{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":303,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":303,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"e2f569863c48","filters":{"topic":"Infections and bacterial resistance"}},"results":[{"id":"W2096618073","doi":"10.1086/320183","title":"Emerging Importance of Multidrug‐Resistant<i>Acinetobacter</i>Species and<i>Stenotrophomonas maltophilia</i>as Pathogens in Seriously Ill Patients: Geographic Patterns, Epidemiological Features, and Trends in the SENTRY Antimicrobial Surveillance Program (1997–1999)","year":2001,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":438,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Stenotrophomonas maltophilia; Acinetobacter; Imipenem; Microbiology; Antibiotic resistance; Antimicrobial; Drug resistance; Trimethoprim; Multiple drug resistance; Acinetobacter baumannii; Sulfamethoxazole; Medicine; Antibiotics; Biology; Pseudomonas aeruginosa; Bacteria","authors":[{"name":"Ana Cristina Gales","is_ca":false},{"name":"Robert N. Jones","is_ca":false},{"name":"Kevin R. Forward","is_ca":true},{"name":"Jenniffer Linares","is_ca":false},{"name":"Hélio S. Sader","is_ca":false},{"name":"J. Verhoef","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01085640148740581,"gpt":0.2917698491956179,"spread":0.2809134477082121,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004755085,0.0002993623,0.0005380398,0.0001149362,0.0001190595,0.00004740635,0.0001572398,0.000243943,0.00001308328],"category_scores_gemma":[0.0008718967,0.0002214982,0.0002163496,0.0003572695,0.0004100989,0.00001711057,0.0001257988,0.0002573755,5.42631e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001743137,"about_ca_system_score_gemma":0.00002718921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002105035,"about_ca_topic_score_gemma":0.00304955,"domain_scores_codex":[0.9974566,0.0005443672,0.000814331,0.0006407868,0.0001272906,0.0004165856],"domain_scores_gemma":[0.99886,0.0002052721,0.0002994138,0.0003679903,0.0001462808,0.0001210554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003615996,0.0009877398,0.9873199,0.00004910443,0.00003553557,0.0000436555,0.00002102005,0.000008351512,0.002868966,0.00001873793,0.0002582207,0.00802718],"study_design_scores_gemma":[0.001490098,0.0007801867,0.9932035,0.00005649603,0.00002621121,0.00002349988,0.00004275937,0.000008445093,0.00005532198,0.00003409236,0.00402165,0.0002577252],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973769,0.001321209,0.000004740579,0.0002443808,0.0001972507,0.0003959879,0.0003448346,0.00002772859,0.00008696349],"genre_scores_gemma":[0.9888011,0.009546233,0.00002098621,0.0008501888,0.0002022395,0.00006050538,0.0004711859,0.00002018276,0.00002737164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008575799,"threshold_uncertainty_score":0.9032432,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2009485877","doi":"10.1016/s0011-2240(03)00020-8","title":"Microbial contamination of embryos and semen during long term banking in liquid nitrogen","year":2003,"lang":"en","type":"article","venue":"Cryobiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":298,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada; Biotechnology Research Institute; Canadian Food Inspection Agency","funders":"","keywords":"Contamination; Semen; Biology; Liquid nitrogen; Cryopreservation; Microbiology; Stenotrophomonas maltophilia; Germplasm; Bacteria; Embryo; Chemistry; Botany; Pseudomonas aeruginosa; Ecology","authors":[{"name":"A. Bielański","is_ca":true},{"name":"Hélène Bergeron","is_ca":true},{"name":"Peter C. K. Lau","is_ca":true},{"name":"John Devenish","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004105697555131179,"gpt":0.2174959942813903,"spread":0.2133902967262591,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001047617,0.00006991407,0.0001074087,0.00004428136,0.00003584179,0.00000468186,0.00003763015,0.0001151783,0.0000228719],"category_scores_gemma":[0.00004892279,0.00006999786,0.00002381742,0.00004020447,0.00006496114,0.000002703469,0.00002850646,0.00003852268,7.506383e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001230815,"about_ca_system_score_gemma":0.00002448415,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008285884,"about_ca_topic_score_gemma":0.0001397622,"domain_scores_codex":[0.9994749,0.00006758027,0.0001473296,0.0001620329,0.00001466653,0.0001334501],"domain_scores_gemma":[0.9997936,0.000006906137,0.00005781206,0.00009181514,0.00003467676,0.00001519337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001030104,0.00002061311,0.0763697,0.00002062886,0.00001173748,0.000001724009,0.00002087636,8.239386e-7,0.9230494,0.0002253627,0.00000405212,0.0001720905],"study_design_scores_gemma":[0.0006355959,0.0001950978,0.1152542,0.00001595519,0.000005926967,0.00003307865,0.00001386605,4.392328e-7,0.8828084,0.0000432106,0.0009068953,0.00008731432],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988006,0.0002905015,0.0002174214,0.000007011519,0.0001051121,0.00009530102,0.000005923765,0.000002849026,0.0004752803],"genre_scores_gemma":[0.9995944,0.00009305189,0.0001336265,0.00002078483,0.00004722787,0.000008167849,0.00003162673,0.00000630765,0.000064796],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04024098,"threshold_uncertainty_score":0.285443,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2043615432","doi":"10.3390/ijms9081489","title":"Aflatoxin B1 Degradation by Stenotrophomonas Maltophilia and Other Microbes Selected Using Coumarin Medium","year":2008,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":191,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Natural Science Foundation of China","keywords":"Stenotrophomonas maltophilia; Aflatoxin; Coumarin; Stenotrophomonas; Microbiology; Food science; Degradation (telecommunications); Chemistry; Biology; Pseudomonas; Bacteria; Pseudomonas aeruginosa; Organic chemistry","authors":[{"name":"Shu Guan","is_ca":false},{"name":"Cheng Ji","is_ca":false},{"name":"Ting Zhou","is_ca":true},{"name":"Junxia Li","is_ca":false},{"name":"Qiugang Ma","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01219266345613976,"gpt":0.2606160414284507,"spread":0.248423377972311,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001848177,0.00008108014,0.00008541676,0.00008078928,0.0001049839,0.00005034173,0.0002198316,0.0000488951,0.00001458127],"category_scores_gemma":[0.00007232781,0.00006789927,0.00004453807,0.0001052906,0.0002108984,0.00001712166,0.00004413154,0.00005538017,6.234116e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002293738,"about_ca_system_score_gemma":0.0001663593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004521573,"about_ca_topic_score_gemma":0.00001238586,"domain_scores_codex":[0.999216,0.00004379744,0.0002099947,0.0001382482,0.0002865092,0.0001054979],"domain_scores_gemma":[0.9993663,0.000008009822,0.0001907968,0.00005079278,0.0003392702,0.00004482366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004759049,0.00003110258,0.006111006,0.000001213984,0.00004282717,0.00001872916,0.00002267382,0.00008503672,0.9931095,0.0000374134,0.000223426,0.0002695415],"study_design_scores_gemma":[0.0004636676,0.0002416147,0.007059909,0.00002514013,0.00001230864,0.001021049,0.00003449083,0.00008604189,0.9808895,0.00006783562,0.009971632,0.0001268277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935737,0.0007549907,0.005027936,0.0001581956,0.0003240095,0.00003456558,0.00001097343,0.000002083464,0.0001135886],"genre_scores_gemma":[0.9964163,0.000246063,0.002897958,0.0001987203,0.0001305082,6.281283e-7,0.000004801876,0.000006366112,0.00009861741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01221996,"threshold_uncertainty_score":0.2768852,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119490092","doi":"10.1128/aac.44.2.287-293.2000","title":"Multiple Antibiotic Resistance in <i>Stenotrophomonas maltophilia</i> : Involvement of a Multidrug Efflux System","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Cystic Fibrosis Foundation","keywords":"Efflux; Microbiology; Stenotrophomonas maltophilia; Multiple drug resistance; Pseudomonas aeruginosa; Biology; Tetracycline; Bacterial outer membrane; Antibiotics; Chloramphenicol; Bacteria; Escherichia coli; Biochemistry; Gene; Genetics","authors":[{"name":"Li Zhang","is_ca":true},{"name":"Xian-Zhi Li","is_ca":true},{"name":"Keith Poole","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004950289235802477,"gpt":0.2066592209597372,"spread":0.2017089317239347,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009198848,0.0001605279,0.0002143008,0.00003609346,0.00006736315,0.00001904862,0.0001041916,0.000101645,0.00003435063],"category_scores_gemma":[0.000004675425,0.0001494835,0.00007048379,0.0001014161,0.00008167294,0.000006101802,0.0000220936,0.00005120323,0.000004278335],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002140657,"about_ca_system_score_gemma":0.00002416568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001779521,"about_ca_topic_score_gemma":0.0003012795,"domain_scores_codex":[0.9990823,0.00003559669,0.0002804784,0.0003120044,0.00007252928,0.0002170899],"domain_scores_gemma":[0.9996136,0.000006130741,0.00007798769,0.0002245699,0.00003651318,0.00004121583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006543571,0.0002966904,0.05470973,0.0002565836,0.00005251865,0.000006338103,0.0001987845,0.00002087122,0.9397658,0.00003059794,0.001728929,0.002278871],"study_design_scores_gemma":[0.005161016,0.0002152774,0.2080146,0.0004265057,0.00001869197,0.00001182874,0.00006147718,0.0000828464,0.6498384,0.000006985582,0.1357016,0.000460689],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985385,0.00008954023,0.00002207715,0.0001267076,0.00008673619,0.0002456046,0.00003866985,0.000009355472,0.0008428017],"genre_scores_gemma":[0.9961124,0.001550327,0.0005152452,0.0005848003,0.00008673339,0.000004482039,0.00003843446,0.00002173435,0.00108585],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2899272,"threshold_uncertainty_score":0.6095762,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2144124312","doi":"10.1164/rccm.201009-1392oc","title":"<i>Stenotrophomonas maltophilia</i> in Cystic Fibrosis: Serologic Response and Effect on Lung Disease","year":2010,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":168,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Toronto; St. Michael's Hospital; Institute for Clinical Evaluative Sciences; SickKids Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Stenotrophomonas maltophilia; Medicine; Cystic fibrosis; Immunology; Serology; Internal medicine; Cohort; Exacerbation; Respiratory disease; Antibody; Gastroenterology; Lung; Pseudomonas aeruginosa; Biology; Bacteria","authors":[{"name":"Valerie Waters","is_ca":true},{"name":"Yvonne Yau","is_ca":true},{"name":"Sudha Prasad","is_ca":true},{"name":"Annie Lu","is_ca":true},{"name":"Eshetu G. Atenafu","is_ca":true},{"name":"Ian Crandall","is_ca":false},{"name":"Stephanie Tom","is_ca":true},{"name":"Elizabeth Tullis","is_ca":true},{"name":"Félix Ratjen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004042134512945681,"gpt":0.2705561782995041,"spread":0.2665140437865584,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005284869,0.0001266083,0.0002520752,0.00008061168,0.00006682306,0.00001221735,0.00006697331,0.000054435,0.00001166949],"category_scores_gemma":[0.001901394,0.00008805878,0.00004129108,0.00008892512,0.0007424618,0.00000621249,0.00002640543,0.000261458,3.160804e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001079315,"about_ca_system_score_gemma":0.00006010073,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004092851,"about_ca_topic_score_gemma":0.000007778096,"domain_scores_codex":[0.9989879,0.0003062006,0.0002335376,0.0001811302,0.0001283214,0.0001628922],"domain_scores_gemma":[0.9991553,0.0002664436,0.00007426803,0.0001406623,0.0001189273,0.0002443563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01720642,0.00005652798,0.1116461,0.0001431612,0.00001732322,0.0003410088,0.00008902169,0.000003141643,0.8498471,0.0002200386,0.0001111248,0.02031901],"study_design_scores_gemma":[0.003608969,0.05238452,0.8923333,0.0005301959,0.0002054866,0.0002681639,0.0007175644,0.000006596483,0.02083948,0.0001256874,0.02856012,0.0004199795],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961835,0.002844055,0.00002407571,0.0006257505,0.0002016384,0.00006618518,0.000008282543,0.000002468997,0.0000440068],"genre_scores_gemma":[0.9983286,0.00006826559,0.00004989945,0.001157367,0.0003725197,0.000007455419,0.000001422927,0.000009212551,0.000005238283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8290076,"threshold_uncertainty_score":0.3590933,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2100796737","doi":"10.1128/aac.46.2.333-343.2002","title":"SmeC, an Outer Membrane Multidrug Efflux Protein of <i>Stenotrophomonas maltophilia</i>","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":144,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Cystic Fibrosis Foundation","keywords":"Efflux; Stenotrophomonas maltophilia; Operon; Mutant; Biology; Multiple drug resistance; Gene; Microbiology; Pseudomonas aeruginosa; Genetics; Bacteria; Drug resistance","authors":[{"name":"Xian-Zhi Li","is_ca":true},{"name":"Li Zhang","is_ca":true},{"name":"Keith Poole","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00911294526112994,"gpt":0.2190526745658667,"spread":0.2099397293047368,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005361685,0.000159923,0.0001714594,0.00002607912,0.00008565818,0.00002732847,0.0001103034,0.0001160131,0.0002096666],"category_scores_gemma":[0.000004794003,0.0001407005,0.00007654442,0.00005333484,0.00009179383,0.000009505034,0.00003031927,0.00005163883,0.00000635702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005336507,"about_ca_system_score_gemma":0.000008027875,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000412743,"about_ca_topic_score_gemma":0.00001244806,"domain_scores_codex":[0.9992272,0.00002962585,0.000194444,0.0002887534,0.00006716099,0.0001928527],"domain_scores_gemma":[0.999553,0.000002085329,0.00008426689,0.0002467098,0.00005436827,0.00005959794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001002151,0.0002436021,0.001109369,0.00003801868,0.00003957042,0.000002138644,0.00008225552,0.000002281542,0.992912,0.00001566675,0.002396133,0.003058773],"study_design_scores_gemma":[0.001268813,0.0002524539,0.004312003,0.00002688641,0.000009550727,0.0000144965,0.00000902109,0.00004608863,0.9038357,0.000005630154,0.09001707,0.0002023006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986717,0.00003155188,0.00007487493,0.0003469319,0.000101503,0.0002262566,0.0000332906,0.00001031476,0.0005036098],"genre_scores_gemma":[0.9943624,0.0008445575,0.0006743699,0.001442364,0.0002131092,0.000007501803,0.00003772199,0.00002718158,0.002390788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08907629,"threshold_uncertainty_score":0.5737601,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2077538385","doi":"10.1007/s00281-007-0083-2","title":"The Nodosome: Nod1 and Nod2 control bacterial infections and inflammation","year":2007,"lang":"en","type":"review","venue":"Seminars in Immunopathology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"NOD1; NOD2; Nod; Proinflammatory cytokine; Immunology; Immune system; Pattern recognition receptor; Biology; Inflammation; Peptidoglycan; Innate immune system; Effector; Microbiology; Bacteria; Gene; Biochemistry; Genetics","authors":[{"name":"Ivan Tattoli","is_ca":true},{"name":"Leonardo H. Travassos","is_ca":true},{"name":"Letícia A. M. Carneiro","is_ca":true},{"name":"João G. Magalhães","is_ca":true},{"name":"Stephen E. Girardin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008820705914843512,"gpt":0.2866338195117044,"spread":0.2778131135968608,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007210546,0.0002908014,0.0005547737,0.0001337264,0.0002691702,0.00007506071,0.000134232,0.0005830872,0.000006593149],"category_scores_gemma":[0.0002961945,0.0002230323,0.0001001321,0.0001385731,0.000352207,0.000006665062,0.0001403284,0.0002955587,0.000007701122],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004015341,"about_ca_system_score_gemma":0.0001003286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009503599,"about_ca_topic_score_gemma":0.0001216766,"domain_scores_codex":[0.9984618,0.0002814527,0.0005103259,0.0003740476,0.00005602404,0.0003162819],"domain_scores_gemma":[0.999164,0.0001361886,0.0002501989,0.0003572622,0.0000546535,0.00003764259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009901226,0.00002824417,0.0001347813,0.0005644064,0.00005617808,0.00001575102,0.0000258792,1.630231e-7,0.01889367,0.0001797341,0.00006518607,0.979937],"study_design_scores_gemma":[0.0004360713,0.0002064824,0.0003680176,0.0008139941,0.00009850584,0.0005861663,0.00001121526,4.482559e-7,0.0002028203,0.00002710906,0.9970164,0.0002328116],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.06013884,0.9380285,0.00005768784,0.00002089839,0.0009484344,0.0004873317,0.00003088123,0.000008684284,0.0002788006],"genre_scores_gemma":[0.003853394,0.9950768,0.00004098085,0.00001481249,0.0004231571,0.0001233815,0.0001199593,0.00003272973,0.0003147704],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9969512,"threshold_uncertainty_score":0.9094995,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069958355","doi":"10.1016/j.carres.2003.08.010","title":"Biosynthesis and assembly of Group 1 capsular polysaccharides in Escherichia coli and related extracellular polysaccharides in other bacteria","year":2003,"lang":"en","type":"review","venue":"Carbohydrate Research","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Escherichia coli; Polysaccharide; Bacteria; Virulence; Chemistry; Microbiology; Extracellular; Bacterial capsule; Organism; Biochemistry; Extracellular polymeric substance; Biofilm; Biology; Gene; Genetics","authors":[{"name":"Chris Whitfield","is_ca":true},{"name":"Anne Paiment","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04085770940374193,"gpt":0.3319594828104436,"spread":0.2911017734067016,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001866124,0.0003983748,0.001060655,0.0006469424,0.00008502117,0.00009262149,0.0002425984,0.0007771961,0.00004769363],"category_scores_gemma":[0.0003147913,0.0003614278,0.0001471514,0.0009293382,0.0003372882,0.00001448466,0.0001902087,0.0005359704,0.000003787766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008568207,"about_ca_system_score_gemma":0.0002954313,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006565467,"about_ca_topic_score_gemma":0.0003410016,"domain_scores_codex":[0.9965913,0.001029508,0.0007714226,0.0007721988,0.0002287411,0.0006068685],"domain_scores_gemma":[0.9989014,0.0001265429,0.0002159284,0.0005097447,0.0001145253,0.000131889],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003856557,0.00009725009,0.0001042702,0.002215769,0.0001009896,0.00003458054,0.00003149862,2.42676e-7,0.9770505,0.0003095286,0.00001102465,0.02000571],"study_design_scores_gemma":[0.00206848,0.001021425,0.000831165,0.01538866,0.0004186426,0.0001028782,0.0002932098,0.00005430757,0.2403991,0.0004334032,0.7364258,0.00256292],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.4297672,0.569537,0.000002059163,0.000007207352,0.00006947058,0.0004565198,0.00003783193,0.000003813829,0.0001189004],"genre_scores_gemma":[0.1011292,0.8982168,0.00009562832,0.000004333857,0.00005148392,0.00009536387,0.00003905374,0.00007855723,0.0002896364],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7366515,"threshold_uncertainty_score":0.9998838,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1968699566","doi":"10.1016/j.jcf.2012.12.006","title":"Chronic Stenotrophomonas maltophilia infection and mortality or lung transplantation in cystic fibrosis patients","year":2013,"lang":"en","type":"article","venue":"Journal of Cystic Fibrosis","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital; University of Toronto; University Health Network; SickKids Foundation; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"","keywords":"Medicine; Stenotrophomonas maltophilia; Cystic fibrosis; Lung transplantation; Internal medicine; Burkholderia cepacia complex; Hazard ratio; Proportional hazards model; Transplantation; Gastroenterology; Pseudomonas aeruginosa; Burkholderia; Confidence interval","authors":[{"name":"Valerie Waters","is_ca":true},{"name":"Eshetu G. Atenafu","is_ca":true},{"name":"Annie Lu","is_ca":true},{"name":"Yvonne Yau","is_ca":true},{"name":"Elizabeth Tullis","is_ca":true},{"name":"Félix Ratjen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005271098141721177,"gpt":0.2364052862298257,"spread":0.2311341880881045,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001437239,0.0001309372,0.0001908605,0.00008856655,0.00006444233,0.00005354983,0.00005885486,0.0001184979,0.00007664976],"category_scores_gemma":[0.0001062171,0.0001036364,0.00007449031,0.0001215485,0.00004367901,0.00003464201,0.00001756302,0.0001015271,0.000003156721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008640131,"about_ca_system_score_gemma":0.00008582902,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001712999,"about_ca_topic_score_gemma":0.0001561331,"domain_scores_codex":[0.9990247,0.00007948252,0.000425307,0.0001521682,0.0001452423,0.0001730421],"domain_scores_gemma":[0.9993667,0.00003224736,0.0002356905,0.0001108271,0.0001823585,0.00007219493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007006214,0.0001273569,0.2921561,0.0004179428,0.00007324717,0.000007739277,0.00005984847,0.0002649857,0.7022315,0.00000995522,0.0002298066,0.003720935],"study_design_scores_gemma":[0.00118952,0.001144201,0.9798752,0.0001704233,0.00007913155,0.00003856228,0.000006064661,0.000124402,0.01654469,0.00005308586,0.000636344,0.0001383945],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971439,0.0003308611,0.001949159,0.0000212957,0.0003016924,0.0001882604,0.00002442875,0.000003258695,0.00003715505],"genre_scores_gemma":[0.9982086,0.0005996955,0.0007904102,0.00001674206,0.0002596195,0.00001925633,0.00002810878,0.00001299117,0.00006452121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6877191,"threshold_uncertainty_score":0.4226168,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2103575880","doi":"10.1128/aac.45.12.3497-3503.2001","title":"SmeDEF Multidrug Efflux Pump Contributes to Intrinsic Multidrug Resistance in <i>Stenotrophomonas maltophilia</i>","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Cystic Fibrosis Foundation","keywords":"Stenotrophomonas maltophilia; Efflux; Multiple drug resistance; Microbiology; Gram-negative bacterial infections; Drug resistance; Biology; Antibiotics; Pseudomonas aeruginosa; Bacteria; Genetics","authors":[{"name":"Li Zhang","is_ca":true},{"name":"Xian-Zhi Li","is_ca":true},{"name":"Keith Poole","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005647099704666491,"gpt":0.2330745222243493,"spread":0.2274274225196828,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001286298,0.0002441739,0.0002629754,0.0000802745,0.000141667,0.00007085029,0.0001632696,0.0001518825,0.00003636222],"category_scores_gemma":[0.00003233528,0.0002320532,0.00008083885,0.0002191914,0.00008536552,0.00001019564,0.00007195006,0.0001001448,0.00001605193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003771128,"about_ca_system_score_gemma":0.00003432801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000127722,"about_ca_topic_score_gemma":0.0008076035,"domain_scores_codex":[0.998692,0.00004293066,0.000296042,0.0004915916,0.00008091243,0.0003964814],"domain_scores_gemma":[0.9994591,0.0000125534,0.00007247874,0.0002863221,0.00007554453,0.00009404292],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001037673,0.0002788686,0.04996207,0.00003432822,0.00006349041,0.00002101696,0.0001367913,0.00001195226,0.9310908,0.00008347288,0.01335217,0.0039274],"study_design_scores_gemma":[0.002909194,0.00009139832,0.2130236,0.00008553749,0.000009458515,0.00001199509,0.0000222533,0.000007155972,0.2078701,0.00004107437,0.5755679,0.0003603326],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995984,0.0001081405,0.0002333211,0.00234232,0.0002608249,0.0003942369,0.00003436745,0.0000174968,0.0006252909],"genre_scores_gemma":[0.9862194,0.002877417,0.0005538945,0.007200574,0.0002256992,0.00002301907,0.00005575835,0.00003576671,0.002808438],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7232207,"threshold_uncertainty_score":0.9462854,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2074708517","doi":"10.1016/j.jvs.2006.07.021","title":"Bacterial diversity in aortic aneurysms determined by 16S ribosomal RNA gene analysis","year":2006,"lang":"en","type":"article","venue":"Journal of Vascular Surgery","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Faculty of Dentistry, University of Toronto","keywords":"Medicine; Gene; 16S ribosomal RNA; Ribosomal RNA; Genetics; Biology","authors":[{"name":"Rafael Marques da Silva","is_ca":false},{"name":"Dominique A. Caugant","is_ca":false},{"name":"Emenike Ribs K. Eribe","is_ca":false},{"name":"Per Snorre Lingaas","is_ca":false},{"name":"Odd Geiran","is_ca":false},{"name":"Leif Tronstad","is_ca":false},{"name":"Ingar Olsen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006503880288559439,"gpt":0.2068045434365124,"spread":0.200300663147953,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005381887,0.0001298815,0.0003641722,0.0002300327,0.0000897684,0.0000371628,0.0001211767,0.0001200188,0.00005326695],"category_scores_gemma":[0.0001026165,0.0001198043,0.0006442538,0.0003156158,0.00003817773,0.00001397005,0.0001065485,0.0000881226,0.000001450437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003751738,"about_ca_system_score_gemma":0.00007255569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001509811,"about_ca_topic_score_gemma":0.0001301292,"domain_scores_codex":[0.9987656,0.0001254462,0.000513293,0.0001707132,0.0002059317,0.0002189593],"domain_scores_gemma":[0.9992494,0.00002855084,0.0003235631,0.0001922377,0.0001415543,0.00006471061],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001788769,0.0001526584,0.1515053,0.000007789055,0.0003104254,0.00006903646,0.000004754935,0.0001213485,0.8458461,7.82026e-7,0.001240857,0.0005620543],"study_design_scores_gemma":[0.001100536,0.0001590919,0.602965,0.00002078003,0.0006312937,0.00007998895,0.000009794295,0.0000414163,0.3857183,0.00003950293,0.008847525,0.0003867834],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978526,0.0004223313,0.001170309,0.00002304746,0.0004223839,0.00003938293,0.00001527528,0.000002800003,0.00005187051],"genre_scores_gemma":[0.9989658,0.0002335691,0.0001451375,0.00002836811,0.0004836083,0.000001143251,0.00007052984,0.000009834414,0.00006198561],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4601279,"threshold_uncertainty_score":0.4885477,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1967535648","doi":"10.1056/nejm200108023450504","title":"The Pseudomonas Hot-Foot Syndrome","year":2001,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta Hospital; University of Calgary; University of Alberta","funders":"","keywords":"Medicine; Foot (prosody); Outbreak; Dermatology; Pediatrics; Virology","authors":[{"name":"Loretta Fiorillo","is_ca":true},{"name":"Marc Zucker","is_ca":true},{"name":"Douglas Sawyer","is_ca":true},{"name":"Andrew N. Lin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008381507519305297,"gpt":0.2483330986268766,"spread":0.2399515911075713,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004862415,0.00007251496,0.0001235361,0.00002740103,0.00009769561,0.00001214769,0.0001318248,0.0000437482,0.00005434904],"category_scores_gemma":[0.000241963,0.00003768155,0.00004836494,0.0000667483,0.00007651641,0.000002925817,0.00001512879,0.0001052613,0.000002675098],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008678219,"about_ca_system_score_gemma":0.00007074997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001615185,"about_ca_topic_score_gemma":0.00006600466,"domain_scores_codex":[0.9993872,0.00004618921,0.0002304989,0.00006527619,0.0001442503,0.000126601],"domain_scores_gemma":[0.9994777,0.00003774412,0.0001431306,0.0001321205,0.0001116519,0.00009758333],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002426086,0.00005871956,0.004564019,0.000009354219,0.0002119721,0.0004160485,0.0001062208,0.00003019754,0.7378554,0.0004937307,0.05452189,0.1993064],"study_design_scores_gemma":[0.00641242,0.001238681,0.00779373,0.00004147607,0.00002701403,0.004963751,0.00003078303,0.000001208145,0.003165934,0.0003206789,0.9759479,0.00005638774],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889253,0.002954871,0.001202546,0.003438637,0.0009791041,0.00003806047,6.24271e-7,0.000002098089,0.002458801],"genre_scores_gemma":[0.9895423,0.00348731,0.00009015802,0.0002056904,0.003831138,5.203443e-7,0.000002415131,0.000007138587,0.002833328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9214261,"threshold_uncertainty_score":0.1536609,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2080635769","doi":"10.3201/eid0605.000506","title":"Atypical <i>Chryseobacterium meningosepticum</i> and Meningitis and Sepsis in Newborns and the Immunocompromised, Taiwan","year":2000,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Children's Hospital","funders":"Chang Gung University; National Science Council","keywords":"Chryseobacterium; Microbiology; Aeromonas salmonicida; Biology; Neonatal sepsis; Meningitis; 16S ribosomal RNA; RAPD; Sepsis; Virology; Gene; Bacteria; Medicine; Immunology; Genetics; Population; Genetic diversity; Pediatrics","authors":[{"name":"Cheng-Hsun Chiu","is_ca":false},{"name":"Michael Waddingdon","is_ca":false},{"name":"Wu‐Shiun Hsieh","is_ca":false},{"name":"David E. Greenberg","is_ca":true},{"name":"Paul C. Schreckenberger","is_ca":false},{"name":"A M Carnahan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.002189288655824128,"gpt":0.2086227522844266,"spread":0.2064334636286025,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009671231,0.000155174,0.0001680928,0.00003670309,0.0002330923,0.0001022137,0.0000470841,0.000064659,0.00007457288],"category_scores_gemma":[0.00005169746,0.0001229804,0.00004446138,0.00008566135,0.000268976,0.00001238635,0.00006860453,0.00007772472,0.000001654876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000110624,"about_ca_system_score_gemma":0.00002166611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001295444,"about_ca_topic_score_gemma":0.0001352308,"domain_scores_codex":[0.9991896,0.00009110865,0.0001665076,0.0002884578,0.00005765186,0.000206728],"domain_scores_gemma":[0.9996724,0.00002744736,0.00003881654,0.0001596423,0.00002272266,0.00007900165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005455265,0.0005222124,0.5029423,0.0002434851,0.0005399606,0.00004174983,0.001524369,0.0001658294,0.3230704,0.001850986,0.00196382,0.1616796],"study_design_scores_gemma":[0.01258504,0.0005954048,0.8421366,0.0001511944,0.0002451783,0.0002529045,0.0002434812,0.000368653,0.004695348,0.001007763,0.1367473,0.0009710803],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962545,0.001929877,0.00003082458,0.0002448807,0.00006645862,0.0002076397,0.00001847935,0.0000236689,0.001223654],"genre_scores_gemma":[0.9976934,0.001602371,0.00004090526,0.0001593027,0.0001270185,0.00005778262,0.00001951912,0.00001660637,0.0002831537],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3391943,"threshold_uncertainty_score":0.5014994,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3215645663","doi":"10.1128/aac.01990-21","title":"<i>In Vitro</i> Susceptibility of Gram-Negative Pathogens to Cefiderocol in Five Consecutive Annual Multinational SIDERO-WT Surveillance Studies, 2014 to 2019","year":2021,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Stenotrophomonas maltophilia; Acinetobacter baumannii; Pseudomonas aeruginosa; Burkholderia; Burkholderia cepacia complex; Broth microdilution","authors":[],"retraction":null,"screen_n_in":null,"score":{"opus":0.007008621343854265,"gpt":0.2773883812422138,"spread":0.2703797598983595,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001678416,0.0001553903,0.0002762474,0.00005094709,0.00004829074,0.00001400374,0.00007212562,0.00008895343,0.00002589361],"category_scores_gemma":[0.0001252245,0.0001550019,0.00005785448,0.0001801745,0.00007713394,0.000008204153,0.00007964251,0.00005996901,0.000003450114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003570861,"about_ca_system_score_gemma":0.00008340427,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002199856,"about_ca_topic_score_gemma":0.002201057,"domain_scores_codex":[0.9989079,0.00009808352,0.0002771413,0.0004237658,0.00007514621,0.0002179316],"domain_scores_gemma":[0.9993545,0.00004137089,0.00007443168,0.0001674618,0.0003084662,0.00005379073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006279125,0.000235488,0.01190362,0.00002533737,0.00005160686,0.000009239736,0.0008009791,0.00003563726,0.9652642,0.00001349918,0.02040435,0.000628117],"study_design_scores_gemma":[0.001659694,0.0001616935,0.1155573,0.00003937093,0.000003373143,0.000006229626,0.0004103969,0.00000413489,0.8691982,0.00004744379,0.01268337,0.0002287471],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971825,0.00006021599,0.00006302217,0.001444666,0.0001288649,0.000421507,0.0006482529,0.000002885798,0.00004802581],"genre_scores_gemma":[0.9933357,0.0005740935,0.001018244,0.004427339,0.00006717623,0.00002134068,0.00007580748,0.00001312724,0.0004671596],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1036537,"threshold_uncertainty_score":0.6320794,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2128606135","doi":"10.1128/iai.71.6.3068-3075.2003","title":"Role of Phosphoglucomutase of <i>Stenotrophomonas</i> <i>maltophilia</i> in Lipopolysaccharide Biosynthesis, Virulence, and Antibiotic Resistance","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of Calgary; Health Sciences Centre; Queen's University","funders":"Cystic Fibrosis Foundation","keywords":"Stenotrophomonas maltophilia; Biology; Microbiology; Phosphoglucomutase; Virulence; Mutant; Pseudomonas aeruginosa; Bacteria; Gene; Enzyme; Biochemistry; Genetics","authors":[{"name":"Geoffrey A. McKay","is_ca":true},{"name":"Donald E. Woods","is_ca":true},{"name":"Kelly L. MacDonald","is_ca":true},{"name":"Keith Poole","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003593766355611712,"gpt":0.2045258065444408,"spread":0.2009320401888291,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002406786,0.0001056453,0.0001754141,0.00006647086,0.00007074606,0.00000950673,0.00004024701,0.00009827119,0.000009553567],"category_scores_gemma":[0.0001565984,0.000104418,0.00004003133,0.0001292503,0.0001626801,0.00001027573,0.00003296759,0.00008204929,4.224969e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008451176,"about_ca_system_score_gemma":0.00003535055,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005805381,"about_ca_topic_score_gemma":0.0004620879,"domain_scores_codex":[0.9993103,0.0001126551,0.0002411889,0.0001602971,0.00005604377,0.0001195186],"domain_scores_gemma":[0.9995466,0.00002265044,0.0001225196,0.0002073459,0.00006648578,0.00003437731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001087038,0.0001182106,0.04033247,0.00005887562,0.00001314395,3.00667e-7,0.00002739564,0.000002004433,0.957597,0.0008073343,0.000007649947,0.0009269029],"study_design_scores_gemma":[0.000349775,0.0001217804,0.08296816,0.00005650189,0.00001057506,0.000007750448,0.0000532737,0.000002009672,0.9113086,0.0001799016,0.004842527,0.00009918006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960846,0.001970859,0.00003377759,0.00000702738,0.00006886494,0.0000989688,0.00002045844,0.000004432381,0.001711031],"genre_scores_gemma":[0.9961545,0.003600301,0.0001301816,0.00002393811,0.00001128062,0.00000305277,0.000005663779,0.000007944944,0.00006308438],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04628845,"threshold_uncertainty_score":0.4258043,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2095048040","doi":"10.1016/j.diagmicrobio.2004.09.002","title":"Antibiotic combinations significantly more active than monotherapy in an in vitro infection model of Stenotrophomonas maltophilia","year":2005,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; St. Boniface Hospital","funders":"","keywords":"Stenotrophomonas maltophilia; Ciprofloxacin; Tobramycin; Antibiotics; Microbiology; Ceftazidime; Minimum inhibitory concentration; Sulfamethoxazole; Gentamicin; Trimethoprim; Pharmacodynamics; Antibacterial agent; Aminoglycoside; Biology; Medicine; Bacteria; Pseudomonas aeruginosa; Pharmacology; Pharmacokinetics","authors":[{"name":"Sheryl Zelenitsky","is_ca":true},{"name":"Harris Iacovides","is_ca":true},{"name":"Robert E. Ariano","is_ca":true},{"name":"G. K. M. Harding","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005882959171275475,"gpt":0.2360151182139653,"spread":0.2301321590426898,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000965771,0.0001680419,0.0002040762,0.0001668138,0.0000715108,0.00001169131,0.00006199269,0.000164688,0.000009340454],"category_scores_gemma":[0.0001744396,0.000171124,0.00005702297,0.0001376411,0.0001778157,0.00002245285,0.00003174877,0.00009416288,0.00000165846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004457024,"about_ca_system_score_gemma":0.00009466773,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001428308,"about_ca_topic_score_gemma":0.0008415775,"domain_scores_codex":[0.999033,0.000119492,0.0002568855,0.0003443723,0.00002675013,0.0002194982],"domain_scores_gemma":[0.999494,0.00005888995,0.00009577034,0.0001965494,0.00007357232,0.00008127864],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000523281,0.0009433404,0.1147554,0.00002405935,0.00001920001,0.000003161086,0.0001037783,0.003032444,0.879046,0.0001634387,0.00001225895,0.001373625],"study_design_scores_gemma":[0.003370558,0.0005942961,0.6252947,0.00005611846,0.00004349448,0.00001295619,0.00004594749,0.00210378,0.3675155,0.0003509579,0.0001966522,0.000415055],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987137,0.0002252932,0.0003007769,0.00007255666,0.00008167608,0.0003442089,0.00018543,0.00001166649,0.00006468753],"genre_scores_gemma":[0.9985684,0.0007840272,0.00005955761,0.0001522047,0.00005292893,0.00003908676,0.0003077035,0.00001586683,0.00002022063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5115305,"threshold_uncertainty_score":0.6978236,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2608308533","doi":"10.1128/jcm.02556-16","title":"Prevalence and Outcomes of Achromobacter Species Infections in Adults with Cystic Fibrosis: a North American Cohort Study","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"McMaster University; Population Health Research Institute; University of Calgary","funders":"","keywords":"Achromobacter; Interquartile range; Cystic fibrosis; Odds ratio; Medicine; Internal medicine; Sputum; Confidence interval; Sputum culture; Retrospective cohort study; Cohort; Epidemiology; Biology; Pathology; Tuberculosis","authors":[{"name":"Brett Edwards","is_ca":true},{"name":"Jasper Wong","is_ca":true},{"name":"Ranjani Somayaji","is_ca":true},{"name":"Barbara J. Waddell","is_ca":true},{"name":"Fiona Whelan","is_ca":true},{"name":"Douglas G. Storey","is_ca":true},{"name":"Harvey Rabin","is_ca":true},{"name":"Michael G. Surette","is_ca":true},{"name":"Michael D. Parkins","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01098182045804738,"gpt":0.3135702176253952,"spread":0.3025883971673478,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004527856,0.000103705,0.0005006505,0.00004612011,0.00006813953,0.0000179862,0.0001746613,0.00006664723,0.000006962782],"category_scores_gemma":[0.0007977245,0.00006933796,0.00009328326,0.00003717946,0.000524789,0.00001011803,0.00008447273,0.0001668119,5.529178e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007317684,"about_ca_system_score_gemma":0.00007625169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005088535,"about_ca_topic_score_gemma":0.002087781,"domain_scores_codex":[0.9988391,0.0001643964,0.0006563581,0.0001827913,0.0000333323,0.0001239553],"domain_scores_gemma":[0.9984115,0.0001026305,0.0009734696,0.0002756555,0.0001892369,0.00004749875],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007510874,0.0004654803,0.977312,0.00002005897,0.0001497692,0.000005322342,0.00001953625,0.000002314137,0.02083264,0.000001552838,0.00002298428,0.0004172723],"study_design_scores_gemma":[0.001331516,0.004549463,0.9927394,0.00005470697,0.00005965125,0.00006708124,0.00002915433,2.618097e-7,0.0005108678,0.000001565126,0.0005781061,0.00007825787],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994237,0.00004588676,0.00003535936,0.00005571893,0.000196,0.0001695838,0.00002818889,0.000001074701,0.00004453445],"genre_scores_gemma":[0.9990857,0.0004377034,0.0002406244,0.00002676982,0.0001264914,0.000004315328,0.000003265643,0.00000616143,0.0000689932],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02032177,"threshold_uncertainty_score":0.282752,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171901351","doi":"10.1093/jac/dkg148","title":"Role of the acetyltransferase AAC(6')-Iz modifying enzyme in aminoglycoside resistance in Stenotrophomonas maltophilia","year":2003,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Sisomicin; Tobramycin; Netilmicin; Aminoglycoside; Stenotrophomonas maltophilia; Microbiology; Biology; Amikacin; Antibiotics; Genetics; Bacteria; Gentamicin; Pseudomonas aeruginosa","authors":[{"name":"Xinzheng Li","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004346670194827675,"gpt":0.2100460196023857,"spread":0.205699349407558,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003095885,0.000138177,0.0002567311,0.00008354275,0.00004031897,0.00001608682,0.0002118385,0.0001253932,0.00001696174],"category_scores_gemma":[0.00005131605,0.0001081794,0.0001725267,0.0002238483,0.00007743967,0.00001151917,0.00001233874,0.000191005,3.782693e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004812667,"about_ca_system_score_gemma":0.0001558243,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002263161,"about_ca_topic_score_gemma":0.0003479712,"domain_scores_codex":[0.998909,0.0001126554,0.0005021332,0.000150123,0.0001174141,0.0002087],"domain_scores_gemma":[0.9993998,0.000012767,0.0002402771,0.0002118131,0.000103376,0.00003190106],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006078277,0.0001606701,0.004755054,0.00002215005,0.0000205453,0.00000508621,0.0001252215,0.0001635958,0.9937176,0.000100939,0.0001590737,0.0001622248],"study_design_scores_gemma":[0.001795897,0.00008355223,0.01427272,0.0001291378,0.000005724087,0.00003448728,0.00003584439,0.000001925196,0.9719484,0.0001146884,0.01146214,0.0001154859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998213,0.0006430244,0.0001407189,0.0002256859,0.0001663706,0.0001261226,0.00000796827,0.000001198869,0.0004758993],"genre_scores_gemma":[0.9974683,0.000997339,0.0009913363,0.0002658331,0.00008670345,0.000001323341,0.000001119491,0.00001913197,0.0001688927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02176921,"threshold_uncertainty_score":0.4411427,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2135039738","doi":"10.1093/jac/45.3.363","title":"Comparative activity of new quinolones against 326 clinical isolates of Stenotrophomonas maltophilia","year":2000,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Trovafloxacin; Sparfloxacin; Moxifloxacin; Stenotrophomonas maltophilia; Levofloxacin; Ciprofloxacin; Gatifloxacin; Microbiology; Antibiotics; Medicine; Ofloxacin; Antibacterial agent; Pseudomonas aeruginosa; Biology; Bacteria","authors":[{"name":"Karl Heinz Weiss","is_ca":true},{"name":"C Restieri","is_ca":false},{"name":"Emidio De Carolis","is_ca":false},{"name":"Michél Laverdière","is_ca":false},{"name":"Hélène Guay","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01942726021828716,"gpt":0.3043662405717829,"spread":0.2849389803534957,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001768881,0.0001294106,0.0004711014,0.0000416285,0.00003205516,0.000009901632,0.0001674504,0.0001476535,0.000103482],"category_scores_gemma":[0.00001514841,0.0001082398,0.0003095701,0.00008721489,0.0001528209,0.00001122562,0.00001376229,0.0001295893,0.000001915956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009859414,"about_ca_system_score_gemma":0.0001807165,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001910138,"about_ca_topic_score_gemma":0.000007041526,"domain_scores_codex":[0.9990242,0.00006914524,0.0005643481,0.0001307876,0.00007925033,0.0001323382],"domain_scores_gemma":[0.9989967,0.00001756054,0.0005560883,0.0001652557,0.0002056803,0.00005873857],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002192506,0.000344085,0.00142944,0.00001643563,0.0001820672,0.000001508805,0.00008048434,0.00005817386,0.9842648,0.000002227436,0.002989303,0.00843897],"study_design_scores_gemma":[0.001591578,0.0009422089,0.01778757,0.00005986583,0.00001949469,0.00002420592,0.00001062309,0.000005187234,0.9607376,0.00001054163,0.01870497,0.0001061514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988275,0.0001699926,0.0001931205,0.0002197168,0.0002100449,0.00007673508,0.0000157744,0.000001935869,0.0002851427],"genre_scores_gemma":[0.9942179,0.00350148,0.001223724,0.0001682288,0.0004355071,1.654571e-7,0.000003607841,0.00001221257,0.0004371562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02352719,"threshold_uncertainty_score":0.4413892,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2092060784","doi":"10.1016/j.jcf.2011.07.008","title":"Chronic Stenotrophomonas maltophilia infection and exacerbation outcomes in cystic fibrosis","year":2011,"lang":"en","type":"article","venue":"Journal of Cystic Fibrosis","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital; University of Toronto; University Health Network; SickKids Foundation; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"","keywords":"Medicine; Stenotrophomonas maltophilia; Exacerbation; Cystic fibrosis; Internal medicine; Burkholderia cepacia complex; Retrospective cohort study; Gastroenterology; Pseudomonas aeruginosa; Burkholderia","authors":[{"name":"Valerie Waters","is_ca":true},{"name":"Eshetu G. Atenafu","is_ca":true},{"name":"Juliana Salazar","is_ca":true},{"name":"Annie Lu","is_ca":true},{"name":"Yvonne Yau","is_ca":true},{"name":"Larissa Matukas","is_ca":true},{"name":"Elizabeth Tullis","is_ca":true},{"name":"Félix Ratjen","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009209945613618674,"gpt":0.2311103378379804,"spread":0.2219003922243617,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002243133,0.0001361944,0.0002243159,0.0001242009,0.00006029434,0.00002873599,0.00006989505,0.0001281999,0.00005801125],"category_scores_gemma":[0.0001696017,0.0001154424,0.00009865322,0.0001052199,0.00005413041,0.00002217261,0.00003708833,0.000109171,0.000004065285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007918623,"about_ca_system_score_gemma":0.00008735465,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009473258,"about_ca_topic_score_gemma":0.00009626601,"domain_scores_codex":[0.9990801,0.00007242642,0.0004041778,0.0001508914,0.0001203022,0.0001721084],"domain_scores_gemma":[0.9993826,0.00002797862,0.0002664425,0.0001394416,0.0001175893,0.00006590721],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005174385,0.000106505,0.1276052,0.0001024468,0.00006719754,0.000008986507,0.0000865531,0.00006956951,0.8676124,0.00008638324,0.0001001773,0.003637166],"study_design_scores_gemma":[0.001043892,0.001882675,0.9349738,0.0001304524,0.00007006587,0.00008960317,0.00001719623,0.00003734592,0.05724487,0.0002710846,0.004049602,0.0001893858],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956446,0.0008337914,0.002832714,0.00002952188,0.0003823752,0.0000971147,0.000009367601,0.000004150023,0.0001663476],"genre_scores_gemma":[0.9964762,0.0003498967,0.0026812,0.00001661012,0.0002590551,0.000009013093,0.000005752996,0.00001506823,0.0001871646],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8103675,"threshold_uncertainty_score":0.4707604,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2137949505","doi":"10.1093/jac/48.4.549","title":"Fluoroquinolone susceptibilities of efflux-mediated multidrug-resistant Pseudomonas aeruginosa, Stenotrophomonas maltophilia and Burkholderia cepacia","year":2001,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Stenotrophomonas maltophilia; Microbiology; Trovafloxacin; Pseudomonas aeruginosa; Efflux; Moxifloxacin; Burkholderia; Ciprofloxacin; Sparfloxacin; Multiple drug resistance; Antibacterial agent; Levofloxacin; Stenotrophomonas; Biology; Antibiotics; Ofloxacin; Pseudomonas; Bacteria","authors":[{"name":"Li Zhang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005621056619684048,"gpt":0.2206855464830659,"spread":0.2150644898633818,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002445834,0.0002301907,0.0004289209,0.000110043,0.00008565981,0.0000359286,0.0001801628,0.0001906892,0.00007383198],"category_scores_gemma":[0.00007096213,0.0002005586,0.0002055904,0.0001347667,0.0002619631,0.00001750151,0.00003935324,0.000140786,0.000001971155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003065432,"about_ca_system_score_gemma":0.0001149442,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004688926,"about_ca_topic_score_gemma":0.00003350562,"domain_scores_codex":[0.9986611,0.00006875308,0.0006055214,0.0002295952,0.0001585022,0.0002765252],"domain_scores_gemma":[0.9988114,0.00002762186,0.0004781814,0.0002427875,0.0003429602,0.00009699816],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001903667,0.0001956851,0.003068536,0.0000480885,0.0001314144,0.00001527591,0.0001100568,0.00001022137,0.9926055,0.00001550354,0.0013893,0.0005067606],"study_design_scores_gemma":[0.002827197,0.0009221844,0.01590407,0.00007900634,0.00003122895,0.0002570032,0.00008241463,0.000005908177,0.9545051,0.00001846246,0.02512724,0.0002401722],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983519,0.0004489349,0.0001927179,0.0003361178,0.0003169407,0.0001474251,0.00004332457,0.000006622267,0.0001559916],"genre_scores_gemma":[0.9926754,0.004591606,0.001604389,0.0002171834,0.0004265785,0.000001199482,0.00001955714,0.00003338422,0.0004307681],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03810038,"threshold_uncertainty_score":0.8178544,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2342456077","doi":"10.1099/ijsem.0.001122","title":"Lawsonella clevelandensis gen. nov., sp. nov., a new member of the suborder Corynebacterineae isolated from human abscesses","year":2016,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Biology; Muramic acid; 16S ribosomal RNA; Microbiology; Peptidoglycan; Chemotaxonomy; Bacteria; Galactose; Phylogenetic tree; Diamino acid; Fatty acid; Cell wall; Biochemistry; Taxonomy (biology); Gene; Genetics; Botany","authors":[{"name":"Melissa E. Bell","is_ca":false},{"name":"Kathryn Bernard","is_ca":true},{"name":"Susan M. Harrington","is_ca":false},{"name":"Nisha B. Patel","is_ca":false},{"name":"Trudy-Ann Tucker","is_ca":false},{"name":"Maureen G. Metcalfe","is_ca":false},{"name":"John R. McQuiston","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01129855976442981,"gpt":0.2434616439452171,"spread":0.2321630841807873,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001638971,0.0001219667,0.0002790927,0.0000582218,0.00005801322,0.00001398525,0.0002871738,0.0001278195,0.0001443828],"category_scores_gemma":[0.0001178648,0.00006673386,0.0001334787,0.00004349355,0.0001423609,0.00001315775,0.0001040348,0.00005767269,0.000005605264],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003749839,"about_ca_system_score_gemma":0.0001157202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007956722,"about_ca_topic_score_gemma":0.00008445574,"domain_scores_codex":[0.99892,0.000113099,0.000625962,0.0001409093,0.00008960619,0.0001104266],"domain_scores_gemma":[0.998601,0.00006095102,0.0006258197,0.0001586472,0.0005120231,0.00004154929],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001742523,0.00004297236,0.00580804,0.0001241756,0.0003762159,0.000003400828,0.00002926883,0.000004541197,0.99101,0.0001235106,0.002260277,0.00004338273],"study_design_scores_gemma":[0.01608199,0.002261315,0.3230891,0.021829,0.001056318,0.01285346,0.0005563296,0.00004660305,0.5391795,0.00428613,0.07695244,0.0018078],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948275,0.001087032,0.002348962,0.0004692643,0.0009464683,0.0001169074,0.0001219364,0.000002499133,0.00007944705],"genre_scores_gemma":[0.9980373,0.0002386923,0.0002606984,0.00007756327,0.0004033275,0.000002184809,0.00002141785,0.000009173314,0.0009496389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4518304,"threshold_uncertainty_score":0.2721328,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2116184273","doi":"10.1128/jcm.01947-10","title":"First Case of Invasive Human Infection Caused by Cupriavidus metallidurans","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de Santé Publique du Québec; Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal","funders":"Institut National de Santé Publique du Québec","keywords":"Microbiology; Virology; Biology","authors":[{"name":"Stéphanie Langevin","is_ca":true},{"name":"Jean Vincelette","is_ca":true},{"name":"Sadjia Békal","is_ca":true},{"name":"Christiane Gaudreau","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01956676853344096,"gpt":0.3432868488378248,"spread":0.3237200803043838,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007582381,0.000116611,0.0004108466,0.0000501774,0.00008225654,0.000009738312,0.0001262721,0.0004129751,0.0001018508],"category_scores_gemma":[0.0009581522,0.00009228267,0.0003381382,0.00005984047,0.0002613176,0.000006680072,0.00004452404,0.0003900561,0.00000345452],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006064156,"about_ca_system_score_gemma":0.00011618,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006350011,"about_ca_topic_score_gemma":0.002416791,"domain_scores_codex":[0.998489,0.0001580978,0.00101655,0.0001648971,0.00002453724,0.0001469426],"domain_scores_gemma":[0.9983799,0.0001416628,0.0008443688,0.000201825,0.0003503173,0.0000818651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001322452,0.0002205175,0.007904354,0.00001463379,0.0001576083,0.00003379877,0.000007959514,0.000003110191,0.9884073,0.00005242413,0.002767469,0.0002985652],"study_design_scores_gemma":[0.002331804,0.002540236,0.01009392,0.00002867918,0.0001501648,0.003389055,0.00001271729,6.19602e-7,0.726748,0.0001224563,0.2543755,0.0002068531],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997795,0.00008990709,0.0003024928,0.0001220235,0.00144549,0.0000748857,0.00004694096,0.000002353994,0.0001208461],"genre_scores_gemma":[0.9984899,0.0003005371,0.0002986129,0.0001088301,0.0006375998,0.000001454755,0.00002885583,0.00001103239,0.0001232231],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2616593,"threshold_uncertainty_score":0.3763178,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2604648886","doi":"10.1093/gbe/evx061","title":"A Pan-Genomic Approach to Understand the Basis of Host Adaptation in Achromobacter","year":2017,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec; Université Laval","funders":"Cystic Fibrosis Canada","keywords":"Achromobacter; Biology; Lineage (genetic); Phylogenetic tree; Horizontal gene transfer; Resistome; Phylogenetics; Genome; Host adaptation; Achromobacter xylosoxidans; Genetics; Evolutionary biology; Gene; Mobile genetic elements; Pseudomonas; Bacteria","authors":[{"name":"Julie Jeukens","is_ca":true},{"name":"Luca Freschi","is_ca":true},{"name":"Antony T. Vincent","is_ca":true},{"name":"Jean-Guillaume Emond-Rhéault","is_ca":true},{"name":"Irena Kukavica‐Ibrulj","is_ca":true},{"name":"Steve J. Charette","is_ca":true},{"name":"Roger C. Lévesque","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01691721608778819,"gpt":0.2456900446527056,"spread":0.2287728285649174,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001779795,0.00006493762,0.00008265462,0.0000250888,0.000194143,0.00001450649,0.0001028422,0.0001047223,0.00000248844],"category_scores_gemma":[0.0000419231,0.00004875142,0.00002467671,0.00002772161,0.0001355294,0.000004712571,0.00006478201,0.00003768307,0.000002012204],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002595144,"about_ca_system_score_gemma":0.00003185218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000167636,"about_ca_topic_score_gemma":0.0003363079,"domain_scores_codex":[0.9995388,0.00004653595,0.0001076448,0.0001709903,0.00001887119,0.0001171945],"domain_scores_gemma":[0.999643,0.000005346596,0.00007354082,0.0002300013,0.00002960705,0.00001854401],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000145352,0.00003120279,0.01942246,0.000009017158,0.00001903336,7.863103e-8,0.0001560946,0.00002221767,0.9773256,0.001925405,0.00001405377,0.0009295581],"study_design_scores_gemma":[0.000254813,0.0001388451,0.9937356,0.000004051232,0.000007575102,0.000003327481,0.0002203226,0.0000324522,0.003447349,0.000274958,0.001806552,0.00007417439],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908108,0.0003377089,0.007514238,0.000113971,0.00008905933,0.0001488443,0.00002426102,0.000001787043,0.0009593458],"genre_scores_gemma":[0.9993502,0.0001407357,0.0002549088,0.00002916879,0.00009329835,0.0000116518,0.00003563202,0.000004054507,0.00008028323],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9743131,"threshold_uncertainty_score":0.1988025,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2083047705","doi":"10.1128/aac.02215-12","title":"Biofilm Compared to Conventional Antimicrobial Susceptibility of Stenotrophomonas maltophilia Isolates from Cystic Fibrosis Patients","year":2013,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Stenotrophomonas maltophilia; Colistin; Cystic fibrosis; Microbiology; Antibiotics; Levofloxacin; Biofilm; Pseudomonas aeruginosa; Antimicrobial; Stenotrophomonas; Multiple drug resistance; Biology; Medicine; Bacteria; Pseudomonas; Internal medicine","authors":[{"name":"Kitty Wu","is_ca":true},{"name":"Yvonne Yau","is_ca":true},{"name":"Larissa Matukas","is_ca":true},{"name":"Valerie Waters","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005668743400615797,"gpt":0.2172148941951426,"spread":0.2115461507945268,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000454805,0.0001982554,0.0002463191,0.00003839664,0.0001066039,0.00005402697,0.0001390822,0.000124247,0.0004399307],"category_scores_gemma":[0.00001348987,0.0001840341,0.0001129531,0.00008409011,0.00009865197,0.00001220111,0.0000762249,0.00004947126,0.00002714507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001596244,"about_ca_system_score_gemma":0.00003043255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005991901,"about_ca_topic_score_gemma":0.00007042637,"domain_scores_codex":[0.9989414,0.00003893571,0.0003143206,0.0003963209,0.0000752091,0.0002337857],"domain_scores_gemma":[0.9993507,0.00001006224,0.0001198078,0.0002394582,0.0001899246,0.00009008504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003168263,0.0002855181,0.07691545,0.00002659214,0.00007141946,1.735015e-7,0.0000537634,0.000005956404,0.9073095,0.000003466786,0.01427563,0.0007357132],"study_design_scores_gemma":[0.001750777,0.0002659727,0.5885729,0.00004835675,0.00001851656,0.000001127696,0.0000146649,0.00002245363,0.3984903,0.00002514034,0.01052259,0.0002671498],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984923,0.000009966835,0.0001478831,0.0002641176,0.0002408678,0.000398567,0.0003942283,0.000009586003,0.00004245869],"genre_scores_gemma":[0.9962419,0.0001096581,0.001528875,0.001297802,0.0001394637,0.000009028555,0.000471384,0.00002281748,0.0001790651],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5116575,"threshold_uncertainty_score":0.7504694,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163339124","doi":"10.1016/j.mimet.2010.03.012","title":"A novel selective growth medium-PCR assay to isolate and detect Sphingomonas in environmental samples","year":2010,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Ministry of the Environment, Conservation and Parks; Plant Biotechnology Institute; University of Toronto; Hospital for Sick Children; Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada; Hospital for Sick Children; Inha University; Northern Ontario Heritage Fund Corporation; Advanced Foods and Materials Network","keywords":"Sphingomonas; Microbiology; Biology; Molecular biology; Chemistry; Chromatography; Bacteria; Genetics; Pseudomonas","authors":[{"name":"Mi-Sung Yim","is_ca":true},{"name":"Yvonne Yau","is_ca":true},{"name":"Anne Matlow","is_ca":true},{"name":"Jae-Seong So","is_ca":false},{"name":"Jitao Zou","is_ca":true},{"name":"Cecily A. Flemming","is_ca":true},{"name":"Heidi Schraft","is_ca":true},{"name":"Kam Tin Leung","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01247374402733426,"gpt":0.2949177133340096,"spread":0.2824439693066754,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001358469,0.000126982,0.0002264187,0.00006781254,0.00005089135,0.00002061865,0.0001300369,0.0002105738,0.00002232799],"category_scores_gemma":[0.0008900412,0.00008958182,0.0000834107,0.00007539854,0.00008807962,0.0000056062,0.00009592765,0.0003230351,0.000001008312],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000209942,"about_ca_system_score_gemma":0.00003090447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009473853,"about_ca_topic_score_gemma":0.00004319705,"domain_scores_codex":[0.999066,0.0002229815,0.0002908107,0.0001959338,0.0000385227,0.0001857736],"domain_scores_gemma":[0.9995102,0.0001243116,0.0001466546,0.00008315803,0.00004355469,0.00009208703],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002498938,0.00006715133,0.002408844,0.000002706617,0.00002491707,0.00000273002,0.00002278359,0.000001639754,0.9910303,0.00001512548,0.00003426354,0.006139602],"study_design_scores_gemma":[0.0004430708,0.0006997279,0.11338,0.00001028433,0.00001160573,0.000373711,0.00001872778,0.000001511482,0.869848,0.0002102916,0.01486944,0.0001336515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9502071,0.0001668114,0.0491025,0.0001286677,0.0002439703,0.00008348391,0.00001734387,0.000002092894,0.00004802248],"genre_scores_gemma":[0.758121,0.0001535258,0.2413455,0.0001707811,0.0001801552,0.000002567438,0.000002397012,0.000006691307,0.00001741285],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.192243,"threshold_uncertainty_score":0.3653041,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2106955254","doi":"10.1139/w09-045","title":"The investigation of nematocidal activity in<i>Stenotrophomonas maltophilia</i>G2 and characterization of a novel virulence serine protease","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Stenotrophomonas maltophilia; Serine protease; Proteases; Biology; Serine; Microbiology; Protease; Virulence; Stenotrophomonas; Biochemistry; Nematode; Virulence factor; Extracellular; Bursaphelenchus xylophilus; Bacteria; Enzyme; 16S ribosomal RNA","authors":[{"name":"Xiaowei Huang","is_ca":false},{"name":"Junwei Liu","is_ca":false},{"name":"Junmei Ding","is_ca":false},{"name":"Qiusheng He","is_ca":false},{"name":"Rui Xiong","is_ca":false},{"name":"Ke‐Qin Zhang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005939320636079798,"gpt":0.1983467019247505,"spread":0.1924073812886707,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001711786,0.00006112719,0.0001263366,0.00005872036,0.00004495675,0.000006358488,0.00007991873,0.00008082652,0.000002192026],"category_scores_gemma":[0.00005132816,0.00004804552,0.00003078638,0.00007045857,0.0001541789,0.000007372487,0.000007354451,0.0000680962,6.423289e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001792957,"about_ca_system_score_gemma":0.0003589862,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002151346,"about_ca_topic_score_gemma":0.00234744,"domain_scores_codex":[0.9995211,0.00004833183,0.0002277713,0.00007444188,0.00001645877,0.0001118646],"domain_scores_gemma":[0.9994566,0.000007376646,0.0002730399,0.00008239102,0.0001135844,0.00006698174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001090948,0.00001048731,0.004193685,0.00001144735,0.000007994999,0.000001958694,0.00002772264,0.000004102544,0.9947277,0.00005513753,0.000006907987,0.0008438145],"study_design_scores_gemma":[0.0003994704,0.0004086677,0.1912674,0.00004119216,0.000005956241,0.0001308397,0.00000903201,0.000003833417,0.8062705,0.00002669587,0.00138336,0.00005297719],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991815,0.0001271391,0.0001395105,0.0003064723,0.00008556956,0.0001050561,0.00004337821,3.384746e-7,0.0000110296],"genre_scores_gemma":[0.9996305,0.0001010447,0.0001202077,0.00006610223,0.00004780649,0.000001240228,0.0000108494,0.000003106565,0.0000191314],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1884571,"threshold_uncertainty_score":0.195924,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2059082488","doi":"10.1016/j.jcf.2013.05.009","title":"Factors influencing the acquisition of Stenotrophomonas maltophilia infection in cystic fibrosis patients","year":2013,"lang":"en","type":"article","venue":"Journal of Cystic Fibrosis","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. Michael's Hospital; Institute for Clinical Evaluative Sciences; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Stenotrophomonas maltophilia; Cystic fibrosis; Medicine; Pseudomonas aeruginosa; Cohort; Antibiotics; Pseudomonas infection; Burkholderia; Incidence (geometry); Risk factor; Internal medicine; Pediatrics; Immunology; Microbiology; Bacteria; Biology","authors":[{"name":"Sanja Stanojevic","is_ca":true},{"name":"Félix Ratjen","is_ca":true},{"name":"Derek Stephens","is_ca":true},{"name":"Annie Lu","is_ca":true},{"name":"Yvonne Yau","is_ca":true},{"name":"Elizabeth Tullis","is_ca":true},{"name":"Valerie Waters","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006069023437489319,"gpt":0.2180275546792957,"spread":0.2119585312418063,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017317,0.0001331393,0.0002080749,0.0001061154,0.00007317946,0.00003832717,0.0001185991,0.0001144772,0.00006134996],"category_scores_gemma":[0.0002372576,0.0000887917,0.0001478854,0.0001811824,0.00005905886,0.00003016159,0.00004197923,0.0001158382,0.00000349853],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006561669,"about_ca_system_score_gemma":0.00005786538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002279887,"about_ca_topic_score_gemma":0.00002365827,"domain_scores_codex":[0.9988889,0.0001023692,0.0005297584,0.0001156831,0.0001956307,0.000167694],"domain_scores_gemma":[0.998876,0.00005880864,0.0004658443,0.0001670678,0.0003823974,0.00004983165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001678474,0.00009699968,0.2366532,0.00005759409,0.00003611639,4.283157e-7,0.0001064559,0.0003013733,0.7617923,0.00001050605,0.0001809443,0.0005962824],"study_design_scores_gemma":[0.0004529212,0.0007841751,0.9217338,0.0001273676,0.0000352497,0.000004600447,0.00005045156,0.00001704537,0.07612602,0.0001042535,0.0004694236,0.00009468797],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998746,0.0001306814,0.0005384864,0.00002451499,0.0003450053,0.0001545767,0.00001536031,0.0000022809,0.00004313901],"genre_scores_gemma":[0.9993332,0.00006185035,0.0003722685,0.000025134,0.0001437029,0.000009793242,0.00001365983,0.00001262878,0.00002776783],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6856663,"threshold_uncertainty_score":0.3620821,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063985072","doi":"10.3109/00365548.2012.732240","title":"Antimicrobial susceptibility and combination testing of invasive<i>Stenotrophomonas maltophilia</i>isolates","year":2012,"lang":"en","type":"article","venue":"Scandinavian Journal of Infectious Diseases","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"University of California, Los Angeles; Calgary Laboratory Services","keywords":"Tigecycline; Stenotrophomonas maltophilia; Colistin; Microbiology; Broth microdilution; Etest; Antibiotics; Ticarcillin; Antimicrobial; Medicine; Biology; Levofloxacin; Antibiotic resistance; Imipenem; Pseudomonas aeruginosa; Minimum inhibitory concentration; Bacteria","authors":[{"name":"Deirdre L. Church","is_ca":true},{"name":"Tracie Lloyd","is_ca":true},{"name":"Gisele Peirano","is_ca":true},{"name":"Johann Pitout","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007480992135163022,"gpt":0.2271307434927238,"spread":0.2196497513575608,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001730787,0.0001129963,0.0001898573,0.0000747327,0.0001058718,0.000023503,0.00006272076,0.00006217556,0.00001275421],"category_scores_gemma":[0.0004928415,0.00009972796,0.00009847026,0.0001181589,0.0001143487,0.00002816586,0.00004028021,0.00006842747,6.988353e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002835428,"about_ca_system_score_gemma":0.00007889943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001979992,"about_ca_topic_score_gemma":0.00001614005,"domain_scores_codex":[0.9992622,0.00007641947,0.0003065494,0.0001028264,0.00007652275,0.0001755335],"domain_scores_gemma":[0.9990312,0.00004295582,0.0003521171,0.0001115628,0.0003322472,0.0001298732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009027583,0.0002009022,0.6027283,0.00005468208,0.00003124771,0.000001183834,0.00002024712,0.000007455021,0.3960445,0.00002290069,0.00006416701,0.000734132],"study_design_scores_gemma":[0.00110527,0.00107047,0.8475609,0.0001516804,0.0001016618,0.0002759059,0.00004348267,0.000001827257,0.1491454,0.0001880191,0.0001913978,0.0001639361],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982555,0.0009604517,0.0001191334,0.00001508213,0.0003547213,0.00008519242,0.00002805332,0.000004824698,0.0001770351],"genre_scores_gemma":[0.9992542,0.0002350069,0.0001271089,0.00002464547,0.0003221932,0.000001449639,0.000009220193,0.00001124077,0.00001492668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2468991,"threshold_uncertainty_score":0.4066788,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2031861259","doi":"10.1111/j.1574-695x.2006.00059.x","title":"Importance of complement 3 and mannose receptors in phagocytosis of<i>Paracoccidioides brasiliensis</i>conidia by<i>Nramp1</i>congenic macrophages lines","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Biology; Phagocytosis; Mannose; Microbiology; Complement receptor; Mannose receptor; Paracoccidioides brasiliensis; Paracoccidioides; Congenic; Complement (music); Macrophage; Complement system; Virology; Immunology; Antibody; Genetics; Complementation; In vitro; Biochemistry; Phenotype; Gene","authors":[{"name":"María del P. Jiménez","is_ca":false},{"name":"Ángela Restrepo","is_ca":false},{"name":"Danuta Radzioch","is_ca":true},{"name":"Luz Elena Cano","is_ca":false},{"name":"Luis F. García","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003763965642443691,"gpt":0.2300071456572258,"spread":0.2262431800147821,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003343781,0.0002252663,0.0005209206,0.00009398669,0.00005326516,0.000004645437,0.0002428965,0.0004328438,0.0001571519],"category_scores_gemma":[0.0001626137,0.000205921,0.00009733947,0.0001446438,0.001024625,0.000005369024,0.0001809052,0.0001829963,0.000003471155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002181879,"about_ca_system_score_gemma":0.000102382,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004220239,"about_ca_topic_score_gemma":0.001055256,"domain_scores_codex":[0.9981607,0.0001977448,0.0007534191,0.0004420704,0.00005744774,0.00038866],"domain_scores_gemma":[0.9991779,0.00008141814,0.0002984049,0.0002968163,0.00009982269,0.0000456377],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001852739,0.0002008896,0.04601134,0.00002982653,0.0001035164,0.000005253784,0.00001541179,0.000001215777,0.9490364,0.00009058503,0.002228524,0.002091806],"study_design_scores_gemma":[0.001409856,0.0005008578,0.03506294,0.00004293614,0.00002611518,0.0000984915,0.00004087017,0.000001547197,0.9246532,0.00006639183,0.03788653,0.0002102917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984286,0.01454569,0.0000818656,0.0002106472,0.000441046,0.0001985257,0.0001430768,0.000009271306,0.00008389666],"genre_scores_gemma":[0.9961821,0.002600187,0.0002806249,0.0001718498,0.00009650075,0.00002597402,0.0004326941,0.0000174097,0.0001926383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03565801,"threshold_uncertainty_score":0.8397213,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3081732748","doi":"10.3390/ijms21176338","title":"Isolation and Characterization of the Novel Bacteriophage AXL3 against Stenotrophomonas maltophilia","year":2020,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Directorate for Biological Sciences; Alberta Innovates; University of Alberta; Universities Space Research Association; Natural Sciences and Engineering Research Council of Canada; Alberta Health Services","keywords":"Stenotrophomonas maltophilia; Isolation (microbiology); Stenotrophomonas; Bacteriophage; Microbiology; Gram-negative bacterial infections; Biology; Pseudomonas aeruginosa; Bacteria; Pseudomonas; Antibiotics; Escherichia coli; Genetics; Gene","authors":[{"name":"Jaclyn G. McCutcheon","is_ca":true},{"name":"Andrea Lin","is_ca":true},{"name":"Jonathan J. Dennis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00913119187845618,"gpt":0.2340533288940697,"spread":0.2249221370156135,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001347431,0.0000573179,0.00007173909,0.00003223583,0.00004772073,0.00004435689,0.0002336648,0.0000326878,0.00000580087],"category_scores_gemma":[0.00008328415,0.00004067162,0.00006503765,0.00009197263,0.0001239056,0.00001929739,0.00007669573,0.00004521738,2.906453e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007355581,"about_ca_system_score_gemma":0.00007769113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001553532,"about_ca_topic_score_gemma":8.815755e-7,"domain_scores_codex":[0.9993498,0.00002811854,0.0002199388,0.0001003559,0.0002437741,0.00005800425],"domain_scores_gemma":[0.9993638,0.000004529722,0.0002996428,0.0000506734,0.0002485751,0.00003275576],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000494716,0.00001723464,0.001431037,0.000003181973,0.00002353236,0.000002513038,0.00004147886,0.00007746508,0.9972862,0.0001618939,0.00000388439,0.0009020771],"study_design_scores_gemma":[0.0003934794,0.0002558883,0.08968592,0.00003474903,0.0000109581,0.00005033218,0.00003057694,0.0002742604,0.9063534,0.0000264796,0.002809959,0.00007404645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880844,0.00006628785,0.010178,0.001093634,0.0003990548,0.00004233231,0.0000147373,0.000001027096,0.0001205695],"genre_scores_gemma":[0.99843,0.0001124042,0.0007433509,0.0005124071,0.0001794348,5.346886e-7,0.000004647053,0.000003677873,0.00001355227],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09093288,"threshold_uncertainty_score":0.1658541,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2559323994","doi":"10.1016/j.rmcr.2016.11.014","title":"Ralstonia mannitolilytica in cystic fibrosis: A new predictor of worse outcomes","year":2016,"lang":"en","type":"article","venue":"Respiratory Medicine Case Reports","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre Hospitalier de l’Université de Montréal; University of British Columbia; Institut universitaire de cardiologie et de pneumologie de Québec; Université de Montréal; Montreal Clinical Research Institute; Hôtel-Dieu de Montréal","funders":"","keywords":"Medicine; Cystic fibrosis; Fibrosis; Internal medicine","authors":[{"name":"I. Coman","is_ca":true},{"name":"Lara Bilodeau","is_ca":true},{"name":"Annick Lavoie","is_ca":true},{"name":"Maïté Carricart","is_ca":true},{"name":"François Tremblay","is_ca":true},{"name":"James E. A. Zlosnik","is_ca":true},{"name":"Yves Berthiaume","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0139255897589491,"gpt":0.2825475660909687,"spread":0.2686219763320196,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003960125,0.0001623605,0.0003073802,0.0001145523,0.00003206862,0.000003735342,0.00004576003,0.0001324646,0.0001246318],"category_scores_gemma":[0.001119535,0.0001012958,0.00007556346,0.0001320883,0.0001467139,0.00000654855,0.00004444315,0.00005259162,0.000002743789],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003604844,"about_ca_system_score_gemma":0.000242982,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009610008,"about_ca_topic_score_gemma":0.0001529963,"domain_scores_codex":[0.9985943,0.00006863876,0.0006228575,0.0003261001,0.0001647336,0.0002234102],"domain_scores_gemma":[0.998919,0.00004590083,0.0002618571,0.0005261065,0.00009643701,0.0001507091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002139564,0.00008241113,0.122453,0.00008616386,0.00005929792,0.01177908,0.00004497051,0.000003269557,0.853035,0.00006281941,0.007899805,0.004280233],"study_design_scores_gemma":[0.005038909,0.002268203,0.1663015,0.001729901,0.0001846682,0.01459335,0.0001203315,0.000002025111,0.2265186,0.0003963828,0.5820944,0.0007516716],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972438,0.001088033,0.0003147762,0.0001750549,0.0004104682,0.0002053198,0.00000949241,0.00001320661,0.0005398077],"genre_scores_gemma":[0.9981637,0.00004879127,0.0000873176,0.0001324592,0.0004361421,0.00003000767,0.00000456216,0.00001905937,0.001077936],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6265164,"threshold_uncertainty_score":0.4130724,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2297326425","doi":"10.1111/1758-2229.12384","title":"<i>Stenotrophomonas maltophilia</i> biofilm reduction by <i>Bdellovibrio exovorus</i>","year":2016,"lang":"en","type":"article","venue":"Environmental Microbiology Reports","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Stenotrophomonas maltophilia; Biofilm; Bdellovibrio; Microbiology; Ciprofloxacin; Antibiotics; Biology; Bacteria; Chemistry; Pseudomonas aeruginosa","authors":[{"name":"Ryan M. Chanyi","is_ca":true},{"name":"Susan F. Koval","is_ca":true},{"name":"Joanna S. Brooke","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00195109182064472,"gpt":0.1658934036771433,"spread":0.1639423118564986,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001102514,0.000216614,0.0001666077,0.00002500808,0.0001267343,0.00001070911,0.0000891969,0.0002498612,0.0002218526],"category_scores_gemma":[0.00001265679,0.0001635482,0.0001168903,0.00003350609,0.0003829546,0.00001100781,0.0001122601,0.00006123052,0.00008724358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006758481,"about_ca_system_score_gemma":0.00002142378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001043467,"about_ca_topic_score_gemma":0.000003369255,"domain_scores_codex":[0.9986157,0.00005443702,0.0003352748,0.0006195792,0.00004463291,0.0003303955],"domain_scores_gemma":[0.9992653,0.000004305338,0.0001918654,0.0004544829,0.000007896718,0.00007615655],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006317541,0.00009172141,0.00404291,0.000002215992,0.000033879,0.00002521905,0.000003233266,7.359343e-7,0.97627,0.000002198505,0.01816003,0.001304712],"study_design_scores_gemma":[0.0001818947,0.0001407369,0.0007452459,0.000005579786,0.000008889202,0.001376894,0.00000474567,1.865909e-8,0.6165978,0.00001483124,0.3807637,0.0001596457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996937,0.0007492329,0.0002972425,0.0002106264,0.0009626888,0.0001851771,0.0001384437,0.00002157347,0.0004980044],"genre_scores_gemma":[0.987081,0.0007335891,0.0001695548,0.0001726607,0.0002745138,0.00002833838,0.0005566599,0.00003121319,0.01095247],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3626037,"threshold_uncertainty_score":0.6669302,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2115545690","doi":"10.1111/j.1542-4758.2010.00524.x","title":"Catheter-related bacteremia caused by Comamonas testosteroni in a hemodialysis patient","year":2011,"lang":"en","type":"article","venue":"Hemodialysis International","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Comamonas testosteroni; Bacteremia; Hemodialysis; Medicine; Gram-negative bacterial infections; Human pathogen; Catheter; Microbiology; Intensive care medicine; Surgery; Bacteria; Biology; Antibiotics","authors":[{"name":"William Nseir","is_ca":false},{"name":"Julnar Khateeb","is_ca":false},{"name":"Mohammad AWAWDEH","is_ca":false},{"name":"Murad Ghali","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009341923316070543,"gpt":0.2178448067104359,"spread":0.2085028833943653,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001446121,0.0001981062,0.0002035236,0.0001542301,0.00005972735,0.00003841785,0.0002585227,0.000178067,0.0006046479],"category_scores_gemma":[0.00008004595,0.0001979156,0.0001811871,0.0001755951,0.00006845579,0.00001453216,0.0001088831,0.0001121748,0.00004917808],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001006775,"about_ca_system_score_gemma":0.00004936376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002168927,"about_ca_topic_score_gemma":0.0003677534,"domain_scores_codex":[0.9986086,0.00008217833,0.0004281834,0.0004339311,0.0001982578,0.0002487765],"domain_scores_gemma":[0.9992853,0.00001472641,0.0001631276,0.0003326726,0.000130319,0.00007388388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003170198,0.001116254,0.08701935,0.000008263732,0.0004872333,0.00002049836,0.0007217003,0.00003612069,0.8949777,0.0001864605,0.003535656,0.01157374],"study_design_scores_gemma":[0.004060003,0.000759773,0.09014037,0.00006630951,0.0001715217,0.00003941935,0.0001679949,0.000711199,0.7823377,0.0005053869,0.119731,0.001309253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899824,0.00007315424,0.0005462237,0.00006756914,0.0004274701,0.0001326708,0.00008725231,0.00001798884,0.008665252],"genre_scores_gemma":[0.9977976,0.00005494195,0.0003437366,0.0001813888,0.00008728355,0.0000597367,0.0005962282,0.00002398339,0.0008550953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1161954,"threshold_uncertainty_score":0.8070765,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996723116","doi":"10.1093/jac/dkh550","title":"A specific peptide inhibitor of the class B metallo-β-lactamase L-1 from Stenotrophomonas maltophilia identified using phage display","year":2005,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"","keywords":"Uncompetitive inhibitor; Peptide; Stenotrophomonas maltophilia; Biopanning; Phage display; Biochemistry; Non-competitive inhibition; Peptide library; Active site; Chemistry; Peptide sequence; Cyclic peptide; Enzyme; Biology; Bacteria; Pseudomonas aeruginosa; Gene","authors":[{"name":"François Sanschagrin","is_ca":true},{"name":"Roger C. Lévesque","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008188769160746458,"gpt":0.2306229982071387,"spread":0.2224342290463922,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001861013,0.0001709171,0.0002842062,0.0000492368,0.00009594778,0.00004903891,0.0002773223,0.0001266278,0.00008713912],"category_scores_gemma":[0.00002471794,0.0001224174,0.000385028,0.0001155349,0.0001213822,0.00002033227,0.00004612273,0.0001588429,0.00000240799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004814366,"about_ca_system_score_gemma":0.0001106932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001830095,"about_ca_topic_score_gemma":0.00002213958,"domain_scores_codex":[0.9988722,0.00007068391,0.0005290117,0.000176261,0.0001706319,0.0001812211],"domain_scores_gemma":[0.998867,0.00001481356,0.0005887354,0.0002861674,0.0001900909,0.00005315203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006471211,0.0001744768,0.0004326027,0.000008905823,0.0001308825,0.000004268104,0.00004784958,0.00009766155,0.9952248,0.000006729181,0.002791537,0.000433149],"study_design_scores_gemma":[0.00139175,0.00008612796,0.002994931,0.00006481315,0.00003843656,0.00005650792,0.00001311445,0.00001387174,0.9406323,0.000007345371,0.05457404,0.0001267989],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978233,0.0002754322,0.0005684487,0.0003826181,0.0006970797,0.0001118116,0.00005167112,0.000002369588,0.00008729642],"genre_scores_gemma":[0.9949204,0.000477452,0.002245064,0.000374505,0.001602958,4.072503e-7,0.00000744261,0.00002906153,0.0003427178],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05459255,"threshold_uncertainty_score":0.4992038,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2260976033","doi":"10.1371/journal.pone.0148534","title":"Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University; University of Alberta; University of Calgary","funders":"","keywords":"Cystic fibrosis; Medicine; Microbiology; Internal medicine; Biology","authors":[{"name":"Alya Heirali","is_ca":true},{"name":"Suzanne McKeon","is_ca":true},{"name":"Swathi Purighalla","is_ca":true},{"name":"Douglas G. Storey","is_ca":true},{"name":"Laura Rossi","is_ca":true},{"name":"Geoffrey Costilhes","is_ca":true},{"name":"Steven J. Drews","is_ca":true},{"name":"Harvey Rabin","is_ca":true},{"name":"Michael G. Surette","is_ca":true},{"name":"Michael D. Parkins","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005392592026487543,"gpt":0.1782189951306089,"spread":0.1728264031041213,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000850642,0.00006654911,0.0001147993,0.00001213863,0.00005418487,0.000004100944,0.0000612584,0.00005118478,0.00001456015],"category_scores_gemma":[0.00002907868,0.0000288922,0.00003193515,0.00004685063,0.0001592579,0.000003693562,0.00005542432,0.0000302097,1.77328e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002761623,"about_ca_system_score_gemma":0.00005744177,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001082549,"about_ca_topic_score_gemma":0.00003454801,"domain_scores_codex":[0.9995452,0.00004902149,0.0001208298,0.00009727925,0.0001160145,0.000071672],"domain_scores_gemma":[0.9994963,0.00002545344,0.0002261961,0.0001906075,0.00004923614,0.00001215893],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000211796,0.0002977029,0.2830372,0.00001720358,0.0001564077,9.633238e-9,0.000009738171,0.00000440698,0.7163969,0.00002651059,0.000008152609,0.00002459082],"study_design_scores_gemma":[0.0004357926,0.000327125,0.2780287,0.0001623059,0.0000815769,6.056091e-7,0.000006080025,6.534415e-7,0.720713,0.000009660745,0.0001918726,0.00004269102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989766,0.00001929086,0.0003694778,0.00007087748,0.00002596245,0.0001920217,0.0001745364,0.000001294751,0.000169876],"genre_scores_gemma":[0.9994797,0.00006461101,0.0002568069,0.000008674002,0.00001780486,0.00001284057,0.000003726009,0.000005358938,0.000150547],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005008589,"threshold_uncertainty_score":0.117819,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2406556093","doi":"10.1139/cjm-2015-0800","title":"Six cases during 2012–2015 and literature review of <i>Chryseobacterium indologenes</i> infections in pediatric patients","year":2016,"lang":"en","type":"review","venue":"Canadian Journal of Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Bacteremia; Medicine; Ciprofloxacin; Cellulitis; Chryseobacterium; Antibiotics; Internal medicine; Intensive care medicine; Pediatrics; Surgery; Microbiology; Bacteria; Biology","authors":[{"name":"Kübra Aykaç","is_ca":false},{"name":"Yasemin Özsürekçi","is_ca":false},{"name":"Özlem Tuncer","is_ca":false},{"name":"Banu Sancak","is_ca":false},{"name":"Ali Bülent Cengiz","is_ca":false},{"name":"Ateş Kara","is_ca":false},{"name":"Mehmet Ceyhan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006867964735443874,"gpt":0.2467197651621278,"spread":0.239851800426684,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002300768,0.0002527449,0.0009025573,0.0004341683,0.00005280975,0.00001326616,0.000175609,0.0004733765,0.00003598423],"category_scores_gemma":[0.0003392774,0.0001854401,0.0002524901,0.0002293423,0.0001053321,0.00001019962,0.0000397269,0.0002445545,0.000002644358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008229678,"about_ca_system_score_gemma":0.001147816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004247122,"about_ca_topic_score_gemma":0.003221336,"domain_scores_codex":[0.9984458,0.0002661806,0.0007663608,0.000217116,0.00002349824,0.0002810081],"domain_scores_gemma":[0.9985252,0.00004056377,0.0007284572,0.0001941072,0.000332426,0.0001792438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003257305,0.0006753526,0.06798243,0.4446167,0.001836114,0.001964185,0.0001438463,8.819483e-7,0.07602751,0.00006236469,0.07013758,0.3362273],"study_design_scores_gemma":[0.0003329384,0.0002746334,0.0005313542,0.02716697,0.000153679,0.002830554,7.193942e-7,3.422986e-10,0.0001174025,0.000001021289,0.9683899,0.0002008442],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04726398,0.9510656,0.000001109946,0.00002071357,0.0006958177,0.0002168488,0.0007106542,7.624837e-7,0.00002454059],"genre_scores_gemma":[0.002113327,0.9970666,0.00001541336,0.00005265053,0.0004343552,0.000007691723,0.0002058379,0.00002200274,0.0000821181],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8982523,"threshold_uncertainty_score":0.7562029,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2177048806","doi":"10.3389/fmicb.2015.01373","title":"Phenotypic Heterogeneity Affects Stenotrophomonas maltophilia K279a Colony Morphotypes and β-Lactamase Expression","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Queen's University; Deutsche Forschungsgemeinschaft; Deutscher Akademischer Austauschdienst","keywords":"Stenotrophomonas maltophilia; Biology; Phenotype; Gene; Microbiology; Antibiotics; Population; Gene expression; Bacteria; Stenotrophomonas; Genetics; Pseudomonas aeruginosa; 16S ribosomal RNA","authors":[{"name":"Ebrahim M. Abda","is_ca":false},{"name":"Dagmar Krysciak","is_ca":false},{"name":"Ines Krohn-Molt","is_ca":false},{"name":"Uwe Mamat","is_ca":false},{"name":"Christel Schmeisser","is_ca":false},{"name":"Konrad U. Förstner","is_ca":false},{"name":"Ulrich E. Schaible","is_ca":false},{"name":"Thomas A. Kohl","is_ca":false},{"name":"Stefan Nieman","is_ca":false},{"name":"Wolfgang R. Streit","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007434982634744027,"gpt":0.2197002162392386,"spread":0.2122652336044946,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000174886,0.0001696784,0.0002243861,0.00006783615,0.00006167289,0.00001623516,0.0001216731,0.0002612362,0.000007188838],"category_scores_gemma":[0.00006885464,0.0001558261,0.00004284055,0.00007390278,0.0001718265,0.000005920072,0.0001226514,0.0001033318,0.00000551314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004534415,"about_ca_system_score_gemma":0.00006345701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002106581,"about_ca_topic_score_gemma":0.00008875111,"domain_scores_codex":[0.998975,0.0001564836,0.0001545455,0.0003931862,0.00002884321,0.0002919801],"domain_scores_gemma":[0.999539,0.00000725457,0.00007186514,0.0002417769,0.00004734789,0.00009277254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004971719,0.00005154531,0.03166791,0.0000136496,0.00001867642,0.00001011897,0.0000259234,0.00001514762,0.9538504,0.000009556702,0.01341152,0.000428327],"study_design_scores_gemma":[0.001917981,0.0006655402,0.01340358,0.0000282604,0.00001694576,0.00008387519,0.00008045077,0.00001849764,0.8665794,0.0001488457,0.1166892,0.0003673796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944943,0.002379596,0.001511986,0.00004994505,0.001125514,0.0002004891,0.00004307479,0.00001153627,0.0001835879],"genre_scores_gemma":[0.9943916,0.0002340184,0.004544054,0.0001630564,0.0001525836,0.00002299019,0.0001437834,0.00001767283,0.0003302213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1032777,"threshold_uncertainty_score":0.6354406,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2104552962","doi":"10.1128/jb.00722-12","title":"Genome Sequence of the Polychlorinated-Biphenyl Degrader Pseudomonas pseudoalcaligenes KF707","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Canadian Food Inspection Agency","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dell’Istruzione, dell’Università e della Ricerca","keywords":"Biology; Polychlorinated biphenyl; Whole genome sequencing; Pseudomonas; Biphenyl; Chemotaxis; Microbiology; Genome; Bacteria; Genetics; Ecology; Gene; Chemistry; Organic chemistry","authors":[{"name":"Tania Triscari-Barberi","is_ca":false},{"name":"Domenico Simone","is_ca":false},{"name":"Francesco Maria Calabrese","is_ca":false},{"name":"Marcella Attimonelli","is_ca":false},{"name":"Kristen R. Hahn","is_ca":true},{"name":"Kingsley K. Amoako","is_ca":true},{"name":"Raymond J. Turner","is_ca":true},{"name":"Stefano Fedi","is_ca":false},{"name":"Davide Zannoni","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0181298563042096,"gpt":0.2626197490257581,"spread":0.2444898927215485,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003280594,0.0001275492,0.0002379635,0.00005019484,0.00007188834,0.000008740719,0.0002829691,0.0001651085,0.00005306826],"category_scores_gemma":[0.0001031427,0.00008248616,0.0002081455,0.00009927083,0.0001835949,0.00001321236,0.00008939637,0.0001339546,0.000003220506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000254183,"about_ca_system_score_gemma":0.0001091927,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001048238,"about_ca_topic_score_gemma":0.000006544743,"domain_scores_codex":[0.9990195,0.000132619,0.0003867655,0.0001012989,0.00009469139,0.0002651055],"domain_scores_gemma":[0.998994,0.00001884832,0.0004824757,0.000251845,0.0001727922,0.00008005799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001310475,0.00006633196,0.02136542,0.00001088224,0.00007096833,0.000001391476,0.00003054552,0.000007491893,0.9777883,0.0001729771,0.0000889516,0.0002657312],"study_design_scores_gemma":[0.000475975,0.0004751414,0.3089482,0.00002485301,0.00005438815,0.0008821665,0.00004453043,7.592367e-7,0.5603653,0.00007842004,0.1284793,0.0001710281],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965031,0.0008761337,0.0002576052,0.0001658362,0.001824116,0.00006474541,0.00002161107,0.000002130586,0.000284748],"genre_scores_gemma":[0.9980052,0.000322418,0.0003487848,0.0001165202,0.0008394807,0.000002561794,0.000006843897,0.00001319772,0.0003449854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.417423,"threshold_uncertainty_score":0.3363688,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3010691101","doi":"10.1074/jbc.ra119.011668","title":"The Escherichia coli cellulose synthase subunit G (BcsG) is a Zn2+-dependent phosphoethanolamine transferase","year":2020,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University","funders":"National Research Council Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Government of Canada; Western Economic Diversification Canada; Wilfrid Laurier University; University of Saskatchewan; Canadian Light Source","keywords":"Biofilm; Escherichia coli; Biochemistry; Transferase; Bacteria; Cellulose; Enzyme; Protein subunit; Chemistry; Biology; Bacterial cellulose; Microbiology","authors":[{"name":"Alexander C. Anderson","is_ca":true},{"name":"Alysha Burnett","is_ca":true},{"name":"Lana K. Hiscock","is_ca":true},{"name":"Kenneth E. Maly","is_ca":true},{"name":"Joel T. Weadge","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01555972298408039,"gpt":0.2323834882984569,"spread":0.2168237653143765,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002529872,0.0001897663,0.0002342208,0.00000611728,0.0001372597,0.00005819418,0.0003508865,0.0002476871,0.0002642961],"category_scores_gemma":[0.0003496223,0.0001152315,0.0002515335,0.0001056692,0.0001560098,0.000005105536,0.00006636175,0.0003179585,0.000007608565],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000221437,"about_ca_system_score_gemma":0.0001079231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002846004,"about_ca_topic_score_gemma":0.000001090529,"domain_scores_codex":[0.9988658,0.00005738895,0.0004364931,0.0002254089,0.000162483,0.0002524669],"domain_scores_gemma":[0.9991404,0.00004645156,0.0002230916,0.0001820148,0.000189581,0.0002184882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008717047,0.0001025178,0.0002716056,0.0000209447,0.0000765661,0.00003696548,0.00002412073,0.00000331794,0.9962821,0.000006358639,0.001618751,0.0006850254],"study_design_scores_gemma":[0.000598805,0.0004834569,0.0002918087,0.00001224367,0.00002505501,0.00004480156,0.00007159153,0.00001253133,0.9188741,0.00001971687,0.07941549,0.0001503281],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953161,0.001674146,0.0006914765,0.001376773,0.0001285612,0.00007665988,0.00003991871,0.000007796544,0.0006885771],"genre_scores_gemma":[0.99637,0.001580702,0.000117546,0.000705888,0.0007225351,0.000005436227,0.00001537268,0.00001268189,0.0004698102],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07779673,"threshold_uncertainty_score":0.4699006,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2038470322","doi":"10.1139/w11-076","title":"Enhancement of antibiotic susceptibility of<i>Stenotrophomonas maltophilia</i>using a polyclonal antibody developed against an ABC multidrug efflux pump","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Stenotrophomonas maltophilia; Efflux; Microbiology; Antibiotics; Polyclonal antibodies; Multiple drug resistance; Ciprofloxacin; Antibody; Biology; Antibiotic resistance; Antimicrobial; Pseudomonas aeruginosa; Bacteria; Immunology; Biochemistry","authors":[{"name":"Arif Al-Hamad","is_ca":false},{"name":"J. Burnie","is_ca":false},{"name":"Mathew Upton","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01906423179735988,"gpt":0.2500778366248565,"spread":0.2310136048274966,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003464374,0.0001642375,0.0003595497,0.0001519499,0.00008497924,0.000006159659,0.0002625861,0.0001895909,0.00008839083],"category_scores_gemma":[0.00008185719,0.0001503614,0.0001470563,0.0001061625,0.0003741845,0.00001018596,0.00002992946,0.0001193258,0.000001543889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006908532,"about_ca_system_score_gemma":0.001343238,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001977596,"about_ca_topic_score_gemma":0.009101494,"domain_scores_codex":[0.9986554,0.0001453666,0.0006152654,0.0002164801,0.00003892475,0.0003285531],"domain_scores_gemma":[0.9986075,0.000009254184,0.000482726,0.0002583533,0.000428235,0.0002139005],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001693572,0.00008779802,0.02442633,0.00003057538,0.00009503473,0.00001713376,0.0001432289,0.000009660166,0.9746403,0.00001757919,0.00002228851,0.0003407899],"study_design_scores_gemma":[0.0005459577,0.0007361274,0.0346882,0.00006319686,0.00003281007,0.0001788175,0.00008507819,0.000003315379,0.9620197,0.000009666594,0.00147875,0.0001584078],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981471,0.0003200057,0.0005720377,0.00001095535,0.0005516253,0.0001156404,0.0001181481,0.000001079038,0.0001633658],"genre_scores_gemma":[0.9962749,0.00008822856,0.003322567,0.0000655946,0.0001236346,3.118687e-7,0.00007034634,0.00001519763,0.00003914947],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01262055,"threshold_uncertainty_score":0.613156,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2914202591","doi":"10.1111/hdi.12722","title":"Outbreak of nonfermentative Gram‐negative bacteria (<i>Ralstonia pickettii</i> and <i>Stenotrophomonas maltophilia</i>) in a hemodialysis center","year":2019,"lang":"en","type":"article","venue":"Hemodialysis International","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Stenotrophomonas maltophilia; Medicine; Outbreak; Antibiotics; Hemodialysis; Dialysis; Intensive care medicine; Pseudomonas aeruginosa; Microbiology; Internal medicine; Bacteria; Virology; Biology","authors":[{"name":"May K. Thet","is_ca":false},{"name":"Ma. Lourdes F. Pelobello","is_ca":false},{"name":"Milton Das","is_ca":false},{"name":"Mohammed M. Alhaji","is_ca":false},{"name":"Vui Heng Chong","is_ca":false},{"name":"Muhammad Abdul Mabood Khalil","is_ca":false},{"name":"Terrence Rohan Chinniah","is_ca":false},{"name":"Jackson Tan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005602727605327231,"gpt":0.2386475305282783,"spread":0.2330448029229511,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001657955,0.0001942844,0.0003108092,0.0001650824,0.00003405793,0.00003829362,0.0001863576,0.0001152452,0.0002762876],"category_scores_gemma":[0.0000647105,0.0001892208,0.0001599064,0.000157603,0.000107456,0.00002100944,0.0001499908,0.00008703922,0.00001927725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006041808,"about_ca_system_score_gemma":0.00005407923,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001300017,"about_ca_topic_score_gemma":0.0002142497,"domain_scores_codex":[0.9986681,0.00008677944,0.0003954461,0.0004387625,0.0002071217,0.0002037879],"domain_scores_gemma":[0.9992659,0.00003247887,0.0002037524,0.0002520723,0.0001914953,0.00005427756],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005252879,0.000214035,0.1514464,0.00002013874,0.0002416239,0.000003307801,0.0002142435,0.00004043092,0.8455966,0.0002074409,0.0001235605,0.001366943],"study_design_scores_gemma":[0.005343395,0.000368265,0.4624334,0.00009085956,0.00008730161,0.00002233694,0.0002695367,0.0003415935,0.5166839,0.0004600625,0.01329729,0.0006020357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953704,0.00003203706,0.0001859143,0.000184151,0.0003787659,0.0002133891,0.000181311,0.000005923236,0.003448053],"genre_scores_gemma":[0.9966478,0.0001327849,0.001340541,0.0002120719,0.0001446386,0.00003484615,0.0002656546,0.00001827638,0.001203433],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3289126,"threshold_uncertainty_score":0.77162,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W6927511752","doi":"10.3334/ornldaac/2130","title":"Daymet: Annual Climate Summaries on a 1-km Grid for North America, Version 4 R1","year":2022,"lang":"en","type":"other","venue":"Oak Ridge National Laboratory Distributed Active Archive Center for Biogeochemical Dynamics","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"NetCDF; Precipitation; Snow; Cloud cover; Data archive; Data file; Grid; Climate change","authors":[],"retraction":null,"screen_n_in":null,"score":{"opus":0.003925555328339855,"gpt":0.2315681016147821,"spread":0.2276425462864423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009297243,0.0004289455,0.0003503948,0.0001688332,0.0003056335,0.00004053951,0.0003178185,0.000269097,0.0001761764],"category_scores_gemma":[0.0003810886,0.0004534445,0.0003132201,0.0002323883,0.0002287144,0.00001048426,0.0002296524,0.0002471829,0.00001121112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003398786,"about_ca_system_score_gemma":0.0002716064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001357347,"about_ca_topic_score_gemma":0.0001820094,"domain_scores_codex":[0.9980928,0.00007798845,0.0002922642,0.0007474648,0.0003193788,0.0004701209],"domain_scores_gemma":[0.9986348,0.000128316,0.0003605651,0.0002723366,0.0004744852,0.0001294591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002249167,0.0005260247,0.0005963371,0.0001269083,0.0003770552,0.000001778664,0.000006773732,0.00003235066,0.009072278,0.001438415,0.9852153,0.0003576029],"study_design_scores_gemma":[0.00115938,0.000442493,0.0003322292,0.00003659225,0.00005448353,0.00000127187,0.00004697242,0.000151846,0.003115993,0.0001175408,0.9940869,0.0004542958],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.005240968,0.00005668082,0.0001823887,0.0001371426,0.0005968869,0.0008417808,0.9906706,0.00004809387,0.002225491],"genre_scores_gemma":[0.0001262549,0.0002037853,0.0006611404,0.000425764,0.0008267396,0.0005011359,0.9969123,0.0001775362,0.0001653212],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.008871592,"threshold_uncertainty_score":0.9997917,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2300680829","doi":"10.1128/aac.02240-15","title":"Effect of High-Dose Antimicrobials on Biofilm Growth of Achromobacter Species Isolated from Cystic Fibrosis Patients","year":2015,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Tobramycin; Colistin; Microbiology; Aztreonam; Amikacin; Levofloxacin; Cystic fibrosis; Biofilm; Achromobacter; Antibiotics; Biology; Antimicrobial; Aminoglycoside; Bacteria; Gentamicin; Pseudomonas; Antibiotic resistance; Imipenem","authors":[{"name":"Sean Kevin Tom","is_ca":true},{"name":"Yvonne Yau","is_ca":true},{"name":"Trevor Beaudoin","is_ca":true},{"name":"John J. LiPuma","is_ca":false},{"name":"Valerie Waters","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005769298148707341,"gpt":0.2200678347039724,"spread":0.214298536555265,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001064677,0.0002104325,0.0003402929,0.0000495474,0.00004479638,0.00002326423,0.0001204601,0.0001544504,0.00005309067],"category_scores_gemma":[0.00003706501,0.0001694978,0.0001003669,0.00009135379,0.0001202476,0.000008808678,0.00004777639,0.00004818381,0.000004513898],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001210574,"about_ca_system_score_gemma":0.00002441113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001976764,"about_ca_topic_score_gemma":0.000006685972,"domain_scores_codex":[0.9990743,0.00008861744,0.000278648,0.0002894455,0.00009208993,0.0001768591],"domain_scores_gemma":[0.999359,0.00002231498,0.0001943434,0.0002185819,0.000144525,0.00006120954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002252762,0.0002458505,0.01858485,0.00005251226,0.0001206643,6.735054e-7,0.00004739683,0.00000212795,0.9702352,0.000008016444,0.007587302,0.0008626505],"study_design_scores_gemma":[0.003098227,0.001912017,0.05459565,0.0000785005,0.00003546094,9.706066e-7,0.00000221959,0.000002834833,0.9374246,0.000008200104,0.002672311,0.000168989],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988815,0.00001450396,0.00006479825,0.00006443399,0.0002593267,0.0002211289,0.0003775353,0.000007223879,0.000109574],"genre_scores_gemma":[0.9984916,0.0002651444,0.000188167,0.0003769526,0.0001208429,0.000002511166,0.000380842,0.00002600616,0.0001479072],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0360108,"threshold_uncertainty_score":0.6911918,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4399563407","doi":"10.1371/journal.pone.0304378","title":"Disinfection of sink drains to reduce a source of three opportunistic pathogens, during Serratia marcescens clusters in a neonatal intensive care unit","year":2024,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Université de Montréal; Polytechnique Montréal; Centre Hospitalier Universitaire Sainte-Justine; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Centre hospitalier universitaire Sainte-Justine; California HIV/AIDS Research Program","keywords":"Serratia marcescens; Neonatal intensive care unit; Intensive care unit; Intensive care medicine; Sink (geography); Medicine; Enterobacteriaceae Infections; Microbiology; Biology; Pediatrics; Enterobacteriaceae; Geography; Escherichia coli","authors":[{"name":"Thibault Bourdin","is_ca":true},{"name":"Marie-Ève Benoit","is_ca":true},{"name":"Michèle Prévost","is_ca":true},{"name":"Dominique Charron","is_ca":true},{"name":"Caroline Quach","is_ca":true},{"name":"Éric Déziel","is_ca":true},{"name":"Philippe Constant","is_ca":true},{"name":"Émilie Bédard","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02575118886977416,"gpt":0.2435966541735309,"spread":0.2178454653037567,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005317275,0.0001022835,0.0001620156,0.0001021647,0.00003277035,0.0000138781,0.00006358818,0.00008173269,0.00001134622],"category_scores_gemma":[0.0001526933,0.0001042377,0.00005538936,0.0001855616,0.00004933366,0.000004786275,0.00007727331,0.00007570198,0.000002062171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003168405,"about_ca_system_score_gemma":0.00008114085,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008629493,"about_ca_topic_score_gemma":0.0009709604,"domain_scores_codex":[0.9993041,0.00002926793,0.0002073766,0.0002218178,0.00009876696,0.0001386827],"domain_scores_gemma":[0.9994161,0.000009990679,0.00005064766,0.0001910846,0.0002851943,0.00004702625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001757173,0.00005225631,0.002911021,0.0005054178,0.00008410944,0.00001044504,0.0008157096,0.00004161555,0.9944594,0.00002320328,0.000009340853,0.0009117521],"study_design_scores_gemma":[0.0004845587,0.0006152804,0.02324468,0.001360118,0.0001320344,0.00001670617,0.002438406,0.0003094664,0.9705613,0.0000182322,0.0005470859,0.0002720784],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983767,0.0002624452,0.0007422994,0.00007288854,0.00007673722,0.0002284801,0.0001027772,0.0000112737,0.0001264358],"genre_scores_gemma":[0.9993294,0.00004978729,0.0001541009,0.00002482776,0.00008183661,0.00001600869,0.0001053748,0.00001898579,0.0002196181],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02389806,"threshold_uncertainty_score":0.4250691,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3172561339","doi":"10.1002/14651858.cd009249.pub4","title":"Antibiotic treatment for<i>Stenotrophomonas maltophilia</i>in people with cystic fibrosis","year":2016,"lang":"en","type":"review","venue":"Cochrane Database of Systematic Reviews","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Stenotrophomonas maltophilia; Cystic fibrosis; Medicine; Stenotrophomonas; Antibiotics; Exacerbation; Intensive care medicine; Sputum; Pseudomonas aeruginosa; Internal medicine; Microbiology; Pseudomonas; Pathology; Biology; Tuberculosis; Bacteria","authors":[{"name":"Reshma Amin","is_ca":true},{"name":"Valerie Waters","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03760456214010414,"gpt":0.3281293279239326,"spread":0.2905247657838284,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000847126,0.0006339237,0.004448371,0.0001349564,0.00005844607,0.00002751406,0.0003441612,0.0002107134,0.0000203939],"category_scores_gemma":[0.0005503379,0.000328537,0.0007648018,0.0002512137,0.00006642542,0.000008618265,0.00006581353,0.00005882907,0.00005266447],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001199722,"about_ca_system_score_gemma":0.0002656093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000238086,"about_ca_topic_score_gemma":0.0001301482,"domain_scores_codex":[0.9964274,0.0005474703,0.001837247,0.00066771,0.0001756882,0.000344473],"domain_scores_gemma":[0.9965129,0.0002599604,0.001409597,0.001598867,0.0001322134,0.00008640701],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.00005842891,0.0001259797,0.000003305295,0.9845155,0.0001746214,0.000005953101,0.000007002167,1.853721e-7,0.00156561,0.00004016601,0.0001998974,0.01330333],"study_design_scores_gemma":[0.0005365696,0.0005225761,0.000001512966,0.6478451,0.001104388,0.00008979672,0.000004329744,5.97126e-7,0.0002160725,7.968869e-7,0.3493285,0.0003498391],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00008892782,0.9889176,0.001156905,0.000003111093,0.0001953875,0.007904752,0.001647596,0.000006166446,0.0000794799],"genre_scores_gemma":[0.00005518285,0.9944252,0.001253738,0.000005389502,0.0001927034,0.001708559,0.001742564,0.00006979893,0.0005468397],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.3491285,"threshold_uncertainty_score":0.9999167,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2112210648","doi":"10.1086/519205","title":"<i>Ralstonia pickettii</i>Bacteremia Associated With Pediatric Extracorporeal Membrane Oxygenation Therapy in a Canadian Hospital","year":2007,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Provincial Laboratory of Public Health; Stollery Children's Hospital; University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Bacteremia; Extracorporeal membrane oxygenation; Medicine; Intensive care medicine; Surgery; Microbiology; Antibiotics; Biology","authors":[{"name":"Sarah Forgie","is_ca":true},{"name":"Terri Kirkland","is_ca":true},{"name":"Robert Rennie","is_ca":true},{"name":"Linda Chui","is_ca":true},{"name":"Geoff Taylor","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007445360356846379,"gpt":0.2436237249985755,"spread":0.2361783646417292,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001433096,0.0002283826,0.0003435635,0.0002075239,0.0001542373,0.00001962393,0.00006334057,0.0003884698,0.00001547502],"category_scores_gemma":[0.0007763016,0.0001951713,0.00007926674,0.0002083268,0.0001097445,0.00002110673,0.00001251163,0.0002047226,0.000003377264],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001171563,"about_ca_system_score_gemma":0.0001761261,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.04355989,"about_ca_topic_score_gemma":0.2675498,"domain_scores_codex":[0.9982605,0.0001881066,0.0004417735,0.0004286623,0.0000642927,0.0006166773],"domain_scores_gemma":[0.9990425,0.0001762578,0.0002449979,0.0001561888,0.0001583296,0.0002217172],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002199825,0.0001290324,0.9865083,0.000005709446,0.00006196823,0.00001162445,0.00003055534,0.00004583063,0.007733828,0.0003523788,0.0002089622,0.00469182],"study_design_scores_gemma":[0.002019228,0.001704588,0.9878498,0.000008574338,0.00001906448,0.0000136112,0.00000581481,0.0000461627,0.0004651144,0.0001392179,0.00744765,0.0002811403],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960071,0.0004590256,0.001229067,0.0007337934,0.0004809416,0.0004102658,0.00002867434,0.00002516107,0.0006259343],"genre_scores_gemma":[0.9977347,0.0007549193,0.00006476471,0.000670609,0.0004783199,0.00004599767,0.0001336211,0.00002186857,0.00009520636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2239899,"threshold_uncertainty_score":0.9628091,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2077446075","doi":"10.1128/genomea.01051-13","title":"Genome Sequence of Cupriavidus metallidurans Strain H1130, Isolated from an Invasive Human Infection","year":2013,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal","funders":"European Space Agency","keywords":"Whole genome sequencing; Strain (injury); Biology; Adaptation (eye); Bacteria; Genome; Sequence (biology); Microbiology; Computational biology; Genetics; Gene","authors":[{"name":"Pieter Monsieurs","is_ca":false},{"name":"Ann Provoost","is_ca":false},{"name":"Kristel Mijnendonckx","is_ca":false},{"name":"Natalie Leys","is_ca":false},{"name":"Christiane Gaudreau","is_ca":true},{"name":"Rob Van Houdt","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0206063778385182,"gpt":0.2729623906288195,"spread":0.2523560127903013,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001166723,0.0001921292,0.0001937581,0.00006037008,0.0001561658,0.00005931401,0.000189974,0.000144029,0.000546929],"category_scores_gemma":[0.00002165885,0.0001907742,0.0000826939,0.0001362362,0.00008675171,0.00003616327,0.00006817317,0.00007739661,0.00005718302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004586303,"about_ca_system_score_gemma":0.00007740148,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001570665,"about_ca_topic_score_gemma":0.0004638215,"domain_scores_codex":[0.9987761,0.00007816849,0.0003398503,0.0003873887,0.0001479841,0.0002705033],"domain_scores_gemma":[0.9990444,0.000004818713,0.0001859404,0.0004133313,0.0002623207,0.00008923715],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002890692,0.000120165,0.002447758,0.0000137746,0.0001403477,0.000001235413,0.00009833892,0.00005514449,0.9967975,0.00002225078,0.00001829964,0.0002562966],"study_design_scores_gemma":[0.002906827,0.003970697,0.6044604,0.00006640401,0.0002156009,0.00001372792,0.0002469551,0.00004334142,0.2937749,0.001881519,0.09099782,0.001421826],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966216,0.00010765,0.001054981,0.00001935527,0.0002021977,0.0003860292,0.0009192997,0.00001664125,0.0006722533],"genre_scores_gemma":[0.9932664,0.0001988913,0.0002169783,0.000113385,0.00019975,0.00005738028,0.005407165,0.00002107095,0.0005189673],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7030226,"threshold_uncertainty_score":0.7779545,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2941864504","doi":"10.1099/acmi.0.000017","title":"Application of whole genome sequencing to query a potential outbreak of Elizabethkingia anophelis in Ontario, Canada","year":2019,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Outbreak; Whole genome sequencing; Biology; Multilocus sequence typing; Genome; Genetics; rpoB; Typing; Computational biology; Gene; Virology; Genotype","authors":[{"name":"Lisa R. McTaggart","is_ca":true},{"name":"Patrick J. Stapleton","is_ca":true},{"name":"Alireza Eshaghi","is_ca":true},{"name":"Deirdre Soares","is_ca":true},{"name":"Sylvain Brisse","is_ca":false},{"name":"Samir N. Patel","is_ca":true},{"name":"Julianne V. Kus","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004230521854370876,"gpt":0.2126208890701227,"spread":0.2083903672157519,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008267439,0.00008647272,0.0001817458,0.0000536937,0.00001476639,0.000005136909,0.0002056158,0.0001096401,0.00004864643],"category_scores_gemma":[0.00001249594,0.00008719238,0.00003429567,0.00009281724,0.00002635575,0.000004701275,0.0001260854,0.00005517533,0.000002828036],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001267809,"about_ca_system_score_gemma":0.0005400311,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8118793,"about_ca_topic_score_gemma":0.9502283,"domain_scores_codex":[0.9993008,0.00003044455,0.0002513753,0.0002300963,0.00002501362,0.00016224],"domain_scores_gemma":[0.9995177,0.000005834139,0.0001239021,0.0002351896,0.00009490528,0.00002247148],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006704553,0.00001527372,0.03257481,0.00002143271,0.00001576525,6.093803e-7,0.00002116521,0.000665342,0.9664109,0.000015826,0.00007033834,0.000121475],"study_design_scores_gemma":[0.0003776886,0.0001445586,0.1007693,0.00001977101,0.000008741277,0.00001145098,0.00003191007,0.000006735519,0.8624286,0.00001422185,0.03602179,0.000165164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983081,0.00006048437,0.0008839053,0.0000289769,0.0001808097,0.0002129864,0.00008945321,0.000001777044,0.000233525],"genre_scores_gemma":[0.9991182,0.000005989352,0.0001827628,0.0001369596,0.00002786654,0.00001214686,0.0002853854,0.000007908569,0.0002227545],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1383491,"threshold_uncertainty_score":0.3555602,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2178070638","doi":"10.1016/j.clae.2015.09.001","title":"Assessment of biofilm formation of E. meningoseptica, D. acidovorans, and S. maltophilia in lens cases and their growth on recovery media","year":2015,"lang":"en","type":"article","venue":"Contact Lens and Anterior Eye","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Microbiology; Biofilm; Lens (geology); Biology; Bacteria","authors":[{"name":"Lucy Liu","is_ca":true},{"name":"Junghee Seo","is_ca":true},{"name":"David J. McCanna","is_ca":true},{"name":"Lakshman N. Subbaraman","is_ca":true},{"name":"Lyndon Jones","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01630161235491795,"gpt":0.2572264046891983,"spread":0.2409247923342803,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001271475,0.00008898511,0.0001717538,0.00005016453,0.00002151661,0.00001262039,0.00002418031,0.00006202576,0.000002369552],"category_scores_gemma":[0.00005606314,0.00006955973,0.00002294668,0.00003073424,0.00005163216,0.00001649508,0.00003060228,0.00003472939,7.279211e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007798078,"about_ca_system_score_gemma":0.00002523787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004590819,"about_ca_topic_score_gemma":0.0001159613,"domain_scores_codex":[0.9995428,0.00002949615,0.0001746892,0.0001277365,0.00003810062,0.00008718036],"domain_scores_gemma":[0.9997318,0.00002241766,0.00008186023,0.00008096327,0.00005196505,0.0000309797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001706752,0.00003398833,0.01731413,0.0000671092,0.00001182877,0.000002454924,0.0001480748,2.025261e-7,0.9801544,0.0002106252,0.00001342011,0.001873123],"study_design_scores_gemma":[0.002391643,0.003174728,0.4997845,0.0004263691,0.00002584555,0.0000384001,0.0006501764,0.00009487694,0.4908158,0.0001108544,0.002202795,0.0002840782],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987285,0.0005641191,0.00006616575,0.00004907338,0.00006175758,0.00008695427,0.00007771917,0.000001940389,0.0003638041],"genre_scores_gemma":[0.9974884,0.002306111,0.00009468549,0.00003864291,0.00002930174,0.000004186899,0.00001953776,0.000005411706,0.00001367514],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4893386,"threshold_uncertainty_score":0.2836564,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}