{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":1621,"total_is_capped":false,"direct_labels_cover":3,"predictions_cover":1621,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"f342a9b15ace","filters":{"topic":"Legume Nitrogen Fixing Symbiosis"}},"results":[{"id":"W2139520931","doi":"10.1023/a:1026037216893","title":"Plant growth promoting rhizobacteria as biofertilizers","year":2003,"lang":"en","type":"article","venue":"Plant and Soil","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":3154,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Rhizobacteria; Rhizosphere; Biofertilizer; Biology; Plant physiology; Plant growth; Biotechnology; Botany; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01399754615405916,"gpt":0.1886471735618311,"spread":0.1746496274077719,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000159532,0.0001164898,0.0001256919,0.00000814055,0.0001719179,0.00006891681,0.00008727982,0.00007330167,0.0001849015],"category_scores_gemma":[0.00007775936,0.0000429365,0.00003791445,0.00009978722,0.00003005627,0.00007334245,0.00002364088,0.00007345198,0.00005801706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008562621,"about_ca_system_score_gemma":0.000006066181,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002592796,"about_ca_topic_score_gemma":0.0001545185,"domain_scores_codex":[0.9992383,0.00005577746,0.0001245405,0.0002190665,0.000109145,0.0002532097],"domain_scores_gemma":[0.9997174,0.00009290856,0.00004318876,0.00002679907,0.00001695078,0.0001027504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003497122,0.00005638667,0.06013472,0.00001462699,0.00002294025,0.00002538101,0.0003236276,4.042239e-9,0.934356,0.002550339,0.0005706935,0.001910256],"study_design_scores_gemma":[0.000560156,0.0005113574,0.1205825,0.0001140196,0.00005348327,0.0004674029,0.0006450324,0.00002746526,0.8571096,0.003715417,0.01538779,0.0008257644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954082,0.0001066695,3.013807e-8,0.000359298,0.000104207,0.00007718193,0.00008008574,0.00006622492,0.003798141],"genre_scores_gemma":[0.9994783,0.00002839872,0.00002558026,0.0001825119,0.00006437398,0.00000613974,0.00007889637,8.550082e-7,0.0001349373],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07724647,"threshold_uncertainty_score":0.2024542,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2897314349","doi":"10.3389/fpls.2018.01473","title":"Plant Growth-Promoting Rhizobacteria: Context, Mechanisms of Action, and Roadmap to Commercialization of Biostimulants for Sustainable Agriculture","year":2018,"lang":"en","type":"review","venue":"Frontiers in Plant Science","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1947,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Hebrew University of Jerusalem; Networks of Centres of Excellence of Canada; BioFuelNet Canada","keywords":"Rhizobacteria; Biology; Abiotic stress; Sustainable agriculture; Biotechnology; Context (archaeology); Rhizosphere; Biofertilizer; Agriculture; Agronomy; Ecology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.02767607409076353,"gpt":0.2610988914706033,"spread":0.2334228173798397,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001046782,0.0002832299,0.001020504,0.0001670416,0.0002472504,0.00007211291,0.0006859079,0.0002423394,0.000005800267],"category_scores_gemma":[0.0004267929,0.0001205387,0.0001187501,0.001386976,0.0002368544,0.0002733232,0.0001988884,0.0001079165,9.733201e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001382155,"about_ca_system_score_gemma":0.00008758246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003173399,"about_ca_topic_score_gemma":0.0001237716,"domain_scores_codex":[0.9978796,0.00009729579,0.0006231503,0.0005826421,0.0003334078,0.0004838878],"domain_scores_gemma":[0.9986665,0.0001706796,0.0005919348,0.00009139755,0.0003500909,0.0001294446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004607581,0.0008529568,0.004608059,0.03241524,0.0003641912,0.00003961864,0.002738985,8.486526e-7,0.1430155,0.01167493,0.06888611,0.7349428],"study_design_scores_gemma":[0.001620616,0.004628235,0.004167078,0.04211409,0.001325696,0.0002825967,0.00849804,0.000289261,0.1846778,0.008187138,0.7400347,0.004174753],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.08750608,0.8875365,0.001506784,0.0003779678,0.00395204,0.01055486,0.00822462,0.0001588054,0.0001823498],"genre_scores_gemma":[0.1250166,0.8567515,0.0137595,0.0002728639,0.0006996,0.0004622441,0.002625312,0.00002246079,0.000389896],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.730768,"threshold_uncertainty_score":0.4915424,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2621263386","doi":"10.3389/fmicb.2017.00971","title":"Microbial Phosphorus Solubilization and Its Potential for Use in Sustainable Agriculture","year":2017,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1627,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; North-West University; National Research Foundation","keywords":"Environmental science; Agriculture; Soil fertility; Sustainable agriculture; Mineralization (soil science); Biofertilizer; Beneficial organism; Microorganism; Phosphorus; Phosphorite; Agronomy; Fertilizer; Biology; Chemistry; Soil water; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.02639127471568114,"gpt":0.2529570336318762,"spread":0.226565758916195,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003702969,0.0004488779,0.001435693,0.00009740573,0.0002326564,0.0001487472,0.0005658081,0.001132443,0.00001433665],"category_scores_gemma":[0.0002087265,0.0001955381,0.0002944242,0.0002655119,0.0001132102,0.0002119502,0.0002437781,0.0003714596,0.000006018991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002418827,"about_ca_system_score_gemma":0.00005344369,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002844399,"about_ca_topic_score_gemma":0.0005123701,"domain_scores_codex":[0.997601,0.0002177986,0.0005660774,0.0008165907,0.00003742742,0.0007611623],"domain_scores_gemma":[0.9991907,0.0001154215,0.0004144562,0.000115122,0.0001011847,0.00006306274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001907936,0.0003677839,0.001594708,0.00533773,0.0002845026,0.0001488351,0.000130223,9.420364e-7,0.04011169,0.0002266023,0.079933,0.8716732],"study_design_scores_gemma":[0.0003530359,0.00009868044,0.0001209886,0.0008296051,0.0001307793,0.00007324968,0.00006753242,0.000003934512,0.0002185011,0.00006067352,0.9975632,0.0004798549],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01054047,0.9859682,0.000006477907,0.00006178023,0.0009240565,0.001965105,0.0004940381,0.0000276954,0.00001217578],"genre_scores_gemma":[0.0005263847,0.9935691,0.0008067103,0.00005343086,0.0002618417,0.0001994395,0.002269719,0.000007140004,0.002306248],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9176301,"threshold_uncertainty_score":0.8734441,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996723297","doi":"10.1034/j.1399-3054.2003.00086.x","title":"Methods for isolating and characterizing ACC deaminase‐containing plant growth‐promoting rhizobacteria","year":2003,"lang":"en","type":"article","venue":"Physiologia Plantarum","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1551,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhizobacteria; Rhizosphere; Bacteria; Canola; Ethylene; Biology; Seedling; 1-Aminocyclopropane-1-carboxylic acid; Elongation; Botany; Horticulture; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02482843512239804,"gpt":0.2620041979684417,"spread":0.2371757628460436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007881706,0.0002796719,0.0003860618,0.00001906547,0.0004702766,0.0001111891,0.000209899,0.0001462413,0.00005490948],"category_scores_gemma":[0.0005244276,0.0001258975,0.000104202,0.0001473805,0.00004621139,0.0002284834,0.00009519339,0.0001749379,0.000007507015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003201149,"about_ca_system_score_gemma":0.000009436825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009387398,"about_ca_topic_score_gemma":0.00001920398,"domain_scores_codex":[0.9981405,0.00029412,0.0003290398,0.0005342067,0.00007842477,0.0006237072],"domain_scores_gemma":[0.9982756,0.001261112,0.0002245115,0.00006866294,0.00004986172,0.0001202629],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007141242,0.00002881657,0.009155906,0.00002766213,0.00003344165,0.000002094862,0.0001355983,2.32119e-8,0.979408,0.0004108098,0.00002514096,0.01070111],"study_design_scores_gemma":[0.0003681389,0.0007555175,0.1089632,0.0001069897,0.00005144044,0.00007887185,0.0004907533,0.00025475,0.8853667,0.001802472,0.001161449,0.0005997278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986372,0.000110671,0.00005000822,0.0002056141,0.0001977107,0.0003377727,0.0001736129,0.0001426034,0.000144814],"genre_scores_gemma":[0.9815883,0.00001643393,0.01741056,0.0003877848,0.0002032021,0.00005962202,0.0003205367,0.000004132906,0.000009447062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09980733,"threshold_uncertainty_score":0.5133952,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2162307791","doi":"10.1007/s11104-013-1956-x","title":"Advances in plant growth-promoting bacterial inoculant technology: formulations and practical perspectives (1998–2013)","year":2013,"lang":"en","type":"article","venue":"Plant and Soil","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1337,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"TerraBioGen (Canada)","funders":"Centro de Investigaciones Biológicas del Noroeste; Consejo Nacional de Ciencia y Tecnología; Université Laval","keywords":"Microbial inoculant; Biotechnology; Biology; Biochemical engineering; Environmental science; Inoculation; Agricultural engineering; Engineering; Horticulture","retraction":null,"screen_n_in":null,"score":{"opus":0.0118602188108639,"gpt":0.2172593939982737,"spread":0.2053991751874097,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001017647,0.0001118381,0.0001494626,0.00003190211,0.0001559243,0.00008137109,0.00005369784,0.0001092434,0.00003928622],"category_scores_gemma":[0.0000926168,0.00004623437,0.00001871842,0.0001405125,0.00008156041,0.0004070195,0.00006999851,0.0001336385,0.00001465438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001273191,"about_ca_system_score_gemma":0.000004751854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004092733,"about_ca_topic_score_gemma":0.00108798,"domain_scores_codex":[0.9992628,0.00003130226,0.0001476356,0.0002431324,0.00008603316,0.0002291398],"domain_scores_gemma":[0.9996515,0.0001823287,0.00005543029,0.00002664234,0.0000236286,0.0000604603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008450446,0.0002727428,0.3596489,0.00004468303,0.00003380844,0.0000508107,0.002741493,1.019341e-7,0.6012942,0.01009387,0.0003870363,0.02534785],"study_design_scores_gemma":[0.001844588,0.001088684,0.8960097,0.0003586774,0.00008014852,0.001228092,0.01244235,0.002369211,0.03863516,0.03541604,0.008964036,0.001563288],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949226,0.0005271755,4.231914e-7,0.00399041,0.00004454371,0.0001582051,0.00005180466,0.00005407129,0.0002508084],"genre_scores_gemma":[0.9990702,0.0004879695,0.0002227149,0.00003013968,0.0001027141,0.00002648442,0.0000502059,9.033574e-7,0.000008627977],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5626591,"threshold_uncertainty_score":0.1885383,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2048059718","doi":"10.1007/s00374-006-0152-z","title":"Biological nitrogen fixation by common beans (Phaseolus vulgaris L.) increases with bio-char additions","year":2006,"lang":"en","type":"article","venue":"Biology and Fertility of Soils","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1332,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"International Development Research Centre","funders":"","keywords":"Phaseolus; Char; Biochar; Chemistry; Nitrogen fixation; Ammonium; Biomass (ecology); Charcoal; Agronomy; Botany; Nitrogen; Animal science; Biology; Pyrolysis","retraction":null,"screen_n_in":null,"score":{"opus":0.01184880283044828,"gpt":0.2170323449637544,"spread":0.2051835421333061,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001901141,0.0001685836,0.0002840702,0.00001568383,0.0002470549,0.00001469385,0.000147765,0.0002467613,0.0002774005],"category_scores_gemma":[0.00004816969,0.00006628034,0.00007185665,0.0001643194,0.0005488534,0.00007590969,0.00005133588,0.0001043379,0.000009133964],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001549821,"about_ca_system_score_gemma":0.000007893183,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005089198,"about_ca_topic_score_gemma":0.00148888,"domain_scores_codex":[0.9988648,0.0001760866,0.000279853,0.0003418794,0.00007517634,0.0002621497],"domain_scores_gemma":[0.9993291,0.0003112652,0.0001380795,0.00007678218,0.0000695738,0.00007521581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002121883,0.0003574772,0.6390959,0.000004910441,0.00003127304,9.697533e-7,0.00001212259,3.760658e-8,0.3557602,0.0004575155,0.0008912071,0.003176184],"study_design_scores_gemma":[0.0003259654,0.0008110325,0.923897,0.00001552188,0.00003650049,0.000008854923,0.00006516798,0.00000772416,0.06430958,0.009423928,0.0008849259,0.0002138541],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969421,0.0008045433,0.00000658097,0.00054427,0.00001828644,0.0001843659,0.001081196,0.00007402535,0.0003446215],"genre_scores_gemma":[0.9979976,0.00002284445,0.0001142649,0.0001516876,0.0000596762,0.00002467773,0.001610568,9.978679e-7,0.00001765902],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2914506,"threshold_uncertainty_score":0.7693378,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2169651905","doi":"10.1086/668166","title":"A Symbiotic View of Life: We Have Never Been Individuals","year":2012,"lang":"en","type":"review","venue":"The Quarterly Review of Biology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1183,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"York University","funders":"Academy of Finland; National Evolutionary Synthesis Center","keywords":"Multicellular organism; Holobiont; Biology; Organism; Natural selection; Evolutionary biology; Mechanism (biology); Cognitive science; Biological evolution; Ecology; Genetics; Selection (genetic algorithm); Symbiosis; Epistemology; Gene; Psychology","retraction":null,"screen_n_in":null,"score":{"opus":0.05159249130853947,"gpt":0.2967608906325281,"spread":0.2451683993239886,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001779002,0.0005865266,0.003922809,0.00003644864,0.00008272105,0.00001185081,0.00163362,0.0005249059,0.001079156],"category_scores_gemma":[0.00008715675,0.0001655658,0.00137163,0.0005921481,0.0003939951,0.0000943947,0.0001487936,0.0004236915,0.0003108473],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003077114,"about_ca_system_score_gemma":0.00007145912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001153697,"about_ca_topic_score_gemma":0.00001647479,"domain_scores_codex":[0.9949012,0.001973516,0.001852892,0.0004677027,0.0002412758,0.0005634417],"domain_scores_gemma":[0.9961063,0.001180407,0.001999717,0.0004318281,0.0001304928,0.0001512604],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000001294086,0.00007124207,0.00004642033,0.0420857,0.000285753,2.35122e-7,0.00004594346,1.010956e-10,0.0000836065,0.0002888269,0.0004863255,0.9566047],"study_design_scores_gemma":[0.00004929898,0.0006193611,0.00007493115,0.04771952,0.001962769,0.00002785649,0.00002692971,1.839703e-8,0.000007027183,0.0002045352,0.9489716,0.0003361605],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002422616,0.9964477,1.837597e-7,0.0008566474,0.000225397,0.001563215,0.0004445432,0.00002998917,0.0001900547],"genre_scores_gemma":[0.000627657,0.997907,0.00003305584,0.0005475171,0.0003725972,0.0001118009,0.0003227873,0.000006125345,0.00007138791],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9562685,"threshold_uncertainty_score":0.999834,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2145385227","doi":"10.1126/science.1060966","title":"The Composite Genome of the Legume Symbiont <i>Sinorhizobium meliloti</i>","year":2001,"lang":"en","type":"article","venue":"Science","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1159,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"National Institute of General Medical Sciences","keywords":"Sinorhizobium meliloti; Biology; Genome; Whole genome sequencing; Nitrogen fixation; Symbiosis; Bacteria; Circular bacterial chromosome; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.009452129312231744,"gpt":0.1985233577738691,"spread":0.1890712284616374,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007321942,0.0001014482,0.00009895596,0.00000824065,0.00115852,0.0001262201,0.001665808,0.00003231163,0.0000460247],"category_scores_gemma":[0.00008216942,0.00002490545,0.00009896839,0.001336674,0.001033649,0.0001768759,0.0003014556,0.0001038406,0.00005520364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004303874,"about_ca_system_score_gemma":0.00003127754,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001656392,"about_ca_topic_score_gemma":0.0001991664,"domain_scores_codex":[0.9984986,0.00006339634,0.0001999139,0.000273219,0.0005680856,0.0003968328],"domain_scores_gemma":[0.9993067,0.0001538013,0.000125605,0.0001903181,0.0001437706,0.00007976028],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000005280444,0.00002117756,0.01096657,5.956803e-7,0.000002353899,4.634478e-7,0.00004263334,3.058063e-7,0.9865658,0.0004718973,0.00005864684,0.001864247],"study_design_scores_gemma":[0.00005711817,0.00006726744,0.6332986,0.00001116381,0.000008455551,0.0000190711,0.0001297364,0.000007472944,0.350756,0.0006699617,0.01485311,0.0001219727],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910776,0.000325913,2.266245e-7,0.004878422,0.0003428193,0.0001607827,0.000009260896,0.00003162435,0.003173322],"genre_scores_gemma":[0.9988754,0.00002013573,0.00003074095,0.0003894852,0.0000900096,0.000004985125,8.850106e-7,6.0318e-7,0.0005877239],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6358098,"threshold_uncertainty_score":0.8910518,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2022742799","doi":"10.1016/j.biotechadv.2010.02.001","title":"Using soil bacteria to facilitate phytoremediation","year":2010,"lang":"en","type":"review","venue":"Biotechnology Advances","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1130,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Phytoremediation; Bacteria; Environmental science; Biotechnology; Biology; Soil water; Soil science","retraction":null,"screen_n_in":null,"score":{"opus":0.0815246479089914,"gpt":0.297357638250059,"spread":0.2158329903410676,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001905377,0.000446654,0.001010616,0.00008708944,0.0001986032,0.00004202278,0.0007593628,0.001463225,0.0001331148],"category_scores_gemma":[0.0002743596,0.0001749024,0.000290315,0.0008386308,0.0001616943,0.0001646677,0.0002186611,0.0006436816,0.0003990042],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008769353,"about_ca_system_score_gemma":0.00003175492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004452823,"about_ca_topic_score_gemma":0.0004088272,"domain_scores_codex":[0.9980422,0.00009127871,0.0004763782,0.0007247552,0.0001725,0.0004929465],"domain_scores_gemma":[0.9990996,0.0002051689,0.0003433191,0.0001945889,0.00005275843,0.0001045732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002104862,0.00001827921,0.000005926991,0.0002434792,0.00001771087,0.000002724525,0.000005402372,3.612524e-8,0.04695943,0.00003804186,0.00003665766,0.9526702],"study_design_scores_gemma":[0.00002562472,0.0000870728,0.00001228079,0.0005994936,0.00008981668,0.00002347401,0.00001111532,4.890861e-7,0.004745701,0.0001440699,0.99385,0.000410879],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01143091,0.985938,0.000007018269,0.0003202623,0.0009847993,0.000593969,0.0002646635,0.0003995939,0.0000607794],"genre_scores_gemma":[0.0001644014,0.9963579,0.002605787,0.00005965274,0.0004594091,0.00009279663,0.0001564453,0.000004740024,0.00009890138],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9938133,"threshold_uncertainty_score":0.9998331,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1971195700","doi":"10.1038/nature02045","title":"A receptor kinase gene of the LysM type is involved in legumeperception of rhizobial signals","year":2003,"lang":"en","type":"article","venue":"Nature","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1002,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Nod factor; Biology; Lotus japonicus; Cell biology; Rhizobia; Protein kinase domain; Signal transduction; Biochemistry; Genetics; Gene; Bacteria; Symbiosis","retraction":null,"screen_n_in":null,"score":{"opus":0.01376608457119487,"gpt":0.2266898009983915,"spread":0.2129237164271966,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002026745,0.00008498989,0.0001428618,0.00001224708,0.00003515748,0.000006367644,0.0002099235,0.0005501987,0.0008736994],"category_scores_gemma":[0.0001760662,0.0000287754,0.00009663072,0.0006267993,0.00004634243,0.00004894595,0.00002903971,0.0004376019,0.000012683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002482143,"about_ca_system_score_gemma":0.00001502003,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001238476,"about_ca_topic_score_gemma":0.0002200602,"domain_scores_codex":[0.9992037,0.000120602,0.0001789076,0.0001573884,0.0002095948,0.0001298161],"domain_scores_gemma":[0.9996315,0.00005624198,0.0001032023,0.00007099319,0.0001129034,0.00002519141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002129178,0.00005937119,0.01947063,0.000005136215,0.000006010842,2.090766e-7,0.0001545971,1.750427e-7,0.9774922,0.00009462924,0.0020127,0.0006830242],"study_design_scores_gemma":[0.0001277396,0.00007729582,0.06655688,0.00002943044,0.000006245635,6.37464e-7,0.0001347286,0.000001467534,0.9309506,0.0002292254,0.0018121,0.0000736442],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983369,0.0004004589,3.373366e-8,0.0006331261,0.0001932116,0.0001400022,0.00003638159,0.000008630941,0.0002512353],"genre_scores_gemma":[0.9990868,0.00001237366,0.0001083689,0.0005175328,0.00005924095,0.000002498025,0.00001026223,8.757906e-7,0.0002020577],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04708624,"threshold_uncertainty_score":0.9566396,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1981201587","doi":"10.1016/j.soilbio.2004.08.030","title":"Intracellular and extracellular PGPR: commonalities and distinctions in the plant–bacterium signaling processes","year":2004,"lang":"en","type":"article","venue":"Soil Biology and Biochemistry","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":991,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Rhizobia; Rhizosphere; Biology; Rhizobacteria; Frankia; Symbiosis; Bacteria; Root nodule; Extracellular; Botany; Symbiotic bacteria; Cell biology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01368124081858676,"gpt":0.20214615040412,"spread":0.1884649095855332,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000191215,0.0001257486,0.0001217993,0.000006219241,0.0002271812,0.00005028761,0.0001033158,0.0001605048,0.00001355046],"category_scores_gemma":[0.00005931219,0.00004816328,0.00001676476,0.0001065842,0.0004467724,0.00004037398,0.00005480102,0.0001532189,7.75571e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007467138,"about_ca_system_score_gemma":0.00001102859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001966599,"about_ca_topic_score_gemma":0.0001955978,"domain_scores_codex":[0.9993414,0.00004186929,0.0001372369,0.0002494054,0.00004388222,0.0001862283],"domain_scores_gemma":[0.9996729,0.0001773176,0.00004663431,0.00003910522,0.00002012407,0.00004393816],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001554559,0.00004001428,0.04554062,0.00004972225,0.000009603006,0.000006499618,0.0002004672,5.954304e-8,0.9530014,0.0002847347,0.000007396205,0.0008439391],"study_design_scores_gemma":[0.0003460672,0.0001437576,0.05396087,0.00008429844,0.00003464435,0.0002712019,0.00276274,0.00000264407,0.9342403,0.00686715,0.0009541833,0.0003321146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920705,0.005222887,7.531536e-7,0.002442077,0.00001967895,0.00006533857,0.00008787648,0.00002171855,0.00006915515],"genre_scores_gemma":[0.9993802,0.0001608641,0.00002873506,0.0001305745,0.0001073909,0.00001402903,0.0001472303,7.203113e-7,0.00003027924],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01876106,"threshold_uncertainty_score":0.1964042,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2083522928","doi":"10.1038/nature00841","title":"A plant receptor-like kinase required for both bacterial and fungal symbiosis","year":2002,"lang":"en","type":"article","venue":"Nature","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":935,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Symbiosis; Biology; Lotus japonicus; Root nodule; Arbuscular mycorrhiza; Botany; Mycorrhiza; Bacteria; Cell biology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01604162733534367,"gpt":0.2107769104839723,"spread":0.1947352831486286,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001204511,0.0001581498,0.0001770213,0.00001107022,0.0001948641,0.00008741231,0.000179352,0.0008118085,0.0007192483],"category_scores_gemma":[0.00008768506,0.00006270475,0.0000925541,0.0001548222,0.00003483788,0.0001224302,0.00005012044,0.0004158406,0.00002822312],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003332616,"about_ca_system_score_gemma":0.000002506262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002801143,"about_ca_topic_score_gemma":0.0000766065,"domain_scores_codex":[0.9990128,0.00003991805,0.0001443206,0.0003445158,0.0001585062,0.0002999415],"domain_scores_gemma":[0.9995675,0.0001551523,0.00006441321,0.00005948171,0.00004127103,0.0001121704],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009545651,0.0000682854,0.00180196,0.00001211208,0.0000246991,0.00000398777,0.00007553481,2.989543e-9,0.8890162,0.0001566007,0.09792495,0.01082028],"study_design_scores_gemma":[0.002175541,0.001588282,0.04078803,0.0001491031,0.0001358075,0.00009433977,0.0002211495,0.00009026194,0.2484191,0.0005494233,0.7044321,0.001356946],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933634,0.0009843587,9.159623e-8,0.003836503,0.0005879221,0.0002721819,0.0006274386,0.00009318906,0.0002349176],"genre_scores_gemma":[0.9968849,0.00003637145,0.0003214389,0.001055139,0.0007753677,0.00002962875,0.000166654,0.00000207024,0.000728464],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.640597,"threshold_uncertainty_score":0.7875264,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2119158919","doi":"10.1139/w04-035","title":"<i>Azospirillum</i>-plant relationships: physiological, molecular, agricultural, and environmental advances (1997-2003)","year":2004,"lang":"en","type":"review","venue":"Canadian Journal of Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":924,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Microbial inoculant; Rhizosphere; Bacteria; Biology; Rhizobacteria; Agriculture; Microorganism; Biotechnology; Botany; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.0226501877685405,"gpt":0.2147458308131059,"spread":0.1920956430445654,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002661725,0.0004580957,0.001230928,0.00007417534,0.0003133375,0.00005974821,0.000542121,0.0006561014,0.0001803904],"category_scores_gemma":[0.0001399717,0.0001689312,0.0003777423,0.0003573043,0.0004120113,0.0001308699,0.00004915019,0.0008410643,0.0000534612],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003334716,"about_ca_system_score_gemma":0.0003214593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002818378,"about_ca_topic_score_gemma":0.003048553,"domain_scores_codex":[0.9977686,0.0004303892,0.0007850131,0.0004038116,0.00006761499,0.0005446033],"domain_scores_gemma":[0.9983729,0.0001571085,0.0007952139,0.00008193019,0.00006332732,0.0005295433],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002943647,0.000280721,0.0006169948,0.002834269,0.001500552,0.001350538,0.0003424148,0.000004711961,0.1930905,0.0005977974,0.0309627,0.7683893],"study_design_scores_gemma":[0.0001159204,0.0003434761,0.0002718833,0.001625978,0.0002796742,0.003601362,0.0001157842,1.362889e-8,0.0001569857,0.00007515255,0.9929851,0.00042872],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03620328,0.9609501,2.11099e-7,0.0001335272,0.0003854707,0.0002920335,0.001991652,0.00000989672,0.00003386266],"genre_scores_gemma":[0.01200163,0.9856643,0.0001636612,0.0001648814,0.0002712489,0.000009312564,0.001667525,0.000005092678,0.00005236118],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9620224,"threshold_uncertainty_score":0.6888816,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2020385856","doi":"10.1007/s10658-007-9162-4","title":"Promotion of plant growth by ACC deaminase-producing soil bacteria","year":2007,"lang":"en","type":"article","venue":"European Journal of Plant Pathology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":893,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Bacteria; Plant growth; Ethylene; Enzyme; Bacterial growth; Botany; Promotion (chess); Biochemistry; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01613039354645403,"gpt":0.1974582947546542,"spread":0.1813279012082002,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002582932,0.0001383599,0.0002685708,0.00004186911,0.00007464711,0.00001915324,0.0003432436,0.00005078975,0.00008953542],"category_scores_gemma":[0.0001923308,0.00005752811,0.000103319,0.0001454471,0.0000672887,0.0001162719,0.00006121933,0.0002237499,0.00002494903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002148133,"about_ca_system_score_gemma":0.000008173804,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009681176,"about_ca_topic_score_gemma":0.00002114009,"domain_scores_codex":[0.9982199,0.0004883663,0.0006136306,0.0001948173,0.0001953456,0.0002879456],"domain_scores_gemma":[0.9989139,0.0001469463,0.0006475438,0.00005632465,0.000125793,0.0001094765],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001099946,0.0001237213,0.008314323,0.000009038537,0.00001735534,0.0008790983,0.0002016069,1.073687e-7,0.9841516,0.00001764794,0.002265282,0.003910203],"study_design_scores_gemma":[0.0003605935,0.001761531,0.4060342,0.00009773496,0.00003876151,0.00381189,0.0001391702,0.000001042487,0.5859669,0.00003659014,0.00156825,0.0001832629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984396,0.0001173771,0.0000272141,0.0003334558,0.0003618168,0.00006475139,0.000266249,0.00001755239,0.0003719997],"genre_scores_gemma":[0.9988758,0.00002457758,0.0004379698,0.00008533039,0.0004222817,1.973051e-7,0.0001016561,0.000002768595,0.00004944915],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3981847,"threshold_uncertainty_score":0.2345928,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2061503988","doi":"10.1080/07352680701572966","title":"Promotion of Plant Growth by Bacterial ACC Deaminase","year":2007,"lang":"en","type":"article","venue":"Critical Reviews in Plant Sciences","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":880,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Plant growth; Bacteria; Biology; Biotechnology; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.05217208238480396,"gpt":0.2884846020908502,"spread":0.2363125197060462,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002734516,0.0001387689,0.0003210861,0.00002874116,0.0001282102,0.0000473174,0.0004381035,0.0000890341,0.0002614692],"category_scores_gemma":[0.00167667,0.0000513616,0.00007903673,0.0005850626,0.0004279797,0.0002261454,0.00006394704,0.0001121355,0.00003256557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002496728,"about_ca_system_score_gemma":0.0000117357,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000121677,"about_ca_topic_score_gemma":0.0002335618,"domain_scores_codex":[0.9981501,0.0001535982,0.0005563244,0.0003547954,0.0003415014,0.0004436835],"domain_scores_gemma":[0.9988382,0.0008533518,0.00009447588,0.00004662527,0.00003918132,0.0001281545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000333668,0.0003411616,0.01357106,0.00008967659,0.000002086282,0.00001748067,0.0000552985,6.376966e-9,0.9544255,0.006778159,0.003098732,0.02158754],"study_design_scores_gemma":[0.0004494046,0.00233252,0.08126769,0.001831139,0.00005579827,0.0001635514,0.0003628256,0.00004541162,0.859709,0.006988922,0.04570311,0.001090648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960901,0.001425802,0.000007446824,0.0008423314,0.0002614196,0.0002848734,0.0002531023,0.0000206022,0.0008143538],"genre_scores_gemma":[0.998868,0.0003235301,0.0004535447,0.0001342677,0.0001200961,0.00001176689,0.0000754319,5.842299e-7,0.00001270159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09471644,"threshold_uncertainty_score":0.2862905,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2005056679","doi":"10.1016/j.femsle.2005.07.030","title":"Modulation of plant ethylene levels by the bacterial enzyme ACC deaminase","year":2005,"lang":"en","type":"review","venue":"FEMS Microbiology Letters","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":854,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ethylene; Enzyme; Enzyme assay; Chemistry; Biochemistry; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.03421505649023925,"gpt":0.2473492984735977,"spread":0.2131342419833585,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003522491,0.0004503261,0.001045572,0.00002820095,0.0001506988,0.00003352593,0.0008096296,0.0005885815,0.0004159365],"category_scores_gemma":[0.00003715511,0.0001465636,0.0004753242,0.0002354138,0.000243344,0.0000619305,0.0001602145,0.0003911231,0.0001190981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009360701,"about_ca_system_score_gemma":0.00002112447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001395602,"about_ca_topic_score_gemma":0.00007601978,"domain_scores_codex":[0.9977169,0.0005456536,0.0006744287,0.000530164,0.00007839558,0.0004544642],"domain_scores_gemma":[0.9985858,0.0005246103,0.000630901,0.0001752874,0.00003064328,0.00005278549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000005937398,0.00002685517,0.000003575452,0.0000805099,0.00008840009,0.00000169141,0.00001784339,6.981948e-8,0.7092211,0.000002191297,0.01615294,0.2743989],"study_design_scores_gemma":[0.0001003068,0.00006177014,0.00008336129,0.0004228174,0.000178997,0.0001077705,0.000004979967,2.382579e-7,0.007356628,0.000001384895,0.9913413,0.0003404667],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1816342,0.8090315,0.00000125946,0.001517278,0.0006669353,0.0007845762,0.006293841,0.00005788585,0.00001253241],"genre_scores_gemma":[0.02341252,0.9500865,0.0001657318,0.002960572,0.002994902,0.0001801837,0.0198582,0.00001986289,0.0003215768],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9751883,"threshold_uncertainty_score":0.5976689,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2511554536","doi":"10.1038/nplants.2016.112","title":"Neglecting legumes has compromised human health and sustainable food production","year":2016,"lang":"en","type":"article","venue":"Nature Plants","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":801,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"FP7 Food, Agriculture and Fisheries, Biotechnology; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Chinese University of Hong Kong; Australian Government; European Commission; University of Leeds; Government of Western Australia; Lee Hysan Foundation","keywords":"Legume; Food security; Sustainable agriculture; Agriculture; Human health; Agronomy; Agroforestry; Business; Livestock; Nitrogen fixation; Natural resource economics; Biology; Economics; Ecology; Environmental health; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01929682899507148,"gpt":0.2339832718012665,"spread":0.214686442806195,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002220875,0.0001184246,0.0001481867,0.00001677005,0.0006538365,0.00007340319,0.0001186173,0.0001585239,0.00004231439],"category_scores_gemma":[0.0001310403,0.00003800855,0.00002918823,0.0001385703,0.00004838148,0.0001656328,0.00005776625,0.0001934597,0.000006664203],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005684468,"about_ca_system_score_gemma":0.0000166858,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001227501,"about_ca_topic_score_gemma":0.0003481491,"domain_scores_codex":[0.9989024,0.00007438856,0.0001336468,0.0003276272,0.000157296,0.000404578],"domain_scores_gemma":[0.999602,0.00008567428,0.0000954383,0.00004907729,0.0000550856,0.0001126983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004735472,0.00006410202,0.01936495,0.00003385002,0.00002780148,0.000004514517,0.0002529577,1.107928e-8,0.9404947,0.0005581866,0.009608054,0.0295435],"study_design_scores_gemma":[0.001502348,0.002407528,0.367622,0.0004558422,0.0000214054,0.0001913284,0.002579924,0.000001743819,0.5612174,0.006258318,0.05681067,0.0009315168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988879,0.0009576039,2.033998e-7,0.009424279,0.0001291406,0.0002504608,0.00001924546,0.0001127673,0.0002273393],"genre_scores_gemma":[0.9984018,0.00001385349,0.00004688726,0.0003249117,0.0003046161,0.000007936527,0.00002412403,0.000001294766,0.0008746407],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3792773,"threshold_uncertainty_score":0.5028847,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2032334566","doi":"10.1038/nature01207","title":"Shoot control of root development and nodulation is mediated by a receptor-like kinase","year":2002,"lang":"en","type":"article","venue":"Nature","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":569,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Science Foundation","keywords":"Biology; Lotus japonicus; Root nodule; Pisum; Symbiosis; Cell biology; Sativum; Organogenesis; Shoot; Nitrogen fixation; Lateral root; Botany; Gene; Arabidopsis; Genetics; Bacteria; Mutant","retraction":null,"screen_n_in":null,"score":{"opus":0.008027515371243757,"gpt":0.1918149842486327,"spread":0.1837874688773889,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000922032,0.00009523489,0.0001278199,0.000008662545,0.00006908835,0.0000158348,0.00009771719,0.0004826301,0.000601949],"category_scores_gemma":[0.00005495898,0.00003767676,0.0000299744,0.0001904455,0.00002131612,0.00005994734,0.00001918433,0.000305758,0.00002738391],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002429823,"about_ca_system_score_gemma":0.000002357532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002034306,"about_ca_topic_score_gemma":0.00006199599,"domain_scores_codex":[0.9992967,0.00003045565,0.0001485583,0.0001850921,0.000202434,0.000136792],"domain_scores_gemma":[0.9996818,0.00008558936,0.00007327431,0.00003232478,0.00006655675,0.00006049293],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002006003,0.00009101702,0.03349886,0.000007948565,0.00003239403,9.366008e-7,0.0002787624,3.382673e-8,0.8610858,0.00001555484,0.07203627,0.03293232],"study_design_scores_gemma":[0.001381323,0.0002628475,0.2222905,0.0000662596,0.00004124909,0.000005419187,0.0001063388,0.0001282074,0.4125319,0.00008606087,0.3625198,0.0005801328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938135,0.002210504,4.116879e-7,0.003489415,0.0000873621,0.0001158752,0.00006773629,0.00003190982,0.0001832495],"genre_scores_gemma":[0.9983855,0.000009123535,0.0001048896,0.0009569564,0.00004287541,0.00000554804,0.00007547925,8.062601e-7,0.0004187487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.448554,"threshold_uncertainty_score":0.6590919,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2622340452","doi":"10.1016/j.tplants.2017.05.004","title":"How Plant Root Exudates Shape the Nitrogen Cycle","year":2017,"lang":"en","type":"review","venue":"Trends in Plant Science","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":527,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre for Global Health Research; University of Toronto; Université Laval","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Nitrogen fixation; Nitrogen cycle; Nitrification; Root (linguistics); Symbiosis; Plant root; Agriculture; Root nodule; Plant roots; Nitrogen; Botany; Agronomy; Ecology; Bacteria; Horticulture","retraction":null,"screen_n_in":null,"score":{"opus":0.09201168304815603,"gpt":0.3087582568887457,"spread":0.2167465738405897,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.001262503,0.0004913586,0.000975561,0.0001417708,0.001047985,0.00107512,0.004437369,0.0002332189,0.0001764023],"category_scores_gemma":[0.0001995423,0.0001387497,0.0003426926,0.001367349,0.0008182077,0.0004461524,0.0005918268,0.0005234765,0.0001030237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001266906,"about_ca_system_score_gemma":0.00008389191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000267299,"about_ca_topic_score_gemma":0.001402504,"domain_scores_codex":[0.9967828,0.0001585688,0.0004187889,0.0009725361,0.0007634715,0.0009037813],"domain_scores_gemma":[0.9983812,0.000471206,0.0005208306,0.0004165356,0.00003625322,0.0001739508],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002503587,0.00003434473,0.0003356239,0.00007681311,0.0000142332,0.00003758875,0.00002901162,3.467991e-8,0.00009755917,0.0001348524,0.0007476752,0.9984897],"study_design_scores_gemma":[0.00005781718,0.00007090448,0.001500015,0.001520081,0.0001020838,0.0001781401,0.0000322193,0.00004617985,0.0001010947,0.0001834122,0.9956413,0.0005667747],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01104492,0.9829928,2.79088e-8,0.0008072732,0.0005489572,0.0003442184,0.001980818,0.000102896,0.002178097],"genre_scores_gemma":[0.03849146,0.95795,0.00004904635,0.00009103649,0.0007681691,0.0001799448,0.001053302,0.000007372606,0.001409677],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.997923,"threshold_uncertainty_score":0.9999619,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3089633091","doi":"10.1038/s41586-020-2778-7","title":"A single bacterial genus maintains root growth in a complex microbiome","year":2020,"lang":"en","type":"article","venue":"Nature","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":518,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Energy; Howard Hughes Medical Institute; Office of Science; National Institutes of Health; National Science Foundation","keywords":"Rhizosphere; Biology; Microbiome; Auxin; Microorganism; Arabidopsis; Rhizobacteria; Arabidopsis thaliana; Botany; Bacteria; Gene; Genetics; Mutant","retraction":null,"screen_n_in":null,"score":{"opus":0.01842303886646725,"gpt":0.2129118560859704,"spread":0.1944888172195031,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006447027,0.0001310821,0.000163963,0.0000110491,0.00005938173,0.00006020084,0.0002959297,0.0005710623,0.001184215],"category_scores_gemma":[0.0001292378,0.00005413666,0.00008067366,0.0005287652,0.00003205168,0.00007355605,0.00009318719,0.0006878889,0.0001422756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005015285,"about_ca_system_score_gemma":0.00000624089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006930988,"about_ca_topic_score_gemma":0.0005380081,"domain_scores_codex":[0.9990962,0.00005988806,0.0001445447,0.0002951155,0.0001275218,0.0002767938],"domain_scores_gemma":[0.9997165,0.00004578512,0.00004578017,0.00003099653,0.00005803884,0.0001029023],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004378333,0.00005830694,0.004692496,0.000005140973,0.000006516545,0.00001804056,0.0001008397,1.93568e-8,0.9848302,0.00006212018,0.009049056,0.001133482],"study_design_scores_gemma":[0.0009441493,0.0006389535,0.4780676,0.00003078861,0.00002098022,0.00002824422,0.0001759484,0.00001689701,0.3666694,0.0004204124,0.1523213,0.0006653748],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850609,0.00009383386,1.398716e-7,0.0139544,0.0001367095,0.0001432202,0.0001217336,0.00007901426,0.000410059],"genre_scores_gemma":[0.9954064,7.597483e-7,0.000167255,0.00353442,0.0006581938,0.000004271963,0.0002004502,0.00000140875,0.00002687861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6181608,"threshold_uncertainty_score":0.9997289,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2016269955","doi":"10.1126/science.1132514","title":"A Cytokinin Perception Mutant Colonized by <i>Rhizobium</i> in the Absence of Nodule Organogenesis","year":2006,"lang":"en","type":"article","venue":"Science","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":506,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Organogenesis; Cell biology; Symbiosis; Mutant; Rhizobium; Rhizobia; Nod factor; Lotus japonicus; Cytokinin; Root nodule; Primordium; Nodule (geology); Regulator; Locus (genetics); Botany; Gene; Genetics; Auxin; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.006802895376328808,"gpt":0.2013990145198402,"spread":0.1945961191435114,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009041218,0.00009230625,0.0001162716,0.00001988844,0.0002044571,0.0000589849,0.0007659686,0.00004376076,0.0001276843],"category_scores_gemma":[0.0000789614,0.0000314809,0.00004300998,0.001787029,0.0004374867,0.0001791444,0.00006285252,0.00006779702,0.00003529711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004993339,"about_ca_system_score_gemma":0.00002709246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00131419,"about_ca_topic_score_gemma":0.0005801746,"domain_scores_codex":[0.9986169,0.00007502129,0.0002119132,0.0003067968,0.0004904957,0.0002989033],"domain_scores_gemma":[0.9995747,0.0001277472,0.00009278543,0.00009198251,0.0000815496,0.00003128498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000005792078,0.00006800135,0.02521286,0.000001231974,3.801227e-7,0.000001181926,0.0001310738,3.231727e-7,0.9733068,0.00005387859,0.0002897697,0.0009286966],"study_design_scores_gemma":[0.0001027892,0.0000905609,0.5263922,0.00001003395,0.000002714982,0.000009192829,0.0004344216,0.00002724213,0.4720324,0.0002424164,0.0005481381,0.0001078479],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980261,0.00005199402,0.0000010647,0.001129846,0.00005378573,0.0001612991,0.00002930719,0.00002262522,0.0005240019],"genre_scores_gemma":[0.9994791,0.00000479199,0.0001235669,0.000280393,0.00004080649,0.00001233263,0.000007095586,5.638234e-7,0.00005131004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5012744,"threshold_uncertainty_score":0.1986671,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2068173223","doi":"10.1139/w01-062","title":"Characterization of plant growth promoting rhizobacteria isolated from polluted soils and containing 1-aminocyclopropane-1-carboxylate deaminase","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":464,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Rhizobacteria; Biology; Pseudomonas; Pseudomonas putida; Pseudomonas fluorescens; Bacteria; Brassica; Alcaligenes; Botany; Siderophore; Microbiology; Rhizosphere","retraction":null,"screen_n_in":null,"score":{"opus":0.009316378662570943,"gpt":0.1727785998881791,"spread":0.1634622212256082,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002141613,0.0001469421,0.0003396869,0.00006676807,0.0001124648,0.00003352559,0.0001989049,0.0001737025,0.0001671936],"category_scores_gemma":[0.000080761,0.00007270854,0.00006257679,0.0001834906,0.0001055008,0.0001198743,0.00002022214,0.0001630728,0.000003116216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005748768,"about_ca_system_score_gemma":0.00009290313,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007252425,"about_ca_topic_score_gemma":0.01663215,"domain_scores_codex":[0.9988459,0.0001463341,0.0004699695,0.0001733124,0.00003395066,0.0003305063],"domain_scores_gemma":[0.9989481,0.00008402545,0.0004931437,0.00003776213,0.0001712707,0.0002656761],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007217386,0.000009947385,0.04612031,0.000003456412,0.00005232821,0.00009357548,0.0003209447,1.741577e-8,0.9512446,0.00000702831,0.00001143482,0.002064165],"study_design_scores_gemma":[0.0008338497,0.001203733,0.480657,0.0002491398,0.0000986904,0.002242046,0.0002715876,0.00002467989,0.5123415,0.0001096303,0.001578655,0.0003894685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998247,0.000179284,0.000001966312,0.0005804993,0.000193766,0.0001055683,0.0006689617,0.000007828632,0.00001518479],"genre_scores_gemma":[0.999281,0.00002515972,0.00005661643,0.0001600905,0.0001468517,8.329849e-7,0.0003144196,0.000002343373,0.00001263191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4389031,"threshold_uncertainty_score":0.9993584,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2804233573","doi":"10.1126/science.aat1743","title":"Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis","year":2018,"lang":"en","type":"article","venue":"Science","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":462,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Universidad Nacional de Quilmes; Consejo Nacional de Investigaciones Científicas y Técnicas; Deutsche Forschungsgemeinschaft; U.S. Department of Agriculture; Agence Nationale de la Recherche; European Research Council; National Science Foundation","keywords":"Symbiosis; Phylogenomics; Biology; Genome; Nitrogen fixation; Root nodule; Evolutionary biology; Endosymbiosis; Phylogenetics; Bacteria; Genetics; Gene; Clade","retraction":null,"screen_n_in":null,"score":{"opus":0.01647610945089566,"gpt":0.2285148737965249,"spread":0.2120387643456292,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007863598,0.000161842,0.0002183976,0.00004253844,0.0005325016,0.00008787668,0.0010162,0.00007187973,0.0002190474],"category_scores_gemma":[0.0004773342,0.00007085212,0.000104788,0.001460233,0.001253463,0.0003063094,0.0002760752,0.00008369279,0.0001533054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006253825,"about_ca_system_score_gemma":0.00004055233,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002199252,"about_ca_topic_score_gemma":0.0003020426,"domain_scores_codex":[0.9980811,0.00004595121,0.0003154302,0.0005328948,0.0004743215,0.0005502595],"domain_scores_gemma":[0.9989044,0.0001894908,0.00019198,0.0001781309,0.0003742913,0.0001617016],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000004907382,0.0000375357,0.2909729,0.000003130427,0.000004081357,4.046614e-7,0.00007493,6.694926e-8,0.7067078,0.00009806253,0.00005438028,0.002041698],"study_design_scores_gemma":[0.00007523864,0.0001647973,0.2220916,0.00002147154,0.000008462679,0.000006188896,0.00009632437,0.00003976496,0.7758397,0.001280024,0.0002134827,0.000162928],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981889,0.0000946384,0.000003103087,0.0002187964,0.0002554926,0.0001633857,0.0000466211,0.0000670255,0.0009620932],"genre_scores_gemma":[0.9984028,0.000003459005,0.001069627,0.0001620907,0.000288381,0.000006843603,0.00000397723,0.000001593037,0.00006124428],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06913187,"threshold_uncertainty_score":0.4618437,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2154701173","doi":"10.1111/j.1365-313x.2012.05093.x","title":"The genome of flax (<i>Linum usitatissimum</i>) assembled <i>de novo</i> from short shotgun sequence reads","year":2012,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":440,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; University of British Columbia; University of Manitoba; Plant Biotechnology Institute; University of Alberta","funders":"","keywords":"Contig; Linum; Genome; Sequence assembly; Shotgun; Shotgun sequencing; Biology; Genetics; Gene; Whole genome sequencing; Reference genome; Computational biology; Proteome; Expressed sequence tag; Transcriptome; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.04206556416161341,"gpt":0.2417574998785412,"spread":0.1996919357169278,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001432529,0.000147288,0.0001854243,0.000007444224,0.0006334106,0.00011819,0.0007860016,0.00008051559,0.0002021049],"category_scores_gemma":[0.00009027477,0.00003899874,0.0001280024,0.0001717616,0.00008567747,0.0001730542,0.00008976105,0.0003885251,0.00003698095],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005566479,"about_ca_system_score_gemma":0.00002657976,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001872031,"about_ca_topic_score_gemma":0.0001679077,"domain_scores_codex":[0.9983681,0.0002762212,0.0003405679,0.0001170598,0.0003753973,0.0005226725],"domain_scores_gemma":[0.9984485,0.001015099,0.0001830111,0.0001060907,0.0000715489,0.0001757641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004913739,0.00003622222,0.0178194,9.843862e-7,0.00005945641,0.000008719237,0.0004003161,0.000001545466,0.9780093,0.0001118541,0.0007807153,0.002722353],"study_design_scores_gemma":[0.0004782468,0.0004510902,0.5598586,0.0001459694,0.0003707733,0.003326517,0.00213044,0.0001686705,0.3865765,0.005673234,0.03997258,0.0008473106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995773,0.001103645,0.000008571078,0.001920267,0.0002905361,0.00009682595,0.0002259828,0.00002135763,0.0005598206],"genre_scores_gemma":[0.9981371,0.0002302004,0.0002596865,0.0003121457,0.0009274808,0.000003927488,0.00002633263,0.000001865438,0.0001012156],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5914328,"threshold_uncertainty_score":0.4871746,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1510706323","doi":"10.12705/622.8","title":"Legume phylogeny and classification in the 21st century: Progress, prospects and lessons for other species–rich clades","year":2013,"lang":"en","type":"article","venue":"Taxon","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":425,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"","keywords":"Phylogenetics; Clade; Phylogenetic tree; Biology; Taxon; Evolutionary biology; Ecology; Zoology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03476712620437784,"gpt":0.2414782943357632,"spread":0.2067111681313854,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001586916,0.0001024826,0.0001016749,0.000009407158,0.0001370487,0.0001532129,0.0001387536,0.0000728394,0.00005943119],"category_scores_gemma":[0.00002882265,0.00003399338,0.0000233058,0.0001673793,0.0001176582,0.0001170033,0.00002898793,0.00007232049,0.00001500138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001530182,"about_ca_system_score_gemma":0.000003011878,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001040001,"about_ca_topic_score_gemma":0.000327641,"domain_scores_codex":[0.999281,0.00005014316,0.0001134705,0.000236725,0.0001075018,0.0002111083],"domain_scores_gemma":[0.9997063,0.0001046194,0.00006477452,0.00005524099,0.00003389388,0.00003515189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002091249,0.0001907807,0.2016708,0.00003233071,0.00001629505,5.850731e-7,0.0005874753,1.022877e-8,0.6776438,0.02769118,0.002824217,0.08932162],"study_design_scores_gemma":[0.0001445508,0.0001096439,0.9649083,0.00001338723,0.000008163839,0.000003306628,0.001265921,0.00001575397,0.003497085,0.0009886832,0.02892958,0.0001156264],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9852696,0.0007631565,1.95148e-7,0.01147795,0.00003008079,0.0009361432,0.00002212741,0.00002740965,0.001473312],"genre_scores_gemma":[0.9989261,0.0000628081,0.0001605074,0.000227788,0.0001446403,0.0003022976,0.00001348469,0.000001292281,0.0001610815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7632375,"threshold_uncertainty_score":0.1477435,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090254587","doi":"10.1111/j.1469-8137.2008.02657.x","title":"Rhizosphere bacteria containing 1‐aminocyclopropane‐1‐carboxylate deaminase increase yield of plants grown in drying soil via both local and systemic hormone signalling","year":2008,"lang":"en","type":"article","venue":"New Phytologist","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":420,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Biotechnology and Biological Sciences Research Council; Department for Environment, Food and Rural Affairs, UK Government","keywords":"Rhizosphere; Xylem; Bacteria; Biology; Microbial inoculant; Abscisic acid; Horticulture; Agronomy; Chemistry; Botany; Inoculation; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02081315388159698,"gpt":0.2037941261380899,"spread":0.182980972256493,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002474982,0.0002744812,0.000533008,0.00002577835,0.000167689,0.00002857859,0.0002663553,0.0002257776,0.00005280855],"category_scores_gemma":[0.00008544057,0.0001379579,0.00007920904,0.0002251445,0.000248764,0.0001676324,0.0001190379,0.0002475595,0.000009416334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006539578,"about_ca_system_score_gemma":0.00003682206,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01572928,"about_ca_topic_score_gemma":0.002429908,"domain_scores_codex":[0.9982135,0.0001205071,0.0005128467,0.0004684306,0.0002156958,0.0004690258],"domain_scores_gemma":[0.9990435,0.00037981,0.0002610783,0.00009318691,0.00003452839,0.0001879357],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002937302,0.00006315892,0.09267174,0.00002906707,0.00002344889,0.0002078442,0.0002092775,0.00000935195,0.8976822,0.00001664183,0.00005462754,0.008738933],"study_design_scores_gemma":[0.002059805,0.001511252,0.6262142,0.0007790343,0.00006778739,0.001301463,0.001693337,0.0009164741,0.3639369,0.0003458216,0.00005431888,0.001119637],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970396,0.002219944,0.00004000616,0.00007951404,0.00006893808,0.0002283825,0.00002593956,0.00007902704,0.0002186915],"genre_scores_gemma":[0.9993817,0.0001618499,0.0001690352,0.00007844676,0.0001119132,0.00001326277,0.00003114757,0.000003897779,0.00004877202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5337453,"threshold_uncertainty_score":0.9908251,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2104225529","doi":"10.1016/j.apsoil.2008.04.005","title":"Alleviation of drought stress in the common bean (Phaseolus vulgaris L.) by co-inoculation with Paenibacillus polymyxa and Rhizobium tropici","year":2008,"lang":"en","type":"article","venue":"Applied Soil Ecology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":418,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phaseolus; Biology; Paenibacillus polymyxa; Rhizobium; Inoculation; Shoot; Horticulture; Legume; Abscisic acid; Botany; Agronomy; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.00870855041032801,"gpt":0.1971209441763089,"spread":0.1884123937659809,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001455169,0.0001282239,0.0002275481,0.00001655297,0.0001751794,0.00001163191,0.0001713599,0.0001427211,0.00003944285],"category_scores_gemma":[0.000008519838,0.00004994752,0.00002705135,0.0001998925,0.0001731493,0.00005331763,0.00002780144,0.0001258666,0.000005926417],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003062563,"about_ca_system_score_gemma":0.00001024448,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001071054,"about_ca_topic_score_gemma":0.006505094,"domain_scores_codex":[0.9990255,0.0001158261,0.0002375304,0.0002352398,0.0001595308,0.0002264355],"domain_scores_gemma":[0.9994479,0.00026786,0.0001523878,0.00007327931,0.00002416945,0.0000343469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002082288,0.0004376842,0.7634827,0.00001409964,0.00004763607,0.00001214873,0.00163106,0.000007153845,0.2251972,0.001402306,0.001285206,0.006274557],"study_design_scores_gemma":[0.000934776,0.0005911961,0.9479939,0.000005080796,0.00002707839,0.00002902832,0.0005515454,0.00004934264,0.04869238,0.0002877216,0.0006324573,0.0002055376],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971066,0.00005748032,0.000001737658,0.001064733,0.00002346077,0.0002954587,0.0000312559,0.00002151154,0.001397775],"genre_scores_gemma":[0.9992232,0.00002007873,0.00002164389,0.0004036667,0.00005219238,0.00004664059,0.0001938906,0.000001517204,0.00003718292],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1845111,"threshold_uncertainty_score":0.3629995,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2904320346","doi":"10.1007/s00253-018-9556-6","title":"Plant health: feedback effect of root exudates-rhizobiome interactions","year":2018,"lang":"en","type":"review","venue":"Applied Microbiology and Biotechnology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":409,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"North-West University; National Research Foundation","keywords":"Rhizosphere; Biology; Plant growth; Microbiome; Plant root; Host (biology); Nutrient; Plant species; Plant roots; Botany; Bacteria; Ecology; Horticulture","retraction":null,"screen_n_in":null,"score":{"opus":0.01769643083179487,"gpt":0.2568523953884975,"spread":0.2391559645567026,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004394893,0.0005755358,0.002164633,0.0001395911,0.0002246806,0.00001532292,0.0006323827,0.001704745,0.0001536266],"category_scores_gemma":[0.00003482293,0.0002171712,0.0003075183,0.0005851493,0.0008637035,0.00002506983,0.0004491486,0.0007035488,0.0002534017],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006861451,"about_ca_system_score_gemma":0.00003385097,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007292368,"about_ca_topic_score_gemma":0.000301312,"domain_scores_codex":[0.9974647,0.0002580605,0.0007726321,0.0008682897,0.00003810688,0.0005982632],"domain_scores_gemma":[0.9982684,0.0006734065,0.0007350821,0.0002187856,0.00002435203,0.00007995831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004785339,0.00006941632,0.00001133184,0.001703996,0.0003146167,0.000003097507,0.00001182472,5.76677e-10,0.1968194,0.0004503447,0.003425519,0.7971426],"study_design_scores_gemma":[0.0001663746,0.001084148,0.000006634608,0.0009550945,0.0002200874,0.0005457328,0.0000119957,3.640963e-8,0.03755658,0.00004549109,0.9590315,0.0003763831],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03402177,0.9623846,5.086434e-7,0.000533072,0.0003753582,0.00109406,0.001273058,0.0002253701,0.00009219452],"genre_scores_gemma":[0.01004078,0.9866403,0.0001064854,0.0001129056,0.0002261451,0.0001427798,0.002649026,0.000008189479,0.00007333999],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9556059,"threshold_uncertainty_score":0.9995912,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2138171082","doi":"10.1139/w08-081","title":"Enhanced plant nutrient use efficiency with PGPR and AMF in an integrated nutrient management system","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":402,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"Agricultural Research Service; Santen; Auburn University","keywords":"Microbial inoculant; Agronomy; Nutrient; Fertilizer; Tillage; Silage; Rhizobacteria; Biology; Horticulture; Inoculation; Rhizosphere","retraction":null,"screen_n_in":null,"score":{"opus":0.01161372696746165,"gpt":0.1718744796014862,"spread":0.1602607526340245,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001921969,0.0001527674,0.0002753587,0.0001137572,0.0001522392,0.00003453501,0.0002480932,0.0001033483,0.00002982531],"category_scores_gemma":[0.00001335525,0.00006107868,0.00004088714,0.0003265128,0.0001807855,0.0001142849,0.00001610309,0.0001862791,0.000005022197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002307472,"about_ca_system_score_gemma":0.00009515686,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003668657,"about_ca_topic_score_gemma":0.0471564,"domain_scores_codex":[0.998852,0.0001382039,0.0003412247,0.0002236736,0.00005239717,0.0003925328],"domain_scores_gemma":[0.9992476,0.00005391515,0.0001746312,0.00005673104,0.0001174197,0.0003497679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003263996,0.0001863261,0.06632105,0.00003326021,0.00009693747,0.00265483,0.001347794,0.000009743595,0.9244188,0.001147741,0.001039841,0.002417265],"study_design_scores_gemma":[0.007658611,0.01277661,0.4474857,0.002196866,0.000234803,0.0329774,0.01717595,0.00006257234,0.4007983,0.00007929684,0.07610496,0.002448926],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990413,0.0002737404,0.00002320706,0.0001998956,0.0001407067,0.0001873261,0.00009515612,0.000008851531,0.00002977403],"genre_scores_gemma":[0.9995061,0.00002763407,0.0002089087,0.0001316983,0.0000414629,0.000003615361,0.00003815132,0.000001604859,0.00004088177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5236205,"threshold_uncertainty_score":0.9702305,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2052212080","doi":"10.1073/pnas.0508502103","title":"The partitioned <i>Rhizobium etli</i> genome: Genetic and metabolic redundancy in seven interacting replicons","year":2006,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":375,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University","funders":"","keywords":"Biology; Plasmid; Synteny; Genetics; Genome; Replicon; Gene; Horizontal gene transfer","retraction":null,"screen_n_in":null,"score":{"opus":0.02009692175840224,"gpt":0.2480192072666081,"spread":0.2279222855082059,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001052232,0.00007997105,0.0001174369,0.00002731696,0.0003954517,0.00006460372,0.0005278678,0.00005197087,0.000008122245],"category_scores_gemma":[0.0003441212,0.00002722445,0.00005353296,0.0007585062,0.0005044977,0.0002573761,0.0001377073,0.0001300272,9.867069e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000163726,"about_ca_system_score_gemma":0.000008009941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009645848,"about_ca_topic_score_gemma":0.000007569154,"domain_scores_codex":[0.9987444,0.00001543129,0.0003391949,0.0002276129,0.0004931745,0.0001802232],"domain_scores_gemma":[0.9991991,0.0003183472,0.0003386544,0.000004985796,0.0001176028,0.00002134369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006286855,0.00002442041,0.04094268,0.000005469419,0.000004855751,5.577322e-9,0.00006933647,0.000003918717,0.9504958,0.00756346,0.0001567186,0.0007270596],"study_design_scores_gemma":[0.0000616923,0.00002120691,0.7860948,0.00003185916,0.00000709178,0.000009802349,0.0002128399,0.00005995057,0.1846896,0.0280308,0.0007126566,0.00006765826],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989444,0.0005620514,1.407308e-8,0.008076241,0.00001497485,0.0001438519,0.00001074343,0.000009654883,0.001738446],"genre_scores_gemma":[0.9993488,0.00003834385,0.00022596,0.0001765968,0.0001046643,0.00001534966,2.155609e-7,6.235903e-7,0.00008943558],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7658061,"threshold_uncertainty_score":0.3041535,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2079070241","doi":"10.1073/pnas.0606924103","title":"<i>Burkholderia xenovorans</i> LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility","year":2006,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":351,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Institute of Environmental Health Sciences; U.S. Department of Energy; Natural Environment Research Council; College of Engineering, Michigan State University; Lawrence Livermore National Laboratory; Universität Konstanz; Michigan State University","keywords":"Biology; Replicon; Genome; Genetics; Burkholderia; Burkholderia cepacia complex; Gene; Whole genome sequencing; Genome evolution; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.04504616117968115,"gpt":0.2657744643270522,"spread":0.220728303147371,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001324409,0.0001475826,0.0002155747,0.00003646691,0.0003782495,0.00005135149,0.001072015,0.0001272687,0.00005587095],"category_scores_gemma":[0.0003232043,0.00005825113,0.0001875901,0.0008654238,0.0006864597,0.0003964878,0.0001220139,0.0001152944,0.000002285001],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003721825,"about_ca_system_score_gemma":0.00001604291,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009124803,"about_ca_topic_score_gemma":0.000003030859,"domain_scores_codex":[0.9980298,0.000009364691,0.0004397865,0.0004213727,0.0008222612,0.0002774043],"domain_scores_gemma":[0.9989016,0.0002159065,0.0004556396,0.000007209261,0.0003757336,0.00004392388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000196318,0.00008580695,0.008995802,0.00002343098,0.000009967092,2.002664e-9,0.00003450163,0.000001729426,0.9855312,0.004776048,0.0003698222,0.0001520276],"study_design_scores_gemma":[0.0003049921,0.00008841985,0.35071,0.00003013416,0.00002238934,0.000002320641,0.0001098088,0.0005204764,0.6300293,0.01697186,0.001041928,0.0001682773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931868,0.0001004034,6.022806e-7,0.005238687,0.00002308986,0.0004545786,0.0001544024,0.00003256579,0.0008089201],"genre_scores_gemma":[0.997492,0.000002973345,0.001758745,0.0003960557,0.0001668472,0.00003716689,0.000001778437,0.000001243008,0.0001431539],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3555019,"threshold_uncertainty_score":0.2909227,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2098435548","doi":"10.1007/s00253-008-1567-2","title":"Use of nitrogen-fixing bacteria as biofertiliser for non-legumes: prospects and challenges","year":2008,"lang":"en","type":"review","venue":"Applied Microbiology and Biotechnology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":339,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Council of Scientific and Industrial Research, India","keywords":"Bacteria; Biology; Nitrogen fixation; Host (biology); Symbiotic bacteria; Agronomy; Population; Flora (microbiology); Nitrogen; Microorganism; Botany; Ecology; Symbiosis; Chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.04357141505713539,"gpt":0.2382353808819858,"spread":0.1946639658248505,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001325053,0.000604771,0.001824678,0.0001119028,0.0002172119,0.0000213773,0.0003844022,0.002669989,0.00002131077],"category_scores_gemma":[0.0000603947,0.000263954,0.0002495711,0.0002657058,0.0009000338,0.00005276376,0.0003918212,0.0004105309,0.00001762841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000267726,"about_ca_system_score_gemma":0.00003315395,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002222186,"about_ca_topic_score_gemma":0.00003702038,"domain_scores_codex":[0.9976832,0.00006516667,0.0006155318,0.001024977,0.00003634095,0.0005747459],"domain_scores_gemma":[0.9986652,0.000535293,0.0004771793,0.0001942607,0.00005253309,0.00007558183],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004880082,0.00007337256,0.00001744297,0.001578048,0.0002481665,0.000004346599,0.0000301371,5.514713e-10,0.4585844,0.001039592,0.0001210813,0.5382546],"study_design_scores_gemma":[0.000261166,0.0005476651,0.00003921948,0.0007264992,0.0002926508,0.0007777556,0.00006181357,1.017594e-7,0.07580923,0.0004106766,0.920423,0.0006502626],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1424595,0.8550941,3.568441e-7,0.0003890636,0.00009761246,0.001478303,0.0003422474,0.0001182599,0.00002054768],"genre_scores_gemma":[0.01039121,0.988049,0.0007306922,0.00008533699,0.00008958511,0.0002507158,0.0003678873,0.00000955268,0.00002602249],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9203019,"threshold_uncertainty_score":0.9999813,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2090701624","doi":"10.1007/s00374-012-0737-7","title":"Tricalcium phosphate is inappropriate as a universal selection factor for isolating and testing phosphate-solubilizing bacteria that enhance plant growth: a proposal for an alternative procedure","year":2012,"lang":"en","type":"article","venue":"Biology and Fertility of Soils","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":337,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Université Laval","keywords":"Phosphate; Phosphate solubilizing bacteria; Phosphorite; Soil water; Bacteria; Phosphorus; Biology; Plant growth; Alkali soil; Chemistry; Biotechnology; Rhizosphere; Food science; Rhizobacteria; Botany; Biochemistry; Ecology; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.04559642734723011,"gpt":0.2763564853691082,"spread":0.2307600580218781,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003875958,0.0001811548,0.0002789887,0.00001542648,0.0002974437,0.00002685355,0.0001051465,0.0001961492,0.00001278145],"category_scores_gemma":[0.0003459096,0.00008755688,0.00005456536,0.0001173281,0.000140082,0.0003474969,0.00005337865,0.00009196628,4.990591e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002601022,"about_ca_system_score_gemma":0.00002578585,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004735235,"about_ca_topic_score_gemma":0.00007992886,"domain_scores_codex":[0.998838,0.00008346957,0.0002263306,0.0003970921,0.00005696793,0.0003981376],"domain_scores_gemma":[0.9990556,0.0004279749,0.0002186073,0.0000352011,0.0001456305,0.0001170393],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008940154,0.0001129064,0.2342274,0.00008160676,0.00004072611,5.466172e-8,0.001037613,1.513835e-8,0.7505336,0.0001683798,0.000004186633,0.01289945],"study_design_scores_gemma":[0.0003687022,0.001361369,0.3324787,0.00003688769,0.00003236326,0.000004626786,0.0002807181,0.0006482181,0.6625361,0.002040731,0.00002273311,0.0001888099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982716,0.0002939437,0.00008906476,0.0002155804,0.00009434731,0.0007591113,0.000216692,0.00004671515,0.0000129404],"genre_scores_gemma":[0.9962777,0.00001003117,0.003410053,0.00007719777,0.0001132755,0.00005560312,0.00004217651,0.00000242863,0.00001152233],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09825131,"threshold_uncertainty_score":0.3570466,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2106420457","doi":"10.1007/s00114-004-0566-0","title":"Gluconic acid production and phosphate solubilization by the plant growth-promoting bacterium Azospirillum spp.","year":2004,"lang":"en","type":"article","venue":"Die Naturwissenschaften","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":336,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"McGill University","keywords":"Gluconic acid; Phosphate; Bacteria; Biochemistry; Chemistry; Azospirillum brasilense; Calcium; Food science; Microbial inoculant; Microbiology; Biology; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.009514938459232652,"gpt":0.1924537433958584,"spread":0.1829388049366258,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003374204,0.0002142075,0.000175478,0.00001226581,0.0004105639,0.0001163141,0.0002143493,0.0001540671,0.00002420276],"category_scores_gemma":[0.0002871978,0.00007902952,0.00006928147,0.0002703705,0.0001075202,0.0002516528,0.0001038237,0.0002428431,0.00003192453],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000624419,"about_ca_system_score_gemma":0.000009596591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000340085,"about_ca_topic_score_gemma":0.0003021189,"domain_scores_codex":[0.9985821,0.00006574502,0.0002368068,0.0004836791,0.0002477766,0.0003838736],"domain_scores_gemma":[0.9995005,0.00005380857,0.0001347069,0.00009908047,0.0001178649,0.00009403835],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000281432,0.00004981371,0.001998861,0.00001313659,0.0000240703,0.000004782897,0.0002555106,2.712946e-7,0.993417,0.0001134453,0.0005495161,0.003545398],"study_design_scores_gemma":[0.0002000028,0.0001503579,0.0298558,0.00005956368,0.00003416383,0.00006530321,0.0002171773,0.00001820864,0.9665648,0.0009430956,0.001590095,0.0003014807],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.983193,0.002649322,9.218724e-7,0.01317771,0.0003496907,0.0003478081,0.00005528038,0.0001476045,0.000078669],"genre_scores_gemma":[0.9986662,0.000144373,0.00007364508,0.0004967107,0.0003337151,0.00002087174,0.0001479517,0.000003881798,0.0001126114],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02785694,"threshold_uncertainty_score":0.322273,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2098616705","doi":"10.1105/tpc.106.046938","title":"NUCLEOPORIN85 Is Required for Calcium Spiking, Fungal and Bacterial Symbioses, and Seed Production in <i>Lotus japonicus</i>","year":2007,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":334,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Lotus japonicus; Biology; Symbiosis; Hypha; Mutant; Botany; Lotus; Root hair; Root nodule; Rhizobia; Inoculation; Glomeromycota; Mycorrhiza; Gene; Horticulture; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02183188040950806,"gpt":0.2136226132429947,"spread":0.1917907328334867,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005561254,0.0001273598,0.0001390274,0.00001319324,0.0001681953,0.00005415512,0.0001170068,0.0000887927,0.00002250748],"category_scores_gemma":[0.00002854045,0.00004794216,0.00003864317,0.0001221329,0.00006570775,0.00008741615,0.00005885947,0.00008849568,0.000005208551],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002152781,"about_ca_system_score_gemma":0.000005160384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004709358,"about_ca_topic_score_gemma":0.0007049064,"domain_scores_codex":[0.99907,0.00003050732,0.0001872914,0.0002917745,0.0001058216,0.000314545],"domain_scores_gemma":[0.9996167,0.0001642909,0.00007824648,0.00005753002,0.00002136559,0.00006189445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002518465,0.0000414353,0.005034398,0.00001316817,0.00000617728,0.000003255077,0.0003229193,1.572873e-8,0.9922574,0.00003734119,0.0006542167,0.001377832],"study_design_scores_gemma":[0.0004843986,0.0002695945,0.1564445,0.00002969624,0.00003652156,0.00006827502,0.0003845476,0.00001216278,0.8335533,0.000219959,0.00824317,0.0002539327],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975702,0.0001703877,2.464793e-7,0.001126299,0.0003012623,0.0003895823,0.0001177175,0.00003654253,0.000287721],"genre_scores_gemma":[0.9989674,0.0000213697,0.0000554581,0.0001663,0.0004457877,0.000008380985,0.00005120458,0.000001765761,0.0002823321],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1587041,"threshold_uncertainty_score":0.1955024,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2146289413","doi":"10.1105/tpc.105.032714","title":"Seven <i>Lotus japonicus</i> Genes Required for Transcriptional Reprogramming of the Root during Fungal and Bacterial Symbiosis","year":2005,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":320,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Deutsche Forschungsgemeinschaft; Gatsby Charitable Foundation","keywords":"Lotus japonicus; Biology; Mutant; Gene; Genetics; Complementation; Transcriptome; Phenotype; Gene expression; Molecular biology","retraction":null,"screen_n_in":null,"score":{"opus":0.01573316752064399,"gpt":0.1868439454545634,"spread":0.1711107779339194,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002421518,0.0001161885,0.0001340323,0.000005291126,0.0003071629,0.00004087998,0.0002821187,0.00006604869,0.00004187144],"category_scores_gemma":[0.00001400623,0.00003609769,0.00015254,0.00009319043,0.0000766161,0.0000713632,0.0000594145,0.00006816034,0.000003909392],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001658266,"about_ca_system_score_gemma":0.000007132762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007968183,"about_ca_topic_score_gemma":0.0003677965,"domain_scores_codex":[0.9991315,0.00005844076,0.0002055076,0.0002108037,0.0001510136,0.0002427453],"domain_scores_gemma":[0.9995721,0.0001754934,0.000103171,0.00008279377,0.00002674233,0.00003969743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001357224,0.00004203582,0.001794497,0.00001470226,0.00001872105,2.759816e-7,0.0002024631,6.10692e-7,0.9957337,0.00004441516,0.00009265701,0.001920246],"study_design_scores_gemma":[0.000371734,0.00008662017,0.05094911,0.00002751975,0.00007360585,0.00003861451,0.0001397419,0.00002557117,0.9417575,0.00005599562,0.006324423,0.0001495832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969748,0.0004215146,2.758585e-7,0.001668153,0.0001397667,0.000318826,0.0003709165,0.00002981885,0.00007588548],"genre_scores_gemma":[0.9991055,0.00001468294,0.0001091342,0.00005120734,0.0004102398,0.00002593561,0.00004393556,0.000001722496,0.000237692],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05397617,"threshold_uncertainty_score":0.236248,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2899343599","doi":"10.1038/s41477-018-0286-7","title":"Whole-genome landscape of Medicago truncatula symbiotic genes","year":2018,"lang":"en","type":"article","venue":"Nature Plants","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":313,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Agence Nationale de la Recherche","keywords":"Biology; Medicago truncatula; Genome; Gene; Genetics; Epigenetics; Endosymbiosis; Computational biology; Transposable element; Symbiosis; Plastid","retraction":null,"screen_n_in":null,"score":{"opus":0.009113247152824104,"gpt":0.2169531219949399,"spread":0.2078398748421158,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001760304,0.0001406953,0.0002118707,0.00002116461,0.0001038655,0.00001972642,0.0004021603,0.0003767071,0.0005739516],"category_scores_gemma":[0.0000673691,0.0000512284,0.00007722268,0.000264101,0.0001044711,0.00005949624,0.00006863954,0.0002455492,0.0001898617],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000106648,"about_ca_system_score_gemma":0.00001071164,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004204866,"about_ca_topic_score_gemma":0.0002045186,"domain_scores_codex":[0.9988765,0.00004568868,0.0001922823,0.0002716983,0.000332904,0.000280923],"domain_scores_gemma":[0.9994882,0.0001295712,0.0001032346,0.00008743806,0.00008741049,0.0001040956],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003295935,0.00005171379,0.01192244,0.000007758812,0.00003307454,0.000006313141,0.00007425847,1.907263e-8,0.9794835,0.0000475526,0.003104192,0.005236165],"study_design_scores_gemma":[0.0004932588,0.0006279476,0.5402838,0.00009900309,0.00006021965,0.00008176837,0.0002421964,0.00002432384,0.3822777,0.0004716102,0.07483105,0.000507118],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994556,0.001701441,1.819848e-7,0.0008414303,0.0003661841,0.0001024267,0.0003697317,0.00006292001,0.001999732],"genre_scores_gemma":[0.9982839,0.00002216365,0.0001000279,0.0003888758,0.000721255,0.00000231407,0.0002520219,0.000001371896,0.0002280947],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5972059,"threshold_uncertainty_score":0.6284367,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2152253857","doi":"10.1073/pnas.161294698","title":"The complete sequence of the 1,683-kb pSymB megaplasmid from the N <sub>2</sub> -fixing endosymbiont <i>Sinorhizobium meliloti</i>","year":2001,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":307,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"McMaster University","keywords":"Sinorhizobium meliloti; Biology; Gene; Replicon; Sinorhizobium; Genetics; Insertion sequence; Coding region; Genome; Bacteria; Rhizobiaceae; Transposable element; Symbiosis; Mutant","retraction":null,"screen_n_in":null,"score":{"opus":0.04687408210569163,"gpt":0.2489086008850969,"spread":0.2020345187794052,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.002065776,0.0002004812,0.0002358838,0.00002057368,0.001406512,0.0001081221,0.003449121,0.0001172202,0.00001779184],"category_scores_gemma":[0.0009235119,0.00005305091,0.0002644363,0.001547968,0.002137785,0.0004165106,0.0005027783,0.0003494806,0.000005105704],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005244448,"about_ca_system_score_gemma":0.00003403393,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001846642,"about_ca_topic_score_gemma":0.0000166577,"domain_scores_codex":[0.9966222,0.0000598406,0.0005937057,0.0003982753,0.001959946,0.0003660432],"domain_scores_gemma":[0.9970162,0.00149972,0.0009592458,0.00002735023,0.0004459707,0.00005151952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001961042,0.00003111969,0.01792632,0.000004968378,0.00002410796,8.689763e-9,0.0001239773,0.000002688234,0.9716263,0.008397431,0.0009687448,0.0008747455],"study_design_scores_gemma":[0.00009710348,0.00004603579,0.1354212,0.0001002361,0.00002697401,0.00001018488,0.0004084106,0.0000850444,0.8412484,0.02152368,0.0009208524,0.0001119242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9707786,0.0003383884,4.846889e-8,0.02667284,0.00009725634,0.0003413699,0.000140233,0.00002056057,0.001610711],"genre_scores_gemma":[0.9984949,0.00009436673,0.00008204809,0.001028187,0.0002293494,0.00001736068,8.476723e-7,0.000001844156,0.00005106081],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1303779,"threshold_uncertainty_score":0.9998935,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2745153408","doi":"10.1128/mmbr.00019-17","title":"The Divided Bacterial Genome: Structure, Function, and Evolution","year":2017,"lang":"en","type":"review","venue":"Microbiology and Molecular Biology Reviews","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":298,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Genome; Genetics; Bacterial genome size; Genome project; Genome evolution; Evolutionary biology; Computational biology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03114960192105664,"gpt":0.2784513643598788,"spread":0.2473017624388222,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006733445,0.0005191715,0.001531005,0.0000226407,0.0009775332,0.0001016152,0.0005536095,0.0009266846,0.00005708415],"category_scores_gemma":[0.0002226715,0.0001593172,0.0003579037,0.00009702401,0.0007481148,0.00003863122,0.0004023656,0.00040655,0.00004196228],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003262357,"about_ca_system_score_gemma":0.00002912912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002260282,"about_ca_topic_score_gemma":0.0001421507,"domain_scores_codex":[0.9968433,0.001265542,0.0006447964,0.0007680934,0.00002256295,0.000455709],"domain_scores_gemma":[0.9986668,0.0002140701,0.0007115179,0.0002743184,0.00004471617,0.00008861025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000009949775,0.000007956446,0.00006424762,0.0003402839,0.0001694701,0.000001586868,0.000002452413,1.870585e-10,0.2122746,0.0006207288,0.0002369336,0.7862718],"study_design_scores_gemma":[0.00008280351,0.0001525874,0.0002442461,0.0003569431,0.0004932905,0.0002081446,0.000001152933,9.449943e-9,0.00003717671,0.0007969083,0.9973059,0.0003207795],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003062925,0.9947953,0.000006490547,0.0001247321,0.0005533991,0.001056781,0.0003492174,0.00002656838,0.00002463878],"genre_scores_gemma":[0.0007713364,0.9970246,0.00004447432,0.0001367932,0.0003119132,0.00009723182,0.001514546,0.000004149324,0.00009497315],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.997069,"threshold_uncertainty_score":0.7518494,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1976404078","doi":"10.3109/07388551.2010.513327","title":"Bio-encapsulation of microbial cells for targeted agricultural delivery","year":2010,"lang":"en","type":"review","venue":"Critical Reviews in Biotechnology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":291,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Institut National de la Recherche Scientifique","funders":"","keywords":"Biotechnology; Biochemical engineering; Context (archaeology); Microbial inoculant; Agriculture; Biofertilizer; Biology; Engineering; Agronomy; Bacteria; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.03874869757952493,"gpt":0.2991421090219158,"spread":0.2603934114423909,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005939274,0.0005133644,0.002444818,0.0001069611,0.00008240192,0.00002343038,0.0008902846,0.002555213,0.0001603191],"category_scores_gemma":[0.001756682,0.0001924091,0.0009553586,0.00104009,0.0004575036,0.00008010413,0.0002011815,0.0009529122,0.0001252384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000856261,"about_ca_system_score_gemma":0.00003218664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002821173,"about_ca_topic_score_gemma":0.00007783118,"domain_scores_codex":[0.9967406,0.0002704234,0.001503768,0.0007461596,0.0001342888,0.0006048032],"domain_scores_gemma":[0.9980823,0.001037707,0.0004326582,0.0002194091,0.0001383348,0.00008958276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002580163,0.00008418323,6.784613e-7,0.002647334,0.000009760721,9.744565e-7,0.000002449539,1.604567e-9,0.2165693,0.001207522,0.0006468527,0.7788283],"study_design_scores_gemma":[0.00007489665,0.0001683817,0.00001472923,0.004134461,0.0002501913,0.0000222988,0.000008214271,5.247776e-7,0.01832133,0.0002942532,0.9762859,0.0004248189],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002092414,0.9941563,0.000004029295,0.0005200303,0.0007474368,0.002006626,0.000359341,0.0000857402,0.00002810514],"genre_scores_gemma":[0.0004182748,0.9960415,0.002457413,0.00005557723,0.0003210811,0.0002852258,0.0003885042,0.000005303154,0.0000270778],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.975639,"threshold_uncertainty_score":0.9987397,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999044492","doi":"10.1046/j.1365-313x.2000.00799.x","title":"Short root mutant of <i>Lotus japonicus</i> with a dramatically altered symbiotic phenotype","year":2000,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":291,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Emergent BioSolutions (Canada)","funders":"College of Engineering, Michigan State University; York University; Michigan State University; U.S. Department of Energy; National Science Foundation","keywords":"Lotus japonicus; Mutant; Biology; Root nodule; Symbiosis; Root hair; Lateral root; Meristem; Cytokinin; Auxin; Organogenesis; Elongation; Wild type; Cell biology; Shoot; Botany; Arabidopsis; Genetics; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01309753565247573,"gpt":0.1890364444498181,"spread":0.1759389087973423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003675945,0.0001473135,0.0002252246,0.000009276002,0.0002456917,0.00008453368,0.0004645557,0.00005549669,0.001263053],"category_scores_gemma":[0.00001940235,0.00003809361,0.00009520033,0.0002054354,0.0001033523,0.00008207161,0.00002592703,0.000288873,0.00006543972],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002301397,"about_ca_system_score_gemma":0.00001965372,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004456929,"about_ca_topic_score_gemma":0.0001044877,"domain_scores_codex":[0.9987068,0.0001201768,0.0003188305,0.0001393543,0.0003793586,0.0003355274],"domain_scores_gemma":[0.9994208,0.0002141628,0.00009951905,0.00008206697,0.00005760676,0.0001258453],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005907469,0.0003155725,0.007982488,0.00001300735,0.0002378848,0.0000939547,0.0005505545,0.00001639345,0.9480521,0.000341333,0.0009765599,0.0408294],"study_design_scores_gemma":[0.002456301,0.005932377,0.6285715,0.001313201,0.001136395,0.02043656,0.001396984,0.0009408088,0.3222325,0.006806688,0.006671001,0.002105596],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966416,0.00008768168,0.000001602026,0.001230471,0.00005784845,0.000123641,0.00005898456,0.00002646589,0.00177171],"genre_scores_gemma":[0.9993484,0.00002081356,0.00008844797,0.000171817,0.0002492511,0.000001822505,0.00001114436,0.000001708902,0.0001066101],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6258196,"threshold_uncertainty_score":0.9996499,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2116183852","doi":"10.1007/1-4020-4152-7_1","title":"Ecology of Plant Growth Promoting Rhizobacteria","year":2006,"lang":"en","type":"book-chapter","venue":"","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":281,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"","keywords":"Rhizobia; Rhizosphere; Rhizobacteria; Biology; Ecology; Biodiversity; Rhizobium; Symbiosis; Mycorrhiza; Mutualism (biology); Ecosystem; Botany; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01218741849594406,"gpt":0.1796842639402258,"spread":0.1674968454442817,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001204787,0.0002496738,0.0004031804,0.00001784848,0.00006012793,0.00001846962,0.0002862519,0.0004096346,0.003466702],"category_scores_gemma":[0.0000166724,0.00008603254,0.0001824365,0.00003035929,0.00007289841,0.00003927565,0.0001128337,0.0001632467,0.000132549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003236883,"about_ca_system_score_gemma":0.00001063376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003065083,"about_ca_topic_score_gemma":0.0006154147,"domain_scores_codex":[0.9988372,0.00001841413,0.0003857978,0.0003430035,0.0001730568,0.0002425394],"domain_scores_gemma":[0.9993524,0.0001403235,0.0003044494,0.00005711541,0.00009136081,0.00005438217],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005216697,0.0001706495,0.007047087,0.0001454966,0.0002455395,0.00005605426,0.00005001603,2.104926e-8,0.8383989,0.1057293,0.04120122,0.006903565],"study_design_scores_gemma":[0.001068364,0.004189196,0.1426896,0.001039663,0.0006828764,0.0003282827,0.00004722413,0.00001487208,0.411299,0.09580901,0.3379185,0.004913327],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.2797759,0.00005450866,7.628294e-8,0.0004645405,0.0002034404,0.0003353934,0.0005627676,0.0001296253,0.7184737],"genre_scores_gemma":[0.6528997,0.00001555102,0.0001942827,0.000198734,0.000656317,0.00001094549,0.001167032,0.000005449986,0.344852],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.4270999,"threshold_uncertainty_score":0.9974443,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165619622","doi":"10.1101/gr.111955.110","title":"Localized hypermutation and associated gene losses in legume chloroplast genomes","year":2010,"lang":"en","type":"article","venue":"Genome Research","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":281,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"National Institutes of Health; European Commission; Lilly Endowment; Science Foundation Ireland; Eli Lilly and Company","keywords":"Biology; Genetics; Genome; Nuclear gene; Lathyrus; Gene; Chloroplast DNA; Pseudogene; Evolutionary biology; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.03629353239319,"gpt":0.2858671004297403,"spread":0.2495735680365503,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001394839,0.0001225051,0.0001845104,0.00007681788,0.0002597058,0.0001462072,0.0002738872,0.0001743134,0.0005317025],"category_scores_gemma":[0.0003591744,0.00005579966,0.00003970273,0.0008649448,0.0002079844,0.0001379164,0.000167035,0.0005105668,0.0001495565],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007123916,"about_ca_system_score_gemma":0.00002899689,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008475616,"about_ca_topic_score_gemma":0.00375128,"domain_scores_codex":[0.9981319,0.00021406,0.0002126206,0.0003868949,0.0004652588,0.0005892523],"domain_scores_gemma":[0.9991251,0.000421278,0.00004340411,0.00007848997,0.0001825604,0.0001491812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002096132,0.00007305459,0.05236927,0.000004643359,0.00001006555,0.00001455169,0.0001354367,2.981403e-7,0.9388019,0.00006356589,0.00002741602,0.008478788],"study_design_scores_gemma":[0.0004213025,0.0002001944,0.946011,0.000008582942,0.000004825625,0.00001854783,0.000265722,0.00005856912,0.04741544,0.0009803341,0.004379201,0.0002362521],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974927,0.0004634054,2.234344e-7,0.001013799,0.00005890068,0.0002749791,0.00004092961,0.00004548874,0.0006095489],"genre_scores_gemma":[0.9990681,0.00009017047,0.0001107936,0.00004224137,0.0001563682,0.00003560799,0.00009178159,0.000002426741,0.0004025338],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8936418,"threshold_uncertainty_score":0.5821769,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2082676268","doi":"10.1094/mpmi.2002.15.3.233","title":"<i>Azoarcus</i> Grass Endophytes Contribute Fixed Nitrogen to the Plant in an Unculturable State","year":2002,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":280,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Bundesministerium für Bildung und Forschung","keywords":"Biology; Nitrogen fixation; Nitrogenase; Endophyte; Diazotroph; Rhizosphere; Botany; Strain (injury); Inoculation; Symbiosis; Bacteria; Microbiology; Horticulture; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.01843459646759236,"gpt":0.2098291805941961,"spread":0.1913945841266038,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001742199,0.0002723409,0.000252287,0.00004739365,0.0003292464,0.000246644,0.0005524856,0.0000749836,0.0004265589],"category_scores_gemma":[0.00007677239,0.0001122002,0.0001496863,0.0005287343,0.00004059372,0.0002673604,0.0001136867,0.0003670314,0.0005156576],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001040897,"about_ca_system_score_gemma":0.000006510901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001256908,"about_ca_topic_score_gemma":0.01393864,"domain_scores_codex":[0.9981104,0.000237192,0.0003646276,0.0004709589,0.0002234422,0.0005934276],"domain_scores_gemma":[0.9991943,0.0002316641,0.0001099833,0.000182142,0.00009672802,0.000185129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000035655,0.0001915918,0.002931423,0.00000246285,0.0000435796,0.00010374,0.0003083513,0.00003624525,0.9827901,0.00003602388,0.01236483,0.001156071],"study_design_scores_gemma":[0.0003798735,0.0002489156,0.003985123,0.000080263,0.00004423936,0.0003348777,0.0004117104,0.0002695138,0.9205371,0.0002220726,0.07295742,0.0005289571],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909747,0.0002122358,0.00001204702,0.005491995,0.0002970847,0.0004941506,0.002092853,0.0001122531,0.0003126356],"genre_scores_gemma":[0.9965696,0.00002121371,0.0001178776,0.002269923,0.0001075599,0.0001062599,0.0004965336,0.000004624017,0.0003064054],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06225299,"threshold_uncertainty_score":0.7778089,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2063754943","doi":"10.1128/aem.69.8.4396-4402.2003","title":"<i>Rhizobium leguminosarum</i> Biovar viciae 1-Aminocyclopropane-1-Carboxylate Deaminase Promotes Nodulation of Pea Plants","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":275,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhizobium leguminosarum; Pisum; Biology; Sativum; Ethylene; Rhizobiaceae; Mutant; Rhizobium; Rhizobia; Nitrogen fixation; Microbiology; Biochemistry; Gene; Botany; Symbiosis; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.00537285993411022,"gpt":0.1543679495053163,"spread":0.1489950895712061,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000128893,0.0002183652,0.0002642047,0.00001777295,0.0001231869,0.00001018183,0.0001245947,0.0001870431,0.0001748481],"category_scores_gemma":[0.000005154842,0.0001069595,0.00005792264,0.00007152145,0.0002578988,0.00004320982,0.0000748097,0.0001024493,0.00005621871],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002790691,"about_ca_system_score_gemma":0.000003423337,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005861555,"about_ca_topic_score_gemma":0.00002228412,"domain_scores_codex":[0.9988651,0.0000659746,0.000274112,0.000411563,0.00005573237,0.0003275237],"domain_scores_gemma":[0.9996372,0.00007287391,0.0001376539,0.00007901621,0.000003399862,0.00006986778],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000226372,0.0001197695,0.01962085,0.000007085584,0.00002431428,0.000002299795,0.00006654061,1.624864e-7,0.9757404,0.000125614,0.00003119757,0.00423914],"study_design_scores_gemma":[0.0003244833,0.0001741206,0.06561168,0.000008310913,0.00002425559,0.00008120866,0.0002386348,0.000001572147,0.9305702,0.0002173015,0.002492483,0.0002557175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983697,0.0002967049,9.753848e-7,0.00006436087,0.00006661138,0.0002807739,0.0002276082,0.00002814609,0.0006651192],"genre_scores_gemma":[0.9990255,0.00005259087,0.0001877909,0.0001579987,0.00004173116,0.00001491855,0.0004625635,0.000002974424,0.00005397489],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04599084,"threshold_uncertainty_score":0.4361681,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2141770923","doi":"10.1139/w11-044","title":"Inducing salt tolerance in mung bean through coinoculation with rhizobia and plant-growth-promoting rhizobacteria containing 1-aminocyclopropane-1-carboxylate deaminase","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":257,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Rhizobacteria; Axenic; Pseudomonas fluorescens; Biology; Rhizobia; Rhizosphere; Shoot; Horticulture; Biofertilizer; Inoculation; Rhizobium; Botany; Bacteria; Nitrogen fixation","retraction":null,"screen_n_in":null,"score":{"opus":0.01840541995231676,"gpt":0.1828323360133093,"spread":0.1644269160609926,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003783025,0.0001881218,0.0003456271,0.0000673852,0.0001614492,0.00003946266,0.000221137,0.0001705311,0.00008144807],"category_scores_gemma":[0.00006834028,0.00009144018,0.00004462452,0.0002015892,0.0001405923,0.000244998,0.00002229344,0.0003090491,0.000003001852],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001136722,"about_ca_system_score_gemma":0.000109864,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.02178979,"about_ca_topic_score_gemma":0.117718,"domain_scores_codex":[0.9986067,0.0001609677,0.0004709823,0.0002482057,0.00004119946,0.0004719279],"domain_scores_gemma":[0.9991354,0.00009056128,0.0003814074,0.00004920165,0.0001262067,0.0002172151],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008526476,0.00001213035,0.2650965,0.000008679552,0.00002718295,0.0002940703,0.002526476,3.093586e-7,0.7303867,0.00005096783,0.00002069357,0.001490979],"study_design_scores_gemma":[0.001554876,0.001970916,0.7772724,0.0007420629,0.00007638984,0.005675004,0.001851826,0.00001955375,0.2089413,0.0003771254,0.0007667856,0.0007517305],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989149,0.0004184114,0.000001815607,0.0001645074,0.0001538999,0.0001330106,0.00006142833,0.000008626242,0.0001434329],"genre_scores_gemma":[0.9987126,0.00001105322,0.0009092095,0.0002061417,0.0001085627,0.000001965884,0.00004078845,0.000003541231,0.000006131503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5214454,"threshold_uncertainty_score":0.9847242,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2160229877","doi":"10.4141/p05-098","title":"Nitrogen nutrition of soybean in Brazil: Contributions of biological N<sub>2</sub> fixation and N fertilizer to grain yield","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Plant Science","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":257,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Sowing; Fertilizer; Inoculation; Bradyrhizobium; Nitrogen fixation; Cultivar; Grain yield; Biology; Agronomy; Oxisol; Nitrogen; Animal science; Horticulture; Chemistry; Rhizobium; Soil water","retraction":null,"screen_n_in":null,"score":{"opus":0.01330826915573259,"gpt":0.2095530075124858,"spread":0.1962447383567532,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000681163,0.0000707269,0.0001764796,0.0001475256,0.0001161391,0.00002818986,0.0002336707,0.0000627393,0.00001508456],"category_scores_gemma":[0.0004523917,0.00003352234,0.00004698,0.0007436485,0.0002798514,0.0001582182,0.00001473894,0.0000878499,0.000001153893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007871556,"about_ca_system_score_gemma":0.0001470361,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005690062,"about_ca_topic_score_gemma":0.04062817,"domain_scores_codex":[0.9990299,0.00004368301,0.0003531153,0.0001322939,0.0001842869,0.0002567735],"domain_scores_gemma":[0.9991732,0.0001339798,0.0001906395,0.00003103276,0.0002147527,0.0002564023],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001573807,0.00002577138,0.06126888,0.00000252598,0.000001659775,0.000008545054,0.00003862548,0.000001175285,0.9374722,0.0003329247,0.0003712603,0.0004607018],"study_design_scores_gemma":[0.0001277066,0.0002266681,0.3509283,0.00008954579,0.000004600374,0.00005150455,0.0001000472,0.00001007478,0.6465718,0.001730312,0.00009100696,0.00006847814],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979692,0.0001592369,0.000005431418,0.00121929,0.00006108358,0.0001246043,0.0004281301,0.000002334289,0.00003073762],"genre_scores_gemma":[0.9997702,0.000004858312,0.00008270235,0.00007889345,0.00004691954,0.000001794183,0.00001302251,3.892301e-7,0.000001268491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2909004,"threshold_uncertainty_score":0.9768779,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1999092590","doi":"10.1371/journal.pone.0099168","title":"New Insights into 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase Phylogeny, Evolution and Ecological Significance","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":253,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Fundação para a Ciência e a Tecnologia; University of Waterloo","keywords":"Biology; Horizontal gene transfer; Phylogenetics; Proteobacteria; AMP deaminase; Phylogenetic tree; Gene; Genetics; Phylum; Enzyme; Evolutionary biology; Biochemistry; Adenosine deaminase","retraction":null,"screen_n_in":null,"score":{"opus":0.01970032842773223,"gpt":0.1872715999399792,"spread":0.1675712715122469,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001553684,0.0001997748,0.0002814237,0.00001865048,0.0002224807,0.00006196085,0.0002476767,0.000174992,0.0001707995],"category_scores_gemma":[0.0001848358,0.00008452784,0.00005504779,0.0002636924,0.00009197707,0.0001332387,0.0001245723,0.0001668326,0.0001358197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000730369,"about_ca_system_score_gemma":0.00001213323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005847422,"about_ca_topic_score_gemma":0.0005933335,"domain_scores_codex":[0.9985195,0.0001437082,0.0002281113,0.0004885304,0.0002935917,0.0003265063],"domain_scores_gemma":[0.9992718,0.0002204181,0.0001021236,0.00009721136,0.0000718913,0.0002365395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002235048,0.000350489,0.01611375,0.00001488246,0.00003670244,0.000003078813,0.00007329933,1.047144e-7,0.9723931,0.0005376221,0.00007407914,0.01038054],"study_design_scores_gemma":[0.0003395269,0.0008846496,0.7006148,0.00006070614,0.0001116166,0.000003269113,0.00005477258,0.0002945254,0.2868773,0.009775477,0.000524836,0.0004585459],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977825,0.0003990348,0.00001455003,0.0006496866,0.00004201028,0.0002852379,0.000003488326,0.0001422341,0.0006813067],"genre_scores_gemma":[0.9971981,0.00003176805,0.001720872,0.0002072866,0.0004180751,0.00002815686,0.00001861142,0.000002163316,0.0003749682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6855158,"threshold_uncertainty_score":0.3446945,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2080177252","doi":"10.1093/molbev/msu296","title":"Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes","year":2014,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":251,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute on Drug Abuse; Ministry of Innovation and Advanced Education; Alberta Innovates; Alberta Innovates - Technology Futures; National Institutes of Health; National Science Foundation","keywords":"Biology; Clade; Phylogenetic tree; Fabaceae; Phylogenetics; Rhizobia; Polyploid; Evolutionary biology; Bradyrhizobium; Lineage (genetic); Botany; Symbiosis; Genome; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.006107917643650696,"gpt":0.2124834545802194,"spread":0.2063755369365687,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003744643,0.00006341534,0.00009038614,0.0000156072,0.00008211876,0.000005453733,0.0000645699,0.00008654252,0.000002444326],"category_scores_gemma":[0.0001579456,0.00002687944,0.00002284594,0.0001280646,0.00005155713,0.00004351418,0.00003085752,0.00006347207,9.942479e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006370309,"about_ca_system_score_gemma":0.000001435772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007421235,"about_ca_topic_score_gemma":0.000129828,"domain_scores_codex":[0.9993021,0.0002343772,0.0001370378,0.0001522539,0.00005042498,0.0001238467],"domain_scores_gemma":[0.9997094,0.0001518737,0.00007396357,0.00003420518,0.00001464407,0.00001589339],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00000440652,0.000007925501,0.5555205,0.000001656185,0.000002587651,9.313411e-8,0.00008234621,8.38984e-7,0.435404,0.0007326422,3.470222e-7,0.008242636],"study_design_scores_gemma":[0.0001513279,0.0001160408,0.9906582,0.000009786675,0.000005686625,0.00000310067,0.00006049014,0.0006685763,0.00552561,0.002734447,0.000009671623,0.00005704169],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991462,0.0002898528,0.0001271867,0.0002699653,0.00002549864,0.0001005427,0.000004282359,0.000009535537,0.00002698872],"genre_scores_gemma":[0.9997088,0.000002750261,0.0001559841,0.00006647487,0.00003613663,0.000005219019,0.00002261278,5.593332e-7,0.000001414874],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4351377,"threshold_uncertainty_score":0.1121874,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149893864","doi":"10.1139/w07-130","title":"Hydroxamate siderophores produced by Streptomyces acidiscabies E13 bind nickel and promote growth in cowpea (Vigna unguiculata L.) under nickel stress","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":250,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"Max-Planck-Gesellschaft","keywords":"Siderophore; Vigna; Nickel; Chemistry; Bacteria; Biology; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.01130798295619449,"gpt":0.1869603676058574,"spread":0.175652384649663,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002514015,0.0002560719,0.0004375477,0.0001045159,0.0002418136,0.00005124078,0.0004451819,0.0002278533,0.0001422446],"category_scores_gemma":[0.0001236429,0.0001198719,0.00009786012,0.0003064227,0.0004789039,0.0001725166,0.0000517469,0.0003268955,0.00001355798],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001130915,"about_ca_system_score_gemma":0.0002050317,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.009006566,"about_ca_topic_score_gemma":0.04488137,"domain_scores_codex":[0.9982255,0.0002057168,0.0005238719,0.0003678595,0.00007589666,0.0006011727],"domain_scores_gemma":[0.9989645,0.0001063869,0.0003013623,0.000081345,0.000156842,0.0003895501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001748266,0.00003343011,0.1044069,0.000009324871,0.00005015205,0.0001257624,0.0002625751,9.704352e-7,0.8916086,0.00001627621,0.003170764,0.0002977702],"study_design_scores_gemma":[0.0008548853,0.0006363041,0.1239692,0.0001620286,0.00004374957,0.002103355,0.0007503045,0.000002362611,0.868821,0.0003022924,0.001774411,0.0005801065],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925189,0.003763467,1.298728e-7,0.002982291,0.0001702394,0.0001853459,0.0003402705,0.000009758577,0.0000296093],"genre_scores_gemma":[0.999226,0.0001515579,0.00005106136,0.0002463894,0.0001141795,0.000003050235,0.00006996401,0.000004096807,0.0001336423],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0358748,"threshold_uncertainty_score":0.9975926,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}