven; Instituto Nacional de Ciberseguridad; University of Oxford; Istituto Superiore di Sanità; Seoul National University; City, University of London; Duke University; University of Sydney; University College Dublin; Institut Pasteur; University College London; Academy of Medical Sciences; National Institute for Health and Care Research; Linacre College, University of Oxford; Ministerio de Salud de la Nación; Rockefeller University; Instituto de Salud Carlos III; Wentworth Institute of Technology; Washington University School of Medicine in St. Louis; Public Health Agency of Canada; London School of Hygiene and Tropical Medicine; Ministry of Health; School of Medicine, Vanderbilt University; University of Birmingham; Addis Ababa University; Henry M. Jackson Foundation; University of Hawai'i; University of Cape Town; School of Medicine, Emory University; School of Medicine, New York University; Oxford University Clinical Academic Graduate School; Universidad de Buenos Aires; Health and Environmental Sciences Institute; Karolinska Institutet; University of Maryland; University of Pennsylvania; University of Washington; Harvard School of Public Health","keywords":"Human immunodeficiency virus (HIV); Epidemiology; Molecular epidemiology; Regional science; Data science; Geography; Medicine; Environmental health; Family medicine; Computer science; Biology; Pathology; Genetics","authors":[{"name":"Joris Hemelaar","is_ca":false},{"name":"Ramyiadarsini Elangovan","is_ca":false},{"name":"Jason Yun","is_ca":false},{"name":"Leslie Dickson-Tetteh","is_ca":false},{"name":"Isabella Fleminger","is_ca":false},{"name":"Shona Kirtley","is_ca":false},{"name":"Brian Williams","is_ca":false},{"name":"Eleanor Gouws-Williams","is_ca":false},{"name":"Peter D. Ghys","is_ca":false},{"name":"Alash’le Abimiku","is_ca":false},{"name":"Simon M. Agwale","is_ca":false},{"name":"Chris Archibald","is_ca":false},{"name":"Boaz Avidor","is_ca":false},{"name":"María Gabriela Barbás","is_ca":false},{"name":"Françoise Barré‐Sinoussi","is_ca":false},{"name":"Banson Barugahare","is_ca":false},{"name":"El Hadj Belabbes","is_ca":false},{"name":"Silvia Bertagnolio","is_ca":false},{"name":"Deborah L. Birx","is_ca":false},{"name":"Aleksei F. Bobkov","is_ca":false},{"name":"James Brandful","is_ca":false},{"name":"Helba Bredell","is_ca":false},{"name":"Catherine A. Brennan","is_ca":false},{"name":"James Brooks","is_ca":false},{"name":"M Brûćková","is_ca":false},{"name":"Luigi Buonaguro","is_ca":false},{"name":"Franco M. Buonaguro","is_ca":false},{"name":"Stefano Buttò","is_ca":false},{"name":"Anne Buvé","is_ca":false},{"name":"Mary S. Campbell","is_ca":false},{"name":"Jean K. Carr","is_ca":false},{"name":"Alex Carrera","is_ca":false},{"name":"Manuel Gómez Carrillo","is_ca":false},{"name":"Connie Celum","is_ca":false},{"name":"Beth Chaplin","is_ca":false},{"name":"Macarthur Charles","is_ca":false},{"name":"Dimitrios Chatzidimitriou","is_ca":false},{"name":"Zhiwei Chen","is_ca":false},{"name":"Katsumi Chijiwa","is_ca":false},{"name":"David R. Cooper","is_ca":false},{"name":"Philip Cunningham","is_ca":false},{"name":"Anoumou Dagnra","is_ca":false},{"name":"Cillian De Gascun","is_ca":false},{"name":"Elena Delgado","is_ca":false},{"name":"Ursula Dietrich","is_ca":false},{"name":"Dominic E. Dwyer","is_ca":false},{"name":"Dennis Ellenberger","is_ca":false},{"name":"Barbara Ensoli","is_ca":false},{"name":"Max Essex","is_ca":false},{"name":"Feng Gao","is_ca":false},{"name":"Hervé Fleury","is_ca":false},{"name":"Peter N. Fonjungo","is_ca":false},{"name":"Vincent Foulongne","is_ca":false},{"name":"Deepak A. Gadkari","is_ca":false},{"name":"Féderico García","is_ca":false},{"name":"Roger Garsia","is_ca":false},{"name":"G. M. Gershy-Damet","is_ca":false},{"name":"Judith R Glynn","is_ca":false},{"name":"Ruth Goodall","is_ca":false},{"name":"Zehava Grossman","is_ca":false},{"name":"Monick Lindenmeyer-Guimarães","is_ca":false},{"name":"Beatrice H. Hahn","is_ca":false},{"name":"Raph L Hamers","is_ca":false},{"name":"Osamah Hamouda","is_ca":false},{"name":"Ray Handema","is_ca":false},{"name":"Xiang He","is_ca":false},{"name":"Joshua T. Herbeck","is_ca":false},{"name":"David D. Ho","is_ca":false},{"name":"África Holguín","is_ca":false},{"name":"Mina C. Hosseinipour","is_ca":false},{"name":"Gillian Hunt","is_ca":false},{"name":"Masahiko Ito","is_ca":false},{"name":"Mohamed Ali Bel Hadj Kacem","is_ca":false},{"name":"Erin Kahle","is_ca":false},{"name":"P. Kaleebu","is_ca":false},{"name":"Marcia L. Kalish","is_ca":false},{"name":"Adeeba Kamarulzaman","is_ca":false},{"name":"Chun Kang","is_ca":false},{"name":"Phyllis Kanki","is_ca":false},{"name":"Karamov Ev","is_ca":false},{"name":"Jean‐Claude Karasi","is_ca":false},{"name":"Kayitesi Kayitenkore","is_ca":false},{"name":"Dwip Kitayaporn","is_ca":false},{"name":"Leondios G. Kostrikis","is_ca":false},{"name":"Claudia Kücherer","is_ca":false},{"name":"Thomas Leitner","is_ca":false},{"name":"Kirsi Liitsola","is_ca":false},{"name":"Jai Lingappa","is_ca":false},{"name":"Marek Linka","is_ca":false},{"name":"Ivette Lorenzana","is_ca":false},{"name":"Vladimir V. Lukashov","is_ca":false},{"name":"Shlomo Maayan","is_ca":false},{"name":"Luzia Mayr","is_ca":false},{"name":"Francine McCutchan","is_ca":false},{"name":"Nicolas Méda","is_ca":false},{"name":"Elisabeth Menu","is_ca":false},{"name":"Fred Mhalu","is_ca":false},{"name":"Doreen Mloka","is_ca":false},{"name":"John L. Mokili","is_ca":false},{"name":"Brigitte Montès","is_ca":false},{"name":"Orna Mor","is_ca":false},{"name":"Mariza Gonçalves Morgado","is_ca":false},{"name":"Fausta Mosha","is_ca":false},{"name":"Awatef El Moussi","is_ca":false},{"name":"James I. Mullins","is_ca":false},{"name":"Rafael Nájera","is_ca":false},{"name":"Mejda Nasr","is_ca":false},{"name":"Nicaise Ndembi","is_ca":false},{"name":"Joel R. Neilson","is_ca":false},{"name":"Vivek R. Nerurkar","is_ca":false},{"name":"Florian Neuhann","is_ca":false},{"name":"Claudine Nolte","is_ca":false},{"name":"Vlad Novitsky","is_ca":false},{"name":"Philippe Nyambi","is_ca":false},{"name":"Marianna Ofner","is_ca":false},{"name":"Fem Julia Paladin","is_ca":false},{"name":"Anna Papa","is_ca":false},{"name":"Jean W. Pape","is_ca":false},{"name":"Neil Parkin","is_ca":false},{"name":"Chris M. Parry","is_ca":false},{"name":"Martine Peeters","is_ca":false},{"name":"Alexandra Pelletier","is_ca":false},{"name":"Lucía Pérez-Álvarez","is_ca":false},{"name":"Deenan Pillay","is_ca":false},{"name":"Angie N. Pinto","is_ca":false},{"name":"Trinh Duy Quang","is_ca":false},{"name":"Cecilia Rademeyer","is_ca":false},{"name":"Filimone Raikanikoda","is_ca":false},{"name":"Mark A. Rayfield","is_ca":false},{"name":"Jean‐Marc Reynes","is_ca":false},{"name":"Tobias Rinke de Wit","is_ca":false},{"name":"Kenneth E. Robbins","is_ca":false},{"name":"Morgane Rolland","is_ca":false},{"name":"Christine Rousseau","is_ca":false},{"name":"Jesus Salazar-Gonzales","is_ca":false},{"name":"Hanan Salem","is_ca":false},{"name":"Mika Salminen","is_ca":false},{"name":"Horacio Salomón","is_ca":false},{"name":"Paul Sandstrom","is_ca":false},{"name":"Mario L. Santiago","is_ca":false},{"name":"Abdoulaye Dieng Sarr","is_ca":false},{"name":"Bryan Schroeder","is_ca":false},{"name":"Michel Segondy","is_ca":false},{"name":"Philippe Selhorst","is_ca":false},{"name":"S. D. K. Sempala","is_ca":false},{"name":"Jean Servais","is_ca":false},{"name":"Ansari Shaik","is_ca":false},{"name":"Yiming Shao","is_ca":false},{"name":"Amine Slim","is_ca":false},{"name":"Marcelo A. Soares","is_ca":false},{"name":"Elijah Songok","is_ca":false},{"name":"Debbie Stewart","is_ca":false},{"name":"Julie Stokes","is_ca":false},{"name":"Shambavi Subbarao","is_ca":false},{"name":"Ruengpung Sutthent","is_ca":false},{"name":"Jun Takehisa","is_ca":false},{"name":"Amílcar Tanuri","is_ca":false},{"name":"Kok Keng Tee","is_ca":false},{"name":"Kiran Thapa","is_ca":false},{"name":"Michael M. Thomson","is_ca":false},{"name":"Tyna Tran","is_ca":false},{"name":"Willy Urassa","is_ca":false},{"name":"Hiroshi Ushijima","is_ca":false},{"name":"Philippe Van de Perre","is_ca":false},{"name":"Guido van der Groen","is_ca":false},{"name":"Kristel Van Laethem","is_ca":false},{"name":"Joep van Oosterhout","is_ca":false},{"name":"Ard van Sighem","is_ca":false},{"name":"Eric Van Wijngaerden","is_ca":false},{"name":"Anne‐Mieke Vandamme","is_ca":false},{"name":"Jurgen Vercauteren","is_ca":false},{"name":"Nicole Vidal","is_ca":false},{"name":"Lesley Wallace","is_ca":false},{"name":"Carolyn Williamson","is_ca":false},{"name":"Dawit Wolday","is_ca":false},{"name":"Jianqing Xu","is_ca":false},{"name":"Chunfu Yang","is_ca":false},{"name":"Linqi Zhang","is_ca":false},{"name":"Rong Zhang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05251747347051103,"gpt":0.3737379588775309,"spread":0.3212204854070199,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.00476128,0.001086372,0.004910843,0.008103931,0.00029214,0.001582029,0.001463311,0.0009260764,0.00163988],"category_scores_gemma":[0.01355408,0.0006439807,0.007215282,0.0104869,0.0004508632,0.001559139,0.001244911,0.0008661881,0.0001745665],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002078634,"about_ca_system_score_gemma":0.006781827,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01509085,"about_ca_topic_score_gemma":0.04631644,"domain_scores_codex":[0.9971128,0.0005161135,0.001247183,0.000473084,0.0005071633,0.0001436982],"domain_scores_gemma":[0.9936586,0.003778966,0.001596241,0.0001386604,0.0007032576,0.0001242006],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.000458424,0.00003188974,0.01741777,0.8250536,0.04064456,0.0001344778,0.000298913,0.0003994962,0.0002954674,0.000416838,0.006452576,0.1083959],"study_design_scores_gemma":[0.0005223645,0.0003719142,0.09410277,0.4603907,0.3879315,0.001231806,0.0009226325,0.0002929266,0.0003272624,0.0009243852,0.05285481,0.0001270108],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001367049,0.997387,0.00006737622,0.0001093748,0.00003386264,0.00003323039,0.0009295599,0.000004312421,0.00006833192],"genre_scores_gemma":[0.01450997,0.9840583,0.0003892634,0.0002348185,0.00004178411,0.00007471976,0.0006402024,0.000002777998,0.00004822766],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9950892,"threshold_uncertainty_score":0.03000605,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163787552","doi":"10.1084/jem.20072681","title":"The failed HIV Merck vaccine study: a step back or a launching point for future vaccine development?","year":2008,"lang":"en","type":"letter","venue":"The Journal of Experimental Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":396,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"HIV vaccine; Virology; AIDS Vaccines; Human immunodeficiency virus (HIV); Medicine; Immunology; Vaccine trial","authors":[{"name":"Rafick‐Pierre Sékaly","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0277286224728915,"gpt":0.3081849565549724,"spread":0.2804563340820809,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01144736,0.001001919,0.00207814,0.0004757339,0.001908005,0.002927013,0.002399414,0.03127405,0.004835613],"category_scores_gemma":[0.02745689,0.000436742,0.001381408,0.0005314367,0.00348239,0.004552153,0.001025898,0.0249804,0.00514673],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003142906,"about_ca_system_score_gemma":0.001811284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008300178,"about_ca_topic_score_gemma":0.001873619,"domain_scores_codex":[0.9940281,0.003087727,0.0005520126,0.0005767096,0.001363932,0.0003916562],"domain_scores_gemma":[0.9845256,0.01065593,0.0007816979,0.0005143939,0.001806102,0.001716297],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004620015,0.0001324216,0.001199558,0.0003064186,0.00006544474,0.004568573,0.0001674366,0.00007677873,0.0006185324,0.005720254,0.9366915,0.04999115],"study_design_scores_gemma":[0.001106029,0.001059105,0.002358905,0.0007636721,0.0001383266,0.0103887,0.0007088289,0.0008527539,0.00130159,0.01758746,0.9636204,0.0001142805],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.0007477393,0.004480768,0.0001582163,0.9774168,0.01589531,0.00001480327,0.00002730482,0.00002610316,0.001233024],"genre_scores_gemma":[0.007188829,0.003576173,0.000489391,0.9381279,0.04770283,0.00004590204,0.00002767204,0.00002189932,0.002819429],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.03127405,"threshold_uncertainty_score":0.06054014,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2066082644","doi":"10.1073/pnas.1415789111","title":"Recombinant HIV envelope trimer selects for quaternary-dependent antibodies targeting the trimer apex","year":2014,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":393,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; European Research Council; Canadian Institutes of Health Research; Direktoratet for Utviklingssamarbeid; Department for International Development; National Institutes of Health; United States Agency for International Development; European Molecular Biology Organization; Udenrigsministeriet; International AIDS Vaccine Initiative; Aids Fonds; Irish Aid; Bill and Melinda Gates Foundation","keywords":"Trimer; Antibody; Context (archaeology); Recombinant DNA; Virology; Antigen; Biology; Chemistry; Immunology; Genetics; Gene","authors":[{"name":"Devin Sok","is_ca":false},{"name":"Marit J. van Gils","is_ca":false},{"name":"Matthias Pauthner","is_ca":false},{"name":"Jean‐Philippe Julien","is_ca":true},{"name":"Karen L. Saye-Francisco","is_ca":false},{"name":"Jessica Hsueh","is_ca":false},{"name":"Bryan Briney","is_ca":false},{"name":"Jeong Hyun Lee","is_ca":false},{"name":"Khoa Le","is_ca":false},{"name":"Peter S. Lee","is_ca":false},{"name":"Yuanzi Hua","is_ca":false},{"name":"Michael S. Seaman","is_ca":false},{"name":"John P. Moore","is_ca":false},{"name":"Andrew B. Ward","is_ca":false},{"name":"Ian A. Wilson","is_ca":false},{"name":"Rogier W. Sanders","is_ca":false},{"name":"Dennis R. Burton","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03807084139699523,"gpt":0.3119769025450869,"spread":0.2739060611480917,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001404918,0.0002048076,0.0001564268,0.0001433566,0.00008719922,0.0001860504,0.0001548663,0.0001664974,0.0007897433],"category_scores_gemma":[0.0001643513,0.00009719916,0.0001322831,0.0001177505,0.00009694941,0.00009228929,0.0001871946,0.0003995597,0.0003513277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001483228,"about_ca_system_score_gemma":0.00009215501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004956101,"about_ca_topic_score_gemma":0.0006815299,"domain_scores_codex":[0.9998915,0.000021201,0.000005996893,0.00001944072,0.00003380052,0.00002801237],"domain_scores_gemma":[0.9999206,0.00002492512,0.00001543913,0.00001289858,0.00001010348,0.00001595866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003811627,0.00001396449,0.000674492,0.000007979492,0.000002253266,0.0000189432,0.000006170156,0.0000522284,0.9978187,0.00003247394,0.00003622645,0.001298471],"study_design_scores_gemma":[0.00001969667,0.000535488,0.01429006,0.000005501478,0.00002003766,0.0006874173,0.00002455443,0.002065954,0.9802216,0.00004919635,0.002076965,0.000003532051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959872,0.0002656931,0.002405261,0.00002356135,0.000005834912,0.00002406737,0.0001278365,0.00004388196,0.001116503],"genre_scores_gemma":[0.9944528,0.0002160612,0.003572899,0.00006198301,0.000006226725,0.00001092558,0.0005318155,0.00001327184,0.001133853],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007897433,"threshold_uncertainty_score":0.002641916,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2766409016","doi":"10.1016/j.celrep.2017.09.081","title":"Identification of Genetically Intact HIV-1 Proviruses in Specific CD4+ T Cells from Effectively Treated Participants","year":2017,"lang":"en","type":"article","venue":"Cell Reports","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":390,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Australian Centre for HIV and Hepatitis Virology Research; amfAR, The Foundation for AIDS Research","keywords":"Biology; Genome; Effector; Genetics; Replication (statistics); Viral replication; Virology; Virus latency; Lentivirus; Human immunodeficiency virus (HIV); Computational biology; Virus; Gene; Viral disease; Immunology","authors":[{"name":"Bonnie Hiener","is_ca":false},{"name":"Bethany A. Horsburgh","is_ca":false},{"name":"John‐Sebastian Eden","is_ca":false},{"name":"Kirston Barton","is_ca":false},{"name":"Timothy E. Schlub","is_ca":false},{"name":"Eunok Lee","is_ca":false},{"name":"Susanne von Stockenström","is_ca":false},{"name":"Lina Odevall","is_ca":false},{"name":"Jeffrey M. Milush","is_ca":false},{"name":"Teri Liegler","is_ca":false},{"name":"Elizabeth Sinclair","is_ca":false},{"name":"Rebecca Hoh","is_ca":false},{"name":"Eli Boritz","is_ca":false},{"name":"Daniel C. Douek","is_ca":false},{"name":"Rémi Fromentin","is_ca":true},{"name":"Nicolas Chomont","is_ca":true},{"name":"Steven G. Deeks","is_ca":false},{"name":"Frederick Hecht","is_ca":false},{"name":"Sarah Palmer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02921280331246488,"gpt":0.2860198404964453,"spread":0.2568070371839804,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002113283,0.0002311154,0.0002585272,0.0004825458,0.0003726548,0.0004066636,0.0002468941,0.000492172,0.001716195],"category_scores_gemma":[0.0005523415,0.0001349418,0.0001444669,0.0001719533,0.0003495462,0.0002311211,0.0003343439,0.0003999729,0.0001781236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001744821,"about_ca_system_score_gemma":0.0001171378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001399886,"about_ca_topic_score_gemma":0.001441458,"domain_scores_codex":[0.9998366,0.00002197158,0.00001517526,0.00005381566,0.00002824254,0.00004426173],"domain_scores_gemma":[0.9997799,0.00005063082,0.00002828331,0.00003072774,0.00004132197,0.00006916202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.006282358,0.0007048137,0.235584,0.0001185023,0.00009637883,0.002206024,0.002735704,0.0004809012,0.7030573,0.000255583,0.0003557981,0.04812268],"study_design_scores_gemma":[0.0001274179,0.005261604,0.8253475,0.00004034955,0.0002390405,0.006387341,0.002884011,0.002342157,0.1545373,0.0005136246,0.00225822,0.00006135368],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988497,0.0001151278,0.0003333438,0.00001607102,0.000004400054,0.0000216576,0.0001664072,0.000008226548,0.0004849881],"genre_scores_gemma":[0.9987782,0.00003622837,0.000282882,0.00002119896,0.000003559712,0.00002042007,0.0001778354,0.000004537229,0.00067511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001716195,"threshold_uncertainty_score":0.005741239,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171536421","doi":"10.1146/annurev-immunol-030409-101256","title":"The Role of Antibodies in HIV Vaccines","year":2010,"lang":"en","type":"review","venue":"Annual Review of Immunology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":385,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"York University","keywords":"Virology; Antibody; Biology; Epitope; Immunology; Virus; Neutralizing antibody; Viral envelope; AIDS Vaccines; Antibody-dependent enhancement; HIV vaccine; Vaccine trial; Viral replication","authors":[{"name":"John R. Mascola","is_ca":false},{"name":"David C. Montefiori","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01235802955377193,"gpt":0.3265787039025723,"spread":0.3142206743488004,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001540081,0.00118097,0.001775514,0.001562299,0.0005946885,0.00205886,0.001367578,0.003343249,0.003683328],"category_scores_gemma":[0.0009738175,0.0005441305,0.0005099764,0.001628043,0.002030335,0.003199883,0.001206752,0.004450999,0.004857779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001835528,"about_ca_system_score_gemma":0.001382873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001054956,"about_ca_topic_score_gemma":0.0009245745,"domain_scores_codex":[0.9994211,0.000167711,0.0000442723,0.00008311647,0.0002238867,0.00005983481],"domain_scores_gemma":[0.9995178,0.0002504309,0.00005058888,0.00002539871,0.0001000137,0.00005582402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000081086,0.0001056045,0.0001661066,0.008067651,0.00005670809,0.0002906844,0.0001260379,0.0005097473,0.005363868,0.04215861,0.03453589,0.9085379],"study_design_scores_gemma":[0.00001718283,0.00008610357,0.0002398797,0.001335519,0.00002372215,0.0006305058,0.00003774519,0.0000705399,0.001035242,0.009773008,0.9867372,0.00001335956],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00009680528,0.9969884,0.0002567704,0.0005255187,0.0004021928,0.000004860213,0.000005212955,0.000007719163,0.001712486],"genre_scores_gemma":[0.001328147,0.9953921,0.000422052,0.0006236127,0.0004885691,0.00001586481,0.00001153486,0.000002835232,0.001715346],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003683328,"threshold_uncertainty_score":0.0133177,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2103059036","doi":"10.4049/jimmunol.164.3.1602","title":"HIV-1-Specific Mucosal CD8+ Lymphocyte Responses in the Cervix of HIV-1-Resistant Prostitutes in Nairobi","year":2000,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":382,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University of Manitoba","funders":"","keywords":"Immunology; Cervix; CD8; Immunity; Medicine; Immune system; CTL*; Cellular immunity; Virology; Biology; Internal medicine","authors":[{"name":"Rupert Kaul","is_ca":false},{"name":"Francis A. Plummer","is_ca":true},{"name":"Joshua Kimani","is_ca":false},{"name":"Tao Dong","is_ca":false},{"name":"Peter Kiama","is_ca":false},{"name":"Timothy Rostron","is_ca":false},{"name":"Ephantus Njagi","is_ca":false},{"name":"Kelly S. MacDonald","is_ca":true},{"name":"Job J. Bwayo","is_ca":false},{"name":"Andrew J. McMichael","is_ca":false},{"name":"Sarah Rowland‐Jones","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01648034678438567,"gpt":0.253607464389536,"spread":0.2371271176051503,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001708759,0.0002988595,0.0003388547,0.0005210134,0.001083186,0.0005253817,0.0002634892,0.0005922432,0.001719889],"category_scores_gemma":[0.0006772272,0.0005409342,0.0001116891,0.0002452909,0.0006229823,0.000228938,0.000424605,0.0003517587,0.0002909662],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000614065,"about_ca_system_score_gemma":0.0003105901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02088345,"about_ca_topic_score_gemma":0.03385996,"domain_scores_codex":[0.9998423,0.00002445172,0.00001133749,0.00004031284,0.0000273301,0.00005425838],"domain_scores_gemma":[0.9998732,0.00001967483,0.00003095501,0.0000154554,0.00002435129,0.00003636829],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007584487,0.000164287,0.8149444,0.000132701,0.00005202766,0.001194981,0.005278619,0.0001001539,0.1688011,0.00006816742,0.0001820277,0.008323065],"study_design_scores_gemma":[0.00001319628,0.0003168378,0.9948946,0.00001591523,0.00001877112,0.001089488,0.001348709,0.00007928745,0.001650024,0.0000266624,0.000540746,0.000005796295],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993411,0.0001728739,0.00002328198,0.0000196665,0.000001505826,0.00001005724,0.00004993987,0.000002029692,0.0003793823],"genre_scores_gemma":[0.9988629,0.000184046,0.0000716366,0.00007014404,0.000003741499,0.00001182025,0.0001438798,0.000001977492,0.0006499187],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02088345,"threshold_uncertainty_score":0.04152375,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2605860823","doi":"10.1016/j.chom.2017.03.008","title":"Defective HIV-1 Proviruses Are Expressed and Can Be Recognized by Cytotoxic T Lymphocytes, which Shape the Proviral Landscape","year":2017,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":381,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Maple Leaf Medical Clinic; University of Toronto","funders":"National Institutes of Health; National Institute of General Medical Sciences; amfAR, The Foundation for AIDS Research; Gilead Sciences; National Institute of Allergy and Infectious Diseases; Center for AIDS Research, Johns Hopkins University; Delaney AIDS Research Enterprise; Bill and Melinda Gates Foundation; W. W. Smith Charitable Trust; Howard Hughes Medical Institute","keywords":"Biology; Cytotoxic T cell; Virology; CTL*; Epitope; Immunology; Genetics; Antigen; In vitro","authors":[{"name":"Ross A. Pollack","is_ca":false},{"name":"R. Brad Jones","is_ca":false},{"name":"Mihaela Pertea","is_ca":false},{"name":"Katherine M. Bruner","is_ca":false},{"name":"Alyssa R. Martin","is_ca":false},{"name":"Allison S. Thomas","is_ca":false},{"name":"Adam A. Capoferri","is_ca":false},{"name":"Subul Beg","is_ca":false},{"name":"Szu-Han Huang","is_ca":false},{"name":"Sara Karandish","is_ca":false},{"name":"Haiping Hao","is_ca":false},{"name":"Eitan Halper‐Stromberg","is_ca":false},{"name":"Patrick C. Yong","is_ca":false},{"name":"Colin Kovacs","is_ca":true},{"name":"Erika Benko","is_ca":true},{"name":"Robert F. Siliciano","is_ca":false},{"name":"Ya‐Chi Ho","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01438861376177691,"gpt":0.2408391648171034,"spread":0.2264505510553265,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002665391,0.0005589611,0.0004131715,0.0004821091,0.0003691314,0.001978546,0.00031284,0.000674258,0.003173245],"category_scores_gemma":[0.0005195101,0.0003596981,0.0004374131,0.0002196014,0.0006108205,0.0008828167,0.0006719822,0.00183775,0.001820355],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000794886,"about_ca_system_score_gemma":0.0002215323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003143252,"about_ca_topic_score_gemma":0.0003504328,"domain_scores_codex":[0.9995263,0.00005712768,0.00001858998,0.000100844,0.0001539831,0.0001432885],"domain_scores_gemma":[0.999782,0.00004323875,0.00004765398,0.00004104536,0.00003890013,0.00004717458],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001316246,0.0000306655,0.001516453,0.00007188008,0.0000173901,0.0001714375,0.00009219116,0.0002852654,0.9873405,0.002399104,0.0003229098,0.007620551],"study_design_scores_gemma":[0.00006721049,0.0003265444,0.01371552,0.00005917406,0.00005835452,0.001950765,0.0004370995,0.002996329,0.9602097,0.00378072,0.01636332,0.00003521428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9701292,0.008789707,0.01129256,0.0004384339,0.0002376802,0.00005420373,0.0004243142,0.0002197515,0.008414131],"genre_scores_gemma":[0.9911674,0.001203597,0.002738345,0.00017443,0.00004871738,0.00002124707,0.000483564,0.00006886652,0.00409402],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003173245,"threshold_uncertainty_score":0.01061553,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149951876","doi":"10.1099/vir.0.19110-0","title":"Mechanisms of CD4+ T lymphocyte cell death in human immunodeficiency virus infection and AIDS","year":2003,"lang":"en","type":"review","venue":"Journal of General Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":373,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Research Manitoba; Manitoba Health Research Council","keywords":"Biology; Bystander effect; Programmed cell death; Immune system; Immunology; Apoptosis; Virology; Cytokine; Virus; T lymphocyte; Lymphocyte","authors":[{"name":"Judie B. Alimonti","is_ca":true},{"name":"T. Blake Ball","is_ca":true},{"name":"Keith R. Fowke","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03028451036624019,"gpt":0.3155161857226718,"spread":0.2852316753564316,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005506953,0.0005107345,0.0005295168,0.00118876,0.0004606131,0.001069695,0.0007022892,0.001136694,0.002491473],"category_scores_gemma":[0.000279968,0.0002235476,0.0003284195,0.0004600861,0.0009574919,0.0008081471,0.0009889685,0.001119112,0.0004815599],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008898113,"about_ca_system_score_gemma":0.0004527666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000469179,"about_ca_topic_score_gemma":0.0004259739,"domain_scores_codex":[0.9997606,0.00006670333,0.00001938061,0.00002980613,0.00006453036,0.00005897157],"domain_scores_gemma":[0.9998744,0.00002750454,0.00003279735,0.000007566352,0.00002149752,0.00003631649],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001998341,0.0007117788,0.01584275,0.00814794,0.0004035083,0.009699782,0.002176989,0.003606965,0.118379,0.1832728,0.03319063,0.6225695],"study_design_scores_gemma":[0.0006434859,0.003785327,0.06670275,0.003251834,0.0004519197,0.03033087,0.001862416,0.003827389,0.04759358,0.21239,0.6289553,0.0002051106],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.05206359,0.9200724,0.003089332,0.004740817,0.001248318,0.0001081544,0.0001299328,0.0001288126,0.0184187],"genre_scores_gemma":[0.4961556,0.4819292,0.002609372,0.003023908,0.002276289,0.0002394064,0.0002638745,0.00001131209,0.0134909],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002491473,"threshold_uncertainty_score":0.008334816,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3215818615","doi":"10.1038/s41591-021-01590-5","title":"Research priorities for an HIV cure: International AIDS Society Global Scientific Strategy 2021","year":2021,"lang":"en","type":"review","venue":"Nature Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":368,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"AIDS Vancouver; Simon Fraser University; Queen's University; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; Institut National de la Santé et de la Recherche Médicale; Deutsche Forschungsgemeinschaft; National Research Foundation; National Institutes of Health; U.S. Department of Health and Human Services; Sidaction; International AIDS Vaccine Initiative; National Health and Medical Research Council; Bill and Melinda Gates Foundation; Delaney AIDS Research Enterprise","keywords":"Pandemic; Human immunodeficiency virus (HIV); Medicine; Clinical trial; Optimism; Virology; Immunology; Coronavirus disease 2019 (COVID-19); Disease; Psychology; Infectious disease (medical specialty)","authors":[{"name":"Steven G. Deeks","is_ca":false},{"name":"Nancie M. Archin","is_ca":false},{"name":"Paula M. Cannon","is_ca":false},{"name":"Simon Collins","is_ca":false},{"name":"R. Brad Jones","is_ca":false},{"name":"Marein A.W.P. de Jong","is_ca":false},{"name":"Olivier Lambotte","is_ca":false},{"name":"Rosanne Lamplough","is_ca":false},{"name":"Thumbi Ndung’u","is_ca":false},{"name":"Jeremy Sugarman","is_ca":false},{"name":"Caroline T. Tiemessen","is_ca":false},{"name":"Linos Vandekerckhove","is_ca":false},{"name":"Sharon R. Lewin","is_ca":false},{"name":"Marein de Jong","is_ca":true},{"name":"Zaza M. Ndhlovu","is_ca":false},{"name":"Nicolas Chomont","is_ca":false},{"name":"Zabrina L. Brumme","is_ca":false},{"name":"Kai Deng","is_ca":false},{"name":"Luke D. Jasenosky","is_ca":false},{"name":"Richard Jefferys","is_ca":false},{"name":"Aurelio Orta‐Resendiz","is_ca":false},{"name":"Frank Mardarelli","is_ca":false},{"name":"Monique Nijhuis","is_ca":false},{"name":"Katharine J. Bar","is_ca":false},{"name":"Bonnie J. Howell","is_ca":false},{"name":"Alex Schneider","is_ca":false},{"name":"Gabriela Turk","is_ca":false},{"name":"Rose Nabatanzi","is_ca":false},{"name":"Joel N. Blankson","is_ca":false},{"name":"J. Víctor García","is_ca":false},{"name":"Mirko Paiardini","is_ca":false},{"name":"Jan van Lunzen","is_ca":false},{"name":"Christina Antoniadi","is_ca":false},{"name":"Fernanda Heloise Côrtes","is_ca":false},{"name":"Susana Valente","is_ca":true},{"name":"Ole S. Søgaard","is_ca":false},{"name":"Ricardo Sobhie Diaz","is_ca":false},{"name":"Melannie Ott","is_ca":false},{"name":"Richard M. Dunham","is_ca":false},{"name":"Siegfried Schwarze","is_ca":false},{"name":"Santiago Perez Patrigeon","is_ca":false},{"name":"Josephine Nabukenya","is_ca":false},{"name":"Marina Caskey","is_ca":false},{"name":"Beatriz Mothe","is_ca":false},{"name":"Fu Sheng Wang","is_ca":false},{"name":"Sarah Fidler","is_ca":false},{"name":"Devi SenGupta","is_ca":false},{"name":"Stephan Dressler","is_ca":false},{"name":"Mitch Matoga","is_ca":false},{"name":"Hans‐Peter Kiem","is_ca":false},{"name":"Pablo Tebas","is_ca":false},{"name":"Cissy Kityo","is_ca":false},{"name":"Boro Dropulić","is_ca":false},{"name":"Michael Louella","is_ca":false},{"name":"Kumitaa Theva Das","is_ca":false},{"name":"Deborah Persaud","is_ca":false},{"name":"Ann Chahroudi","is_ca":false},{"name":"Katherine Luzuriaga","is_ca":false},{"name":"Thanyawee Puthanakit","is_ca":false},{"name":"Jeffrey T. Safrit","is_ca":false},{"name":"Gaerolwe Masheto","is_ca":false},{"name":"Karine Dubé","is_ca":false},{"name":"Jennifer Power","is_ca":false},{"name":"Jessica Salzwedel","is_ca":false},{"name":"Udom Likhitwonnawut","is_ca":false},{"name":"Jeff Taylor","is_ca":false},{"name":"Oguzhan Latif Nuh","is_ca":false},{"name":"Krista L. Dong","is_ca":false},{"name":"Edward Nelson Kankaka","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1094348316679624,"gpt":0.4856932708425364,"spread":0.376258439174574,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003267765,0.001960967,0.002201766,0.003201347,0.0007406045,0.0031373,0.001301132,0.005095424,0.01681594],"category_scores_gemma":[0.00378113,0.0005050818,0.0008505588,0.002940367,0.0009460637,0.004498034,0.002628515,0.005986683,0.008508109],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00286218,"about_ca_system_score_gemma":0.01226439,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002667492,"about_ca_topic_score_gemma":0.006215104,"domain_scores_codex":[0.9990485,0.0002242677,0.00009918287,0.00007706424,0.0003760515,0.0001748185],"domain_scores_gemma":[0.9974973,0.0008605403,0.0002895021,0.00005101474,0.0007598091,0.0005417862],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008605039,0.00006485508,0.00006250099,0.00685568,0.00004990799,0.0001204374,0.00004090024,0.0002427557,0.0004297124,0.006457031,0.5344307,0.4511594],"study_design_scores_gemma":[0.00001848974,0.00003027479,0.0001436469,0.003197131,0.00003971224,0.0001422261,0.00003844937,0.00004368447,0.00005190331,0.002276881,0.9940081,0.000009690219],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00003751793,0.9730959,0.0001865569,0.01241132,0.01067255,0.00001090307,0.00007326597,0.00003310564,0.003478849],"genre_scores_gemma":[0.0006817935,0.9701231,0.0004871358,0.01551964,0.007611591,0.0000282422,0.0002101593,0.00001176562,0.005326566],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01681594,"threshold_uncertainty_score":0.05625486,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3111050887","doi":"10.1016/s0140-6736(20)32666-0","title":"Long-acting cabotegravir and rilpivirine dosed every 2 months in adults with HIV-1 infection (ATLAS-2M), 48-week results: a randomised, multicentre, open-label, phase 3b, non-inferiority study","year":2020,"lang":"en","type":"article","venue":"The Lancet","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":364,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"ViiV Healthcare","keywords":"Rilpivirine; Medicine; Human immunodeficiency virus (HIV); Internal medicine; Emtricitabine; Tenofovir; Open label; Clinical trial; Virology; Antiretroviral therapy; Viral load","authors":[{"name":"Edgar T. Overton","is_ca":false},{"name":"Gary Richmond","is_ca":false},{"name":"Giuliano Rizzardini","is_ca":false},{"name":"Hans Jaeger","is_ca":false},{"name":"Catherine Orrell","is_ca":false},{"name":"Ф. И. Нагимова","is_ca":false},{"name":"Fritz Bredeek","is_ca":false},{"name":"Miguel García Deltoro","is_ca":false},{"name":"Susan Swindells","is_ca":false},{"name":"Jaime Andrade‐Villanueva","is_ca":false},{"name":"Alexander Wong","is_ca":true},{"name":"Marie-Aude Khuong-Josses","is_ca":false},{"name":"Rodica Van Solingen‐Ristea","is_ca":false},{"name":"Veerle Van Eygen","is_ca":false},{"name":"Herta Crauwels","is_ca":false},{"name":"Susan L. Ford","is_ca":false},{"name":"Christine L. Talarico","is_ca":false},{"name":"Paul Benn","is_ca":false},{"name":"Yuanyuan Wang","is_ca":false},{"name":"Krischan J Hudson","is_ca":false},{"name":"Vasiliki Chounta","is_ca":false},{"name":"Amy Cutrell","is_ca":false},{"name":"Parul Patel","is_ca":false},{"name":"Mark S. Shaefer","is_ca":false},{"name":"David A. Margolis","is_ca":false},{"name":"Kimberly Y. Smith","is_ca":false},{"name":"Simon Vanveggel","is_ca":false},{"name":"William Spreen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03775309755968166,"gpt":0.3165012276065506,"spread":0.278748130046869,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002504159,0.001874798,0.003273112,0.0004213153,0.0004010669,0.001559697,0.001174692,0.002328724,0.008486989],"category_scores_gemma":[0.001868035,0.0009019824,0.0021538,0.0004015186,0.001317664,0.001550715,0.0004592312,0.003065329,0.001510573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008700668,"about_ca_system_score_gemma":0.0009699556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001347808,"about_ca_topic_score_gemma":0.002691187,"domain_scores_codex":[0.99903,0.0005435276,0.00004250799,0.0001491958,0.00007813258,0.0001566329],"domain_scores_gemma":[0.9988915,0.0003337289,0.0002145653,0.0001256032,0.00006104476,0.0003735146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.9792964,0.004805841,0.0006233266,0.0003702316,0.0007763922,0.00003998974,0.00006068938,0.0002493804,0.002529069,0.00009329469,0.0007624087,0.01039293],"study_design_scores_gemma":[0.9483007,0.04772672,0.002556678,0.00002367635,0.0003473314,0.00003728467,0.00002520128,0.0001987493,0.0001804146,0.0001298552,0.0004542937,0.00001916457],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884034,0.004173685,0.0005339375,0.0005387317,0.0003214715,0.001741206,0.001931458,0.000147635,0.002208496],"genre_scores_gemma":[0.9849156,0.002305255,0.001938293,0.001378904,0.0004412973,0.002441258,0.001921461,0.00005181603,0.004606094],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008486989,"threshold_uncertainty_score":0.02839178,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2105240629","doi":"10.1371/journal.ppat.1000917","title":"Perforin Expression Directly Ex Vivo by HIV-Specific CD8+ T-Cells Is a Correlate of HIV Elite Control","year":2010,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":363,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; University of Alabama at Birmingham; Howard Hughes Medical Institute","keywords":"Perforin; Biology; TIGIT; Cytotoxic T cell; Ex vivo; CD8; Degranulation; Immunology; T cell; Immune system; Cell biology; In vivo; Receptor; In vitro","authors":[{"name":"Adam R. Hersperger","is_ca":false},{"name":"Florencia Pereyra","is_ca":false},{"name":"Martha Nason","is_ca":false},{"name":"Korey Demers","is_ca":false},{"name":"Prameet M. Sheth","is_ca":true},{"name":"Lucy Y. Shin","is_ca":true},{"name":"Colin Kovacs","is_ca":false},{"name":"Benigno Rodríguez","is_ca":false},{"name":"Scott F. Sieg","is_ca":false},{"name":"Leia Teixeira-Johnson","is_ca":false},{"name":"Debbie Gudonis","is_ca":false},{"name":"Paul Goepfert","is_ca":false},{"name":"Michael M. Lederman","is_ca":false},{"name":"Ian Frank","is_ca":false},{"name":"George Makedonas","is_ca":false},{"name":"Rupert Kaul","is_ca":true},{"name":"Bruce D. Walker","is_ca":false},{"name":"Michael R. Betts","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00953452734200619,"gpt":0.2175997513916768,"spread":0.2080652240496706,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002442144,0.0002449903,0.0002445427,0.000397591,0.0002031047,0.0005636743,0.0001480035,0.0001976671,0.001214551],"category_scores_gemma":[0.0005955035,0.0001066539,0.00007697217,0.0002452623,0.0002488552,0.0003791237,0.0003414288,0.0004323157,0.0001509027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001108913,"about_ca_system_score_gemma":0.00006181686,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001718627,"about_ca_topic_score_gemma":0.0001347004,"domain_scores_codex":[0.9998032,0.00002824959,0.00002200184,0.00006116403,0.0000354891,0.0000498407],"domain_scores_gemma":[0.9995746,0.00009310841,0.0001432316,0.00005461693,0.00005042937,0.00008399482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007674892,0.0001613904,0.146442,0.00007619087,0.00003203104,0.0005122988,0.0003847358,0.0001317415,0.8369632,0.0001142747,0.00006372442,0.01435088],"study_design_scores_gemma":[0.00004664639,0.002437501,0.7984052,0.00002427092,0.00009523433,0.004554888,0.0004920682,0.000805029,0.1914014,0.0003684893,0.001354757,0.00001462568],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991187,0.0002561769,0.000260771,0.000007936909,0.000001703912,0.000007976381,0.00005068876,0.00000871605,0.000287333],"genre_scores_gemma":[0.9994073,0.0001239887,0.0001364588,0.00001225842,0.000007866546,0.00001024802,0.0001077612,0.000003061675,0.0001910944],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001214551,"threshold_uncertainty_score":0.004063129,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2286883753","doi":"10.1073/pnas.1520112113","title":"CXCL13 is a plasma biomarker of germinal center activity","year":2016,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":358,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases","keywords":"CXCL13; Germinal center; CXCR5; Chemokine; B cell; Biomarker; Immunology; Antibody; Plasma cell; Chemokine receptor; Biology; Immune system","authors":[{"name":"Colin Havenar‐Daughton","is_ca":false},{"name":"Madelene Lindqvist","is_ca":false},{"name":"Antje Heit","is_ca":false},{"name":"Jennifer E. Wu","is_ca":false},{"name":"Samantha Reiss","is_ca":false},{"name":"Kayla Kendric","is_ca":false},{"name":"Simon Bélanger","is_ca":false},{"name":"Sudhir Pai Kasturi","is_ca":false},{"name":"Elise Landais","is_ca":false},{"name":"Rama Akondy","is_ca":false},{"name":"Helen M. McGuire","is_ca":false},{"name":"Marcella Bothwell","is_ca":false},{"name":"Parsia A. Vagefi","is_ca":false},{"name":"Eileen P. Scully","is_ca":false},{"name":"Georgia D. Tomaras","is_ca":false},{"name":"Mark M. Davis","is_ca":false},{"name":"Pascal Poignard","is_ca":false},{"name":"Rafi Ahmed","is_ca":false},{"name":"Bruce D. Walker","is_ca":false},{"name":"Bali Pulendran","is_ca":false},{"name":"M. Juliana McElrath","is_ca":true},{"name":"Daniel E. Kaufmann","is_ca":true},{"name":"Shane Crotty","is_ca":false},{"name":"Matt A. Price","is_ca":false},{"name":"Jill Gilmour","is_ca":false},{"name":"Pat Fast","is_ca":false},{"name":"Anatoli Kamali","is_ca":false},{"name":"Eduard J. Sanders","is_ca":false},{"name":"Omu Onzala","is_ca":false},{"name":"Susan Allen","is_ca":false},{"name":"Eric Hunter","is_ca":false},{"name":"Etienne Karita","is_ca":false},{"name":"William Kilembe","is_ca":false},{"name":"Shabir Lakhi","is_ca":false},{"name":"Mubiana Inambao","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05297951476312599,"gpt":0.3276082142439938,"spread":0.2746286994808678,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006038938,0.0004216091,0.0004924642,0.0009037438,0.0002005499,0.0007100523,0.000250172,0.0006008982,0.002007928],"category_scores_gemma":[0.001028376,0.0001598436,0.000244671,0.0008042916,0.0003301238,0.0003093663,0.000295012,0.0006128869,0.0003600408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003899518,"about_ca_system_score_gemma":0.0002707984,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000790656,"about_ca_topic_score_gemma":0.0006109928,"domain_scores_codex":[0.9996058,0.0001159505,0.00003226365,0.0001069006,0.00008334194,0.00005573106],"domain_scores_gemma":[0.9992445,0.0001705362,0.0003174865,0.00004919806,0.000103499,0.0001149255],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.007277803,0.000305253,0.6638544,0.0008260056,0.0003803535,0.0007737295,0.000246809,0.001060867,0.2317615,0.0006369614,0.003929776,0.08894652],"study_design_scores_gemma":[0.0001947266,0.002500812,0.8913707,0.0002179725,0.0002669611,0.005328912,0.0001714153,0.00584545,0.07704888,0.0008116234,0.01617506,0.00006745804],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9723623,0.01139871,0.008308156,0.000393336,0.00008752348,0.0002124128,0.003794832,0.0004015497,0.00304111],"genre_scores_gemma":[0.9914397,0.001180825,0.004316707,0.0002346562,0.00006485397,0.0001125395,0.001615476,0.00002260113,0.001012609],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002007928,"threshold_uncertainty_score":0.006717205,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011541285","doi":"10.1097/00002030-200312050-00005","title":"Influence of HLA-B57 on clinical presentation and viral control during acute HIV-1 infection","year":2003,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":355,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Clinical Research Institute","funders":"","keywords":"Human leukocyte antigen; Immunology; CTL*; Viremia; ELISPOT; Immune system; CD8; Virology; Cytotoxic T cell; Biology; Virus; Medicine; Antigen; Genetics; In vitro","authors":[{"name":"Marcus Altfeld","is_ca":false},{"name":"Marylyn M. Addo","is_ca":false},{"name":"Eric Rosenberg","is_ca":false},{"name":"Frederick Hecht","is_ca":false},{"name":"Paul K. Lee","is_ca":false},{"name":"Martin Vogel","is_ca":false},{"name":"Xu G. Yu","is_ca":false},{"name":"Rika Draenert","is_ca":false},{"name":"Mary N. Johnston","is_ca":false},{"name":"Daryld Strick","is_ca":false},{"name":"Todd M. Allen","is_ca":false},{"name":"Margaret E. Feeney","is_ca":false},{"name":"James O. Kahn","is_ca":false},{"name":"Rafick‐Pierre Sékaly","is_ca":true},{"name":"Jay A. Levy","is_ca":false},{"name":"Jürgen K. Rockstroh","is_ca":false},{"name":"Philip JR Goulder","is_ca":false},{"name":"Bruce D. Walker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01286789330514754,"gpt":0.3200407839316597,"spread":0.3071728906265122,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003648731,0.0001776924,0.0002031676,0.0001897896,0.0001536054,0.0003430285,0.0001083954,0.0002075927,0.001210305],"category_scores_gemma":[0.001698248,0.00007604343,0.00009147803,0.0001681498,0.0002066026,0.0001980994,0.0001860047,0.0003149363,0.0001801683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001267913,"about_ca_system_score_gemma":0.00009852343,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002510939,"about_ca_topic_score_gemma":0.0001871785,"domain_scores_codex":[0.9997461,0.00009433719,0.00002734128,0.00004012272,0.00003425237,0.0000578927],"domain_scores_gemma":[0.9989603,0.0004067441,0.0003291986,0.0000464829,0.0000579136,0.0001994218],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004840766,0.0003769365,0.8827239,0.0000859725,0.00006986843,0.001663043,0.000300762,0.0002247854,0.08503748,0.00006352021,0.0001650375,0.02444806],"study_design_scores_gemma":[0.00002963173,0.001360542,0.9896888,0.00001851469,0.00003460114,0.003525991,0.000154979,0.0002647486,0.004663229,0.0000354774,0.0002171636,0.00000621045],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995758,0.000165822,0.00004004994,0.000006643776,0.000001766752,0.000003483798,0.00001382762,0.000001457146,0.0001911545],"genre_scores_gemma":[0.9998487,0.00004630213,0.00002910835,0.000006250114,0.000003265873,0.000002097831,0.00002156508,0.000001136718,0.00004163833],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001210305,"threshold_uncertainty_score":0.004048884,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2001356550","doi":"10.1128/jvi.74.15.6790-6799.2000","title":"The Human Factors YY1 and LSF Repress the Human Immunodeficiency Virus Type 1 Long Terminal Repeat via Recruitment of Histone Deacetylase 1","year":2000,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":346,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Medical Research Council Canada; National Institute of General Medical Sciences; Medical Research Council; Dana-Farber Cancer Institute; Infectious Diseases Society of America","keywords":"Biology; Repressor; YY1; Trichostatin A; Psychological repression; Long terminal repeat; Histone deacetylase; HDAC1; HIV Long Terminal Repeat; Transcription factor; Virology; Molecular biology; Promoter; Histone; Genetics; Gene; Gene expression","authors":[{"name":"Jason J. Coull","is_ca":false},{"name":"Fabio Romerio","is_ca":false},{"name":"Jian-Min Sun","is_ca":true},{"name":"J Völker","is_ca":false},{"name":"Katherine Galvin","is_ca":false},{"name":"James Davie","is_ca":true},{"name":"Yang Shi","is_ca":false},{"name":"Ulla Hansen","is_ca":false},{"name":"David M. Margolis","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0410924279099917,"gpt":0.3518681179079235,"spread":0.3107756899979318,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001381051,0.0003655109,0.0001250162,0.0001610973,0.0001602558,0.000368972,0.0001658118,0.0001450242,0.002060708],"category_scores_gemma":[0.0002085931,0.0001248989,0.0001595034,0.00007863066,0.0002367804,0.0001499307,0.0002675445,0.0003030889,0.0005377582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004992087,"about_ca_system_score_gemma":0.0002912026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007489948,"about_ca_topic_score_gemma":0.001203579,"domain_scores_codex":[0.9999002,0.00001382301,0.00000655495,0.00002206318,0.0000291927,0.00002810917],"domain_scores_gemma":[0.999921,0.00001092067,0.00002672832,0.000007773392,0.000007935566,0.0000255952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001395711,0.00001318175,0.0009161347,0.00003802549,0.00000810783,0.00004552492,0.00001824337,0.00006486898,0.9940439,0.0002889351,0.0001666428,0.004256925],"study_design_scores_gemma":[0.00004474297,0.0003178453,0.02325284,0.00001794727,0.00002708555,0.0005086423,0.00006144495,0.001750264,0.9503322,0.0003453753,0.02333242,0.00000911772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9782898,0.01224501,0.00464303,0.0002564589,0.00009181227,0.00003165243,0.0006061402,0.0001711361,0.003665098],"genre_scores_gemma":[0.9903945,0.001841862,0.001545642,0.00007124433,0.00003456788,0.00003025043,0.0007442643,0.00002103108,0.005316702],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002060708,"threshold_uncertainty_score":0.006893754,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2807106468","doi":"10.1038/s41591-018-0026-6","title":"Rapid HIV RNA rebound after antiretroviral treatment interruption in persons durably suppressed in Fiebig I acute HIV infection","year":2018,"lang":"en","type":"article","venue":"Nature Medicine","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":333,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"U.S. Army Medical Research Acquisition Activity; National Institute of Allergy and Infectious Diseases; U.S. Department of Defense; Gilead Sciences; ViiV Healthcare; Henry M. Jackson Foundation; National Cancer Institute; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Antiretroviral therapy; Human immunodeficiency virus (HIV); Virology; Viral load; Antiretroviral treatment; Medicine; Immunology","authors":[{"name":"Donn Colby","is_ca":false},{"name":"Lydie Trautmann","is_ca":false},{"name":"Suteeraporn Pinyakorn","is_ca":true},{"name":"Louise Leyre","is_ca":true},{"name":"Amélie Pagliuzza","is_ca":true},{"name":"Eugène Kroon","is_ca":false},{"name":"Morgane Rolland","is_ca":false},{"name":"Hiroshi Takata","is_ca":false},{"name":"Supranee Buranapraditkun","is_ca":false},{"name":"Jintana Intasan","is_ca":false},{"name":"Nitiya Chomchey","is_ca":false},{"name":"Roshell Muir","is_ca":false},{"name":"Elias K. Haddad","is_ca":false},{"name":"Sodsai Tovanabutra","is_ca":false},{"name":"Sasiwimol Ubolyam","is_ca":false},{"name":"Diane L. Bolton","is_ca":false},{"name":"Brandie Fullmer","is_ca":false},{"name":"Robert J. Gorelick","is_ca":false},{"name":"Lawrence Fox","is_ca":false},{"name":"Trevor A. Crowell","is_ca":false},{"name":"Rapee Trichavaroj","is_ca":false},{"name":"Robert J. O’Connell","is_ca":true},{"name":"Nicolas Chomont","is_ca":true},{"name":"Jérôme H. Kim","is_ca":false},{"name":"Nelson L. Michael","is_ca":false},{"name":"Merlin L. Robb","is_ca":false},{"name":"Nittaya Phanuphak","is_ca":false},{"name":"Jintanat Ananworanich","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01499200530748274,"gpt":0.3063019294777157,"spread":0.291309924170233,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004378156,0.0004089007,0.0006302507,0.0006510321,0.0008868741,0.00119077,0.0005271449,0.001125264,0.002463256],"category_scores_gemma":[0.003740803,0.0003437691,0.0004286461,0.0005746484,0.0003137235,0.0008169093,0.0004773376,0.001359304,0.000371461],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005634914,"about_ca_system_score_gemma":0.0005039724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005409429,"about_ca_topic_score_gemma":0.005189524,"domain_scores_codex":[0.9994965,0.00008099619,0.00003802839,0.00006983533,0.00007755039,0.0002371234],"domain_scores_gemma":[0.9986683,0.0003851356,0.0004990922,0.00005895025,0.00008554427,0.0003029516],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002726142,0.0003179105,0.9753734,0.00006154506,0.00007622985,0.006001818,0.0005962325,0.0001550991,0.001348552,0.0001131514,0.0006493794,0.01258049],"study_design_scores_gemma":[0.00004468434,0.0009208082,0.9906776,0.00008047562,0.0001188493,0.004786488,0.001449994,0.0005422139,0.0003849613,0.0001689956,0.0007975069,0.00002751418],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974547,0.0007982399,0.00007867094,0.0001745133,0.00003913829,0.00001704527,0.0001322787,0.00001121076,0.001294162],"genre_scores_gemma":[0.9992637,0.0001864168,0.00004419854,0.000105062,0.00003514609,0.000006542586,0.0001208323,0.000002684808,0.000235459],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005409429,"threshold_uncertainty_score":0.01075584,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078673393","doi":"10.1371/journal.pbio.0030041","title":"SIRT1 Regulates HIV Transcription via Tat Deacetylation","year":2005,"lang":"en","type":"article","venue":"PLoS Biology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":329,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Regional Cancer Foundation","funders":"National Institutes of Health; Gladstone Institutes; Division of Chemistry; Ellison Medical Foundation","keywords":"Transactivation; Biology; Coactivator; Sirtuin 1; Acetylation; Gene knockdown; Histone deacetylase; P300-CBP Transcription Factors; Transcription (linguistics); PCAF; Histone; Sirtuin; Cell biology; HDAC4; Transcription factor; Molecular biology; Histone Acetyltransferases; Biochemistry; Downregulation and upregulation; Gene","authors":[{"name":"Sara Pagans","is_ca":false},{"name":"Angelika Pedal","is_ca":false},{"name":"Brian J. North","is_ca":false},{"name":"Katrin Kaehlcke","is_ca":false},{"name":"Brett Marshall","is_ca":false},{"name":"Alexander Dorr","is_ca":false},{"name":"Claudia Hetzer‐Egger","is_ca":false},{"name":"Peter Henklein","is_ca":false},{"name":"Roy A. Frye","is_ca":false},{"name":"Michael W. McBurney","is_ca":true},{"name":"Henning Hruby","is_ca":false},{"name":"Manfred Jung","is_ca":false},{"name":"Eric Verdin","is_ca":false},{"name":"Mélanie Ott","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01880259319956191,"gpt":0.2496259835137341,"spread":0.2308233903141722,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001446369,0.0003165642,0.0002020603,0.0001790235,0.000296948,0.0005050816,0.0002687118,0.000265883,0.001600422],"category_scores_gemma":[0.000165535,0.0001903367,0.0003129707,0.0001196702,0.0002423902,0.0002152932,0.000216675,0.0005298048,0.0007087006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005713704,"about_ca_system_score_gemma":0.0001895961,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005968633,"about_ca_topic_score_gemma":0.001346868,"domain_scores_codex":[0.999881,0.00002117575,0.000006493538,0.00002926361,0.00003301338,0.00002910841],"domain_scores_gemma":[0.9999219,0.00001076668,0.00002490476,0.000009917954,0.0000135035,0.00001904482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001891061,0.00002604951,0.001007168,0.00008712833,0.00001709601,0.0001299228,0.00004346231,0.0001910264,0.9888965,0.0007973732,0.0004133575,0.008201804],"study_design_scores_gemma":[0.00004513705,0.0001781443,0.01250768,0.0000139788,0.00004042071,0.0004555655,0.00004857266,0.002184127,0.965133,0.0005333934,0.01884415,0.00001588408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9623523,0.0176514,0.008802594,0.0008010138,0.000292567,0.00004420329,0.0007902195,0.0004586106,0.008807297],"genre_scores_gemma":[0.9881064,0.003686191,0.002657512,0.0001235404,0.00005017507,0.00001660191,0.0006354391,0.00002732137,0.004696873],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001600422,"threshold_uncertainty_score":0.005353928,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2079671323","doi":"10.1016/j.chom.2013.08.015","title":"The Interferon-Inducible MxB Protein Inhibits HIV-1 Infection","year":2013,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":327,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research","keywords":"Cypa; Biology; Cyclophilin A; Virology; Capsid; Interferon; SAMHD1; Infectivity; Antiviral protein; Virus; Peptidylprolyl isomerase; Viral replication; Cyclophilin; Molecular biology; RNA; Genetics; Gene; Reverse transcriptase; Isomerase","authors":[{"name":"Zhenlong Liu","is_ca":true},{"name":"Qinghua Pan","is_ca":true},{"name":"Shilei Ding","is_ca":true},{"name":"Jin Qian","is_ca":true},{"name":"Fengwen Xu","is_ca":false},{"name":"Jinming Zhou","is_ca":false},{"name":"Shan Cen","is_ca":false},{"name":"Fei Guo","is_ca":false},{"name":"Chen Liang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0087956312849027,"gpt":0.2214547456638154,"spread":0.2126591143789127,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002341064,0.0003243638,0.0003118103,0.0002835639,0.0003042,0.0004709593,0.0002306597,0.0003137172,0.001537129],"category_scores_gemma":[0.0002088656,0.000157043,0.0002781161,0.0001110856,0.0002826061,0.0001799422,0.0001893657,0.001171763,0.0004550369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003180414,"about_ca_system_score_gemma":0.0003619758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004245371,"about_ca_topic_score_gemma":0.0008998853,"domain_scores_codex":[0.9998629,0.00003098293,0.000006396006,0.0000102179,0.0000334506,0.00005588912],"domain_scores_gemma":[0.999934,0.00001710409,0.00001020459,0.00001028133,0.000005207442,0.00002321193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001479015,0.0007407249,0.0005233064,0.00009037919,0.00002674941,0.00005270087,0.0000401914,0.0007048526,0.9731225,0.000855606,0.001216757,0.02114713],"study_design_scores_gemma":[0.0006637178,0.004709376,0.01085946,0.00003749546,0.00006034618,0.0003503686,0.00007160453,0.004093673,0.9659236,0.0004974284,0.01271531,0.00001767414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867615,0.004677375,0.001406812,0.0004695189,0.0002228647,0.00005254762,0.000240254,0.0002118853,0.005957155],"genre_scores_gemma":[0.9936314,0.001596687,0.0007224552,0.00007211861,0.00005390324,0.00003222103,0.0003241569,0.00001835759,0.003548699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001537129,"threshold_uncertainty_score":0.005142272,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}