{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":1161,"total_is_capped":false,"direct_labels_cover":2,"predictions_cover":1161,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"7a2043bdfe3d","filters":{"topic":"SARS-CoV-2 detection and testing"}},"results":[{"id":"W3012991084","doi":"10.1021/acsnano.0c02624","title":"Diagnosing COVID-19: The Disease and Tools for Detection","year":2020,"lang":"en","type":"review","venue":"ACS Nano","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":1840,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children; Sunnybrook Health Science Centre; Public Health Ontario; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Outbreak; 2019-20 coronavirus outbreak; Point of care; Point-of-care testing; Data science; Virology; Pandemic; Disease; Computer science; Computational biology; Medicine; Biology; Infectious disease (medical specialty); Pathology","authors":[{"name":"Buddhisha Udugama","is_ca":true},{"name":"Pranav Kadhiresan","is_ca":true},{"name":"H Kozłowski","is_ca":true},{"name":"Ayden Malekjahani","is_ca":true},{"name":"Matthew Osborne","is_ca":true},{"name":"Vanessa Y. C. Li","is_ca":true},{"name":"Hongmin Chen","is_ca":true},{"name":"Samira Mubareka","is_ca":true},{"name":"Jonathan B. Gubbay","is_ca":true},{"name":"Warren C. W. Chan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1593864693154849,"gpt":0.3999296505230847,"spread":0.2405431812075998,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001099126,0.0009001159,0.00101498,0.002887911,0.0003043523,0.001201069,0.0009211861,0.001863096,0.002761124],"category_scores_gemma":[0.001761527,0.0003734459,0.0007799742,0.001206841,0.000633592,0.001798306,0.0007930743,0.002087084,0.001875769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009444198,"about_ca_system_score_gemma":0.001515247,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001865494,"about_ca_topic_score_gemma":0.00206927,"domain_scores_codex":[0.999522,0.00008631113,0.00005237207,0.0000857331,0.0002032538,0.00005025566],"domain_scores_gemma":[0.9992599,0.0004149146,0.00007027855,0.00001958801,0.0001988683,0.00003646121],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004293965,0.00006980896,0.0004625213,0.01413553,0.00008746365,0.0001546546,0.0000737907,0.0003525809,0.003136243,0.007954192,0.03850325,0.935027],"study_design_scores_gemma":[0.000008415984,0.0001355772,0.0007661006,0.004670007,0.0001165263,0.001076136,0.0001009337,0.0002841537,0.001780526,0.003471993,0.9875547,0.00003478701],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001702529,0.9961319,0.0005209809,0.001039585,0.0004752371,0.00001386142,0.00004498519,0.00002182709,0.001581379],"genre_scores_gemma":[0.001598031,0.9958249,0.0007082912,0.0007445682,0.0002818579,0.0000189682,0.00007090269,0.000003962513,0.0007485172],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002887911,"threshold_uncertainty_score":0.009236872,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3027829318","doi":"10.1093/cid/ciaa638","title":"Predicting Infectious Severe Acute Respiratory Syndrome Coronavirus 2 From Diagnostic Samples","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":1197,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada; University of Manitoba; Manitoba Health","funders":"","keywords":"Infectivity; Vero cell; Virology; Interquartile range; Coronavirus; Medicine; Viral culture; Viral load; Odds ratio; Confidence interval; Biology; Virus; Internal medicine; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","authors":[{"name":"Jared Bullard","is_ca":true},{"name":"Kerry Dust","is_ca":true},{"name":"Duane J. Funk","is_ca":true},{"name":"James E. Strong","is_ca":true},{"name":"David C. Alexander","is_ca":true},{"name":"Lauren Garnett","is_ca":true},{"name":"Carl Boodman","is_ca":true},{"name":"Alexander Bello","is_ca":true},{"name":"Adam Hedley","is_ca":true},{"name":"Zachary Schiffman","is_ca":true},{"name":"Kaylie Doan","is_ca":true},{"name":"Nathalie Bastien","is_ca":true},{"name":"Yan Li","is_ca":true},{"name":"Paul G Van Caeseele","is_ca":true},{"name":"Guillaume Poliquin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1147294417021971,"gpt":0.3797733882479792,"spread":0.2650439465457821,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003637649,0.0007592403,0.0004901462,0.001872228,0.0002166595,0.00115294,0.0004969153,0.0007043002,0.0007359872],"category_scores_gemma":[0.01303899,0.0003345333,0.0004040233,0.0005780207,0.0003384615,0.0005750264,0.0004566002,0.0007597557,0.0004878676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002869389,"about_ca_system_score_gemma":0.0003702131,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005743338,"about_ca_topic_score_gemma":0.000820514,"domain_scores_codex":[0.9980738,0.0006607918,0.0003173938,0.0002899654,0.0005284328,0.0001296081],"domain_scores_gemma":[0.993064,0.003683699,0.001552779,0.0002193351,0.001021795,0.0004584057],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002296975,0.00006999268,0.9938344,0.00003496527,0.0000211125,0.0001073492,0.0000486913,0.0001929549,0.00206245,0.00001545976,0.0001604707,0.003222547],"study_design_scores_gemma":[0.00004833956,0.001082078,0.9710406,0.0001056452,0.0001333795,0.003124699,0.0003805417,0.01242446,0.01054051,0.0001567526,0.0009350119,0.00002806358],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957199,0.00055606,0.002555495,0.00007711522,0.0000380559,0.00006431621,0.0003333461,0.00005270776,0.0006030289],"genre_scores_gemma":[0.994953,0.0002256327,0.003875348,0.00007426878,0.00003490635,0.00004587627,0.0006896029,0.000006399991,0.00009495101],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003637649,"threshold_uncertainty_score":0.01923794,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3038707046","doi":"10.1136/bmj.m2516","title":"Diagnostic accuracy of serological tests for covid-19: systematic review and meta-analysis","year":2020,"lang":"en","type":"review","venue":"BMJ","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":921,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; McGill University; Université de Sherbrooke; McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Serology; Meta-analysis; Medicine; Population; Publication bias; Internal medicine; Immunology; Antibody","authors":[{"name":"Mayara Lisboa Bastos","is_ca":true},{"name":"Gamuchirai Tavaziva","is_ca":true},{"name":"S.K. Abidi","is_ca":true},{"name":"Jonathon R. Campbell","is_ca":true},{"name":"Louis‐Patrick Haraoui","is_ca":true},{"name":"James C. Johnston","is_ca":true},{"name":"Zhiyi Lan","is_ca":true},{"name":"Stephanie Law","is_ca":false},{"name":"Emily MacLean","is_ca":true},{"name":"Anete Trajman","is_ca":true},{"name":"Dick Menzies","is_ca":true},{"name":"Andrea Benedetti","is_ca":true},{"name":"Faiz Ahmad Khan","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.3892093014882026,"gpt":0.5004834877638749,"spread":0.1112741862756723,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02304444,0.002705843,0.01828026,0.007689423,0.0006120895,0.003450576,0.002541519,0.002468478,0.003297803],"category_scores_gemma":[0.06368578,0.001502717,0.03488028,0.007912946,0.0009922198,0.002031709,0.00164096,0.001742175,0.0003071361],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002892558,"about_ca_system_score_gemma":0.003952497,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006490144,"about_ca_topic_score_gemma":0.01184667,"domain_scores_codex":[0.9805832,0.009639669,0.005155304,0.001974664,0.002134636,0.0005125662],"domain_scores_gemma":[0.9522126,0.03575818,0.007945504,0.001176773,0.002546597,0.0003603824],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.001571209,0.00001811185,0.006841169,0.4204507,0.56045,0.00009481375,0.00006661088,0.0004803442,0.0001515641,0.000121635,0.0006989184,0.009054924],"study_design_scores_gemma":[0.0005443695,0.0001714945,0.004813448,0.0431131,0.9493617,0.0001123769,0.00003637705,0.0002268151,0.0001193018,0.0002029618,0.001274822,0.00002327798],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004427187,0.9932221,0.0005943145,0.0002670684,0.0001463632,0.0003106906,0.0007649722,0.00002473619,0.0002424997],"genre_scores_gemma":[0.232296,0.7579769,0.003798231,0.001435492,0.0004958339,0.001893594,0.00172164,0.00004833001,0.0003339156],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.02304444,"threshold_uncertainty_score":0.1218722,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2066218616","doi":"10.1371/journal.pmed.1001306","title":"Point-of-Care Testing for Infectious Diseases: Diversity, Complexity, and Barriers in Low- And Middle-Income Countries","year":2012,"lang":"en","type":"article","venue":"PLoS Medicine","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":604,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Montreal Heart Institute; McGill University","funders":"European and Developing Countries Clinical Trials Partnership; Canadian Institutes of Health Research; Grand Challenges Canada; Fonds de Recherche du Québec - Santé; Bill and Melinda Gates Foundation","keywords":"Low and middle income countries; Point-of-care testing; Low income; Medicine; Global health; Developing country; Diversity (politics); Environmental health; Intensive care medicine; Public health; Economic growth; Immunology; Socioeconomics; Political science; Nursing; Economics","authors":[{"name":"Nitika Pant Pai","is_ca":true},{"name":"Caroline Vadnais","is_ca":true},{"name":"Claudia M. Denkinger","is_ca":true},{"name":"Nora Engel","is_ca":false},{"name":"Madhukar Pai","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06003890484079964,"gpt":0.2935005927744231,"spread":0.2334616879336234,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007472984,0.0001617274,0.0003539947,0.001054297,0.001120346,0.002558498,0.0005318992,0.0007209019,0.00162535],"category_scores_gemma":[0.014143,0.0001843469,0.0002084213,0.00121833,0.002559789,0.00187349,0.002349498,0.0007311148,0.0001074616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001204603,"about_ca_system_score_gemma":0.001892443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0101235,"about_ca_topic_score_gemma":0.009397711,"domain_scores_codex":[0.992911,0.004653673,0.0004616887,0.0003263015,0.0009094885,0.0007376727],"domain_scores_gemma":[0.9917625,0.005082818,0.00149158,0.0002471416,0.0005022525,0.0009137449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001422845,0.000128237,0.8219262,0.00100856,0.0000800774,0.001165273,0.02142189,0.0007312606,0.0009764947,0.01147128,0.004862038,0.1360864],"study_design_scores_gemma":[0.0000248185,0.000409102,0.8825934,0.002796175,0.00007903799,0.004223134,0.06415301,0.001649323,0.0005475606,0.0131279,0.03031242,0.00008425932],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9163668,0.01565737,0.003080292,0.05239487,0.0001270364,0.00008051124,0.0001637211,0.00003232719,0.01209722],"genre_scores_gemma":[0.9923074,0.00385901,0.001049735,0.002467571,0.00005321781,0.00002536154,0.00003884575,0.000003476826,0.0001953703],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0101235,"threshold_uncertainty_score":0.03952134,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3033019032","doi":"10.1021/acsnano.0c03697","title":"Toward Nanotechnology-Enabled Approaches against the COVID-19 Pandemic","year":2020,"lang":"en","type":"review","venue":"ACS Nano","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":597,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Ontario; University of Toronto","funders":"Agence Nationale de la Recherche","keywords":"Nanotechnology; Context (archaeology); Coronavirus disease 2019 (COVID-19); Pandemic; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Nanomedicine; Infectious disease (medical specialty); Biochemical engineering; Biology; Nanoparticle; Engineering; Materials science; Medicine; Disease","authors":[{"name":"Carsten Weiß","is_ca":false},{"name":"Marie Carrière","is_ca":false},{"name":"Laura Fusco","is_ca":false},{"name":"Ilaria Capua","is_ca":false},{"name":"José Ángel Regla-Nava","is_ca":false},{"name":"Matteo Pasquali","is_ca":false},{"name":"James A. Scott","is_ca":true},{"name":"Flavia Vitale","is_ca":false},{"name":"Mehmet Altay Ünal","is_ca":false},{"name":"Cecilia Mattevi","is_ca":false},{"name":"Davide Bedognetti","is_ca":false},{"name":"Arben Merkoçi","is_ca":false},{"name":"Ennio Tasciotti","is_ca":false},{"name":"Açelya Yılmazer","is_ca":false},{"name":"Yury Gogotsi","is_ca":false},{"name":"Francesco Stellacci","is_ca":false},{"name":"Lucia Gemma Delogu","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.3000884810271949,"gpt":0.3634978474131805,"spread":0.06340936638598554,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004870087,0.0007499673,0.0006017427,0.001405352,0.0002526074,0.0007582953,0.0004902121,0.001247784,0.003612811],"category_scores_gemma":[0.0004392006,0.0003078525,0.0004743313,0.0009750452,0.0003392277,0.001310779,0.0007167906,0.001732566,0.001670491],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005524973,"about_ca_system_score_gemma":0.0009274482,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008584796,"about_ca_topic_score_gemma":0.001726218,"domain_scores_codex":[0.9998652,0.00002184205,0.00001102081,0.00002062081,0.00005744831,0.0000238888],"domain_scores_gemma":[0.9998704,0.00005446714,0.00001805778,0.00000451667,0.00003915018,0.00001353262],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006463943,0.0001156466,0.0001359503,0.01837615,0.00009119229,0.0002592427,0.000125679,0.0006902679,0.01056607,0.02135674,0.03999084,0.9082276],"study_design_scores_gemma":[0.000009545872,0.00008914238,0.0002614801,0.001671451,0.00004287488,0.0003321249,0.00004825607,0.0001261635,0.001474244,0.002869811,0.9930632,0.00001174603],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000343608,0.9957104,0.0003457443,0.000484913,0.0004046643,0.00001049753,0.00002196797,0.00001441094,0.002663804],"genre_scores_gemma":[0.002407231,0.9948314,0.0004325405,0.0004018592,0.0001691545,0.00001710751,0.00003658907,0.000002745803,0.00170142],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003612811,"threshold_uncertainty_score":0.01208609,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3083653247","doi":"10.1101/2020.09.04.283077","title":"Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":431,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Centre for Disease Control; Michael Smith Health Research BC; University of British Columbia","funders":"Medical Research Council; Genome Canada; Canadian Institutes of Health Research; University of Glasgow; UK Research and Innovation; Wellcome Trust","keywords":"Nanopore sequencing; Genome; DNA sequencing; Multiplex; Computational biology; Protocol (science); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Whole genome sequencing; Coronavirus disease 2019 (COVID-19); Genomics; Biology; Computer science; Genetics; Gene; Medicine","authors":[{"name":"John R. Tyson","is_ca":true},{"name":"Phillip James","is_ca":false},{"name":"David Stoddart","is_ca":false},{"name":"Natalie Sparks","is_ca":false},{"name":"Arthur Wickenhagen","is_ca":false},{"name":"Grant Hall","is_ca":false},{"name":"Ji Hyun Choi","is_ca":true},{"name":"Hope R. Lapointe","is_ca":true},{"name":"Kimia Kamelian","is_ca":true},{"name":"Andrew D. Smith","is_ca":true},{"name":"Natalie Prystajecky","is_ca":true},{"name":"Ian Goodfellow","is_ca":false},{"name":"Sam J. Wilson","is_ca":false},{"name":"Richard Harrigan","is_ca":true},{"name":"Terrance P. Snutch","is_ca":true},{"name":"Nicholas J. Loman","is_ca":false},{"name":"Joshua Quick","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09256253001115525,"gpt":0.3219268804233078,"spread":0.2293643504121526,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005396584,0.002553266,0.001305774,0.00207498,0.001061986,0.001806583,0.002095908,0.001919047,0.01095298],"category_scores_gemma":[0.00789548,0.001931534,0.001852596,0.001042616,0.0006943402,0.001591524,0.001581532,0.005632959,0.01364667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007648803,"about_ca_system_score_gemma":0.002094597,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002433753,"about_ca_topic_score_gemma":0.005700288,"domain_scores_codex":[0.9928409,0.001539665,0.0007736475,0.001985259,0.002336198,0.0005242289],"domain_scores_gemma":[0.9963864,0.0009535702,0.0002143468,0.0009828878,0.001249111,0.0002136593],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003177511,0.0003926529,0.001469044,0.0006937828,0.0001236302,0.0003859182,0.0002757291,0.001288978,0.8925446,0.001884329,0.01523154,0.08539209],"study_design_scores_gemma":[0.0000808749,0.0004272732,0.00379053,0.0001223066,0.0001851979,0.001475232,0.00007701623,0.01047012,0.7747253,0.001520935,0.2068525,0.0002726715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04761512,0.004721335,0.8949273,0.002992586,0.004164664,0.002705691,0.01231271,0.01874786,0.01181275],"genre_scores_gemma":[0.02776502,0.001968764,0.9364705,0.001339807,0.0003065348,0.002041623,0.01348141,0.001616766,0.01500952],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01095298,"threshold_uncertainty_score":0.03664136,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3094110181","doi":"10.1016/j.watres.2020.116560","title":"Quantitative analysis of SARS-CoV-2 RNA from wastewater solids in communities with low COVID-19 incidence and prevalence","year":2020,"lang":"en","type":"article","venue":"Water Research","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":418,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo; Canadian Institute for Advanced Research; Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"RNA; Real-time polymerase chain reaction; Wastewater; Coronavirus disease 2019 (COVID-19); Biology; Medicine; Environmental science; Gene; Environmental engineering; Internal medicine","authors":[{"name":"Patrick M. D’Aoust","is_ca":true},{"name":"Élisabeth Mercier","is_ca":true},{"name":"Danika Montpetit","is_ca":true},{"name":"Jian-Jun Jia","is_ca":true},{"name":"I. V. Alexandrov","is_ca":false},{"name":"Nafisa Neault","is_ca":true},{"name":"Aiman Tariq Baig","is_ca":true},{"name":"Janice Mayne","is_ca":true},{"name":"Xu Zhang","is_ca":true},{"name":"Tommy Alain","is_ca":true},{"name":"Marc‐André Langlois","is_ca":true},{"name":"Mark R. Servos","is_ca":true},{"name":"Malcolm R. MacKenzie","is_ca":false},{"name":"Daniel Figeys","is_ca":true},{"name":"Alex MacKenzie","is_ca":true},{"name":"Tyson E. Graber","is_ca":true},{"name":"Robert Delatolla","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2384866992261644,"gpt":0.4348998997225656,"spread":0.1964132004964012,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003536951,0.0003510694,0.0002849542,0.001090129,0.000590823,0.0009334952,0.0002132679,0.0005430736,0.001549873],"category_scores_gemma":[0.001054763,0.0002456616,0.0002660382,0.000738158,0.0005765799,0.0002730646,0.0003918656,0.0003516704,0.0003508981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003407995,"about_ca_system_score_gemma":0.0003880804,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004291772,"about_ca_topic_score_gemma":0.007070812,"domain_scores_codex":[0.9991705,0.0001545905,0.00004779199,0.000211505,0.0002543851,0.0001611859],"domain_scores_gemma":[0.9994344,0.0001540731,0.0001104038,0.00002462123,0.000228373,0.00004801479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007524238,0.0001766762,0.1382575,0.0001260231,0.0000440343,0.0001072614,0.0008343155,0.0001944839,0.8537031,0.0001744706,0.0001782504,0.005451483],"study_design_scores_gemma":[0.00003737682,0.001173943,0.7458,0.00004057927,0.00009856714,0.0006771673,0.004056286,0.003305787,0.2411768,0.0003540499,0.003246806,0.00003264441],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951266,0.0001242799,0.001991851,0.00004691298,0.00001272395,0.0000350743,0.001411177,0.00002401047,0.001227463],"genre_scores_gemma":[0.9914939,0.0001061043,0.003840078,0.0001243135,0.00001920627,0.0000831852,0.002202547,0.00001887569,0.002111817],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004291772,"threshold_uncertainty_score":0.008533597,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3072711991","doi":"10.1016/j.scitotenv.2020.141750","title":"Detection of SARS-CoV-2 in raw and treated wastewater in Germany – Suitability for COVID-19 surveillance and potential transmission risks","year":2020,"lang":"en","type":"article","venue":"The Science of The Total Environment","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":416,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Global Institute for Water Security; University of Saskatchewan","funders":"Global Water Futures; Canada First Research Excellence Fund","keywords":"Wastewater; Biology; Infectivity; Virology; Coronavirus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Environmental science; Biotechnology; Virus; Environmental engineering; Medicine; Infectious disease (medical specialty)","authors":[{"name":"Sandra Westhaus","is_ca":false},{"name":"Frank‐Andreas Weber","is_ca":false},{"name":"Sabrina Schiwy","is_ca":false},{"name":"Volker Linnemann","is_ca":false},{"name":"Markus Brinkmann","is_ca":true},{"name":"Marek Widera","is_ca":false},{"name":"Carola Greve","is_ca":false},{"name":"Axel Janke","is_ca":false},{"name":"Henner Hollert","is_ca":false},{"name":"Thomas Wintgens","is_ca":false},{"name":"Sandra Ciesek","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.04746823361829195,"gpt":0.2930714171974175,"spread":0.2456031835791256,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005186217,0.0003459661,0.0002578313,0.0007829898,0.0003507976,0.0008852476,0.0002650053,0.0005719995,0.000492686],"category_scores_gemma":[0.0003973167,0.0002000291,0.0003061517,0.0006688231,0.0004235765,0.0004892055,0.0003335378,0.0001851738,0.0001563511],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001016011,"about_ca_system_score_gemma":0.0008121255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02424631,"about_ca_topic_score_gemma":0.02048905,"domain_scores_codex":[0.9995049,0.0001242735,0.00003386061,0.00009123117,0.0001398648,0.0001058438],"domain_scores_gemma":[0.9998209,0.00004320568,0.00005236036,0.00001109676,0.00005015193,0.00002230055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002650954,0.0005522,0.6022516,0.0004512481,0.0003166751,0.003125182,0.002677893,0.00933614,0.3212194,0.001424072,0.0008474179,0.05514727],"study_design_scores_gemma":[0.00003130619,0.001061897,0.9010473,0.00004906015,0.0001366331,0.001362022,0.003450008,0.007692775,0.0807116,0.0005597869,0.003840752,0.00005677492],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984217,0.0002321129,0.0004937699,0.00005546897,0.000005159536,0.000005835212,0.0001539706,0.000009438969,0.0006226058],"genre_scores_gemma":[0.9990834,0.000120049,0.000246545,0.00001612737,0.000002556555,0.000002919132,0.0001338378,0.000001735576,0.0003929473],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02424631,"threshold_uncertainty_score":0.04821032,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3161834201","doi":"10.1128/cmr.00228-20","title":"Tools and Techniques for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/COVID-19 Detection","year":2021,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":412,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Mila - Quebec Artificial Intelligence Institute; McGill University; Nova Scotia Health Authority; Dalhousie University; Concordia University","funders":"Concordia University; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Pandemic; Coronavirus disease 2019 (COVID-19); Medicine; Preparedness; Intensive care medicine; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Disease; Coronavirus; Severe acute respiratory syndrome; Public health; Virology; Infectious disease (medical specialty); Pathology","authors":[{"name":"Seyed Hamid Safiabadi Tali","is_ca":true},{"name":"Jason J. LeBlanc","is_ca":true},{"name":"Zubi Sadiq","is_ca":true},{"name":"Oyejide Damilola Oyewunmi","is_ca":true},{"name":"Carolina Camargo","is_ca":true},{"name":"Bahareh Nikpour","is_ca":true},{"name":"Narges Armanfard","is_ca":true},{"name":"Selena M. Sagan","is_ca":true},{"name":"Sana Jahanshahi‐Anbuhi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.4264317972770257,"gpt":0.5239989369034477,"spread":0.09756713962642194,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001066839,0.001236398,0.001441333,0.004605767,0.0003635866,0.001262128,0.0009987325,0.00155989,0.004830613],"category_scores_gemma":[0.001772793,0.000455721,0.001008679,0.003046734,0.0006408051,0.001897305,0.0008857614,0.002235871,0.004220134],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006411331,"about_ca_system_score_gemma":0.001356664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001459724,"about_ca_topic_score_gemma":0.001561761,"domain_scores_codex":[0.9993224,0.0001243271,0.00009211087,0.0001060738,0.0003035191,0.00005155307],"domain_scores_gemma":[0.9991357,0.0004833409,0.0001056824,0.00003411163,0.0002070245,0.00003418823],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004388245,0.00008791061,0.0001789418,0.02948415,0.00007835675,0.0001713232,0.00009649909,0.0003150182,0.004165614,0.004410748,0.01916706,0.9418005],"study_design_scores_gemma":[0.000005445033,0.0001016243,0.0005369816,0.004867809,0.00008263508,0.0008450227,0.00006453991,0.00006941179,0.001232134,0.001261603,0.9909102,0.00002262563],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000118109,0.9974604,0.0003643082,0.000267248,0.000277025,0.00001169021,0.00003482253,0.00001681137,0.00144959],"genre_scores_gemma":[0.0005953698,0.9976324,0.0007262782,0.0001732637,0.0001156081,0.000013235,0.00004575157,0.000003326652,0.0006948116],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004830613,"threshold_uncertainty_score":0.01615995,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3035912196","doi":"10.1021/acs.analchem.0c02060","title":"Molecular Diagnosis of COVID-19: Challenges and Research Needs","year":2020,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":392,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates; Alberta Health; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Computational biology; Virology; RNA; Polymerase chain reaction; Virus; Biology; Gene; Genetics","authors":[{"name":"Wei Feng","is_ca":true},{"name":"Ashley M. Newbigging","is_ca":true},{"name":"Connie Le","is_ca":true},{"name":"Bo Pang","is_ca":true},{"name":"Hanyong Peng","is_ca":true},{"name":"Yiren Cao","is_ca":true},{"name":"Jinjun Wu","is_ca":true},{"name":"Ghulam Abbas","is_ca":false},{"name":"Jin Song","is_ca":false},{"name":"Dianbing Wang","is_ca":false},{"name":"Mengmeng Cui","is_ca":false},{"name":"Jeffrey Tao","is_ca":true},{"name":"D. Lorne Tyrrell","is_ca":true},{"name":"Xian‐En Zhang","is_ca":false},{"name":"Hongquan Zhang","is_ca":true},{"name":"X. Chris Le","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1722813317201942,"gpt":0.4007258892780926,"spread":0.2284445575578984,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01760453,0.001209197,0.002321721,0.002081325,0.0007760194,0.003184263,0.002845033,0.005664309,0.003134073],"category_scores_gemma":[0.02063408,0.0007726932,0.001092972,0.0008601517,0.003381374,0.006242771,0.002086582,0.005168766,0.002725988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00189022,"about_ca_system_score_gemma":0.002769049,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002622251,"about_ca_topic_score_gemma":0.002723929,"domain_scores_codex":[0.9912061,0.003786642,0.0008547693,0.00158039,0.002018733,0.0005532838],"domain_scores_gemma":[0.9682021,0.01958038,0.001427257,0.001099426,0.00822753,0.00146342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005272882,0.000285209,0.01178246,0.008711231,0.0001595156,0.001262322,0.0007873158,0.003170601,0.03887087,0.01357207,0.0585372,0.862334],"study_design_scores_gemma":[0.0001445545,0.001912073,0.02059528,0.01191768,0.0006436575,0.02003128,0.007142266,0.02514368,0.03567392,0.1045318,0.7716835,0.0005803233],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01318655,0.7870758,0.04021737,0.1513862,0.002925825,0.0001850373,0.0005302129,0.0005458258,0.003947165],"genre_scores_gemma":[0.1141989,0.697713,0.1299091,0.0376365,0.01331969,0.000567,0.002715313,0.0002367782,0.003703667],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01760453,"threshold_uncertainty_score":0.09310275,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3119343341","doi":"10.1001/jamainternmed.2020.8876","title":"Comparison of Saliva and Nasopharyngeal Swab Nucleic Acid Amplification Testing for Detection of SARS-CoV-2","year":2021,"lang":"en","type":"review","venue":"JAMA Internal Medicine","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":328,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; McGill University Health Centre; Royal Victoria Regional Health Centre; Royal Victoria Hospital","funders":"","keywords":"Medicine; Meta-analysis; Nucleic Acid Amplification Tests; MEDLINE; Internal medicine; Virology","authors":[{"name":"Guillaume Butler‐Laporte","is_ca":true},{"name":"Alexander Lawandi","is_ca":false},{"name":"Ian Schiller","is_ca":true},{"name":"Mandy Yao","is_ca":true},{"name":"Nandini Dendukuri","is_ca":true},{"name":"Emily G. McDonald","is_ca":true},{"name":"Todd C. Lee","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2051585997789339,"gpt":0.438638101017479,"spread":0.2334795012385451,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03412677,0.001881671,0.0106745,0.005479712,0.0004678415,0.003605293,0.001778414,0.00267818,0.004721245],"category_scores_gemma":[0.142979,0.0009156294,0.02472218,0.00417345,0.001027984,0.002765917,0.001355322,0.001988433,0.0004603761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00257882,"about_ca_system_score_gemma":0.003249421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003678963,"about_ca_topic_score_gemma":0.005396241,"domain_scores_codex":[0.9511635,0.02623224,0.01214618,0.003542398,0.006280161,0.0006354519],"domain_scores_gemma":[0.8796616,0.09584712,0.0150407,0.002076061,0.006911572,0.0004629345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.01567062,0.0001230142,0.01420559,0.60018,0.3189601,0.0001427512,0.0002249915,0.000599342,0.0005240194,0.0005614308,0.001756634,0.0470514],"study_design_scores_gemma":[0.006624824,0.003418108,0.02836676,0.1532974,0.7929952,0.0004347996,0.0003341328,0.001242877,0.0009483321,0.001588606,0.01060526,0.0001437053],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01350691,0.979677,0.001384003,0.0006993354,0.0006524172,0.00123631,0.001647471,0.00002842221,0.001168082],"genre_scores_gemma":[0.5246203,0.4543868,0.008730438,0.002276928,0.001341744,0.004788788,0.002809611,0.00008010503,0.0009653094],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.03412677,"threshold_uncertainty_score":0.1804818,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3122657984","doi":"10.1128/jcm.02881-20","title":"Performance of Saliva, Oropharyngeal Swabs, and Nasal Swabs for SARS-CoV-2 Molecular Detection: a Systematic Review and Meta-analysis","year":2021,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":312,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Saliva; Coronavirus disease 2019 (COVID-19); Medicine; Meta-analysis; 2019-20 coronavirus outbreak; Economic shortage; Virology; Biology; Internal medicine; Outbreak","authors":[{"name":"Rose Lee","is_ca":false},{"name":"Joshua C. Herigon","is_ca":false},{"name":"Andrea Benedetti","is_ca":true},{"name":"Nira R. Pollock","is_ca":false},{"name":"Claudia M. Denkinger","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2084390279366921,"gpt":0.4609973498190221,"spread":0.2525583218823301,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01347098,0.002406452,0.01725144,0.00753366,0.0006766053,0.00359439,0.002307292,0.002143162,0.003269809],"category_scores_gemma":[0.04188213,0.001341679,0.03158936,0.00804767,0.0008548383,0.001976113,0.001410168,0.001497618,0.0003506679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002628092,"about_ca_system_score_gemma":0.004357143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007045201,"about_ca_topic_score_gemma":0.01566866,"domain_scores_codex":[0.9910919,0.003234312,0.003206606,0.001078853,0.001090523,0.0002978291],"domain_scores_gemma":[0.9626305,0.0294764,0.004188202,0.0007696222,0.00263774,0.0002976409],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.001396612,0.00002787791,0.005333105,0.6572704,0.317082,0.000118715,0.0001208557,0.0003586933,0.0002627427,0.0001383684,0.0008657585,0.0170248],"study_design_scores_gemma":[0.0003144947,0.0002061195,0.005529604,0.07207669,0.9186091,0.0001519195,0.00007542663,0.000146766,0.0001463382,0.0002171559,0.002493558,0.00003282187],"study_design_candidate":"meta_analysis","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00265349,0.9962597,0.0001999437,0.0001472071,0.00007246124,0.0001128757,0.0003857299,0.00001191267,0.0001567061],"genre_scores_gemma":[0.0832838,0.9128956,0.001154857,0.0008584004,0.0002100876,0.0005723387,0.0008043703,0.00002925317,0.0001913139],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01725144,"threshold_uncertainty_score":0.07124221,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3153383196","doi":"10.1016/j.scitotenv.2021.149877","title":"Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance","year":2021,"lang":"en","type":"review","venue":"The Science of The Total Environment","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":278,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph","funders":"","keywords":"Wastewater; Infection control; Virology; Medicine; Environmental science; Intensive care medicine; Environmental engineering","authors":[{"name":"Warish Ahmed","is_ca":false},{"name":"Stuart L. Simpson","is_ca":false},{"name":"Paul M. Bertsch","is_ca":false},{"name":"Kyle Bibby","is_ca":false},{"name":"Aaron Bivins","is_ca":false},{"name":"Linda L. Blackall","is_ca":false},{"name":"Sílvia Bofill-Mas","is_ca":false},{"name":"Albert Bosch","is_ca":false},{"name":"João Brandão","is_ca":false},{"name":"Phil M. Choi","is_ca":false},{"name":"Mark Ciesielski","is_ca":false},{"name":"Erica Donner","is_ca":false},{"name":"Nishita Dsouza","is_ca":false},{"name":"Andreas H. Farnleitner","is_ca":false},{"name":"Daniel Gerrity","is_ca":false},{"name":"Raúl González","is_ca":false},{"name":"John F. Griffith","is_ca":false},{"name":"Pradip Gyawali","is_ca":false},{"name":"Charles N. Haas","is_ca":false},{"name":"Kerry A. Hamilton","is_ca":false},{"name":"Hapuarachchige Chanditha Hapuarachchi","is_ca":false},{"name":"Valerie J. Harwood","is_ca":false},{"name":"Rehnuma Haque","is_ca":false},{"name":"Greg Jackson","is_ca":false},{"name":"Stuart J. Khan","is_ca":false},{"name":"Wesaal Khan","is_ca":false},{"name":"Masaaki Kitajima","is_ca":false},{"name":"Asja Korajkic","is_ca":false},{"name":"Giuseppina La Rosa","is_ca":false},{"name":"Blythe A. Layton","is_ca":false},{"name":"Erin K. Lipp","is_ca":false},{"name":"Sandra L. McLellan","is_ca":false},{"name":"Brian R. McMinn","is_ca":false},{"name":"Gertjan Medema","is_ca":false},{"name":"Suzanne Metcalfe","is_ca":false},{"name":"Wim G. Meijer","is_ca":false},{"name":"Jochen F. Mueller","is_ca":false},{"name":"Heather Murphy","is_ca":true},{"name":"Coleen C. Naughton","is_ca":false},{"name":"Rachel T. Noble","is_ca":false},{"name":"Sudhi Payyappat","is_ca":false},{"name":"Susan Petterson","is_ca":false},{"name":"Tarja Pitkänen","is_ca":false},{"name":"Verónica Beatriz Rajal","is_ca":false},{"name":"Brandon Reyneke","is_ca":false},{"name":"Fernando A. Roman","is_ca":false},{"name":"Joan B. Rose","is_ca":false},{"name":"Marta Rusiñol","is_ca":false},{"name":"Michael J. Sadowsky","is_ca":false},{"name":"Laura Sala‐Comorera","is_ca":false},{"name":"Yin Xiang Setoh","is_ca":false},{"name":"Samendra P. Sherchan","is_ca":false},{"name":"Kwanrawee Sirikanchana","is_ca":false},{"name":"Wendy Smith","is_ca":false},{"name":"Joshua A. Steele","is_ca":false},{"name":"Rosalie Sabburg","is_ca":false},{"name":"Erin M. Symonds","is_ca":false},{"name":"Phong K. Thai","is_ca":false},{"name":"Kevin V. Thomas","is_ca":false},{"name":"Josh Tynan","is_ca":false},{"name":"S. Toze","is_ca":false},{"name":"Janelle R. Thompson","is_ca":false},{"name":"Judith Chui Ching Wong","is_ca":false},{"name":"Daisuke Sano","is_ca":false},{"name":"Stefan Wuertz","is_ca":false},{"name":"Irene Xagoraraki","is_ca":false},{"name":"Qian Zhang","is_ca":false},{"name":"Amity G. Zimmer-Faust","is_ca":false},{"name":"Orin C. Shanks","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08974328134107802,"gpt":0.3275886722736538,"spread":0.2378453909325758,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01758507,0.001919879,0.001918526,0.00295781,0.000908352,0.003291903,0.001693931,0.00197699,0.001642068],"category_scores_gemma":[0.02436359,0.001382548,0.001639452,0.001483919,0.001476727,0.002213,0.001025757,0.002090279,0.003530739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001073409,"about_ca_system_score_gemma":0.00260262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001204272,"about_ca_topic_score_gemma":0.003036238,"domain_scores_codex":[0.9752191,0.01047676,0.00263698,0.002595861,0.008304303,0.0007669882],"domain_scores_gemma":[0.9807755,0.007622837,0.00334018,0.001389227,0.006689901,0.0001823317],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002523157,0.0002393047,0.01179644,0.007377311,0.0002027709,0.0007401313,0.001091171,0.003435932,0.67328,0.002418499,0.00688717,0.292279],"study_design_scores_gemma":[0.00003997576,0.001098597,0.01361858,0.001848525,0.0004160017,0.001689786,0.0008412715,0.01345057,0.8356508,0.002426801,0.1286881,0.0002310267],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"review","genre_scores_codex":[0.06977845,0.06350514,0.843809,0.003525663,0.002808631,0.002180191,0.0008810972,0.003435207,0.01007665],"genre_scores_gemma":[0.1303607,0.05274725,0.8033997,0.002150321,0.000767192,0.001720444,0.001971609,0.000934867,0.005947919],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.01758507,"threshold_uncertainty_score":0.09299982,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4290672784","doi":"10.1038/s41551-022-00919-w","title":"A lab-on-a-chip for the concurrent electrochemical detection of SARS-CoV-2 RNA and anti-SARS-CoV-2 antibodies in saliva and plasma","year":2022,"lang":"en","type":"article","venue":"Nature Biomedical Engineering","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":276,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute on Minority Health and Health Disparities; National Institute of Dental and Craniofacial Research; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute of Nursing Research; National Institute of Mental Health; National Heart, Lung, and Blood Institute; National Institute on Aging; Harvard University; Fonds de recherche du Québec – Nature et technologies; National Institute on Drug Abuse; Natural Environment Research Council; Center for AIDS Research, University of Washington; National Institutes of Health; Paul G. Allen Frontiers Group; National Cancer Institute; Ragon Institute of MGH, MIT and Harvard; Harvard University Center for AIDS Research; Hansjörg Wyss Institute for Biologically Inspired Engineering, Harvard University; Massachusetts Consortium on Pathogen Readiness","keywords":"Saliva; Antibody; Virology; RNA; Coronavirus; Virus; Immune system; Antigen; Loop-mediated isothermal amplification; Serology; Biology; Coronavirus disease 2019 (COVID-19); Medicine; Immunology; Disease; Gene; Infectious disease (medical specialty); Biochemistry","authors":[{"name":"Devora Najjar","is_ca":false},{"name":"Joshua Rainbow","is_ca":false},{"name":"Sharma T. Sanjay","is_ca":false},{"name":"Pawan Jolly","is_ca":false},{"name":"Helena de Puig","is_ca":false},{"name":"Mohamed Yafia","is_ca":false},{"name":"Nolan Durr","is_ca":false},{"name":"Hani Sallum","is_ca":false},{"name":"Galit Alter","is_ca":false},{"name":"Jonathan Z. Li","is_ca":false},{"name":"Xu G. Yu","is_ca":false},{"name":"David R. Walt","is_ca":false},{"name":"Joseph A. Paradiso","is_ca":false},{"name":"Pedro Estrela","is_ca":false},{"name":"James J. Collins","is_ca":false},{"name":"Donald E. Ingber","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01961992736108457,"gpt":0.2919738819029589,"spread":0.2723539545418743,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008041261,0.00143674,0.00129113,0.0007952633,0.0005672097,0.0009087984,0.002386315,0.001859251,0.007669952],"category_scores_gemma":[0.00102815,0.001194506,0.0009275682,0.0003403667,0.0002850172,0.0007289957,0.001184305,0.00131241,0.005135544],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004521764,"about_ca_system_score_gemma":0.0007746159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007188828,"about_ca_topic_score_gemma":0.002326553,"domain_scores_codex":[0.9983425,0.0002620192,0.0000974236,0.0005033502,0.0006208305,0.0001737095],"domain_scores_gemma":[0.9993665,0.0001926252,0.00004335627,0.0001260075,0.0001715992,0.0001000396],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001773779,0.0002677728,0.0004401877,0.0001698272,0.00009816976,0.00009969992,0.00004236899,0.0001390504,0.9757745,0.0003132505,0.00421953,0.0182583],"study_design_scores_gemma":[0.00009378113,0.0007623393,0.003575567,0.00002104873,0.00009463555,0.0009325925,0.00004579638,0.01463606,0.9591671,0.0002873194,0.02026588,0.0001178381],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.216429,0.003766256,0.7347451,0.001726704,0.002784199,0.002968116,0.005511757,0.01880039,0.01326848],"genre_scores_gemma":[0.3622931,0.00119313,0.595942,0.004073823,0.0003632482,0.004870834,0.005071383,0.0006777019,0.0255148],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.007669952,"threshold_uncertainty_score":0.02565855,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3030382634","doi":"10.3389/fchem.2020.00517","title":"Development of Point-of-Care Biosensors for COVID-19","year":2020,"lang":"en","type":"review","venue":"Frontiers in Chemistry","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":250,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Michael Smith Health Research BC","keywords":"Biosensor; Coronavirus disease 2019 (COVID-19); Nanotechnology; Point-of-care testing; Computer science; Pandemic; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Point of care; Biochemical engineering; Engineering; Medicine; Materials science; Infectious disease (medical specialty); Disease; Pathology","authors":[{"name":"Jane Ru Choi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07610239837091283,"gpt":0.3677564793554357,"spread":0.2916540809845228,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004579238,0.0007320065,0.0008218533,0.001561873,0.0001712659,0.0006833958,0.0005503849,0.001035046,0.002116199],"category_scores_gemma":[0.0005761854,0.0003168387,0.0006257843,0.001011699,0.0002357676,0.001014335,0.0004719041,0.00114244,0.001486902],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000383167,"about_ca_system_score_gemma":0.0006039229,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005200352,"about_ca_topic_score_gemma":0.0008922134,"domain_scores_codex":[0.9997585,0.00003531223,0.00002253071,0.00004476678,0.000112191,0.00002666847],"domain_scores_gemma":[0.9998201,0.00006289112,0.00003044844,0.00000513545,0.00006804174,0.00001347076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007576557,0.0001069442,0.0003137332,0.02664081,0.0001231381,0.0003038802,0.00008323396,0.00071996,0.03420668,0.005974199,0.02291126,0.9085405],"study_design_scores_gemma":[0.00001016408,0.0003079042,0.0009176328,0.001974391,0.0001513357,0.001103319,0.00007408886,0.000490929,0.01533494,0.001456046,0.9781449,0.00003431732],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0007947295,0.9944633,0.001176721,0.0003719176,0.0005066702,0.00001399519,0.00004505548,0.00002770002,0.002599919],"genre_scores_gemma":[0.00339931,0.9929193,0.001064541,0.0002901872,0.0001523537,0.00001797499,0.00007675999,0.000003431939,0.00207614],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002116199,"threshold_uncertainty_score":0.007079422,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3094078202","doi":"10.1038/s41586-020-2885-5","title":"A pooled testing strategy for identifying SARS-CoV-2 at low prevalence","year":2020,"lang":"en","type":"article","venue":"Nature","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":238,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Perimeter Institute","funders":"Division of Mathematical Sciences; African Institute for Mathematical Sciences; Government of Canada; Académie de recherche et d'enseignement supérieur; Ministry of Colleges and Universities; Rwanda Biomedical Centre; Global Affairs Canada; University of Rwanda; Carnegie Corporation of New York; International Development Research Centre; Institut Périmètre de physique théorique; Innovation, Science and Economic Development Canada","keywords":"Pooling; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Group testing; Coronavirus disease 2019 (COVID-19); Statistics; Serial dilution; Medicine; Sample size determination; Replicate; Computer science; Infectious disease (medical specialty); Mathematics; Disease; Artificial intelligence; Internal medicine; Pathology","authors":[{"name":"Léon Mutesa","is_ca":false},{"name":"Pacifique Ndishimye","is_ca":false},{"name":"Yvan Butera","is_ca":false},{"name":"Jacob Souopgui","is_ca":false},{"name":"Annette Uwineza","is_ca":false},{"name":"Robert Rutayisire","is_ca":false},{"name":"Ella Larissa Ndoricimpaye","is_ca":false},{"name":"Emile Musoni","is_ca":false},{"name":"Nadine Rujeni","is_ca":false},{"name":"Thierry Nyatanyi","is_ca":false},{"name":"Edouard Ntagwabira","is_ca":false},{"name":"Muhammed Semakula","is_ca":false},{"name":"Clarisse Musanabaganwa","is_ca":false},{"name":"Daniel Nyamwasa","is_ca":false},{"name":"Maurice Ndashimye","is_ca":false},{"name":"Eva Ujeneza","is_ca":false},{"name":"Ivan Emile Mwikarago","is_ca":false},{"name":"Claude Mambo Muvunyi","is_ca":false},{"name":"Jean Baptiste Mazarati","is_ca":false},{"name":"Sabin Nsanzimana","is_ca":false},{"name":"Neil Turok","is_ca":true},{"name":"Wilfred Ndifon","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1085417052741594,"gpt":0.3647822744848064,"spread":0.2562405692106471,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01853788,0.001659163,0.002664827,0.00383812,0.0007147279,0.001756123,0.001613546,0.001354847,0.004275644],"category_scores_gemma":[0.04157383,0.0006353723,0.003948033,0.001557511,0.0003808249,0.001183481,0.001733201,0.0005904261,0.0008981216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006169833,"about_ca_system_score_gemma":0.001939018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003613973,"about_ca_topic_score_gemma":0.004338873,"domain_scores_codex":[0.9910777,0.005157675,0.0008737183,0.001437447,0.0009429707,0.0005106541],"domain_scores_gemma":[0.9917406,0.004131204,0.0007782578,0.001012145,0.002062037,0.0002757252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.01076666,0.001209032,0.2366323,0.001600105,0.01558821,0.001415301,0.000737443,0.01199956,0.0180995,0.006114563,0.01358074,0.6822567],"study_design_scores_gemma":[0.002942945,0.02209841,0.4467174,0.002053329,0.06350913,0.007799438,0.001887724,0.3103212,0.03518711,0.05852829,0.04837658,0.0005784126],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.346821,0.008686059,0.6134109,0.002045967,0.0008259349,0.004342506,0.008967799,0.001433874,0.01346586],"genre_scores_gemma":[0.8491071,0.001247023,0.1361388,0.001809479,0.0004149154,0.002499947,0.004475525,0.0001445583,0.004162647],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01853788,"threshold_uncertainty_score":0.09803885,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3038011122","doi":"10.1093/cid/ciaa848","title":"Sensitivity of Nasopharyngeal Swabs and Saliva for the Detection of Severe Acute Respiratory Syndrome Coronavirus 2","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":229,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Toronto East General Hospital; Sinai Health System; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Saliva; Medicine; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Respiratory system; Coronavirus; 2019-20 coronavirus outbreak; Betacoronavirus; Internal medicine; Virology; Immunology; Outbreak","authors":[{"name":"Alainna Jamal","is_ca":true},{"name":"Mohammad Mozafarihashjin","is_ca":true},{"name":"Eric A. Coomes","is_ca":true},{"name":"Jeff Powis","is_ca":true},{"name":"Angel X. Li","is_ca":true},{"name":"Aimee Paterson","is_ca":true},{"name":"Sofia Anceva-Sami","is_ca":true},{"name":"Shiva Barati","is_ca":true},{"name":"Gloria Crowl","is_ca":true},{"name":"Amna Faheem","is_ca":true},{"name":"Lubna Farooqi","is_ca":true},{"name":"Saman Khan","is_ca":true},{"name":"Karren Prost","is_ca":true},{"name":"Susan M. Poutanen","is_ca":true},{"name":"Maureen Taylor","is_ca":true},{"name":"Lily Yip","is_ca":true},{"name":"Xi Zhong","is_ca":true},{"name":"Allison McGeer","is_ca":true},{"name":"Samira Mubareka","is_ca":true},{"name":"Brenda L. Coleman","is_ca":false},{"name":"Danny Chen","is_ca":false},{"name":"Nataly Farshait","is_ca":false},{"name":"Wayne L. Gold","is_ca":false},{"name":"Christopher Kandel","is_ca":false},{"name":"Kevin Katz","is_ca":false},{"name":"Robert Kozak","is_ca":false},{"name":"Tony Mazzulli","is_ca":false},{"name":"Matthew Muller","is_ca":false},{"name":"Anne Opavsky","is_ca":false},{"name":"Mario Ostrowski","is_ca":false},{"name":"Agron Plevneshi","is_ca":false},{"name":"Neil Rau","is_ca":false},{"name":"Daniel Ricciuto","is_ca":false},{"name":"David Richardson","is_ca":false},{"name":"David Rose","is_ca":false},{"name":"Valérie Sales","is_ca":false},{"name":"Sharon Walmsley","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09868722550906579,"gpt":0.3811943354920699,"spread":0.2825071099830042,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009644539,0.0004863759,0.0005047844,0.0005121087,0.0003789369,0.0006620006,0.0002768314,0.0004228558,0.0008950683],"category_scores_gemma":[0.003843891,0.0004619844,0.0002456452,0.0002657302,0.000509635,0.000217627,0.0003974249,0.000241909,0.0002592359],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001175066,"about_ca_system_score_gemma":0.0008545695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05461203,"about_ca_topic_score_gemma":0.09502789,"domain_scores_codex":[0.9989184,0.0003016031,0.0001061327,0.0001302055,0.0003498581,0.0001938281],"domain_scores_gemma":[0.9988667,0.0004365452,0.0001597025,0.00005531204,0.000316659,0.0001652043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005549277,0.00003681784,0.9893918,0.00002231548,0.00004227859,0.0001587225,0.000333364,0.00008705151,0.005417408,0.000005728155,0.0001069254,0.003842628],"study_design_scores_gemma":[0.0000217041,0.000409794,0.9959811,0.00001307033,0.00003368805,0.000438801,0.0004949239,0.0006317529,0.001685356,0.000006225937,0.0002768189,0.000006957441],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990927,0.0003115295,0.00006432369,0.00002289982,0.000006574588,0.00001470529,0.0001060017,0.00000532998,0.000376036],"genre_scores_gemma":[0.9994186,0.0001048914,0.0001393097,0.00002663338,0.000005259485,0.0000113775,0.0001743455,0.000001074184,0.0001185672],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05461203,"threshold_uncertainty_score":0.1085883,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4286462248","doi":"10.1002/14651858.cd013705.pub3","title":"Rapid, point-of-care antigen tests for diagnosis of SARS-CoV-2 infection","year":2022,"lang":"en","type":"review","venue":"Cochrane Database of Systematic Reviews","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":228,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa","funders":"Department of Health and Social Care; Agencia Nacional de Investigación y Desarrollo; National Institute for Health and Care Research; Birmingham Biomedical Research Centre; University Hospitals Birmingham NHS Foundation Trust; University of California, San Francisco; World Health Organization","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Point-of-care testing; Virology; Coronavirus disease 2019 (COVID-19); Point of care; Medicine; 2019-20 coronavirus outbreak; Antigen; Immunology; Intensive care medicine; Infectious disease (medical specialty); Disease; Outbreak; Pathology","authors":[{"name":"Jacqueline Dinnes","is_ca":false},{"name":"Pawana Sharma","is_ca":false},{"name":"Sarah Berhane","is_ca":false},{"name":"Susanna S van Wyk","is_ca":false},{"name":"Nicholas Nyaaba","is_ca":false},{"name":"Julie Domen","is_ca":false},{"name":"Melissa Taylor","is_ca":false},{"name":"Jane Cunningham","is_ca":false},{"name":"Clare Davenport","is_ca":false},{"name":"Sabine Dittrich","is_ca":false},{"name":"Devy Emperador","is_ca":false},{"name":"Lotty Hooft","is_ca":false},{"name":"Mariska Leeflang","is_ca":false},{"name":"Matthew D. F. McInnes","is_ca":true},{"name":"René Spijker","is_ca":false},{"name":"Jan Y. Verbakel","is_ca":false},{"name":"Yemisi Takwoingi","is_ca":false},{"name":"Sian Taylor‐Phillips","is_ca":false},{"name":"Jonathan J Deeks","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2687250103233871,"gpt":0.439733508712705,"spread":0.1710084983893179,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01357453,0.001113551,0.006248986,0.01560915,0.0004125639,0.002414986,0.002321291,0.002442535,0.009574114],"category_scores_gemma":[0.06861827,0.0006348233,0.003999993,0.01300786,0.0008330021,0.002889887,0.001155254,0.001007268,0.001180429],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002507793,"about_ca_system_score_gemma":0.007583953,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004692545,"about_ca_topic_score_gemma":0.01032086,"domain_scores_codex":[0.9876694,0.003385362,0.00568703,0.0008103186,0.002217733,0.000230106],"domain_scores_gemma":[0.884413,0.09133432,0.0155433,0.001308082,0.006887368,0.000513958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.0002644139,0.00001407038,0.001545509,0.8946806,0.003442271,0.0001250347,0.00009840659,0.0001019018,0.0001866998,0.0005316579,0.008032972,0.09097649],"study_design_scores_gemma":[0.0002986972,0.0002825231,0.007643588,0.8899912,0.02063353,0.0006883843,0.0001686289,0.0001226002,0.0003111294,0.0008322943,0.07896125,0.00006617435],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0008867527,0.993659,0.0002917277,0.000838372,0.0002330203,0.0003125239,0.002409377,0.00002321412,0.001346024],"genre_scores_gemma":[0.0101384,0.9838699,0.00172836,0.001480444,0.0002761782,0.0004767425,0.001708083,0.00001662264,0.0003053447],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01560915,"threshold_uncertainty_score":0.0717898,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3122502846","doi":"10.1016/j.scitotenv.2021.145319","title":"Catching a resurgence: Increase in SARS-CoV-2 viral RNA identified in wastewater 48 h before COVID-19 clinical tests and 96 h before hospitalizations","year":2021,"lang":"en","type":"article","venue":"The Science of The Total Environment","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":224,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University of Waterloo; Canadian Institute for Advanced Research; Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Wastewater; Medicine; Epidemiology; Environmental health; Public health; Virology; Disease; Internal medicine; Environmental engineering; Environmental science; Infectious disease (medical specialty); Pathology","authors":[{"name":"Patrick M. D’Aoust","is_ca":true},{"name":"Tyson E. Graber","is_ca":true},{"name":"Élisabeth Mercier","is_ca":true},{"name":"Danika Montpetit","is_ca":true},{"name":"I. V. Alexandrov","is_ca":false},{"name":"Nafisa Neault","is_ca":true},{"name":"Aiman Tariq Baig","is_ca":true},{"name":"Janice Mayne","is_ca":true},{"name":"Xu Zhang","is_ca":true},{"name":"Tommy Alain","is_ca":true},{"name":"Mark R. Servos","is_ca":true},{"name":"Nivetha Srikanthan","is_ca":true},{"name":"Malcolm R. MacKenzie","is_ca":false},{"name":"Daniel Figeys","is_ca":true},{"name":"Douglas G. Manuel","is_ca":true},{"name":"Peter Jüni","is_ca":true},{"name":"Alex MacKenzie","is_ca":true},{"name":"Robert Delatolla","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0359991341247819,"gpt":0.3295641437319685,"spread":0.2935650096071866,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002631212,0.0004919117,0.0004843834,0.0007037397,0.0006265915,0.001063208,0.000321992,0.001576787,0.003947431],"category_scores_gemma":[0.000942832,0.0002636221,0.0004678014,0.0004866206,0.0003297152,0.0005368758,0.0005133956,0.0006379557,0.001272547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005188383,"about_ca_system_score_gemma":0.000430664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004197141,"about_ca_topic_score_gemma":0.004143687,"domain_scores_codex":[0.9993814,0.00004739626,0.00004154178,0.0001727799,0.0002081346,0.0001486922],"domain_scores_gemma":[0.9992297,0.0001093419,0.0002025564,0.00004280682,0.0002703968,0.0001453091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00417633,0.0008941413,0.5867992,0.0002759106,0.0001286773,0.003008582,0.000910336,0.0005975364,0.3743196,0.0001732937,0.002948403,0.02576797],"study_design_scores_gemma":[0.0000222031,0.001717061,0.9180073,0.00003890472,0.00009067082,0.001830918,0.002565059,0.001711822,0.07082039,0.0002615879,0.002879289,0.00005491193],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958983,0.0001678148,0.0005940952,0.0002140582,0.00009402278,0.00002497524,0.001358593,0.00009455051,0.00155354],"genre_scores_gemma":[0.9957014,0.00008645276,0.0007179431,0.0001971972,0.00004450682,0.00002562157,0.001144352,0.00001255133,0.002069913],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004197141,"threshold_uncertainty_score":0.01320547,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3036717743","doi":"10.1093/cid/ciaa760","title":"Infectious Diseases Society of America Guidelines on the Diagnosis of COVID-19 (June 2020)","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":220,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Impact; Vancouver General Hospital; McMaster University","funders":"American Pediatric Society; Infectious Diseases Society of America; Pediatric Infectious Diseases Society","keywords":"Medicine; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Pandemic; Coronavirus Infections; Betacoronavirus; Virology; MEDLINE; Intensive care medicine; Infectious disease (medical specialty); Outbreak; Pathology; Disease","authors":[{"name":"Kimberly E. Hanson","is_ca":false},{"name":"Angela M. Caliendo","is_ca":false},{"name":"Cesar Andres Diaz Arias","is_ca":false},{"name":"Janet A. Englund","is_ca":false},{"name":"Mark J. Lee","is_ca":false},{"name":"Mark Loeb","is_ca":true},{"name":"Robin Patel","is_ca":false},{"name":"Abdallah El Alayli","is_ca":false},{"name":"Mohamad A. Kalot","is_ca":false},{"name":"Yngve Falck–Ytter","is_ca":false},{"name":"Valéry Lavergne","is_ca":true},{"name":"Rebecca L. Morgan","is_ca":true},{"name":"M. Hassan Murad","is_ca":false},{"name":"Shahnaz Sultan","is_ca":false},{"name":"Adarsh Bhimraj","is_ca":false},{"name":"Reem A. Mustafa","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1519142170615605,"gpt":0.4306497050257235,"spread":0.2787354879641629,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01722495,0.002024116,0.002864124,0.01296792,0.001624821,0.004628657,0.005110467,0.008500948,0.02446377],"category_scores_gemma":[0.06309266,0.00164651,0.006822662,0.006337165,0.001439609,0.003122847,0.00385712,0.008425895,0.02104649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005131864,"about_ca_system_score_gemma":0.02717931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02230693,"about_ca_topic_score_gemma":0.02618287,"domain_scores_codex":[0.9750495,0.008757871,0.008728982,0.0009140212,0.005271625,0.001278006],"domain_scores_gemma":[0.9384459,0.01255263,0.00898424,0.001232268,0.03596798,0.002816892],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001185904,0.0000615672,0.0009423294,0.008550675,0.0001401339,0.0002501214,0.0001889422,0.0002935913,0.0003185903,0.003316753,0.8770474,0.1087712],"study_design_scores_gemma":[0.0002408432,0.00007993741,0.003048205,0.03786729,0.0002851905,0.0005441347,0.0001602882,0.0002372849,0.0002174385,0.003444271,0.953815,0.00006007952],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"methods","genre_scores_codex":[0.001741717,0.4357231,0.02237521,0.2256141,0.04875154,0.01240367,0.07063533,0.002154705,0.1806007],"genre_scores_gemma":[0.01823519,0.4172212,0.1624397,0.1477185,0.0158576,0.02943652,0.1367095,0.000942628,0.07143927],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.02446377,"threshold_uncertainty_score":0.09109533,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3120038138","doi":"10.1186/s12985-021-01489-0","title":"False negative rate of COVID-19 PCR testing: a discordant testing analysis","year":2021,"lang":"en","type":"article","venue":"Virology Journal","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":218,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Calgary; Alberta Health Services; Calgary Laboratory Services; Foothills Medical Centre; Alberta Hospital Edmonton; Vancouver General Hospital; Vancouver Coastal Health; University of Alberta Hospital; University of Alberta","funders":"","keywords":"Biology; Virology; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Medicine; Infectious disease (medical specialty); Pathology; Outbreak","authors":[{"name":"Jamil N. Kanji","is_ca":true},{"name":"Nathan Zelyas","is_ca":true},{"name":"Clayton MacDonald","is_ca":true},{"name":"Kanti Pabbaraju","is_ca":true},{"name":"Muhammad Naeem Khan","is_ca":true},{"name":"Abhaya Prasad","is_ca":true},{"name":"Jia Hu","is_ca":true},{"name":"Mathew Diggle","is_ca":true},{"name":"Byron M. Berenger","is_ca":true},{"name":"Graham Tipples","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1004199230912541,"gpt":0.3505728323410183,"spread":0.2501529092497642,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03128709,0.00109888,0.0009977891,0.003715363,0.0007715332,0.002365022,0.002178579,0.001573141,0.001003288],"category_scores_gemma":[0.1275201,0.0006748777,0.001149138,0.001223014,0.002236439,0.001267103,0.001519356,0.00112882,0.000543886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00117967,"about_ca_system_score_gemma":0.0005712397,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001890461,"about_ca_topic_score_gemma":0.0009583977,"domain_scores_codex":[0.9413296,0.02323293,0.009212467,0.007335438,0.01694565,0.001944035],"domain_scores_gemma":[0.8161045,0.1145172,0.03558445,0.01322531,0.01871644,0.001852068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008456537,0.00009023136,0.9868886,0.0001015419,0.000205063,0.001418342,0.0004841328,0.000537722,0.001533355,0.0002142262,0.0004749203,0.007206108],"study_design_scores_gemma":[0.0001190714,0.002267924,0.8643676,0.0002655514,0.001184126,0.04922637,0.001386616,0.04205605,0.03270973,0.001068168,0.005186311,0.0001625364],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9838406,0.001860135,0.008466273,0.0002203838,0.0001805517,0.0002304107,0.0004645878,0.0001341005,0.004603006],"genre_scores_gemma":[0.9955192,0.00009266337,0.00364728,0.0001493793,0.00004496623,0.0000373633,0.0003193898,0.00002662652,0.0001630391],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03128709,"threshold_uncertainty_score":0.1654639,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3125585717","doi":"10.1021/jacs.0c10810","title":"Detection of SARS-CoV-2 Viral Particles Using Direct, Reagent-Free Electrochemical Sensing","year":2021,"lang":"en","type":"article","venue":"Journal of the American Chemical Society","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":208,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Sinai Health System; Sunnybrook Health Science Centre; University of Toronto","funders":"University of Toronto","keywords":"Chemistry; Reagent; Analyte; Amperometry; Aptamer; Nucleic acid; Electrode; Linker; Virus; Virology; Chromatography; Nanotechnology; Electrochemistry; Biochemistry; Molecular biology","authors":[{"name":"Hanie Yousefi","is_ca":true},{"name":"Alam Mahmud","is_ca":true},{"name":"Dingran Chang","is_ca":true},{"name":"Jagotamoy Das","is_ca":true},{"name":"Surath Gomis","is_ca":true},{"name":"Jenise B. Chen","is_ca":true},{"name":"Hansen Wang","is_ca":true},{"name":"Terek Been","is_ca":true},{"name":"Lily Yip","is_ca":true},{"name":"Eric A. Coomes","is_ca":true},{"name":"Zhijie Li","is_ca":true},{"name":"Samira Mubareka","is_ca":true},{"name":"Allison McGeer","is_ca":true},{"name":"Natasha Christie","is_ca":true},{"name":"Scott D. Gray‐Owen","is_ca":true},{"name":"Alan Cochrane","is_ca":true},{"name":"James M. Rini","is_ca":true},{"name":"Edward H. Sargent","is_ca":true},{"name":"Shana O. Kelley","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03613971324121121,"gpt":0.3059470691056771,"spread":0.2698073558644659,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006444695,0.0006415824,0.0003037401,0.0003385321,0.0001509683,0.0005928792,0.000576328,0.0008181063,0.0007797159],"category_scores_gemma":[0.0006893763,0.0003439688,0.0002349552,0.0001905917,0.0003330186,0.0005070434,0.0005296993,0.0005712525,0.0005957374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002740768,"about_ca_system_score_gemma":0.0002504796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003162659,"about_ca_topic_score_gemma":0.00100939,"domain_scores_codex":[0.9990552,0.0001592058,0.0000447178,0.0001943604,0.0004959945,0.00005057636],"domain_scores_gemma":[0.9998162,0.00006545589,0.00003517955,0.0000181494,0.00005187823,0.00001317749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002419159,0.00002578981,0.0002545565,0.00009038424,0.000007845514,0.00003361586,0.00002510445,0.00007235168,0.992942,0.0001533326,0.0001685029,0.006202472],"study_design_scores_gemma":[0.00000540632,0.0001549506,0.0007964663,0.000006678417,0.000008017579,0.0002178065,0.00002131703,0.001361912,0.9946208,0.00004448218,0.002752026,0.00001000007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7526368,0.01566293,0.2132862,0.001034143,0.0005043881,0.0004788742,0.0009273498,0.001371337,0.01409796],"genre_scores_gemma":[0.8428259,0.006181082,0.1371557,0.000772951,0.0001339008,0.0002101073,0.0006016942,0.00004390184,0.01207476],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008181063,"threshold_uncertainty_score":0.003408372,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4309183903","doi":"10.1002/14651858.cd013652.pub2","title":"Antibody tests for identification of current and past infection with SARS-CoV-2","year":2022,"lang":"en","type":"review","venue":"Cochrane Database of Systematic Reviews","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":207,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Ottawa; McGill University; McGill University Health Centre","funders":"National Institute for Health and Care Research; World Health Organization","keywords":"Medicine; Serology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Public health; Pandemic; Norwegian; Test (biology); Coronavirus disease 2019 (COVID-19); Epidemiology; Diagnostic test; Immunology; Antibody; Pediatrics; Pathology; Disease; Biology; Infectious disease (medical specialty)","authors":[{"name":"Tilly Fox","is_ca":false},{"name":"Julia Geppert","is_ca":false},{"name":"Jacqueline Dinnes","is_ca":false},{"name":"Katie Scandrett","is_ca":false},{"name":"Jacob Bigio","is_ca":true},{"name":"Giorgia Sulis","is_ca":true},{"name":"D. Hettiarachchi","is_ca":false},{"name":"Yasith Mathangasinghe","is_ca":false},{"name":"Praveen Weeratunga","is_ca":false},{"name":"Dakshitha Wickramasinghe","is_ca":false},{"name":"Hanna Bergman","is_ca":false},{"name":"Brian S Buckley","is_ca":false},{"name":"Katrin Probyn","is_ca":false},{"name":"Yanina Sguassero","is_ca":false},{"name":"Clare Davenport","is_ca":false},{"name":"Jane Cunningham","is_ca":false},{"name":"Sabine Dittrich","is_ca":false},{"name":"Devy Emperador","is_ca":false},{"name":"Lotty Hooft","is_ca":false},{"name":"Mariska Leeflang","is_ca":false},{"name":"Matthew D. F. McInnes","is_ca":true},{"name":"René Spijker","is_ca":false},{"name":"Thomas Struyf","is_ca":false},{"name":"Jan Y. Verbakel","is_ca":false},{"name":"Yemisi Takwoingi","is_ca":false},{"name":"Sian Taylor‐Phillips","is_ca":false},{"name":"Jonathan J Deeks","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2448402727836655,"gpt":0.4631546969177351,"spread":0.2183144241340696,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007172694,0.0006368567,0.002085923,0.01705448,0.0003644069,0.001957303,0.001845678,0.001977412,0.02739435],"category_scores_gemma":[0.05830771,0.0003802003,0.002445102,0.01597496,0.0006528856,0.00179404,0.001166869,0.001007949,0.005210337],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001546992,"about_ca_system_score_gemma":0.003347168,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01022212,"about_ca_topic_score_gemma":0.01419387,"domain_scores_codex":[0.9894302,0.002624349,0.004354613,0.00083928,0.00245918,0.0002925181],"domain_scores_gemma":[0.9289353,0.04345157,0.01749489,0.001327712,0.008088644,0.0007018761],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"systematic_review","study_design_scores_codex":[0.002222717,0.00007009459,0.05261537,0.3312181,0.003626776,0.0005067426,0.000509786,0.0003269543,0.0004737285,0.002288307,0.1275179,0.4786237],"study_design_scores_gemma":[0.001063035,0.000515895,0.2101751,0.4577193,0.01039318,0.002073264,0.0008439866,0.0004190563,0.0009325951,0.002620826,0.3130946,0.0001491998],"study_design_candidate":"systematic_review","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01179106,0.8361408,0.001695039,0.008526183,0.001155829,0.0008033057,0.1040371,0.0002612343,0.03558949],"genre_scores_gemma":[0.1676023,0.741221,0.00980964,0.006617505,0.000996997,0.001408051,0.06670268,0.000182635,0.005459356],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.02739435,"threshold_uncertainty_score":0.09164327,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3107122234","doi":"10.1016/j.bios.2020.112830","title":"Diagnosis of COVID-19 for controlling the pandemic: A review of the state-of-the-art","year":2020,"lang":"en","type":"review","venue":"Biosensors and Bioelectronics","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":206,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pandemic; Coronavirus disease 2019 (COVID-19); Asymptomatic; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Asymptomatic carrier; Coronavirus; Contact tracing; Intensive care medicine; Middle East respiratory syndrome; Medicine; Disease; Middle East respiratory syndrome coronavirus; 2019-20 coronavirus outbreak; Virology; Infectious disease (medical specialty); Pathology; Outbreak","authors":[{"name":"Nastaran Taleghani","is_ca":true},{"name":"Fariborz Taghipour","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08335453027542404,"gpt":0.3646686252958868,"spread":0.2813140950204627,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001243615,0.001099506,0.001813158,0.003296014,0.0003077055,0.001157412,0.001115524,0.001389328,0.004013387],"category_scores_gemma":[0.001786127,0.0004701266,0.001116535,0.002309144,0.0005781066,0.001882875,0.0006588384,0.001522432,0.001959085],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006449912,"about_ca_system_score_gemma":0.00152369,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001553091,"about_ca_topic_score_gemma":0.0016958,"domain_scores_codex":[0.9995263,0.00008214494,0.00008493423,0.00009558651,0.0001741887,0.00003687642],"domain_scores_gemma":[0.9989158,0.0006482035,0.0001139184,0.00002414832,0.0002515461,0.00004647143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007705449,0.00009057764,0.0003068942,0.03537468,0.0001295214,0.0001506904,0.00006831638,0.0003801085,0.001869024,0.003335714,0.01821009,0.9400074],"study_design_scores_gemma":[0.00001527492,0.0002318721,0.00104867,0.009990849,0.0003269846,0.001264523,0.0001123535,0.0002106698,0.001163743,0.001929697,0.9836642,0.0000413029],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00008841776,0.9987261,0.000171266,0.0002025343,0.0001504911,0.000006890189,0.00002230442,0.000007456944,0.0006244648],"genre_scores_gemma":[0.0005434038,0.9986577,0.0002634467,0.0001535919,0.0001031627,0.000008017076,0.0000341517,0.000001804438,0.0002347684],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004013387,"threshold_uncertainty_score":0.01342613,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3032656009","doi":"10.1515/cclm-2020-0722","title":"Molecular, serological, and biochemical diagnosis and monitoring of COVID-19: IFCC taskforce evaluation of the latest evidence","year":2020,"lang":"en","type":"review","venue":"Clinical Chemistry and Laboratory Medicine (CCLM)","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":198,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Pandemic; Coronavirus disease 2019 (COVID-19); Medical laboratory; Intensive care medicine; Serology; Diagnostic test; Disease; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Pathology; Infectious disease (medical specialty); Immunology; Veterinary medicine; Antibody","authors":[{"name":"Mary Kathryn Bohn","is_ca":true},{"name":"Giuseppe Lippi","is_ca":false},{"name":"Andrea R. Horvath","is_ca":false},{"name":"Sunil Sethi","is_ca":false},{"name":"David D. Koch","is_ca":false},{"name":"Maurizio Ferrari","is_ca":false},{"name":"Cheng-Bin Wang","is_ca":false},{"name":"Nicasio Mancini","is_ca":false},{"name":"Shannon Steele","is_ca":true},{"name":"Khosrow Adeli","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.3132588226611536,"gpt":0.4932304132691319,"spread":0.1799715906079783,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04896579,0.001513461,0.003310058,0.006426342,0.001246828,0.006921505,0.003358583,0.003894825,0.003320335],"category_scores_gemma":[0.06844145,0.0007421626,0.002676882,0.003509325,0.003058879,0.0051457,0.003053952,0.006777598,0.002282042],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004146507,"about_ca_system_score_gemma":0.01654291,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008933296,"about_ca_topic_score_gemma":0.00902993,"domain_scores_codex":[0.9721459,0.008377455,0.005180107,0.002070554,0.01091913,0.00130678],"domain_scores_gemma":[0.8745916,0.05273198,0.009283355,0.002815044,0.05715399,0.003424019],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"systematic_review","study_design_scores_codex":[0.0004379272,0.0001340414,0.008132747,0.02584655,0.0005750491,0.0004860179,0.0004206195,0.0004652879,0.002275008,0.006775499,0.1116503,0.8428009],"study_design_scores_gemma":[0.00005450379,0.0003938929,0.007585115,0.04207004,0.0008021879,0.001072724,0.0003671034,0.0004431467,0.002136063,0.00363867,0.9413237,0.0001128391],"study_design_candidate":"systematic_review","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001042251,0.9452398,0.003066327,0.03897065,0.003933322,0.0001523125,0.0004344635,0.0001113494,0.007049544],"genre_scores_gemma":[0.0123599,0.9471662,0.01172637,0.01882839,0.006314154,0.0002792459,0.001860362,0.00006867025,0.001396745],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.04896579,"threshold_uncertainty_score":0.258959,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3086365214","doi":"10.1093/cid/ciaa1343","title":"Infectious Diseases Society of America Guidelines on the Diagnosis of COVID-19: Serologic Testing (September 2020)","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":190,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Impact; Vancouver General Hospital; McMaster University","funders":"Centers for Disease Control and Prevention","keywords":"Coronavirus disease 2019 (COVID-19); Serology; Virology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Coronavirus; Medicine; Pandemic; Infectious disease (medical specialty); Disease; Coronavirus Infections; Betacoronavirus; Immunology; Outbreak; Antibody; Pathology","authors":[{"name":"Kimberly E. Hanson","is_ca":false},{"name":"Angela M. Caliendo","is_ca":false},{"name":"Cesar Andres Diaz Arias","is_ca":false},{"name":"Janet A. Englund","is_ca":false},{"name":"Mary K. Hayden","is_ca":false},{"name":"Mark J. Lee","is_ca":false},{"name":"Mark Loeb","is_ca":true},{"name":"Robin Patel","is_ca":false},{"name":"Osama Altayar","is_ca":false},{"name":"Abdallah El Alayli","is_ca":false},{"name":"Shahnaz Sultan","is_ca":false},{"name":"Yngve Falck–Ytter","is_ca":false},{"name":"Valéry Lavergne","is_ca":true},{"name":"Rebecca L. Morgan","is_ca":true},{"name":"M. Hassan Murad","is_ca":false},{"name":"Adarsh Bhimraj","is_ca":false},{"name":"Reem A. Mustafa","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2180116643486747,"gpt":0.4328740448482203,"spread":0.2148623804995455,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02198242,0.001881055,0.002707241,0.01184798,0.001505488,0.003883171,0.005172112,0.00668431,0.01353798],"category_scores_gemma":[0.07231859,0.001606104,0.007269203,0.006277697,0.001268514,0.002876087,0.003993042,0.006853949,0.01112942],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00519845,"about_ca_system_score_gemma":0.02645589,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02321596,"about_ca_topic_score_gemma":0.03378737,"domain_scores_codex":[0.9655428,0.01202854,0.01382224,0.0009821662,0.006443676,0.001180609],"domain_scores_gemma":[0.9138293,0.0177418,0.01338302,0.001737199,0.0508599,0.002448818],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001163949,0.00009642218,0.001881723,0.01756871,0.000273014,0.0002380231,0.0003632486,0.0004580888,0.0004747986,0.003146999,0.818359,0.1570236],"study_design_scores_gemma":[0.0003583644,0.000133539,0.005861388,0.07168876,0.0006315019,0.0006429956,0.0002895595,0.0004040679,0.0003292716,0.004465147,0.9151052,0.00009035005],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"other","genre_scores_codex":[0.003146989,0.4157524,0.03702724,0.2323742,0.0279657,0.02648898,0.07188588,0.002924519,0.1824342],"genre_scores_gemma":[0.02376898,0.3791646,0.2646142,0.1411944,0.00823533,0.04288196,0.09859427,0.0008312683,0.04071514],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.02321596,"threshold_uncertainty_score":0.1162555,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3122661585","doi":"10.1093/cid/ciab048","title":"The Infectious Diseases Society of America Guidelines on the Diagnosis of COVID-19: Molecular Diagnostic Testing (January 2021)","year":2021,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":187,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver General Hospital","funders":"Medical Research Council; Centers for Disease Control and Prevention; U.S. Department of Health and Human Services; National Institutes of Health; Shionogi; American Gastroenterological Association; American Society of Hematology; Infectious Diseases Society of America; U.S. Department of Defense; Agency for Healthcare Research and Quality; National Science Foundation; Australian Government","keywords":"Medicine; Intensive care medicine; Guideline; Diagnostic test; MEDLINE; Grading (engineering); Nucleic Acid Amplification Tests; Public health; Coronavirus disease 2019 (COVID-19); Point-of-care testing; Health care; Infectious disease (medical specialty); Disease; Pathology; Pediatrics; Virology","authors":[{"name":"Kimberly E. Hanson","is_ca":false},{"name":"Angela M. Caliendo","is_ca":false},{"name":"Cesar Andres Diaz Arias","is_ca":false},{"name":"Mary K. Hayden","is_ca":false},{"name":"Janet A. Englund","is_ca":false},{"name":"Mark J. Lee","is_ca":false},{"name":"Mark Loeb","is_ca":false},{"name":"Robin Patel","is_ca":false},{"name":"Abdallah El Alayli","is_ca":false},{"name":"Osama Altayar","is_ca":false},{"name":"Payal Patel","is_ca":false},{"name":"Yngve Falck–Ytter","is_ca":false},{"name":"Valéry Lavergne","is_ca":true},{"name":"Rebecca L. Morgan","is_ca":false},{"name":"M. Hassan Murad","is_ca":false},{"name":"Shahnaz Sultan","is_ca":false},{"name":"Adarsh Bhimraj","is_ca":false},{"name":"Reem A. Mustafa","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1074538946436187,"gpt":0.4135119280955459,"spread":0.3060580334519272,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02631212,0.002470819,0.003655554,0.01659979,0.001899654,0.005568557,0.006082496,0.009902257,0.01496345],"category_scores_gemma":[0.1002312,0.002070735,0.007872382,0.009132482,0.001918355,0.003817753,0.004674187,0.0103015,0.01455083],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006860398,"about_ca_system_score_gemma":0.03813155,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02519242,"about_ca_topic_score_gemma":0.03190444,"domain_scores_codex":[0.9577042,0.01445527,0.01557746,0.001226157,0.009452385,0.001584498],"domain_scores_gemma":[0.8741882,0.02543014,0.01991755,0.002168489,0.07426741,0.004028211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001222349,0.00008545342,0.001267796,0.01649582,0.0002316238,0.0002390232,0.000247355,0.0003731911,0.0004079238,0.003525193,0.8515261,0.1254784],"study_design_scores_gemma":[0.0002699118,0.0001025175,0.003901373,0.06901656,0.0005301245,0.0005062175,0.0002105265,0.0003456729,0.0002911965,0.004469976,0.92027,0.00008602311],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"methods","genre_scores_codex":[0.001687429,0.4608964,0.02260599,0.2898349,0.05401026,0.0140638,0.04680105,0.001815292,0.108285],"genre_scores_gemma":[0.01573143,0.4777539,0.1757632,0.1596904,0.01791096,0.03147905,0.07840747,0.0007363831,0.0425272],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.02631212,"threshold_uncertainty_score":0.1391535,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3104181482","doi":"10.3390/pr8111425","title":"Microfluidic Nano-Scale qPCR Enables Ultra-Sensitive and Quantitative Detection of SARS-CoV-2","year":2020,"lang":"en","type":"article","venue":"Processes","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":184,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"York University; New York University Abu Dhabi","keywords":"Viral load; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Detection limit; Gold standard (test); Virology; Real-time polymerase chain reaction; Coronavirus disease 2019 (COVID-19); Biology; Complementary DNA; Molecular biology; Virus; Chemistry; Chromatography; Medicine; Gene; Infectious disease (medical specialty); Genetics","authors":[{"name":"Xin Xie","is_ca":false},{"name":"Tamara Gjorgjieva","is_ca":false},{"name":"Zaynoun Attieh","is_ca":false},{"name":"Mame Massar Dieng","is_ca":false},{"name":"Marc Arnoux","is_ca":false},{"name":"Mostafa Khair","is_ca":false},{"name":"Fatima Al Jallaf","is_ca":false},{"name":"Nabil Rahiman","is_ca":false},{"name":"Christopher A. Jackson","is_ca":false},{"name":"Lobna El Messery","is_ca":false},{"name":"Khristine Pamplona","is_ca":false},{"name":"Zyrone Victoria","is_ca":false},{"name":"Mohammed Zafar","is_ca":false},{"name":"Raghib Ali","is_ca":false},{"name":"Fabio Piano","is_ca":false},{"name":"Kristin C. Gunsalus","is_ca":false},{"name":"Youssef Idaghdour","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06042124347632634,"gpt":0.3069813373916759,"spread":0.2465600939153496,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008808631,0.0004129609,0.0004237488,0.0002870305,0.0001753945,0.0004102797,0.0003999896,0.0003887863,0.000937545],"category_scores_gemma":[0.0009564133,0.0003459751,0.0003371647,0.0001192437,0.0004177299,0.0003225226,0.0004414787,0.000546239,0.0004510728],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005454126,"about_ca_system_score_gemma":0.0005255407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006500066,"about_ca_topic_score_gemma":0.001336165,"domain_scores_codex":[0.9993615,0.00009699989,0.00004293516,0.0001836069,0.0002530262,0.00006203578],"domain_scores_gemma":[0.9995275,0.0002462905,0.00007011993,0.00005003065,0.00008361165,0.00002258627],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001662459,0.00002699694,0.0003370351,0.00008992537,0.000005384732,0.00001674915,0.00002161892,0.0009269651,0.9915197,0.0003057531,0.0002824186,0.006450606],"study_design_scores_gemma":[0.00001000577,0.000132595,0.002226758,0.00001621623,0.00001435016,0.00008151052,0.00001742368,0.01613767,0.9749655,0.0002262478,0.006143929,0.00002791163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5031973,0.004383451,0.4766144,0.001211771,0.0006922962,0.0005820203,0.002099457,0.00369707,0.007522222],"genre_scores_gemma":[0.6768265,0.002274281,0.3133983,0.0007140171,0.0001778255,0.0008127236,0.0009985999,0.00009825609,0.004699346],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000937545,"threshold_uncertainty_score":0.00465852,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3120226689","doi":"10.7326/m20-6569","title":"The Sensitivity and Costs of Testing for SARS-CoV-2 Infection With Saliva Versus Nasopharyngeal Swabs","year":2021,"lang":"en","type":"review","venue":"Annals of Internal Medicine","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":182,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"McGill University Health Centre; McGill University","funders":"","keywords":"Medicine; Saliva; Personal protective equipment; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Coronavirus; 2019-20 coronavirus outbreak; Infection control; False Negative Reactions; Virology; Intensive care medicine; Emergency medicine; Internal medicine; Outbreak; Infectious disease (medical specialty); Disease","authors":[{"name":"Mayara Lisboa Bastos","is_ca":true},{"name":"Sara Perlman‐Arrow","is_ca":true},{"name":"Dick Menzies","is_ca":true},{"name":"Jonathon R. Campbell","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2144935501690905,"gpt":0.4364796057438755,"spread":0.221986055574785,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04170101,0.001032317,0.005723114,0.007234027,0.0003091048,0.003470095,0.001985581,0.001727194,0.004466548],"category_scores_gemma":[0.2103429,0.0009035445,0.01412456,0.009800118,0.001023782,0.002612234,0.001577702,0.00187721,0.000238423],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006855865,"about_ca_system_score_gemma":0.003439647,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009552116,"about_ca_topic_score_gemma":0.009892121,"domain_scores_codex":[0.9287941,0.03646206,0.01885324,0.004072432,0.01089396,0.0009242227],"domain_scores_gemma":[0.7708504,0.1764638,0.04084839,0.002499235,0.008634838,0.0007034603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","study_design_scores_codex":[0.02591679,0.000127854,0.1276875,0.4588278,0.2270105,0.0005595475,0.0005712791,0.004569069,0.0004463169,0.003208098,0.007268504,0.1438068],"study_design_scores_gemma":[0.007649518,0.004343578,0.3122587,0.2022865,0.4370069,0.002287555,0.001262039,0.003546242,0.001431765,0.006040344,0.02156298,0.0003238362],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.07005526,0.8981757,0.001732447,0.003843719,0.0009123767,0.001182298,0.02024302,0.00003012335,0.003825072],"genre_scores_gemma":[0.7705289,0.2128894,0.004464851,0.002097632,0.0007225692,0.003237958,0.005394094,0.00004058047,0.000624034],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.04170101,"threshold_uncertainty_score":0.2205386,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3196702900","doi":"10.1002/anie.202110819","title":"High‐Affinity Dimeric Aptamers Enable the Rapid Electrochemical Detection of Wild‐Type and B.1.1.7 SARS‐CoV‐2 in Unprocessed Saliva","year":2021,"lang":"en","type":"article","venue":"Angewandte Chemie International Edition","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":168,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University Medical Centre; McMaster University","funders":"Institute of Infection and Immunity","keywords":"Saliva; Aptamer; Wild type; Dissociation constant; Chemistry; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Molecular biology; Coronavirus disease 2019 (COVID-19); Chromatography; Virology; Biology; Receptor; Biochemistry; Medicine; Mutant; Gene","authors":[{"name":"Zijie Zhang","is_ca":true},{"name":"Richa Pandey","is_ca":true},{"name":"Jiuxing Li","is_ca":true},{"name":"Jimmy Gu","is_ca":true},{"name":"Dawn White","is_ca":true},{"name":"Hannah D. Stacey","is_ca":true},{"name":"Jann C. Ang","is_ca":true},{"name":"Catherine‐Jean Steinberg","is_ca":true},{"name":"Alfredo Capretta","is_ca":true},{"name":"Carlos D. M. Filipe","is_ca":true},{"name":"Karen Mossman","is_ca":true},{"name":"Cynthia Balion","is_ca":true},{"name":"Matthew S. Miller","is_ca":true},{"name":"Bruno J. Salena","is_ca":true},{"name":"Deborah Yamamura","is_ca":true},{"name":"Leyla Soleymani","is_ca":true},{"name":"John D. Brennan","is_ca":true},{"name":"Yingfu Li","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02270728008149508,"gpt":0.2758217093776004,"spread":0.2531144292961053,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003524589,0.0004995388,0.0002324728,0.000248647,0.00009605577,0.000292745,0.0003208505,0.0006638985,0.0007689155],"category_scores_gemma":[0.0002942067,0.000268792,0.0002154172,0.0001236561,0.0002015336,0.0002179869,0.0002258768,0.0004128237,0.0004295729],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002064491,"about_ca_system_score_gemma":0.0001385313,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002935497,"about_ca_topic_score_gemma":0.0005604065,"domain_scores_codex":[0.999655,0.00006966945,0.00002041649,0.00007655108,0.0001413387,0.00003703067],"domain_scores_gemma":[0.9999042,0.00002638226,0.00002194613,0.000007225618,0.00002437453,0.00001594284],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003834739,0.00002051071,0.0004804218,0.00003874547,0.000005442069,0.00002882343,0.00002498424,0.00007404161,0.9926402,0.00006877744,0.00007907634,0.006500673],"study_design_scores_gemma":[0.000012173,0.0003480725,0.002347634,0.0000054237,0.00001469714,0.0005603701,0.00002661131,0.002477024,0.9922801,0.00005860574,0.001858423,0.00001095311],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9292815,0.005612764,0.06049891,0.0003810631,0.0001422333,0.0001610605,0.0002935095,0.0003701723,0.003258779],"genre_scores_gemma":[0.9437474,0.0009481311,0.05228965,0.0002114993,0.00002585534,0.00006064951,0.0001845298,0.000009593036,0.002522668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007689155,"threshold_uncertainty_score":0.002572298,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4296639039","doi":"10.1038/s41598-022-20076-z","title":"Municipal and neighbourhood level wastewater surveillance and subtyping of an influenza virus outbreak","year":2022,"lang":"en","type":"article","venue":"Scientific Reports","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":161,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"University of Ottawa","keywords":"Subtyping; Outbreak; Pandemic; Environmental health; Virology; Influenza A virus; Population; Public health; Virus; Neighbourhood (mathematics); Medicine; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Computer science; Disease","authors":[{"name":"Élisabeth Mercier","is_ca":true},{"name":"Patrick M. D’Aoust","is_ca":true},{"name":"Ocean Thakali","is_ca":true},{"name":"Nada Hegazy","is_ca":true},{"name":"Jianjun Jia","is_ca":true},{"name":"Zhihao Zhang","is_ca":true},{"name":"Walaa Eid","is_ca":true},{"name":"Julio Plaza‐Díaz","is_ca":true},{"name":"Md Pervez Kabir","is_ca":true},{"name":"Wanting Fang","is_ca":true},{"name":"Aaron Cowan","is_ca":true},{"name":"Sean Stephenson","is_ca":true},{"name":"Lakshmi Pisharody","is_ca":true},{"name":"Alex MacKenzie","is_ca":true},{"name":"Tyson E. Graber","is_ca":true},{"name":"Shen Wan","is_ca":true},{"name":"Robert Delatolla","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0554295632708742,"gpt":0.3012221301386098,"spread":0.2457925668677356,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004306813,0.0003253884,0.0003941983,0.0006151783,0.0004776146,0.0005475281,0.0002236252,0.0004314285,0.0006783136],"category_scores_gemma":[0.0008120826,0.0001759186,0.0002690355,0.0006973559,0.0001919099,0.0002550485,0.000466689,0.0002269804,0.0002865496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006584941,"about_ca_system_score_gemma":0.0006628184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01254994,"about_ca_topic_score_gemma":0.02129398,"domain_scores_codex":[0.9995436,0.00009504803,0.00003438232,0.0001085098,0.0001594633,0.00005899134],"domain_scores_gemma":[0.9996352,0.00005497214,0.00009512348,0.00004149056,0.0001200584,0.00005324004],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008308203,0.0003251075,0.6982312,0.0001764768,0.00008077121,0.001250647,0.0010053,0.02276349,0.2188699,0.0002822084,0.001636391,0.05454762],"study_design_scores_gemma":[0.00002860297,0.001430819,0.827107,0.00004545187,0.00008879639,0.0005255353,0.002636455,0.07688212,0.08605043,0.0005972095,0.004526593,0.00008100084],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943253,0.00006354693,0.003098841,0.00006131388,0.000009674462,0.00005564705,0.0006694342,0.000159446,0.001556714],"genre_scores_gemma":[0.9965891,0.00004294872,0.002499391,0.00001288075,0.000004026919,0.00002027263,0.0004058301,0.000006572727,0.0004190649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01254994,"threshold_uncertainty_score":0.02495378,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3197877735","doi":"10.1016/j.bios.2021.113595","title":"Aptamer-based electrochemical biosensor for rapid detection of SARS-CoV-2: Nanoscale electrode-aptamer-SARS-CoV-2 imaging by photo-induced force microscopy","year":2021,"lang":"en","type":"article","venue":"Biosensors and Bioelectronics","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":157,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Canada Foundation for Innovation; Centre québécois sur les matériaux fonctionnels","keywords":"Aptamer; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Nanoscopic scale; Nanotechnology; Biosensor; 2019-20 coronavirus outbreak; Electrode; Materials science; Microscopy; Sars virus; Atomic force microscopy; Chemistry; Virology; Optics; Infectious disease (medical specialty); Biology; Physics; Medicine; Molecular biology","authors":[{"name":"Juan Carlos Abrego‐Martinez","is_ca":true},{"name":"Maziar Jafari","is_ca":true},{"name":"Siham Chergui","is_ca":true},{"name":"Cătălin Pavel","is_ca":false},{"name":"Diping Che","is_ca":false},{"name":"Mohamed Siaj","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0258188909483235,"gpt":0.2984884052951757,"spread":0.2726695143468522,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004370092,0.0006256698,0.0004066431,0.000356665,0.0002692519,0.0003013593,0.0005850192,0.001219135,0.001230763],"category_scores_gemma":[0.0004131154,0.0004005849,0.0002227196,0.0001942867,0.000243164,0.0004563381,0.000308009,0.0006621974,0.0005984075],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004260594,"about_ca_system_score_gemma":0.0002381629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005950698,"about_ca_topic_score_gemma":0.001783763,"domain_scores_codex":[0.9994954,0.00006692181,0.00002602103,0.0001334173,0.0002160454,0.00006229934],"domain_scores_gemma":[0.999828,0.0000506689,0.00002724695,0.00001319059,0.00005348529,0.00002734211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001170661,0.00001124362,0.00002746453,0.00001123476,0.000001927829,0.00001307059,0.000006419813,0.00002250612,0.9991059,0.000037699,0.00005557722,0.000695341],"study_design_scores_gemma":[0.000006407497,0.00008446182,0.0008139751,0.000002198655,0.000004936893,0.0001882804,0.000009403449,0.002922514,0.9950631,0.00003595767,0.0008608489,0.000007847083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7786975,0.004185859,0.2074896,0.00103686,0.0004223717,0.0002531082,0.000650604,0.001290148,0.005973968],"genre_scores_gemma":[0.8420475,0.001396405,0.1474311,0.000759498,0.00008340646,0.000226346,0.0004854885,0.00005375849,0.007516468],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001230763,"threshold_uncertainty_score":0.00411737,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3025401950","doi":"10.1289/ehp7200","title":"Global Access to Handwashing: Implications for COVID-19 Control in Low-Income Countries","year":2020,"lang":"en","type":"article","venue":"Environmental Health Perspectives","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":157,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Wellcome Trust","keywords":"Environmental health; Transmission (telecommunications); Context (archaeology); Population; Medicine; Pandemic; Global health; Public health; Geography; Coronavirus disease 2019 (COVID-19); Disease; Infectious disease (medical specialty); Nursing","authors":[{"name":"Michael Bräuer","is_ca":true},{"name":"Jeff T Zhao","is_ca":false},{"name":"Fiona B Bennitt","is_ca":false},{"name":"Jeffrey D Stanaway","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.052407301738079,"gpt":0.397264193098475,"spread":0.344856891360396,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006670536,0.0006737223,0.000869449,0.001378759,0.0002832832,0.001722549,0.0007266381,0.0008657934,0.005490206],"category_scores_gemma":[0.02238959,0.0003139575,0.001388468,0.003168823,0.001308279,0.003169002,0.00228488,0.001328814,0.0002822697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00156357,"about_ca_system_score_gemma":0.003048335,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03839621,"about_ca_topic_score_gemma":0.0241267,"domain_scores_codex":[0.9969333,0.001687679,0.0002964876,0.0004579968,0.0002965897,0.0003278008],"domain_scores_gemma":[0.9898929,0.004607336,0.003042094,0.0004662788,0.001206671,0.0007846735],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000135207,0.0001166144,0.8735958,0.004018934,0.001114623,0.0001978158,0.001412337,0.006074107,0.0002144163,0.007492872,0.01131219,0.09431513],"study_design_scores_gemma":[0.0000613561,0.0003609071,0.9381547,0.01014847,0.0009568492,0.000248027,0.005575442,0.008293334,0.0002212953,0.01539311,0.020516,0.00007059472],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5699387,0.1785043,0.0246338,0.1757846,0.00100956,0.0004225017,0.02888025,0.0001788482,0.02064754],"genre_scores_gemma":[0.9650885,0.02414478,0.00390596,0.003962188,0.0001896328,0.0002009982,0.00218426,0.0000184073,0.0003052379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03839621,"threshold_uncertainty_score":0.07634544,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3039893855","doi":"10.1016/j.scitotenv.2020.140709","title":"Transmission of SARS-CoV-2 via fecal-oral and aerosols–borne routes: Environmental dynamics and implications for wastewater management in underprivileged societies","year":2020,"lang":"en","type":"article","venue":"The Science of The Total Environment","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":151,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canada First Research Excellence Fund; University of Alberta","keywords":"Transmission (telecommunications); Pandemic; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Overpopulation; Coronavirus disease 2019 (COVID-19); Wastewater; Outbreak; Coronavirus; Sanitation; Environmental health; Virology; Environmental science; Biology; Environmental engineering; Medicine; Engineering; Telecommunications; Population; Disease; Infectious disease (medical specialty)","authors":[{"name":"Muhammad Arslan","is_ca":true},{"name":"Bin Xu","is_ca":false},{"name":"Mohamed Gamal El‐Din","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02997973095230291,"gpt":0.2619058456604613,"spread":0.2319261147081584,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004526131,0.0002358026,0.0002463848,0.0006454044,0.0005155924,0.001512993,0.0002149254,0.0004491454,0.001659438],"category_scores_gemma":[0.001228465,0.0001622924,0.0002097811,0.0007897546,0.000497141,0.00102073,0.0007149878,0.0003153359,0.0002347718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006803741,"about_ca_system_score_gemma":0.0008689488,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01432488,"about_ca_topic_score_gemma":0.0126689,"domain_scores_codex":[0.9995326,0.0001747025,0.00002589766,0.0000698901,0.00006619598,0.0001307753],"domain_scores_gemma":[0.9993436,0.0001282531,0.0002223096,0.00003185943,0.0001913536,0.00008266371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002994362,0.0001509655,0.9584752,0.00005086535,0.00003834414,0.0004093963,0.001082316,0.0008238156,0.007959022,0.0007161159,0.0006225426,0.02937188],"study_design_scores_gemma":[0.00001043332,0.0003174241,0.9816758,0.00004170987,0.00003237741,0.0006698677,0.007900655,0.003648669,0.001971672,0.0009405679,0.002771242,0.00001954049],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973987,0.0004701489,0.0005728084,0.0003195769,0.00001042361,0.00000736285,0.0001322122,0.000006118546,0.001082578],"genre_scores_gemma":[0.998811,0.0004502877,0.0002456415,0.00003343033,0.00001199302,0.00000394464,0.00007644153,0.000002713317,0.0003645731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01432488,"threshold_uncertainty_score":0.02848297,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3025007192","doi":"10.1016/j.jcv.2020.104433","title":"Real-time PCR-based SARS-CoV-2 detection in Canadian laboratories","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Virology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":149,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Mount Sinai Hospital; Sunnybrook Hospital; BC Centre for Disease Control; Sunnybrook Health Science Centre; St. Michael's Hospital; Saskatchewan Health; Dr. Georges-L.-Dumont University Hospital Centre; St. Joseph’s Healthcare Hamilton; Institut National de Santé Publique du Québec; University of Toronto; St. John’s Health Sciences Centre; Ste. Anne's Hospital; Dalhousie University; Public Health Agency of Canada; Saskatchewan Health Authority; Nova Scotia Health Authority; Toronto Public Health; Public Health Ontario; Hospital for Sick Children","funders":"Nationale Genossenschaft für die Lagerung radioaktiver Abfälle; University of Saskatchewan","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Pandemic; Virology; Medicine; Infectious disease (medical specialty); Outbreak; Pathology","authors":[{"name":"Jason J. LeBlanc","is_ca":true},{"name":"Jonathan B. Gubbay","is_ca":true},{"name":"Yan Li","is_ca":true},{"name":"Robert Needle","is_ca":true},{"name":"Sandra Radons Arneson","is_ca":true},{"name":"D Marcino","is_ca":true},{"name":"Hugues Charest","is_ca":true},{"name":"Guillaume Desnoyers","is_ca":true},{"name":"Kerry Dust","is_ca":false},{"name":"Ramzi Fattouh","is_ca":true},{"name":"Richard Garceau","is_ca":true},{"name":"Gregory German","is_ca":false},{"name":"Todd F. Hatchette","is_ca":true},{"name":"Robert Kozak","is_ca":true},{"name":"Mel Krajden","is_ca":true},{"name":"Theodore I. Kuschak","is_ca":true},{"name":"Amanda Lang","is_ca":true},{"name":"Paul N. Levett","is_ca":true},{"name":"Tony Mazzulli","is_ca":true},{"name":"Ryan McDonald","is_ca":true},{"name":"Samira Mubareka","is_ca":true},{"name":"Natalie Prystajecky","is_ca":true},{"name":"Candy Rutherford","is_ca":true},{"name":"Marek Smieja","is_ca":true},{"name":"Yang Yu","is_ca":true},{"name":"George Zahariadis","is_ca":true},{"name":"Nathan Zelyas","is_ca":true},{"name":"Nathalie Bastien","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0972169457826368,"gpt":0.3967819739354854,"spread":0.2995650281528486,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005508278,0.0007216983,0.0004488948,0.001646108,0.001003288,0.001872373,0.001071166,0.0005261347,0.001355622],"category_scores_gemma":[0.009789278,0.000468884,0.0004364049,0.001445449,0.001426727,0.0006994091,0.0008308585,0.0005955648,0.0002128612],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02285692,"about_ca_system_score_gemma":0.01691019,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8434867,"about_ca_topic_score_gemma":0.921115,"domain_scores_codex":[0.9909026,0.001969015,0.0004750114,0.001126323,0.004346072,0.00118104],"domain_scores_gemma":[0.9954054,0.0009543618,0.0007292868,0.0001724778,0.002415098,0.0003233545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006337088,0.0007736146,0.6558781,0.001616538,0.0004136896,0.0006232213,0.006167949,0.008111925,0.1538227,0.001517894,0.002441396,0.162296],"study_design_scores_gemma":[0.0003210658,0.00443238,0.8677874,0.000311405,0.0005736716,0.0009039351,0.004631713,0.01315456,0.09092262,0.0002842032,0.01645737,0.0002198061],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9839468,0.003255908,0.004050488,0.0003903434,0.00006406162,0.0002304111,0.0007421293,0.000207608,0.007112391],"genre_scores_gemma":[0.992485,0.0007235525,0.005234743,0.0001969737,0.00001329183,0.00004449011,0.0003757614,0.00001175434,0.0009144659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1565133,"threshold_uncertainty_score":0.3148701,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4389732744","doi":"10.1128/cmr.00103-22","title":"Wastewater-based surveillance as a tool for public health action: SARS-CoV-2 and beyond","year":2023,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Alberta Health Services; Libin Cardiovascular Institute of Alberta; University of Alberta; University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Health","keywords":"Context (archaeology); Coronavirus disease 2019 (COVID-19); Pandemic; Wastewater; Business; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Public health; Government (linguistics); Computer science; Environmental planning; Environmental science; Disease; Medicine; Geography; Infectious disease (medical specialty); Environmental engineering; Pathology","authors":[{"name":"Michael D. Parkins","is_ca":true},{"name":"Bonita E. Lee","is_ca":true},{"name":"Nicole Acosta","is_ca":true},{"name":"María A. Bautista","is_ca":true},{"name":"Casey R. J. Hubert","is_ca":true},{"name":"Steve E. Hrudey","is_ca":true},{"name":"Kevin J. Frankowski","is_ca":true},{"name":"Xiaoli Pang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.4812693847601136,"gpt":0.5131173711266368,"spread":0.0318479863665232,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01076922,0.00111287,0.001192495,0.001990105,0.001598087,0.009199833,0.001569237,0.005588464,0.005358402],"category_scores_gemma":[0.008131028,0.000420231,0.001190502,0.001530326,0.005267781,0.008366968,0.007433068,0.006816542,0.001692767],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005091324,"about_ca_system_score_gemma":0.01050727,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007402667,"about_ca_topic_score_gemma":0.005781194,"domain_scores_codex":[0.9938298,0.002727303,0.0003443583,0.0008632446,0.001558809,0.0006765631],"domain_scores_gemma":[0.99075,0.003437985,0.0007162548,0.00053014,0.002669483,0.001896181],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005533847,0.0005161286,0.01245065,0.005025962,0.0002043918,0.0009084366,0.002792388,0.002025212,0.01685606,0.1179954,0.1236023,0.7170697],"study_design_scores_gemma":[0.00005145145,0.0007737528,0.0103602,0.00511045,0.000110287,0.0006040898,0.005858986,0.002880002,0.006706044,0.1025965,0.8647286,0.0002197267],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"review","genre_scores_codex":[0.02521191,0.311543,0.0324731,0.5718521,0.01211264,0.0002106398,0.001236631,0.0008886719,0.04447124],"genre_scores_gemma":[0.3860292,0.3706858,0.06401639,0.1456906,0.009652877,0.0004098416,0.001478175,0.0002905698,0.02174663],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.01076922,"threshold_uncertainty_score":0.05695373,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3158611137","doi":"10.1007/s00216-021-03377-6","title":"Emerging point-of-care biosensors for rapid diagnosis of COVID-19: current progress, challenges, and future prospects","year":2021,"lang":"en","type":"review","venue":"Analytical and Bioanalytical Chemistry","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":123,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Biosensor; Point-of-care testing; Coronavirus disease 2019 (COVID-19); Point of care; Computer science; Risk analysis (engineering); Nanotechnology; Medicine; Pathology; Infectious disease (medical specialty); Disease","authors":[{"name":"Yousef Rasmi","is_ca":false},{"name":"Xiaokang Li","is_ca":false},{"name":"Johra Khan","is_ca":false},{"name":"Tuğba Özer","is_ca":false},{"name":"Jane Ru Choi","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07555813401232894,"gpt":0.381023686981417,"spread":0.3054655529690881,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001750683,0.00117198,0.001842469,0.001684548,0.000208571,0.001502205,0.001287874,0.001674878,0.003101989],"category_scores_gemma":[0.00134187,0.0003525704,0.0007518177,0.001524715,0.0006230132,0.001954651,0.0007585771,0.00263035,0.002291356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006794877,"about_ca_system_score_gemma":0.001375632,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001062737,"about_ca_topic_score_gemma":0.002338659,"domain_scores_codex":[0.9995871,0.00006595925,0.00003550126,0.000077599,0.0001811681,0.00005265047],"domain_scores_gemma":[0.9990988,0.0004103635,0.0001010494,0.00002193017,0.000303327,0.00006457153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009201081,0.000104825,0.0002222736,0.01024023,0.0000893674,0.0001117767,0.00004398992,0.0003488231,0.004858808,0.004499845,0.0177254,0.9616626],"study_design_scores_gemma":[0.0000310681,0.0002684914,0.0007078265,0.00287811,0.0001882291,0.0008726303,0.00008740329,0.00035644,0.002553658,0.003529374,0.9884824,0.00004440879],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001529437,0.9978847,0.0005342218,0.0004610511,0.0002438745,0.000006172147,0.00002538702,0.0000143549,0.0006773653],"genre_scores_gemma":[0.0009532471,0.9971637,0.0006788939,0.0003776178,0.000166702,0.000008255136,0.00004614293,0.000002087456,0.0006034606],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003101989,"threshold_uncertainty_score":0.01037717,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4225310480","doi":"10.1016/j.epidem.2022.100560","title":"A wastewater-based epidemic model for SARS-CoV-2 with application to three Canadian cities","year":2022,"lang":"en","type":"article","venue":"Epidemics","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Toronto Public Health; Alberta Hospital Edmonton; University of Alberta; University of Ottawa; Public Health Agency of Canada","funders":"Ministry of Environment; Université Laval","keywords":"Wastewater; Environmental health; Population; Public health; Basic reproduction number; Epidemiology; Transmission (telecommunications); Medicine; Environmental science; Computer science; Environmental engineering; Pathology; Telecommunications","authors":[{"name":"Shokoofeh Nourbakhsh","is_ca":true},{"name":"Aamir Fazil","is_ca":true},{"name":"Michael Li","is_ca":true},{"name":"Chand S. Mangat","is_ca":true},{"name":"Shelley Peterson","is_ca":true},{"name":"Jade Daigle","is_ca":true},{"name":"Stacie Langner","is_ca":true},{"name":"Jayson Shurgold","is_ca":true},{"name":"Patrick M. D’Aoust","is_ca":true},{"name":"Robert Delatolla","is_ca":true},{"name":"Elizabeth Mercier","is_ca":true},{"name":"Xiaoli Pang","is_ca":true},{"name":"Bonita E. Lee","is_ca":true},{"name":"Rebecca Stuart","is_ca":true},{"name":"Shinthuja Wijayasri","is_ca":true},{"name":"David Champredon","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07396732294252165,"gpt":0.3124884196850803,"spread":0.2385210967425586,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001028373,0.00123144,0.001085584,0.001024747,0.001947297,0.001767541,0.0031676,0.002895014,0.005562189],"category_scores_gemma":[0.002823088,0.0005589196,0.001358522,0.001645801,0.001927741,0.0006602668,0.001841832,0.001618966,0.0003580925],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01558682,"about_ca_system_score_gemma":0.01280484,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9372878,"about_ca_topic_score_gemma":0.8572489,"domain_scores_codex":[0.9994583,0.0001344073,0.00001825428,0.00007994482,0.00006292307,0.0002462065],"domain_scores_gemma":[0.9984432,0.0005877584,0.0001651763,0.00004017182,0.0004956375,0.0002680415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00008050153,0.0000500921,0.00489143,0.0000281107,0.00002612578,0.0001857622,0.0000911235,0.9817301,0.0002889854,0.01005522,0.001515411,0.001057144],"study_design_scores_gemma":[0.00007296774,0.00002597273,0.002368399,0.00000941281,0.00002458994,0.00001895442,0.0002344762,0.9947047,0.00004444348,0.001606474,0.0008567287,0.00003289821],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.874893,0.001285978,0.04723544,0.007294189,0.0002475769,0.0004643219,0.01279435,0.0003593826,0.05542567],"genre_scores_gemma":[0.9721813,0.0005722813,0.006699994,0.0003393734,0.00004123216,0.0001862344,0.002325633,0.00003650856,0.01761743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06271219,"threshold_uncertainty_score":0.126163,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3135621135","doi":"10.1016/j.jes.2021.01.029","title":"Comparison of approaches to quantify SARS-CoV-2 in wastewater using RT-qPCR: Results and implications from a collaborative inter-laboratory study in Canada","year":2021,"lang":"en","type":"article","venue":"Journal of Environmental Sciences","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":121,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Manitoba; Polytechnique Montréal; University of Windsor; Public Health Agency of Canada; University of Ottawa; University of British Columbia; Alberta Hospital Edmonton; University of Saskatchewan; University of Alberta; University of Waterloo; BC Centre for Disease Control; Ontario Clean Water Agency; Canadian Water Network","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Waterloo; Mitacs; Canada First Research Excellence Fund; Canada Research Chairs; Global Water Futures; Alberta Innovates; University of Ottawa","keywords":"Wastewater; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Chromatography; Real-time polymerase chain reaction; Environmental science; Coronavirus; Biology; Chemistry; Environmental chemistry; Medicine; Gene; Environmental engineering; Genetics; Infectious disease (medical specialty)","authors":[{"name":"Alex H. S. Chik","is_ca":true},{"name":"Melissa B. Glier","is_ca":true},{"name":"Mark R. Servos","is_ca":true},{"name":"Chand S. Mangat","is_ca":true},{"name":"Yuanyuan Qiu","is_ca":true},{"name":"Patrick M. D’Aoust","is_ca":true},{"name":"Jean‐Baptiste Burnet","is_ca":true},{"name":"Robert Delatolla","is_ca":true},{"name":"Sarah Dorner","is_ca":true},{"name":"Qiudi Geng","is_ca":true},{"name":"John P. Giesy","is_ca":true},{"name":"R. Michael L. McKay","is_ca":true},{"name":"Michael R. Mulvey","is_ca":true},{"name":"Natalie Prystajecky","is_ca":true},{"name":"Nivetha Srikanthan","is_ca":true},{"name":"Yuwei Xie","is_ca":true},{"name":"Bernadette Conant","is_ca":true},{"name":"Steve E. Hrudey","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2058406085419153,"gpt":0.3635067816654799,"spread":0.1576661731235647,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00910681,0.001177446,0.001403224,0.001574603,0.004283751,0.003447834,0.001799843,0.001656315,0.0008091735],"category_scores_gemma":[0.00569649,0.0006347011,0.001371733,0.002051581,0.002357989,0.0007496565,0.001518004,0.001393526,0.0003630188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02728251,"about_ca_system_score_gemma":0.03236393,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.877745,"about_ca_topic_score_gemma":0.9438474,"domain_scores_codex":[0.9866126,0.001929062,0.0005393565,0.002416006,0.007139918,0.001363051],"domain_scores_gemma":[0.9902542,0.001211396,0.0003811496,0.0003528931,0.007437037,0.0003633528],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00287875,0.002658898,0.1968844,0.001168602,0.0007941653,0.0004357202,0.01229677,0.01196365,0.6720312,0.00204155,0.00306863,0.09377771],"study_design_scores_gemma":[0.000219193,0.003844223,0.5623178,0.0002210974,0.001289523,0.0005569666,0.01574362,0.02196157,0.3664968,0.0009104079,0.02603898,0.0003998627],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9449335,0.001294815,0.03726161,0.001089314,0.0001722971,0.001663654,0.003228372,0.0003151436,0.0100413],"genre_scores_gemma":[0.913803,0.00131814,0.06996643,0.0007942347,0.00003238237,0.0008461138,0.003017799,0.0001567128,0.01006514],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.877745,"threshold_uncertainty_score":0.24595,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2165845866","doi":"10.1093/infdis/jis044","title":"Opportunities and Challenges for Cost-Efficient Implementation of New Point-of-Care Diagnostics for HIV and Tuberculosis","year":2012,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Kellogg's (Canada)","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Tuberculosis; Point-of-care testing; Human immunodeficiency virus (HIV); Point of care; Diagnostic test; Software deployment; Risk analysis (engineering); Medicine; Scale (ratio); Computer science; Data science; Intensive care medicine; Virology; Immunology; Pathology; Pediatrics","authors":[{"name":"Marco Schito","is_ca":false},{"name":"T. Peter","is_ca":false},{"name":"Sean Cavanaugh","is_ca":false},{"name":"Amy S. Piatek","is_ca":false},{"name":"Gary J. Young","is_ca":false},{"name":"Heather Alexander","is_ca":false},{"name":"William Coggin","is_ca":false},{"name":"Gonzalo J. Domingo","is_ca":false},{"name":"David Ellenberger","is_ca":false},{"name":"Eugen Ermantraut","is_ca":false},{"name":"Ilesh Jani","is_ca":false},{"name":"Achilles Katamba","is_ca":false},{"name":"Kara Palamountain","is_ca":true},{"name":"Shaffiq Essajee","is_ca":false},{"name":"David W. Dowdy","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.08918942244145979,"gpt":0.3472093715659028,"spread":0.258019949124443,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0357815,0.001572819,0.001173656,0.00162079,0.002239804,0.009421298,0.005060454,0.01212523,0.02697792],"category_scores_gemma":[0.04032545,0.0007234422,0.002095572,0.001320356,0.003433942,0.01161899,0.006917485,0.007942239,0.006112645],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003984406,"about_ca_system_score_gemma":0.02222939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004760429,"about_ca_topic_score_gemma":0.00454221,"domain_scores_codex":[0.9830908,0.008221782,0.001238736,0.001202604,0.00384202,0.002404019],"domain_scores_gemma":[0.951386,0.0203543,0.003591453,0.002872649,0.01096072,0.01083494],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006697587,0.0008873012,0.006830625,0.002938227,0.0002500849,0.0009899598,0.0007701169,0.009746348,0.00403707,0.1426878,0.2016671,0.6285255],"study_design_scores_gemma":[0.0007251862,0.001741406,0.01667741,0.004868273,0.0002273684,0.002921828,0.007566759,0.01690687,0.002703211,0.2160725,0.7291937,0.0003953495],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.01366244,0.02986003,0.03493633,0.89157,0.004058572,0.0004223967,0.0003895972,0.0005049885,0.02459572],"genre_scores_gemma":[0.3744507,0.09205777,0.3487357,0.1424596,0.01769425,0.002668676,0.001983051,0.0003395311,0.01961076],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.0357815,"threshold_uncertainty_score":0.1892329,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3201603289","doi":"10.1038/s41598-021-97489-9","title":"Limit of detection in different matrices of 19 commercially available rapid antigen tests for the detection of SARS-CoV-2","year":2021,"lang":"en","type":"article","venue":"Scientific Reports","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Brock University","funders":"Economic and Social Research Council; Biotechnology and Biological Sciences Research Council","keywords":"Serial dilution; Detection limit; Context (archaeology); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Virology; Chromatography; Medicine; Biology; Chemistry; Infectious disease (medical specialty); Outbreak; Disease","authors":[{"name":"Ana I. Cubas-Atienzar","is_ca":false},{"name":"Konstantina Kontogianni","is_ca":false},{"name":"Thomas Edwards","is_ca":false},{"name":"Dominic Wooding","is_ca":false},{"name":"Kate Buist","is_ca":false},{"name":"Caitlin R. Thompson","is_ca":false},{"name":"Christopher T. Williams","is_ca":false},{"name":"Edward I. Patterson","is_ca":true},{"name":"Grant L. Hughes","is_ca":false},{"name":"Lisa Baldwin","is_ca":false},{"name":"Camille Escadafal","is_ca":false},{"name":"Jilian A. Sacks","is_ca":false},{"name":"Emily R. Adams","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0813978955842053,"gpt":0.3220766522033188,"spread":0.2406787566191135,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002893984,0.001237416,0.000371042,0.0006437522,0.0003282821,0.001015419,0.0006778109,0.001392641,0.001290952],"category_scores_gemma":[0.004047309,0.0005831468,0.0006079507,0.0003466582,0.0005162117,0.0004120244,0.001023694,0.0007471844,0.0008615469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003827809,"about_ca_system_score_gemma":0.0003182039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005836322,"about_ca_topic_score_gemma":0.0006635933,"domain_scores_codex":[0.9953844,0.001396913,0.0002715395,0.0007253898,0.001971873,0.0002498871],"domain_scores_gemma":[0.998251,0.000713199,0.0002775663,0.0001594095,0.0005221432,0.00007660222],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000228217,0.00006934063,0.00168142,0.00009831905,0.00003524261,0.00006698686,0.0001422754,0.0002458193,0.9946579,0.00005198328,0.0001036458,0.002618727],"study_design_scores_gemma":[0.00001970237,0.001529818,0.007102483,0.00004843836,0.00005946076,0.0006815001,0.0001588239,0.00310193,0.9846582,0.00009106762,0.002517578,0.00003093583],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9639358,0.003769151,0.02814485,0.000242486,0.0001874465,0.0002235157,0.0005415108,0.0003259628,0.002629215],"genre_scores_gemma":[0.9571655,0.001401624,0.03618445,0.0003500982,0.00004957456,0.0002558612,0.001513389,0.00006454036,0.0030151],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002893984,"threshold_uncertainty_score":0.01530504,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3096972674","doi":"10.1128/jcm.01731-20","title":"Highly Sensitive and Specific Multiplex Antibody Assays To Quantify Immunoglobulins M, A, and G against SARS-CoV-2 Antigens","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Ministerio de Ciencia e Innovación","keywords":"Multiplex; Virology; Serology; Antibody; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Antigen; Immunology; Pandemic; Coronavirus disease 2019 (COVID-19); Biology; Medicine; Disease; Infectious disease (medical specialty); Bioinformatics","authors":[{"name":"Carlota Dobaño","is_ca":false},{"name":"Marta Vidal","is_ca":false},{"name":"Rebeca Santano","is_ca":false},{"name":"Alfons Jiménez","is_ca":false},{"name":"Jordi Chi","is_ca":false},{"name":"Diana Barrios","is_ca":false},{"name":"Gemma Ruiz‐Olalla","is_ca":false},{"name":"Natalia Rodrigo Melero","is_ca":false},{"name":"Carlo Carolis","is_ca":false},{"name":"Daniel Parras","is_ca":false},{"name":"Pau Serra","is_ca":false},{"name":"Paula Martínez de Aguirre","is_ca":false},{"name":"Francisco Carmona-Torre","is_ca":false},{"name":"Gabriel Reina","is_ca":false},{"name":"Pere Santamaría","is_ca":true},{"name":"Alfredo Mayor","is_ca":false},{"name":"Alberto L. García‐Basteiro","is_ca":false},{"name":"Luís Izquierdo","is_ca":false},{"name":"Ruth Aguilar","is_ca":false},{"name":"Gemma Moncunill","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1260734663400916,"gpt":0.4071723534015037,"spread":0.2810988870614121,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002354764,0.001632036,0.0007902363,0.001412777,0.0002609247,0.0006881479,0.0007485985,0.0009689175,0.0009352575],"category_scores_gemma":[0.00144337,0.00041759,0.0006254534,0.0008394843,0.0004001773,0.0005574509,0.0006264873,0.0007604343,0.0006607894],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004109398,"about_ca_system_score_gemma":0.0002250798,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003747676,"about_ca_topic_score_gemma":0.0006732357,"domain_scores_codex":[0.9977791,0.0005289618,0.0001493994,0.0005643672,0.0007830345,0.0001952154],"domain_scores_gemma":[0.9990367,0.0003179798,0.0002404444,0.00007915467,0.000269193,0.00005662202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001463436,0.0002204739,0.009283826,0.0002772603,0.0001051096,0.00004752303,0.00008246653,0.00125648,0.9532681,0.0002649502,0.0005821072,0.03446529],"study_design_scores_gemma":[0.00004245824,0.001289085,0.02622879,0.00005035064,0.0001218398,0.0006373728,0.00009951104,0.02465881,0.9416379,0.0006170415,0.004552655,0.00006414837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.648411,0.007537838,0.332954,0.0003085296,0.0002674469,0.0008425329,0.002477894,0.002304125,0.004896563],"genre_scores_gemma":[0.7642601,0.002309302,0.2257124,0.0005720688,0.0001624931,0.0009197355,0.001780378,0.00004802507,0.004235384],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002354764,"threshold_uncertainty_score":0.01245338,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3020950648","doi":"10.1016/j.jcv.2020.104423","title":"SARS-CoV-2 detection by direct rRT-PCR without RNA extraction","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Virology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Université du Québec à Trois-Rivières; Centre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-Québec","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); RNA extraction; RNA; Virology; Coronavirus disease 2019 (COVID-19); Extraction (chemistry); 2019-20 coronavirus outbreak; Pandemic; Real-time polymerase chain reaction; Biology; Medicine; Chromatography; Chemistry; Gene; Internal medicine; Genetics; Disease","authors":[{"name":"Natacha Mérindol","is_ca":true},{"name":"Geneviève Pépin","is_ca":true},{"name":"Caroline Marchand","is_ca":true},{"name":"Marylène Rheault","is_ca":true},{"name":"Christine Peterson","is_ca":true},{"name":"André Poirier","is_ca":true},{"name":"Claudia Houle","is_ca":true},{"name":"Hugo Germain","is_ca":true},{"name":"Alexis Danylo","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1465367695478845,"gpt":0.4403198841621289,"spread":0.2937831146142443,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001842355,0.001582308,0.0008383524,0.0009539207,0.0003512074,0.0009195659,0.0007042889,0.001144852,0.002713536],"category_scores_gemma":[0.002573415,0.0006437654,0.0006725861,0.0005733999,0.0007809265,0.0006450671,0.0005476958,0.0010824,0.003519516],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000204062,"about_ca_system_score_gemma":0.0003679482,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003136751,"about_ca_topic_score_gemma":0.0008539883,"domain_scores_codex":[0.9944822,0.001635839,0.0004663222,0.001567535,0.001474342,0.0003739042],"domain_scores_gemma":[0.9985177,0.0007159836,0.000220519,0.0002114448,0.0002931449,0.00004119309],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001553825,0.0001047082,0.001516502,0.0001918725,0.00001521859,0.00005479578,0.00008814302,0.0001077135,0.9924413,0.00008921706,0.0001158634,0.005119293],"study_design_scores_gemma":[0.00001347983,0.0008184019,0.003941936,0.00003324026,0.00006386626,0.0004443487,0.00006617729,0.001642888,0.9888151,0.0001032036,0.004030963,0.00002644151],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6492189,0.00522033,0.3274613,0.0003733727,0.0007213288,0.002066445,0.002904936,0.002511916,0.009521468],"genre_scores_gemma":[0.5053588,0.004949172,0.4599149,0.0006736657,0.0002909978,0.002053897,0.009817017,0.0006962901,0.01624536],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002713536,"threshold_uncertainty_score":0.009743392,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4296940672","doi":"10.1016/j.scitotenv.2022.158964","title":"Does normalization of SARS-CoV-2 concentrations by Pepper Mild Mottle Virus improve correlations and lead time between wastewater surveillance and clinical data in Alberta (Canada): comparing twelve SARS-CoV-2 normalization approaches","year":2022,"lang":"en","type":"article","venue":"The Science of The Total Environment","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta; Alberta Environment and Protected Areas","funders":"","keywords":"Normalization (sociology); Population; Wastewater; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Sewage; Coronavirus disease 2019 (COVID-19); Environmental science; Veterinary medicine; Environmental engineering; Medicine; Internal medicine; Environmental health","authors":[{"name":"Rasha Maal‐Bared","is_ca":true},{"name":"Yuanyuan Qiu","is_ca":true},{"name":"Qiaozhi Li","is_ca":true},{"name":"Tiejun Gao","is_ca":true},{"name":"Steve E. Hrudey","is_ca":true},{"name":"Sudha Bhavanam","is_ca":true},{"name":"Norma J. Ruecker","is_ca":false},{"name":"Erik Ellehoj","is_ca":false},{"name":"Bonita E. Lee","is_ca":true},{"name":"Xiaoli Pang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.06261168326369351,"gpt":0.2808092533741947,"spread":0.2181975701105012,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008589614,0.0008542898,0.0007955222,0.001196072,0.000856737,0.002073557,0.001229031,0.0009371212,0.0007484821],"category_scores_gemma":[0.009899812,0.0003244322,0.0009603127,0.00153136,0.0008786438,0.0006295005,0.0006536804,0.0007347157,0.0003490808],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009513639,"about_ca_system_score_gemma":0.0110157,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7563589,"about_ca_topic_score_gemma":0.855958,"domain_scores_codex":[0.9957742,0.001267781,0.000195394,0.0008907765,0.001319838,0.0005519348],"domain_scores_gemma":[0.9943191,0.001855443,0.0007052966,0.0004037205,0.002355891,0.0003605695],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003461337,0.0002615718,0.9092281,0.0001330041,0.001132196,0.00005119321,0.0005015905,0.01203543,0.008652675,0.0002763731,0.001854728,0.06241168],"study_design_scores_gemma":[0.00009800631,0.0007166013,0.956205,0.00004346433,0.0006318124,0.00009872489,0.0008644479,0.02897097,0.009476613,0.0002497517,0.002578936,0.0000655443],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9848016,0.001743788,0.007724691,0.0006543649,0.0001215833,0.0001011741,0.001835513,0.0002993017,0.002717986],"genre_scores_gemma":[0.9897287,0.0004352121,0.006154235,0.0002175689,0.00001529394,0.00002023822,0.002092238,0.00004997718,0.001286497],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2436411,"threshold_uncertainty_score":0.4901518,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2046824697","doi":"10.1086/529386","title":"Use of Throat Swab or Saliva Specimens for Detection of Respiratory Viruses in Children","year":2008,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Provincial Laboratory of Public Health; Stollery Children's Hospital; University of Alberta","funders":"","keywords":"Saliva; Throat; Virology; Virus; Medicine; Antigen; Microbiology; Biology; Immunology; Internal medicine","authors":[{"name":"Joan Robinson","is_ca":true},{"name":"Bonita E. Lee","is_ca":true},{"name":"Sushma Kothapalli","is_ca":true},{"name":"William Craig","is_ca":true},{"name":"Julie D. Fox","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.2292855362056739,"gpt":0.4137622067616617,"spread":0.1844766705559878,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00306169,0.0008130706,0.0006547378,0.0007789035,0.0003476809,0.0007536716,0.0004391843,0.0006808647,0.0009951361],"category_scores_gemma":[0.007937007,0.0003800521,0.0004003805,0.0004755754,0.0006872519,0.0006375533,0.0004392993,0.0004949206,0.0004577628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005272351,"about_ca_system_score_gemma":0.0007711634,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002806698,"about_ca_topic_score_gemma":0.003097,"domain_scores_codex":[0.9968799,0.001168953,0.0004596738,0.000356217,0.0009021871,0.0002330293],"domain_scores_gemma":[0.9947488,0.002723748,0.001102957,0.0001989022,0.000912598,0.0003129574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005117859,0.00007321861,0.96741,0.0003338218,0.00007140134,0.0007015456,0.0004859578,0.0001463883,0.01642702,0.00003012582,0.0001697804,0.01363896],"study_design_scores_gemma":[0.00005800869,0.004530153,0.9210055,0.0004245178,0.0002259402,0.01110115,0.001574608,0.001111874,0.056801,0.0000824623,0.003042099,0.00004265032],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937169,0.003502606,0.001156789,0.00005796287,0.00003168117,0.00007823149,0.0002785372,0.00002722968,0.001150182],"genre_scores_gemma":[0.9927806,0.001657575,0.004649143,0.00009916515,0.00002474622,0.00008585655,0.0005190351,0.00001265066,0.0001712207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00306169,"threshold_uncertainty_score":0.01619202,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3122970113","doi":"10.1128/jcm.02427-20","title":"Self-Collected Saline Gargle Samples as an Alternative to Health Care Worker-Collected Nasopharyngeal Swabs for COVID-19 Diagnosis in Outpatients","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":109,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Vancouver General Hospital; McMaster University; BC Centre for Disease Control; B.C. Women's Hospital & Health Centre; University of British Columbia","funders":"","keywords":"Medicine; Saliva; Coronavirus disease 2019 (COVID-19); Saline; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Internal medicine; 2019-20 coronavirus outbreak; Pathology; Outbreak; Disease; Infectious disease (medical specialty)","authors":[{"name":"David A. Goldfarb","is_ca":true},{"name":"Peter Tilley","is_ca":true},{"name":"Ghada N. Al‐Rawahi","is_ca":true},{"name":"Jocelyn A. Srigley","is_ca":true},{"name":"Geoffrey Ford","is_ca":true},{"name":"Heather Pedersen","is_ca":true},{"name":"Abhilasha Pabbi","is_ca":true},{"name":"Stephanie Hannam-Clark","is_ca":true},{"name":"Marthe Charles","is_ca":true},{"name":"Michelle Dittrick","is_ca":true},{"name":"Vijay Gadkar","is_ca":true},{"name":"Jeffrey M. Pernica","is_ca":true},{"name":"Linda Hoang","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1145983614648537,"gpt":0.454444043280441,"spread":0.3398456818155873,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003238002,0.0004741134,0.0006437647,0.0004098174,0.0002590187,0.0007608794,0.0003132785,0.000519574,0.0007600427],"category_scores_gemma":[0.008740805,0.0003521456,0.0003446706,0.0002219725,0.0002829538,0.0004247428,0.0005319879,0.0003619016,0.0002895228],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002654856,"about_ca_system_score_gemma":0.0002693651,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001680966,"about_ca_topic_score_gemma":0.002727748,"domain_scores_codex":[0.9970953,0.001425097,0.0001966463,0.0002689396,0.0008487672,0.0001651853],"domain_scores_gemma":[0.9968492,0.001070664,0.0009587751,0.0001654389,0.0006498381,0.0003060729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002270567,0.0009429671,0.9596789,0.0001260612,0.00005542648,0.0003190842,0.002290985,0.0001216786,0.01499645,0.00001505357,0.0001756515,0.0190071],"study_design_scores_gemma":[0.00008026207,0.01191512,0.9773529,0.00005016311,0.00007444587,0.0009021264,0.002132663,0.001528159,0.005376096,0.00002485282,0.0005355341,0.00002765708],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995672,0.00007097042,0.0001214496,0.00001435748,0.000003535202,0.00002702103,0.00002611491,0.000005238001,0.000164034],"genre_scores_gemma":[0.9985774,0.0000697056,0.0009996929,0.00005424222,0.00001263414,0.00003339562,0.0001013066,0.000004488943,0.0001472332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003238002,"threshold_uncertainty_score":0.01712441,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3036994456","doi":"10.1093/infdis/jiaa370","title":"Suboptimal Biological Sampling as a Probable Cause of False-Negative COVID-19 Diagnostic Test Results","year":2020,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":108,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; St. Paul's Hospital; AIDS Vancouver; Simon Fraser University","funders":"","keywords":"Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Diagnostic test; 2019-20 coronavirus outbreak; Sampling (signal processing); False Negative Reactions; Test (biology); Medicine; Biology; Virology; Computer science; Pathology; Internal medicine; Emergency medicine; Disease; Outbreak; Infectious disease (medical specialty); Ecology","authors":[{"name":"Natalie N. Kinloch","is_ca":true},{"name":"Gordon Ritchie","is_ca":true},{"name":"Chanson J. Brumme","is_ca":true},{"name":"Winnie Dong","is_ca":true},{"name":"Weiyan Dong","is_ca":true},{"name":"Tanya Lawson","is_ca":true},{"name":"R. Brad Jones","is_ca":false},{"name":"Julio Montaner","is_ca":true},{"name":"Victor C. M. Leung","is_ca":true},{"name":"Marc G. Romney","is_ca":true},{"name":"Aleksandra Stefanovic","is_ca":true},{"name":"Nancy Matic","is_ca":true},{"name":"Christopher F. Lowe","is_ca":true},{"name":"Zabrina L. Brumme","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.09510499520544297,"gpt":0.3471935717867776,"spread":0.2520885765813347,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006125544,0.0004499721,0.0004193954,0.0008107117,0.0004816031,0.001084481,0.0004776004,0.0005753762,0.0008072682],"category_scores_gemma":[0.01524405,0.000353314,0.0001942713,0.000560238,0.00132106,0.0003584473,0.0005491258,0.0004461117,0.0002534428],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004071365,"about_ca_system_score_gemma":0.0004079694,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001279094,"about_ca_topic_score_gemma":0.001875096,"domain_scores_codex":[0.9937617,0.002062479,0.0007956874,0.0006194866,0.002379021,0.0003815251],"domain_scores_gemma":[0.9916135,0.004657475,0.00201592,0.0006595702,0.0008871721,0.0001663407],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006587381,0.0001276096,0.8831995,0.0002397398,0.0000706552,0.002050402,0.001336091,0.0005899239,0.09203148,0.000448704,0.0004166195,0.0188306],"study_design_scores_gemma":[0.00004181491,0.001439568,0.6254378,0.000241631,0.0002856434,0.01776519,0.002023218,0.01131063,0.3340617,0.00112502,0.006217093,0.00005073786],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9843401,0.001596655,0.01202539,0.0002685438,0.0000882641,0.00007666968,0.0001120199,0.00006299486,0.001429359],"genre_scores_gemma":[0.9938269,0.0001909566,0.005484908,0.0002036891,0.00002105291,0.00001882163,0.0001007896,0.00001132989,0.0001414127],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006125544,"threshold_uncertainty_score":0.03239536,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4223924166","doi":"10.1186/s12889-022-13127-7","title":"Barriers to and strategies to address COVID-19 testing hesitancy: a rapid scoping review","year":2022,"lang":"en","type":"article","venue":"BMC Public Health","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":106,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"St. Michael's Hospital; Izaak Walton Killam Health Centre; Toronto Rehabilitation Institute; Impact; Dalhousie University; University of Toronto; McMaster University; Nova Scotia Health Authority","funders":"Health Canada","keywords":"Medicine; Grey literature; MEDLINE; Biostatistics; Scopus; Coronavirus disease 2019 (COVID-19); Test strategy; Population; Public health; Family medicine; Nursing; Environmental health; Disease; Pathology; Infectious disease (medical specialty)","authors":[{"name":"Mark Embrett","is_ca":true},{"name":"Meaghan Sim","is_ca":true},{"name":"Hilary A. T. Caldwell","is_ca":true},{"name":"Leah Boulos","is_ca":false},{"name":"Ziwa Yu","is_ca":true},{"name":"Gina Agarwal","is_ca":true},{"name":"Rhiannon Cooper","is_ca":true},{"name":"Allyson Gallant","is_ca":true},{"name":"Iwona A. Bielska","is_ca":true},{"name":"Jawad Chishtie","is_ca":true},{"name":"Kathryn Stone","is_ca":true},{"name":"Janet Curran","is_ca":true},{"name":"Andrea C. Tricco","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1994374879072489,"gpt":0.4201147673448262,"spread":0.2206772794375773,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.07092333,0.002154321,0.006357495,0.03183734,0.002417219,0.009936616,0.004317934,0.005657818,0.007002771],"category_scores_gemma":[0.2350648,0.002462968,0.007746468,0.02427602,0.002023246,0.01169081,0.006991516,0.004254233,0.001294465],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01592438,"about_ca_system_score_gemma":0.08555989,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02692851,"about_ca_topic_score_gemma":0.0753438,"domain_scores_codex":[0.9560625,0.01680597,0.01518313,0.00151015,0.008879413,0.001558788],"domain_scores_gemma":[0.7709752,0.1575789,0.02311083,0.003084396,0.04315562,0.002095053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.00008713181,0.00004261208,0.0009026381,0.7697971,0.001431637,0.0002612839,0.003359521,0.0003163372,0.0002157327,0.003049596,0.01988192,0.2006546],"study_design_scores_gemma":[0.00002145145,0.00002419675,0.0005146279,0.9585494,0.001610224,0.00007920776,0.001292529,0.00007631368,0.00005683372,0.0005592072,0.03719371,0.00002233548],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00134585,0.9713982,0.002047603,0.01474096,0.001191953,0.004678467,0.0009158024,0.00006212052,0.003619146],"genre_scores_gemma":[0.007586343,0.9771698,0.006005923,0.003244368,0.000230419,0.004586468,0.0005314319,0.00002547063,0.000619844],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.07092333,"threshold_uncertainty_score":0.3750829,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3024861400","doi":"10.1016/j.jcv.2020.104442","title":"A combined oropharyngeal/nares swab is a suitable alternative to nasopharyngeal swabs for the detection of SARS-CoV-2","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Virology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Nova Scotia Health Authority; Dalhousie University","funders":"Department of Health, Western Cape Government; Nova Scotia Department of Health and Wellness","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Economic shortage; 2019-20 coronavirus outbreak; Pandemic; Virology; Medicine; Internal medicine; Infectious disease (medical specialty)","authors":[{"name":"Jason J. LeBlanc","is_ca":true},{"name":"Charles Heinstein","is_ca":true},{"name":"Janice Pettipas","is_ca":true},{"name":"Todd F. Hatchette","is_ca":true},{"name":"Glenn Patriquin","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.1800827871802606,"gpt":0.4311628049837301,"spread":0.2510800178034696,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001540473,0.00122256,0.0008673688,0.0008733527,0.0003184726,0.001339166,0.0004587884,0.0008040741,0.002318209],"category_scores_gemma":[0.002394014,0.0004532155,0.000561349,0.0005081962,0.0003337061,0.0009797463,0.0007026045,0.000659652,0.001188642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001926962,"about_ca_system_score_gemma":0.0004829469,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00167881,"about_ca_topic_score_gemma":0.005522457,"domain_scores_codex":[0.9967631,0.001289547,0.0002347766,0.0006138074,0.0008807739,0.0002179927],"domain_scores_gemma":[0.9989458,0.0003334741,0.0002412118,0.00009467103,0.0002722466,0.0001126553],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004621351,0.0008007661,0.14389,0.001126287,0.0004583972,0.002414565,0.0003069162,0.0003136448,0.7235627,0.0001215577,0.00127698,0.1211068],"study_design_scores_gemma":[0.0002750489,0.01798865,0.498841,0.0009901109,0.001239976,0.02536061,0.002451953,0.00647357,0.4155475,0.0004826115,0.03011497,0.0002339371],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9650418,0.009473504,0.01384938,0.0007758525,0.0004049984,0.0004307362,0.001115959,0.0001909595,0.008716911],"genre_scores_gemma":[0.9631032,0.003500356,0.02879812,0.0005710381,0.0001560613,0.00010261,0.0008208136,0.00004239054,0.002905352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002318209,"threshold_uncertainty_score":0.008146882,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3120522994","doi":"10.1016/j.scitotenv.2020.144786","title":"Evaluation of two rapid ultrafiltration-based methods for SARS-CoV-2 concentration from wastewater","year":2021,"lang":"en","type":"article","venue":"The Science of The Total Environment","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Universitat de Barcelona; Ministerio de Economía y Competitividad; Ministerio de Ciencia, Innovación y Universidades; Centres de Recerca de Catalunya; Canadian Institute for Advanced Research","keywords":"Ultrafiltration (renal); Centrifugation; Chromatography; Wastewater; Murine norovirus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Chemistry; Virus; Virology; Coronavirus disease 2019 (COVID-19); Biology; Environmental science; Norovirus; Medicine; Environmental engineering","authors":[{"name":"Elisenda Forés","is_ca":false},{"name":"Sílvia Bofill-Mas","is_ca":false},{"name":"Marta Itarte","is_ca":false},{"name":"Sandra Martínez‐Puchol","is_ca":false},{"name":"Ayalkibet Hundesa","is_ca":false},{"name":"Miquel Calvo","is_ca":false},{"name":"Carles Borrego","is_ca":false},{"name":"Lluís Corominas","is_ca":false},{"name":"Rosina Gironés","is_ca":false},{"name":"Marta Rusiñol","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.07848050354727189,"gpt":0.3638928771903238,"spread":0.2854123736430519,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002654734,0.001520059,0.0009803571,0.0007753674,0.0005012285,0.001278813,0.001230652,0.00243193,0.0005794562],"category_scores_gemma":[0.003440093,0.0006142978,0.0008464145,0.0004106861,0.0006663482,0.0009333062,0.0007842536,0.0009675287,0.0004776671],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001139714,"about_ca_system_score_gemma":0.001145983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002081056,"about_ca_topic_score_gemma":0.003216946,"domain_scores_codex":[0.9962454,0.0007867953,0.0002193154,0.0006065671,0.001916473,0.0002253289],"domain_scores_gemma":[0.9981053,0.0005939755,0.0002689543,0.000110178,0.0007952387,0.0001263703],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001151378,0.0004403088,0.001606771,0.0002975022,0.00005819883,0.00005309676,0.00009618718,0.0004331283,0.9821977,0.0001024674,0.0001264768,0.0134366],"study_design_scores_gemma":[0.0001227485,0.003147342,0.004696992,0.0000234795,0.00009053342,0.0002981601,0.0001210392,0.00604874,0.98388,0.00007688405,0.001431276,0.00006274687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9216764,0.003483555,0.07042565,0.000452343,0.000500237,0.0009528093,0.0006891909,0.0003845603,0.001435337],"genre_scores_gemma":[0.8857735,0.002446111,0.1045247,0.0005627929,0.0001236244,0.0007212231,0.001032828,0.00007062539,0.004744573],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002654734,"threshold_uncertainty_score":0.01403975,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}