{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":266,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":266,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"5f9dc0787cc8","filters":{"topic":"Plant and Fungal Species Descriptions"}},"results":[{"id":"W2809850047","doi":"10.1038/s41477-018-0188-8","title":"Fern genomes elucidate land plant evolution and cyanobacterial symbioses","year":2018,"lang":"en","type":"article","venue":"Nature Plants","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":540,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; Dalhousie University","funders":"Government of Jiangxi Province; Deutsche Forschungsgemeinschaft; National Science Foundation","keywords":"Azolla; Biology; Fern; Symbiosis; Genome; Botany; Horizontal gene transfer; Plant evolution; Gene; Evolutionary biology; Genetics; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.005977688530304805,"gpt":0.2121294001322067,"spread":0.2061517116019018,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005498866,0.0001176792,0.00009764422,0.00003618636,0.0001242532,0.00003827894,0.0001009291,0.0003030672,0.000032692],"category_scores_gemma":[0.0000218634,0.00009971575,0.00002496947,0.00003226653,0.0000718048,0.000005679823,0.00006957352,0.0001297256,0.0000328071],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001160501,"about_ca_system_score_gemma":0.00002217553,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001526462,"about_ca_topic_score_gemma":0.0002549693,"domain_scores_codex":[0.9993681,0.00002036753,0.00009140601,0.0002394768,0.00008462134,0.0001960541],"domain_scores_gemma":[0.999722,0.000006938286,0.0000371782,0.0001351641,0.00003214338,0.0000665861],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002973884,0.00002205755,0.02845156,0.00000641143,0.00004381192,0.00000745503,0.00002492837,1.076414e-7,0.9631062,0.0001735249,0.007497269,0.000369317],"study_design_scores_gemma":[0.001036204,0.0004363251,0.2367176,0.00003776265,0.0000372563,0.0004032633,0.00004120656,0.00004447253,0.2527401,0.0001762979,0.5078855,0.0004440082],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942077,0.001638153,0.00004059986,0.00005921102,0.0006839818,0.00008357405,0.001094865,0.00001915327,0.002172726],"genre_scores_gemma":[0.9964464,0.0004943994,0.00008475899,0.0001595522,0.00126031,0.00000294602,0.001076428,0.000009175205,0.0004659741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7103661,"threshold_uncertainty_score":0.406629,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2110245550","doi":"10.2307/2656749","title":"Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms","year":2000,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":362,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Science Foundation","keywords":"NdhF; Biology; Clade; Monophyly; Botany; Eudicots; Taxon; Phylogenetic tree; Phylogenetics; Coalescent theory; Evolutionary biology; Chloroplast DNA; Taxonomy (biology); Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.009175584408447226,"gpt":0.2201926831592669,"spread":0.2110170987508197,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000150509,0.00007328807,0.0001675809,0.00001305709,0.00006158095,0.000005721843,0.0002716376,0.00002580468,0.00007207392],"category_scores_gemma":[0.00003829868,0.00004127734,0.0002343453,0.00009398221,0.0003271321,0.000003736266,0.00003042018,0.00006782718,3.677515e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004532757,"about_ca_system_score_gemma":0.00005385542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002067707,"about_ca_topic_score_gemma":0.00004127406,"domain_scores_codex":[0.9993919,0.00003822538,0.0002686673,0.00007096553,0.0001119852,0.0001182394],"domain_scores_gemma":[0.9993697,0.00002912938,0.0002782221,0.0001894451,0.00009991907,0.00003359795],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002536935,0.00005313481,0.0247152,0.00000416333,0.0001146927,5.724388e-7,0.00007981835,0.0000534633,0.9543642,0.00001904805,0.001893026,0.01844896],"study_design_scores_gemma":[0.0006410287,0.001100325,0.5710179,0.00004461787,0.0001249236,0.0001336085,0.0007352465,0.0001728339,0.3256471,0.00008229144,0.1001311,0.0001689359],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978285,0.0008114753,0.0002721057,0.0001468305,0.00009242415,0.00006884853,0.0000786073,8.141586e-7,0.0007003596],"genre_scores_gemma":[0.9988816,0.0003101306,0.0002681578,0.0001193306,0.0001803079,0.000001262453,0.000001418196,0.000006304176,0.0002314336],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6287171,"threshold_uncertainty_score":0.1683241,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2101988905","doi":"10.1111/j.1471-8286.2007.02002.x","title":"Testing candidate plant barcode regions in the Myristicaceae","year":2007,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":276,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Ontario Genomics Institute; Genome Canada","keywords":"DNA barcoding; Biology; rpoB; Evolutionary biology; Barcode; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01420765802574436,"gpt":0.2292684772102339,"spread":0.2150608191844896,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004342529,0.0001375654,0.0001256485,0.00008186558,0.0001608769,0.00002838696,0.0003468826,0.0001614291,0.00001323607],"category_scores_gemma":[0.0002917118,0.0001079376,0.0000564503,0.0001989594,0.0001506903,0.000002167023,0.00009313715,0.000191078,0.00001809907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001771771,"about_ca_system_score_gemma":0.00002682377,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006935181,"about_ca_topic_score_gemma":0.001632413,"domain_scores_codex":[0.9988615,0.0001153054,0.000213522,0.0002786771,0.000108951,0.0004220588],"domain_scores_gemma":[0.9994431,0.000109902,0.0000605994,0.0002945132,0.00002873239,0.00006311127],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001290755,0.0001342237,0.09168139,0.000008945543,0.00005380536,0.0007423176,0.0003933836,0.0001887291,0.8978664,0.001884573,0.006498597,0.0004186143],"study_design_scores_gemma":[0.00102242,0.0005730178,0.547936,0.00002645102,0.00006726559,0.0009449782,0.001260256,0.0002543659,0.02704776,0.0006763843,0.4196325,0.0005585782],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984686,0.0004161961,0.001040658,0.0004791584,0.00008328398,0.0001710248,0.00003695475,0.00001561977,0.01307107],"genre_scores_gemma":[0.9976655,0.00001984145,0.0004777503,0.001323085,0.0001275701,0.00001866509,0.0001310953,0.00001356673,0.0002229611],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8708186,"threshold_uncertainty_score":0.4401567,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2067127913","doi":"10.1038/nature05612","title":"Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree","year":2007,"lang":"en","type":"article","venue":"Nature","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":234,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Phylogenetic tree; Tree (set theory); Biology; Phylogenetic network; Evolutionary biology; Phylogenetics; Mathematics; Combinatorics; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.007090798983348428,"gpt":0.2293277671420723,"spread":0.2222369681587238,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001457401,0.0001006754,0.00007840552,0.00001355441,0.0001457317,0.00003253183,0.0003704925,0.0004947665,0.00007371942],"category_scores_gemma":[0.0001115587,0.00005827532,0.0001383608,0.0001654971,0.0001169254,0.00000183831,0.00009292582,0.0004431299,0.00001788525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007955336,"about_ca_system_score_gemma":0.00009828235,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003462054,"about_ca_topic_score_gemma":0.0005776883,"domain_scores_codex":[0.9993448,0.00002672266,0.0001241566,0.0001700765,0.0001554095,0.0001788661],"domain_scores_gemma":[0.9994086,0.00001704289,0.00005685297,0.0004077278,0.00004498709,0.00006479074],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006320074,0.00002202552,0.002342178,0.000004009551,0.00003522162,0.000002027926,0.0000760603,0.000007921113,0.9395254,0.0002775322,0.05556233,0.002082146],"study_design_scores_gemma":[0.0003371162,0.00005299696,0.05859971,0.00001022552,0.00003636706,0.00003899985,0.00004955435,0.00000946164,0.5537148,0.0002389796,0.3867996,0.0001121594],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9846389,0.005281338,0.00007661608,0.001091066,0.0004379331,0.0001696671,0.00003678085,0.000006341019,0.008261318],"genre_scores_gemma":[0.989781,0.00007710568,0.00007637843,0.001519348,0.0003450794,0.000001224394,0.00004265149,0.00001035823,0.00814691],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3858105,"threshold_uncertainty_score":0.3816092,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2544757671","doi":"10.1111/1755-0998.12626","title":"Strategies for complete plastid genome sequencing","year":2016,"lang":"en","type":"review","venue":"Molecular Ecology Resources","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":229,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Natural Environment Research Council; Sight Research UK","keywords":"Biology; Plastid; Genome; Computational biology; Whole genome sequencing; Sequence assembly; Plant evolution; DNA sequencing; Sequence (biology); Phylogenetic tree; Genetics; Evolutionary biology; Gene; Chloroplast; Transcriptome","retraction":null,"screen_n_in":null,"score":{"opus":0.04252937447206097,"gpt":0.2784286640402485,"spread":0.2358992895681875,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001683539,0.0004918929,0.0009894681,0.0001519089,0.0002114919,0.00008239485,0.0005818976,0.0007098095,0.00006108092],"category_scores_gemma":[0.00006908404,0.0003879719,0.0006317206,0.00009090226,0.0002183785,0.000004632672,0.0002233945,0.0001892253,0.0001057585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009347295,"about_ca_system_score_gemma":0.0003197405,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002636469,"about_ca_topic_score_gemma":0.00003695244,"domain_scores_codex":[0.9979475,0.0001718375,0.0004770867,0.000711781,0.0001059929,0.0005857591],"domain_scores_gemma":[0.9989616,0.00009219157,0.0002920429,0.0004634438,0.00007277736,0.0001178894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004906793,0.0003767354,0.00005066059,0.02677528,0.009762418,0.0008129346,0.000483455,0.0001830054,0.6873864,0.0117344,0.0670606,0.1948834],"study_design_scores_gemma":[0.0002327807,0.0002812601,0.000004995803,0.0004354495,0.0002752706,0.0001596154,0.00005267977,0.000002283134,0.00004998119,0.00008962102,0.9979363,0.0004797818],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0006744559,0.9897629,0.002611284,0.00002854717,0.000288822,0.0008361759,0.001278851,0.00003882054,0.004480122],"genre_scores_gemma":[0.0002705528,0.9944588,0.0005258766,0.0001710144,0.0005865059,0.000437783,0.001746976,0.00009480811,0.001707689],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9308757,"threshold_uncertainty_score":0.9998572,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2164783693","doi":"10.3732/ajb.92.11.1911","title":"Phylogeny of <i>Flaveria</i> (Asteraceae) and inference of C<sub>4</sub> photosynthesis evolution","year":2005,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"Ontario Innovation Trust","keywords":"Biology; Phylogenetics; Clade; Phylogenetic tree; Systematics; Genus; Molecular phylogenetics; Botany; Evolutionary biology; Taxonomy (biology); Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.004752690091578175,"gpt":0.2052814618689689,"spread":0.2005287717773907,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001268342,0.00008909356,0.0002377026,0.00005497609,0.00002422366,0.000005778933,0.0001122382,0.00003634699,0.000007521534],"category_scores_gemma":[0.00007405064,0.00007970191,0.00009201208,0.0001009689,0.000232331,0.00001042735,0.00003614235,0.00006994009,0.000001075282],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001580182,"about_ca_system_score_gemma":0.00005634168,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001097634,"about_ca_topic_score_gemma":0.00002412362,"domain_scores_codex":[0.9992822,0.00004650421,0.0003367588,0.00009311778,0.000124424,0.0001170261],"domain_scores_gemma":[0.999154,0.00002945933,0.0004885119,0.0001172636,0.0001421927,0.00006861335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001495251,0.00005277597,0.004843009,0.000004910436,0.00005743997,0.000001250481,0.00004917174,0.00001868692,0.9715351,0.00002378565,0.0001613956,0.02310299],"study_design_scores_gemma":[0.0002716699,0.0007796221,0.03666003,0.00004519452,0.00005016824,0.0001033657,0.0002498858,0.00004593242,0.9583111,0.00002080264,0.003358561,0.0001036249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973882,0.0008096202,0.001336892,0.00004848395,0.00004997049,0.00003516537,0.00003859552,0.000001295408,0.0002917365],"genre_scores_gemma":[0.9973215,0.001380595,0.001087863,0.00005104677,0.0001364033,6.869637e-7,0.000001547621,0.000006988407,0.00001337324],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03181702,"threshold_uncertainty_score":0.3250149,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2139759656","doi":"10.1080/10635150802426473","title":"A Comparative Study in Ancestral Range Reconstruction Methods: Retracing the Uncertain Histories of Insular Lineages","year":2008,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Vicariance; Biological dispersal; Biology; Range (aeronautics); Cladogenesis; Lineage (genetic); Context (archaeology); Paleontology; Evolutionary biology; Phylogenetics; Clade; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.09194497609525268,"gpt":0.3470887058935179,"spread":0.2551437297982652,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006283579,0.0001070897,0.0004068303,0.00005357213,0.00008224543,0.000004122375,0.0001501494,0.000108403,0.000004351683],"category_scores_gemma":[0.0001537499,0.00006943705,0.00005832084,0.0001313902,0.0002240741,0.000003988273,0.00004221869,0.0001072113,9.425545e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002752966,"about_ca_system_score_gemma":0.00004000557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009102778,"about_ca_topic_score_gemma":0.0002956005,"domain_scores_codex":[0.9983451,0.0008518156,0.0004416349,0.0001843649,0.00004831251,0.0001288208],"domain_scores_gemma":[0.9993877,0.0000928007,0.0002101474,0.0002294714,0.00006161741,0.00001827097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001903955,0.0002784233,0.3137833,0.001699038,0.0003210358,0.00001241519,0.01092719,0.0001296529,0.671438,0.0009947175,0.00007869026,0.0001471511],"study_design_scores_gemma":[0.01170224,0.01174169,0.4439484,0.004862996,0.0009310918,0.004487161,0.2123393,0.006828528,0.2941063,0.003664316,0.002079808,0.003308302],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943964,0.002370123,0.001919394,0.00003410126,0.000295789,0.0006757834,0.00001388368,0.000006674835,0.0002877766],"genre_scores_gemma":[0.9978624,0.00004450894,0.0018779,0.00001156356,0.00005797801,0.00008234911,0.00001386419,0.000003678619,0.00004573843],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3773318,"threshold_uncertainty_score":0.2831561,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006223948","doi":"10.1111/j.1759-6831.2011.00119.x","title":"Features and distribution patterns of Chinese endemic seed plant species","year":2011,"lang":"en","type":"article","venue":"Journal of Systematics and Evolution","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":108,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"University of British Columbia; National Natural Science Foundation of China","keywords":"Endemism; Liana; Shrub; Vine; Biology; Altitude (triangle); Species richness; Herb; Ecology; Botany; Medicinal herbs; Traditional medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01338687328951554,"gpt":0.1997038581125795,"spread":0.186316984823064,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002013762,0.00007107934,0.0001694369,0.00003507527,0.00003882974,0.000009957782,0.00004817149,0.0000705409,0.000002794379],"category_scores_gemma":[0.00005061839,0.00004926005,0.00004594338,0.0000278666,0.00003013144,0.000008526644,0.00002534324,0.00005691985,2.004724e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001419797,"about_ca_system_score_gemma":0.00001347088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001815617,"about_ca_topic_score_gemma":0.00002868593,"domain_scores_codex":[0.9994515,0.00003074708,0.0002953246,0.00005655673,0.00009574513,0.00007016039],"domain_scores_gemma":[0.9995028,0.000008873925,0.0002914254,0.00006261641,0.00008972733,0.00004457922],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000158506,0.00007274177,0.5481807,0.0007077144,0.0001389697,0.000007255053,0.0005765618,0.00000329099,0.4462326,0.00293007,0.0009598718,0.00003167436],"study_design_scores_gemma":[0.0003147683,0.0002741648,0.9941972,0.0002563543,0.00005129006,0.001015373,0.0005439043,0.00006864171,0.002733873,0.0002759292,0.000190268,0.00007820379],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992302,0.001737538,0.005351826,0.00001303022,0.0001455843,0.00006137099,0.0001784838,0.000001347263,0.0002088106],"genre_scores_gemma":[0.9989883,0.0005737002,0.0001573105,0.00000394863,0.0001291543,7.189494e-7,0.00004213347,0.000003218763,0.0001015121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4460166,"threshold_uncertainty_score":0.2008767,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2916679361","doi":"10.1038/s41598-019-39161-x","title":"Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Institute of Botany, Chinese Academy of Sciences; National Taiwan University; Ministry of Science and Technology, Taiwan; University of Toronto; Chinese Academy of Sciences; National Natural Science Foundation of China; Kunming Institute of Botany, Chinese Academy of Sciences; Columbus State University","keywords":"Chloroplast DNA; Biology; Plastid; Taxus; Evolutionary biology; Genome; Endangered species; Botany; Genetics; Gene; Chloroplast; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.006000235253062795,"gpt":0.2158796410009006,"spread":0.2098794057478378,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006351332,0.00008891072,0.000175679,0.0001372121,0.00002782415,0.00001711552,0.00008975221,0.00005550002,0.00003899078],"category_scores_gemma":[0.0000923155,0.00008056218,0.00004976334,0.0002317815,0.0002240404,0.00001096949,0.00008626854,0.00004682894,0.000003403495],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000095784,"about_ca_system_score_gemma":0.00005475312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001699416,"about_ca_topic_score_gemma":0.00002550482,"domain_scores_codex":[0.9989577,0.00005718393,0.000277234,0.0003927699,0.000162674,0.0001524613],"domain_scores_gemma":[0.9993938,0.00003791415,0.00013359,0.0003350713,0.00006084889,0.00003875241],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003740207,0.00003406636,0.3363958,0.0002022915,0.00000683864,0.00000454888,0.00003040169,0.00005949544,0.6630259,0.00002257975,0.00008751918,0.00009312212],"study_design_scores_gemma":[0.0002294137,0.0001309846,0.3958318,0.0001682155,0.00001057161,0.00007859906,0.00006602811,0.00002911568,0.5976476,0.0001605748,0.00551504,0.0001320623],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973616,0.0008255473,0.00003150619,0.000002853712,0.0007227767,0.0002158785,0.00002011827,0.000003697382,0.0008159976],"genre_scores_gemma":[0.9976361,0.00007382864,0.0001156702,0.000001987066,0.00001073022,0.000008767851,0.00003041182,0.000006047848,0.002116412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06537831,"threshold_uncertainty_score":0.328523,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2609234600","doi":"10.1139/gen-2016-0191","title":"A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny","year":2017,"lang":"en","type":"article","venue":"Genome","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"Pacific Northwest Research Station; U.S. Forest Service; Thünen-Institut; Bundesministerium für Ernährung und Landwirtschaft; Deutsche Bundesstiftung Umwelt; Oregon State University; United States Agency for International Development; U.S. Department of Agriculture; U.S. Department of State; National Science Foundation","keywords":"Chloroplast DNA; Phylogenetic tree; Biology; Clade; Phylogenetics; Evolutionary biology; NdhF; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01231834940575159,"gpt":0.2001408950264262,"spread":0.1878225456206746,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001042378,0.0001264494,0.0001659451,0.0000580115,0.0001515063,0.00002007898,0.0001431392,0.0001107642,0.00001977577],"category_scores_gemma":[0.00005854963,0.0001259055,0.00007214863,0.000011755,0.0003011158,0.000005088667,0.0001378508,0.00004690384,0.000004012382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001610595,"about_ca_system_score_gemma":0.00004179551,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000195789,"about_ca_topic_score_gemma":0.00001119797,"domain_scores_codex":[0.9993278,0.0000138285,0.0001396917,0.0002660335,0.00006885699,0.000183747],"domain_scores_gemma":[0.9994401,0.00001040799,0.000126186,0.0002893775,0.00004122713,0.00009267439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009784009,0.00002345979,0.001927817,0.00003161434,0.0000852958,0.000001422726,0.00008927837,0.000006538161,0.9969346,0.00003546089,0.0006636293,0.0001030348],"study_design_scores_gemma":[0.00171994,0.001357023,0.4643611,0.00002994508,0.0001469273,0.0001014182,0.00006607739,0.0001270495,0.01684427,0.0001575795,0.5145897,0.0004989745],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926529,0.005432507,0.00002912208,0.00004109852,0.0001376343,0.0002260609,0.0003250404,0.000007028105,0.001148595],"genre_scores_gemma":[0.9969925,0.0005782014,0.0003555639,0.00008826495,0.0001815187,0.00002372711,0.0001072726,0.00001594745,0.001657018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9800903,"threshold_uncertainty_score":0.5134276,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168119569","doi":"10.3732/ajb.91.6.905","title":"Phylogenetic position and biogeography of <i>Hillebrandia sandwicensis</i> (Begoniaceae): a rare Hawaiian relict","year":2004,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"National Science Foundation","keywords":"Archipelago; Biology; Begonia; Phylogenetic tree; Lineage (genetic); Biogeography; Genus; Ancestor; Taxon; Evolutionary biology; Ecology; Paleontology; Geography; Genetics; Archaeology","retraction":null,"screen_n_in":null,"score":{"opus":0.003562431159545027,"gpt":0.1947411448093447,"spread":0.1911787136497997,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009420587,0.0001149791,0.0002358711,0.00009999205,0.00005698117,0.00001480909,0.0001066965,0.00004717381,0.000006550961],"category_scores_gemma":[0.00001868149,0.0001006167,0.0001531014,0.000197308,0.0002774369,0.000006390904,0.00002691245,0.00008894784,9.864432e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001148779,"about_ca_system_score_gemma":0.0000524137,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004549985,"about_ca_topic_score_gemma":0.00002175697,"domain_scores_codex":[0.9992676,0.00003754935,0.000285038,0.0001271207,0.0001287476,0.0001539058],"domain_scores_gemma":[0.9993137,0.000009429247,0.0003133815,0.0001290762,0.0001190912,0.0001153584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002602028,0.0000672052,0.01401792,0.000005487035,0.0001227045,0.00001723021,0.0000798289,0.00002698675,0.9815975,0.00004704003,0.0003405271,0.003417381],"study_design_scores_gemma":[0.00677068,0.01310896,0.5089337,0.00041078,0.0005656162,0.00488635,0.002249192,0.000009298957,0.4246417,0.000742532,0.03666412,0.001017087],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948348,0.003718284,0.0006377755,0.0003326753,0.00008212865,0.00005630739,0.00004757683,0.000002911631,0.0002875441],"genre_scores_gemma":[0.9949565,0.002381846,0.002226413,0.0002666676,0.0001373911,9.557771e-7,0.000009279534,0.00001131273,0.000009618931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5569558,"threshold_uncertainty_score":0.4103032,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2325408151","doi":"10.12705/623.1","title":"Molecular phylogeny of the <i>Campanula pyramidalis</i> species complex (Campanulaceae) inferred from chloroplast and nuclear non‐coding sequences and its taxonomic implications","year":2013,"lang":"en","type":"article","venue":"Taxon","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Celiac Association; University of Toronto","funders":"Science and Engineering Research Board; Natural Sciences and Engineering Research Council of Canada","keywords":"Polyphyly; Biology; Monophyly; Taxon; Campanulaceae; Internal transcribed spacer; Evolutionary biology; Phylogenetic tree; Zoology; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.01953263039952953,"gpt":0.2052163938415625,"spread":0.1856837634420329,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004016135,0.0001478237,0.0001606465,0.00002552004,0.0001565268,0.00006292362,0.0002006615,0.00009492075,0.00008088945],"category_scores_gemma":[0.00003798767,0.0001189868,0.00005789025,0.00006873651,0.0002146045,0.00001339407,0.0002103568,0.00007961965,0.00001156888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001255733,"about_ca_system_score_gemma":0.00001905277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001944071,"about_ca_topic_score_gemma":0.00009726575,"domain_scores_codex":[0.9992704,0.00003138455,0.0001875944,0.0002585099,0.0000742695,0.0001778245],"domain_scores_gemma":[0.9994726,0.00002025565,0.0001167162,0.0002638179,0.00005495609,0.00007160624],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000009410244,0.00001628747,0.004886498,0.00000878452,0.00003374464,2.48727e-7,0.00005904768,0.0000175774,0.9923535,0.000994415,0.001485873,0.0001345977],"study_design_scores_gemma":[0.0005592405,0.0001005253,0.66324,0.00003981245,0.00006678677,0.00002642292,0.0005215352,0.0008887136,0.2839285,0.0003227153,0.04993084,0.0003749517],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960132,0.0004511271,0.0001786195,0.0003190488,0.00006662688,0.0003324412,0.0003094657,0.00001063554,0.002318794],"genre_scores_gemma":[0.9987621,0.0004191703,0.0002614532,0.0002198988,0.00008409689,0.00002509302,0.00009570851,0.0000133179,0.0001191418],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.708425,"threshold_uncertainty_score":0.4852141,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2049840159","doi":"10.1016/j.ympev.2015.04.016","title":"A multilocus phylogenetic analysis reveals the monophyly of a recircumscribed papilionoid legume tribe Diocleae with well-supported generic relationships","year":2015,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Fundação de Amparo à Pesquisa do Estado da Bahia","keywords":"Polyphyly; Paraphyly; Biology; Monophyly; Phylogenetic tree; Clade; Systematics; Tribe; Phylogenetics; Molecular phylogenetics; Evolutionary biology; Botany; Taxonomy (biology); Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02131058684903605,"gpt":0.2111109320393289,"spread":0.1898003451902929,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004039735,0.0002571243,0.0003028292,0.0001776286,0.0001839907,0.00003856143,0.0002303987,0.0001957322,0.000006865098],"category_scores_gemma":[0.00009562638,0.0001994424,0.000163839,0.0008097275,0.000243181,0.000006218393,0.0001028672,0.0001541665,0.000005772544],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004098939,"about_ca_system_score_gemma":0.0001036665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006810942,"about_ca_topic_score_gemma":0.0001489984,"domain_scores_codex":[0.9982309,0.0002838452,0.0003996642,0.0004664637,0.0002976823,0.0003213932],"domain_scores_gemma":[0.9986652,0.00002109767,0.0002257338,0.0006059711,0.0002907121,0.0001912517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001888237,0.00009398831,0.07809439,0.00001218536,0.0005456294,0.000006736338,0.0001118666,0.006665391,0.9131679,0.0003385116,0.0004778073,0.0002967657],"study_design_scores_gemma":[0.003348348,0.002094068,0.7953248,0.00003772649,0.002944139,0.0001343784,0.0009584433,0.01286771,0.170265,0.00159375,0.009224192,0.001207493],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9636884,0.005638219,0.02945721,0.0001399847,0.00006603178,0.0003750167,0.00008174576,0.00001320289,0.0005401538],"genre_scores_gemma":[0.9969981,0.0002617126,0.001931161,0.00007378959,0.0000855564,0.00004658965,0.0002986164,0.00002837324,0.0002761462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7429029,"threshold_uncertainty_score":0.8133027,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050278676","doi":"10.3732/ajb.92.6.1017","title":"Evolution of <i>Cyrtandra</i> (Gesneriaceae) in the Pacific Ocean: the origin of a supertramp clade","year":2005,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Clade; Biology; Biological dispersal; Monophyly; Endemism; Range (aeronautics); Ecology; Phylogenetics; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.008046270350932085,"gpt":0.2213110597628946,"spread":0.2132647894119625,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003171171,0.00008253148,0.0001898804,0.00004068446,0.00003485259,0.000008685643,0.0002899386,0.00003501881,0.00001158335],"category_scores_gemma":[0.0000465988,0.00004722441,0.0001311438,0.0002234585,0.0002878542,0.00000799861,0.00001801898,0.0001489728,9.813091e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002805953,"about_ca_system_score_gemma":0.00008247788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003486839,"about_ca_topic_score_gemma":0.00006492096,"domain_scores_codex":[0.9991119,0.0001229913,0.0003648979,0.00007651097,0.0001858235,0.0001378811],"domain_scores_gemma":[0.9993381,0.00004209008,0.0003170295,0.0001859677,0.00008562156,0.00003118697],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002845131,0.0001505415,0.02148498,0.000003974245,0.00006100438,0.000004539711,0.0005832678,0.0001328563,0.9676046,0.0005002789,0.006271252,0.00291822],"study_design_scores_gemma":[0.002581256,0.005025165,0.1837586,0.0001858168,0.0002447296,0.001602266,0.03152623,0.0003060894,0.07883066,0.0003090015,0.6950538,0.0005764058],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955614,0.001877623,0.0003291377,0.001167558,0.00007592504,0.00006116978,0.00002339956,9.70515e-7,0.000902847],"genre_scores_gemma":[0.9985129,0.000740406,0.0003003698,0.0001239361,0.0002496369,7.446552e-7,0.000002052969,0.000005959451,0.00006405235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8887739,"threshold_uncertainty_score":0.1925755,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025894270","doi":"10.1046/j.1365-2699.2003.00828.x","title":"Plant collecting spread and densities: their potential impact on biogeographical studies in Thailand","year":2003,"lang":"en","type":"article","venue":"Journal of Biogeography","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Geography; Foothills; Quarter (Canadian coin); Distribution (mathematics); Ecology; Physical geography; Cartography; Archaeology; Mathematics; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.02262946816025325,"gpt":0.2660590839294887,"spread":0.2434296157692354,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003348881,0.0001606042,0.0002499517,0.0004353939,0.00009762258,0.00003460676,0.0000810308,0.0001094414,0.000006114807],"category_scores_gemma":[0.00006422332,0.0001067,0.0002577602,0.000303174,0.0001545607,0.000007374301,0.00002468155,0.0001701644,3.789796e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001155244,"about_ca_system_score_gemma":0.00003091562,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001504302,"about_ca_topic_score_gemma":0.00005014766,"domain_scores_codex":[0.9991349,0.00009356385,0.000281608,0.0001472096,0.0001263196,0.0002163753],"domain_scores_gemma":[0.9995357,0.0000451035,0.0001502312,0.0000933053,0.00008484899,0.00009079451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001070108,0.0002785853,0.6884541,0.00002485999,0.001036054,0.0002058501,0.0003781525,0.00006551758,0.3027034,0.0001885423,0.005304033,0.000290791],"study_design_scores_gemma":[0.009321564,0.0126368,0.7667944,0.0009142309,0.0004047177,0.00995206,0.0148359,0.00008264434,0.132018,0.003482558,0.04778267,0.001774434],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918031,0.007422556,0.0000226278,0.00005066399,0.0002681691,0.00006733401,0.0001130197,0.000002947287,0.0002496049],"genre_scores_gemma":[0.9944722,0.005142244,0.0001311914,0.00008336072,0.0001349648,0.000001435908,0.00001384651,0.000008036234,0.00001271397],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1706855,"threshold_uncertainty_score":0.4351101,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170867567","doi":"10.1139/g01-074","title":"Chloroplast DNA phylogeography of<i>Cunninghamia konishii</i>(Cupressaceae), an endemic conifer of Taiwan","year":2001,"lang":"en","type":"article","venue":"Genome","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"Taiwan Forestry Research Institute","keywords":"Cupressaceae; Cunninghamia; Phylogeography; Biology; Chloroplast DNA; Evolutionary biology; Chloroplast; Botany; Phylogenetics; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01234291744192177,"gpt":0.2180469885696178,"spread":0.205704071127696,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001061729,0.0001481436,0.0002036398,0.00007646898,0.00006179928,0.00001217174,0.0002668863,0.0001467493,0.0001158768],"category_scores_gemma":[0.00001398952,0.0001467243,0.000131555,0.0001534911,0.0001825495,0.000007235068,0.00008022032,0.00008896115,0.000008574746],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007140006,"about_ca_system_score_gemma":0.00003696816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003103291,"about_ca_topic_score_gemma":0.00005343466,"domain_scores_codex":[0.9990616,0.00003285522,0.0002565713,0.0002640537,0.0001273699,0.0002575562],"domain_scores_gemma":[0.9993286,0.000005622569,0.0001237118,0.0003617991,0.0000844695,0.00009576965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009679759,0.00008179022,0.02729187,0.00001250173,0.00006972452,0.000004105556,0.00007735962,0.00003724728,0.9717083,0.0001813524,0.0002231634,0.0002157642],"study_design_scores_gemma":[0.001335218,0.001156281,0.309932,0.00002612067,0.0001043588,0.0001279205,0.0004371237,0.0000263717,0.333674,0.0002047487,0.3523588,0.0006171332],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904985,0.001316791,0.0002998479,0.00002697355,0.0001465723,0.0001126288,0.0002666485,0.00001316737,0.00731889],"genre_scores_gemma":[0.9979051,0.0005014348,0.0002477749,0.00008195709,0.0001936509,0.000007831655,0.0003758123,0.00001739664,0.0006690668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6380344,"threshold_uncertainty_score":0.5983244,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2883708051","doi":"10.1111/ele.13132","title":"Testing Darwin's transoceanic dispersal hypothesis for the inland nettle family (Urticaceae)","year":2018,"lang":"en","type":"article","venue":"Ecology Letters","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Institute of Botany, Chinese Academy of Sciences; Key Laboratory for Plant Diversity and Biogeography of East Asia; Kunming Institute of Botany, Chinese Academy of Sciences; Royal Botanical Gardens, Kew; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; National Natural Science Foundation of China; Chinese Academy of Sciences","keywords":"Urticaceae; Biological dispersal; Biology; Ecology; Seed dispersal; Habitat; Population; Demography","retraction":null,"screen_n_in":null,"score":{"opus":0.02672793643646277,"gpt":0.221628684845388,"spread":0.1949007484089252,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001285225,0.0001116102,0.00009807337,0.00002009746,0.0002915239,0.00002336385,0.000215812,0.00009644232,0.00005053471],"category_scores_gemma":[0.0001671097,0.00008445916,0.00008043664,0.00006346433,0.0002733018,0.000003516459,0.00003488845,0.00007158885,0.00003138798],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001603176,"about_ca_system_score_gemma":0.00002453538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009718095,"about_ca_topic_score_gemma":0.0000758736,"domain_scores_codex":[0.9992645,0.00003593484,0.0001202465,0.0002302623,0.00004766164,0.0003014075],"domain_scores_gemma":[0.9994754,0.0002169806,0.00003636995,0.0001934942,0.00003661975,0.00004114804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007655489,0.00002658396,0.01309512,0.000003489633,0.0001190079,0.000002117975,0.00004959945,0.00006263419,0.9088609,0.0000345488,0.07671581,0.0009536334],"study_design_scores_gemma":[0.001833763,0.001154502,0.6334779,0.00001114786,0.0003360274,0.00006841528,0.0002676703,0.004856469,0.01986503,0.00004960509,0.3374639,0.0006156089],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828146,0.0001156166,0.009389536,0.00543271,0.0005536352,0.0002595992,0.00006530568,0.00002007803,0.001348929],"genre_scores_gemma":[0.9900082,0.00001622922,0.002228789,0.006413876,0.001026742,0.00003363279,0.00003135566,0.00001867929,0.0002224786],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8889959,"threshold_uncertainty_score":0.3444144,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2057175885","doi":"10.1111/ddi.12276","title":"The use of <scp>DNA</scp> barcoding as a tool for the conservation biogeography of subtropical forests in <scp>C</scp>hina","year":2014,"lang":"en","type":"article","venue":"Diversity and Distributions","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Ministry of Science and Technology of the People's Republic of China","keywords":"DNA barcoding; Biodiversity; Biology; Barcode; Subtropics; Phylogenetic tree; Ecology; Biogeography; Genus; Temperate rainforest; Taxonomic rank; Evolutionary biology; Taxon; Ecosystem; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02771495117644845,"gpt":0.2171453446058087,"spread":0.1894303934293603,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001417344,0.00007197915,0.00008992993,0.00002691845,0.0006949516,0.00002582103,0.0001379528,0.0000825172,6.81517e-7],"category_scores_gemma":[0.001278958,0.00005248258,0.0001006169,0.0001259057,0.0002628387,0.00001256251,0.0002334386,0.00005606777,5.359115e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007454333,"about_ca_system_score_gemma":0.00001729872,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001865835,"about_ca_topic_score_gemma":0.0005606173,"domain_scores_codex":[0.9994751,0.00003821044,0.000130482,0.0001236333,0.0000791573,0.000153441],"domain_scores_gemma":[0.9990359,0.0006097039,0.00007319615,0.0001466008,0.0001003206,0.00003426262],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000306133,0.0000958985,0.8939283,0.00002189891,0.00007870814,4.331405e-7,0.0001918363,0.00002218726,0.02766622,0.06362544,0.01409311,0.0002453252],"study_design_scores_gemma":[0.0005198241,0.0001571405,0.790895,0.0000131919,0.0000670773,0.000003014021,0.0005174234,0.000623696,0.008176588,0.001002208,0.1979959,0.00002894569],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890108,0.0002018572,0.009135708,0.0001754371,0.00005888967,0.000188099,0.001155188,0.000004333823,0.00006966571],"genre_scores_gemma":[0.9989354,0.0003471658,0.00008692249,0.0000530413,0.00002899078,0.000008789177,0.000453235,0.0000021304,0.00008431268],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1839028,"threshold_uncertainty_score":0.5345076,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1704956667","doi":"10.1139/b06-035","title":"Phylogeny of the genus<i>Lotus</i>(Leguminosae, Loteae): evidence from nrITS sequences and morphology","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Lotus; Biology; Paraphyly; Genus; Phylogenetic tree; Monophyly; Taxonomy (biology); Botany; Tribe; Zoology; Clade","retraction":null,"screen_n_in":null,"score":{"opus":0.01201714649254253,"gpt":0.1959381485181991,"spread":0.1839210020256566,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001123632,0.00008750585,0.0001373836,0.00004189594,0.00009063655,0.00002109811,0.0002627021,0.00009698887,0.00003720546],"category_scores_gemma":[0.00009060907,0.00006654174,0.00008021115,0.00007502156,0.0002552782,0.000008434416,0.00002287051,0.0001095468,0.000001401731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002444479,"about_ca_system_score_gemma":0.0004054332,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.009089105,"about_ca_topic_score_gemma":0.0582002,"domain_scores_codex":[0.9993312,0.00005223279,0.0002390183,0.0001125326,0.00008678985,0.0001781666],"domain_scores_gemma":[0.9993953,0.00002219502,0.0001741478,0.0001530385,0.0001052335,0.0001500489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000142565,0.000004998481,0.05944834,0.000002601978,0.00002604048,0.000039306,0.00003752705,0.00001719968,0.9331035,0.00006642995,0.006883654,0.0003561584],"study_design_scores_gemma":[0.0003912644,0.0002447352,0.7084391,0.0001396652,0.0000919091,0.0008274385,0.0001386336,0.00001452757,0.1781409,0.0005694587,0.1107744,0.0002279049],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850734,0.01346477,0.00007256108,0.000377523,0.0003303635,0.0000468163,0.0001800514,7.61028e-7,0.0004537496],"genre_scores_gemma":[0.9986608,0.0002791345,0.0002282744,0.0001843895,0.0003487317,6.382663e-7,0.000004108844,0.000006259068,0.0002876755],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7549626,"threshold_uncertainty_score":0.9975095,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2972790398","doi":"10.3390/ijms20184534","title":"Chloroplast Genomes and Comparative Analyses among Thirteen Taxa within Myrsinaceae s.str. Clade (Myrsinoideae, Primulaceae)","year":2019,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Guangdong Science and Technology Department; National Natural Science Foundation of China; Egg Farmers of Canada","keywords":"Biology; Clade; Monophyly; Phylogenetic tree; Genome; Nucleotide diversity; Genetics; Evolutionary biology; Gene; Haplotype; Genotype","retraction":null,"screen_n_in":null,"score":{"opus":0.03927663677523618,"gpt":0.3092330586164557,"spread":0.2699564218412195,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002258825,0.0001349464,0.0001915098,0.0001718808,0.00008165711,0.000152592,0.0005077884,0.00006976932,0.00004063922],"category_scores_gemma":[0.00004247364,0.0001074078,0.0001102639,0.0001279505,0.0003374346,0.00004543406,0.0001237455,0.0001372832,0.000009077095],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002831551,"about_ca_system_score_gemma":0.0001219732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001963995,"about_ca_topic_score_gemma":0.00003157594,"domain_scores_codex":[0.9987222,0.00006389102,0.0003239574,0.0002269105,0.0005048983,0.000158127],"domain_scores_gemma":[0.9991375,0.00002446315,0.0003544998,0.00009634453,0.0002923675,0.00009488823],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001208455,0.00005437089,0.04472044,0.000003772499,0.0002508761,0.00004991938,0.0002735161,0.002724032,0.9499934,0.001125839,0.0003698221,0.0003131858],"study_design_scores_gemma":[0.002810289,0.002461776,0.1571038,0.0002379577,0.0001691158,0.001859724,0.004829821,0.003843011,0.7923089,0.0008012285,0.03264568,0.0009286219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927927,0.002099887,0.0007811066,0.0003165888,0.0005678388,0.00008120594,0.00001927428,0.000003639101,0.003337737],"genre_scores_gemma":[0.9972979,0.0002600483,0.00167583,0.0001660375,0.0001524493,9.360854e-7,0.00001289448,0.00000490499,0.0004289567],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1576844,"threshold_uncertainty_score":0.4379964,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2037464892","doi":"10.1007/s11103-012-9884-3","title":"Plastid genome evolution in mycoheterotrophic Ericaceae","year":2012,"lang":"en","type":"article","venue":"Plant Molecular Biology","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Nortel (Canada)","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto","keywords":"Biology; Ericaceae; Plastid; Botany; Phylogenetic tree; Orchidaceae; Chloroplast DNA; Evolutionary biology; Gene; Chloroplast; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.009488136301647835,"gpt":0.2258171904854051,"spread":0.2163290541837573,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001341519,0.0001779405,0.0001713943,0.0001156395,0.00005058444,0.000008898481,0.0001794156,0.0002372005,0.00003935404],"category_scores_gemma":[0.00005390615,0.0001701985,0.00007875494,0.0001239626,0.00007649454,0.000005575131,0.0001123935,0.0001384899,0.00009463847],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004664965,"about_ca_system_score_gemma":0.00002730292,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003032929,"about_ca_topic_score_gemma":0.00002787863,"domain_scores_codex":[0.9987908,0.0001107258,0.0002066361,0.0002854127,0.00006422654,0.0005422042],"domain_scores_gemma":[0.9995609,0.00001103239,0.00005812177,0.0002312709,0.00001966341,0.0001190249],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007325609,0.00007746454,0.02727402,0.000004511571,0.00002806278,0.000008988814,0.00001679936,0.00003363795,0.9697806,0.00247474,0.0001907603,0.00003718531],"study_design_scores_gemma":[0.002434114,0.001198124,0.5065435,0.00003568969,0.00007935621,0.001017343,0.000103141,0.0001875506,0.1163964,0.0006854234,0.3696585,0.001660855],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821672,0.003002409,0.0115537,0.00006559775,0.0003628669,0.0001747218,0.0002485187,0.00002128567,0.002403624],"genre_scores_gemma":[0.9972306,0.0001493755,0.0005845417,0.0002026576,0.0002610453,0.00003626246,0.001419128,0.00001704828,0.00009930038],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8533842,"threshold_uncertainty_score":0.6940495,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131549213","doi":"10.3732/ajb.90.12.1696","title":"Meristem fate and bulbil formation in <i>Titanotrichum</i> (Gesneriaceae)","year":2003,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Bract; Primordium; Biology; Meristem; Inflorescence; Botany; Phyllotaxis; Gesneriaceae; Shoot; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.006760627204599159,"gpt":0.2081716566290976,"spread":0.2014110294244984,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001802989,0.00007701774,0.0001538177,0.00005340048,0.00003218431,0.00001948536,0.00006627799,0.0000290753,0.000007823453],"category_scores_gemma":[0.00006296739,0.00006756568,0.00004665054,0.0001377584,0.00007722024,0.00001232965,0.00001284731,0.00008492739,0.000001960092],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002148499,"about_ca_system_score_gemma":0.00002510556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006195929,"about_ca_topic_score_gemma":0.00002330382,"domain_scores_codex":[0.9993796,0.00006924094,0.0002520047,0.00007924586,0.00008836199,0.0001315039],"domain_scores_gemma":[0.9995792,0.00001112933,0.0002094402,0.00007809934,0.0000547485,0.00006741902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009384816,0.00003756816,0.006463944,0.000003830699,0.00002434789,0.00002340571,0.0001001518,0.00001291709,0.9858032,0.0002347719,0.001234462,0.005967501],"study_design_scores_gemma":[0.00395158,0.00464732,0.04524045,0.0001459967,0.0001242128,0.006261147,0.007674501,0.0001147696,0.2216113,0.0003492644,0.7088676,0.001011891],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949615,0.001401707,0.001398942,0.0001105397,0.0000998248,0.00003775767,0.000006054332,0.000001797315,0.001981848],"genre_scores_gemma":[0.997197,0.001233475,0.001228479,0.0001579112,0.00005992322,0.000001136421,0.000001944872,0.000006673399,0.0001134723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.764192,"threshold_uncertainty_score":0.2755249,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3203221818","doi":"10.1111/tpj.15533","title":"The red flower wintersweet genome provides insights into the evolution of magnoliids and the molecular mechanism for tepal color development","year":2021,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Tepal; Biology; Evolutionary biology; Genome; Lineage (genetic); Petunia; Phylogenetics; Gene duplication; Phylogenetic tree; Synteny; Comparative genomics; Genomics; Genetics; Gene; Botany; Stamen","retraction":null,"screen_n_in":null,"score":{"opus":0.008241569230259139,"gpt":0.194326822383047,"spread":0.1860852531527878,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004434655,0.0001007029,0.0001017671,0.000011517,0.0007701309,0.00008438303,0.0002922854,0.0000546345,0.000004317269],"category_scores_gemma":[0.0001011631,0.00004022961,0.00008589112,0.00004910311,0.0002142053,0.000004612554,0.0001264924,0.0001426618,8.463359e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004110847,"about_ca_system_score_gemma":0.0001446414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000010902,"about_ca_topic_score_gemma":0.0004010842,"domain_scores_codex":[0.9992207,0.0001398665,0.0002210476,0.000111668,0.0001407206,0.00016599],"domain_scores_gemma":[0.9994554,0.00008816692,0.0001133943,0.0001805847,0.0001279535,0.00003448271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006242176,0.00002506596,0.00002149365,0.000008197318,0.0002566365,0.00001043325,0.001432033,0.00002878796,0.970791,0.02536995,0.001080608,0.0003515096],"study_design_scores_gemma":[0.004080726,0.0005032983,0.002407047,0.0001132811,0.0003889763,0.003148441,0.01063244,0.002315307,0.4969622,0.02923476,0.4497325,0.0004810645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9791748,0.007088977,0.008171345,0.004473003,0.0003383679,0.000371901,0.00003221204,0.000003828593,0.000345581],"genre_scores_gemma":[0.9973931,0.001246761,0.0004242484,0.0002345848,0.0001880335,0.00003399172,0.00003640594,0.000008031684,0.0004348551],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4738289,"threshold_uncertainty_score":0.5923302,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109152167","doi":"10.2307/2656902","title":"Comparative pollen morphology and ultrastructure of the Callitrichaceae","year":2000,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Truman State University; National Science Foundation","keywords":"Biology; Ultrastructure; Pollen; Morphology (biology); Botany; Evolutionary biology; Zoology","retraction":null,"screen_n_in":null,"score":{"opus":0.006517528121820572,"gpt":0.2210470217226911,"spread":0.2145294936008706,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005332444,0.0000641972,0.0001799578,0.00001691454,0.00003755601,0.0000045835,0.0001313981,0.00002790815,0.00007175062],"category_scores_gemma":[0.00001221872,0.00004091621,0.00006861355,0.0000928793,0.0003428244,0.000002533857,0.00001651425,0.00009826881,7.797292e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005940717,"about_ca_system_score_gemma":0.00003171519,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001591307,"about_ca_topic_score_gemma":0.00001084388,"domain_scores_codex":[0.999544,0.00005817386,0.0001679548,0.00006644429,0.00007381153,0.00008958811],"domain_scores_gemma":[0.9996217,0.00001316197,0.0001738426,0.00009256942,0.00005224273,0.00004642944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000221392,0.00002917192,0.01578294,0.000001348826,0.0001057201,0.000004308097,0.000234342,0.00003998956,0.9758183,0.00004535419,0.002204081,0.005513009],"study_design_scores_gemma":[0.0009985788,0.002075827,0.8568713,0.00003071853,0.0001125918,0.002495265,0.001684716,0.00002285004,0.07315094,0.000158898,0.06215617,0.0002421391],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978377,0.0008717433,0.00005914949,0.000217828,0.00005402595,0.00003085671,0.00003232399,7.227529e-7,0.0008956873],"genre_scores_gemma":[0.9985292,0.0004962833,0.0004322013,0.0001456546,0.00009113379,2.876795e-7,9.903514e-7,0.000003475473,0.0003007871],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9026674,"threshold_uncertainty_score":0.1668515,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2143846075","doi":"10.3732/ajb.91.3.490","title":"Intergeneric and infrafamilial phylogeny of subfamily Monsteroideae (Araceae) revealed by chloroplast <i>&lt;011&gt;trn</i>L‐F sequences","year":2004,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"Cambridge Commonwealth Trust","keywords":"Biology; Araceae; Subfamily; Paraphyly; Botany; Phylogenetic tree; Clade; Sister group; Genus; Phylogenetics; Zoology; Taxon; Evolutionary biology; Systematics; Taxonomy (biology); Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.004187289440170275,"gpt":0.1977829079209489,"spread":0.1935956184807786,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001712856,0.0001759184,0.0003609489,0.00007017949,0.00005868447,0.00001975866,0.0002335581,0.00006489386,0.00001078457],"category_scores_gemma":[0.00005751278,0.0001533738,0.0001340613,0.0001855223,0.0004951303,0.0000155358,0.00006672204,0.0001458782,0.000002186762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003603901,"about_ca_system_score_gemma":0.000111163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006463934,"about_ca_topic_score_gemma":0.00006349901,"domain_scores_codex":[0.998843,0.00005988193,0.0004911977,0.0001868432,0.0001924167,0.0002266643],"domain_scores_gemma":[0.998984,0.00001768958,0.0005291914,0.000162955,0.0001519278,0.0001542301],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002334201,0.00006468888,0.01058125,0.000005836888,0.0001008783,0.00001587789,0.00009468964,0.00002846613,0.9839821,0.0000192489,0.00210214,0.00277139],"study_design_scores_gemma":[0.00592341,0.01479764,0.2270852,0.0004274529,0.0004072401,0.003721405,0.003712806,0.0000426295,0.6304806,0.0003431949,0.1114532,0.001605326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946098,0.00368602,0.00086164,0.0001391822,0.0002264882,0.00006280186,0.00009085582,0.000003979822,0.0003192211],"genre_scores_gemma":[0.9941571,0.003787512,0.001399856,0.0002794332,0.0002064112,0.000001859484,0.000008854073,0.00001576868,0.0001432499],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3535015,"threshold_uncertainty_score":0.6254402,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2576376018","doi":"10.3389/fpls.2017.00009","title":"Evolution and Expression Patterns of TCP Genes in Asparagales","year":2017,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Cheng Kung University; Universität Regensburg; Universidad de Antioquia; Academia Sinica; Universidad Nacional de Colombia; University of Alberta","keywords":"Biology; Petal; Sepal; Orchidaceae; Perianth; Gene duplication; Gene; Botany; Genetics; Stamen","retraction":null,"screen_n_in":null,"score":{"opus":0.01292531869865484,"gpt":0.2298662036711593,"spread":0.2169408849725045,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001705013,0.00004961345,0.00007360839,0.0000866389,0.0001094504,0.00002545952,0.0002567496,0.00004324065,0.000001248403],"category_scores_gemma":[0.00005472175,0.00004451396,0.00001050201,0.00003625988,0.000229178,0.00001772244,0.0001132445,0.0000372385,2.692842e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001528309,"about_ca_system_score_gemma":0.00003203929,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007887195,"about_ca_topic_score_gemma":0.0002101535,"domain_scores_codex":[0.9994865,0.00001045008,0.00009216177,0.0001831234,0.00009337449,0.0001343867],"domain_scores_gemma":[0.9997125,0.000002363281,0.00005975844,0.0001818999,0.00001274305,0.00003074587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001561126,0.000008836735,0.5525841,0.000003698938,4.634481e-7,0.000002025719,0.00001989538,0.00001081401,0.4466071,0.00004914043,0.0003549935,0.0003432736],"study_design_scores_gemma":[0.0001947431,0.0000305617,0.862103,0.00005360246,0.000001187063,0.000008652456,0.0001329929,0.000682201,0.1353427,0.00009403155,0.001280939,0.00007543996],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958781,0.0006692583,0.00250163,0.00001974896,0.0003286934,0.00005314113,0.00007727369,0.000001489115,0.0004706641],"genre_scores_gemma":[0.9982089,0.0004696359,0.001179376,0.000006200563,0.00002513943,0.000003120725,0.00001524785,0.000001658141,0.00009067926],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3112645,"threshold_uncertainty_score":0.1815227,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4205876747","doi":"10.1111/nph.17949","title":"Genomes shed light on the evolution of <i>Begonia</i>, a mega‐diverse genus","year":2022,"lang":"en","type":"article","venue":"New Phytologist","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Institute of Botany, Chinese Academy of Sciences; Kunming Institute of Botany, Chinese Academy of Sciences; Universiteit Gent; Chinese Academy of Sciences; European Commission; Chinese Academy of Agricultural Sciences; China Agricultural University; Sun Yat-sen University; National Natural Science Foundation of China; South China Agricultural University; Government of Jiangxi Province; New York Botanical Garden","keywords":"Synteny; Adaptation (eye); Genome; Lineage (genetic); Introgression; Gene duplication; Phylogenetics; Genome evolution; Genomics","retraction":null,"screen_n_in":null,"score":{"opus":0.01753221882062991,"gpt":0.2195685717557246,"spread":0.2020363529350947,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009670461,0.00009523022,0.000102419,0.00003052051,0.0002327741,0.000008938138,0.0002797571,0.00004883459,0.0003078365],"category_scores_gemma":[0.00003382318,0.00007280159,0.00009693157,0.0001216073,0.00007862929,0.000001946286,0.0001692651,0.0001198428,0.00001705298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006298842,"about_ca_system_score_gemma":0.00009063402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001344961,"about_ca_topic_score_gemma":0.0001116213,"domain_scores_codex":[0.9993106,0.00006819158,0.0001240071,0.0001992404,0.0001359514,0.0001620521],"domain_scores_gemma":[0.9995511,0.00001399732,0.00007993504,0.0002935028,0.00002361241,0.00003784225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002691494,0.0001267529,0.004424307,0.000005115504,0.00007126079,0.00000867833,0.00009294083,0.0002592097,0.7906402,0.009899205,0.1925988,0.001604304],"study_design_scores_gemma":[0.0004220178,0.0005397289,0.004466591,0.00000284723,0.00002829794,0.00003077197,0.0005900011,0.00004312253,0.04933674,0.0003554725,0.9440206,0.0001638423],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9470282,0.005110487,0.000459943,0.003080853,0.0007398125,0.0003427718,0.0003490398,0.00003157668,0.04285732],"genre_scores_gemma":[0.9957122,0.00008477361,0.00006930691,0.0003067221,0.0001921014,0.00002370931,0.00006229868,0.000007290321,0.00354164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7514217,"threshold_uncertainty_score":0.3370593,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3155185614","doi":"10.3389/fpls.2021.642598","title":"Discordant Phylogenomic Placement of Hydnoraceae and Lactoridaceae Within Piperales Using Data From All Three Genomes","year":2021,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Technische Universität Dresden; Erasmus+; Deutscher Akademischer Austauschdienst; European Commission","keywords":"Phylogenetic tree; Biology; Phylogenomics; Monophyly; Phylogenetics; Evolutionary biology; Taxon; Genus; Genome; Taxonomic rank; Zoology; Clade; Genetics; Ecology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.0470436604659762,"gpt":0.2606689361679368,"spread":0.2136252757019607,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002348182,0.0001113033,0.0001627041,0.00006423364,0.00009344499,0.00004644114,0.0004633625,0.0000395476,0.000006825365],"category_scores_gemma":[0.00004720392,0.0001023885,0.00001765902,0.0001446008,0.0003298964,0.00002390668,0.0004982592,0.00007235364,6.168123e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003762797,"about_ca_system_score_gemma":0.0002035415,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001132639,"about_ca_topic_score_gemma":0.0009504143,"domain_scores_codex":[0.9989234,0.00002330773,0.0001981386,0.0004888244,0.0001436565,0.0002226566],"domain_scores_gemma":[0.9993663,0.00001025648,0.00008254874,0.0004458912,0.00002494131,0.00007004754],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000812991,0.00003169669,0.1239521,0.000006229049,0.00002333404,0.00001715619,0.0001042056,0.0001993921,0.874638,0.00004732285,0.00082632,0.000072922],"study_design_scores_gemma":[0.002250913,0.0004163759,0.1101909,0.0002428471,0.0001734847,0.0002544054,0.004876003,0.1053258,0.7453331,0.001385706,0.02814254,0.001407951],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884676,0.004830014,0.004047393,0.00002997717,0.000637646,0.00008359266,0.001812633,0.000003298654,0.00008788813],"genre_scores_gemma":[0.9731936,0.000887186,0.02491997,0.00005004466,0.00007537671,0.00000162467,0.0008096073,0.00000656448,0.00005599907],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.129305,"threshold_uncertainty_score":0.417528,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1991865644","doi":"10.1080/00173130802184214","title":"Comparative pollen morphology in the early‐divergent angiosperm family Hydatellaceae reveals variation at the infraspecific level","year":2008,"lang":"en","type":"article","venue":"Grana","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Department of Environment and Conservation","funders":"","keywords":"Biology; Pollen; Botany; Aperture (computer memory); Palynology","retraction":null,"screen_n_in":null,"score":{"opus":0.0798734883810842,"gpt":0.251335850446559,"spread":0.1714623620654748,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001755035,0.0001227648,0.0001348491,0.00003414286,0.0003145398,0.0000139612,0.0002775986,0.00009964462,0.00008664843],"category_scores_gemma":[0.00001450889,0.00007725984,0.00008067513,0.0001555212,0.0001504185,0.000004579524,0.00008698618,0.0001130644,0.0001326595],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003402453,"about_ca_system_score_gemma":0.00002292145,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000236586,"about_ca_topic_score_gemma":0.0004102398,"domain_scores_codex":[0.9990925,0.0001556669,0.0001799844,0.0002217853,0.0001350532,0.0002150545],"domain_scores_gemma":[0.9995309,0.0000297377,0.00006104261,0.0003114312,0.00003609065,0.00003087259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001452872,0.00009040377,0.02581922,0.000002212294,0.00006921481,0.00002954807,0.003286464,0.00007600016,0.8016789,0.0006448941,0.1680827,0.00007508836],"study_design_scores_gemma":[0.0004219347,0.0000969453,0.93708,0.000002755649,0.00001449337,0.00007466124,0.0003422286,0.00001648188,0.00327396,0.0001130134,0.05842613,0.0001374259],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898145,0.001306231,0.000167045,0.0004629024,0.0001763492,0.0002579333,0.0002036798,0.000006253451,0.007605106],"genre_scores_gemma":[0.9950504,0.0007242764,0.00005523413,0.0006126555,0.0001506355,0.00002092806,0.0002842756,0.000006541288,0.003095067],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9112607,"threshold_uncertainty_score":0.3150565,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1545164838","doi":"10.1002/ece3.213","title":"The impact of Pleistocene climate change on an ancient arctic–alpine plant: multiple lineages of disparate history in <i>Oxyria digyna</i>","year":2012,"lang":"en","type":"article","venue":"Ecology and Evolution","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal British Columbia Museum; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Beringia; Glacial period; Pleistocene; Arctic; Phylogeography; Last Glacial Maximum; Lineage (genetic); Stadial; Ecology; Biology; Paleontology; Geography; Phylogenetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02240100109540503,"gpt":0.2428195962887389,"spread":0.2204185951933339,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002356912,0.00007985286,0.0001145821,0.0000386311,0.0000664949,0.000001603738,0.00005959594,0.0001045552,0.00000854229],"category_scores_gemma":[0.00005634828,0.00005800608,0.00004082329,0.00003552365,0.0001261089,0.00001111178,0.00003454244,0.00006564483,0.000002049284],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008857781,"about_ca_system_score_gemma":0.00001992333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001932582,"about_ca_topic_score_gemma":0.001609982,"domain_scores_codex":[0.9994048,0.00006783871,0.0001517307,0.0001101342,0.00003650125,0.0002290199],"domain_scores_gemma":[0.9996741,0.00003114919,0.00009667328,0.00012362,0.00002539474,0.00004903767],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007136221,0.0002927272,0.7925672,0.0000159141,0.00002193575,5.01538e-7,0.0001756918,0.00006139333,0.2040169,0.0008222615,0.001152503,0.0001593095],"study_design_scores_gemma":[0.000363371,0.0006947636,0.9946089,0.000008996367,0.000008374166,0.000006901791,0.00003476949,0.0005304196,0.001715672,0.00001111648,0.001952406,0.00006434564],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956925,0.003488383,0.00001183272,0.00002374505,0.0002851464,0.0001328082,0.0001442182,0.000003101617,0.0002182629],"genre_scores_gemma":[0.9986768,0.0009061781,0.00001792814,0.00003008333,0.0001379734,0.00002028998,0.0001728524,0.000004583645,0.00003335266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2023012,"threshold_uncertainty_score":0.2365419,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2319496810","doi":"10.12705/631.1","title":"Phylogeny of the restiid clade (Poales) and implications for the classification of Anarthriaceae, Centrolepidaceae and Australian Restionaceae","year":2014,"lang":"en","type":"article","venue":"Taxon","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Department of Environment and Conservation","funders":"","keywords":"Synapomorphy; Clade; Monophyly; Biology; Subfamily; Sister group; Evolutionary biology; Zoology; Botany; Phylogenetics; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02473191477867332,"gpt":0.2470862268452191,"spread":0.2223543120665458,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001137533,0.000060222,0.0000732371,0.00001341856,0.0001173135,0.000007530958,0.0001069061,0.00006668864,0.000001754057],"category_scores_gemma":[0.000123512,0.0000387122,0.00003793502,0.00004965968,0.0001870282,0.000002569768,0.0000370142,0.00003941658,2.444854e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003757192,"about_ca_system_score_gemma":0.0000146723,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001219768,"about_ca_topic_score_gemma":0.0001571175,"domain_scores_codex":[0.9995731,0.00003848076,0.0001337657,0.0001275952,0.00004125542,0.00008580698],"domain_scores_gemma":[0.9994961,0.00005610128,0.0001109319,0.0002553957,0.00005554301,0.00002594749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003874271,0.00001635786,0.02215816,0.00001245495,0.0000171901,3.848229e-9,0.00001427008,0.00001780247,0.9595694,0.01247029,0.003384568,0.002300741],"study_design_scores_gemma":[0.000243612,0.00006974525,0.8488299,0.000009445771,0.00003154069,0.000003479273,0.00003915514,0.00013955,0.01341554,0.0004526178,0.1367187,0.00004676243],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917358,0.0007601965,0.002497717,0.003681257,0.00007338063,0.000397432,0.0002353471,0.00000411125,0.0006147401],"genre_scores_gemma":[0.9986974,0.0004309271,0.0003156778,0.00004687046,0.00008278654,0.00003014568,0.00004799246,0.000004713004,0.0003435013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9461539,"threshold_uncertainty_score":0.1578638,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2798213617","doi":"10.3897/mycokeys.33.24704","title":"The Northeast Chinese species of Psathyrella (Agaricales, Psathyrellaceae)","year":2018,"lang":"en","type":"article","venue":"MycoKeys","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ministry of Education and Child Care","funders":"","keywords":"Internal transcribed spacer; Phylogenetic tree; Agaricales; Biology; China; Zoology; Line drawings; Key (lock); Identification key; Taxonomy (biology); Botany; Ecology; Geography; Archaeology; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.008386697023573038,"gpt":0.2196444466271129,"spread":0.2112577496035399,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001355979,0.0001304436,0.0001191729,0.00002232531,0.0002467457,0.00002767768,0.0002929326,0.00009042882,0.0001057297],"category_scores_gemma":[0.00009397329,0.00008371037,0.0001068568,0.000130481,0.000347762,0.000002329959,0.0001225615,0.00007514204,0.0001412383],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009483631,"about_ca_system_score_gemma":0.00003241715,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002278869,"about_ca_topic_score_gemma":0.0002170793,"domain_scores_codex":[0.999191,0.0000383421,0.0001977539,0.0001976668,0.0001420578,0.00023321],"domain_scores_gemma":[0.9993315,0.00002928048,0.00007256717,0.000393226,0.0001105954,0.00006284031],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001486621,0.0000786204,0.06362724,0.000006999813,0.00007075175,0.000002459737,0.0001126398,0.000002320767,0.8838135,0.002688065,0.04846116,0.0009875806],"study_design_scores_gemma":[0.0003315942,0.0003658203,0.08749625,0.000008339291,0.00001897027,0.0000218508,0.0001227081,0.00006346752,0.04335716,0.000303517,0.8676977,0.0002126694],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9155473,0.001398515,0.0003790787,0.0002882882,0.000431556,0.0001152153,0.00005417335,0.00001454644,0.08177137],"genre_scores_gemma":[0.9807666,0.0006795402,0.0001997718,0.00009392409,0.0008734487,0.000005514838,0.00005466166,0.0000134303,0.01731311],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8404563,"threshold_uncertainty_score":0.341361,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2903436430","doi":"10.3390/ijms19123780","title":"Intergeneric Relationships within the Early-Diverging Angiosperm Family Nymphaeaceae Based on Chloroplast Phylogenomics","year":2018,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Natural Science Foundation of China; Egg Farmers of Canada","keywords":"Biology; Monophyly; NdhF; Genome; Evolutionary biology; Phylogenetic tree; Phylogenomics; Synteny; Botany; Chloroplast DNA; Genetics; Gene; Clade","retraction":null,"screen_n_in":null,"score":{"opus":0.02534686576926715,"gpt":0.2486138403500746,"spread":0.2232669745808075,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005617168,0.00009944177,0.00007629857,0.000130396,0.000224804,0.0001157271,0.0007766404,0.00005076062,0.00001594556],"category_scores_gemma":[0.0001534877,0.00006872359,0.000124449,0.0001527922,0.0003595127,0.00001562847,0.00008129578,0.0001304961,0.00001620671],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003584223,"about_ca_system_score_gemma":0.0001311928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000778851,"about_ca_topic_score_gemma":0.00001849299,"domain_scores_codex":[0.9989331,0.00008171629,0.0002544208,0.0001589002,0.0004455183,0.0001263597],"domain_scores_gemma":[0.9992503,0.00002851453,0.0002414379,0.0001190387,0.0003059451,0.00005477899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001906996,0.00007355869,0.01229503,8.54945e-7,0.0001184929,0.00005053356,0.0002376848,0.009757826,0.9723297,0.002872407,0.001258353,0.0008148283],"study_design_scores_gemma":[0.002900401,0.005034837,0.1411176,0.0002674332,0.0001451926,0.001159435,0.001804763,0.02828208,0.7655128,0.002133938,0.0505629,0.001078545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9863843,0.0002902377,0.008255307,0.0005833536,0.001469148,0.00004363372,0.00001531859,0.000003628694,0.002955062],"genre_scores_gemma":[0.9970739,0.00003365258,0.001415519,0.0008204905,0.0005673163,0.000001334732,0.000006791449,0.000006828107,0.00007414671],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2068169,"threshold_uncertainty_score":0.2802466,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4386459836","doi":"10.1002/ppp3.10425","title":"Small and in‐country herbaria are vital for accurate plant threat assessments: A case study from Peru","year":2023,"lang":"en","type":"article","venue":"Plants People Planet","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"National Geographic Society","keywords":"Herbarium; IUCN Red List; Geography; Conservation status; Biodiversity; Endangered species; Critically endangered; Ecology; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.04195736001093182,"gpt":0.2757338994439777,"spread":0.2337765394330459,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000125426,0.0002020927,0.0002385752,0.00007246664,0.0001288959,0.00008062409,0.0001282518,0.0001399942,0.00002347724],"category_scores_gemma":[0.00002635287,0.0001878152,0.00002267581,0.00008255177,0.00001834729,0.000009395725,0.0001079002,0.0001093714,0.00001869911],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001462662,"about_ca_system_score_gemma":0.00003209184,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002694934,"about_ca_topic_score_gemma":0.08933587,"domain_scores_codex":[0.9988908,0.00004039237,0.00020862,0.0004252537,0.00009872869,0.0003362428],"domain_scores_gemma":[0.9995138,0.0001108529,0.0000710945,0.0001985323,0.00001281892,0.00009288234],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001194242,0.0004354492,0.9235741,0.00006051802,0.0003155744,0.004791876,0.0009802601,0.00009902838,0.04348896,0.00001073771,0.02474187,0.0003073761],"study_design_scores_gemma":[0.006866538,0.001191174,0.9138592,0.00008575403,0.0001896328,0.004194106,0.02947652,0.004213156,0.0008438702,0.00007118101,0.03773785,0.001270968],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9740273,0.0002421649,0.00002530157,0.00002496273,0.0002574195,0.0004987653,0.02476789,0.00003529225,0.0001208362],"genre_scores_gemma":[0.977466,0.0002619288,0.00007170758,0.00007408357,0.000190926,0.00009478345,0.02164158,0.00001936926,0.0001795731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08664094,"threshold_uncertainty_score":0.9272814,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2079737779","doi":"10.1086/676675","title":"Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data","year":2014,"lang":"en","type":"article","venue":"International Journal of Plant Sciences","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"University of Florida; National Science Foundation","keywords":"Sensu; Biology; Clade; Phylogenetic tree; Eudicots; Taxon; Evolutionary biology; Botany; Genetics; Gene; Taxonomy (biology); Genus","retraction":null,"screen_n_in":null,"score":{"opus":0.3778544420096163,"gpt":0.3735242091769931,"spread":0.004330232832623238,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001579235,0.0001270779,0.0001342693,0.0001221094,0.000200459,0.0002848991,0.003571738,0.00006228931,0.00003266796],"category_scores_gemma":[0.0006508049,0.000104581,0.00003146419,0.0001107507,0.0002047364,0.0002080543,0.000709033,0.0001400093,0.000002926116],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003128741,"about_ca_system_score_gemma":0.0003175592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004151678,"about_ca_topic_score_gemma":0.000132457,"domain_scores_codex":[0.998247,0.00009572135,0.0003559412,0.0004703354,0.0006222762,0.0002086796],"domain_scores_gemma":[0.9986299,0.00007330116,0.000381543,0.0006692173,0.000166956,0.00007910297],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00004333289,0.00004183784,0.006020975,0.000003130217,0.00005403988,0.00003628928,0.00001577255,0.001227409,0.9854056,0.0003659009,0.005652312,0.001133431],"study_design_scores_gemma":[0.0005078552,0.0001781002,0.0003589217,0.0001159489,0.00004049755,0.001208991,0.0001400266,0.9239575,0.01088217,0.00003243246,0.06233545,0.0002421532],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.902136,0.0004823723,0.06222567,0.000890849,0.003412494,0.0001308884,0.03014174,0.00001247492,0.0005675803],"genre_scores_gemma":[0.9735458,0.0001311264,0.01616546,0.0005759226,0.001541044,3.137163e-7,0.008020339,0.000005905567,0.00001409731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9745234,"threshold_uncertainty_score":0.6637237,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2044302133","doi":"10.1111/j.1529-8817.2008.00554.x","title":"PHYLOGENETIC RELATIONSHIPS AMONG LINEAGES OF THE CERAMIACEAE (CERAMIALES, RHODOPHYTA) BASED ON NUCLEAR SMALL SUBUNIT rDNA SEQUENCE DATA<sup>1</sup>","year":2008,"lang":"en","type":"article","venue":"Journal of Phycology","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of New Brunswick","funders":"","keywords":"Ceramiales; Biology; Rhodomelaceae; Sensu; Monophyly; Subfamily; Phylogenetic tree; Molecular phylogenetics; Tribe; Botany; Paraphyly; Genus; Taxonomy (biology); Clade; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.1001442829807167,"gpt":0.2481512091021453,"spread":0.1480069261214287,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003511572,0.0001522251,0.000252401,0.00009863224,0.0002339184,0.00001139943,0.0007521338,0.0002319783,0.00009875323],"category_scores_gemma":[0.0003927754,0.0001163236,0.000153133,0.0001656369,0.0003990995,0.00001042818,0.0001473462,0.0004654062,0.00000614397],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003413474,"about_ca_system_score_gemma":0.0001918086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001622461,"about_ca_topic_score_gemma":0.0000528861,"domain_scores_codex":[0.9986119,0.0003460415,0.0004398006,0.0002110827,0.000180208,0.0002109303],"domain_scores_gemma":[0.9986148,0.0001206828,0.0004256139,0.000567425,0.0001848471,0.00008664598],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007503667,0.0006337658,0.2617169,0.00005060854,0.0002854397,0.000119155,0.0002769482,0.04485963,0.6687694,0.0003115615,0.02114395,0.001082336],"study_design_scores_gemma":[0.002478602,0.00240402,0.8150258,0.0001268731,0.0002469899,0.000852206,0.0002487664,0.01595566,0.02123043,0.0001227942,0.1407813,0.0005265951],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972249,0.0003228954,0.0002569562,0.0003491769,0.000231377,0.0001299094,0.0001468745,0.000004941989,0.001333027],"genre_scores_gemma":[0.9972898,0.0003390821,0.001262826,0.0002944354,0.0004594009,0.000001454728,0.00005858392,0.00002069579,0.0002736637],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.647539,"threshold_uncertainty_score":0.4743539,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2032618944","doi":"10.1139/g10-077","title":"Nuclear DNA content in Sinningia (Gesneriaceae); intraspecific genome size variation and genome characterization in S. speciosa","year":2010,"lang":"en","type":"article","venue":"Genome","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"Cooperative State Research, Education, and Extension Service","keywords":"Genome size; Biology; Gesneriaceae; Genome; Nuclear DNA; GC-content; Botany; Ploidy; Genetics; Evolutionary biology; Gene; Mitochondrial DNA","retraction":null,"screen_n_in":null,"score":{"opus":0.01085797628932962,"gpt":0.1835488874625852,"spread":0.1726909111732556,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002058396,0.0001752717,0.0001900781,0.0001104677,0.00006875122,0.00007590141,0.0001571231,0.0002141146,0.000300346],"category_scores_gemma":[0.00005899205,0.0001898596,0.000038804,0.0001494752,0.00006638725,0.00001559279,0.00009911988,0.0002211524,0.00004566296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004900982,"about_ca_system_score_gemma":0.00002755308,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003024918,"about_ca_topic_score_gemma":0.0001977212,"domain_scores_codex":[0.9988513,0.00004004848,0.0003111207,0.0003962599,0.00009754897,0.0003037376],"domain_scores_gemma":[0.9995199,0.00001140258,0.00009175174,0.0002474769,0.00004092211,0.00008857825],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006587026,0.00006201953,0.001626863,0.000008098151,0.00001218254,0.00001092939,0.0005355398,0.000006780913,0.9971192,0.0004579084,0.000003167015,0.00009144352],"study_design_scores_gemma":[0.000556714,0.00008010873,0.9390582,0.000004247544,0.000006307315,0.00002596738,0.0000901119,0.00001883452,0.001815437,0.0000350971,0.05807764,0.0002313057],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978628,0.0001284867,0.00009949921,0.0002824685,0.0002802206,0.0002809701,0.0001674285,0.00001645556,0.0008816539],"genre_scores_gemma":[0.9971438,0.0004597529,0.0003461842,0.0002194789,0.0004663916,0.00001420245,0.0007790334,0.0000276976,0.0005434717],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9953038,"threshold_uncertainty_score":0.7742248,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091887176","doi":"10.1139/x07-218","title":"Demographic history and interspecific hybridization of four<i>Shorea</i>species (Dipterocarpaceae) from Peninsular Malaysia inferred from nucleotide polymorphism in nuclear gene regions","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Forest Research","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Dipterocarpaceae; Biology; Interspecific competition; Gene flow; Population; Botany; Ecology; Genetic variation; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.05202244424716559,"gpt":0.2298930346353925,"spread":0.1778705903882269,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002559927,0.0001324655,0.0002436778,0.0006660145,0.0001416653,0.00002938682,0.0003442892,0.0001398548,0.000151661],"category_scores_gemma":[0.0001890732,0.0001368807,0.000109834,0.0002308017,0.0006458483,0.00002712864,0.00005396551,0.000380013,0.000004023525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000215494,"about_ca_system_score_gemma":0.0006102867,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01398744,"about_ca_topic_score_gemma":0.06776199,"domain_scores_codex":[0.9986321,0.0001465169,0.0003804545,0.0002237258,0.000268515,0.0003486936],"domain_scores_gemma":[0.9988312,0.00004499807,0.0001377902,0.0002634977,0.0002937719,0.0004287],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002065623,0.00004377135,0.5658722,0.000006243328,0.0001167399,0.0006442829,0.001045554,0.00006226986,0.4000158,0.00064599,0.03122786,0.0001127203],"study_design_scores_gemma":[0.0009412768,0.0003516361,0.9086784,0.0001143967,0.00002424369,0.0003062436,0.0005907848,0.0001117173,0.003503261,0.0005146528,0.08464619,0.0002171849],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908083,0.007518918,0.0001024355,0.0003282496,0.0001708858,0.0001045706,0.0001692592,0.000002196214,0.0007951686],"genre_scores_gemma":[0.9963151,0.002632824,0.0003732117,0.00004452335,0.0002506017,0.000001827289,0.0001256203,0.00002432941,0.000231945],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3965126,"threshold_uncertainty_score":0.9925785,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1997851081","doi":"10.1111/nph.12133","title":"An approach to identify putative hybrids in the ‘coalescent stochasticity zone’, as exemplified in the <scp>A</scp>frican plant genus <i><scp>S</scp>treptocarpus</i> (<scp>G</scp>esneriaceae)","year":2013,"lang":"en","type":"article","venue":"New Phytologist","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Science Foundation, United Arab Emirates; Claude Leon Foundation; National Research Foundation; Leverhulme Trust; Scottish Government; Rural and Environment Science and Analytical Services Division; McMaster University","keywords":"Coalescent theory; Introgression; Biology; Evolutionary biology; Polyphyly; Lineage (genetic); Phylogenetic tree; Population; Genetics; Gene; Clade","retraction":null,"screen_n_in":null,"score":{"opus":0.02616832618347636,"gpt":0.2690933898923196,"spread":0.2429250637088433,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006948812,0.000608899,0.0005736699,0.000178387,0.0003270791,0.000385308,0.001630652,0.000377956,0.000005673725],"category_scores_gemma":[0.001194365,0.0004344939,0.0002243337,0.0006621938,0.0004029181,0.00004672294,0.0002907282,0.0007362349,0.000162457],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001040918,"about_ca_system_score_gemma":0.0002010717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002058547,"about_ca_topic_score_gemma":0.001038167,"domain_scores_codex":[0.9958988,0.0006057027,0.0006609288,0.001110251,0.0005692263,0.001155087],"domain_scores_gemma":[0.997601,0.0006222689,0.0002816392,0.00104283,0.0001191212,0.0003331118],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006107788,0.002531049,0.02466956,0.00009511864,0.0002452232,0.0002178575,0.01599824,0.002640755,0.3891011,0.003510495,0.5595505,0.001379023],"study_design_scores_gemma":[0.004279922,0.002528629,0.4114599,0.0001284685,0.0002604233,0.001058534,0.08939649,0.001612215,0.05485157,0.001792664,0.4320545,0.0005766836],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9648883,0.0007068222,0.009265958,0.0002867216,0.0003881144,0.001900867,0.0004740159,0.0000604212,0.02202877],"genre_scores_gemma":[0.9929011,0.0001484143,0.0006420703,0.002352625,0.0006193884,0.00053446,0.001174835,0.00004994068,0.001577145],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3867903,"threshold_uncertainty_score":0.9998107,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3194819585","doi":"10.1007/s00035-021-00267-6","title":"Incongruences between nuclear and plastid phylogenies challenge the identification of correlates of diversification in Gentiana in the European Alpine System","year":2021,"lang":"en","type":"article","venue":"Alpine Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Deutsche Forschungsgemeinschaft","keywords":"Gentiana; Diversification (marketing strategy); Phylogenetic tree; Evolutionary biology; Biology; Biodiversity; Ecology; Taxon; Geography","retraction":null,"screen_n_in":null,"score":{"opus":0.01280670656271875,"gpt":0.2054668592633444,"spread":0.1926601527006257,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003293208,0.00005795536,0.00008921186,0.00002633247,0.00004470439,0.00001209599,0.0001571461,0.0000358161,0.000003018817],"category_scores_gemma":[0.00004735855,0.00004112588,0.00002713772,0.0001184729,0.00009104308,0.000005792977,0.00006549123,0.00005386836,0.000002203006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006376742,"about_ca_system_score_gemma":0.00000979843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004644569,"about_ca_topic_score_gemma":0.0002500549,"domain_scores_codex":[0.99931,0.0001589342,0.0002499761,0.0001325003,0.00007757042,0.00007107611],"domain_scores_gemma":[0.9996261,0.00002642529,0.0001189893,0.000172902,0.00004498982,0.00001057581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001791762,0.00005508845,0.06907827,0.00004880105,0.00004753613,0.000005349502,0.0008465456,0.00001790168,0.9275863,0.001126959,0.0002327962,0.0009365933],"study_design_scores_gemma":[0.0002561254,0.00006001045,0.9826285,0.00004612328,0.00003269025,0.00001101872,0.004161765,0.0001424288,0.0108412,0.00002174894,0.001728995,0.00006945175],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963381,0.002050545,0.00003031526,0.0002862163,0.00004691922,0.00009343396,0.00005744356,0.000002426655,0.001094655],"genre_scores_gemma":[0.9989528,0.0008737153,0.00001680583,0.000008618821,0.0000478424,0.000002501595,0.00005575677,0.000004579431,0.0000373855],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9167451,"threshold_uncertainty_score":0.1677065,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1982935737","doi":"10.1111/jpy.12149","title":"The monospecific genus <i><scp>M</scp>eredithia</i> (<scp>K</scp>allymeniaceae, <scp>G</scp>igartinales) is species rich and geographically widespread with species from temperate <scp>A</scp>tlantic, <scp>P</scp>acific, and <scp>I</scp>ndian <scp>O</scp>ceans","year":2013,"lang":"en","type":"article","venue":"Journal of Phycology","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of New Brunswick","funders":"New Brunswick Innovation Foundation; Natural Sciences and Engineering Research Council of Canada; Dana Foundation","keywords":"Biology; Phylogenetic tree; Genus; Sensu; Protein subunit; Botany; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.008918389987618522,"gpt":0.1937654880116706,"spread":0.1848470980240521,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow","sts","scholarly_communication","research_integrity"],"consensus_categories":["metaepi_narrow","sts","research_integrity"],"category_scores_codex":[0.002116191,0.00317385,0.003672577,0.001401385,0.002717439,0.002530192,0.003504026,0.00287494,0.00009875707],"category_scores_gemma":[0.01008903,0.002628007,0.001510111,0.002029982,0.003920992,0.0005798645,0.001446041,0.004188841,0.0004272566],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003432105,"about_ca_system_score_gemma":0.0009689707,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002669741,"about_ca_topic_score_gemma":0.00106819,"domain_scores_codex":[0.9839074,0.00139417,0.003991574,0.003369754,0.002434032,0.004903054],"domain_scores_gemma":[0.9753328,0.01320835,0.003873098,0.002342535,0.002385473,0.002857724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005367425,0.0009609148,0.07359866,0.0002094856,0.002664278,0.0006690783,0.006633153,0.0001260048,0.383492,0.000640048,0.5306728,0.0002798457],"study_design_scores_gemma":[0.004832197,0.003684389,0.1209725,0.0003261185,0.001290418,0.00221692,0.03413091,0.000205321,0.07400715,0.001006231,0.7570235,0.0003043701],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.939869,0.02458691,0.0006446301,0.0007599686,0.002974423,0.002205145,0.001986402,0.0002530272,0.02672046],"genre_scores_gemma":[0.8627442,0.05561836,0.002895818,0.003694197,0.009401357,0.0003862857,0.001117001,0.0007749502,0.06336785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3094849,"threshold_uncertainty_score":0.9987898,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4389153209","doi":"10.1007/s12225-023-10124-w","title":"Afrothismiaceae (Dioscoreales), a new fully mycoheterotrophic family endemic to tropical Africa","year":2023,"lang":"en","type":"article","venue":"Kew Bulletin","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Bract; Botany; Genus; Orchidaceae; Taxonomy (biology); Inflorescence","retraction":null,"screen_n_in":null,"score":{"opus":0.02529204930473144,"gpt":0.2290492615293206,"spread":0.2037572122245891,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007682905,0.0002046796,0.0001892882,0.00009354941,0.0001123068,0.0000450089,0.0003196397,0.0001943894,0.0003520019],"category_scores_gemma":[0.0001038917,0.0001981136,0.000140463,0.0002164332,0.00004482739,0.00000120812,0.000207205,0.000164008,0.003791723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002958583,"about_ca_system_score_gemma":0.00007169951,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005571467,"about_ca_topic_score_gemma":0.00003334161,"domain_scores_codex":[0.9985847,0.00005115024,0.0002218838,0.0004554055,0.0001900221,0.0004967839],"domain_scores_gemma":[0.9992341,0.00001773429,0.00003846564,0.0003728537,0.00003573268,0.000301159],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008421739,0.00001741351,0.0003408913,0.000004978484,0.00002085094,0.00001941201,0.00005021878,0.00002718084,0.3863859,0.0001887412,0.6123078,0.0005522748],"study_design_scores_gemma":[0.0003963442,0.0002760162,0.01452965,0.00001844245,0.00001515666,0.0000219579,0.00004210349,0.00001349381,0.001775837,0.0001064598,0.9825586,0.0002459419],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9534391,0.0009653758,0.002679186,0.009211547,0.0006773269,0.0005796291,0.0002111647,0.0002559272,0.03198075],"genre_scores_gemma":[0.9270567,0.0004204979,0.001676653,0.001976667,0.001238742,0.00008816276,0.0002851034,0.00005759071,0.06719993],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3846101,"threshold_uncertainty_score":0.9969839,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2006291167","doi":"10.1139/g09-056","title":"Genome size variation in<i>Begonia</i>","year":2009,"lang":"en","type":"article","venue":"Genome","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"Instituut voor Landbouw-, Visserij- en Voedingsonderzoek, Vlaamse Overheid; Vlaamse regering","keywords":"Biology; Begonia; Genetics; Genome size; Genome; Chromosome; Genus; Hybrid; Evolutionary biology; Gene; Botany","retraction":null,"screen_n_in":null,"score":{"opus":0.007558655771342018,"gpt":0.2010061417280194,"spread":0.1934474859566774,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000080577,0.00008810378,0.00008303657,0.00003100346,0.00004500695,0.00002050278,0.0001249548,0.00009069352,0.00008440592],"category_scores_gemma":[0.00002608337,0.00009126251,0.00004314911,0.00009737379,0.00001352983,0.000003699085,0.00002522653,0.0000626027,0.0000783131],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002522751,"about_ca_system_score_gemma":0.00002370495,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007779249,"about_ca_topic_score_gemma":0.00002614266,"domain_scores_codex":[0.9993863,0.00001762358,0.0001309301,0.0001989715,0.00006451984,0.0002016543],"domain_scores_gemma":[0.9997136,0.000004665284,0.00003058962,0.0001817836,0.00002094814,0.00004839059],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002313649,0.00003659368,0.0001765314,0.000001319478,0.000006017565,0.000004320856,0.00006338591,0.00006182211,0.9992377,0.00023151,0.00005061206,0.000107033],"study_design_scores_gemma":[0.0003493452,0.0001641854,0.8554209,0.000001865364,0.000006461556,0.00001611546,0.00001633528,0.000006261024,0.002945179,0.0004621876,0.140433,0.0001781607],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9814267,0.0008142336,0.0005847239,0.000356505,0.0001094007,0.0001268881,0.00004487789,0.00001672091,0.01652],"genre_scores_gemma":[0.9963127,0.0002125048,0.0004543884,0.0006797368,0.0003052016,0.00000529735,0.0001334492,0.000006536505,0.001890155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9962925,"threshold_uncertainty_score":0.3721577,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1930719466","doi":"10.1111/j.1095-8312.2004.00283.x","title":"Assembly of tropical plant diversity on a local scale: Cyrtandra (Gesneriaceae) on Mount Kerinci, Sumatra","year":2004,"lang":"en","type":"article","venue":"Biological Journal of the Linnean Society","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Eye Institute; Biotechnology and Biological Sciences Research Council","keywords":"Biology; Ecology; Lineage (genetic); Species diversity; Alpha diversity; Genetic algorithm; Rainforest; Endemism; Gamma diversity","retraction":null,"screen_n_in":null,"score":{"opus":0.02484626825811434,"gpt":0.2214039771995646,"spread":0.1965577089414503,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001965555,0.0001504919,0.0002508431,0.00001187351,0.0002013865,0.0000134601,0.0004512755,0.0002630166,0.00001330692],"category_scores_gemma":[0.00006255486,0.00008257422,0.0005783466,0.0000741291,0.0002999034,0.000004284956,0.0002679778,0.0003287344,0.000004112519],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001222897,"about_ca_system_score_gemma":0.00005432956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008122569,"about_ca_topic_score_gemma":0.00001376803,"domain_scores_codex":[0.9989936,0.00008117697,0.0003052058,0.0001652834,0.000247709,0.0002069632],"domain_scores_gemma":[0.999362,0.00003626909,0.0002359685,0.0001856789,0.00008181409,0.00009828967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002634308,0.00125765,0.04423534,0.00002447627,0.0004714425,0.00003075348,0.0004102504,0.001689233,0.9334978,0.005290451,0.009855821,0.0006024095],"study_design_scores_gemma":[0.00593136,0.01048339,0.5896397,0.0003353709,0.0001817953,0.0004822748,0.001674296,0.00009300138,0.332168,0.00123947,0.05697288,0.0007984577],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973056,0.0001508047,0.001139301,0.000626481,0.0003247733,0.00007964244,0.0001414081,0.000005318557,0.0002267268],"genre_scores_gemma":[0.9980666,0.0004673977,0.0003880542,0.0006364025,0.0003805721,6.300942e-7,0.00001524139,0.000005496852,0.00003962542],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6013299,"threshold_uncertainty_score":0.3367279,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2164436531","doi":"10.1080/09670262.2011.565129","title":"A new taxonomic interpretation of the type of<i>Plocamium cartilagineum</i>(Plocamiales, Florideophyceae) and its consequences","year":2011,"lang":"en","type":"article","venue":"European Journal of Phycology","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of New Brunswick","funders":"","keywords":"Biology; Synonym (taxonomy); Thallus; Taxonomy (biology); Type (biology); Botany; Type specimen; Evolutionary biology; Ecology; Genus","retraction":null,"screen_n_in":null,"score":{"opus":0.0315457161500203,"gpt":0.2163822073140386,"spread":0.1848364911640183,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000188239,0.00007004561,0.0001423004,0.00004080962,0.00002195734,0.000003292172,0.0002033719,0.00002867524,0.00004599022],"category_scores_gemma":[0.0000870888,0.00005067894,0.00006698351,0.00005748572,0.0001396148,0.000006729518,0.0000679588,0.0000870115,0.000002952402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005932304,"about_ca_system_score_gemma":0.0001116431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007978319,"about_ca_topic_score_gemma":0.00001989996,"domain_scores_codex":[0.9993113,0.0001819878,0.0002983132,0.00007768343,0.00004985874,0.00008081922],"domain_scores_gemma":[0.9993873,0.00001314868,0.000330875,0.00009323345,0.0001299318,0.00004552423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003345942,0.00002427874,0.002477572,0.00001101751,0.00006278102,0.000006958903,0.0002777411,0.00002050423,0.9933175,0.0003459837,0.002215715,0.0009053223],"study_design_scores_gemma":[0.001638997,0.00571623,0.1395934,0.0001389498,0.0002481929,0.0007150807,0.000457014,0.00008871607,0.8115456,0.0002690053,0.03930565,0.0002831775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910645,0.001595725,0.0006767691,0.00005664891,0.0006614328,0.00005878589,0.000009641186,0.000001507127,0.005875001],"genre_scores_gemma":[0.9988426,0.0002713685,0.0004465354,0.00004737062,0.0001563442,1.781834e-7,0.000001653434,0.000007361872,0.0002266106],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.181772,"threshold_uncertainty_score":0.2066627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2153927309","doi":"10.1093/aobpla/plu050","title":"DNA barcodes successfully identified Macaronesian <i>Lotus</i> (Leguminosae) species within early diverged lineages of Cape Verde and mainland Africa","year":2014,"lang":"en","type":"article","venue":"AoB Plants","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"University of British Columbia; U.S. Department of Agriculture","keywords":"Cape verde; Biology; DNA barcoding; Internal transcribed spacer; Intergenic region; Locus (genetics); Phylogenetic tree; rpoB; Botany; Evolutionary biology; Genetics; Gene; Genome","retraction":null,"screen_n_in":null,"score":{"opus":0.01089258520168187,"gpt":0.1945594882950513,"spread":0.1836669030933695,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001694392,0.000182764,0.0002307843,0.00005917505,0.0001256661,0.00005426742,0.0002204805,0.0001428137,0.00003126435],"category_scores_gemma":[0.00006109273,0.0001653527,0.00005791889,0.00005886873,0.0001513754,0.00001301955,0.0001305857,0.00009265648,0.0000154729],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005990149,"about_ca_system_score_gemma":0.0000210497,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000976771,"about_ca_topic_score_gemma":0.000296265,"domain_scores_codex":[0.9989251,0.00006989352,0.0002501439,0.000313045,0.0001748374,0.0002669998],"domain_scores_gemma":[0.9994504,0.00003755608,0.000114634,0.0002430125,0.00004514227,0.000109264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001653218,0.00004107178,0.06541651,0.00003567065,0.00007208747,0.00000976162,0.0003339082,0.000005035527,0.9271039,0.0003255633,0.006292612,0.0001985154],"study_design_scores_gemma":[0.001251949,0.0003519339,0.4109156,0.00007070076,0.00008127222,0.00005521984,0.0003653213,0.00009288796,0.529599,0.0001696774,0.05654785,0.0004986305],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927338,0.0004326103,0.0001913876,0.00005421459,0.0002431433,0.0001131578,0.0004284357,0.00001641961,0.005786794],"genre_scores_gemma":[0.9953215,0.0003054255,0.0001925127,0.00005719837,0.0002220322,0.000005995691,0.0002550084,0.00001546905,0.003624906],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.397505,"threshold_uncertainty_score":0.6742889,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2939906019","doi":"10.1002/tax.12026","title":"Cryptic species in an ancient flowering‐plant lineage (Hydatellaceae, Nymphaeales) revealed by molecular and micromorphological data","year":2019,"lang":"en","type":"article","venue":"Taxon","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Lomonosov Moscow State University; Russian Foundation for Basic Research; European Commission","keywords":"Biology; Endemism; Lineage (genetic); Herbarium; Genus; Ecology; Species complex; Allopatric speciation; Range (aeronautics); Biodiversity; Phylogenetic tree; Zoology; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.02451130459332965,"gpt":0.2359178439286338,"spread":0.2114065393353041,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001795508,0.0001541638,0.0001764466,0.00003718406,0.00003501929,0.00004448057,0.0003348804,0.0001390913,0.0001329211],"category_scores_gemma":[0.00002808595,0.0001407485,0.00002477773,0.00007249518,0.00007012953,0.0000115135,0.000304589,0.0001054153,0.00004917291],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000170458,"about_ca_system_score_gemma":0.00001858092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002123159,"about_ca_topic_score_gemma":0.00008862084,"domain_scores_codex":[0.9988812,0.0000522708,0.0001863687,0.0005073686,0.0001013164,0.0002714444],"domain_scores_gemma":[0.9992412,0.000009240281,0.00004759733,0.0005849913,0.00001852243,0.00009841736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009288735,0.00008531457,0.01378982,0.00001318634,0.000009364284,0.00004699223,0.00001024466,0.00001494285,0.976,0.00003219601,0.00983031,0.00007470742],"study_design_scores_gemma":[0.001866484,0.000990568,0.04417569,0.00005748503,0.00003436762,0.000221113,0.0001597309,0.00182465,0.3256336,0.000009971089,0.6242505,0.0007758944],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956686,0.001820636,0.0002211261,0.00005187985,0.0001228581,0.0002364157,0.0007268984,0.00001408026,0.00113749],"genre_scores_gemma":[0.9935668,0.0005718842,0.0006680907,0.0002898883,0.00006941901,0.000006331981,0.003765176,0.00001298816,0.001049381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6503664,"threshold_uncertainty_score":0.5739556,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W79952518","doi":"10.1023/a:1023911114431","title":"Lacquer-based agroforestry system in western Yunnan, China","year":2003,"lang":"en","type":"article","venue":"Agroforestry Systems","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Royal British Columbia Museum","funders":"Natural Science Foundation of Yunnan Province; National Natural Science Foundation of China; National Science Foundation","keywords":"Lacquer; Agroforestry; Agriculture; Cash crop; Geography; Agricultural science; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.01007344862734042,"gpt":0.2109419449869542,"spread":0.2008684963596138,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003228778,0.0003020075,0.0003158521,0.0001071796,0.0001208732,0.00008593166,0.0002937631,0.0003653896,0.00001340302],"category_scores_gemma":[0.00005316996,0.0002775439,0.0001305108,0.0002188795,0.000073166,0.00001170209,0.00004415322,0.0002025733,0.00009717882],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009344813,"about_ca_system_score_gemma":0.0001366408,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003074594,"about_ca_topic_score_gemma":0.0003348671,"domain_scores_codex":[0.9980533,0.0001869315,0.0004708729,0.0004833727,0.0002380416,0.00056747],"domain_scores_gemma":[0.9990702,0.0000182688,0.0001465296,0.0005508523,0.00004633111,0.0001678034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001700179,0.0003028679,0.8683692,0.0006655147,0.0001197902,0.0003605332,0.00009863816,0.0038876,0.1011,0.0146058,0.01017327,0.0001467516],"study_design_scores_gemma":[0.005266416,0.000862084,0.5175033,0.00123184,0.00009536072,0.001484443,0.002067044,0.003255173,0.03078525,0.00005825909,0.4350695,0.002321392],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9785944,0.001232969,0.001050542,0.00003006224,0.001087738,0.0004422698,0.00008281397,0.00006483876,0.0174144],"genre_scores_gemma":[0.9956666,0.00002887226,0.00007409908,0.00005263344,0.0003224401,0.00009844519,0.0002708236,0.00003932861,0.003446756],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4248962,"threshold_uncertainty_score":0.9999677,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159941644","doi":"10.1139/cjb-2012-0292","title":"Five new <i>Telamonia</i> species (<i>Cortinarius</i>, Agaricales) from western North America","year":2013,"lang":"en","type":"article","venue":"Botany","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Biology; Agaricales; Subgenus; Botany; Taxonomy (biology); Old World; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.01018683907460931,"gpt":0.1967580401031664,"spread":0.1865712010285571,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00001443977,0.0001950671,0.0001844326,0.00002115623,0.00009802082,0.00008820049,0.0002792933,0.0001124836,0.0005262184],"category_scores_gemma":[0.00003543638,0.0001789502,0.000113596,0.000103251,0.00008831469,0.00001113659,0.0001510655,0.0001240453,0.0009844485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000187032,"about_ca_system_score_gemma":0.0000481326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008592771,"about_ca_topic_score_gemma":0.0009478838,"domain_scores_codex":[0.998921,0.00002533226,0.0002226885,0.0003650485,0.0001466822,0.0003191982],"domain_scores_gemma":[0.9992521,0.0000169799,0.00009065054,0.0003838482,0.00005248469,0.0002038712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003741166,0.00007934777,0.07790247,0.000002202159,0.00007267141,0.00001345141,0.000134086,0.00001121426,0.6040104,0.00001775065,0.3135088,0.004210219],"study_design_scores_gemma":[0.0002624817,0.000115625,0.3145173,0.000006203295,0.00002269538,0.00001038105,0.00009455778,0.00002310054,0.002766443,0.00007005708,0.6818536,0.0002576193],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884987,0.001009787,0.001782094,0.0005895662,0.0002338677,0.0001957568,0.0002162318,0.00004108848,0.007432949],"genre_scores_gemma":[0.9326044,0.0006208852,0.001542035,0.001963662,0.001175942,0.00002993098,0.0003231309,0.00003287136,0.06170711],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6012439,"threshold_uncertainty_score":0.9997934,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2213698274","doi":"10.26786/1920-7603(2011)16","title":"Pollination and reproductive biology of thirteen species of &lt;i&gt;Begonia&lt;/i&gt; in the Serra do Mar State Park, São Paulo, Brazil","year":2011,"lang":"en","type":"article","venue":"Journal of Pollination Ecology","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Biology; Begonia; Halictidae; Pollen; Pollinator; Botany; Stamen; Pollination; Anthesis; Nectar; Ovule; Apoidea; Hymenoptera; Cultivar","retraction":null,"screen_n_in":null,"score":{"opus":0.01816433756565679,"gpt":0.2409972900480004,"spread":0.2228329524823436,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001032982,0.0001281836,0.0003039539,0.0002511306,0.00005398947,0.00000762375,0.0002438437,0.0001828783,0.00007924233],"category_scores_gemma":[0.0003442422,0.00009777139,0.00009392807,0.0001840039,0.0002414982,0.00002569016,0.00005898442,0.0001554577,0.000001681225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003208785,"about_ca_system_score_gemma":0.00008945165,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006729641,"about_ca_topic_score_gemma":0.0005037375,"domain_scores_codex":[0.9985371,0.0003055417,0.0006462953,0.0001968484,0.0001296875,0.000184586],"domain_scores_gemma":[0.9985169,0.00007577758,0.000784813,0.0001933069,0.0003908215,0.0000384073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004801174,0.0003973257,0.03622776,0.0000262171,0.0001567968,0.0000119157,0.00312185,0.00003445473,0.9460561,0.009165707,0.002082769,0.002238953],"study_design_scores_gemma":[0.001444905,0.002201683,0.8938031,0.00002171239,0.00008005044,0.0002067564,0.0009785305,0.00005137569,0.07750698,0.006419365,0.01709112,0.0001943787],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947136,0.001218509,0.0005852456,0.0006286167,0.0003017155,0.0001690467,0.00008563472,0.000002109711,0.002295505],"genre_scores_gemma":[0.9966719,0.001919063,0.0005517981,0.00008214296,0.0001754617,0.00000425992,0.0000309246,0.000008504401,0.0005559291],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8685492,"threshold_uncertainty_score":0.3987001,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}