{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":1545,"total_is_capped":false,"direct_labels_cover":2,"predictions_cover":1545,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"e2bcbaf491d4","filters":{"topic":"Plant tissue culture and regeneration"}},"results":[{"id":"W2098115340","doi":"10.1126/science.1086391","title":"Genome-Wide Insertional Mutagenesis of <i>Arabidopsis thaliana</i>","year":2003,"lang":"en","type":"article","venue":"Science","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5093,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute","funders":"","keywords":"Insertional mutagenesis; Arabidopsis thaliana; Genetics; Biology; Arabidopsis; Gene; Genome; Mutagenesis; Saturated mutagenesis; DNA; Mutation; Mutant","authors":[{"name":"José M. Alonso","is_ca":true},{"name":"Anna N. Stepanova","is_ca":true},{"name":"Thomas J. Leisse","is_ca":true},{"name":"Christopher J. Kim","is_ca":true},{"name":"Huaming Chen","is_ca":true},{"name":"Paul Shinn","is_ca":true},{"name":"Denise K. Stevenson","is_ca":true},{"name":"Justin Zimmerman","is_ca":true},{"name":"Pascual Barajas","is_ca":true},{"name":"Rosa Cheuk","is_ca":true},{"name":"Carmelita Gadrinab","is_ca":true},{"name":"Collen Heller","is_ca":true},{"name":"Albert Jeske","is_ca":true},{"name":"Eric Koesema","is_ca":true},{"name":"Cristina C. Meyers","is_ca":true},{"name":"Holly Parker","is_ca":true},{"name":"Lance Prednis","is_ca":true},{"name":"Yasser Ansari","is_ca":true},{"name":"Nathan Choy","is_ca":true},{"name":"Hashim Deen","is_ca":true},{"name":"M. Geralt","is_ca":true},{"name":"Nisha Hazari","is_ca":true},{"name":"Emily Hom","is_ca":true},{"name":"Meagan Karnes","is_ca":true},{"name":"Celene B. Mulholland","is_ca":true},{"name":"Ral Ndubaku","is_ca":true},{"name":"Ian Schmidt","is_ca":true},{"name":"Plinio Guzmán","is_ca":true},{"name":"Laura Aguilar‐Henonin","is_ca":true},{"name":"Markus Schmid","is_ca":true},{"name":"Detlef Weigel","is_ca":true},{"name":"David E. Carter","is_ca":true},{"name":"Trudy Marchand","is_ca":true},{"name":"Eddy Risseeuw","is_ca":true},{"name":"Debra Brogden","is_ca":true},{"name":"Albana Zeko","is_ca":true},{"name":"William L. Crosby","is_ca":true},{"name":"Charles C. Berry","is_ca":true},{"name":"Joseph R. Ecker","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01077888421380396,"gpt":0.2306431974397148,"spread":0.2198643132259109,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000186672,0.00005120636,0.00004971583,0.00002775787,0.00009295662,0.00000987792,0.0001392086,0.00003595866,0.00002195836],"category_scores_gemma":[0.0001034653,0.00004139732,0.00002695524,0.0001750124,0.000186827,0.000005141088,0.00001938675,0.00001695067,0.000009161314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007302699,"about_ca_system_score_gemma":0.0001960902,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001080566,"about_ca_topic_score_gemma":0.00004734108,"domain_scores_codex":[0.9994637,0.00001620879,0.00008541835,0.0001808735,0.0001389005,0.0001148435],"domain_scores_gemma":[0.9996939,0.000003100058,0.00003661263,0.000139439,0.00008243734,0.00004454327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000002706211,0.0000139135,0.004978331,0.000002571034,0.000003412418,5.434991e-7,0.00002319179,0.00009004206,0.9943566,0.0001786241,0.0002357182,0.0001143727],"study_design_scores_gemma":[0.00006106122,0.00003163389,0.01635654,0.000001820425,0.000003412414,0.00001136881,0.00001923078,0.000003257295,0.9109277,0.00002852674,0.07249741,0.00005811247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946004,0.001127981,0.0006264471,0.00007362816,0.0001047213,0.00004553511,0.000007429139,0.000003177764,0.003410707],"genre_scores_gemma":[0.9974363,0.00007065629,0.000686328,0.0001369535,0.00003564348,0.000003185085,0.00001884717,0.000002761319,0.0016093],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08342894,"threshold_uncertainty_score":0.1688134,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2092672870","doi":"10.1146/annurev.arplant.59.032607.092730","title":"Alkaloid Biosynthesis: Metabolism and Trafficking","year":2008,"lang":"en","type":"review","venue":"Annual Review of Plant Biology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":683,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Biosynthesis; Alkaloid; Biochemistry; Enzyme; Metabolic engineering; Biology; Metabolism; Gene; Secondary metabolism; Chemistry; Botany","authors":[{"name":"Jörg Ziegler","is_ca":true},{"name":"Peter J. Facchini","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02081438409256708,"gpt":0.2933261637739602,"spread":0.2725117796813931,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001960419,0.0003891823,0.001665656,0.00007254109,0.00006056684,0.000003991256,0.0002546089,0.0005447677,0.000009759367],"category_scores_gemma":[0.0001801035,0.000252043,0.0003585586,0.00009500635,0.0001482079,0.000003398962,0.00009796485,0.0001494658,0.0000116781],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005834748,"about_ca_system_score_gemma":0.0002071763,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003094071,"about_ca_topic_score_gemma":0.00003485574,"domain_scores_codex":[0.998282,0.0002890927,0.000639356,0.0004884953,0.00007053902,0.0002305606],"domain_scores_gemma":[0.9990414,0.00005144724,0.0004564334,0.0003033264,0.00007350907,0.00007391151],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000005806887,0.00003087719,6.160924e-7,0.02921179,0.0003478087,0.00001088948,0.00002205636,2.834026e-8,0.001032049,0.0001676451,0.03159016,0.9375803],"study_design_scores_gemma":[0.00005933106,0.00008416206,5.03246e-7,0.01773317,0.0004420364,0.001011329,0.000004762196,9.13675e-8,0.0002739169,0.000001241972,0.9801127,0.0002766927],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00001071443,0.9967973,0.00001128201,0.00004001018,0.0001806458,0.0004615014,0.002269798,0.000009557129,0.0002191703],"genre_scores_gemma":[0.000005888684,0.9924529,0.0001165023,0.0002206949,0.0004388581,0.00004264708,0.006492819,0.00002402257,0.0002056361],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9485226,"threshold_uncertainty_score":0.9999932,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2103286528","doi":"10.1146/annurev.arplant.52.1.29","title":"A<scp>LKALOID</scp>B<scp>IOSYNTHESIS IN</scp>P<scp>LANTS</scp>: Biochemistry, Cell Biology, Molecular Regulation, and Metabolic Engineering Applications","year":2001,"lang":"en","type":"article","venue":"Annual Review of Plant Physiology and Plant Molecular Biology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":609,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Biochemistry; Biology; Biosynthesis; Metabolic engineering; Cell biology; Enzyme","authors":[{"name":"Peter J. Facchini","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004842825631711544,"gpt":0.2248560736952006,"spread":0.2200132480634891,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004275465,0.0005787329,0.0009543439,0.0001769945,0.0001292695,0.00001518887,0.0003957875,0.0008244648,0.000003827538],"category_scores_gemma":[0.0008234707,0.0005016862,0.0001827399,0.0002943386,0.0003030074,0.00001941113,0.0002148647,0.0003147253,0.00001049153],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000118067,"about_ca_system_score_gemma":0.0001153762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007051505,"about_ca_topic_score_gemma":0.0000316898,"domain_scores_codex":[0.9971346,0.0003283593,0.0007399467,0.001021717,0.0001119128,0.0006634407],"domain_scores_gemma":[0.9981986,0.0004762235,0.000418102,0.0005441307,0.0001551157,0.0002078621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000008967918,0.00009894031,0.0005822301,0.0007479903,0.0001913906,0.00002653951,0.00008458629,0.00005138807,0.9933841,0.001353153,0.002960446,0.0005103066],"study_design_scores_gemma":[0.0004329212,0.0001964303,0.0008324771,0.000291679,0.0001619696,0.0003828292,0.0001182889,0.00007600667,0.620199,0.0002160536,0.3769615,0.0001308919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7722099,0.2224591,0.001602688,0.00008541039,0.000112027,0.0007109831,0.002116276,0.00003430866,0.0006692538],"genre_scores_gemma":[0.7386273,0.243325,0.000885954,0.0009656988,0.0003222131,0.0002512287,0.01519754,0.00005919447,0.0003658607],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3740011,"threshold_uncertainty_score":0.9997435,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2163539844","doi":"10.1016/j.tibtech.2005.02.002","title":"Bringing medicinal plants into cultivation: opportunities and challenges for biotechnology","year":2005,"lang":"en","type":"review","venue":"Trends in biotechnology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":546,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Victoria Park","funders":"","keywords":"Biotechnology; Biology","authors":[{"name":"Peter H. Canter","is_ca":true},{"name":"Howard Thomas","is_ca":false},{"name":"Edzard Ernst","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1301843368292999,"gpt":0.3488634475535177,"spread":0.2186791107242178,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001722269,0.0003856005,0.0008213344,0.0007621368,0.00008829938,0.0000107493,0.0002976158,0.002421324,0.00000731144],"category_scores_gemma":[0.00005144465,0.0003207551,0.0001099119,0.0001411059,0.0002922106,0.000004915562,0.0001615021,0.0003060319,0.000002257142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004573882,"about_ca_system_score_gemma":0.00008412232,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002595189,"about_ca_topic_score_gemma":0.001084549,"domain_scores_codex":[0.9984807,0.0000462409,0.0004348729,0.0006425892,0.00006730999,0.0003283155],"domain_scores_gemma":[0.9993495,0.00002506314,0.0002161764,0.0003459606,0.0000201453,0.00004317342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000009472921,0.00002407115,3.225647e-7,0.0008588772,0.00008213627,0.00001218248,0.00003720164,3.309918e-7,0.0009354388,0.002296835,0.0009249348,0.9948182],"study_design_scores_gemma":[0.0003015635,0.0002172501,0.000001328971,0.0008215676,0.00008328981,0.0004154228,0.0001101305,0.000009416985,0.002354396,0.0000313396,0.9953187,0.0003355904],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006873668,0.9935228,0.0001505971,0.005450728,0.0001649157,0.0002428085,0.00005586333,0.00007336803,0.0002701588],"genre_scores_gemma":[0.0001110344,0.9958603,0.001123271,0.00004549769,0.0004133937,0.0001477446,0.001357863,0.0000376594,0.0009032199],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9944826,"threshold_uncertainty_score":0.9999245,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2166396989","doi":"10.1016/j.jbiotec.2003.10.011","title":"Selectable marker genes in transgenic plants: applications, alternatives and biosafety","year":2004,"lang":"en","type":"review","venue":"Journal of Biotechnology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":522,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Selectable marker; Biology; Marker gene; Gene; Transgene; Biosafety; Genetics; Computational biology; Reporter gene; Biotechnology; Gene expression","authors":[{"name":"Brian Miki","is_ca":true},{"name":"Sylvia G. McHugh","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01299199315520605,"gpt":0.2817061355107227,"spread":0.2687141423555166,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000153948,0.000204472,0.0006115873,0.0002490713,0.00003500121,0.00001116198,0.0002364475,0.0008520803,0.000004031457],"category_scores_gemma":[0.00001265422,0.0001481214,0.0001330343,0.0001356154,0.00008881684,0.000004659239,0.00003760354,0.0003223116,0.000002507638],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004090239,"about_ca_system_score_gemma":0.0002838939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001367183,"about_ca_topic_score_gemma":0.0001311209,"domain_scores_codex":[0.9990026,0.00005866368,0.0004952052,0.0002213831,0.00006701666,0.0001550664],"domain_scores_gemma":[0.9993845,0.00001040492,0.0003951772,0.0001450684,0.00002799077,0.00003685835],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002579937,0.00006919582,0.000008624866,0.001369672,0.0002835339,0.00002307484,0.00001318567,0.000004203108,0.04435331,0.0001650687,0.0002181916,0.9534661],"study_design_scores_gemma":[0.0002800293,0.0001472998,0.000005089624,0.001000898,0.0001015859,0.001447692,0.00001254181,3.981893e-7,0.02020413,0.00004453623,0.9765976,0.0001582178],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0007061349,0.9977888,0.0009395239,0.0001838779,0.00007511658,0.0002419321,0.00003580228,0.000005187233,0.00002359229],"genre_scores_gemma":[0.0005252148,0.9982866,0.0007526487,0.00001280996,0.0001926791,0.00001779036,0.00008760323,0.00001708159,0.000107577],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9763794,"threshold_uncertainty_score":0.6572024,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2768919282","doi":"10.1038/s41477-017-0063-z","title":"Pollen magnetofection for genetic modification with magnetic nanoparticles as gene carriers","year":2017,"lang":"en","type":"article","venue":"Nature Plants","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":403,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Pollen; Transformation (genetics); Transgene; Biology; Regeneration (biology); Genetically modified crops; Exogenous DNA; Biotechnology; Genome; Gene; Cell biology; Genetics; Botany","authors":[{"name":"Xiang Zhao","is_ca":false},{"name":"Zhigang Meng","is_ca":false},{"name":"Yan Wang","is_ca":false},{"name":"Wenjie Chen","is_ca":false},{"name":"Changjiao Sun","is_ca":false},{"name":"Bo Cui","is_ca":false},{"name":"Jinhui Cui","is_ca":false},{"name":"Manli Yu","is_ca":false},{"name":"Zhanghua Zeng","is_ca":false},{"name":"Sandui Guo","is_ca":false},{"name":"Dan Luo","is_ca":false},{"name":"Jerry Cheng","is_ca":false},{"name":"Rui Zhang","is_ca":true},{"name":"Haixin Cui","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009529368004426922,"gpt":0.2586919647682938,"spread":0.2491625967638669,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005556292,0.0001333036,0.00009730129,0.00002428515,0.0003909233,0.00007542635,0.000179638,0.0003084741,0.00000636312],"category_scores_gemma":[0.00005285855,0.0001026544,0.00003555483,0.00001618175,0.0000536197,0.000008320283,0.00002098448,0.00009027054,0.000009206552],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001177015,"about_ca_system_score_gemma":0.00007043919,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009231189,"about_ca_topic_score_gemma":0.0006937825,"domain_scores_codex":[0.9992871,0.00001835314,0.00009911416,0.000302319,0.0001092044,0.000183941],"domain_scores_gemma":[0.9993983,0.000005256055,0.00009935912,0.000352694,0.00007406696,0.00007030669],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002671557,0.00002195012,0.001437652,0.00001187991,0.00002930338,0.000004990982,0.00003361909,0.00007155009,0.9902245,0.00004606846,0.002792789,0.005058546],"study_design_scores_gemma":[0.0008553547,0.0005400858,0.02225854,0.00001323867,0.00004579322,0.0001448571,0.00002302211,0.0001787921,0.9299886,0.00004788205,0.04570347,0.0002003885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993961,0.004092029,0.0002935675,0.0003387381,0.0002672299,0.0003793238,0.0001041482,0.00001536305,0.0005486048],"genre_scores_gemma":[0.9940431,0.0002712424,0.001597899,0.000134819,0.0004479219,0.00005951635,0.0004340862,0.000017458,0.002994009],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06023593,"threshold_uncertainty_score":0.4186123,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1985866392","doi":"10.1016/j.envexpbot.2010.10.021","title":"Developing stress tolerant plants through in vitro selection—An overview of the recent progress","year":2010,"lang":"en","type":"article","venue":"Environmental and Experimental Botany","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":397,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biotic stress; Biology; Abiotic component; Abiotic stress; Phytotoxin; Biotechnology; Explant culture; Selection (genetic algorithm); Somaclonal variation; Resistance (ecology); Plant disease resistance; Tissue culture; Botany; Agronomy; In vitro; Ecology; Microbiology; Genetics","authors":[{"name":"Rajwant K. Kalia","is_ca":false},{"name":"Rohtas Singh","is_ca":false},{"name":"Manu P. Gangola","is_ca":true},{"name":"A. K. Dhawan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02042672818862651,"gpt":0.273032327174427,"spread":0.2526055989858005,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002895466,0.00009646158,0.00007923346,0.00000596922,0.0000786623,0.000008972432,0.00007472598,0.00007332832,0.00002474333],"category_scores_gemma":[8.981633e-7,0.00006721078,0.00002105428,0.00001920752,0.00009640793,0.00001001272,0.00006840238,0.00006702074,0.000001460755],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001731966,"about_ca_system_score_gemma":0.00001306759,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003408221,"about_ca_topic_score_gemma":0.000187599,"domain_scores_codex":[0.9994885,0.00002595529,0.0001187665,0.0001795459,0.00008190178,0.0001053238],"domain_scores_gemma":[0.9998376,0.000001271481,0.00004199413,0.00009154752,0.000001735077,0.00002589422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005190357,0.0001260488,0.00385962,0.000003414816,0.000008597501,6.760085e-7,0.0002718253,0.000001991256,0.9943849,0.00003024666,0.00003108822,0.001229707],"study_design_scores_gemma":[0.0002855769,0.00005764745,0.006208801,0.00001124247,0.000002640432,0.00003111171,0.0002900567,0.00001716311,0.9800149,0.000006681628,0.01297589,0.00009825313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915196,0.00800556,0.000003556805,0.00009541459,0.0001360473,0.0001469071,0.00003099821,0.000002648712,0.00005927976],"genre_scores_gemma":[0.9983923,0.0007826946,0.0004700164,0.000103438,0.00007063728,0.00001904179,0.00007263622,0.00000702987,0.00008225117],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01436994,"threshold_uncertainty_score":0.2740776,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2038242499","doi":"10.1007/s12033-007-0031-3","title":"History of plant tissue culture","year":2007,"lang":"en","type":"review","venue":"Molecular Biotechnology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":373,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Plant tissue culture; Tissue culture; Biology; Callus; Germplasm; Biotechnology; Hairy root culture; Somatic embryogenesis; In vitro; Cell biology; Botany; Biochemistry","authors":[{"name":"Trevor A. Thorpe","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02258896902581048,"gpt":0.2815900567844613,"spread":0.2590010877586508,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001268236,0.0004297093,0.0009378988,0.0002340498,0.00002426861,0.000004083541,0.0004970512,0.002844614,0.00001612556],"category_scores_gemma":[0.00005506542,0.0003448126,0.0003148156,0.000157695,0.0002481245,0.000001380178,0.0001733672,0.0003843436,0.00003279166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001250677,"about_ca_system_score_gemma":0.0004620064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002970411,"about_ca_topic_score_gemma":0.00006692247,"domain_scores_codex":[0.9983956,0.00007632162,0.0005002354,0.0005786822,0.0001411344,0.0003080209],"domain_scores_gemma":[0.9988231,0.0000051953,0.0003667553,0.0006868094,0.00005697444,0.00006116282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001185952,0.00007009361,1.470017e-7,0.002485713,0.0003357859,0.0001613257,0.0000215117,7.18416e-7,0.3186312,0.0011858,0.06041913,0.6166767],"study_design_scores_gemma":[0.00009468781,0.0002178912,2.726418e-8,0.0004966554,0.0002343827,0.0004116841,0.000003710522,2.697265e-7,0.1175828,0.000005224691,0.8806289,0.0003236968],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000008144565,0.9956001,0.002355405,0.00003067773,0.0004669428,0.0004305488,0.0001539374,0.00004294865,0.0009112639],"genre_scores_gemma":[0.00001066058,0.989459,0.0008524954,0.00006974226,0.0001688494,0.00003145376,0.003130467,0.00005732559,0.006219985],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8202098,"threshold_uncertainty_score":0.9999004,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1905767111","doi":"10.1104/pp.122.3.747","title":"Genetic Engineering of Glycinebetaine Production toward Enhancing Stress Tolerance in Plants: Metabolic Limitations","year":2000,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":364,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute","funders":"","keywords":"Betaine; Choline oxidase; Dry weight; Osmolyte; Choline; Biology; Shoot; Nicotiana tabacum; Osmoprotectant; Brassica; Salinity; Arabidopsis; Transgene; Botany; Biochemistry; Enzyme; Proline; Mutant; Gene; Amino acid; Ecology","authors":[{"name":"Jun Huang","is_ca":true},{"name":"Rozina Hirji","is_ca":true},{"name":"Luc Adam","is_ca":true},{"name":"Kevin Rozwadowski","is_ca":true},{"name":"Joe K. Hammerlindl","is_ca":true},{"name":"W. A. Keller","is_ca":true},{"name":"Gopalan Selvaraj","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01172967447279337,"gpt":0.2087490908843102,"spread":0.1970194164115168,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003843381,0.0001108887,0.0001796546,0.00004705697,0.00002300231,0.000003036731,0.00008173156,0.00009119485,0.00001662611],"category_scores_gemma":[0.00002447132,0.00009862394,0.00003211238,0.00007091171,0.00002262961,0.000005461708,0.0000118296,0.00006064405,0.000005679558],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004888462,"about_ca_system_score_gemma":0.00002922484,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001037177,"about_ca_topic_score_gemma":0.0008104173,"domain_scores_codex":[0.9993078,0.00003338957,0.0002120494,0.0002365029,0.00004894297,0.0001613213],"domain_scores_gemma":[0.9997555,0.00001145801,0.00004965509,0.0001340356,0.00002401493,0.00002532105],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007055609,0.00004541535,0.0001756449,0.00002751356,0.00002278798,0.000001906227,0.000183991,0.06199815,0.9361444,0.00001968454,0.0001184355,0.001191577],"study_design_scores_gemma":[0.0002773375,0.00008941984,0.03983605,0.00004279776,0.00001346245,0.00003931046,0.00004634324,0.000678297,0.9510074,0.00001522346,0.007802868,0.0001515559],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963988,0.003004481,0.0001341256,0.00006021095,0.0001390867,0.0001223875,0.00007048254,0.000009466382,0.00006093059],"genre_scores_gemma":[0.9961791,0.002182736,0.0004475027,0.00002834411,0.0003509159,0.00002434163,0.0006011672,0.000008602456,0.0001773128],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06131985,"threshold_uncertainty_score":0.4021768,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2058413317","doi":"10.1007/s002990000206","title":"Tryptophan is a precursor for melatonin and serotonin biosynthesis in in vitro regenerated St. John's wort ( Hypericum perforatum L. cv. Anthos) plants","year":2000,"lang":"en","type":"article","venue":"Plant Cell Reports","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":362,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; University of Guelph; Brown University","keywords":"Tryptamine; Melatonin; Hypericum perforatum; Serotonin; Tryptophan; Biology; Chromatography; Radioimmunoassay; Biosynthesis; In vitro; Biochemistry; Botany; Chemistry; Pharmacology; Endocrinology; Amino acid; Enzyme","authors":[{"name":"Susan J. Murch","is_ca":true},{"name":"Sankaran KrishnaRaj","is_ca":true},{"name":"Praveen K. Saxena","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007943775993379929,"gpt":0.2121942946273223,"spread":0.2042505186339423,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002461089,0.0002546535,0.0003066508,0.00009321897,0.00008315822,0.00004053715,0.00007878208,0.0003123844,0.00004514223],"category_scores_gemma":[0.00002867341,0.000219539,0.00005115166,0.0001362523,0.0000362864,0.00001280194,0.00002346705,0.0001134219,0.00000304317],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002402046,"about_ca_system_score_gemma":0.0001248362,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001888171,"about_ca_topic_score_gemma":0.0004687398,"domain_scores_codex":[0.9984058,0.00005647954,0.0004280015,0.0006232541,0.0001263828,0.0003601037],"domain_scores_gemma":[0.9994677,0.00001804368,0.0001339378,0.0002463392,0.00003444267,0.00009951544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004601211,0.0001243551,0.003218684,0.00004271659,0.0000218387,0.0003489146,0.0001947812,0.00005861326,0.9862861,8.744469e-7,0.006900004,0.002342986],"study_design_scores_gemma":[0.0004860098,0.00009476974,0.0009964381,0.00005131861,0.00001594693,0.0005776726,0.00003910786,0.0005403,0.9075115,0.00000576502,0.08939696,0.0002842066],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945348,0.003463536,0.0000108421,0.0001287572,0.0001263277,0.0006468458,0.0003085441,0.00001470746,0.0007656649],"genre_scores_gemma":[0.9900383,0.001637524,0.000549419,0.0001325667,0.0001376995,0.0001401226,0.002156419,0.00002811935,0.005179788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08249696,"threshold_uncertainty_score":0.8952538,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2044418302","doi":"10.1007/s11240-010-9800-y","title":"Isolated microspore culture techniques and recent progress for haploid and doubled haploid plant production","year":2010,"lang":"en","type":"article","venue":"Plant Cell Tissue and Organ Culture (PCTOC)","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":292,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute","funders":"","keywords":"Microspore; Biology; Doubled haploidy; Ploidy; Stamen; Botany; Biotechnology; Genetics; Gene","authors":[{"name":"A. M. R. Ferrie","is_ca":true},{"name":"Karen Caswell","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006319155878722021,"gpt":0.2231442035395305,"spread":0.2168250476608084,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001183489,0.000329177,0.0002568329,0.00003638435,0.0003343899,0.000120912,0.0001015634,0.0005305091,0.000007669325],"category_scores_gemma":[0.00002090448,0.0002329807,0.00002851175,0.00007368631,0.0001413772,0.00002297643,0.00006894011,0.0002451446,0.000001857436],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000648189,"about_ca_system_score_gemma":0.00003590925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002358988,"about_ca_topic_score_gemma":0.0006398811,"domain_scores_codex":[0.9987279,0.00002403339,0.000227427,0.0006371194,0.00009946696,0.0002841231],"domain_scores_gemma":[0.9993782,0.000005168184,0.0001298562,0.0001919942,0.0001421472,0.000152614],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002424339,0.00006719279,0.0006145857,0.0001460241,0.00004136746,0.00001333478,0.000828515,1.018525e-7,0.9593793,0.00005200887,0.0343611,0.004254043],"study_design_scores_gemma":[0.0003849086,0.0002740567,0.00005208209,0.00002290472,0.00004205104,0.0006062256,0.00006982118,0.000005384615,0.5252514,0.0000155467,0.4730602,0.0002153957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9675489,0.02662884,0.00014798,0.001520813,0.0005962827,0.002341917,0.0007296224,0.0001466984,0.0003389387],"genre_scores_gemma":[0.9010267,0.03951013,0.01204677,0.0004249289,0.00394717,0.0003441155,0.0160648,0.000140495,0.02649488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4386991,"threshold_uncertainty_score":0.9500676,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073318687","doi":"10.1080/07060660109506935","title":"Genetic engineering of plants to enhance resistance to fungal pathogensa review of progress and future prospects","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Plant Pathology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":239,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false},"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Plant disease resistance; Pathogen; Elicitor; Gene; Transgene; Genetically modified crops; Hypersensitive response; Plant defense against herbivory; Virulence; Genetics; Microbiology","authors":[{"name":"Zamir K. Punja","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.004598070214338083,"gpt":0.2126663969762729,"spread":0.2080683267619348,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001469252,0.00009795072,0.0002422917,0.00009099265,0.00002430654,0.000004151592,0.0001186536,0.00009409843,0.000005430373],"category_scores_gemma":[0.00005348753,0.00008295177,0.00003469191,0.00007549846,0.00002933934,0.000003204755,0.00001067054,0.00006686292,6.421367e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001231139,"about_ca_system_score_gemma":0.0002236786,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002146731,"about_ca_topic_score_gemma":0.006447414,"domain_scores_codex":[0.999297,0.00003291467,0.0002932971,0.00013398,0.00006951643,0.0001733177],"domain_scores_gemma":[0.9993478,0.000004749002,0.000153692,0.0001142042,0.0001212027,0.0002583402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001025848,0.00001403373,0.006374052,0.0006423749,0.00004074187,0.001392127,0.000227417,0.00003846647,0.9760001,0.00004113185,0.01087566,0.004251256],"study_design_scores_gemma":[0.0003372368,0.001066166,0.04689923,0.003143257,0.00007251735,0.01079665,0.0000553376,0.000003689757,0.3657115,0.000006300066,0.5715485,0.0003595911],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8747671,0.1236834,0.0001934941,0.0006396633,0.000215869,0.0001817324,0.0002779079,0.000001006987,0.00003979457],"genre_scores_gemma":[0.9693456,0.02288088,0.006057826,0.0005642179,0.0008299953,0.00001015316,0.00006734367,0.0000182495,0.0002256954],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6102886,"threshold_uncertainty_score":0.3597808,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2346882368","doi":"10.3389/fpls.2016.00584","title":"Alleviation of Drought Stress and Metabolic Changes in Timothy (Phleum pratense L.) Colonized with Bacillus subtilis B26","year":2016,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":238,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Shoot; Biology; Endophyte; Photosynthesis; Stomatal conductance; Drought tolerance; Botany; Agronomy","authors":[{"name":"François Gagné-Bourque","is_ca":true},{"name":"Annick Bertrand","is_ca":true},{"name":"Annie Claessens","is_ca":true},{"name":"Konstantinos A. Aliferis","is_ca":true},{"name":"Suha Jabaji","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006679461873847829,"gpt":0.2038321924568831,"spread":0.1971527305830352,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002196152,0.0000808597,0.0001333224,0.0001029159,0.00003675014,0.00001133631,0.0001156759,0.00006423349,0.000001532478],"category_scores_gemma":[0.00004642525,0.00004846626,0.000007604228,0.0001822135,0.0002415073,0.00001632706,0.00003003776,0.00002791973,3.368438e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001371001,"about_ca_system_score_gemma":0.00009786869,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007412659,"about_ca_topic_score_gemma":0.003706927,"domain_scores_codex":[0.99932,0.00003102771,0.0001061481,0.0002524701,0.0001282494,0.000162077],"domain_scores_gemma":[0.9997377,0.000006414457,0.00006981726,0.0001070162,0.0000418647,0.00003722536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001809154,0.00003068369,0.06067294,0.00001387598,0.000009254442,0.000008291227,0.0002695073,0.00002738252,0.9358126,0.00008320279,0.0009175608,0.001973804],"study_design_scores_gemma":[0.0009867144,0.0001749393,0.02728421,0.00009236229,0.000009043161,0.00002295865,0.0001339936,0.0003112038,0.9628283,0.00001809767,0.007988611,0.0001495144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959324,0.001978162,0.00126858,0.0003416026,0.0001398951,0.0001462575,0.0001081659,0.000003472898,0.00008144446],"genre_scores_gemma":[0.9960616,0.001717035,0.001642373,0.00003403719,0.00003100641,0.00001194998,0.00004658723,0.000003713908,0.0004516994],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03338873,"threshold_uncertainty_score":0.2068552,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2084233047","doi":"10.1016/s0168-1656(00)00270-4","title":"Increased ability of transgenic plants expressing the bacterial enzyme ACC deaminase to accumulate Cd, Co, Cu, Ni, Pb, and Zn","year":2000,"lang":"en","type":"article","venue":"Journal of Biotechnology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":238,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Cauliflower mosaic virus; Lycopersicon; Genetically modified tomato; Genetically modified crops; Transgene; Biology; Solanaceae; Shoot; Agrobacterium; Promoter; Botany; Beta-glucuronidase; Gene; Horticulture; Gene expression; Biochemistry","authors":[{"name":"Varvara P. Grichko","is_ca":true},{"name":"Brendan Filby","is_ca":true},{"name":"Bernard R. Glick","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01184760033356873,"gpt":0.2553818103495734,"spread":0.2435342100160046,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002168367,0.000108818,0.0002030963,0.00005480615,0.00007055253,0.00001363294,0.0002050793,0.0003444081,0.00004710602],"category_scores_gemma":[0.00004539731,0.00007082266,0.00006095937,0.00005381177,0.0001259965,0.000007558236,0.00002544415,0.0001481417,0.000001908963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009085982,"about_ca_system_score_gemma":0.00006251752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004398866,"about_ca_topic_score_gemma":0.000134068,"domain_scores_codex":[0.9992505,0.00007466773,0.0003092577,0.0001442016,0.00008106101,0.0001402516],"domain_scores_gemma":[0.9995552,0.00001508404,0.0001504092,0.0001871014,0.00003634798,0.00005584675],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004923992,0.00004260082,0.0001044136,0.000008423523,0.0000494355,0.000007518699,0.0000893024,0.00002466239,0.9877595,0.000004035091,0.001022234,0.01039551],"study_design_scores_gemma":[0.0006232372,0.0003738775,0.001800199,0.00002301577,0.00002898339,0.0003227633,0.00004356837,0.000008132493,0.966362,0.00001754393,0.03031567,0.0000810311],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973348,0.001228722,0.0002557869,0.0009105467,0.00008939836,0.0001060683,0.00004020358,0.000005038516,0.00002948087],"genre_scores_gemma":[0.998547,0.0007372744,0.0003522109,0.0000952531,0.0001846151,0.000001486515,0.0000216467,0.00000684021,0.00005369972],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02929344,"threshold_uncertainty_score":0.2888064,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2151765209","doi":"10.1111/j.1467-7652.2006.00209.x","title":"<i>Agrobacterium</i>‐mediated transformation of cereals: a promising approach crossing barriers","year":2006,"lang":"en","type":"review","venue":"Plant Biotechnology Journal","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":214,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Agrobacterium; Biology; Transformation (genetics); Sorghum; Agrobacterium tumefaciens; Biotechnology; Agronomy; Gene; Genetics","authors":[{"name":"Ashok K. Shrawat","is_ca":true},{"name":"Horst Lörz","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02076431712410879,"gpt":0.2611092096004277,"spread":0.2403448924763189,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003200705,0.0003770239,0.0008955254,0.0002730695,0.0002964157,0.00008957258,0.0003420298,0.001793378,0.000004798856],"category_scores_gemma":[0.0000676339,0.0002754596,0.0003235006,0.0001980071,0.0002448193,0.00001129356,0.00004055174,0.0006734193,0.000003195426],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005087215,"about_ca_system_score_gemma":0.0006746186,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000230564,"about_ca_topic_score_gemma":0.00004121135,"domain_scores_codex":[0.9982265,0.0001373006,0.0008383867,0.0003170233,0.0001502843,0.0003305156],"domain_scores_gemma":[0.998802,0.0000134972,0.0008000334,0.000224343,0.00006776049,0.00009235311],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001239163,0.0002148549,0.00001522057,0.01018821,0.001283957,0.00008193746,0.0002767281,0.00005558656,0.2315875,0.00017763,0.009897209,0.7460972],"study_design_scores_gemma":[0.0002818781,0.000108637,7.383034e-7,0.00131267,0.0003185714,0.005699356,0.00003045965,0.00002264667,0.01341825,0.000005113181,0.9784927,0.000308965],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0009290638,0.9943396,0.00326263,0.000057882,0.0002178489,0.0003707992,0.0005192043,0.00003201435,0.0002708843],"genre_scores_gemma":[0.0004344226,0.992788,0.0008930828,0.00001321063,0.0003315939,0.00001470081,0.005384938,0.00003500514,0.0001050517],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9685955,"threshold_uncertainty_score":0.9999698,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2014406236","doi":"10.1016/s0734-9750(01)00054-4","title":"Biotransformations using plant cells, organ cultures and enzyme systems: current trends and future prospects","year":2001,"lang":"en","type":"article","venue":"Biotechnology Advances","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":206,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"","keywords":"Biotransformation; Enzyme; Biochemistry; Heterologous expression; Mutagenesis; Biology; Terpenoid; Gene; Chemistry; Recombinant DNA; Mutation","authors":[{"name":"Archana Giri","is_ca":false},{"name":"Vikas Dhingra","is_ca":false},{"name":"Charu Chandra Giri","is_ca":false},{"name":"Ajay Singh","is_ca":true},{"name":"Owen P. Ward","is_ca":true},{"name":"M. Lakshmi Narasu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0079645572283609,"gpt":0.2462178591019538,"spread":0.2382533018735929,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003288143,0.0001382728,0.0001204045,0.00007426641,0.0001851316,0.00002507711,0.00006790401,0.0002990233,0.000001854652],"category_scores_gemma":[0.000004618451,0.0001021561,0.00001657536,0.0001181075,0.0001281578,0.00001484968,0.00002808367,0.0001003576,8.193547e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007800073,"about_ca_system_score_gemma":0.00001626818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001290239,"about_ca_topic_score_gemma":0.0002176561,"domain_scores_codex":[0.9994113,0.00001617125,0.0001258435,0.0002440922,0.00004824796,0.0001543771],"domain_scores_gemma":[0.9997665,0.00000243879,0.0000587761,0.0001106802,0.00002225942,0.00003938631],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001961093,0.00002662445,0.0002797577,0.00004175098,0.0000231445,0.000005026354,0.00006972157,0.00003489691,0.9743499,0.001409374,0.0007175846,0.02302264],"study_design_scores_gemma":[0.0001766047,0.00006823895,0.0000745646,0.00001632304,0.00001742712,0.0002967972,0.0001559484,0.0001093811,0.3579725,0.00001232869,0.6409747,0.0001251955],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.669309,0.3257619,0.001792787,0.001869682,0.0006675752,0.0002298787,0.0001367314,0.00008776505,0.0001447241],"genre_scores_gemma":[0.8796188,0.1184234,0.0007259762,0.00003559305,0.0006525492,0.00001511296,0.0002967815,0.00001222081,0.0002196582],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6402571,"threshold_uncertainty_score":0.4165804,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2126831960","doi":"10.1139/b02-065","title":"Hydroxycinnamic acid amide metabolism: physiology and biochemistry","year":2002,"lang":"en","type":"article","venue":"Canadian Journal of Botany","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Hydroxycinnamic acid; Biochemistry; Putrescine; Biosynthesis; Biology; Secondary metabolism; Cell wall; Tyramine; Spermidine; Enzyme","authors":[{"name":"Peter J. Facchini","is_ca":false},{"name":"Jillian M. Hagel","is_ca":false},{"name":"Katherine G. Zulak","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007213161753211818,"gpt":0.1875588324926078,"spread":0.180345670739396,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005587113,0.00008974938,0.0001276277,0.00003929559,0.00007504233,0.00001786108,0.00009902694,0.0001201346,0.00005755351],"category_scores_gemma":[0.00004249976,0.00007562109,0.00004971017,0.00004116846,0.0000814224,0.000005004587,0.000007441708,0.00008973431,0.000003988718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001564497,"about_ca_system_score_gemma":0.0001359189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002312105,"about_ca_topic_score_gemma":0.004555104,"domain_scores_codex":[0.9995115,0.00002126754,0.0001535286,0.0001101747,0.00004275912,0.0001607148],"domain_scores_gemma":[0.9994763,0.000002305328,0.00009062455,0.00009956471,0.00007081847,0.0002604233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000004393641,0.000004109615,0.0001660863,0.000004018259,0.00003694533,0.00002933047,0.0000388346,0.00000864873,0.9877847,0.00001268969,0.01101303,0.0008971799],"study_design_scores_gemma":[0.0003324015,0.00007664578,0.001283765,0.00001299736,0.00003749535,0.00124969,0.00003816004,0.00007609171,0.8329692,0.0000322747,0.1637449,0.0001463073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9664601,0.03226077,0.00005503256,0.0005380861,0.0001796097,0.00002596797,0.00001752146,0.000001295313,0.0004616274],"genre_scores_gemma":[0.9971728,0.000574255,0.0001561608,0.0003003287,0.0005182287,6.485947e-7,0.000009332151,0.000008102553,0.001260126],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1548155,"threshold_uncertainty_score":0.3083738,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2051598894","doi":"10.1007/s11248-007-9066-2","title":"pORE: a modular binary vector series suited for both monocot and dicot plant transformation","year":2007,"lang":"en","type":"article","venue":"Transgenic Research","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":186,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Arizona Biomedical Research Commission","keywords":"Biology; Multiple cloning site; ColE1; Transformation (genetics); Selectable marker; Restriction enzyme; Expression cassette; Origin of replication; Expression vector; Agrobacterium; Shuttle vector; Plasmid; Genetics; Reporter gene; Cre recombinase; Restriction site; Computational biology; Vector (molecular biology); Gene; Transgene; Recombinant DNA; Gene expression","authors":[{"name":"Catherine Coutu","is_ca":true},{"name":"J. E. Brandle","is_ca":true},{"name":"Dan Brown","is_ca":true},{"name":"Kirk Brown","is_ca":true},{"name":"Brian Miki","is_ca":true},{"name":"John Simmonds","is_ca":true},{"name":"Dwayne D. Hegedus","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.051952197875217,"gpt":0.3394711927380602,"spread":0.2875189948628432,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007450653,0.0001057833,0.0001048998,0.00007963031,0.0002071047,0.00003121882,0.0001007338,0.0001693195,0.000006372558],"category_scores_gemma":[0.00001949052,0.00008661679,0.00005221786,0.0001098366,0.0000972282,0.00001328226,0.00001010785,0.0001098162,0.000001798357],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001405608,"about_ca_system_score_gemma":0.00007342087,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006556763,"about_ca_topic_score_gemma":0.0007756227,"domain_scores_codex":[0.9990067,0.00005343383,0.0001765832,0.0002373018,0.0001868692,0.0003391442],"domain_scores_gemma":[0.9996348,0.00002280894,0.00001762496,0.000136514,0.0000892659,0.00009898538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006831634,0.00003728315,0.00004477693,0.0000751364,0.00004028167,0.00000437374,0.0006088691,0.0000181913,0.9947203,0.0005715913,0.001211033,0.001985019],"study_design_scores_gemma":[0.0009008652,0.0007838061,0.001767026,0.0000160574,0.00001505151,0.00005485414,0.0002578674,0.0003059151,0.8889772,0.00007083785,0.1066927,0.0001578159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845251,0.00275961,0.01073847,0.000815056,0.00005700669,0.0007111024,0.0001361683,0.00001548264,0.000241941],"genre_scores_gemma":[0.9957815,0.001026663,0.0003117508,0.00002791501,0.0002078261,0.00005432327,0.001411441,0.00001581191,0.001162812],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1057431,"threshold_uncertainty_score":0.353213,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078780589","doi":"10.1111/j.1600-079x.2009.00711.x","title":"Melatonin and serotonin in flowers and fruits of <i>Datura metel</i> L.","year":2009,"lang":"en","type":"article","venue":"Journal of Pineal Research","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":182,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Melatonin; Anthesis; Biology; Serotonin; Ovule; Pineal gland; Botany; Solanaceae; Horticulture; Endocrinology; Receptor; Biochemistry","authors":[{"name":"Susan J. Murch","is_ca":true},{"name":"Ali Ramazan Alan","is_ca":false},{"name":"Jin Cao","is_ca":false},{"name":"Praveen K. Saxena","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03102288107557179,"gpt":0.354755137402776,"spread":0.3237322563272042,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007087851,0.0000512548,0.0001233837,0.00009566441,0.00002923563,0.00001498529,0.00007383265,0.00008812254,0.000002450862],"category_scores_gemma":[0.0001813538,0.00003687404,0.00001960409,0.0001183628,0.00005615926,0.00000765113,0.00002740486,0.0001909863,2.517542e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000808811,"about_ca_system_score_gemma":0.00009700049,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002224088,"about_ca_topic_score_gemma":0.00007875625,"domain_scores_codex":[0.999326,0.00008109029,0.0001868659,0.00008727927,0.0001947207,0.0001240824],"domain_scores_gemma":[0.999583,0.00001732781,0.00005994945,0.00005872149,0.0002125608,0.00006841317],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001281863,0.00002791936,0.0009632665,0.00001118231,0.00001341709,0.00001876587,0.00009366779,0.00001423892,0.9895558,0.00006967321,0.002475559,0.006628305],"study_design_scores_gemma":[0.0009108822,0.001273168,0.01621775,0.00007006625,0.000007318207,0.0002414014,0.0001117596,0.00007387115,0.9611504,0.00009522679,0.01977325,0.00007488366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896334,0.009095539,0.00002459517,0.0008405721,0.00002501759,0.0000726818,0.00000301071,4.427692e-7,0.0003046893],"genre_scores_gemma":[0.9964963,0.002640645,0.0004458489,0.00003815889,0.0001161826,5.881875e-7,0.000005490665,0.000002914835,0.0002538963],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02840539,"threshold_uncertainty_score":0.150368,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2743809348","doi":"10.1186/s40529-017-0188-4","title":"A perspective on orchid seed and protocorm development","year":2017,"lang":"en","type":"review","venue":"Botanical studies","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":181,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Meristem; Micropropagation; Germination; Botany; Embryo; Explant culture; Orchidaceae; Embryo rescue; Shoot; Pollination; Cell biology; Pollen; In vitro","authors":[{"name":"Edward C. Yeung","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1627481123000478,"gpt":0.4340371593661607,"spread":0.2712890470661129,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009139824,0.0002544822,0.0006415063,0.00001215692,0.0002806653,0.00002981149,0.0001262312,0.0002082096,9.194559e-7],"category_scores_gemma":[0.0002031155,0.0001529431,0.0001039494,0.00001568164,0.00009645084,0.000001248882,0.0001773213,0.00011988,0.00001649073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006767076,"about_ca_system_score_gemma":0.0001409231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007013507,"about_ca_topic_score_gemma":0.0002713517,"domain_scores_codex":[0.9991334,0.00004588716,0.0002007827,0.0003976531,0.00008567625,0.0001365636],"domain_scores_gemma":[0.999522,0.00001599168,0.0001450115,0.0002002752,0.00007048852,0.00004619902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004434735,0.0001012209,0.00000747684,0.002620765,0.002025657,0.00002685712,0.0002719116,8.94897e-8,0.0002372362,0.000555695,0.007026835,0.9870819],"study_design_scores_gemma":[0.0001113271,0.0001494781,0.00001571277,0.001481619,0.0001169875,0.0000283885,0.00004158611,5.079279e-8,0.0001194931,0.000008873184,0.997712,0.0002144727],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00003037279,0.9971973,0.000004368079,0.00006732941,0.00007618712,0.00146773,0.00001113107,0.000007861647,0.001137695],"genre_scores_gemma":[0.00002505217,0.9945223,0.0001287803,0.00002866474,0.0004178713,0.0008155676,0.00004678254,0.00001540223,0.00399955],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9906852,"threshold_uncertainty_score":0.623684,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2044976626","doi":"10.1073/pnas.1307504110","title":"ATP-binding cassette transporter controls leaf surface secretion of anticancer drug components in <i>Catharanthus roseus</i>","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Brock University","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Genome Canada; Genome Alberta; United States - Israel Binational Agricultural Research and Development Fund; Canada Research Chairs; Genome Prairie; McGill University","keywords":"Catharanthus roseus; Apocynaceae; Transporter; ATP-binding cassette transporter; Vinca; Biology; Trichome; Secretion; Epidermis (zoology); Botany; Biochemistry; Gene","authors":[{"name":"Yu Fang","is_ca":true},{"name":"Vincenzo De Luca","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02496137236461777,"gpt":0.2651811763234498,"spread":0.2402198039588321,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000410544,0.0000700459,0.0001265094,0.00004001084,0.00005609914,0.000008969432,0.000266675,0.00007730882,0.0000056373],"category_scores_gemma":[0.00003842105,0.0000467857,0.00004875503,0.0001746453,0.0002868936,0.00003582413,0.00002379997,0.00006580113,6.07467e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009612194,"about_ca_system_score_gemma":0.00002212891,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007031085,"about_ca_topic_score_gemma":0.000002651136,"domain_scores_codex":[0.9990782,0.000006204369,0.0002616147,0.0001632703,0.0003893072,0.0001013747],"domain_scores_gemma":[0.9995604,0.00001373308,0.0002514196,0.000007269537,0.000149482,0.00001765621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001382206,0.00002488866,0.01964907,0.00002743303,0.000009564272,3.871203e-9,0.0001406037,0.0001894218,0.9791308,0.0002481722,0.0005333161,0.00003290787],"study_design_scores_gemma":[0.0002444954,0.000021359,0.06886858,0.00005984667,0.00000719127,0.000003342033,0.00006146907,0.0005576713,0.9296026,0.0001975748,0.0003193154,0.00005650556],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973749,0.0003330057,0.000001994741,0.001643295,0.00001788504,0.0001891688,0.00003069384,0.000001759471,0.0004072872],"genre_scores_gemma":[0.999378,0.0000886565,0.0001743498,0.0001227651,0.00004274615,0.000005222316,0.000004502798,0.000002603177,0.0001811969],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04952815,"threshold_uncertainty_score":0.1907865,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1996147024","doi":"10.1016/s0031-9422(02)00074-2","title":"Jasmonic acid-induced hypericin production in cell suspension cultures of Hypericum perforatum L. (St. John's wort)","year":2002,"lang":"en","type":"article","venue":"Phytochemistry","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Hypericin; Hypericum perforatum; Jasmonic acid; Methyl jasmonate; Hypericum; Salicylic acid; Cell culture; Hyperforin; Suspension culture; Cell growth; Elicitor; Chemistry; Botany; Biology; Biochemistry; Pharmacology","authors":[{"name":"Tom W. N. Walker","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01354874176727069,"gpt":0.2280497523635052,"spread":0.2145010105962345,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006976555,0.0001860142,0.0001861347,0.00002732393,0.00005990957,0.00001219233,0.0001348174,0.0002307439,0.00004226944],"category_scores_gemma":[0.00005414247,0.0001604265,0.00007209882,0.0001601999,0.00004218156,0.000008842385,0.00004470952,0.0001513882,0.000008379369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002569387,"about_ca_system_score_gemma":0.00003551506,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002411968,"about_ca_topic_score_gemma":0.00006182356,"domain_scores_codex":[0.9989874,0.00002593223,0.0002383086,0.0003968347,0.0001387587,0.0002127468],"domain_scores_gemma":[0.999427,0.000002770337,0.0001191172,0.0003052931,0.00009107246,0.00005473874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003073491,0.0001486404,0.0007351564,0.00006597566,0.00001043848,0.000005348918,0.0000894298,0.00006991321,0.9825695,8.254261e-7,0.01587318,0.0004008651],"study_design_scores_gemma":[0.0003173692,0.00007942005,0.0003848913,0.00003457,0.00001471466,0.00004007877,0.0001254511,0.00006901623,0.9920507,0.000003901731,0.006680033,0.0001998647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922709,0.004030468,0.000005112584,0.0002284071,0.0001764755,0.0001639208,0.000007777186,0.00001320389,0.003103741],"genre_scores_gemma":[0.9951247,0.000474949,0.0001611808,0.00004607792,0.0004260231,0.00002492982,0.0002163595,0.00001659227,0.003509202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009481194,"threshold_uncertainty_score":0.6542003,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2111990060","doi":"10.1007/s00425-004-1327-1","title":"Polyphenol oxidase overexpression in transgenic Populus enhances resistance to herbivory by forest tent caterpillar (Malacosoma disstria)","year":2004,"lang":"en","type":"article","venue":"Planta","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":172,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Polyphenol oxidase; Populus trichocarpa; Botany; Frass; Enzyme assay; Genetically modified crops; Transgene; Larva; Enzyme; Biochemistry; Gene; Peroxidase","authors":[{"name":"Jiehua Wang","is_ca":true},{"name":"C. Peter Constabel","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006920333227616887,"gpt":0.2255941393946486,"spread":0.2186738061670317,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004946155,0.0001550704,0.0001350831,0.00003141222,0.00006967536,0.00002172922,0.0001526798,0.0001384174,0.000004801426],"category_scores_gemma":[0.00001352033,0.0001275492,0.0000432471,0.00006966667,0.00002044293,0.000007306302,0.00002652542,0.00006478172,0.00001507077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003358825,"about_ca_system_score_gemma":0.00005269162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000389958,"about_ca_topic_score_gemma":0.008931373,"domain_scores_codex":[0.999086,0.00002816253,0.0001924494,0.0003321208,0.0001207785,0.0002404485],"domain_scores_gemma":[0.9996514,0.000004194968,0.000044718,0.0001864485,0.00001444511,0.00009878232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002526561,0.00007162541,0.0006703914,0.00003691595,0.00001183397,0.00001316958,0.0001266189,0.0001874064,0.9938142,0.00003133073,0.004703186,0.00008064476],"study_design_scores_gemma":[0.0006830415,0.0001024389,0.001157526,0.0002448219,0.000007223172,0.00001414454,0.00003491462,0.000002293069,0.9751258,0.00003234655,0.02238989,0.0002055603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937652,0.004564174,0.0004637835,0.0005271609,0.00008413426,0.000235939,0.0001246714,0.00001300651,0.0002219608],"genre_scores_gemma":[0.9968702,0.0003272321,0.0001773999,0.0001841013,0.0001450445,0.0000325225,0.000658113,0.00001416383,0.001591204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01868842,"threshold_uncertainty_score":0.5201304,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1992208431","doi":"10.1093/treephys/20.14.921","title":"Influencing micropropagation and somatic embryogenesis in mature trees by manipulation of phase change, stress and culture environment","year":2000,"lang":"en","type":"review","venue":"Tree Physiology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":172,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Natural Resources Canada; Canadian Forest Service; University of Victoria","funders":"","keywords":"Somatic embryogenesis; Micropropagation; Explant culture; Biology; Tissue culture; Botany; Somatic cell; Cell biology; In vitro; Genetics","authors":[{"name":"Patrick von Aderkas","is_ca":true},{"name":"J. M. Bonga","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02313044346011234,"gpt":0.2772816696811656,"spread":0.2541512262210533,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003369711,0.0002436306,0.0005421478,0.00005415735,0.00002919122,0.000006875678,0.00006692936,0.0004307558,0.000006368127],"category_scores_gemma":[0.000003946368,0.0001825892,0.0000570704,0.00004456294,0.00006155895,0.000006552552,0.00003681017,0.00008701301,0.000001459049],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001405861,"about_ca_system_score_gemma":0.00001848034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005411118,"about_ca_topic_score_gemma":0.0002290093,"domain_scores_codex":[0.9990822,0.0001093134,0.0002908421,0.0003445783,0.0000484096,0.0001246344],"domain_scores_gemma":[0.9995982,0.00000683075,0.0002052966,0.0001495139,0.000008896067,0.0000312726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002794134,0.00008998555,0.00001800464,0.002614664,0.00005988881,0.000001434767,0.0001850319,0.000008716717,0.6454442,0.000002333241,0.0002319784,0.3513158],"study_design_scores_gemma":[0.002152232,0.000877144,0.001015044,0.004610966,0.0009179232,0.0001128739,0.00009204418,0.0001038233,0.07388704,0.00004802344,0.9150846,0.001098265],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1410821,0.8583667,0.000007639249,0.000009490584,0.00001848144,0.0003685576,0.0001351041,0.000003221347,0.000008710968],"genre_scores_gemma":[0.009416048,0.9860694,0.00007716056,0.00001611548,0.0001264123,0.00007129544,0.00396649,0.00001777346,0.0002392657],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9148526,"threshold_uncertainty_score":0.744577,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2529096635","doi":"10.1105/tpc.16.00486","title":"Characterization of a Pipecolic Acid Biosynthesis Pathway Required for Systemic Acquired Resistance","year":2016,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Pipecolic acid; Biology; Biosynthesis; Resistance (ecology); Computational biology; Biochemistry; Amino acid; Ecology; Gene","authors":[{"name":"Pingtao Ding","is_ca":true},{"name":"Dmitrij Rekhter","is_ca":false},{"name":"Yuli Ding","is_ca":true},{"name":"Kirstin Feussner","is_ca":false},{"name":"Lucas Busta","is_ca":true},{"name":"Sven Haroth","is_ca":false},{"name":"Shaohua Xu","is_ca":false},{"name":"Xin Li","is_ca":true},{"name":"Reinhard Jetter","is_ca":true},{"name":"Ivo Feußner","is_ca":false},{"name":"Yuelin Zhang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01303924765030913,"gpt":0.195189953459368,"spread":0.1821507058090589,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001263939,0.00008904918,0.0001087525,0.00001622143,0.00006601305,0.000006897749,0.0001404709,0.0000904051,0.000004444423],"category_scores_gemma":[0.0000255531,0.00004621306,0.00006284033,0.00003171853,0.00003524922,0.000004017118,0.00001551983,0.000008755166,0.000006763723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008713567,"about_ca_system_score_gemma":0.00004280984,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003328193,"about_ca_topic_score_gemma":0.00007109078,"domain_scores_codex":[0.999456,0.00003982071,0.0001646642,0.000156608,0.00006068013,0.0001222584],"domain_scores_gemma":[0.9995493,0.0000230289,0.0001442418,0.0002111513,0.00004941297,0.00002285927],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001677086,0.00001656392,0.00001341589,0.00005044026,0.00001991784,6.332425e-7,0.00006793923,3.287992e-7,0.9980917,0.00008265875,0.001215973,0.0002727354],"study_design_scores_gemma":[0.000258377,0.0000464065,0.00004923893,0.00006682205,0.00002038515,0.00001480485,0.00001297528,0.000004849525,0.9547302,0.000008517303,0.04470693,0.00008053803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934601,0.0008186519,0.00381952,0.0005670083,0.0001026452,0.0003618226,0.0006797266,0.00001115859,0.0001794064],"genre_scores_gemma":[0.9924917,0.000340369,0.00006455647,0.00004990919,0.0001995909,0.00004624165,0.0004527878,0.00001076001,0.006344039],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04349096,"threshold_uncertainty_score":0.1884514,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2076645515","doi":"10.1007/s002990100365","title":"Microsatellite DNA somaclonal variation in micropropagated trembling aspen (Populus tremuloides)","year":2001,"lang":"en","type":"article","venue":"Plant Cell Reports","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Dalhousie University; University of Alberta","funders":"","keywords":"Somaclonal variation; Biology; Microsatellite; Locus (genetics); Genetic variation; Genotype; Botany; Genetics; Genetic marker; Allele; Tissue culture; Gene","authors":[{"name":"Mahfuzur Rahman","is_ca":true},{"name":"Om P. Rajora","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01094919376486765,"gpt":0.2182512586511983,"spread":0.2073020648863307,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002075501,0.0001676892,0.0001551902,0.00006789211,0.00007231844,0.00004001468,0.00006959119,0.0001579522,0.0000273425],"category_scores_gemma":[0.0000276881,0.0001479416,0.00005681033,0.0001117482,0.00001730723,0.000007955,0.00003054418,0.00009012721,0.00001434296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002936575,"about_ca_system_score_gemma":0.00008749041,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005994943,"about_ca_topic_score_gemma":0.002453939,"domain_scores_codex":[0.9987727,0.00004550249,0.000388696,0.0004157571,0.0001267562,0.000250603],"domain_scores_gemma":[0.9994882,0.000006644295,0.0001836496,0.0002100586,0.00004506376,0.00006635473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007486392,0.00008269816,0.01002083,0.00001103294,0.00001395769,0.0009397416,0.0000895722,0.0001915222,0.987093,0.000002675785,0.0009138951,0.0005662012],"study_design_scores_gemma":[0.0003184191,0.0000428278,0.007173408,0.00002097903,0.00001813932,0.002101105,0.0000130747,0.0001780114,0.9060463,0.00002107995,0.08383938,0.0002272895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949753,0.001800273,0.0002631359,0.00006729172,0.0002716642,0.0001989153,0.00001804279,0.00001908493,0.002386252],"genre_scores_gemma":[0.9928693,0.0006329603,0.0003310828,0.00008397681,0.0002759038,0.00001040307,0.002210724,0.00001750855,0.003568116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08292548,"threshold_uncertainty_score":0.6032885,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1965939121","doi":"10.1007/s11627-013-9547-3","title":"Molecular regulation of plant somatic embryogenesis","year":2013,"lang":"en","type":"article","venue":"In Vitro Cellular & Developmental Biology - Plant","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Winnipeg; University of Manitoba; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Somatic embryogenesis; Biology; Somatic cell; Cell biology; Meristem; Embryogenesis; Embryonic stem cell; Transcriptome; Genetics; Maternal to zygotic transition; Gene; Embryo; Gene expression; Zygote","authors":[{"name":"Mohamed Elhiti","is_ca":true},{"name":"Claudio Stasolla","is_ca":true},{"name":"Aiming Wang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007253461583270203,"gpt":0.1941061722328906,"spread":0.1868527106496204,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001215853,0.0001957362,0.0002375031,0.00009577919,0.00004930602,0.0000101516,0.0001670177,0.0002708799,0.00004426293],"category_scores_gemma":[0.00002270954,0.0001653241,0.00005992018,0.00009108111,0.00007849214,0.000007532833,0.00007413716,0.00006821091,0.00004085316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003338998,"about_ca_system_score_gemma":0.000102659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002997231,"about_ca_topic_score_gemma":0.0001207907,"domain_scores_codex":[0.9988326,0.00009312718,0.0003956518,0.0003270661,0.00009211276,0.0002594845],"domain_scores_gemma":[0.99961,0.00001283495,0.0001277795,0.0001528765,0.00003796701,0.00005853004],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005537222,0.0000578331,0.002607608,0.0000217189,0.00005866639,0.00001046973,0.00007131117,0.00003111053,0.9956778,0.00005478533,0.0006493405,0.0007039943],"study_design_scores_gemma":[0.0003858144,0.00005971329,0.002912427,0.00002088913,0.00001174373,0.00007742883,0.00006721744,0.0001911018,0.9925126,0.00006542899,0.003476677,0.0002188971],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970781,0.001373417,0.0005335725,0.00007539737,0.0001442489,0.0003414322,0.0001662982,0.0000113753,0.000276181],"genre_scores_gemma":[0.9888972,0.0000821003,0.002428782,0.0001017703,0.00004817886,0.00006063415,0.008122798,0.00001447861,0.0002440644],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008180885,"threshold_uncertainty_score":0.674172,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120959948","doi":"10.1093/jxb/erj133","title":"Evaluation of the stress-inducible production of choline oxidase in transgenic rice as a strategy for producing the stress-protectant glycine betaine","year":2006,"lang":"en","type":"article","venue":"Journal of Experimental Botany","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":163,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute","funders":"","keywords":"Betaine; Promoter; Transgene; Glycine; Genetically modified rice; Biology; Molecular biology; Biochemistry; Chemistry; Gene; Genetically modified crops; Gene expression; Amino acid","authors":[{"name":"Jin Su","is_ca":false},{"name":"Rozina Hirji","is_ca":true},{"name":"Ling Zhang","is_ca":false},{"name":"Chengkun He","is_ca":false},{"name":"Gopalan Selvaraj","is_ca":true},{"name":"Ray Wü","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02686015637887363,"gpt":0.3039774721730235,"spread":0.2771173157941499,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007837127,0.0001007687,0.00015062,0.00003378655,0.00005994532,0.000008647866,0.0001342975,0.00006527852,0.000005746199],"category_scores_gemma":[0.0001117986,0.00005655138,0.0001027659,0.0001215223,0.00005018591,0.00001491905,0.00001437056,0.00008567025,8.236118e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004532139,"about_ca_system_score_gemma":0.0001845993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001451523,"about_ca_topic_score_gemma":0.0004492984,"domain_scores_codex":[0.9988465,0.0001282128,0.0004378717,0.0001484849,0.0003374955,0.0001014852],"domain_scores_gemma":[0.999031,0.000007069852,0.0004184348,0.0001781783,0.0003484628,0.0000168746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002405546,0.0003248585,0.0001618905,0.00001527638,0.00004714024,4.313447e-7,0.0002031692,0.003084041,0.9953908,0.00001339251,0.0001332564,0.0003852377],"study_design_scores_gemma":[0.001186682,0.0005409918,0.002553094,0.00008810718,0.00008712726,0.00004236071,0.000553922,0.0001386207,0.9945895,0.00004685186,0.0001101981,0.00006250759],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9852543,0.01346407,0.00004072689,0.0003693577,0.0001672117,0.0006350341,0.00002113502,9.673034e-7,0.0000471913],"genre_scores_gemma":[0.9991634,0.00006218996,0.0001112231,0.000008358644,0.0004731848,0.00002395059,0.00001549512,0.000008473482,0.0001336909],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01390913,"threshold_uncertainty_score":0.2306098,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1231832268","doi":"10.1007/s00299-002-0544-y","title":"Thidiazuron induces shoot organogenesis at low concentrations and somatic embryogenesis at high concentrations on leaf and petiole explants of African violet (Saintpaulia ionantha Wendl.)","year":2003,"lang":"en","type":"article","venue":"Plant Cell Reports","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Petiole (insect anatomy); Organogenesis; Explant culture; Botany; Somatic embryogenesis; Shoot; Cytokinin; Thidiazuron; Murashige and Skoog medium; Auxin; Gene; Genetics","authors":[{"name":"J. Christopher Hall","is_ca":true},{"name":"J.M.R. Victor","is_ca":false},{"name":"Praveen K. Saxena","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009000161071011308,"gpt":0.199801145276085,"spread":0.1908009842050737,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001264033,0.0002164835,0.0002395605,0.00003902466,0.0002645945,0.00002345062,0.00004997141,0.0001693252,0.00005455157],"category_scores_gemma":[0.00006960207,0.0001827356,0.00004098259,0.00006318713,0.0001037494,0.000009006931,0.00004298379,0.00004790489,0.000003903435],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003556833,"about_ca_system_score_gemma":0.0001159112,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006720777,"about_ca_topic_score_gemma":0.0003781385,"domain_scores_codex":[0.9986673,0.00009544726,0.0003846426,0.0004455278,0.0001795845,0.0002274689],"domain_scores_gemma":[0.9992256,0.00004232235,0.0002865499,0.0002504877,0.00006001142,0.0001350344],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003456692,0.00008693228,0.009554319,0.00004918978,0.00003756688,0.00008665374,0.0002362169,0.00008795924,0.9880393,0.00005742606,0.001678751,0.00005111096],"study_design_scores_gemma":[0.0002791822,0.0001304632,0.003714776,0.00004691667,0.00006942929,0.0007693446,0.0001981692,0.00001434174,0.9882756,0.00001052076,0.006264116,0.0002270725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958574,0.002682174,0.00004434673,0.00006502433,0.0002097134,0.0002826217,0.0001965045,0.00001258536,0.0006496399],"genre_scores_gemma":[0.9948637,0.00184505,0.0001483024,0.00005983744,0.00006623515,0.00002496965,0.001286937,0.00001705639,0.001687908],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005839543,"threshold_uncertainty_score":0.7451741,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2170581024","doi":"10.1104/pp.106.092932","title":"Transcript Profiling and Identification of Molecular Markers for Early Microspore Embryogenesis in<i>Brassica napus</i> ","year":2007,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":158,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute","funders":"","keywords":"Microspore; Biology; Embryogenesis; Leafy; Embryo; Gene; Complementary DNA; cDNA library; Genetics; Reference genes; Gene expression profiling; Gene expression; Cell biology; Molecular biology; Botany; Pollen","authors":[{"name":"M. R. Malik","is_ca":true},{"name":"Feng Wang","is_ca":true},{"name":"Joan M. Dirpaul","is_ca":true},{"name":"Ning Zhou","is_ca":true},{"name":"Patricia L. Polowick","is_ca":true},{"name":"A. M. R. Ferrie","is_ca":true},{"name":"Joan E. Krochko","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007159792891972894,"gpt":0.2248522973265958,"spread":0.2176925044346229,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001660654,0.00009276721,0.0001361611,0.00004086893,0.00002704156,0.000004392351,0.00006819902,0.0001424737,6.165841e-7],"category_scores_gemma":[0.00001780611,0.00008361968,0.00004305398,0.00004524944,0.00005500643,0.000003587792,0.00001171823,0.00003426063,3.721525e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004777225,"about_ca_system_score_gemma":0.0000239908,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004501598,"about_ca_topic_score_gemma":0.0001621109,"domain_scores_codex":[0.999315,0.00002256314,0.0002299359,0.0002380811,0.00003677062,0.0001576876],"domain_scores_gemma":[0.9997277,0.0000145752,0.00008689521,0.0001030887,0.00003910095,0.00002869265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003567143,0.0000313453,0.00120245,0.00005415161,0.00002971234,0.000001740522,0.00005604086,0.00002091238,0.9975113,0.0001243842,0.0001181878,0.0004930574],"study_design_scores_gemma":[0.0003702693,0.0001154301,0.01651433,0.000008995926,0.00001683823,0.00001113637,0.00003489833,0.00004121882,0.9814652,0.00004515591,0.001280437,0.00009608452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961706,0.001200667,0.002083405,0.00004235773,0.00009322277,0.000250871,0.0001294638,0.000004297785,0.00002505195],"genre_scores_gemma":[0.9981478,0.0001253383,0.0004859872,0.00005605817,0.00006065987,0.00001842655,0.000977037,0.000009041271,0.0001196591],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0160461,"threshold_uncertainty_score":0.3409911,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2145992529","doi":"10.1016/j.envpol.2006.10.014","title":"Tolerance of transgenic canola plants (Brassica napus) amended with plant growth-promoting bacteria to flooding stress at a metal-contaminated field site","year":2006,"lang":"en","type":"article","venue":"Environmental Pollution","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":154,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Canola; Brassica; Shoot; Pseudomonas putida; Biology; Agronomy; Genetically modified crops; Biomass (ecology); Horticulture; Botany; Bacteria; Transgene; Gene; Biochemistry","authors":[{"name":"Andrea J. Farwell","is_ca":true},{"name":"Susanne Vesely","is_ca":true},{"name":"Vincent P. Nero","is_ca":true},{"name":"Hilda Rodrı́guez","is_ca":true},{"name":"Kimberley McCormack","is_ca":true},{"name":"Saleh Shah","is_ca":false},{"name":"D. George Dixon","is_ca":true},{"name":"Bernard R. Glick","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.003852777980025354,"gpt":0.1752768820041566,"spread":0.1714241040241313,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003914784,0.000149201,0.0001380998,0.00002847031,0.00009778642,0.000008799638,0.00006745118,0.0001055454,0.0000236305],"category_scores_gemma":[0.000002421695,0.000126018,0.00004275651,0.00003416236,0.00003136105,0.000009903342,0.00003003187,0.00004734656,0.000006809819],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005033095,"about_ca_system_score_gemma":0.00001074291,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002872559,"about_ca_topic_score_gemma":0.002351486,"domain_scores_codex":[0.9992228,0.00003568548,0.0001758599,0.0002639078,0.0001196323,0.0001821699],"domain_scores_gemma":[0.9997447,0.000003634695,0.00008561679,0.000114148,0.000003785461,0.00004817207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002140686,0.00006984925,0.003594662,0.00001318588,0.00003707712,0.000005403138,0.0001469117,0.0002563595,0.9952022,0.000003984534,0.0002373951,0.0002189046],"study_design_scores_gemma":[0.0005460832,0.0002962526,0.02228272,0.00004183727,0.0000298009,0.0000343478,0.00003836398,0.00006163165,0.9755359,0.000001057437,0.0009660434,0.0001660012],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983349,0.0003295835,0.0003134426,0.0001009036,0.00006436188,0.0002006192,0.0005502961,0.000009088579,0.00009681149],"genre_scores_gemma":[0.9973425,0.00004192964,0.0001544038,0.00006638529,0.0001162068,0.00001400154,0.001739648,0.00001294356,0.0005119565],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01966634,"threshold_uncertainty_score":0.5138863,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1514839615","doi":"10.1023/a:1006412203197","title":"Pilot-scale culture of adventitious roots of ginseng in a bioreactor system","year":2000,"lang":"en","type":"article","venue":"Plant Cell Tissue and Organ Culture (PCTOC)","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":153,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Bioreactor; Inoculation; Callus; Dry weight; Petri dish; Biomass (ecology); Horticulture; Botany; Sucrose; Chemistry; Biology; Animal science; Food science; Agronomy; Microbiology","authors":[{"name":"Sung Mee Choi","is_ca":false},{"name":"Sung Ho Son","is_ca":false},{"name":"Seung Rho Yun","is_ca":false},{"name":"Oh Woung Kwon","is_ca":false},{"name":"J.H. Seon","is_ca":true},{"name":"Kee‐Yoeup Paek","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005206359961971544,"gpt":0.1968752140289095,"spread":0.191668854066938,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006922173,0.0002063827,0.000298973,0.00004104975,0.0000539146,0.00001358923,0.0001302692,0.0002108311,0.00004774676],"category_scores_gemma":[0.000006824671,0.0001541991,0.0000483367,0.0001247823,0.00005935955,0.000009886383,0.00002718829,0.0001103159,0.000009935697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001180025,"about_ca_system_score_gemma":0.00003714021,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003817309,"about_ca_topic_score_gemma":0.001586757,"domain_scores_codex":[0.9989997,0.0000502181,0.0003150474,0.0003085033,0.0001322431,0.0001943557],"domain_scores_gemma":[0.9995499,0.000005507279,0.0001217585,0.000185736,0.00005696017,0.00008011636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000106193,0.0001331817,0.001170895,0.0002718221,0.00002623247,0.00002002093,0.0009417753,0.00001637492,0.9905526,0.00002856097,0.006241513,0.0004907987],"study_design_scores_gemma":[0.0007986799,0.0004604171,0.001324175,0.0001590352,0.00004670129,0.0001375639,0.0004135062,0.0000123591,0.90468,0.000004023135,0.09174806,0.0002155087],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9841844,0.009966701,0.00002963925,0.00002921433,0.0001159855,0.0003352275,0.0004036987,0.00001769717,0.004917372],"genre_scores_gemma":[0.9910048,0.001633095,0.0002396767,0.00002820706,0.0002010856,0.000009192753,0.001030487,0.00001653753,0.005836967],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08587266,"threshold_uncertainty_score":0.6288058,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2065565961","doi":"10.1371/journal.pone.0076802","title":"Inhibition of Phenylpropanoid Biosynthesis in Artemisia annua L.: A Novel Approach to Reduce Oxidative Browning in Plant Tissue Culture","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Browning; Phenylpropanoid; Artemisia annua; Phenylalanine ammonia-lyase; Tissue culture; Biochemistry; Oxidative phosphorylation; Chemistry; Food science; Biology; Biosynthesis; Botany; Phenylalanine; Enzyme; Artemisinin; Amino acid","authors":[{"name":"Andrew Maxwell Phineas Jones","is_ca":true},{"name":"Praveen K. Saxena","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0276389382275868,"gpt":0.2192904444134702,"spread":0.1916515061858834,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008048966,0.0001231824,0.0001912771,0.00007372069,0.00002207436,0.00001299098,0.00007909838,0.0001626517,0.000006583007],"category_scores_gemma":[0.00006795674,0.0001041032,0.00001943734,0.0001614538,0.00002986786,0.0000117377,0.00003664054,0.00008288417,0.00001036825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002073455,"about_ca_system_score_gemma":0.00002981713,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001970122,"about_ca_topic_score_gemma":0.0001534957,"domain_scores_codex":[0.9991794,0.0000364929,0.0002185779,0.0002802119,0.0001236792,0.0001616234],"domain_scores_gemma":[0.999682,0.000005177048,0.00007036795,0.0001204946,0.00007198346,0.00004994473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003890134,0.0009029974,0.0001934304,0.00005866867,0.00003005728,9.778929e-7,0.001102239,0.00004935762,0.9967685,0.00002835235,0.0006277866,0.0001987724],"study_design_scores_gemma":[0.0003264683,0.00010843,0.001126757,0.0001759576,0.00001434802,0.000004631443,0.0003271959,0.0001113903,0.9973762,0.000007397993,0.0002769663,0.0001442701],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973412,0.0003940636,0.0004685332,0.0001669458,0.000008604994,0.0005084838,0.00005588926,0.000006617729,0.001049649],"genre_scores_gemma":[0.9920626,0.00006807046,0.006594589,0.00007249913,0.0001050477,0.0001107574,0.0004272993,0.00001111768,0.0005480073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006126056,"threshold_uncertainty_score":0.4245205,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2067486567","doi":"10.3389/fpls.2014.00322","title":"Agrobacterium tumefaciens responses to plant-derived signaling molecules","year":2014,"lang":"en","type":"review","venue":"Frontiers in Plant Science","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Agrobacterium; Agrobacterium tumefaciens; Ti plasmid; Biology; Virulence; Plasmid; Gene; Transformation (genetics); Genetics","authors":[{"name":"Sujatha Subramoni","is_ca":true},{"name":"Naeem Nathoo","is_ca":true},{"name":"Е.А. Климов","is_ca":true},{"name":"Ze‐Chun Yuan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0216270217805775,"gpt":0.27526415697377,"spread":0.2536371351931925,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006128012,0.0003635226,0.0007333671,0.0003803246,0.0001914927,0.0001111311,0.0008123306,0.0002899383,0.00000244087],"category_scores_gemma":[0.0002312912,0.000282464,0.0001338286,0.0004383523,0.0002261106,0.00001044351,0.0001828994,0.0001789734,0.00002077378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007745817,"about_ca_system_score_gemma":0.0006393931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002200962,"about_ca_topic_score_gemma":0.0000593303,"domain_scores_codex":[0.9977815,0.0001494366,0.0004155688,0.0008429556,0.0002885895,0.0005219972],"domain_scores_gemma":[0.999158,0.00002072515,0.0001832628,0.0003926226,0.00004973612,0.0001956442],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002304885,0.0001124226,0.0002442791,0.003034656,0.0001510588,0.0002318481,0.0004993347,0.000254217,0.6424664,0.00007874866,0.1189917,0.2337049],"study_design_scores_gemma":[0.00008473192,0.00009312938,0.000010394,0.00138622,0.00004741134,0.0001726605,0.00002472788,0.0000393991,0.01484213,0.00000266332,0.9828585,0.0004380053],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003835635,0.9871742,0.005619978,0.00003392049,0.001704939,0.000583323,0.0008751435,0.00002249473,0.0001503393],"genre_scores_gemma":[0.0003603506,0.9903741,0.006067785,0.0001586146,0.0003633396,0.00006165846,0.001627529,0.00002925167,0.0009573362],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8638668,"threshold_uncertainty_score":0.9999627,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1979555560","doi":"10.1016/j.plaphy.2005.05.010","title":"Tolerance of transgenic canola expressing 1-aminocyclopropane-1-carboxylic acid deaminase to growth inhibition by nickel","year":2005,"lang":"en","type":"article","venue":"Plant Physiology and Biochemistry","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":144,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Canola; Cauliflower mosaic virus; Genetically modified crops; Transgene; Biology; Phytoremediation; Glufosinate; Bacteria; Botany; Horticulture; Biochemistry; Gene; Agronomy; Genetics; Soil water","authors":[{"name":"Jennifer C. Stearns","is_ca":true},{"name":"Saleh Shah","is_ca":false},{"name":"Bruce M. Greenberg","is_ca":true},{"name":"D. George Dixon","is_ca":true},{"name":"Bernard R. Glick","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005785068374774298,"gpt":0.2043482645525953,"spread":0.198563196177821,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004599068,0.000174895,0.0001812026,0.00001840501,0.00008089118,0.000007394995,0.00008874974,0.0002432269,0.000008165478],"category_scores_gemma":[0.00001632329,0.0001524118,0.00004608463,0.00004781414,0.00009343851,0.000006554571,0.00003661627,0.0000854414,0.000002642136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009851849,"about_ca_system_score_gemma":0.00004416633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002654013,"about_ca_topic_score_gemma":0.00003511195,"domain_scores_codex":[0.9991434,0.00002633537,0.0001956123,0.0003684166,0.0000661297,0.0002001076],"domain_scores_gemma":[0.9996338,0.000006916234,0.00007623755,0.0001508966,0.00004398508,0.00008809745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001547592,0.00006215381,0.00009631194,0.00007504576,0.00002633933,0.000001421746,0.00005661348,0.00001052536,0.9944857,0.00000413973,0.004281297,0.0007456394],"study_design_scores_gemma":[0.000359179,0.00009177119,0.0003048117,0.00004081355,0.0000200478,0.00005973937,0.00002242373,0.00002281273,0.9950874,0.00000422228,0.003787569,0.000199232],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957644,0.003317003,0.00009952345,0.0001913598,0.00003801529,0.0000969197,0.0003300803,0.00001076812,0.0001519536],"genre_scores_gemma":[0.9966313,0.0004224089,0.0002497084,0.0002535913,0.0002856756,0.00001947321,0.001681247,0.000009786479,0.0004468398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002894594,"threshold_uncertainty_score":0.6215174,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2073223053","doi":"10.1093/treephys/25.10.1273","title":"Overexpression of mtlD gene in transgenic Populus tomentosa improves salt tolerance through accumulation of mannitol","year":2005,"lang":"en","type":"article","venue":"Tree Physiology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Forest Service; National Science Foundation","keywords":"Mannitol; Kanamycin; Genetically modified crops; Murashige and Skoog medium; Transgene; Biology; Botany; Transformation (genetics); Wild type; Populus euphratica; Horticulture; Chemistry; Biochemistry; Gene; Explant culture; In vitro","authors":[{"name":"Ling Hu","is_ca":false},{"name":"Hai Lu","is_ca":false},{"name":"Qing Liu","is_ca":false},{"name":"Xiao Chen","is_ca":false},{"name":"Xiangning Jiang","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02755714355033919,"gpt":0.3063477757018608,"spread":0.2787906321515216,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003633689,0.0001039209,0.0001910225,0.00002600832,0.00001832194,0.000001460579,0.0000999679,0.0001485234,0.0000102664],"category_scores_gemma":[0.000007532297,0.00008568564,0.00005956571,0.00005837425,0.00004456216,0.00001009205,0.00002338879,0.0000463521,0.000001886402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000844808,"about_ca_system_score_gemma":0.00002583784,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001331624,"about_ca_topic_score_gemma":0.0005404325,"domain_scores_codex":[0.9992794,0.00004684189,0.0002779481,0.0002053497,0.00005949731,0.0001309467],"domain_scores_gemma":[0.9996342,0.000006336159,0.0001304207,0.0001763873,0.00003556548,0.00001708422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002084276,0.00009941221,0.0002966797,0.00003002833,0.00001704141,1.45822e-7,0.0001857778,0.001801959,0.9941779,0.0000423384,0.0002834137,0.00285687],"study_design_scores_gemma":[0.0006515712,0.0001669828,0.02246139,0.00002174134,0.00000833098,0.00000208367,0.00001468739,0.0003325601,0.9743091,0.0000751127,0.00186754,0.00008885022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978713,0.00140643,0.0002759091,0.00007231146,0.00005396932,0.0001374532,0.00002103195,0.000004393045,0.0001571397],"genre_scores_gemma":[0.9980876,0.0002358527,0.0008790399,0.0000623243,0.0002154682,0.00001150119,0.0003192543,0.000007726214,0.0001812617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02216471,"threshold_uncertainty_score":0.3494159,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118546048","doi":"10.1139/g01-154","title":"Identification of highly transformable wheat genotypes for mass production of fertile transgenic plants","year":2002,"lang":"en","type":"article","venue":"Genome","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":141,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false},"ca_institutions":"","funders":"","keywords":"Biology; Transformation (genetics); Callus; Genotype; Botany; Horticulture; Agronomy; Biotechnology; Genetics; Gene","authors":[{"name":"Alessandro Pellegrineschi","is_ca":false},{"name":"Luis Miguel Noguera","is_ca":false},{"name":"B. Skovmand","is_ca":false},{"name":"R. M. Brito","is_ca":false},{"name":"Luciano Velázquez","is_ca":false},{"name":"Maristela Marques Salgado","is_ca":false},{"name":"R. Hernández","is_ca":false},{"name":"Marilyn L. Warburton","is_ca":false},{"name":"David Hoisington","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01420520843564657,"gpt":0.2157427784786321,"spread":0.2015375700429856,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007294805,0.00006509986,0.00009586016,0.00002732123,0.00003974306,0.000003654818,0.00006727656,0.00007871663,0.00001285424],"category_scores_gemma":[0.00000558479,0.00005744723,0.0000554148,0.00003629355,0.00002353206,0.000005751077,0.00000236003,0.00001746652,0.000004022781],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000558279,"about_ca_system_score_gemma":0.00001203437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007475094,"about_ca_topic_score_gemma":0.00004106063,"domain_scores_codex":[0.9994775,0.00001138461,0.0002115026,0.0001464893,0.00006019821,0.00009291992],"domain_scores_gemma":[0.9997205,0.000001771534,0.00007003952,0.0001269345,0.00006229515,0.0000185185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005962196,0.00003443794,0.00001295588,0.00007296827,0.0000351216,5.349131e-8,0.0002326641,0.0004261904,0.9981592,0.00001516488,0.000387409,0.0005642437],"study_design_scores_gemma":[0.0002141921,0.0001171274,0.0002728354,0.00000465879,0.00002600088,0.000003504756,0.00002258056,0.00007664904,0.9818694,0.00002185577,0.01730431,0.00006687127],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9875653,0.004105051,0.007416716,0.0001449586,0.0001654789,0.0003274995,0.000126063,0.000005874067,0.0001430531],"genre_scores_gemma":[0.9947577,0.0007811397,0.0002685576,0.000007601112,0.0001321304,0.00002381418,0.0003490149,0.000007872526,0.003672199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0169169,"threshold_uncertainty_score":0.234263,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2048515002","doi":"10.1079/ivp2001262","title":"Maturation of somatic embryos in conifers: Morphogenesis, physiology, biochemistry, and molecular biology","year":2002,"lang":"en","type":"article","venue":"In Vitro Cellular & Developmental Biology - Plant","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":138,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Somatic embryogenesis; Somatic cell; Biology; Embryo; Abscisic acid; Cell biology; Morphogenesis; Botany; Embryogenesis; Genetics; Gene","authors":[{"name":"Claudio Stasolla","is_ca":true},{"name":"Lisheng Kong","is_ca":true},{"name":"Edward C. Yeung","is_ca":true},{"name":"Trevor A. Thorpe","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009120141071934242,"gpt":0.2129127868565597,"spread":0.2037926457846255,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001292937,0.0002322101,0.0003179571,0.0001100425,0.00003953588,0.00000680532,0.0001508475,0.0004124749,0.00002263482],"category_scores_gemma":[0.00003671092,0.0002068075,0.00004309744,0.0001100019,0.0001954918,0.000006108435,0.00009302712,0.0001112243,0.000007335389],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003734314,"about_ca_system_score_gemma":0.00005375224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001529731,"about_ca_topic_score_gemma":0.0001303363,"domain_scores_codex":[0.9986644,0.0001191362,0.0004229185,0.0004528679,0.00004841905,0.0002922683],"domain_scores_gemma":[0.9996302,0.00001914232,0.0001298844,0.0001451309,0.00002419415,0.00005146272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001082241,0.00008925718,0.003286738,0.00003911405,0.00004586655,0.0000194691,0.00009652006,0.000006462026,0.9956091,0.00004715391,0.0001285099,0.0005235673],"study_design_scores_gemma":[0.0007410462,0.00007794532,0.001096525,0.00002579062,0.000009996185,0.0001037884,0.00009276092,0.0002191336,0.9960506,0.0000709415,0.001265198,0.000246267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921943,0.006919711,0.0001448004,0.0001163273,0.0001044544,0.0002316841,0.0001497296,0.000008390533,0.0001306227],"genre_scores_gemma":[0.9939383,0.0005938851,0.001549919,0.0001425685,0.00004366313,0.0000367654,0.003612639,0.00001252713,0.00006971653],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006325826,"threshold_uncertainty_score":0.8433363,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2000585831","doi":"10.1073/pnas.172390699","title":"Detergent extraction identifies different VirB protein subassemblies of the type IV secretion machinery in the membranes of <i>Agrobacterium</i> <i>tumefaciens</i>","year":2002,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Agrobacterium tumefaciens; Biology; Biochemistry; Molecular mass; Secretion; Mutant; Gel electrophoresis; Chromosomal translocation; Membrane protein; Secretory protein; Pilus; Membrane; Virulence; Gene; Transformation (genetics); Enzyme","authors":[{"name":"Lilian Krall","is_ca":true},{"name":"Urs Achim Wiedemann","is_ca":true},{"name":"Gabriele Unsin","is_ca":true},{"name":"Sabine Weiß","is_ca":true},{"name":"Natalie Domke","is_ca":true},{"name":"Christian Baron","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02892729768409615,"gpt":0.2659228091429268,"spread":0.2369955114588306,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004664895,0.00007399833,0.00009635578,0.00004465297,0.00009316027,0.00001234683,0.0004249342,0.00007758072,0.000004635094],"category_scores_gemma":[0.0001512478,0.00003444987,0.0000657159,0.000282197,0.000317914,0.00003087478,0.00005938199,0.00007714655,1.543949e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006956157,"about_ca_system_score_gemma":0.00001145537,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001526786,"about_ca_topic_score_gemma":0.000007482493,"domain_scores_codex":[0.999019,0.00002296462,0.0002613889,0.0001341206,0.000487926,0.0000746033],"domain_scores_gemma":[0.9994313,0.00001725379,0.0003716674,0.00001619167,0.0001551323,0.00000845968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001473596,0.00004849671,0.002403584,0.00006885688,0.000007134645,2.426825e-9,0.0001986654,0.00006970635,0.9963474,0.0004516589,0.0003204085,0.00006932535],"study_design_scores_gemma":[0.00007461329,0.00004412475,0.02654214,0.00005546755,0.00001001079,0.000007325709,0.0001219938,0.0003075649,0.972048,0.0004187514,0.0003285468,0.00004142576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976332,0.0005806502,0.00000114,0.001182755,0.00003881106,0.0001990562,0.00001139404,0.000001368761,0.0003516439],"genre_scores_gemma":[0.9993517,0.0002000028,0.0000299892,0.00006071123,0.00005424544,0.000008669844,0.00000139281,0.000002038938,0.0002911947],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02429939,"threshold_uncertainty_score":0.1404825,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159194056","doi":"10.1104/pp.126.1.317","title":"Functional Characterization and Subcellular Localization of Poplar (<i>Populus trichocarpa</i> × <i>Populus deltoides</i>) Cinnamate 4-Hydroxylase","year":2001,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Populus trichocarpa; Salicaceae; Botany; Biology; Subcellular localization; Chemistry; Biochemistry; Woody plant; Gene; Genome","authors":[{"name":"Dae‐Kyun Ro","is_ca":false},{"name":"Nancy Mah","is_ca":false},{"name":"Brian E. Ellis","is_ca":true},{"name":"Carl J. Douglas","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009278835853656742,"gpt":0.1979618357660934,"spread":0.1886829999124366,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008339199,0.000164327,0.0002074872,0.00005724711,0.0001063934,0.000009760692,0.00007132812,0.0002004563,0.00001838234],"category_scores_gemma":[0.00002569172,0.0001439071,0.00004599201,0.0001076742,0.00006684368,0.0000123731,0.00004347957,0.00006079817,0.000008003552],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009403649,"about_ca_system_score_gemma":0.00003881318,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008625245,"about_ca_topic_score_gemma":0.000118771,"domain_scores_codex":[0.9990503,0.00008074129,0.0002674675,0.0003197264,0.0000938757,0.0001879476],"domain_scores_gemma":[0.9995326,0.000009082769,0.0001538981,0.000163342,0.00007820571,0.00006286107],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003045297,0.00006079191,0.002439161,0.00002937343,0.00004028583,0.000006062243,0.00002873384,0.0009110709,0.9941933,0.0001111582,0.00115891,0.0007166209],"study_design_scores_gemma":[0.001226566,0.0003660671,0.0100633,0.00002601416,0.00007093399,0.0003419063,0.00002152419,0.00725985,0.9022928,0.0001181756,0.07785311,0.000359682],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9721733,0.001100769,0.02598039,0.00009918947,0.0002620695,0.0001561948,0.0001597248,0.00001788505,0.00005043632],"genre_scores_gemma":[0.9834672,0.001916005,0.00004868762,0.0002809301,0.0003494097,0.00001472869,0.01336997,0.0000153659,0.0005377194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09190043,"threshold_uncertainty_score":0.5868362,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2022142744","doi":"10.1074/jbc.m203051200","title":"Purification and Characterization of Norcoclaurine Synthase","year":2002,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Chemistry; Benzylisoquinoline; Enzyme kinetics; Kinetics; Size-exclusion chromatography; Stereochemistry; Divalent; Cooperativity; Dopamine; Chromatography; Enzyme; Biosynthesis; Biochemistry; Organic chemistry; Active site; Biology","authors":[{"name":"Nailish Samanani","is_ca":true},{"name":"Peter J. Facchini","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01911947244933498,"gpt":0.2224360471633036,"spread":0.2033165747139687,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007054056,0.00005807752,0.0001029287,0.000008439592,0.0000194935,0.000005430994,0.00005967913,0.0001277522,0.00005021479],"category_scores_gemma":[0.00006409024,0.00003900978,0.00003888388,0.00002778512,0.00004938074,0.000003696301,0.00001452988,0.00005212335,6.636745e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003829629,"about_ca_system_score_gemma":0.000007746945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":5.61023e-7,"about_ca_topic_score_gemma":2.666017e-7,"domain_scores_codex":[0.9995972,0.00001465116,0.0002061633,0.00007835864,0.00005113558,0.00005252313],"domain_scores_gemma":[0.9995917,0.00000485222,0.0002153306,0.00006047434,0.00008596924,0.00004169462],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002686865,0.00005245276,0.0009998342,0.00001515444,0.0000150873,0.000002353526,0.00001031935,9.889708e-7,0.997192,0.000003678136,0.0002180196,0.001463214],"study_design_scores_gemma":[0.00018155,0.0001172962,0.002462138,0.0000117506,0.000009242825,0.0001542742,0.000008132247,0.0000207525,0.9855272,0.000006242725,0.01145156,0.00004988889],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979618,0.001331333,0.0002709414,0.0001972123,0.0000280614,0.00002360493,0.00001042705,0.000001577516,0.0001750216],"genre_scores_gemma":[0.9974769,0.001708948,0.0001376546,0.00002683325,0.0002756947,7.648537e-7,0.00006913109,0.000002417651,0.0003016642],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01166486,"threshold_uncertainty_score":0.1590773,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2114965391","doi":"10.1099/mic.0.2007/010462-0","title":"The VirB5 protein localizes to the T-pilus tips in Agrobacterium tumefaciens","year":2007,"lang":"en","type":"article","venue":"Microbiology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University; Ontario Innovation Trust","keywords":"Pilus; Agrobacterium tumefaciens; Secretion; Biology; Agrobacterium; Cell wall; Cell biology; Virulence; Microbiology; Biochemistry; Transformation (genetics); Gene","authors":[{"name":"Khaled A. Aly","is_ca":true},{"name":"Christian Baron","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.005365416602503557,"gpt":0.2178525632280252,"spread":0.2124871466255216,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003742402,0.0001033895,0.00008015338,0.00001967475,0.0001524619,0.00001862216,0.0002313431,0.0001448495,0.000004628178],"category_scores_gemma":[0.00004515659,0.00005318228,0.00003532683,0.0000835321,0.00009915503,0.00000133542,0.00008523506,0.000088705,0.0000553439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001592205,"about_ca_system_score_gemma":0.00003242907,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009145354,"about_ca_topic_score_gemma":0.01346384,"domain_scores_codex":[0.9992328,0.00007434847,0.0001633051,0.0002120235,0.00002171024,0.0002957785],"domain_scores_gemma":[0.9996628,0.00001305231,0.00003634885,0.0002186874,0.00003537127,0.00003373211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006159602,0.00001296369,0.00011032,0.000001530244,0.000009856706,0.000005005819,0.0000937031,0.00001741983,0.9868917,0.0001045992,0.01095755,0.001733728],"study_design_scores_gemma":[0.00008758737,0.0000657454,0.0003089461,0.000002754624,0.000001610473,0.00007922279,0.00003437149,0.000001233848,0.4502504,0.000004725513,0.5491068,0.00005666726],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930506,0.001625378,0.001364574,0.00296866,0.0002668828,0.0003718364,0.00002280193,0.000007693858,0.0003216276],"genre_scores_gemma":[0.9937486,0.00004655757,0.0001098052,0.0009081019,0.0002927144,0.00002500273,0.0002084087,0.000008330993,0.004652502],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5381492,"threshold_uncertainty_score":0.7513139,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2122271185","doi":"10.1186/1471-2164-11-69","title":"Transcriptome analysis reveals absence of unintended effects in drought-tolerant transgenic plants overexpressing the transcription factor ABF3","year":2010,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Canadian Food Inspection Agency; McGill University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency","keywords":"Biology; Transcriptome; Transgene; Transcription factor; Genetics; DNA microarray; Genetically modified crops; RNA-Seq; Computational biology; Gene; Gene expression","authors":[{"name":"Ashraf Abdeen","is_ca":true},{"name":"Jaimie Schnell","is_ca":true},{"name":"Brian Miki","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0147184321357644,"gpt":0.241038915401429,"spread":0.2263204832656646,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001441952,0.0001546141,0.0002337008,0.00006993089,0.00006538756,0.00002084221,0.0002101661,0.0002003514,0.00001002975],"category_scores_gemma":[0.00001499402,0.0001121681,0.0001873774,0.0001434,0.00008547392,0.000007820643,0.000008370073,0.0001549073,0.000001749781],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001236939,"about_ca_system_score_gemma":0.00007197796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001402715,"about_ca_topic_score_gemma":0.007271427,"domain_scores_codex":[0.9990688,0.00008338729,0.000289057,0.0002649339,0.0001047571,0.0001890538],"domain_scores_gemma":[0.9995278,0.00001931081,0.00009479947,0.0002786299,0.00003454707,0.00004498575],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008908204,0.00004065548,0.002132647,0.00003915344,0.0001085334,0.000001132209,0.0009575101,0.001162505,0.9951314,0.00006210418,0.00003390598,0.00024136],"study_design_scores_gemma":[0.0005738061,0.00005357952,0.02299263,0.00001956516,0.0001112634,0.000008848632,0.00008990985,0.001061783,0.9732199,0.00005048091,0.001644892,0.0001733685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870033,0.0008731922,0.01145577,0.0000481161,0.0002034023,0.0002575408,0.00009354375,0.000006357029,0.00005877718],"genre_scores_gemma":[0.998482,0.00015493,0.0008067843,0.00004823834,0.0001074203,0.00001304491,0.000201614,0.00001274141,0.0001732458],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02191154,"threshold_uncertainty_score":0.4574083,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1902725144","doi":"10.1093/jexbot/51.347.1005","title":"Agrobacterium rhizogenes-mediated transformation of opium poppy, Papaver somniferum L., and California poppy, Eschscholzia californica Cham., root cultures","year":2000,"lang":"en","type":"article","venue":"Journal of Experimental Botany","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"","keywords":"Agrobacterium; Papaver; Opium Poppy; Poppy; Biology; Papaveraceae; Botany; Transformation (genetics); Alkaloid; Gene; Biochemistry","authors":[{"name":"S U Park","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006427932670401598,"gpt":0.2393712601569228,"spread":0.2329433274865212,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001529524,0.0001844215,0.0002505326,0.0000407691,0.00008612798,0.00003100246,0.0001257681,0.0001851019,0.0001427049],"category_scores_gemma":[0.00001396154,0.0001365933,0.0001316423,0.00005786839,0.00007112767,0.000030682,0.00001906487,0.0001115352,0.0000101745],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002655463,"about_ca_system_score_gemma":0.00005944305,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000366667,"about_ca_topic_score_gemma":0.00006119535,"domain_scores_codex":[0.9988855,0.00007107714,0.0005026597,0.0001539631,0.0002076186,0.0001791698],"domain_scores_gemma":[0.9994356,0.000006061854,0.0002170647,0.0001134417,0.00009027101,0.000137555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003405359,0.0001321632,0.0004883037,0.000009409518,0.0000849381,0.000008375025,0.0002684233,0.000009865335,0.996266,0.00001009552,0.001601511,0.000780371],"study_design_scores_gemma":[0.001040405,0.0004812397,0.001679692,0.00004160477,0.00003558156,0.0003889347,0.0002060345,0.00002669739,0.9428759,0.000003994578,0.05305024,0.0001696742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839804,0.01482931,0.00005409518,0.0002649188,0.0001363189,0.0001290915,0.0001361162,0.000004817571,0.000464903],"genre_scores_gemma":[0.9975042,0.001405353,0.0001803376,0.0001225628,0.0003290982,0.000003741338,0.0001365443,0.00001490934,0.0003032791],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05339011,"threshold_uncertainty_score":0.5570114,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2159011436","doi":"10.1016/s0960-9822(01)00069-0","title":"Interaction of the virulence protein VirF of Agrobacterium tumefaciens with plant homologs of the yeast Skp1 protein","year":2001,"lang":"en","type":"article","venue":"Current Biology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":126,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute","funders":"","keywords":"Agrobacterium tumefaciens; Biology; F-box protein; Cell biology; Virulence; Transformation (genetics); Gene; Genetics; Ubiquitin; Ubiquitin ligase","authors":[{"name":"Barbara Schrammeijer","is_ca":false},{"name":"Eddy Risseeuw","is_ca":true},{"name":"Werner Pansegrau","is_ca":false},{"name":"Tonny J. G. Regensburg‐Tuïnk","is_ca":false},{"name":"William L. Crosby","is_ca":true},{"name":"Paul J. J. Hooykaas","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01374833835407693,"gpt":0.2399478133082753,"spread":0.2261994749541984,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007061664,0.00009591129,0.0001310912,0.00001681033,0.00003766526,0.000002056394,0.0002270227,0.00009501413,0.000006653221],"category_scores_gemma":[0.00003252829,0.00004575792,0.00006264749,0.00008736231,0.0002592096,0.000003410583,0.00008420252,0.00008708244,8.012786e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006726495,"about_ca_system_score_gemma":0.00006978776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007217789,"about_ca_topic_score_gemma":0.0002539916,"domain_scores_codex":[0.9993677,0.0001046661,0.0001950037,0.0001641911,0.0000584335,0.0001100369],"domain_scores_gemma":[0.9993697,0.000003235475,0.0002669756,0.0002600759,0.00008408647,0.00001592291],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009849378,0.00007882883,0.004530079,0.00003262799,0.00002132458,1.84254e-7,0.00005805152,0.00001266951,0.9933923,0.0001406255,0.0001055226,0.00152926],"study_design_scores_gemma":[0.0001880817,0.000243784,0.003864017,0.0001102538,0.0000139871,0.00003982627,0.00002346554,0.00001177051,0.975781,0.00002141248,0.01963907,0.00006337817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982842,0.0005367233,0.0002339095,0.0001246196,0.0002297156,0.0003920742,0.0001207729,0.000002444169,0.00007556715],"genre_scores_gemma":[0.9995106,0.00006050534,0.00002745091,0.000009484154,0.00006779462,0.00002545635,0.00009769556,0.000004181099,0.0001967913],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01953355,"threshold_uncertainty_score":0.1865954,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2070030499","doi":"10.1007/s11240-010-9831-4","title":"Haploids and doubled haploids in Brassica spp. for genetic and genomic research","year":2010,"lang":"en","type":"article","venue":"Plant Cell Tissue and Organ Culture (PCTOC)","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":126,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Plant Biotechnology Institute","funders":"","keywords":"Microspore; Brassica; Biology; Doubled haploidy; Transformation (genetics); Ploidy; Embryo rescue; Biotechnology; Genetics; Gene; Botany; Stamen","authors":[{"name":"A. M. R. Ferrie","is_ca":true},{"name":"Christian Möllers","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01613296841469473,"gpt":0.2674691579371097,"spread":0.251336189522415,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002104721,0.0002148388,0.0002142959,0.00006601831,0.0002472902,0.0001084802,0.0001231865,0.0003851073,0.00001569047],"category_scores_gemma":[0.00004162415,0.0001679617,0.00002114648,0.00008088836,0.0001541403,0.00001067552,0.0001079771,0.0002845846,0.000006470092],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007930415,"about_ca_system_score_gemma":0.00006258793,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001586693,"about_ca_topic_score_gemma":0.004291136,"domain_scores_codex":[0.9987251,0.00004793987,0.0001980178,0.0005281134,0.0001127103,0.0003880828],"domain_scores_gemma":[0.999483,0.00002877676,0.0000468393,0.000184817,0.00007168834,0.000184823],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008554212,0.00003951316,0.003739071,0.00007982743,0.00001619686,0.00001372867,0.0005372409,0.000001119374,0.9843183,0.0001055229,0.009700962,0.00136295],"study_design_scores_gemma":[0.001077931,0.000299507,0.00502802,0.00001683131,0.0000245659,0.0001787788,0.0001281208,0.00004182111,0.6082217,0.00009138405,0.3846364,0.0002550266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9895552,0.008742005,0.00006756762,0.0003659016,0.000133708,0.0005939464,0.0001036393,0.00001278208,0.0004252175],"genre_scores_gemma":[0.9861174,0.004022302,0.002151435,0.0001168053,0.0006910181,0.00005558903,0.0005562436,0.00003302293,0.006256152],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3760967,"threshold_uncertainty_score":0.6849281,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2138258870","doi":"10.1104/pp.113.222828","title":"A Pair of Tabersonine 16-Hydroxylases Initiates the Synthesis of Vindoline in an Organ-Dependent Manner in<i>Catharanthus roseus</i>     ","year":2013,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Brock University","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Vindoline; Catharanthus roseus; Biology; Hydroxylation; Biochemistry; Gene isoform; Gene; Gene expression; Enzyme; Genetics; Vinblastine","authors":[{"name":"Sébastien Besseau","is_ca":false},{"name":"Franziska Kellner","is_ca":false},{"name":"Arnaud Lanoue","is_ca":false},{"name":"Antje M. K. Thamm","is_ca":true},{"name":"Vonny Salim","is_ca":true},{"name":"Bernd Schneider","is_ca":false},{"name":"Fernando Geu‐Flores","is_ca":false},{"name":"René Höfer","is_ca":false},{"name":"Grégory Guirimand","is_ca":false},{"name":"Anthony Guihur","is_ca":false},{"name":"Audrey Oudin","is_ca":false},{"name":"Gaëlle Glévarec","is_ca":false},{"name":"Emilien Foureau","is_ca":false},{"name":"Nicolas Papon","is_ca":false},{"name":"Marc Clastre","is_ca":false},{"name":"Nathalie Giglioli‐Guivarc’h","is_ca":false},{"name":"Benoit St‐Pierre","is_ca":false},{"name":"Danièle Werck‐Reichhart","is_ca":false},{"name":"Vincent Burlat","is_ca":false},{"name":"Vincenzo De Luca","is_ca":true},{"name":"Sarah E. O’Connor","is_ca":false},{"name":"Vincent Courdavault","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009560706987455288,"gpt":0.2168176127503323,"spread":0.207256905762877,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001246662,0.0001258353,0.0002526086,0.00004933386,0.00002165331,0.000003783682,0.0001852443,0.0001370922,0.00003894961],"category_scores_gemma":[0.00007772316,0.00008038523,0.00003857303,0.00007326399,0.00009711606,0.000008493893,0.00004839138,0.00007614476,0.000005462301],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007324078,"about_ca_system_score_gemma":0.000038649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001276971,"about_ca_topic_score_gemma":0.003752498,"domain_scores_codex":[0.999111,0.0001609628,0.0002789006,0.0002139255,0.00006150284,0.0001736852],"domain_scores_gemma":[0.9995217,0.00007515674,0.0001249941,0.0002059489,0.00004618746,0.00002602246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000133494,0.0001971703,0.002920478,0.00002877817,0.00002438149,0.000002792974,0.0001351524,0.0002879847,0.9953068,0.00002408732,0.0007038728,0.000235002],"study_design_scores_gemma":[0.0003376158,0.0001809279,0.02648523,0.00003305398,0.00001242718,0.00002079748,0.0001390508,0.0002045774,0.9720215,0.00004683634,0.0004130071,0.0001050024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985327,0.0008430086,0.000005309666,0.0001591091,0.00007030675,0.0001834124,0.0001303103,0.000004110121,0.00007169653],"genre_scores_gemma":[0.9987985,0.0003021123,0.00002508175,0.0001035959,0.0001017297,0.00005021603,0.0005341337,0.000009173603,0.00007545935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02356475,"threshold_uncertainty_score":0.3278015,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2791168693","doi":"10.21859/ijb.1339","title":"The Desirability Optimization Methodology; a Tool to Predict Two Antagonist Responses in Biotechnological Systems: Case of Biomass Growth and Hyoscyamine Content in Elicited Datura starmonium Hairy Roots","year":2018,"lang":"en","type":"article","venue":"Iranian Journal of Biotechnology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Ryerson University","keywords":"Hyoscyamine; Datura stramonium; Transformation (genetics); Datura; Jasmonic acid; Agrobacterium; Biomass (ecology); Response surface methodology; Methyl jasmonate; Botany; Biology; Solanaceae; Biotechnology; Chemistry; Chromatography; Agronomy; Biochemistry","authors":[{"name":"Ryad Amdoun","is_ca":false},{"name":"Lakhdar Khelifi","is_ca":false},{"name":"Majda Khelifi-Slaoui","is_ca":false},{"name":"Samia Amroune","is_ca":false},{"name":"Mark Asch","is_ca":false},{"name":"Corinne Assaf-Ducrocq","is_ca":false},{"name":"É. Gontier","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04912817944258654,"gpt":0.2967388942721496,"spread":0.2476107148295631,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001229259,0.0001560723,0.0003469241,0.0003244552,0.00009004815,0.0000225635,0.0002341969,0.0005627669,7.164362e-7],"category_scores_gemma":[0.001375106,0.0001015008,0.00004348655,0.0003737526,0.000567167,0.000009455723,0.0001103132,0.0002584458,2.421191e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000355509,"about_ca_system_score_gemma":0.00008257274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000444113,"about_ca_topic_score_gemma":0.001711793,"domain_scores_codex":[0.9983035,0.0004260912,0.0006897761,0.0002675787,0.00008508909,0.0002279045],"domain_scores_gemma":[0.9990996,0.00009109482,0.000317634,0.0002548338,0.0001899631,0.00004684479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001373497,0.00006810673,0.003539101,0.00002178882,0.00004226698,0.0002878279,0.00006153233,0.000102738,0.9923055,0.0001992482,0.00005055566,0.001947826],"study_design_scores_gemma":[0.001357976,0.002316795,0.003717519,0.0000730958,0.00002535349,0.005754296,0.0005791735,0.000714327,0.9845745,0.00003869383,0.0006999871,0.0001482622],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9766386,0.002650519,0.01698065,0.00318217,0.0001759664,0.0003192098,0.0000378801,0.00001156334,0.000003465759],"genre_scores_gemma":[0.9924085,0.000493335,0.006934131,0.000048391,0.00008012417,0.000006282475,0.000009556884,0.000008869587,0.00001085854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01576987,"threshold_uncertainty_score":0.4340574,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2060060678","doi":"10.1007/s11627-001-0069-z","title":"Optimized somatic embryogenesis in Pinus strobus L.","year":2001,"lang":"en","type":"article","venue":"In Vitro Cellular & Developmental Biology - Plant","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":120,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Somatic embryogenesis; Biology; Somatic cell; Embryo; Zygote; Embryogenesis; Botany; Reforestation; Embryo culture; Tissue culture; Andrology; Horticulture; Cell biology; Genetics; In vitro; Ecology; Gene","authors":[{"name":"Krystyna Klimaszewska","is_ca":true},{"name":"Yill-Sung Park","is_ca":true},{"name":"Cathy Overton","is_ca":true},{"name":"Ian Maceacheron","is_ca":true},{"name":"J. M. Bonga","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01202059230624264,"gpt":0.2177131619221267,"spread":0.2056925696158841,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001899892,0.0002334264,0.0002788768,0.000130385,0.00005325289,0.00001394926,0.0001998154,0.0003128867,0.00003436963],"category_scores_gemma":[0.00002747258,0.0002032651,0.00005496482,0.0001438654,0.00006400877,0.00000607,0.00008566289,0.0001168846,0.0000370967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007423808,"about_ca_system_score_gemma":0.0001404047,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002724442,"about_ca_topic_score_gemma":0.0008243643,"domain_scores_codex":[0.9985931,0.0001192373,0.0003893006,0.0004289524,0.00007417951,0.0003952145],"domain_scores_gemma":[0.999685,0.00001535971,0.00007537149,0.0001402406,0.00001682409,0.00006716853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002884448,0.00009593422,0.008083183,0.000008033639,0.00003759312,0.0001905255,0.00009443746,0.0001262514,0.9897012,0.000008704187,0.0002654657,0.001100232],"study_design_scores_gemma":[0.001382438,0.00006280452,0.001793644,0.00002248935,0.000008933542,0.0003236684,0.0001167601,0.0002537644,0.9788107,0.00001629807,0.01688023,0.0003282273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959116,0.002376102,0.0005558108,0.0001002011,0.000225206,0.0002599432,0.00007034417,0.0000153148,0.0004854598],"genre_scores_gemma":[0.9874948,0.0005738764,0.005779272,0.0001814449,0.0001000844,0.00006285815,0.004977235,0.00001747683,0.0008129225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01661476,"threshold_uncertainty_score":0.8288912,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2055959284","doi":"10.1007/s00299-007-0344-5","title":"Light-enhanced caffeic acid derivatives biosynthesis in hairy root cultures of Echinacea purpurea","year":2007,"lang":"en","type":"article","venue":"Plant Cell Reports","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":120,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Higher Education Commision, Pakistan; Higher Education Commission, Pakistan","keywords":"Caffeic acid; Secondary metabolism; Biology; Chlorogenic acid; Biosynthesis; Echinacea (animal); Hairy root culture; Phenylalanine ammonia-lyase; Botany; Biochemistry; Phenylalanine; Enzyme; Antioxidant; Amino acid; Agrobacterium; Transformation (genetics)","authors":[{"name":"Bilal Haider Abbasi","is_ca":false},{"name":"Chun-Long Tian","is_ca":false},{"name":"Susan J. Murch","is_ca":true},{"name":"Praveen K. Saxena","is_ca":true},{"name":"Chunzhao Liu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006642107185571937,"gpt":0.2265315808973268,"spread":0.2198894737117549,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002442097,0.0001658056,0.0002098906,0.00006721567,0.0000477288,0.000010462,0.00008315935,0.0002121048,0.000009049128],"category_scores_gemma":[0.000074312,0.0001271832,0.00006759123,0.00009481766,0.00002720838,0.000006291605,0.00003559731,0.00007645922,0.000001993266],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001425312,"about_ca_system_score_gemma":0.00005825704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001029847,"about_ca_topic_score_gemma":0.003469725,"domain_scores_codex":[0.9989022,0.00002962493,0.0003861065,0.0003213907,0.0001390204,0.0002216482],"domain_scores_gemma":[0.9994017,0.0000119873,0.0002448283,0.0002323679,0.00004751718,0.00006154567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006102595,0.00009171309,0.004151705,0.00003555437,0.00002269914,0.00021232,0.0002828864,0.00003094905,0.9922494,0.000007905576,0.002484668,0.0003691592],"study_design_scores_gemma":[0.0001166051,0.00006529661,0.003535216,0.00003691463,0.00001390693,0.000194202,0.00009722163,0.000002527594,0.9741527,0.00001498196,0.02160123,0.0001691981],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989251,0.0033215,0.0007714998,0.00007308437,0.0001805082,0.0001790093,0.00001482976,0.00001322627,0.006195323],"genre_scores_gemma":[0.9979172,0.0002075831,0.0003582721,0.00003075109,0.0001346897,0.000006694118,0.0003297519,0.00001182934,0.001003177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01911656,"threshold_uncertainty_score":0.5186381,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}