{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":2667,"total_is_capped":false,"direct_labels_cover":8,"predictions_cover":2667,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"2b6af09d75b9","filters":{"topic":"Microbial Community Ecology and Physiology"}},"results":[{"id":"W2108718991","doi":"10.1128/aem.01541-09","title":"Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":21757,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; University of British Columbia","funders":"Alfred P. Sloan Foundation; National Science Foundation","keywords":"Laptop; Software; Pyrosequencing; Computer science; Metagenomics; Data mining; Computational biology; Biology; Software engineering; Genetics; Gene; Programming language; Operating system","retraction":null,"screen_n_in":null,"score":{"opus":0.02640740679992318,"gpt":0.2161884023350541,"spread":0.1897809955351309,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0005457187,0.0003480659,0.0005265763,0.00005791284,0.001720424,0.00007220337,0.0007234368,0.0002866135,0.0005420402],"category_scores_gemma":[0.00001095275,0.0003601653,0.00004581454,0.00006699577,0.001005354,0.0001942133,0.001860597,0.0007686744,0.00004252332],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000116484,"about_ca_system_score_gemma":0.00000766711,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007727425,"about_ca_topic_score_gemma":0.001233151,"domain_scores_codex":[0.9984224,0.0002434063,0.00036846,0.0003614786,0.00003156294,0.0005727056],"domain_scores_gemma":[0.9989842,0.0002649575,0.0001588963,0.0004750567,0.000002823441,0.0001141129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002512818,0.0002919062,0.01975383,0.000015814,0.00004918893,9.56704e-7,0.00356324,0.0002284621,0.9655053,0.0001753375,0.001866572,0.008298136],"study_design_scores_gemma":[0.04287301,0.00872196,0.4342075,0.000347601,0.0009877654,0.004092324,0.07115395,0.002439148,0.1598679,0.02880782,0.2368381,0.009662941],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970928,0.00006804337,0.0009647532,0.0001127795,0.00007501467,0.0007247939,0.00008310247,0.00005665053,0.0008220207],"genre_scores_gemma":[0.9932225,0.00008719375,0.002965853,0.002101468,0.00003381713,0.00003010847,0.001405741,0.00002819062,0.000125116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8056374,"threshold_uncertainty_score":0.999885,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113601822","doi":"10.1126/science.1093857","title":"Environmental Genome Shotgun Sequencing of the Sargasso Sea","year":2004,"lang":"en","type":"article","venue":"Science","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":4369,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mantra Energy Alternatives (Canada)","funders":"","keywords":"Shotgun sequencing; Biology; Sargasso sea; Metagenomics; Genome; Abundance (ecology); Seawater; Shotgun; Relative species abundance; Evolutionary biology; Ecology; Gene; Genetics; Oceanography","retraction":null,"screen_n_in":null,"score":{"opus":0.009036949367583038,"gpt":0.1997113384669746,"spread":0.1906743890993916,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003896433,0.00006604144,0.00007462432,0.00001668347,0.0004764311,0.000006494738,0.0009370663,0.00003498436,0.001844543],"category_scores_gemma":[0.0000270147,0.00004757598,0.00003604768,0.0003011313,0.002637411,0.0001592726,0.0006927111,0.0001482732,0.0002677299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003710055,"about_ca_system_score_gemma":0.00005793187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00020208,"about_ca_topic_score_gemma":0.0003576575,"domain_scores_codex":[0.9992399,0.00004812807,0.0001089556,0.0001800833,0.0001743275,0.0002486058],"domain_scores_gemma":[0.9994901,0.00001954558,0.00006225078,0.0003789165,0.000002003407,0.00004719849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000002062402,0.00002443551,0.01529759,7.882032e-7,9.474481e-7,4.512755e-7,0.0005511564,0.003778456,0.9800892,0.0001249412,0.00001460247,0.0001153287],"study_design_scores_gemma":[0.0001614036,0.00006565236,0.8499883,0.000004426185,0.000004395409,0.00001916125,0.0001651007,0.00003346306,0.142262,0.0053476,0.001836555,0.0001118623],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943783,0.00001358417,0.00002738029,0.0001701288,0.0001537365,0.00009027268,0.000007674897,0.000007337962,0.005151606],"genre_scores_gemma":[0.9991547,0.000005540133,0.0003057564,0.0004248068,0.000008068448,0.000001524432,0.000001080565,0.000002768511,0.00009572489],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8378272,"threshold_uncertainty_score":0.9990679,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2520355709","doi":"10.1126/science.aaf4507","title":"Decoupling function and taxonomy in the global ocean microbiome","year":2016,"lang":"en","type":"article","venue":"Science","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":3533,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Air Force Office of Scientific Research; Natural Sciences and Engineering Research Council of Canada","keywords":"Decoupling (probability); Taxonomy (biology); Microbiome; Function (biology); Biology; Computational biology; Evolutionary biology; Ecology; Bioinformatics; Engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.01339548941426622,"gpt":0.2194797942432305,"spread":0.2060843048289643,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006214151,0.00004225519,0.0000390887,0.00001504154,0.0002451634,0.00001457487,0.0003532652,0.00002341229,0.0004045169],"category_scores_gemma":[0.00002824341,0.00002310692,0.00000762987,0.0003136333,0.001102219,0.0001950909,0.0002035013,0.00004739172,0.0001494043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006649654,"about_ca_system_score_gemma":0.00001241484,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007422615,"about_ca_topic_score_gemma":0.0006826028,"domain_scores_codex":[0.9995232,0.00004126906,0.00005985373,0.0001525846,0.00004657977,0.0001765416],"domain_scores_gemma":[0.9997424,0.00005574783,0.00002134803,0.0001541376,0.000002577339,0.0000237256],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000175417,0.00003976539,0.6997913,0.000001169677,8.495632e-7,9.879267e-7,0.0001533917,0.00002077599,0.2899238,0.0008061384,0.001049361,0.008194936],"study_design_scores_gemma":[0.0001466972,0.00005162631,0.9762411,0.000003915878,0.000001396752,0.00001318704,0.00005983287,0.00002113481,0.0004317909,0.006393552,0.01657467,0.00006107296],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971906,0.00001220947,0.0001797656,0.0004467772,0.0001146727,0.00008226377,0.000001654382,0.000005926989,0.001966131],"genre_scores_gemma":[0.9992552,0.00000499546,0.0001222605,0.0005713686,0.000007332723,0.00000225479,2.963115e-7,7.147521e-7,0.00003558797],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.289492,"threshold_uncertainty_score":0.4429176,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2766358903","doi":"10.1038/nature24621","title":"A communal catalogue reveals Earth’s multiscale microbial diversity","year":2017,"lang":"en","type":"review","venue":"Nature","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2899,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Acadia University; University of Toronto; Dalhousie University; University of British Columbia; Environment and Climate Change Canada; University of Waterloo; University of Northern British Columbia; University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Australian Research Council; Natural Environment Research Council; John Templeton Foundation; National Oceanic and Atmospheric Administration; Sight Research UK; Mississippi State University; Tula Foundation; National Institute of Dental and Craniofacial Research; Lawrence Foundation; NOAA's Atlantic Oceanographic and Meteorological Laboratory; Northern Gulf Institute; W. M. Keck Foundation; Argonne National Laboratory; U.S. Department of Energy; Lundbeckfonden; National Science Foundation","keywords":"Diversity (politics); Earth (classical element); Astrobiology; Earth science; Geography; Evolutionary biology; Biology; Geology; Physics; Sociology; Anthropology; Astronomy","retraction":null,"screen_n_in":null,"score":{"opus":0.05012961885259418,"gpt":0.3239211397149031,"spread":0.2737915208623088,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0003786382,0.0003634469,0.00114807,0.00004332135,0.001671745,0.00002930753,0.002343345,0.004384834,0.003938158],"category_scores_gemma":[0.00009870806,0.0003136273,0.0004289781,0.00008523211,0.0005690667,0.000115334,0.005383463,0.00769282,0.002629466],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001224757,"about_ca_system_score_gemma":0.00003418897,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008384304,"about_ca_topic_score_gemma":0.007153773,"domain_scores_codex":[0.9982243,0.0006515533,0.0002561892,0.0003832393,0.0001089087,0.0003758542],"domain_scores_gemma":[0.9980763,0.0001994166,0.0003662818,0.001252122,0.000009649067,0.00009626342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003021341,0.0002558027,0.0004259211,0.002089782,0.0002059049,0.0000806989,0.0003905253,0.000001540987,0.0000851639,0.00005477354,0.4612011,0.5351785],"study_design_scores_gemma":[0.0001414938,0.00002969157,0.0008456121,0.000609162,0.0001693886,0.00006822553,0.000002133362,2.267083e-7,0.000001368364,0.000102269,0.9977179,0.0003125083],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004034484,0.992188,8.352864e-7,0.00006455101,0.00079569,0.0005343037,0.0007730969,0.00003942397,0.00520061],"genre_scores_gemma":[0.0009587829,0.9925382,0.0001780503,0.0005319909,0.0001416362,0.000009614322,0.002059268,0.00002414429,0.003558338],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.5365168,"threshold_uncertainty_score":0.9999316,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2132548846","doi":"10.1186/1471-2105-13-31","title":"PANDAseq: paired-end assembler for illumina sequences","year":2012,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2221,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Ontario","keywords":"Amplicon; Computer science; Sequence (biology); Error detection and correction; k-mer; Amplicon sequencing; Sequence assembly; Computational biology; DNA sequencing; Biology; Genetics; Algorithm; DNA; 16S ribosomal RNA; Polymerase chain reaction; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03929258653023519,"gpt":0.2637107171785696,"spread":0.2244181306483344,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004521625,0.0001088532,0.0001333017,0.00001926313,0.0002547201,0.00001292735,0.0002425482,0.0001199068,0.002768635],"category_scores_gemma":[0.00006869195,0.00009035718,0.00006172842,0.00008238534,0.0002322694,0.0004377715,0.0001592288,0.00008162004,0.001045357],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005627611,"about_ca_system_score_gemma":0.00001621319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004740276,"about_ca_topic_score_gemma":0.000287877,"domain_scores_codex":[0.9992252,0.00005508672,0.0002218603,0.00005741331,0.0000684823,0.0003719473],"domain_scores_gemma":[0.9993553,0.0002170951,0.0001008008,0.0002309808,0.000006682732,0.00008917871],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002164227,0.0007774482,0.5860749,0.0005997251,0.0001014743,7.375145e-7,0.02198276,0.00204185,0.01637383,0.004773208,0.3408138,0.02624388],"study_design_scores_gemma":[0.001712412,0.0007426052,0.2585676,0.00004065657,0.00009889065,0.00007507234,0.004213726,0.07457469,0.005212689,0.004660578,0.6487635,0.001337521],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9446518,0.00003598182,0.02057108,0.0001339736,0.000593851,0.0005420264,0.00005960488,0.00008571318,0.03332596],"genre_scores_gemma":[0.8885947,0.00001492932,0.1093696,0.001010532,0.00008647506,0.00003476553,0.0001119779,0.000009893317,0.0007671366],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3275073,"threshold_uncertainty_score":0.9997324,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2754579667","doi":"10.1038/nbt.3935","title":"Shotgun metagenomics, from sampling to analysis","year":2017,"lang":"en","type":"review","venue":"Nature Biotechnology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2155,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Ministero dell’Istruzione, dell’Università e della Ricerca; European Commission; Government of Ontario; University of Aberdeen; Fondazione Cassa Di Risparmio Di Trento E Rovereto; Rural and Environment Science and Analytical Services Division","keywords":"Metagenomics; Shotgun; Computational biology; Sampling (signal processing); Shotgun sequencing; Biology; Computer science; Genetics; Genome; Gene; Computer vision","retraction":null,"screen_n_in":null,"score":{"opus":0.08343572408685573,"gpt":0.3874849121203827,"spread":0.304049188033527,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0002847256,0.000474057,0.002355362,0.0004583503,0.0004212714,0.00003234334,0.003066439,0.006215335,0.01197995],"category_scores_gemma":[0.0003430441,0.0004128399,0.0007150301,0.0007522213,0.0003393955,0.00004532999,0.002397961,0.003625959,0.003245684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002706423,"about_ca_system_score_gemma":0.00003976564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004917423,"about_ca_topic_score_gemma":0.004820735,"domain_scores_codex":[0.9978559,0.0002495329,0.0004394468,0.0008964526,0.00008370155,0.0004749926],"domain_scores_gemma":[0.9966924,0.0003023406,0.0004566928,0.002442827,0.000006154376,0.00009963331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000008151291,0.00005135264,0.00001785254,0.0001307845,0.001904894,0.000015539,0.0000274856,0.00002461107,0.0001581887,0.0003673135,0.008450096,0.9888437],"study_design_scores_gemma":[0.00003947002,0.00003512627,0.00006197599,0.0001297691,0.002256645,0.000005712634,0.000002236064,0.000002470286,0.00002491365,0.0004849837,0.9965679,0.0003888111],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001135651,0.9960747,0.0001583574,0.000444147,0.0004941246,0.0004865492,0.0009112942,0.0001335034,0.00118374],"genre_scores_gemma":[0.0001669917,0.992639,0.004220878,0.0004875542,0.0001030753,0.00004259815,0.001981334,0.00003739899,0.0003211712],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9884549,"threshold_uncertainty_score":0.9998323,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2093830129","doi":"10.1371/journal.pbio.0050077","title":"The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific","year":2007,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2103,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Bedford Institute of Oceanography","funders":"Biological and Environmental Research; Natural Environment Research Council; Smithsonian Tropical Research Institute; National Park Service; Office of Science; Gordon and Betty Moore Foundation; University of Illinois at Urbana-Champaign; Princeton University; Universidad de Costa Rica; U.S. Department of Energy; Sight Research UK; U.S. Department of State; Smithsonian Institution","keywords":"Biology; Metagenomics; Evolutionary biology; Phylogenetic tree; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02682046030903776,"gpt":0.2665143590102108,"spread":0.2396938987011731,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001612454,0.0001450664,0.0001731683,0.000007579243,0.0009339729,0.00001256478,0.0004373595,0.0002110906,0.001781801],"category_scores_gemma":[0.00004560773,0.000101525,0.00006311868,0.0001156531,0.0008327215,0.00007821037,0.000442982,0.0002778939,0.0006495344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008604573,"about_ca_system_score_gemma":0.00000916355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004803495,"about_ca_topic_score_gemma":0.007252082,"domain_scores_codex":[0.9987502,0.0002007016,0.0002400497,0.0002604777,0.00005531251,0.0004932771],"domain_scores_gemma":[0.9992003,0.0003062761,0.00007931879,0.0003431798,0.000009118868,0.00006174791],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001470014,0.0001941817,0.9847501,0.000003365156,0.00004136844,0.00000605591,0.0005333616,0.00001405516,0.005856649,0.004273169,0.003184428,0.000996243],"study_design_scores_gemma":[0.0006918732,0.0008604833,0.795067,0.00001043172,0.00004077597,0.00006768435,0.0008682852,0.00007227294,0.0004982201,0.03620242,0.1651766,0.0004439655],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908345,0.00004206288,0.0006416092,0.0008644962,0.0003826818,0.0001307881,0.00001330082,0.00004620149,0.007044345],"genre_scores_gemma":[0.9985288,0.00004009648,0.0002430222,0.0007402994,0.0002342652,0.000003272233,0.0001008499,0.000006421461,0.0001029263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1896832,"threshold_uncertainty_score":0.9991307,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2797101767","doi":"10.1038/s41559-018-0519-1","title":"Function and functional redundancy in microbial systems","year":2018,"lang":"en","type":"review","venue":"Nature Ecology & Evolution","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2095,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Center for Dark Energy Biosphere Investigations; National Science Foundation","keywords":"Redundancy (engineering); Biology; Ecological niche; Ecology; Niche; ENCODE; Function (biology); Taxon; Functional diversity; Evolutionary biology; Computer science; Genetics; Habitat","retraction":null,"screen_n_in":null,"score":{"opus":0.01267818909781244,"gpt":0.2517217181217645,"spread":0.239043529023952,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005968221,0.0003419829,0.0008781219,0.0002002955,0.0003135963,0.0000143014,0.0002275544,0.002923671,0.001876518],"category_scores_gemma":[0.00009447696,0.0003206217,0.0001357587,0.0003747459,0.0005401559,0.0001339184,0.0003506131,0.002095704,0.001101988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009417282,"about_ca_system_score_gemma":0.0001054465,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001414136,"about_ca_topic_score_gemma":0.004588786,"domain_scores_codex":[0.9974356,0.001004438,0.000478432,0.0005962937,0.00007957448,0.0004056353],"domain_scores_gemma":[0.9990336,0.0002482772,0.0003147122,0.0003248185,0.00001872355,0.00005985783],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008271181,0.001597342,0.02935589,0.009781944,0.0008035037,0.00004002183,0.0002482548,0.0003014445,0.0007612608,0.01130427,0.8629003,0.08207864],"study_design_scores_gemma":[0.0002865692,0.0002138167,0.05622968,0.0003956749,0.0001879183,0.0001597657,0.000007156193,0.00001895318,1.286158e-7,0.001012027,0.9411986,0.0002897489],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005006883,0.988126,0.00003264896,0.00003664136,0.004696509,0.0007894274,0.00003144096,0.00004641817,0.001234033],"genre_scores_gemma":[0.03108823,0.9658316,0.00005106368,0.0001655864,0.0007382054,0.000141265,0.0007772458,0.00004125885,0.001165503],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.0817889,"threshold_uncertainty_score":0.9999246,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2952982270","doi":"10.1038/s41579-019-0222-5","title":"Scientists’ warning to humanity: microorganisms and climate change","year":2019,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2074,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Biological and Environmental Research; Australian Research Council; Pacific Northwest National Laboratory; Biotechnology and Biological Sciences Research Council; Medical Research Council; U.S. Department of Energy; Gordon and Betty Moore Foundation; National Aeronautics and Space Administration; National Science Foundation","keywords":"Climate change; Anthropocene; Global warming; Environmental ethics; Environmental resource management; Ecology; Environmental planning; Natural resource economics; Environmental science; Biology; Economics","retraction":null,"screen_n_in":null,"score":{"opus":0.06401196108698243,"gpt":0.3432125881794996,"spread":0.2792006270925172,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.001366082,0.000773693,0.003256857,0.0001999474,0.0004549022,0.00003888264,0.001214047,0.002029398,0.003600498],"category_scores_gemma":[0.000113378,0.0006009121,0.0004273872,0.0005622217,0.0004401142,0.0001021032,0.002664709,0.002740959,0.01456955],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002487282,"about_ca_system_score_gemma":0.00003062499,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002738039,"about_ca_topic_score_gemma":0.0004409527,"domain_scores_codex":[0.9954003,0.001664324,0.0008298527,0.001150691,0.00004629893,0.0009085438],"domain_scores_gemma":[0.997961,0.0002604206,0.0006158976,0.0009841868,0.00001546477,0.0001630273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000009938616,0.00006883866,0.00003628494,0.008918348,0.00005922827,0.00001065893,0.0002763133,7.594765e-8,0.004321202,0.0002396981,0.03272128,0.9533381],"study_design_scores_gemma":[0.00009681167,0.0001349805,0.00002900828,0.002889753,0.0003247499,0.0004269808,0.000002877452,6.413864e-8,0.000008249983,0.00001883588,0.9954726,0.0005950567],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001441358,0.9941444,0.000002469062,0.0000707853,0.001213318,0.002928318,0.0001820927,0.00004582532,0.001268655],"genre_scores_gemma":[0.00001829967,0.9944835,0.000621191,0.003279364,0.0001895622,0.0001459201,0.0007694426,0.00006658077,0.0004261221],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9627513,"threshold_uncertainty_score":0.9996442,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2068381362","doi":"10.1111/j.1462-2920.2005.00956.x","title":"Quantifying the roles of immigration and chance in shaping prokaryote community structure","year":2005,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1882,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Engineering and Physical Sciences Research Council; McGill University","keywords":"Biology; Ecology; Community structure; Competition (biology); Process (computing); Immigration; Range (aeronautics); Taxon; Prokaryote; Archaea; Evolutionary biology; Law; Computer science; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01665580589210839,"gpt":0.2282012353071068,"spread":0.2115454294149984,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002951787,0.0001240425,0.000173314,0.00002552479,0.0002595835,0.000003388395,0.0002839996,0.0001329517,0.001093097],"category_scores_gemma":[0.000007127782,0.00009707044,0.00002574144,0.00005674817,0.0008172602,0.00009346815,0.0004572847,0.0004825039,0.0000389523],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007496274,"about_ca_system_score_gemma":0.000002616662,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003311881,"about_ca_topic_score_gemma":0.03305693,"domain_scores_codex":[0.9987931,0.0006144229,0.000216721,0.0001523991,0.00002134799,0.0002020188],"domain_scores_gemma":[0.9994904,0.0001315114,0.000108185,0.0002507465,6.605472e-7,0.00001849106],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002882843,0.00006973435,0.04501506,0.000004312804,0.000006217667,2.541325e-7,0.003895137,0.0003423144,0.9476488,0.00002567226,0.00006792593,0.002895757],"study_design_scores_gemma":[0.0008938961,0.0003230585,0.7582635,0.0000288835,0.00001927534,0.0001280888,0.003175475,0.0005164364,0.2268132,0.000577984,0.008871381,0.0003888836],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989543,0.0002740289,0.00001205552,0.0004065784,0.00003472648,0.0001910577,0.00003613007,0.000006251046,0.00008488109],"genre_scores_gemma":[0.9990345,0.00008973804,0.0002453546,0.000497859,0.00001462357,0.00000536786,0.00008131064,0.000006786041,0.00002452235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7208356,"threshold_uncertainty_score":0.9998201,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2034833171","doi":"10.1038/ismej.2007.53","title":"Pyrosequencing enumerates and contrasts soil microbial diversity","year":2007,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1861,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"National Institute of General Medical Sciences; Ministério da Educação; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado do Rio Grande do Sul; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Pyrosequencing; Alphaproteobacteria; Phylum; UniFrac; Operational taxonomic unit; Betaproteobacteria; Ecology; Biodiversity; Bacteroidetes; Soil microbiology; Soil water; Archaea; Species evenness; 16S ribosomal RNA; Species diversity; Bacteria; Actinobacteria; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.009145942853921667,"gpt":0.2071488055070995,"spread":0.1980028626531778,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009740521,0.00006564562,0.00008445205,0.00001309017,0.001372087,0.00002057554,0.0002437879,0.00005420188,0.00165336],"category_scores_gemma":[0.0000197694,0.00004545942,0.00002865736,0.00004575621,0.0003437856,0.00009704793,0.000478538,0.0004244103,0.00007232602],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005727527,"about_ca_system_score_gemma":0.00000634753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003457331,"about_ca_topic_score_gemma":0.001974165,"domain_scores_codex":[0.9994224,0.0001318723,0.0001077122,0.00006477143,0.00005396445,0.0002193168],"domain_scores_gemma":[0.999638,0.0001394459,0.00006885249,0.00008577297,0.000004588541,0.00006329289],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001388348,0.00005595742,0.07299349,0.000002348264,0.00004057374,0.00003553574,0.005510109,0.0002967842,0.9011941,0.0001425464,0.01351558,0.006074129],"study_design_scores_gemma":[0.00104562,0.0002174369,0.94682,0.00001353981,0.00005082061,0.001529812,0.0007293185,0.0000683371,0.02579038,0.01457062,0.008887078,0.000277032],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976048,0.00003994536,0.0001577901,0.0005720393,0.0001746717,0.00003656063,0.000001578876,0.000006814928,0.001405787],"genre_scores_gemma":[0.9985824,0.0000364215,0.00008730371,0.001037941,0.00009097004,8.149881e-8,8.699581e-7,0.000002943474,0.0001611155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8754037,"threshold_uncertainty_score":0.999928,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2981774387","doi":"10.1038/s41467-019-12798-y","title":"Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning","year":2019,"lang":"en","type":"article","venue":"Nature Communications","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1791,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agroscope; Koninklijke Nederlandse Akademie van Wetenschappen; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Nederlands Instituut voor Ecologie; National Science Foundation","keywords":"Ecosystem; Microbiome; Microcosm; Ecology; Biology; Nutrient cycle; Species richness; Grassland; Bioinformatics","retraction":null,"screen_n_in":null,"score":{"opus":0.02032870073814795,"gpt":0.2329654302887764,"spread":0.2126367295506284,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002485731,0.0000969074,0.0001429461,0.00002867521,0.001603141,0.0000148422,0.0008468158,0.0002543647,0.002774559],"category_scores_gemma":[0.00002338023,0.00009832978,0.00003724873,0.0001366942,0.0002987924,0.0001460078,0.007354752,0.0007663505,0.000434711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008496263,"about_ca_system_score_gemma":0.000007117359,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00022849,"about_ca_topic_score_gemma":0.006720808,"domain_scores_codex":[0.9991605,0.0003452903,0.0001231464,0.0001676163,0.00005085784,0.0001525598],"domain_scores_gemma":[0.9986042,0.000193972,0.00007833095,0.001059794,0.00001431859,0.0000493565],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001135619,0.0002671548,0.8310056,0.00002638992,0.00008302821,7.15686e-7,0.001728318,0.00004089324,0.1392597,0.005290617,0.02167272,0.0005113445],"study_design_scores_gemma":[0.00050186,0.00008499651,0.8650954,0.00001280738,0.0000279314,0.00002711414,0.0001048162,0.0003005803,0.0001906908,0.0006864507,0.1327703,0.0001970416],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880173,0.0001109881,0.000007427797,0.0006176787,0.0003498403,0.0002300315,0.00006849908,0.00005163554,0.01054663],"genre_scores_gemma":[0.9985139,0.00004227778,0.0006701576,0.0003358262,0.00001966455,0.0000042763,0.0001911973,0.000005689248,0.0002170431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.139069,"threshold_uncertainty_score":0.9996966,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070826422","doi":"10.1038/nrmicro3400","title":"Ecology and exploration of the rare biosphere","year":2015,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1275,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Ecology; Biosphere; Microbial ecology; Microbial population biology; Abundance (ecology); Population; Community; Relative species abundance; Ecosystem; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.04681648900263592,"gpt":0.3177894775070171,"spread":0.2709729885043812,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008536196,0.0004076008,0.002185377,0.00003576202,0.0001415689,0.000004539728,0.0009148021,0.002079998,0.001510032],"category_scores_gemma":[0.0001721392,0.0002318684,0.0003680299,0.0003639665,0.00084379,0.00008416618,0.001115629,0.001804423,0.0004596458],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001311215,"about_ca_system_score_gemma":0.00008495317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001799812,"about_ca_topic_score_gemma":0.00083224,"domain_scores_codex":[0.995693,0.002812125,0.0007357174,0.0004374871,0.00003090408,0.0002907758],"domain_scores_gemma":[0.9980459,0.0002292587,0.0008814951,0.0007675896,0.00002202215,0.00005374198],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001074683,0.00009452425,0.0000759265,0.005046382,0.00009903003,0.000002197676,0.000150288,0.000001129833,0.0007898565,0.0003372721,0.1404046,0.8529881],"study_design_scores_gemma":[0.00008844655,0.00007507567,0.00001355785,0.0008049833,0.0002523118,0.0001594589,0.000004962131,8.977834e-8,0.000006302096,0.0003538729,0.9980348,0.0002060823],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00007549426,0.9965232,0.000001214932,0.0001006659,0.0006616418,0.001359099,0.00008807048,0.00001111174,0.001179486],"genre_scores_gemma":[0.00004649189,0.99844,0.0001691913,0.0004588111,0.00005675844,0.00006093366,0.0003036407,0.00002187454,0.0004422551],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8576303,"threshold_uncertainty_score":0.9994027,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091333662","doi":"10.1038/ismej.2011.188","title":"454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants","year":2011,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1148,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Biology; Acidobacteria; Pyrosequencing; UniFrac; Verrucomicrobia; Incertae sedis; Euryarchaeota; 16S ribosomal RNA; Operational taxonomic unit; Ribosomal RNA; Taxon; Ecology; Zoology; Actinobacteria; Bacteria; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.04983419426463948,"gpt":0.2240237051840094,"spread":0.1741895109193699,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000265082,0.00009403753,0.0001720484,0.00001483352,0.0005501201,0.000005888635,0.0004091391,0.00007705685,0.01983687],"category_scores_gemma":[0.00001282536,0.00006069825,0.00006277952,0.00003840618,0.0001900032,0.0001146651,0.0005365743,0.0002366242,0.0001307162],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001412643,"about_ca_system_score_gemma":0.00001252034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004535303,"about_ca_topic_score_gemma":0.001009744,"domain_scores_codex":[0.99912,0.0003886672,0.0001628501,0.00008314926,0.00007032339,0.0001749845],"domain_scores_gemma":[0.9994398,0.0001017965,0.0001911842,0.0002058846,0.000005543527,0.00005573477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002621535,0.0001046644,0.02082569,6.185155e-7,0.00006476889,0.00001042473,0.007918592,0.00001673841,0.9685997,0.000004486362,0.001651838,0.0005402725],"study_design_scores_gemma":[0.001280581,0.0005993064,0.7097808,0.00002188179,0.00008345873,0.0000924281,0.0005964742,0.000006282529,0.2751732,0.01129472,0.0008802581,0.0001906772],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970933,0.000006187298,0.000010522,0.00005863322,0.0002687411,0.00006928018,0.00003574213,0.000007208345,0.002450372],"genre_scores_gemma":[0.9995115,0.00004937567,0.0001369724,0.00009205832,0.00006407641,4.716355e-7,0.00001065793,0.000004239671,0.0001306935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6934265,"threshold_uncertainty_score":0.9810591,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149202898","doi":"10.1093/bioinformatics/btq041","title":"Identifying biologically relevant differences between metagenomic communities","year":2010,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":974,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Metagenomics; Software; Biology; Ecology; Pairwise comparison; Computer science; Computational biology; Data science; Artificial intelligence","retraction":null,"screen_n_in":null,"score":{"opus":0.0448213979929792,"gpt":0.2558298542255986,"spread":0.2110084562326194,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003686139,0.0001238441,0.0002023826,0.00003142433,0.0004152124,0.00003733134,0.0006674341,0.0001594715,0.005596327],"category_scores_gemma":[0.00004036031,0.00009408893,0.00005442421,0.0000811921,0.0005343158,0.0001878243,0.0005846064,0.000533885,0.001593771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001812601,"about_ca_system_score_gemma":0.000008127505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002584883,"about_ca_topic_score_gemma":0.00160117,"domain_scores_codex":[0.9992306,0.0001034773,0.0002987494,0.00005805038,0.00006666225,0.0002424566],"domain_scores_gemma":[0.9991462,0.0002800701,0.0001309748,0.0003755194,0.000006335419,0.0000608905],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000367734,0.0001826271,0.8224443,0.00008377925,0.0001462918,0.000002741519,0.01828391,0.0000394423,0.1222732,0.003646711,0.008154508,0.02470572],"study_design_scores_gemma":[0.0002940871,0.000199804,0.9617447,0.00001003396,0.00004401335,0.00001500794,0.002069994,0.0009978617,0.001266673,0.008633963,0.02429758,0.0004262842],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883207,0.000005127452,0.0004665358,0.00008660745,0.0002079673,0.0001063874,0.00002002378,0.00005363547,0.01073301],"genre_scores_gemma":[0.9885812,0.00003008981,0.01084093,0.0002980613,0.00003011294,0.000004597114,0.00007103985,0.000004676822,0.0001392769],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1393004,"threshold_uncertainty_score":0.9991836,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984156791","doi":"10.1126/science.1257594","title":"Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes","year":2015,"lang":"en","type":"review","venue":"Science","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":965,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Tula Foundation; National Science Foundation","keywords":"Creatures; Archaea; Biology; Ecology; Carbon cycle; Marine ecosystem; Marine bacteriophage; Ecosystem; Bacteria; Paleontology; Natural (archaeology)","retraction":null,"screen_n_in":null,"score":{"opus":0.0577731918240648,"gpt":0.3235739589481284,"spread":0.2658007671240636,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003278472,0.0001876823,0.0004838114,0.00006613776,0.0002986313,0.00002723646,0.002830193,0.0001397476,0.0001239706],"category_scores_gemma":[0.0002500737,0.00009660985,0.00008176607,0.0008756022,0.002129066,0.00008215653,0.001572334,0.0007865912,0.00003710453],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001721922,"about_ca_system_score_gemma":0.000155963,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002845617,"about_ca_topic_score_gemma":0.003753002,"domain_scores_codex":[0.998192,0.000600777,0.0003302798,0.0002932503,0.0002500241,0.0003337381],"domain_scores_gemma":[0.9984345,0.0005208208,0.0002549831,0.0007438217,0.00001245416,0.00003343274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000007947658,0.0001853338,0.002601946,0.0009526208,0.00002065374,0.00001568513,0.03211599,0.0002670702,0.001372085,0.0001701397,0.0002161753,0.9620743],"study_design_scores_gemma":[0.00008716187,0.00006377714,0.003817075,0.0006484535,0.00006255955,0.00005866665,0.0001724875,0.00005408012,0.00002634851,0.00200606,0.9927252,0.0002781196],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.110846,0.8768169,0.000001045829,0.0001745277,0.000992761,0.001184397,0.00001242202,0.00002582979,0.009946105],"genre_scores_gemma":[0.05614294,0.9433028,0.0001540926,0.0001814359,0.00005389203,0.00002828689,0.00001155006,0.0000149982,0.0001100008],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.992509,"threshold_uncertainty_score":0.7844631,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1991708537","doi":"10.1038/nature03891","title":"The contribution of species richness and composition to bacterial services","year":2005,"lang":"en","type":"article","venue":"Nature","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":964,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biodiversity; Species richness; Ecosystem services; Ecosystem; Microcosm; Ecology; Global biodiversity; Autotroph; Biology; Environmental science; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.002474355497958586,"gpt":0.2102267120290036,"spread":0.207752356531045,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008873536,0.00003180886,0.00004832082,0.000004819971,0.0001594624,0.000006241521,0.0001031575,0.0001929974,0.0004131147],"category_scores_gemma":[0.00000543083,0.000022016,0.000008478739,0.00004269961,0.0000757551,0.00004406231,0.00009693026,0.0002590869,0.00002900849],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001673116,"about_ca_system_score_gemma":0.000001174847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001451188,"about_ca_topic_score_gemma":0.001129389,"domain_scores_codex":[0.9997519,0.00005727535,0.00004926166,0.00004855486,0.00002922755,0.00006377573],"domain_scores_gemma":[0.9998243,0.00005540055,0.00002508057,0.00007391107,0.000007045642,0.00001424635],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001248484,0.00002441494,0.006262976,0.000002299907,0.000004585212,1.05659e-7,0.0002795941,0.00005356016,0.9874654,0.001677864,0.00332426,0.0007800554],"study_design_scores_gemma":[0.0002334146,0.00006897276,0.6326688,0.000005854114,0.000006648914,0.000003605186,0.00004752547,0.00003241066,0.04778869,0.000627001,0.3184539,0.00006312157],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969001,0.00005155195,0.000005806561,0.001940222,0.00009367446,0.00006654461,0.000007338092,0.000004552991,0.0009302224],"genre_scores_gemma":[0.9991101,0.00001590745,0.00007992938,0.0006621727,0.00004879442,0.000001200781,0.00002550504,0.000001059175,0.00005534114],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9396768,"threshold_uncertainty_score":0.4523317,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2944548763","doi":"10.1038/s41564-019-0426-5","title":"Global diversity and biogeography of bacterial communities in wastewater treatment plants","year":2019,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":896,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; Concordia University; McGill University","funders":"Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology; Universidade Federal do Rio de Janeiro; Applied Molecular Biosciences Unit; National Cheng Kung University; Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa; Universidade Nova de Lisboa; Universidad Nacional Autónoma de México; Universidade de São Paulo; North Carolina State University; Chinese Academy of Sciences; Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences; Commonwealth Scientific and Industrial Research Organisation; Tsinghua University; Instituto de Ingeniería, Universidad Nacional Autónoma de México; University of Glasgow; Lawrence Berkeley National Laboratory; Rede de Química e Tecnologia; Villum Fonden; Newcastle University; Northern Arizona University; University of Oklahoma; Sun Yat-sen University; Arizona State University","keywords":"Ecology; Activated sludge; Biology; Biological dispersal; Sewage treatment; Microbial ecology; Biogeography; Microbial population biology; Environmental science; Environmental engineering; Bacteria; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.00597011895865581,"gpt":0.1989273417275311,"spread":0.1929572227688753,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000096494,0.0001130288,0.0002461652,0.00004047595,0.0001143473,0.000001791586,0.0002272088,0.0003831111,0.003277331],"category_scores_gemma":[0.000002158937,0.00009143557,0.00003887236,0.00007666228,0.0003895209,0.00003869512,0.00108212,0.0001925001,0.00005094473],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000610368,"about_ca_system_score_gemma":0.000004146166,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003044169,"about_ca_topic_score_gemma":0.01867283,"domain_scores_codex":[0.999273,0.0002686739,0.0001169669,0.0001320794,0.00001354713,0.0001957275],"domain_scores_gemma":[0.999639,0.00007719979,0.00005157363,0.0002078368,0.000003160219,0.0000212422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002413545,0.00009838155,0.8115968,0.000004964151,0.00002436463,0.000001548012,0.001059258,0.00000960117,0.1863011,0.00005014545,0.0004715472,0.0001409191],"study_design_scores_gemma":[0.00253722,0.001038707,0.9452094,0.00001683958,0.00001878476,0.00008043581,0.0005871879,0.000004727981,0.008680215,0.0008580127,0.04068716,0.0002812418],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983247,0.0001229582,9.250118e-8,0.00004419229,0.0002466181,0.0001468297,0.0002289652,0.000006765398,0.0008788694],"genre_scores_gemma":[0.9993426,0.00007961254,0.0000505616,0.0001660897,0.000006679525,9.135691e-7,0.0003188547,0.000002306127,0.00003240244],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1776209,"threshold_uncertainty_score":0.9992338,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2129687578","doi":"10.1038/nbt.1823","title":"Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications","year":2011,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":809,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; University of Waterloo","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; Natural Environment Research Council; Sight Research UK; National Human Genome Research Institute; Howard Hughes Medical Institute","keywords":"Sequence (biology); Gene; Genetics; Biology; Computational biology","retraction":null,"screen_n_in":null,"score":{"opus":0.02029961773377464,"gpt":0.2284247885208187,"spread":0.208125170787044,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003641731,0.0002521226,0.0002488036,0.0002245157,0.000371695,0.00003157996,0.000719997,0.001751134,0.001909199],"category_scores_gemma":[0.0002271802,0.0002455043,0.00005145599,0.0004969832,0.001112472,0.00131609,0.0005051541,0.00132818,0.0007564971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001607621,"about_ca_system_score_gemma":0.00004221828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002205191,"about_ca_topic_score_gemma":0.0002992931,"domain_scores_codex":[0.9985672,0.0001235882,0.0004602862,0.0002706925,0.0001293812,0.0004488241],"domain_scores_gemma":[0.9987621,0.00007922802,0.0003061553,0.0007151406,0.0000469732,0.00009035546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007089221,0.0003573364,0.01794242,0.0001532383,0.0001550478,0.0000229197,0.009423687,0.00004344228,0.7818732,0.04465122,0.04797161,0.09669694],"study_design_scores_gemma":[0.001347175,0.0005405307,0.3044612,0.00005201012,0.00007246785,0.0004476604,0.0007259251,0.001646757,0.06023823,0.008875536,0.6204376,0.001154995],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9788054,0.0002436103,0.00102584,0.002189912,0.0004745775,0.0005992824,0.0001580814,0.0002654619,0.01623785],"genre_scores_gemma":[0.9896746,0.0006215295,0.007011449,0.002245271,0.00002389815,0.00003916129,0.0002800473,0.000009137253,0.0000948965],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.721635,"threshold_uncertainty_score":0.9999997,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168104108","doi":"10.1128/aem.02772-10","title":"Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":788,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Pyrosequencing; Biology; Metagenomics; Genetics; Illumina dye sequencing; 16S ribosomal RNA; Computational biology; Ribosomal RNA; DNA sequencing; Gene; Genome; Sequence assembly; Deep sequencing; Sequence analysis; Transcriptome; Gene expression","retraction":null,"screen_n_in":null,"score":{"opus":0.07193464806363736,"gpt":0.2100395760047354,"spread":0.138104927941098,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001492023,0.000290089,0.0003966969,0.00003995281,0.0004065872,0.00001122205,0.0004251441,0.0003064385,0.007144433],"category_scores_gemma":[0.000002706848,0.0002915439,0.00005792418,0.00005501776,0.002449113,0.0001387287,0.0007003311,0.0002900208,0.0001201935],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006409167,"about_ca_system_score_gemma":0.000007208184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003035001,"about_ca_topic_score_gemma":0.0006236744,"domain_scores_codex":[0.9985996,0.0002564312,0.0003980882,0.00034903,0.00004004693,0.0003567261],"domain_scores_gemma":[0.9991909,0.0001303479,0.0002071705,0.0003946428,0.000002013141,0.00007497081],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008049242,0.0002093206,0.007787603,0.000004868997,0.00004550398,0.000001460644,0.002738148,0.00002009971,0.9847446,0.00007814178,0.003024579,0.001265198],"study_design_scores_gemma":[0.001090662,0.0003139085,0.03155637,0.000008750788,0.00006276632,0.00005136979,0.001888555,0.0001965316,0.9539092,0.0007510415,0.009557591,0.0006132885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972987,0.0001660958,0.0002086968,0.00003697858,0.0001038279,0.0002312136,0.0008335436,0.00002912173,0.001091856],"genre_scores_gemma":[0.98829,0.0003787763,0.004764928,0.000695344,0.00003513819,0.00001804375,0.005745013,0.00002346277,0.0000493299],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03083542,"threshold_uncertainty_score":0.9999537,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2299938909","doi":"10.3389/fmicb.2016.00214","title":"Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?","year":2016,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":692,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Laurentian University; University of Saskatchewan","funders":"U.S. Geological Survey; Natural Environment Research Council; Sight Research UK; National Science Foundation","keywords":"Ecosystem; Function (biology); Community structure; Environmental science; Ecology; Environmental resource management; Biology; Evolutionary biology","retraction":null,"screen_n_in":null,"score":{"opus":0.00403133153724236,"gpt":0.1925755586717065,"spread":0.1885442271344641,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003767253,0.0002158929,0.0005587064,0.0001248895,0.0001727286,0.000003048743,0.0007044615,0.0003712065,0.002325935],"category_scores_gemma":[0.0001274239,0.0001446595,0.00007357365,0.0002368036,0.0005432197,0.0001417628,0.0003349367,0.0003601201,0.00003836411],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001440401,"about_ca_system_score_gemma":0.00005337135,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003733836,"about_ca_topic_score_gemma":0.01809902,"domain_scores_codex":[0.9978405,0.0009730197,0.0005589059,0.0002669968,0.00003633316,0.000324291],"domain_scores_gemma":[0.9987023,0.0002833013,0.0003562618,0.00056257,0.00005312846,0.00004236503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001852306,0.0001437886,0.04849633,0.0002243753,0.00007856313,6.859872e-7,0.0009534625,0.0001239428,0.9351868,0.00003387647,0.01414659,0.0004263459],"study_design_scores_gemma":[0.002077011,0.00149582,0.02586893,0.0006010656,0.000128424,0.0001444932,0.002279061,0.00002434336,0.8403746,0.01350759,0.1127089,0.0007897379],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994345,0.0002125892,0.002456648,0.0001579547,0.00127183,0.0003237754,0.0008324535,0.00002894049,0.0003708014],"genre_scores_gemma":[0.9980567,0.00007902428,0.001279147,0.00007227914,0.00003353394,0.0000169203,0.00008448764,0.00001407417,0.0003638551],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09856226,"threshold_uncertainty_score":0.9998181,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2897766421","doi":"10.1007/978-1-4939-8728-3_8","title":"16S rRNA Gene Analysis with QIIME2","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":629,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Phylogenetic tree; Biology; Taxonomic rank; 16S ribosomal RNA; Metagenomics; Phylogenetic diversity; Computational biology; Phylogenetics; Tree (set theory); Gene; Ecology; Genetics; Mathematics","retraction":null,"screen_n_in":null,"score":{"opus":0.01462159567818407,"gpt":0.3630929429158632,"spread":0.3484713472376791,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009329964,0.0001312471,0.0002992669,0.0001194531,0.0001000959,0.000003960136,0.0003947481,0.0001960828,0.004711546],"category_scores_gemma":[0.00008565588,0.0001069899,0.00006956235,0.0008364898,0.0008864318,0.00002084399,0.0003160154,0.000233541,0.0001670867],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004724896,"about_ca_system_score_gemma":0.000009269828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005295886,"about_ca_topic_score_gemma":0.002363911,"domain_scores_codex":[0.9970166,0.002125444,0.0001766902,0.0003326326,0.00003132397,0.0003172871],"domain_scores_gemma":[0.9992321,0.0001541778,0.00006822318,0.0004877036,0.0000111459,0.00004669491],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005207683,0.00005184293,0.05024681,7.897799e-7,0.000129067,0.00001046623,0.0001372816,0.0002617589,0.9448422,0.0005897896,0.00006878418,0.003609195],"study_design_scores_gemma":[0.001067874,0.001871042,0.1590879,0.000004474493,0.0004091385,0.00004952592,0.0000617615,0.001274607,0.7607365,0.03273528,0.04189929,0.0008026071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4417427,0.00003309796,0.5502641,0.0001186055,0.00006711768,0.0000869131,0.000002677039,0.00001625835,0.007668464],"genre_scores_gemma":[0.3440905,0.000006866774,0.6545484,0.00118426,0.00001813753,0.00001152844,0.00002590291,0.000008125676,0.0001062677],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1841056,"threshold_uncertainty_score":0.9961983,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2560737530","doi":"10.1038/s41559-016-0015","title":"High taxonomic variability despite stable functional structure across microbial communities","year":2016,"lang":"en","type":"article","venue":"Nature Ecology & Evolution","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":624,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Biological dispersal; Taxonomic rank; Ecology; Ecosystem; Metacommunity; Microbial population biology; Metagenomics; Community structure; Microbial ecology; Community; Functional group; Gene; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.005808892854368929,"gpt":0.2056674169261041,"spread":0.1998585240717352,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006506335,0.0002315784,0.0002922972,0.0000390551,0.0009954148,0.00001302246,0.0004823599,0.001145813,0.02432702],"category_scores_gemma":[0.0001351281,0.0001833928,0.00008414399,0.0001532848,0.001191447,0.0003136209,0.0005894389,0.001103362,0.0005893689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001030617,"about_ca_system_score_gemma":0.00005919215,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005989508,"about_ca_topic_score_gemma":0.04462231,"domain_scores_codex":[0.9978028,0.0009211631,0.0002788163,0.0003344444,0.0000828167,0.0005799675],"domain_scores_gemma":[0.9985523,0.0006019242,0.0001657899,0.0005662956,0.00004094948,0.00007271627],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005306904,0.0002465365,0.5220243,0.00001098575,0.00007786058,0.000001633547,0.0002931082,0.001329975,0.4104136,0.004576964,0.05995603,0.0005383256],"study_design_scores_gemma":[0.0008471978,0.0001457336,0.963781,0.000005419427,0.00002005959,0.00003229601,0.00007016431,0.00002672036,0.001904011,0.01608388,0.01684481,0.0002387266],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995299,0.00002255133,0.0009256161,0.0008061967,0.001832609,0.000263476,0.0004153317,0.0000772013,0.000357986],"genre_scores_gemma":[0.9975954,0.000008739908,0.0006837244,0.0007777663,0.0001766399,0.00002078626,0.0002003413,0.00001451854,0.0005221387],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4417567,"threshold_uncertainty_score":0.9765649,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139774691","doi":"10.1111/j.1462-2920.2010.02277.x","title":"Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes","year":2010,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":609,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Ontario; National Science Foundation","keywords":"Biome; Arctic; Biology; Soil water; Ecology; Temperate climate; Biological dispersal; Community structure; Range (aeronautics); Phylogenetic diversity; Pyrosequencing; Ecosystem; Phylogenetic tree","retraction":null,"screen_n_in":null,"score":{"opus":0.01652658611127206,"gpt":0.2020936022505542,"spread":0.1855670161392821,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002405676,0.0002591875,0.0002832698,0.00005302781,0.0002784851,0.0000164696,0.0008526729,0.0003040143,0.04164233],"category_scores_gemma":[0.000006264063,0.0002006061,0.00008087657,0.00007885582,0.001085739,0.0001072974,0.002009054,0.0007089202,0.001152885],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002133249,"about_ca_system_score_gemma":0.00000457852,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005603629,"about_ca_topic_score_gemma":0.04137742,"domain_scores_codex":[0.9983121,0.0004880801,0.0002376218,0.0004475992,0.00006183377,0.0004527799],"domain_scores_gemma":[0.9991542,0.0002300144,0.00009888976,0.0004703304,5.449636e-7,0.00004600232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001015981,0.0003080168,0.3754569,0.000001300506,0.00001319086,0.000005779852,0.001698291,0.000003451536,0.6218489,0.000006595408,0.0003795714,0.0001764161],"study_design_scores_gemma":[0.001130361,0.0001235297,0.9700187,0.000004747983,0.0000150113,0.00002431728,0.0003303262,0.000005335559,0.01665922,0.0009064472,0.0105196,0.0002623311],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979252,0.00001340749,0.000001827353,0.0005689471,0.000544986,0.0002907789,0.0002725362,0.000009530982,0.0003728245],"genre_scores_gemma":[0.9953851,0.00001949823,0.00004478151,0.004081352,0.00005162257,0.00001561076,0.0002756042,0.0000133044,0.0001132041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6051897,"threshold_uncertainty_score":0.9996248,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1965423747","doi":"10.1073/pnas.0908284106","title":"Ecology of the rare microbial biosphere of the Arctic Ocean","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":589,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Fisheries and Oceans Canada; W. M. Keck Foundation; National Science Foundation","keywords":"Phylotype; Biology; Ecology; Biosphere; Abundance (ecology); Biogeography; Biological dispersal; Taxon; Biodiversity; Rare species; Bacterioplankton; Phylogenetics; Population; Phytoplankton; Habitat","retraction":null,"screen_n_in":null,"score":{"opus":0.01827610259614784,"gpt":0.2528095337807607,"spread":0.2345334311846129,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0007805756,0.00007580998,0.0001536463,0.00002271373,0.0003071642,0.000003200288,0.002007593,0.0001116432,0.0003236896],"category_scores_gemma":[0.0003471912,0.00003863413,0.0001109088,0.0006104847,0.003144764,0.0001380271,0.0004938892,0.0002474923,0.000002055053],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003615354,"about_ca_system_score_gemma":0.0000256972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003614768,"about_ca_topic_score_gemma":0.000006733166,"domain_scores_codex":[0.9990662,0.00004150376,0.0002871095,0.0001394701,0.0003271142,0.0001386042],"domain_scores_gemma":[0.999205,0.0001387863,0.0005592185,0.00002513894,0.00005767883,0.00001417246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000181936,0.0000953198,0.07136463,0.00002134336,0.000008118216,1.077741e-9,0.0003649514,0.0003726085,0.9171534,0.007001759,0.003508322,0.00009132101],"study_design_scores_gemma":[0.0001021553,0.00006658712,0.6773233,0.000030561,0.0000099614,0.000005223276,0.00009673961,0.00004213375,0.2745877,0.04747893,0.0002165441,0.00004007983],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886438,0.0000186799,3.817766e-8,0.006529804,0.00004018332,0.0001641278,0.00001202882,0.000002274749,0.004589126],"genre_scores_gemma":[0.9986996,0.000007748979,0.0001460073,0.000962312,0.00001657283,6.533331e-7,8.127058e-8,0.000001529531,0.0001654887],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6425657,"threshold_uncertainty_score":0.9995681,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2138465606","doi":"10.1038/nrmicro2778","title":"Microbial ecology of expanding oxygen minimum zones","year":2012,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":588,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Tula Foundation","keywords":"Biogeochemical cycle; Trophic level; Ecology; Microbial ecology; Ecosystem; Biology; Biodiversity; Microbial mat; Oxygen; Greenhouse gas; Environmental science; Bacteria; Chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03671958983956827,"gpt":0.3234400870335207,"spread":0.2867204971939524,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.001491103,0.0009685362,0.005246643,0.0002313909,0.0002309611,0.000007655717,0.001800507,0.00449388,0.01319823],"category_scores_gemma":[0.0001506497,0.0007416479,0.00129997,0.0005751254,0.001029333,0.0001043109,0.001498343,0.003167442,0.004677058],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003147948,"about_ca_system_score_gemma":0.00009426501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003347902,"about_ca_topic_score_gemma":0.0004528466,"domain_scores_codex":[0.9928432,0.003379565,0.001817738,0.0008421657,0.00004882563,0.001068508],"domain_scores_gemma":[0.9960986,0.0007321697,0.001807589,0.001187214,0.00002439495,0.0001500739],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004260103,0.0005324981,0.0001126817,0.0143199,0.0004447347,0.00001125657,0.0002207244,5.410569e-7,0.02154389,0.0002365819,0.1021919,0.8603427],"study_design_scores_gemma":[0.0001857119,0.0001328639,0.00002450057,0.001317539,0.0009420232,0.0005400122,0.000003751354,3.673206e-8,0.00004279721,0.00005234735,0.9961348,0.0006235756],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002452657,0.9940473,0.000006037691,0.00003162218,0.002057315,0.001724072,0.000221743,0.00003670547,0.001629963],"genre_scores_gemma":[0.0001073256,0.9957387,0.0009241201,0.0004909037,0.0003568263,0.0001104669,0.001465733,0.00007501149,0.0007309167],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.893943,"threshold_uncertainty_score":0.9995034,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2768021120","doi":"10.1038/ismej.2017.183","title":"Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":571,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ocean Networks Canada Society; University of Victoria","funders":"National Yang-Ming University; Ministry of Science and Technology, Taiwan; National Center for Theoretical Sciences","keywords":"Biology; Biological dispersal; Protist; Metacommunity; Ecology; Habitat; Microbial ecology; Microbial population biology; Bacteria; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.06671977067357635,"gpt":0.2764190227338847,"spread":0.2096992520603083,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008417597,0.00005719584,0.0001051615,0.000009251756,0.001296965,0.00005144968,0.0003579388,0.00002965157,0.0005671945],"category_scores_gemma":[0.0002748384,0.00003479931,0.00002130187,0.00001821661,0.0008076288,0.0002370749,0.000391417,0.0004523553,0.000002671088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003565548,"about_ca_system_score_gemma":0.000008417966,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006503743,"about_ca_topic_score_gemma":0.01884762,"domain_scores_codex":[0.9992999,0.0003017319,0.0001902207,0.00003758774,0.0000517231,0.0001188338],"domain_scores_gemma":[0.9988818,0.0005414221,0.0003845434,0.0001704659,0.000008117553,0.00001370824],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000471641,0.00003897273,0.9343155,0.000007305733,0.00004703417,0.000003417002,0.02439753,0.0001962739,0.03538887,0.002919132,0.0001555324,0.002058815],"study_design_scores_gemma":[0.0005678158,0.00008097105,0.9904438,0.00002620986,0.00001166833,0.0000207213,0.003160817,0.0006590943,0.0001417274,0.004751973,0.00008670352,0.00004846514],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937412,0.00001161702,0.00002248971,0.001281012,0.0001238127,0.00009596691,0.000001437776,0.000001883857,0.00472055],"genre_scores_gemma":[0.9996857,0.00003864455,0.0001163539,0.00004048183,0.00006303575,0.000001729638,0.000002293495,0.000003168919,0.00004858165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05612835,"threshold_uncertainty_score":0.9990559,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2115338073","doi":"10.1128/aem.71.5.2303-2309.2005","title":"Contribution of <i>Archaea</i> to Total Prokaryotic Production in the Deep Atlantic Ocean","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":568,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Crenarchaeota; Euryarchaeota; Mesopelagic zone; Archaea; Bathyal zone; Thaumarchaeota; Biology; Water column; Oceanography; Ecology; Pelagic zone; Bacteria; Geology; Paleontology","retraction":null,"screen_n_in":null,"score":{"opus":0.003381290299401925,"gpt":0.1753273848869095,"spread":0.1719460945875076,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002616544,0.0001186166,0.0001692664,0.00002894947,0.0001092292,0.000002555615,0.0001724725,0.00009863302,0.0003905565],"category_scores_gemma":[0.000007992797,0.00009209272,0.00002318811,0.00008112918,0.0004704627,0.00003818415,0.0002204827,0.0001788136,0.0001694495],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006514465,"about_ca_system_score_gemma":0.000002131957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007136044,"about_ca_topic_score_gemma":0.0005108668,"domain_scores_codex":[0.9991542,0.0001311846,0.0001986256,0.0002406241,0.00002845247,0.0002469593],"domain_scores_gemma":[0.9996693,0.00005677508,0.00005539356,0.0001875838,8.002763e-7,0.00003010856],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006957095,0.0001973953,0.02607207,0.000003471633,0.000006671085,6.551459e-7,0.001289512,0.0008376592,0.9691219,0.0001356245,0.0006258764,0.00163963],"study_design_scores_gemma":[0.002061217,0.0009583145,0.8360719,0.00001721832,0.00006365949,0.0006267326,0.00175196,0.0001123455,0.127492,0.001662065,0.02844524,0.0007373854],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998302,0.00003622183,0.0000201125,0.0008234964,0.00004288626,0.0004731594,0.000008625735,0.000006580931,0.0002869474],"genre_scores_gemma":[0.998697,0.000031917,0.0001416598,0.0008883346,0.00003288829,0.00001553405,0.0001630628,0.000005541673,0.00002399986],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8416299,"threshold_uncertainty_score":0.427632,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2037015298","doi":"10.1126/science.1248575","title":"Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild <i>Prochlorococcus</i>","year":2014,"lang":"en","type":"article","venue":"Science","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":558,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Prochlorococcus; Genomics; Biology; Evolutionary biology; Computational biology; Genetics; Genome; Cyanobacteria; Gene; Synechococcus; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01819864398651904,"gpt":0.2357429055194177,"spread":0.2175442615328987,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007879348,0.00006849677,0.0001268434,0.00005736558,0.0002425205,0.000009259187,0.0005576133,0.00004851019,0.0002659793],"category_scores_gemma":[0.0001427564,0.000071801,0.00002058786,0.0005582577,0.0009972492,0.000169756,0.0003161912,0.0001367133,0.00008824583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001124592,"about_ca_system_score_gemma":0.00002208966,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002497378,"about_ca_topic_score_gemma":0.001274607,"domain_scores_codex":[0.999121,0.00009046101,0.0002143039,0.0002106381,0.00009980601,0.0002638617],"domain_scores_gemma":[0.9994019,0.0001289905,0.0001128837,0.0002939731,0.00001142352,0.00005080272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000004537748,0.00007400419,0.05564826,0.000004377484,3.045649e-7,1.563778e-7,0.0005435687,0.001497218,0.9410317,0.0002283767,0.0001390696,0.000828426],"study_design_scores_gemma":[0.0008804611,0.0005115276,0.7298968,0.00004422676,0.00001381528,0.00001668293,0.0003748283,0.004505641,0.2116467,0.03511804,0.01635392,0.0006373603],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.981432,0.000006273326,0.0002014534,0.00006246338,0.0001128003,0.00009595226,0.000002190671,0.00001045425,0.01807639],"genre_scores_gemma":[0.9976563,0.000002082532,0.001946931,0.0002067779,0.00001047882,0.000002566926,0.000003362566,0.000003753385,0.0001677544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.729385,"threshold_uncertainty_score":0.3674406,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117349822","doi":"10.1016/j.cub.2015.01.014","title":"Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling","year":2015,"lang":"en","type":"article","venue":"Current Biology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":557,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Biological and Environmental Research; Office of Science; U.S. Department of Energy","keywords":"Biology; Phylum; Archaea; Thermophile; Euryarchaeota; Evolutionary biology; Metagenomics; Computational biology; Genetics; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.03419706821362743,"gpt":0.2740776449607229,"spread":0.2398805767470955,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002292805,0.0001290224,0.0002853567,0.00005111278,0.00004025344,0.000001818437,0.0003330953,0.0001608018,0.0002152085],"category_scores_gemma":[0.00003558123,0.0001148718,0.00004302488,0.00009189937,0.0002389008,0.00002777664,0.0002860992,0.0001687801,0.00003998696],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009823633,"about_ca_system_score_gemma":0.00004599683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003278479,"about_ca_topic_score_gemma":0.006758051,"domain_scores_codex":[0.9989175,0.0002664038,0.0002645219,0.0002605912,0.00002980144,0.0002612472],"domain_scores_gemma":[0.9993885,0.0001585804,0.0001170465,0.0002450593,0.000007059205,0.00008377444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001405822,0.00009602336,0.03470448,0.000005168208,0.000009231679,4.994522e-7,0.002519363,0.000194033,0.9577885,0.0006594795,0.0005136588,0.00336893],"study_design_scores_gemma":[0.008248813,0.002253655,0.23177,0.0001037254,0.00006565259,0.000006884629,0.001168115,0.000826903,0.1985162,0.497225,0.05860874,0.001206255],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980126,0.0005201378,0.0004108704,0.0001441712,0.0005530761,0.0002245185,0.00002312936,0.00001353361,0.00009796154],"genre_scores_gemma":[0.9980025,0.00007969027,0.001543382,0.00004974159,0.00008873894,0.000009087895,0.0002086734,0.000008845196,0.000009399067],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7592723,"threshold_uncertainty_score":0.4956102,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2003010041","doi":"10.1038/nature12221","title":"Pan genome of the phytoplankton Emiliania underpins its global distribution","year":2013,"lang":"en","type":"article","venue":"Nature","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":528,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Biotechnology and Biological Sciences Research Council; Office of Science; Agence Nationale de la Recherche; Sight Research UK; Joint Genome Institute; Natural Environment Research Council; U.S. Department of Energy","keywords":"Emiliania huxleyi; Haptophyte; Coccolithophore; Phytoplankton; Biology; Oceanography; Ecology; Evolutionary biology; Geology; Nutrient","retraction":null,"screen_n_in":null,"score":{"opus":0.004478678689751966,"gpt":0.2120683834259144,"spread":0.2075897047361625,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005026186,0.00005916297,0.00007184486,0.000001992647,0.0001205606,0.00000353312,0.0003263366,0.0004798446,0.003455766],"category_scores_gemma":[0.00002710264,0.00004035491,0.00003749666,0.0001316035,0.0001242565,0.00005414217,0.0002050158,0.0006833773,0.0003755427],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008925913,"about_ca_system_score_gemma":0.000007745878,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001428014,"about_ca_topic_score_gemma":0.0007447349,"domain_scores_codex":[0.9995719,0.0000867988,0.00007092457,0.0000882895,0.00005733582,0.0001247898],"domain_scores_gemma":[0.999693,0.00001938406,0.00004630244,0.0002120447,0.000008477627,0.00002076613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004096913,0.0002827462,0.1494157,0.00003142982,0.000043036,0.00000108374,0.0003312712,0.0002740962,0.662392,0.005236458,0.1796015,0.002349724],"study_design_scores_gemma":[0.00007704072,0.00002435161,0.9718899,0.000002574166,0.000004722937,0.000003622955,0.0000149349,0.00001653621,0.001955946,0.003055556,0.02290503,0.0000497631],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931065,0.00008694056,0.000007742051,0.0009075664,0.0001635566,0.0001420485,0.0001125582,0.00000920992,0.005463887],"genre_scores_gemma":[0.998828,0.000008580661,0.00001247884,0.0008173719,0.00001869478,0.000002802817,0.00007223602,0.000001783012,0.0002380666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8224742,"threshold_uncertainty_score":0.9974552,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1512978277","doi":"10.3389/fmicb.2015.00771","title":"Primer and platform effects on 16S rRNA tag sequencing","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":528,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"National Research Council Canada","funders":"Joint Genome Institute; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Biology; Pyrosequencing; Primer (cosmetics); Shotgun sequencing; Computational biology; Illumina dye sequencing; DNA sequencing; Genetics; Deep sequencing; Metagenomics; Gene; Genome","retraction":null,"screen_n_in":null,"score":{"opus":0.01419018761367603,"gpt":0.2154435189789996,"spread":0.2012533313653236,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003471627,0.0001525741,0.0002677783,0.00007019279,0.00008886325,0.000005146129,0.0002468633,0.0002522011,0.0001786213],"category_scores_gemma":[0.00006673842,0.0001396812,0.00002592131,0.000109197,0.0003978753,0.00007464331,0.0002645891,0.0003751901,0.0002274476],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003027273,"about_ca_system_score_gemma":0.0000225584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002334862,"about_ca_topic_score_gemma":0.0003488623,"domain_scores_codex":[0.998946,0.0002396132,0.0001597529,0.0002780489,0.00002187675,0.0003547556],"domain_scores_gemma":[0.9995287,0.0001006649,0.00005858846,0.0002286215,0.000004303225,0.00007909438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002895452,0.00009697802,0.1459249,0.00001666852,0.00003542705,0.00003432544,0.001805257,0.0001775234,0.6436418,0.0002099939,0.2016477,0.006119899],"study_design_scores_gemma":[0.01357798,0.005349281,0.1106551,0.0001714353,0.0001017782,0.0006976416,0.002990753,0.0007274979,0.221024,0.0417252,0.6002468,0.002732584],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927974,0.0001756337,0.000152952,0.0001356512,0.0009056384,0.0002024121,0.00000558176,0.00002200608,0.005602746],"genre_scores_gemma":[0.9939024,0.00002912522,0.003854547,0.001764409,0.00003568309,0.00001008691,0.00004571745,0.00001138849,0.000346674],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4226178,"threshold_uncertainty_score":0.5696035,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1798521112","doi":"10.1046/j.1462-2920.2003.00460.x","title":"Geographical isolation in hot spring cyanobacteria","year":2003,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":519,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Lineage (genetic); Biological dispersal; Internal transcribed spacer; Phylogenetic tree; Allopatric speciation; Isolation by distance; Evolutionary biology; Genetic diversity; Hot spring; Ecology; Genetics; Genetic structure; Genetic variation; Gene; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.004773713674336749,"gpt":0.1823672727847215,"spread":0.1775935591103848,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002489152,0.0001702693,0.0001988572,0.00005460913,0.0001298245,0.000005277234,0.0002153254,0.000235515,0.02052872],"category_scores_gemma":[0.00001587199,0.0001771224,0.00005998766,0.0001056613,0.0004739145,0.00009112649,0.0002057351,0.0003363753,0.001819119],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001680954,"about_ca_system_score_gemma":0.000004379531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000145804,"about_ca_topic_score_gemma":0.001079418,"domain_scores_codex":[0.9985217,0.0004700458,0.0002445977,0.0003385421,0.00002328052,0.0004017892],"domain_scores_gemma":[0.999538,0.00007390854,0.00006461242,0.0002693863,4.198689e-7,0.00005365766],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000335464,0.0001252303,0.2759345,8.377894e-7,0.00000488137,0.000003186321,0.00007925853,0.0000750913,0.7234023,0.0001249991,0.0001251805,0.00009101323],"study_design_scores_gemma":[0.0007907741,0.0001820485,0.9006202,0.000004217623,0.000008047009,0.0001020734,0.00006962677,0.00001742453,0.02781542,0.0006218666,0.06941314,0.0003551937],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967482,0.00003916121,0.00006265652,0.00004409658,0.0001840172,0.0001629072,0.00001124119,0.00001863663,0.002729091],"genre_scores_gemma":[0.9985324,0.00004071074,0.0007197991,0.0004841848,0.00001090665,0.00001171544,0.00007027781,0.00001281166,0.0001171896],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6955869,"threshold_uncertainty_score":0.9989581,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2988778168","doi":"10.1016/j.cell.2019.10.008","title":"Global Trends in Marine Plankton Diversity across Kingdoms of Life","year":2019,"lang":"en","type":"article","venue":"Cell","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":512,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Fonds Français pour l'Environnement Mondial; Prince Albert II of Monaco Foundation; Institut Universitaire de France; Centre National de la Recherche Scientifique; Ministerio de Economía y Competitividad; European Commission; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; National Aeronautics and Space Administration; Canada Foundation for Innovation; Fondation Tara Océan; King Abdullah University of Science and Technology; European Molecular Biology Laboratory; Région Bretagne; Voice Foundation; Harvard University; Agence Nationale de la Recherche; Ocean Foundation; European Research Council; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Plankton; Biology; Ecology; Marine ecosystem; Ecosystem; Marine life; Archaea; Diversity (politics); Temperate climate; Biodiversity; Oceanography; Bacteria; Paleontology","retraction":null,"screen_n_in":null,"score":{"opus":0.01137499328713214,"gpt":0.2287489898235072,"spread":0.217373996536375,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009647924,0.00004738727,0.0001051709,0.000008582945,0.0000533183,0.00000135447,0.0002321146,0.00006603968,0.01477945],"category_scores_gemma":[0.000003258021,0.00004692325,0.00002509337,0.0001270784,0.0001039597,0.00003594645,0.001253272,0.00008149126,0.0004189763],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004685088,"about_ca_system_score_gemma":0.000002458727,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003522764,"about_ca_topic_score_gemma":0.007351817,"domain_scores_codex":[0.9996052,0.00005310425,0.00007405203,0.00009410715,0.00003491282,0.0001386157],"domain_scores_gemma":[0.9997545,0.00002214847,0.00003743218,0.0001574513,0.000001279485,0.00002717437],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005873436,0.00008250686,0.9898156,0.000004714377,0.000001733659,9.939938e-7,0.0003832535,0.000454754,0.007157741,0.00001487175,0.001623385,0.0004017367],"study_design_scores_gemma":[0.000411035,0.00006481852,0.9961054,9.579906e-7,0.000001345445,4.082697e-7,0.00005528544,0.00002394977,0.0006980075,0.0002412632,0.002345478,0.00005201875],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9412505,0.000002570076,0.000001045068,0.00002176441,0.00008862416,0.00002821858,0.00001458378,0.000004752515,0.05858792],"genre_scores_gemma":[0.9988453,0.000002086107,0.00002504035,0.0001490089,0.000004260382,2.339912e-7,0.0000247345,0.000001297122,0.0009480271],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05763989,"threshold_uncertainty_score":0.9861212,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2983947643","doi":"10.1016/j.cell.2019.10.014","title":"Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome","year":2019,"lang":"en","type":"article","venue":"Cell","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":508,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Région Bretagne; Prince Albert II of Monaco Foundation; National Aeronautics and Space Administration; Fondation Veolia Environnement; King Abdullah University of Science and Technology; Eidgenössische Technische Hochschule Zürich; European Commission; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; European Research Council; Gordon and Betty Moore Foundation; Agence Nationale de la Recherche; Helmut Horten Stiftung; Ministerio de Economía y Competitividad; National Science Foundation","keywords":"Biology; Transcriptome; Biogeochemistry; Gene; Microbial population biology; Ecology; Evolutionary biology; Gene expression; Computational biology; Genetics; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01298878314535743,"gpt":0.2123614621024636,"spread":0.1993726789571062,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002057643,0.00009663277,0.0001153545,0.000005329126,0.0003513588,0.00001321719,0.0003802654,0.000075338,0.005846226],"category_scores_gemma":[0.000004247934,0.00006444393,0.00002841689,0.00005352186,0.0001998682,0.0000512228,0.0004120568,0.0003501691,0.0002752619],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002497174,"about_ca_system_score_gemma":0.000002880116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002189205,"about_ca_topic_score_gemma":0.0009966521,"domain_scores_codex":[0.9990818,0.0005237313,0.00006810982,0.0001073778,0.00005264227,0.0001663676],"domain_scores_gemma":[0.9994716,0.000095288,0.00003708377,0.0003528692,0.000002983769,0.00004014431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003708424,0.0001167952,0.02943646,0.00001361566,0.000007361599,6.467807e-7,0.001089127,0.00001655817,0.9668901,0.00001158124,0.002054554,0.0003261294],"study_design_scores_gemma":[0.001149272,0.0004782043,0.7780383,0.00001397061,0.00005884364,0.00001980716,0.0005376631,0.0002026463,0.1871625,0.003646097,0.02829166,0.000400994],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925091,0.00009405856,0.00000856492,0.0001885584,0.0001675514,0.0001403687,0.00001506323,0.00001549536,0.006861275],"genre_scores_gemma":[0.9987183,0.00003435432,0.00005781295,0.0007214364,0.00001468019,0.00000139523,0.0000217838,0.000004744248,0.0004254611],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7797275,"threshold_uncertainty_score":0.9950626,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3025757981","doi":"10.1038/s41579-020-0364-5","title":"Tara Oceans: towards global ocean ecosystems biology","year":2020,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":500,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"Agence Nationale de la Recherche","keywords":"Biology; Ecosystem; Ecology; Marine biology; Oceanography","retraction":null,"screen_n_in":null,"score":{"opus":0.02588084366135217,"gpt":0.3266574469973029,"spread":0.3007766033359507,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"category_scores_codex":[0.001040245,0.001353891,0.006183516,0.00008795841,0.0003045235,0.00002487304,0.002853176,0.005171926,0.008456209],"category_scores_gemma":[0.0003110756,0.0009962583,0.001578137,0.0009882011,0.0007746689,0.00008702683,0.001853055,0.004388839,0.01355503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008708406,"about_ca_system_score_gemma":0.0002229589,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001177107,"about_ca_topic_score_gemma":0.0005838218,"domain_scores_codex":[0.9906412,0.004838733,0.001791994,0.001568311,0.00005536706,0.001104363],"domain_scores_gemma":[0.9967447,0.0002867088,0.001310244,0.001358561,0.00002405851,0.0002757235],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001281044,0.00008396435,0.00003553063,0.003370601,0.0002155666,0.00002772616,0.00002522873,2.581723e-7,0.0001041452,0.0004119208,0.2570146,0.7386976],"study_design_scores_gemma":[0.0001826498,0.0002229728,0.000002216083,0.001368801,0.0005467489,0.0009400668,0.000002324001,6.140552e-7,0.000001338622,0.0003063643,0.9955649,0.0008610387],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00001100641,0.9890622,0.0000194827,0.0002158164,0.002129523,0.002337637,0.001283401,0.0001326147,0.00480834],"genre_scores_gemma":[0.00003069069,0.9915094,0.0004131355,0.00245534,0.0004992742,0.00006193549,0.004763262,0.00006936551,0.0001976278],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7385502,"threshold_uncertainty_score":0.9999212,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2032709772","doi":"10.1073/pnas.0707200104","title":"The power of species sorting: Local factors drive bacterial community composition over a wide range of spatial scales","year":2007,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":490,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Vlaamse regering; Fonds Wetenschappelijk Onderzoek; European Science Foundation; European Commission","keywords":"Metacommunity; Biological dispersal; Range (aeronautics); Ecology; Spatial ecology; Community structure; Spatial distribution; Sorting; Spatial variability; Relative species abundance; Abundance (ecology); Environmental science; Population; Biology; Geography; Remote sensing","retraction":null,"screen_n_in":null,"score":{"opus":0.02661240346769854,"gpt":0.2729892614193545,"spread":0.246376857951656,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.002156793,0.00007809441,0.0001661759,0.00004474741,0.0005203823,0.000005933201,0.0009508695,0.00009186582,0.0001997628],"category_scores_gemma":[0.0003093218,0.00004723146,0.00007821083,0.0002605621,0.005436943,0.0002025285,0.0004186568,0.0002735333,8.433182e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004212019,"about_ca_system_score_gemma":0.000009421017,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003187607,"about_ca_topic_score_gemma":0.00006526543,"domain_scores_codex":[0.998872,0.00005525904,0.0003868118,0.00008956518,0.0004542068,0.0001421399],"domain_scores_gemma":[0.9983867,0.0008598085,0.0006461841,0.00001818768,0.00006782577,0.0000212763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001115782,0.0001019752,0.1805582,0.00001327696,0.00001134823,1.613751e-9,0.00129148,0.00006245118,0.8139436,0.003554049,0.0002683255,0.00008369007],"study_design_scores_gemma":[0.0001042778,0.0000804922,0.7024784,0.00001673993,0.00000492324,6.707344e-7,0.0007137689,0.0000301215,0.2886697,0.007812095,0.00005324701,0.00003555156],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958506,0.00000722934,0.000008563144,0.0002926555,0.00003402539,0.0001176684,0.00001748593,0.000003086777,0.003668702],"genre_scores_gemma":[0.9997772,0.000007029407,0.0001136783,0.00006803442,0.00001522273,7.883392e-7,6.346462e-7,0.000001937846,0.00001550205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5252739,"threshold_uncertainty_score":0.9972697,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2789511815","doi":"10.1038/s41396-018-0078-0","title":"Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":489,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Lawrence Berkeley National Laboratory; Biological and Environmental Research; Office of Science; Austrian Science Fund; U.S. Department of Energy","keywords":"Candidatus; Phylum; Biology; Biogeochemical cycle; Sulfur cycle; Sulfur; Sulfate; Sulfite; Sulfur metabolism; Sulfite reductase; Green sulfur bacteria; Ecology; Botany; Bacteria; Genome; Phototroph; Genetics; Gene; Chemistry; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02113778191693179,"gpt":0.2280990819469996,"spread":0.2069613000300678,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000689991,0.00008376877,0.0001168808,0.00001214211,0.001686036,0.00001297721,0.0009230914,0.00006249404,0.01243049],"category_scores_gemma":[0.00001716083,0.00004538214,0.00008355,0.00007238915,0.001167836,0.0001070483,0.001101704,0.0004331813,0.0001934686],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004441871,"about_ca_system_score_gemma":0.00001181805,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001290223,"about_ca_topic_score_gemma":0.0005804151,"domain_scores_codex":[0.9990956,0.0003838921,0.000129616,0.00007823086,0.0001079708,0.0002047606],"domain_scores_gemma":[0.9993882,0.0001312157,0.0001513947,0.0002732055,0.00001069677,0.00004531471],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006289035,0.0003899882,0.1530399,0.000007556577,0.0001880504,0.00001026269,0.03310467,0.000249791,0.6339589,0.0003276548,0.1728519,0.005242367],"study_design_scores_gemma":[0.0006409877,0.0002844955,0.9585609,0.00001271458,0.00006495655,0.000238387,0.001148552,0.0001561078,0.01831393,0.01255896,0.007841623,0.0001783718],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957418,0.00001686206,0.000034616,0.001191818,0.000330155,0.00006599769,0.000004788137,0.000006529831,0.002607409],"genre_scores_gemma":[0.9986031,0.0000265095,0.00003027133,0.0009854258,0.0001703857,3.643786e-7,0.000001026631,0.000004492587,0.0001784183],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.805521,"threshold_uncertainty_score":0.9996136,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2088338211","doi":"10.1371/journal.pone.0027492","title":"Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":474,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Fisheries and Oceans Canada; Bedford Institute of Oceanography; Université Laval","funders":"Fisheries and Oceans Canada; ArcticNet; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Arctic; Thaumarchaeota; Biogeochemical cycle; Archaea; Trophic level; Sea ice; Ecology; Biology; Oceanography; Microbial population biology; Climate change; Environmental science","retraction":null,"screen_n_in":null,"score":{"opus":0.02532474573169172,"gpt":0.1972110540557148,"spread":0.1718863083240231,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002113907,0.0001267828,0.0001576329,0.00001383688,0.0004613278,0.000009985118,0.0004252394,0.0001288612,0.01257511],"category_scores_gemma":[0.0000381201,0.00009515992,0.00002817349,0.00007261366,0.0006070544,0.00008868669,0.0005525413,0.0007529031,0.0001885736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003712665,"about_ca_system_score_gemma":0.000005630045,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002381891,"about_ca_topic_score_gemma":0.02287313,"domain_scores_codex":[0.9989142,0.0005302351,0.0001278626,0.0001293386,0.00005890968,0.000239443],"domain_scores_gemma":[0.9992702,0.0001091549,0.00005736646,0.0004921388,0.00001022641,0.00006093399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006378738,0.001407801,0.8853415,0.00009034479,0.0001770889,0.000006625339,0.01537195,7.937084e-7,0.09091403,0.00002383298,0.005451633,0.0005765213],"study_design_scores_gemma":[0.0002995626,0.0003383502,0.9900273,0.00002904631,0.00009721438,0.00001498046,0.0002461868,0.00001435104,0.003256304,0.004771488,0.0007254517,0.0001797849],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977946,0.00001372151,9.466764e-7,0.0002130041,0.00005989362,0.0001933093,0.00004031837,0.00001904457,0.001665188],"genre_scores_gemma":[0.9971933,0.00001091419,0.0006539198,0.001696391,0.0000434933,0.000003684664,0.00002416145,0.00001103435,0.0003630579],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1046858,"threshold_uncertainty_score":0.9949569,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159512638","doi":"10.1126/science.1059707","title":"Contribution of Aerobic Photoheterotrophic Bacteria to the Carbon Cycle in the Ocean","year":2001,"lang":"en","type":"article","venue":"Science","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":471,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba; University of British Columbia","funders":"","keywords":"Anoxygenic photosynthesis; Phototroph; Facultative; Carbon cycle; Photic zone; Photosynthesis; Marine bacteriophage; Carbon fibers; Environmental science; Dissolved organic carbon; Total organic carbon; Bacteriochlorophyll; Ecology; Bacteria; Purple bacteria; Environmental chemistry; Chemistry; Botany; Biology; Phytoplankton; Ecosystem; Paleontology; Nutrient; Photosynthetic reaction centre; Materials science","retraction":null,"screen_n_in":null,"score":{"opus":0.007683345083553911,"gpt":0.229698409631562,"spread":0.2220150645480081,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001050192,0.00004918379,0.00006679723,0.00002462781,0.000214933,0.00001084711,0.0008862806,0.00002461549,0.0003521235],"category_scores_gemma":[0.00008504667,0.00002846372,0.00001553186,0.0006550619,0.0006956731,0.00007205105,0.0002133543,0.0001199024,0.00006334396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005273111,"about_ca_system_score_gemma":0.00001309018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007416862,"about_ca_topic_score_gemma":0.002888264,"domain_scores_codex":[0.9992526,0.0001888237,0.0001027292,0.0001297455,0.0001071939,0.0002189735],"domain_scores_gemma":[0.9995336,0.00006335122,0.00003800365,0.000331982,0.00000850521,0.0000245932],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003258521,0.0000604059,0.02485053,6.241549e-7,7.503899e-7,0.000002259103,0.001675862,0.002311022,0.9705598,0.00007843599,0.0001310156,0.0002966952],"study_design_scores_gemma":[0.0001656619,0.000180866,0.9827512,0.000005971018,0.000002706501,0.00002405368,0.0001533355,0.0008382516,0.009591064,0.001377774,0.004825945,0.00008317832],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997435,0.000005142789,0.000005975783,0.001101606,0.0001309749,0.0001977617,9.576994e-7,0.000004043975,0.001118592],"genre_scores_gemma":[0.9991182,0.000004878591,0.0000178656,0.0008241321,0.000009664776,0.000004388703,0.000001166058,0.000001286938,0.00001842026],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9609687,"threshold_uncertainty_score":0.3855506,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1965801259","doi":"10.1126/science.291.5512.2398","title":"Biogenic Carbon Cycling in the Upper Ocean: Effects of Microbial Respiration","year":2001,"lang":"en","type":"article","venue":"Science","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":466,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Photic zone; Respiration; Carbon cycle; Environmental science; Carbon dioxide; Cycling; Carbon fibers; Heterotroph; Atmospheric sciences; Ecology; Phytoplankton; Biology; Botany; Nutrient; Ecosystem; Bacteria; Geology","retraction":null,"screen_n_in":null,"score":{"opus":0.008057257444835358,"gpt":0.2344939418988718,"spread":0.2264366844540365,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008240507,0.00005147893,0.00006962795,0.00004785295,0.0001617514,0.000007916854,0.0005650981,0.00003856794,0.0001011708],"category_scores_gemma":[0.0001110192,0.0000376936,0.0000204188,0.000664089,0.0007890417,0.00008138238,0.0001511935,0.0001229368,0.00002825845],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004320652,"about_ca_system_score_gemma":0.00001877455,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004743173,"about_ca_topic_score_gemma":0.00107359,"domain_scores_codex":[0.9992766,0.0001673792,0.0001140104,0.0001493863,0.00009829293,0.0001943344],"domain_scores_gemma":[0.9995569,0.0001311911,0.00004597913,0.0002437362,0.000004842156,0.00001737241],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001122563,0.00004239172,0.07311521,0.000002392165,4.403632e-7,0.000002000593,0.0009113536,0.0002319756,0.92506,0.0000383605,0.00005343082,0.0005312097],"study_design_scores_gemma":[0.0003023758,0.0002020178,0.8731235,0.00001621703,0.000005415609,0.00001886331,0.00009925848,0.0004665335,0.1219018,0.001496751,0.0022413,0.0001259269],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969935,0.00002380842,0.000003948558,0.000171254,0.0001740886,0.0001273026,2.898879e-7,0.00000474078,0.002501077],"genre_scores_gemma":[0.9994238,0.00001282365,0.00006106385,0.0004507204,0.00001337051,0.000001413728,8.294838e-7,0.000001652266,0.00003434568],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8031582,"threshold_uncertainty_score":0.2907257,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2123416613","doi":"10.1111/j.1462-2920.2011.02679.x","title":"Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska","year":2012,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":464,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Biogeochemical cycle; Biology; Abundance (ecology); Vegetation (pathology); Nitrogen cycle; Cycling; Ecology; Nitrogen; Forestry","retraction":null,"screen_n_in":null,"score":{"opus":0.006842482831528311,"gpt":0.2381733589992185,"spread":0.2313308761676902,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003362774,0.0002175709,0.0004025692,0.00004930629,0.00009988307,0.000002627093,0.0003199227,0.0002639621,0.0006395599],"category_scores_gemma":[0.00003435691,0.0001991701,0.00006558977,0.0001765645,0.001350927,0.0001543275,0.0002466985,0.0002526492,0.00007834384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001517797,"about_ca_system_score_gemma":0.00001141078,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001339511,"about_ca_topic_score_gemma":0.0005473363,"domain_scores_codex":[0.9984214,0.0002884087,0.0004300282,0.0002758125,0.00005348214,0.0005309138],"domain_scores_gemma":[0.9991776,0.0001817137,0.0003912731,0.0001938544,0.000003859943,0.0000516975],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009544078,0.0004171925,0.457083,0.00001092662,0.00002921902,7.990217e-7,0.001763581,0.000145414,0.5403736,0.000002110263,0.000009268967,0.00006941303],"study_design_scores_gemma":[0.0007503301,0.0003132047,0.2353783,0.0000479452,0.00002339912,0.00004595982,0.0004583213,0.000007196745,0.7624182,0.000190723,0.0001447189,0.0002217641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990555,0.0003623423,0.000003628346,0.00002447965,0.00007504832,0.000260504,0.0001306373,0.00000966603,0.00007819447],"genre_scores_gemma":[0.999195,0.00004588038,0.0001525662,0.0001161757,0.00001537843,0.00001806439,0.0004271277,0.00001637457,0.00001341654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2220445,"threshold_uncertainty_score":0.8121921,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2123129893","doi":"10.1111/j.1574-6941.2011.01192.x","title":"Soil characteristics more strongly influence soil bacterial communities than land-use type","year":2011,"lang":"en","type":"article","venue":"FEMS Microbiology Ecology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":432,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Gammaproteobacteria; Biology; Firmicutes; Alphaproteobacteria; Soil water; Topsoil; Soil microbiology; Community structure; Abundance (ecology); Relative species abundance; 16S ribosomal RNA; Ecology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.02276808943320333,"gpt":0.2164025852475293,"spread":0.193634495814326,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000335165,0.0003819936,0.0006050953,0.00008722913,0.0004910035,0.00002060583,0.001054369,0.0007600212,0.01820845],"category_scores_gemma":[0.0001070062,0.0003710047,0.00009838926,0.0001649755,0.002197497,0.0002527114,0.001169506,0.0008273544,0.003476388],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001287055,"about_ca_system_score_gemma":0.00006754878,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004408795,"about_ca_topic_score_gemma":0.04953054,"domain_scores_codex":[0.9973211,0.0009212444,0.0004925928,0.0003812607,0.00003319151,0.0008505877],"domain_scores_gemma":[0.9983682,0.0003715708,0.000292767,0.0007922551,0.00005386679,0.0001213169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006095991,0.0003667886,0.726835,0.000009754992,0.0001061949,0.00002873879,0.003495544,0.000104108,0.2610436,0.0001064264,0.007180778,0.0001134167],"study_design_scores_gemma":[0.0007581847,0.0009302326,0.9687009,0.000009243781,0.00005059027,0.0002238796,0.0002689274,0.00002418234,0.002049482,0.0002562218,0.02621563,0.0005125562],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966798,0.00001116558,0.000004361051,0.0001084717,0.001430953,0.000261609,0.0001945667,0.0001053172,0.001203793],"genre_scores_gemma":[0.9958916,0.00007086331,0.0002172605,0.001400018,0.00009155805,0.00002158991,0.001525381,0.00003409494,0.0007476168],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2589942,"threshold_uncertainty_score":0.9998742,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1968289569","doi":"10.1128/aem.71.12.8201-8206.2005","title":"Distribution of Typical Freshwater Bacterial Groups Is Associated with pH, Temperature, and Lake Water Retention Time","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":428,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Betaproteobacteria; Actinobacteria; Verrucomicrobia; Ecology; Taxon; Proteobacteria; Biology; Environmental science; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.002928004983571202,"gpt":0.1503245137742725,"spread":0.1473965087907013,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001104569,0.0001535545,0.0002203208,0.00001231127,0.0001475619,0.00000636613,0.00008351243,0.0002448901,0.008041676],"category_scores_gemma":[0.000001468198,0.0001080302,0.00002323922,0.00002220785,0.0007742431,0.00005842961,0.0002343232,0.0001691548,0.0001829122],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004146372,"about_ca_system_score_gemma":0.000001395008,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008982802,"about_ca_topic_score_gemma":0.0003726802,"domain_scores_codex":[0.999214,0.00008502708,0.0001689152,0.0002622558,0.0000249052,0.0002449009],"domain_scores_gemma":[0.9997485,0.00002768797,0.00005444012,0.0001237526,0.000001117966,0.00004445816],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002133032,0.0001107068,0.003236835,0.00000247453,0.00003116243,6.556524e-7,0.0002077499,0.000005411491,0.994155,0.00001813606,0.001766239,0.0002523653],"study_design_scores_gemma":[0.003849898,0.0009707775,0.2762497,0.00001814264,0.0001388889,0.0001822494,0.00010681,0.00004333775,0.6141439,0.000594798,0.1029503,0.0007512278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990209,0.00001254984,0.000003504639,0.0001451193,0.00002384566,0.000149481,0.0004777392,0.00001129214,0.0001555317],"genre_scores_gemma":[0.9933035,0.00002983897,0.00006054197,0.0003290085,0.00002565034,0.000007294944,0.006052022,0.000009082769,0.000183047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.380011,"threshold_uncertainty_score":0.9928651,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3092816750","doi":"10.1073/pnas.1919139117","title":"Global diversity of microbial communities in marine sediment","year":2020,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":415,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Alfred P. Sloan Foundation; Deutsche Forschungsgemeinschaft; Center for Dark Energy Biosphere Investigations; Japan Agency for Marine-Earth Science and Technology; Canadian Institute for Advanced Research; National Science Foundation","keywords":"Species richness; Sediment; Ecology; Biodiversity; Sedimentary rock; Environmental science; Total organic carbon; Archaea; Oceanography; Biomass (ecology); Biology; Geology; Paleontology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.04191887359662571,"gpt":0.2637018740935111,"spread":0.2217830004968854,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005500204,0.0000485455,0.0001167276,0.00002066212,0.0001688999,0.000002083821,0.0009931625,0.00005056806,0.0004579533],"category_scores_gemma":[0.00007655068,0.00003729657,0.0000360472,0.0004469364,0.001538074,0.0001510392,0.002134969,0.0001219774,0.000002238778],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004133761,"about_ca_system_score_gemma":0.000007066285,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000453684,"about_ca_topic_score_gemma":0.0000194348,"domain_scores_codex":[0.9993852,0.0000197691,0.0001779663,0.0000780647,0.0002510374,0.00008797777],"domain_scores_gemma":[0.999698,0.00006332877,0.000193495,0.000006057844,0.00002116985,0.00001799375],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005570726,0.00008794796,0.7628775,0.00003169959,0.000007393513,3.372851e-9,0.001625917,0.0007683018,0.2261534,0.00591787,0.002357956,0.000116217],"study_design_scores_gemma":[0.0002328127,0.00009526307,0.9231568,0.00001685909,0.000005703652,0.000001552329,0.0005877831,0.0002313033,0.04933297,0.02601375,0.0002659681,0.00005925884],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880932,0.000005128838,1.195385e-7,0.002284151,0.000007462914,0.00007295643,0.00001773044,0.000002428663,0.009516826],"genre_scores_gemma":[0.9987931,0.000008099935,0.0004242666,0.0007554773,0.000007683643,6.029948e-7,2.908344e-7,6.323432e-7,0.000009862513],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1768205,"threshold_uncertainty_score":0.5667098,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2093882865","doi":"10.1073/pnas.1304246110","title":"Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":400,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Canadian Institute for Advanced Research; Ministerio de Ciencia e Innovación; Joint Genome Institute; Gordon and Betty Moore Foundation; U.S. Department of Energy; National Science Foundation","keywords":"Biology; Bacterioplankton; Genome; Metagenomics; Archaea; Comparative genomics; Horizontal gene transfer; Genomics; Bacterial genome size; Gene; Plankton; Evolutionary biology; Genetics; Ecology; Phytoplankton","retraction":null,"screen_n_in":null,"score":{"opus":0.0321002248333707,"gpt":0.2674712505188941,"spread":0.2353710256855234,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001012825,0.0000510248,0.00009395424,0.00002328584,0.0001406664,0.000006258654,0.0007214411,0.00004305666,0.000352814],"category_scores_gemma":[0.00009526762,0.00002980708,0.00001978422,0.0002560815,0.00115663,0.000247111,0.0003061616,0.0001331422,0.000002786327],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001502978,"about_ca_system_score_gemma":0.000006147906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009129761,"about_ca_topic_score_gemma":0.000002156348,"domain_scores_codex":[0.9993289,0.0000238023,0.0001893264,0.0001116708,0.0002484521,0.00009781011],"domain_scores_gemma":[0.9995794,0.0001612004,0.0002182794,0.000009021417,0.00002038567,0.00001172148],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000007666753,0.00004530884,0.4123048,0.00002521101,0.000004614225,1.855087e-9,0.001181912,0.000590855,0.5834332,0.002070479,0.0002820585,0.00005392785],"study_design_scores_gemma":[0.0000604722,0.00005001638,0.9779695,0.00001648576,0.000003315434,0.000002427359,0.000222526,0.0002536348,0.009401314,0.01194519,0.0000412603,0.00003387611],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974054,0.00003411565,6.705947e-8,0.000809835,0.000006501776,0.0001356835,0.000006853417,0.000001339205,0.001600265],"genre_scores_gemma":[0.9994214,0.00004080707,0.0003957142,0.0001063813,0.000005773918,0.000001391396,1.450278e-7,8.775686e-7,0.00002753089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5740318,"threshold_uncertainty_score":0.4261653,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2579374544","doi":"10.1038/nature20803","title":"Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus","year":2017,"lang":"en","type":"article","venue":"Nature","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":393,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Office of Science; Joint Genome Institute; Sight Research UK; Royal Society; NERC Biomolecular Analysis Facility; Natural Environment Research Council; U.S. Department of Energy","keywords":"Diatom; Biology; Allele; Ploidy; Psychrophile; Genome; Genetics; Temperate climate; Adaptation (eye); Gene; Evolutionary biology; Ecology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.006831142466062958,"gpt":0.2245047129464965,"spread":0.2176735704804336,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001030343,0.00006400902,0.00009610805,0.000006685813,0.0006571579,0.000006076659,0.0008963163,0.0006892334,0.001566069],"category_scores_gemma":[0.00008879327,0.00004721956,0.00005834135,0.00003727064,0.0003817945,0.00006114417,0.0006394691,0.001274827,0.00008028408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000058308,"about_ca_system_score_gemma":0.00001908118,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002669657,"about_ca_topic_score_gemma":0.001168763,"domain_scores_codex":[0.9995531,0.00007931396,0.00008125089,0.0001033243,0.00006593201,0.0001170519],"domain_scores_gemma":[0.999105,0.00004782506,0.0001280749,0.0006882054,0.000008639274,0.00002224849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001297,0.0002903298,0.4020467,0.00001516951,0.00007600817,0.000005424857,0.0008061349,0.0008585625,0.4613063,0.006365972,0.1267375,0.00136212],"study_design_scores_gemma":[0.0001396322,0.00001544036,0.8852605,0.000003177755,0.000009593215,0.000003361386,0.00001011976,0.00007024965,0.003502434,0.001722569,0.109202,0.00006098501],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9829885,0.000116189,0.000002534224,0.001205799,0.0003604129,0.0001026578,0.00003146394,0.000006818484,0.01518566],"genre_scores_gemma":[0.9982614,0.00001737135,0.0002345467,0.0008936378,0.00002874701,0.000001956344,0.000006011462,0.00000438891,0.0005519447],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4832138,"threshold_uncertainty_score":0.9993466,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2169289406","doi":"10.1073/pnas.0503674102","title":"An obligately photosynthetic bacterial anaerobe from a deep-sea hydrothermal vent","year":2005,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":365,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"University of British Columbia; National Aeronautics and Space Administration; U.S. Department of Energy; National Science Foundation","keywords":"Photosynthesis; Hydrothermal vent; Sulfur; Astrobiology; Photic zone; Green sulfur bacteria; Phototroph; Biology; Hydrothermal circulation; Botany; Ecology; Environmental chemistry; Chemistry; Phytoplankton; Nutrient; Paleontology","retraction":null,"screen_n_in":null,"score":{"opus":0.02303065318901286,"gpt":0.2702451855441769,"spread":0.2472145323551641,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000651291,0.00008227494,0.0001245037,0.00003823863,0.0002519612,0.00001253296,0.001138152,0.00009345796,0.002604684],"category_scores_gemma":[0.00007521673,0.00005933923,0.00005158932,0.0002564535,0.00125788,0.0004403472,0.0002195317,0.0001623345,0.00002439576],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000465611,"about_ca_system_score_gemma":0.000009540952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001098493,"about_ca_topic_score_gemma":0.0000118349,"domain_scores_codex":[0.9990479,0.000025106,0.0002200056,0.0001959238,0.0003560253,0.0001549793],"domain_scores_gemma":[0.9996205,0.00007539908,0.0002319812,0.00001378125,0.00001946025,0.00003890785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003203462,0.000100472,0.005988214,0.000002588103,0.000005708847,2.304727e-9,0.0003167749,0.0006061196,0.9909004,0.001118422,0.0003137719,0.000615471],"study_design_scores_gemma":[0.0001914832,0.0001029664,0.229538,0.00001621563,0.000009590551,0.00000335125,0.00005889907,0.002774474,0.7446298,0.02094598,0.001622199,0.0001070548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937299,0.00001397068,4.009614e-7,0.001073181,0.00002002707,0.0001112098,0.00001856404,0.000008207118,0.005024514],"genre_scores_gemma":[0.9983043,0.000007773959,0.00105452,0.0005229017,0.00007845566,0.000005160307,7.068663e-7,0.000003073931,0.00002311003],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2462706,"threshold_uncertainty_score":0.998307,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2212946566","doi":"10.1085/jgp.201411296","title":"Bacterial responses to osmotic challenges","year":2015,"lang":"en","type":"article","venue":"The Journal of General Physiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":358,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Biology; Natural (archaeology); Ecology; Extreme environment; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.05350301829898998,"gpt":0.273459817898222,"spread":0.219956799599232,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009133648,0.00009724306,0.0002269777,0.00003241342,0.00009933969,0.000003450187,0.0006012128,0.00007262488,0.001176568],"category_scores_gemma":[0.0001536238,0.00005983576,0.00005259897,0.00007480128,0.0002310073,0.00007065597,0.0003310299,0.0002439161,0.0004491115],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000557136,"about_ca_system_score_gemma":0.00003291211,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009328942,"about_ca_topic_score_gemma":0.0001866807,"domain_scores_codex":[0.9981444,0.001261959,0.0002276415,0.00007647042,0.00007913676,0.0002104249],"domain_scores_gemma":[0.9992368,0.0002078536,0.0001527525,0.0002512664,0.00002881355,0.0001224754],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001805995,0.0000663128,0.000075075,0.000001372199,0.00002397267,0.000003047526,0.001515992,0.002502016,0.9526024,0.0001218241,0.04038702,0.0008949356],"study_design_scores_gemma":[0.002819079,0.01001207,0.6384079,0.0000218467,0.0001361159,0.0009248,0.001088327,0.00008358651,0.02938954,0.08044928,0.2360343,0.0006331878],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937659,0.0001062719,0.00001236954,0.004215241,0.0006654852,0.0000628764,0.000001670872,0.000005039734,0.001165181],"genre_scores_gemma":[0.9974437,0.0001111193,0.0003267271,0.001310518,0.0004303323,9.089849e-7,0.000001430972,0.00000702913,0.000368199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9232129,"threshold_uncertainty_score":0.9997365,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2603394147","doi":"10.3389/fmicb.2017.00494","title":"Comparative Evaluation of Four Bacteria-Specific Primer Pairs for 16S rRNA Gene Surveys","year":2017,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":355,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Thompson Rivers University","funders":"Fonds Wetenschappelijk Onderzoek; Vlaamse regering; Vlaams Supercomputer Centrum","keywords":"Biology; 16S ribosomal RNA; Primer (cosmetics); Metagenomics; In silico; Alphaproteobacteria; Genetics; Bacterial taxonomy; Phylogenetic tree; Bacteria; Ribosomal RNA; Computational biology; Microbiology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.074623153511594,"gpt":0.2988727421106035,"spread":0.2242495885990095,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002609792,0.0001475189,0.0004423623,0.00005522766,0.0002950154,0.000008978107,0.0006644402,0.0002287342,0.001430394],"category_scores_gemma":[0.00008631583,0.0001452539,0.00007450338,0.00004687132,0.0008934439,0.000101015,0.000256176,0.0001748457,0.00005296278],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001602037,"about_ca_system_score_gemma":0.00003086164,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001990279,"about_ca_topic_score_gemma":0.001205801,"domain_scores_codex":[0.9975505,0.001512816,0.0002988827,0.0003003875,0.00003740215,0.0002999665],"domain_scores_gemma":[0.99891,0.0001179979,0.0003185732,0.0005800732,0.00004414143,0.00002923274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001329645,0.0001041026,0.07842335,0.000005107896,0.00004574647,4.15358e-7,0.0004612769,0.0002330897,0.8674869,0.00001433147,0.05053094,0.002561805],"study_design_scores_gemma":[0.0024662,0.0003130607,0.8616031,0.00001223856,0.00004510107,0.00001049518,0.0001476914,0.0004948182,0.09945808,0.003366728,0.03175204,0.0003304748],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935385,0.0001324446,0.003167557,0.0001080692,0.001372405,0.0006245882,0.0001087556,0.000007108703,0.0009405682],"genre_scores_gemma":[0.9883784,0.00003823345,0.01104164,0.00005497636,0.00003324864,0.0000426273,0.0002688043,0.000008789637,0.0001332491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7831797,"threshold_uncertainty_score":0.9994825,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}