{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":682,"total_is_capped":false,"direct_labels_cover":0,"predictions_cover":682,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"73413ff83ee6","filters":{"topic":"Syphilis Diagnosis and Treatment"}},"results":[{"id":"W2027328166","doi":"10.1136/sti.2006.024265","title":"Rapid tests for sexually transmitted infections (STIs): the way forward","year":2006,"lang":"en","type":"review","venue":"Sexually Transmitted Infections","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":601,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"International Centre for Infectious Diseases","funders":"","keywords":"Medicine; Congenital syphilis; Syphilis; Sexually transmitted disease; Chlamydia; Reproductive health; Environmental health; Family medicine; Human immunodeficiency virus (HIV); Immunology; Population","retraction":null,"screen_n_in":null,"score":{"opus":0.04438605822085204,"gpt":0.3345606619274925,"spread":0.2901746037066405,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0006278512,0.001636431,0.003297363,0.001024748,0.001371126,0.0002171233,0.000437931,0.00118747,0.0004848862],"category_scores_gemma":[0.0002887993,0.001111761,0.002715788,0.002320608,0.0003889707,0.0002413167,0.00003679069,0.001525403,0.0002073444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000580465,"about_ca_system_score_gemma":0.00142944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004874751,"about_ca_topic_score_gemma":0.001654594,"domain_scores_codex":[0.9940782,0.0004218088,0.002064483,0.001478571,0.0006901721,0.001266753],"domain_scores_gemma":[0.9934396,0.00340312,0.0005475557,0.001575716,0.000561321,0.000472654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003266325,0.005382717,0.000395624,0.008590952,0.004366409,0.00003948234,0.0002628264,0.00002148593,0.000003876418,0.000977691,0.0207573,0.959169],"study_design_scores_gemma":[0.003173366,0.003096163,0.001280689,0.003599283,0.01582474,0.0007560463,0.0000463034,0.00002823847,0.00000692423,0.0002968414,0.9708765,0.001014966],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002563205,0.9689779,0.007238123,0.001515369,0.001808845,0.01217,0.001564095,0.001072323,0.005397042],"genre_scores_gemma":[0.001046264,0.9780815,0.000500532,0.0005963612,0.001509162,0.01125177,0.004029402,0.0004555274,0.002529466],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.958154,"threshold_uncertainty_score":0.999929,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W24953348","doi":"10.1155/2005/597580","title":"The Laboratory Diagnosis of Syphilis","year":2005,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":259,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"St. John’s Health Sciences Centre","funders":"","keywords":"Syphilis; Medicine; Virology; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.005013297433400067,"gpt":0.2331310649142315,"spread":0.2281177674808315,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001949689,0.00009609809,0.0003001884,0.0001179618,0.000119168,0.00001055052,0.00007649766,0.0001074657,0.0005498845],"category_scores_gemma":[0.0008995493,0.00005624579,0.0001265181,0.00009817617,0.0004818389,0.0000300148,0.00001065098,0.000157197,0.000006103626],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001157262,"about_ca_system_score_gemma":0.001464146,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007466138,"about_ca_topic_score_gemma":0.008862051,"domain_scores_codex":[0.9992083,0.00006344329,0.0003475353,0.00008980524,0.00007131218,0.0002195594],"domain_scores_gemma":[0.9981607,0.0003316238,0.0001483817,0.0001088765,0.0002247793,0.001025677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003303495,0.0001888645,0.9208432,0.00002762381,0.0003033569,0.0002015863,0.0000927603,0.000001161006,0.0001092753,0.0004757733,0.01806355,0.05965981],"study_design_scores_gemma":[0.00320445,0.001499535,0.3964668,0.0003595152,0.0005389831,0.00235556,0.000153581,0.000003404901,0.0007842988,0.0001655569,0.5943343,0.0001340043],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9521888,0.03669574,0.00000253891,0.01043579,0.0003073824,0.0001023639,0.0001185999,0.000003905983,0.0001448284],"genre_scores_gemma":[0.9922148,0.005550426,0.000009607421,0.001842129,0.0003456665,0.000008677992,0.000006406469,0.000007918507,0.00001435228],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5762707,"threshold_uncertainty_score":0.6020849,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2075447938","doi":"10.1371/journal.pntd.0000148","title":"On the Origin of the Treponematoses: A Phylogenetic Approach","year":2008,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":223,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Mount Sinai Hospital; University of Toronto; Lakeridge Health","funders":"Wenner-Gren Foundation; Howard Hughes Medical Institute; National Institutes of Health; National Science Foundation","keywords":"Treponema; Syphilis; Old World; Biology; Subspecies; Sexually transmitted disease; Phylogenetic tree; Virology; Genetics; Zoology; Gene; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.03898055399934167,"gpt":0.2509971885544478,"spread":0.2120166345551061,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000001411243,0.000160531,0.000289835,0.00003737464,0.0001450391,0.000007115199,0.0001560567,0.00004505474,0.0002006346],"category_scores_gemma":[0.0003669779,0.00006944753,0.0002441008,0.0003210091,0.0002394631,0.00001161578,0.00002756242,0.0001108227,0.00001846607],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004225706,"about_ca_system_score_gemma":0.0001134646,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001157595,"about_ca_topic_score_gemma":0.000001051246,"domain_scores_codex":[0.9988051,0.0001211492,0.0002145949,0.0002394354,0.0004260702,0.000193647],"domain_scores_gemma":[0.9987641,0.0003806636,0.00006911862,0.0005905857,0.00006747487,0.0001280751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000594775,0.01803224,0.940833,0.0001804065,0.0009230213,0.0001130577,0.0002683644,0.00003927148,0.02435332,0.00719293,0.007018449,0.0004512146],"study_design_scores_gemma":[0.0009924393,0.0003521203,0.9932621,0.0001140517,0.0004011715,0.00002848193,0.00002043958,0.0001941909,0.004159252,0.0003190366,0.00008718029,0.00006960528],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960055,0.0008046898,0.000009179438,0.00116127,0.00003010379,0.0006979072,0.00003362596,0.00004997342,0.001207756],"genre_scores_gemma":[0.9987106,0.0001162039,0.00005176901,0.0007201799,0.00007802654,0.0002269444,0.00001222446,0.00001861155,0.00006547511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05242908,"threshold_uncertainty_score":0.2831988,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2153159274","doi":"10.1128/cvi.00681-14","title":"Recent Trends in the Serologic Diagnosis of Syphilis","year":2014,"lang":"en","type":"review","venue":"Clinical and Vaccine Immunology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":208,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta; Provincial Health Services Authority; University of British Columbia","funders":"","keywords":"Syphilis; Neurosyphilis; Medicine; Serology; Gold standard (test); Point-of-care testing; Intensive care medicine; Congenital syphilis; Diagnostic test; Medical diagnosis; Immunology; Pediatrics; Pathology; Internal medicine; Antibody; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.1609721837193018,"gpt":0.4517113668601103,"spread":0.2907391831408084,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00107745,0.0003717928,0.003579045,0.0002734044,0.00003388411,0.000007188624,0.0002683795,0.0006230071,0.0003844158],"category_scores_gemma":[0.0007347616,0.0001810473,0.0006870289,0.0004500611,0.0001573867,0.00001585441,0.0001451348,0.0007511618,0.00003296858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002912463,"about_ca_system_score_gemma":0.00005806373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004134625,"about_ca_topic_score_gemma":0.0000520104,"domain_scores_codex":[0.9965472,0.0008509181,0.001678344,0.0005300242,0.0001044199,0.0002890733],"domain_scores_gemma":[0.9954802,0.003168648,0.0004809497,0.0007457894,0.00005901976,0.00006536816],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000055213,0.001162852,0.0353612,0.0008140451,0.0004608252,0.00003749952,0.00001922312,1.093168e-8,9.07261e-9,0.0001294259,0.002266915,0.9596928],"study_design_scores_gemma":[0.001745946,0.002149808,0.1245879,0.002093604,0.001664896,0.0001508257,0.0000100151,4.475352e-7,2.590044e-7,0.0000721606,0.8673994,0.0001247694],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.008168225,0.9861411,1.551206e-7,0.004448584,0.000292495,0.0005417727,0.00001599608,0.00001642787,0.0003752198],"genre_scores_gemma":[0.002403524,0.9959961,0.00001594335,0.0006615817,0.0002456328,0.0004165154,0.0001662165,0.00002338018,0.00007115187],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.959568,"threshold_uncertainty_score":0.7382894,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4384938772","doi":"10.1016/s0140-6736(22)02348-0","title":"Syphilis","year":2023,"lang":"en","type":"review","venue":"The Lancet","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":206,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"","keywords":"Syphilis; Medicine; Latent Syphilis; Chancre; Treponema; Primary Syphilis; Penicillin; Incidence (geometry); Psychological intervention; Immunology; Pediatrics; Antibiotics; Human immunodeficiency virus (HIV); Psychiatry; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.2557204877009095,"gpt":0.4262308564597036,"spread":0.1705103687587941,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002212654,0.0002128307,0.001949586,0.00005210515,0.00004671481,0.00002038815,0.0002159697,0.0001124454,0.0001706838],"category_scores_gemma":[0.00009645701,0.00009502884,0.0004055316,0.0002440886,0.00003757372,0.000008231163,0.00006878588,0.0002453681,0.00337783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007244704,"about_ca_system_score_gemma":0.00008818458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001910573,"about_ca_topic_score_gemma":0.000006278282,"domain_scores_codex":[0.9990932,0.00006104265,0.0002337772,0.0002080075,0.0001706739,0.0002333478],"domain_scores_gemma":[0.9986086,0.000314092,0.0000957491,0.0009110015,0.00001628279,0.00005423541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000003270368,0.0000433464,0.00002707758,0.00840573,0.0005163824,0.00008835544,0.0000228867,1.87862e-8,3.628671e-9,0.0005146659,0.1540058,0.8363725],"study_design_scores_gemma":[0.0002937216,0.00004143908,0.0001151462,0.01336736,0.001888331,0.00007544875,0.000003759729,2.641921e-7,1.195102e-7,0.0001128729,0.9840161,0.00008547561],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000002650485,0.9897772,1.483857e-7,0.001972996,0.0002248036,0.000750202,0.00008297063,0.0001631423,0.007025856],"genre_scores_gemma":[0.000002174337,0.9934664,0.00001670475,0.0004106373,0.002731157,0.0003377214,0.0001595343,0.00005688733,0.002818731],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.836287,"threshold_uncertainty_score":0.9973981,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2560113207","doi":"10.1038/nmicrobiol.2016.245","title":"Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster","year":2016,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":206,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Social Sciences and Humanities Research Council of Canada; Lékařská fakulta, Masarykova univerzita; Masarykova Univerzita; Universität Zürich; Generalitat Valenciana","keywords":"Treponema; Biology; Pandemic; Syphilis; Genome; Phylogenetic tree; Virology; Infectious disease (medical specialty); Antibiotic resistance; Evolutionary biology; Genetics; Antibiotics; Disease; Gene; Coronavirus disease 2019 (COVID-19); Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01582255084771906,"gpt":0.2916581227214297,"spread":0.2758355718737107,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001063574,0.0001299125,0.0004214358,0.00008383825,0.00001286313,7.812707e-7,0.00006108265,0.0003673546,0.0002412952],"category_scores_gemma":[0.00008593104,0.00007037567,0.00008629099,0.00007231638,0.0001668267,0.00001999574,0.0000452439,0.0001253748,0.000006331356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001956042,"about_ca_system_score_gemma":0.00003951985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001366644,"about_ca_topic_score_gemma":0.00006069223,"domain_scores_codex":[0.99921,0.00004163005,0.0002792099,0.0002615573,0.00004263959,0.0001649754],"domain_scores_gemma":[0.9993145,0.0001649074,0.0001281423,0.0002413748,0.0001017344,0.0000493534],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001746785,0.0001652613,0.2757483,0.00005861144,0.0001498298,0.000007318044,0.0001251205,1.541084e-7,0.7108665,0.0001831908,0.001915435,0.01060569],"study_design_scores_gemma":[0.01444907,0.002493003,0.3032271,0.001165559,0.0007719825,0.001377289,0.00008567444,0.00001971395,0.6408265,0.002488946,0.03257508,0.0005201196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890803,0.008689281,0.0000510758,0.001494965,0.000147281,0.0002383735,0.0001246089,0.00001490219,0.0001591775],"genre_scores_gemma":[0.9979333,0.001127947,0.0003112455,0.0003010836,0.00004702335,0.00001210091,0.00002155253,0.00001065563,0.0002350812],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07003998,"threshold_uncertainty_score":0.2869837,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2025761378","doi":"10.1503/cmaj.061616","title":"Canadian guidelines on sexually transmitted infections, 2006","year":2007,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":194,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true},"ca_institutions":"Izaak Walton Killam Health Centre","funders":"","keywords":"Medicine; Public health; Family medicine; Sexually active; Library science; World Wide Web; Computer science; Human immunodeficiency virus (HIV); Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.01672718478109825,"gpt":0.2963556632748316,"spread":0.2796284784937334,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002067258,0.0001573981,0.0002552786,0.0004681757,0.0003568625,0.00005974254,0.00009496565,0.0004344227,0.005022673],"category_scores_gemma":[0.002623271,0.0001341246,0.0001385593,0.0003543451,0.00001920066,0.00006063492,0.000002426403,0.000749207,0.0003744694],"about_ca_system_candidate":true,"about_ca_system_consensus":true,"about_ca_system_score_codex":0.004617642,"about_ca_system_score_gemma":0.007854149,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3158282,"about_ca_topic_score_gemma":0.9630961,"domain_scores_codex":[0.9972861,0.00005723514,0.0005832919,0.0001744325,0.001182672,0.0007163134],"domain_scores_gemma":[0.9940561,0.0002013573,0.0001198646,0.000121227,0.0007548518,0.004746567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000009760681,0.0001096282,0.4772907,0.000003640615,0.000214974,0.001824061,0.0001011953,0.000003305969,0.000002495837,0.0002263449,0.4221978,0.09801613],"study_design_scores_gemma":[0.001245686,0.0002134065,0.2933846,0.00009428681,0.0000577575,0.0006191766,0.0001301705,0.00002437537,0.00002145319,0.00006361044,0.7040359,0.0001095645],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6486066,0.0007264842,0.00009306189,0.3155085,0.001942868,0.0003458372,0.00008277033,0.0000497122,0.03264419],"genre_scores_gemma":[0.8888298,0.000320913,0.0002204329,0.1042162,0.003800115,0.00001028069,0.00005965011,0.00003563659,0.002506984],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6472679,"threshold_uncertainty_score":0.9992034,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2328737085","doi":"10.1097/iae.0b013e3182993f11","title":"SPECTRAL DOMAIN OPTICAL COHERENCE TOMOGRAPHY FINDINGS IN PATIENTS WITH ACUTE SYPHILITIC POSTERIOR PLACOID CHORIORETINOPATHY","year":2013,"lang":"en","type":"article","venue":"Retina","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":183,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Herzig Eye Institute","funders":"","keywords":"Medicine; Chorioretinitis; Ophthalmology; Fundus (uterus); Retinal pigment epithelium; Optical coherence tomography; External limiting membrane; Fluorescein angiography; Retinal; Neurosyphilis; Syphilis","retraction":null,"screen_n_in":null,"score":{"opus":0.005145140850902116,"gpt":0.2192830685955617,"spread":0.2141379277446596,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009129867,0.000253223,0.0003966941,0.0001589147,0.00004826732,0.00004607024,0.00009921342,0.00009985839,0.0004198114],"category_scores_gemma":[0.00003414333,0.0001777766,0.00009678775,0.000302802,0.0001444922,0.0001086634,0.00003974376,0.0002075353,0.0001682135],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001463361,"about_ca_system_score_gemma":0.0000478068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008366429,"about_ca_topic_score_gemma":0.00001031893,"domain_scores_codex":[0.9983713,0.00003349306,0.0002946948,0.0004217911,0.0003824324,0.0004962813],"domain_scores_gemma":[0.9992042,0.00007753984,0.00005310536,0.0003226492,0.00009366122,0.0002488538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003062454,0.0007489151,0.9965118,0.00003235636,0.00007833829,0.0001935981,0.0002962377,1.133261e-7,0.0004400876,0.0002176808,0.0001594234,0.001015163],"study_design_scores_gemma":[0.003960662,0.002597102,0.9903085,0.000301843,0.0001073245,0.0000581948,0.00007603897,0.000003123188,0.002165251,0.0001687112,0.00005453183,0.0001987296],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950879,0.00006703941,0.000001750789,0.001041825,0.00006497582,0.001360749,0.00001730072,0.00005333395,0.002305133],"genre_scores_gemma":[0.997931,0.00001101451,0.001386286,0.0002451356,0.00005319587,0.0002157976,0.00006726974,0.00002935622,0.00006095173],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006203353,"threshold_uncertainty_score":0.7249519,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2044378923","doi":"10.1371/journal.pone.0054695","title":"Are Treponema pallidum Specific Rapid and Point-of-Care Tests for Syphilis Accurate Enough for Screening in Resource Limited Settings? Evidence from a Meta-Analysis","year":2013,"lang":"en","type":"review","venue":"PLoS ONE","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":146,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Institut National de Santé Publique du Québec; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Meta-analysis; Treponema; Syphilis; Internal medicine; Point-of-care testing; Gastroenterology; Immunology; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.5099777232417295,"gpt":0.3822390437583075,"spread":0.127738679483422,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005919494,0.0008101002,0.008435111,0.0007968433,0.00009652808,0.00009669399,0.0002759573,0.0004194165,0.0003090872],"category_scores_gemma":[0.00248429,0.0005792993,0.002939444,0.0009771421,0.00007740277,0.0001595705,0.0001234285,0.0003107764,0.00001125692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001374586,"about_ca_system_score_gemma":0.00007761924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007081559,"about_ca_topic_score_gemma":0.0001063182,"domain_scores_codex":[0.9956442,0.0002707208,0.001660479,0.001338831,0.0005875028,0.0004982469],"domain_scores_gemma":[0.9890023,0.007065834,0.001981229,0.001195482,0.0005214606,0.0002337191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.0004520738,0.004037912,0.003846684,0.08144049,0.5213438,0.00013517,0.001488399,0.000004230871,0.00002943334,0.000009999597,0.002683383,0.3845284],"study_design_scores_gemma":[0.001762364,0.0007745398,0.001260727,0.04754492,0.7859334,0.000005573176,0.0003852232,0.00008249579,0.0002350664,0.00001588391,0.1613129,0.0006869118],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001945372,0.9866177,0.00003774603,0.001274804,0.00001292123,0.007967129,0.00207343,0.00005114555,0.00001978961],"genre_scores_gemma":[0.0007288227,0.9663118,0.02385179,0.0001613527,0.0002347484,0.006342635,0.0020623,0.0001355311,0.0001710795],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.3838415,"threshold_uncertainty_score":0.9996659,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3215251541","doi":"10.1038/s41564-021-01000-z","title":"Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis","year":2021,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":135,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; University of Alberta; Alberta Hospital Edmonton; BC Centre for Disease Control","funders":"European and Developing Countries Clinical Trials Partnership; Programme Development Grants; National Health and Medical Research Council; National Institute of Allergy and Infectious Diseases; Medical Research Council; Centers for Disease Control and Prevention; Queensland Government; Public Health England; Medical Research Foundation; National Institute for Health and Care Research; Instituut voor Tropische Geneeskunde; UK Research and Innovation; Sahlgrenska Universitetssjukhuset; Wellcome Trust; Alberta Precision Laboratories; Wellcome; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Treponema; Biology; Population; Syphilis; Phylogenetics; Phylogenetic tree; Evolutionary biology; Genome; Molecular epidemiology; Population bottleneck; Zoology; Genetics; Virology; Demography; Gene; Genotype; Microsatellite","retraction":null,"screen_n_in":null,"score":{"opus":0.01815880124741696,"gpt":0.2952815600711994,"spread":0.2771227588237825,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001364626,0.0001726715,0.0006995203,0.00005236905,0.00002061344,0.000002650841,0.00005619067,0.0005067098,0.0001255177],"category_scores_gemma":[0.0002573627,0.0001294554,0.0001245354,0.0002019552,0.0001472433,0.00001739348,0.00008163117,0.0001748829,0.000002437302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004345124,"about_ca_system_score_gemma":0.0001460012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000268506,"about_ca_topic_score_gemma":0.0000466665,"domain_scores_codex":[0.9988644,0.0001170283,0.0004271988,0.0003642259,0.00006396824,0.0001632093],"domain_scores_gemma":[0.9989128,0.0001519938,0.0002026917,0.0003377225,0.0003240049,0.00007084095],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002423549,0.0006847797,0.1990617,0.0001810353,0.0003168989,0.000187101,0.00008440953,3.046871e-7,0.7866797,0.0002767069,0.007658871,0.004626041],"study_design_scores_gemma":[0.003305955,0.0007844548,0.3315213,0.0004354653,0.0002175964,0.0007659013,0.0001510471,7.780021e-7,0.6404215,0.0001979353,0.02204679,0.0001512387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9217096,0.07469067,0.000002786697,0.001846521,0.0002378003,0.0002763062,0.0004645459,0.00001464053,0.0007571175],"genre_scores_gemma":[0.9944512,0.003383142,0.0007176276,0.000806823,0.00007547165,0.000008819353,0.0004586498,0.00001023794,0.00008802058],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1462582,"threshold_uncertainty_score":0.5279037,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2970886640","doi":"10.1093/cid/ciz866","title":"Doxycycline Prophylaxis for Bacterial Sexually Transmitted Infections","year":2019,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":133,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Doxycycline; Medicine; Pre-exposure prophylaxis; Sexually transmitted disease; Immunology; Virology; Intensive care medicine; Microbiology; Antibiotics; Syphilis; Human immunodeficiency virus (HIV); Men who have sex with men","retraction":null,"screen_n_in":null,"score":{"opus":0.1132167653324497,"gpt":0.4431224156323168,"spread":0.3299056502998671,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002903876,0.0007611613,0.004219739,0.0002788283,0.0001587928,0.00009409456,0.0001639682,0.0008888956,0.0005526136],"category_scores_gemma":[0.001974559,0.0005439044,0.00386957,0.0004062948,0.0002049412,0.00007942973,0.00004641977,0.0005697126,0.000492323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002271174,"about_ca_system_score_gemma":0.001419607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001606599,"about_ca_topic_score_gemma":0.00001898367,"domain_scores_codex":[0.9959098,0.0003379656,0.001901842,0.00110493,0.0002590998,0.000486391],"domain_scores_gemma":[0.9932186,0.004341119,0.0005887244,0.0009795659,0.0002669527,0.0006050314],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007322667,0.009714577,0.01464293,0.01994282,0.002510142,0.00003616026,0.000004798623,5.201571e-7,1.055653e-7,0.00005553999,0.004808458,0.9482107],"study_design_scores_gemma":[0.004154881,0.007651094,0.004752791,0.005879187,0.01696352,0.00004634168,0.000001876787,0.000003798712,2.108806e-7,0.0001000555,0.9599236,0.0005226857],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001960857,0.9839253,0.0001095238,0.0000835397,0.003717851,0.007819886,0.001588084,0.0004586966,0.0003362417],"genre_scores_gemma":[0.002516323,0.9868975,0.00002635502,0.0002669821,0.003667645,0.00287837,0.003145372,0.0001808994,0.0004206056],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9551151,"threshold_uncertainty_score":0.9997013,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3205553071","doi":"10.1136/bmj.l4159","title":"Syphilis","year":2019,"lang":"de","type":"article","venue":"BMJ","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Ottawa Hospital; Ottawa Public Health; University of Ottawa","funders":"","keywords":"Syphilis; Treponema; Medicine; Sex organ; Infectivity; Sexual contact; Primary Syphilis; Immunology; Dermatology; Gynecology; Human immunodeficiency virus (HIV); Biology; Virus","retraction":null,"screen_n_in":null,"score":{"opus":0.02690498815850874,"gpt":0.3150152709253493,"spread":0.2881102827668405,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000237582,0.0002134676,0.0004135197,0.00007507098,0.00003732993,0.00002972232,0.00009696333,0.0001438025,0.007788874],"category_scores_gemma":[0.0001067668,0.0001715163,0.0002018467,0.0001418207,0.00003594265,0.00004826715,0.00006083196,0.0001410653,0.06840747],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001249422,"about_ca_system_score_gemma":0.0001242604,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009992535,"about_ca_topic_score_gemma":0.000005198911,"domain_scores_codex":[0.9985345,0.00004743187,0.0003362825,0.0003707917,0.0003546086,0.0003563653],"domain_scores_gemma":[0.9987361,0.0001565819,0.0001032163,0.0007416678,0.00006583533,0.0001965977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001008364,0.00102409,0.6485384,0.0001950683,0.001132929,0.0003056878,0.0004623097,0.000006140026,0.00007556582,0.002157027,0.3244112,0.02159081],"study_design_scores_gemma":[0.003272295,0.0007641684,0.2676921,0.0006141167,0.0008422294,0.00001401157,0.0001533616,0.0001198752,0.001038066,0.0001174194,0.7251244,0.0002480573],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7506968,0.0836321,0.000002343667,0.0368787,0.007902965,0.002873234,0.00006221455,0.0001049844,0.1178466],"genre_scores_gemma":[0.9790018,0.00184038,0.0001027423,0.002168995,0.002983899,0.00008201575,0.00007081158,0.00004114503,0.01370822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4007132,"threshold_uncertainty_score":0.9931182,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2113101607","doi":"10.1128/jcm.02555-10","title":"Treponema-Specific Tests for Serodiagnosis of Syphilis: Comparative Evaluation of Seven Assays","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Syphilis; Treponema; Serology; Rapid plasma reagin; Gold standard (test); Immunoassay; Medicine; Virology; Antibody; Immunology; Biotechnology; Biology; Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.4858139836039234,"gpt":0.4918132137884098,"spread":0.005999230184486337,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003683852,0.0001438955,0.001426618,0.0001487026,0.00001985984,0.000001879844,0.0001326175,0.0002324618,0.0003962142],"category_scores_gemma":[0.00161748,0.0000979462,0.0006368079,0.0001102351,0.000248108,0.00004987361,0.00002605229,0.0002014629,0.000008252813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005408955,"about_ca_system_score_gemma":0.0002791203,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007783889,"about_ca_topic_score_gemma":0.00001901718,"domain_scores_codex":[0.9967929,0.0004879896,0.002221774,0.000198244,0.0001408807,0.0001581727],"domain_scores_gemma":[0.993174,0.00257893,0.001986552,0.0002473851,0.001903127,0.0001100154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006345936,0.01694608,0.8453701,0.0001879104,0.003992684,0.00003058439,0.002729295,0.00003264588,0.05321913,0.0005163434,0.03360905,0.03702025],"study_design_scores_gemma":[0.01510366,0.01289306,0.8928983,0.0005928638,0.002257041,0.0003569054,0.0004388033,0.00003460768,0.06845584,0.001413124,0.00540298,0.0001528175],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956949,0.002108767,0.00005558458,0.0004910183,0.0005370487,0.0005932563,0.00008044775,0.000003653083,0.000435263],"genre_scores_gemma":[0.9948367,0.0005549556,0.004188095,0.0001163211,0.0002386128,0.00002117231,0.00002104102,0.00001060109,0.00001248965],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04752819,"threshold_uncertainty_score":0.4338267,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2417174367","doi":"10.1001/jama.2016.4114","title":"Screening for Syphilis","year":2016,"lang":"en","type":"review","venue":"JAMA","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Medicine; Syphilis; Observational study; Men who have sex with men; Data extraction; Transmission (telecommunications); MEDLINE; Pediatrics; Family medicine; Human immunodeficiency virus (HIV); Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.1195856573561071,"gpt":0.3944344551408426,"spread":0.2748487977847354,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001473897,0.0002863607,0.001408304,0.0001215352,0.0000469039,0.00002719132,0.00009150959,0.000289362,0.0003020134],"category_scores_gemma":[0.0002462215,0.000155576,0.0008744149,0.00008527928,0.00002384483,0.00003753986,0.00003604968,0.0001121356,0.0002353595],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001140836,"about_ca_system_score_gemma":0.0001194194,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005351746,"about_ca_topic_score_gemma":0.000001018868,"domain_scores_codex":[0.9988713,0.00002526004,0.0003485008,0.000350299,0.0001563478,0.0002482662],"domain_scores_gemma":[0.9987109,0.0005071554,0.0001629639,0.0004193312,0.00006724778,0.0001324003],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000008724436,0.00007197128,0.00001498698,0.006534784,0.0003956316,0.00002539237,0.00000539835,1.613187e-9,2.078614e-8,0.0002812489,0.02118507,0.9714768],"study_design_scores_gemma":[0.001339959,0.0001677939,0.00003095651,0.04667574,0.001657379,0.00007151856,0.000001967267,3.2636e-7,0.000001592748,0.00003623531,0.9498658,0.000150751],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[6.222703e-7,0.9941089,0.0001294896,0.0007638327,0.0001849603,0.001673785,0.0002151622,0.00005879634,0.002864503],"genre_scores_gemma":[0.000002274254,0.9931236,0.001032577,0.000234887,0.001579319,0.001084632,0.0002581521,0.00007270113,0.002611888],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.971326,"threshold_uncertainty_score":0.6344205,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2793035228","doi":"10.14745/ccdr.v44i02a02","title":"Infectious and congenital syphilis in Canada, 2010–2015","year":2018,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":true},"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Syphilis; Congenital syphilis; Demography; Medicine; Gonorrhea; Chlamydia; Public health; Population; Pediatrics; Environmental health; Immunology; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.0150823577096066,"gpt":0.2541977738842569,"spread":0.2391154161746503,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001327441,0.0001763284,0.0003530103,0.00005438934,0.0001323232,0.00001696669,0.0001022319,0.00003336602,0.0002055135],"category_scores_gemma":[0.0003196555,0.0001625394,0.00003254266,0.0001950102,0.0001186575,0.00005519,0.0001260756,0.0001551968,0.000002067069],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001675738,"about_ca_system_score_gemma":0.01481838,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9997109,"about_ca_topic_score_gemma":0.9999751,"domain_scores_codex":[0.9986538,0.00004912501,0.0003601696,0.0002643705,0.0003554582,0.0003170511],"domain_scores_gemma":[0.9978372,0.0001085564,0.00009416786,0.001057927,0.0002209166,0.0006812269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004682564,0.0001182744,0.9331195,0.00002525326,0.0001102363,0.00860218,0.00002103125,0.000002160555,0.000005201227,0.00002443431,0.05714603,0.0007789166],"study_design_scores_gemma":[0.001049765,0.00004763509,0.9432051,0.0000821237,0.0001407005,0.0005689983,0.0001505386,0.0001167916,0.00005815476,0.00002737614,0.0543842,0.0001686167],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850199,0.004392988,3.431421e-7,0.003464053,0.0002899349,0.0003554792,0.00006047764,0.00001898369,0.006397884],"genre_scores_gemma":[0.9976324,0.0002155365,0.00001732931,0.001163142,0.00007623459,0.00006812035,0.0001189078,0.00002192945,0.0006863935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01314264,"threshold_uncertainty_score":0.9907667,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1939457881","doi":"10.1093/pch/5.8.463","title":"Congenital syphilis: A guide to diagnosis and management","year":2000,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Congenital syphilis; Syphilis; Pediatrics; Cerebral palsy; Hydrocephalus; Deformity; Pregnancy; Disease; Surgery; Physical therapy; Human immunodeficiency virus (HIV); Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.01556253055181511,"gpt":0.2996873952082304,"spread":0.2841248646564153,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003004403,0.0002393652,0.0004235987,0.0002297311,0.0002218715,0.00003587368,0.0000837697,0.00006592164,0.0005336395],"category_scores_gemma":[0.00004128027,0.0002070714,0.0001041294,0.0004454334,0.00002866762,0.00005302339,0.00006070387,0.000141199,0.0003469993],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002309693,"about_ca_system_score_gemma":0.00007077924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003751923,"about_ca_topic_score_gemma":0.000113648,"domain_scores_codex":[0.9980929,0.00004464827,0.0004516123,0.0005142511,0.00037311,0.0005234159],"domain_scores_gemma":[0.9986353,0.0001017121,0.00006201893,0.0003920597,0.00004418022,0.0007647651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.00009262272,0.001212199,0.4163331,0.0003412351,0.0002412984,0.0001643561,0.0008362178,0.000008332386,1.420062e-7,0.001065506,0.1147236,0.4649814],"study_design_scores_gemma":[0.002280306,0.0008147506,0.5911471,0.0001274243,0.0002111218,0.00006623786,0.00009563517,0.00001001018,0.000009413686,0.00005683558,0.404984,0.0001971537],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8221485,0.03573579,0.00002602754,0.09342911,0.000301481,0.004002925,0.0001329919,0.0002461796,0.04397701],"genre_scores_gemma":[0.8293719,0.1330442,0.003832002,0.03096043,0.0008521823,0.0007413822,0.00007967318,0.00006203254,0.001056182],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4647842,"threshold_uncertainty_score":0.8444127,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2101088631","doi":"10.1093/cid/cis928","title":"A Dual Point-of-Care Test Shows Good Performance in Simultaneously Detecting Nontreponemal and Treponemal Antibodies in Patients With Syphilis: A Multisite Evaluation Study in China","year":2012,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":94,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"SKiN Health","funders":"","keywords":"Medicine; Syphilis; Treponema; Point-of-care testing; Point of care; Internal medicine; Antibody; Latex fixation test; Syphilis Serodiagnosis; Immunology; Pathology; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.02195682048365794,"gpt":0.339429017991882,"spread":0.3174721975082241,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006391006,0.0002534387,0.0007633885,0.000280707,0.00005740839,0.00001948169,0.00003765862,0.00009959059,0.00002138899],"category_scores_gemma":[0.003441361,0.0001942952,0.00008534574,0.0003359739,0.0001089765,0.0002557276,0.00005743458,0.0002454659,0.00000271987],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001826811,"about_ca_system_score_gemma":0.00007896424,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003024508,"about_ca_topic_score_gemma":0.003535604,"domain_scores_codex":[0.9976584,0.0002811973,0.0008871852,0.0004383024,0.0003872183,0.0003477254],"domain_scores_gemma":[0.9976497,0.001478076,0.0002443481,0.0002781533,0.0001653834,0.0001843137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007326679,0.0196743,0.9580786,0.0001600447,0.00007268611,0.00006555601,0.001882807,0.0003910092,0.000002261364,4.695276e-7,3.953659e-7,0.01893927],"study_design_scores_gemma":[0.01741195,0.007590108,0.9710014,0.0007010153,0.0003664604,0.000006845476,0.0008682865,0.001850683,0.00001393472,0.000002514427,4.736584e-7,0.0001863167],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966342,0.0007788444,5.528235e-7,0.00001505074,0.00009514167,0.002341832,0.00002547465,0.00003596863,0.00007296776],"genre_scores_gemma":[0.9995381,0.00006474314,0.0000147886,0.00002830766,0.00008558377,0.0002071365,0.00003500556,0.00002493086,0.000001453333],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01875295,"threshold_uncertainty_score":0.792313,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2029913194","doi":"10.1016/j.vaccine.2013.09.053","title":"Current status of syphilis vaccine development: Need, challenges, prospects","year":2013,"lang":"en","type":"article","venue":"Vaccine","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Syphilis; Treponema; Immunology; Medicine; Public health; Infectious disease (medical specialty); Disease; Sexually transmitted disease; Transmission (telecommunications); HIV vaccine; Virology; Vaccination; Human immunodeficiency virus (HIV); Vaccine trial; Internal medicine; Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.03188753735147667,"gpt":0.2768661923122737,"spread":0.244978654960797,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001020667,0.0002884721,0.0005992136,0.000219392,0.00005290917,0.00001346351,0.0001009819,0.00007819789,0.001518292],"category_scores_gemma":[0.0001046338,0.0002106984,0.0001054432,0.000268944,0.000005689713,0.000121162,0.00008575999,0.0001501687,0.000377779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001777393,"about_ca_system_score_gemma":0.0001515001,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001651379,"about_ca_topic_score_gemma":0.00006354189,"domain_scores_codex":[0.9981356,0.00002001729,0.0005507106,0.0003967043,0.0003410856,0.0005558729],"domain_scores_gemma":[0.9986079,0.00006030473,0.0001672026,0.0005033122,0.000286503,0.0003748281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00016151,0.003277408,0.5127932,0.0007088921,0.0004656168,0.00002907059,0.001323649,0.000002239843,0.0009232563,0.001341313,0.01253238,0.4664414],"study_design_scores_gemma":[0.005153449,0.0004956859,0.8754997,0.0003727667,0.0001237835,0.00002336346,0.0001278629,0.00002160395,0.0103339,0.0001672555,0.1074833,0.0001972653],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9265392,0.06672252,0.000006491434,0.003065575,0.0002565323,0.001398176,0.000008125095,0.0001068528,0.001896525],"genre_scores_gemma":[0.9822848,0.01590726,0.0008772942,0.0001070025,0.0002029033,0.0003121205,0.00008614696,0.0000425297,0.0001798878],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4662442,"threshold_uncertainty_score":0.9993945,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2584979154","doi":"10.1038/ncomms14273","title":"A defined syphilis vaccine candidate inhibits dissemination of Treponema pallidum subspecies pallidum","year":2017,"lang":"en","type":"article","venue":"Nature Communications","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; University of Toronto; Michael Smith Health Research BC; University of Washington; U.S. Department of Agriculture","keywords":"Treponema; Syphilis; Virology; Immunology; Biology; Parasitology; Medicine; Zoology","retraction":null,"screen_n_in":null,"score":{"opus":0.02959629333684567,"gpt":0.3505647091939372,"spread":0.3209684158570916,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002165337,0.000192227,0.000404597,0.0001466169,0.0005499262,0.00006132996,0.0007155549,0.0002591826,0.00009301648],"category_scores_gemma":[0.001395071,0.0001555276,0.0001649377,0.0001614073,0.0001445641,0.0001520072,0.0003342312,0.0004595847,0.00001604095],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009828265,"about_ca_system_score_gemma":0.00007424897,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001845716,"about_ca_topic_score_gemma":0.004018597,"domain_scores_codex":[0.9988208,0.00005878755,0.0004032964,0.0002402482,0.0002864847,0.0001903955],"domain_scores_gemma":[0.9947468,0.0004440578,0.0004217359,0.003850708,0.0004218655,0.0001148541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001302415,0.002373003,0.9360213,0.0001093385,0.0004816821,0.00001565034,0.001280736,0.000001050631,0.008242161,0.02702032,0.01627417,0.008050364],"study_design_scores_gemma":[0.001166643,0.0001368445,0.9661198,0.0004577913,0.0003069717,0.00002474075,0.0001651358,0.00006453437,0.01703314,0.0002200067,0.0141574,0.0001469718],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9337174,0.009997327,0.000008183778,0.04530339,0.0001695815,0.0007205465,0.0002269318,0.00007857885,0.009778034],"genre_scores_gemma":[0.9923545,0.004713576,0.001608127,0.0001544825,0.00006719734,0.0001296269,0.0004847635,0.00002534262,0.0004623515],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0586371,"threshold_uncertainty_score":0.6342232,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148403797","doi":"10.1128/iai.71.5.2525-2533.2003","title":"Identification of a<i>Treponema pallidum</i>Laminin-Binding Protein","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; University of Washington","keywords":"Laminin; Biology; Bacterial adhesin; Extracellular matrix; Treponema; Basement membrane; Microbiology; Cell biology; Molecular biology; Virulence; Biochemistry; Virology; Gene; Syphilis","retraction":null,"screen_n_in":null,"score":{"opus":0.0285289785651933,"gpt":0.2927094707889662,"spread":0.2641804922237729,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000258754,0.00006667493,0.0001294029,0.00007814273,0.00008759886,0.0000120802,0.00001106236,0.00004664345,0.00009364903],"category_scores_gemma":[0.0002126393,0.00005707663,0.0000432728,0.0001284381,0.00003837571,0.00005761153,0.000007712281,0.00007684452,0.0000136954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000327333,"about_ca_system_score_gemma":0.00002215754,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001318189,"about_ca_topic_score_gemma":0.00001667815,"domain_scores_codex":[0.9994695,0.00007565701,0.0002100563,0.00009201256,0.00008248896,0.0000702734],"domain_scores_gemma":[0.9995847,0.00003168597,0.0001026654,0.0001715138,0.00007162171,0.00003785542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003327013,0.001026014,0.6213319,0.0001219947,0.0001087361,0.000003522646,0.0003569378,9.509287e-7,0.3656183,0.002412745,0.00006508933,0.008920617],"study_design_scores_gemma":[0.0008187152,0.0002220748,0.5073409,0.00007310267,0.0000555209,0.00003760639,0.00008690129,0.000008144112,0.4894747,0.000135582,0.00169261,0.00005409196],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965636,0.000114334,0.00005991087,0.00006928195,0.00007917955,0.0002961639,0.000002410381,0.00002602599,0.002789102],"genre_scores_gemma":[0.9992424,0.000142524,0.00004885381,0.00001767464,0.000009775407,0.00004336633,0.000009148144,0.000006027071,0.0004801816],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1238565,"threshold_uncertainty_score":0.2327517,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2789118395","doi":"10.1136/practneurol-2017-001754","title":"Neurosyphilis in patients with HIV","year":2018,"lang":"en","type":"review","venue":"Practical Neurology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Lawson Foundation","funders":"National Institute for Health and Care Research","keywords":"Neurosyphilis; Medicine; Syphilis; Lumbar puncture; Human immunodeficiency virus (HIV); Asymptomatic; Coinfection; Paresis; Pediatrics; Gold standard (test); Immunosuppression; Intensive care medicine; Surgery; Internal medicine; Immunology; Cerebrospinal fluid","retraction":null,"screen_n_in":null,"score":{"opus":0.06301838981754684,"gpt":0.3706168734735482,"spread":0.3075984836560014,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001142646,0.0004051128,0.001653818,0.0002264308,0.00002883079,0.00001561989,0.00009409776,0.0003944266,0.0003097545],"category_scores_gemma":[0.0008009328,0.0002519478,0.0002047102,0.0002859401,0.000166616,0.00006919339,0.00009609522,0.0008799936,0.0007608514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004503957,"about_ca_system_score_gemma":0.0002103983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006141906,"about_ca_topic_score_gemma":0.000007261063,"domain_scores_codex":[0.99772,0.0003448621,0.0004995322,0.0007461468,0.0002706223,0.0004188204],"domain_scores_gemma":[0.997911,0.001006831,0.0002257617,0.0005840525,0.00007702738,0.0001952811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002449298,0.01557027,0.2423458,0.008665665,0.0008747629,0.007529186,0.00004274277,1.535792e-7,1.341235e-8,0.0008197113,0.02116329,0.7005391],"study_design_scores_gemma":[0.001649909,0.003519496,0.02532915,0.0007491369,0.001141894,0.0003319127,2.105179e-7,9.663484e-7,4.948489e-8,0.00001268578,0.9670967,0.0001678851],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002288556,0.9880711,0.000002207921,0.004710534,0.0004079854,0.002305347,0.00003782637,0.00007405253,0.002102395],"genre_scores_gemma":[0.0003889527,0.9964097,0.0001158965,0.002334182,0.0002282876,0.0002133352,0.0001686898,0.00008654378,0.00005444393],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9459334,"threshold_uncertainty_score":0.9999933,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2101338065","doi":"10.1086/600878","title":"Macrolide Resistance and Molecular Types of<i>Treponema pallidum</i>Causing Primary Syphilis in Shanghai, China","year":2009,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"Health Canada","keywords":"Treponema; Syphilis; Medicine; China; Virology; Primary Syphilis; Microbiology; Early syphilis; Biology; Human immunodeficiency virus (HIV); Geography","retraction":null,"screen_n_in":null,"score":{"opus":0.01835616919370309,"gpt":0.333733540089676,"spread":0.3153773708959729,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001933438,0.0001829132,0.0006361678,0.0001081752,0.00004253189,0.0000207924,0.00004252054,0.0001109471,0.00003783732],"category_scores_gemma":[0.0006226414,0.0001547918,0.0002144386,0.000231458,0.0001540536,0.000063224,0.00002934066,0.0001486249,0.000004484857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006684009,"about_ca_system_score_gemma":0.00008745772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002872475,"about_ca_topic_score_gemma":0.00005104461,"domain_scores_codex":[0.9984799,0.0001082332,0.0006029108,0.0003992156,0.000189757,0.0002199773],"domain_scores_gemma":[0.9988579,0.0003401243,0.0001538187,0.0003577967,0.00006117363,0.0002291648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001722435,0.00266463,0.9842817,0.0001345104,0.0001088748,0.0006050268,0.00003761896,0.00001658806,0.0003260991,0.0004145564,0.0003880613,0.01085005],"study_design_scores_gemma":[0.002257073,0.0005994024,0.992201,0.0004407582,0.0003144673,0.00001410432,0.000006343201,0.00002095418,0.0003682343,0.003326065,0.0003142779,0.0001373273],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9851253,0.010062,0.00003089451,0.001058647,0.00008252332,0.0003799655,0.00002877081,0.0000735518,0.003158325],"genre_scores_gemma":[0.996033,0.001845584,0.00008025426,0.001834402,0.0001027613,0.00002122701,0.00002952046,0.00001702581,0.00003619976],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0109077,"threshold_uncertainty_score":0.6312228,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2043574317","doi":"10.1016/j.amjmed.2008.04.042","title":"Primary Syphilis: Serological Treatment Response to Doxycycline/Tetracycline versus Benzathine Penicillin","year":2008,"lang":"en","type":"article","venue":"The American Journal of Medicine","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; Alberta Health; University of Alberta; Public Health Agency of Canada","funders":"","keywords":"Doxycycline; Rapid plasma reagin; Medicine; Penicillin; Tetracycline; Serology; Syphilis; Internal medicine; Antibiotics; Gastroenterology; Immunology; Antibody; Treponema; Microbiology; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.06436951228654199,"gpt":0.3426145805159743,"spread":0.2782450682294323,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001437876,0.0003730928,0.001527219,0.0003148271,0.0001708473,0.000006042162,0.0003126874,0.00005456119,0.0003398795],"category_scores_gemma":[0.001319035,0.0001727482,0.000338037,0.0006127757,0.000989069,0.00006140901,0.00005620101,0.0003974541,0.00008685152],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005021439,"about_ca_system_score_gemma":0.0002931114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001205966,"about_ca_topic_score_gemma":0.000009614957,"domain_scores_codex":[0.9968779,0.0004154441,0.001050832,0.0002984111,0.0009387376,0.0004186606],"domain_scores_gemma":[0.9954808,0.002208052,0.0007176566,0.0006359305,0.0003094609,0.0006481422],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"observational","study_design_scores_codex":[0.4986144,0.009700201,0.08325513,0.00004825135,0.005049889,0.02022951,0.01347923,0.0006782976,0.03202381,0.00008515866,0.05206554,0.2847706],"study_design_scores_gemma":[0.03415646,0.1371976,0.7549774,0.0004365238,0.001763258,0.009766337,0.001684838,0.00003248574,0.00107946,0.0000536335,0.05852918,0.0003228777],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8618764,0.002174814,0.00005495836,0.1347096,0.0003903493,0.0004031977,0.000008612281,0.0000271668,0.0003549143],"genre_scores_gemma":[0.9829414,0.003917247,0.001272462,0.009661766,0.001772714,0.00002184903,0.00001091769,0.00003749815,0.0003640756],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6717222,"threshold_uncertainty_score":0.7044469,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2069646201","doi":"10.1097/qco.0b013e3282f44772","title":"Azithromycin resistance in Treponema pallidum","year":2008,"lang":"en","type":"review","venue":"Current Opinion in Infectious Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"","keywords":"Azithromycin; Treponema; Medicine; 23S ribosomal RNA; Syphilis; Penicillin; Antibiotic resistance; Virology; Antibiotics; Microbiology; Gene; Biology; Genetics; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.09596253535021197,"gpt":0.4072653771317366,"spread":0.3113028417815246,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006916015,0.000650913,0.002255562,0.0008394885,0.00006946913,0.00003248238,0.0001383079,0.0002419634,0.0001561183],"category_scores_gemma":[0.0002995243,0.0005347504,0.0007724657,0.0009689511,0.0001055755,0.00007972763,0.00005373804,0.0004783984,0.0001735285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009019338,"about_ca_system_score_gemma":0.0006848417,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003284568,"about_ca_topic_score_gemma":0.00008608391,"domain_scores_codex":[0.9969801,0.0002369996,0.001098892,0.000836843,0.0003863457,0.0004607615],"domain_scores_gemma":[0.9981791,0.0004375469,0.000367112,0.000691083,0.00005937871,0.0002657632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003217508,0.006928463,0.1428947,0.04306002,0.0001893687,0.0001675222,0.0001069845,0.000002079172,6.729501e-9,0.000406858,0.02189395,0.7843179],"study_design_scores_gemma":[0.001743729,0.0001204221,0.02932717,0.08203117,0.0002814224,0.00007711197,0.000005117685,7.477344e-7,5.784316e-8,0.0001458342,0.8858616,0.0004056153],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001169015,0.9933771,0.000001739072,0.00003394524,0.003311409,0.001959315,0.0002271776,0.0001285179,0.0008438674],"genre_scores_gemma":[0.0007364087,0.9956367,0.000007846281,0.0000117355,0.0007117513,0.00193283,0.0008556148,0.00007721969,0.00002986312],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8639677,"threshold_uncertainty_score":0.9997104,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149613009","doi":"10.1128/jcm.02392-08","title":"Molecular Characterization of Syphilis in Patients in Canada: Azithromycin Resistance and Detection of<i>Treponema pallidum</i>DNA in Whole-Blood Samples versus Ulcerative Swabs","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"Alberta Health Services; Alberta Health; Calgary Laboratory Services; Provincial Laboratory of Public Health; Capital District Health Authority; Public Health Agency of Canada","funders":"","keywords":"Syphilis; Treponema; Primary Syphilis; Latent Syphilis; Azithromycin; Medicine; Sexually transmitted disease; Treponematosis; Polymerase chain reaction; Antibiotics; Virology; Immunology; Biology; Microbiology; Gene; Human immunodeficiency virus (HIV); Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02523442865929519,"gpt":0.300255657328111,"spread":0.2750212286688158,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004485982,0.0001117527,0.0008289617,0.0001752611,0.000007475848,0.000002060493,0.00005196481,0.0001384063,0.000005470618],"category_scores_gemma":[0.0007327093,0.00009104362,0.00008128806,0.000183629,0.00006324341,0.00004954452,0.00001309153,0.0002388951,1.467325e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001616509,"about_ca_system_score_gemma":0.000327845,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.007436402,"about_ca_topic_score_gemma":0.3023097,"domain_scores_codex":[0.9978012,0.0002709625,0.001544413,0.0001708552,0.00007455543,0.0001379456],"domain_scores_gemma":[0.998455,0.0004096054,0.0008046183,0.0001066797,0.0001672856,0.00005684498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003134425,0.001009336,0.7574499,0.00002585986,0.00007790823,0.00007741841,0.000092133,0.000005459205,0.2348559,0.00001133148,0.00000437924,0.003255983],"study_design_scores_gemma":[0.01111996,0.00213909,0.9295545,0.0003863237,0.00006452569,0.0000109285,0.00003524014,0.000001854605,0.05652879,0.00003724229,0.00006365815,0.00005784722],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984673,0.0002736235,0.000005863144,0.0008310921,0.0001601897,0.0002153132,0.0000370325,8.698309e-7,0.000008667335],"genre_scores_gemma":[0.9993252,0.0003548875,0.0001109835,0.0001487747,0.00002731061,0.00000195904,0.00002414595,0.000005311135,0.000001402117],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2948733,"threshold_uncertainty_score":0.9991732,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2161468351","doi":"10.1128/jcm.01989-13","title":"Clinical Prediction and Diagnosis of Neurosyphilis in HIV-Infected Patients with Early Syphilis","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal; Public Health Agency of Canada; Centre Hospitalier de l’Université de Montréal; Ste. Anne's Hospital; Cégep de Lévis","funders":"","keywords":"Rapid plasma reagin; Medicine; Syphilis; Neurosyphilis; Treponema; Lumbar puncture; Titer; Gastroenterology; Internal medicine; Viremia; White blood cell; Immunology; Cerebrospinal fluid; Serology; Antibody; Virology; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.02803383569783239,"gpt":0.3273823665463864,"spread":0.299348530848554,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007807264,0.000174929,0.001249341,0.0001906298,0.00001920668,0.000009598884,0.00009621945,0.000327689,0.000200409],"category_scores_gemma":[0.001720359,0.0001084825,0.0002861382,0.0001652391,0.0003752002,0.0001355174,0.00005309302,0.0005848603,0.00001726371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002696448,"about_ca_system_score_gemma":0.00009818545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004273345,"about_ca_topic_score_gemma":0.00001688684,"domain_scores_codex":[0.9965791,0.0004037684,0.002417633,0.000280867,0.0001010158,0.0002176703],"domain_scores_gemma":[0.9959618,0.001980591,0.001032339,0.0002179405,0.0005685401,0.000238738],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006807798,0.003284997,0.9825575,0.00002187807,0.0002370072,0.00002292917,0.000035348,0.000001184571,0.0001197734,0.000006609346,0.001712801,0.0113192],"study_design_scores_gemma":[0.01088814,0.01012277,0.9768105,0.000288409,0.0002485559,0.00007775382,0.0000109234,0.000004887045,0.0001122564,0.00004391015,0.001314333,0.00007762504],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997276,0.0002755706,0.000005095297,0.00142526,0.0004277296,0.0004942493,0.0000460263,0.000007769324,0.00004227099],"genre_scores_gemma":[0.99744,0.001307778,0.0004537235,0.0004995103,0.0002318287,0.00001518056,0.00002288486,0.0000172925,0.00001184587],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01124157,"threshold_uncertainty_score":0.442379,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1582810658","doi":"10.1111/j.1365-2958.2011.07662.x","title":"TP0326, a <i>Treponema pallidum</i>β‐barrel assembly machinery A (BamA) orthologue and rare outer membrane protein","year":2011,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"Fogarty International Center; National Institute of Allergy and Infectious Diseases","keywords":"Treponema; Biology; Bacterial outer membrane; Bama; Spirochaete; Circular dichroism; Porin; Biogenesis; Antigenicity; Membrane protein; Biochemistry; Escherichia coli; Bacteria; Genetics; Membrane; Virology; Antibody; Syphilis; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01943841176133581,"gpt":0.2384623237329852,"spread":0.2190239119716494,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001652054,0.0003382227,0.0005682935,0.0001425969,0.00006622588,0.00001454109,0.0001079565,0.0003010736,0.0003072225],"category_scores_gemma":[0.00006633025,0.0002605099,0.0001810934,0.0001152164,0.0001714183,0.00003549012,0.0001325899,0.000230336,0.0001268214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003870938,"about_ca_system_score_gemma":0.00005224913,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001169533,"about_ca_topic_score_gemma":0.00005377502,"domain_scores_codex":[0.9983351,0.0001684907,0.0003502019,0.0006369669,0.00006480131,0.0004444637],"domain_scores_gemma":[0.9991006,0.00003141776,0.0001129771,0.0005070394,0.00007645031,0.000171474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002217258,0.0005914565,0.02338453,0.0000824947,0.0003507393,0.004265584,0.0003595969,2.61755e-7,0.9684073,0.0003323498,0.0004453551,0.001558654],"study_design_scores_gemma":[0.005405555,0.001590748,0.03344591,0.0002395301,0.0004772919,0.006003013,0.00007684748,0.000009458899,0.9388281,0.0001816414,0.0131651,0.0005767652],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933058,0.00237058,0.0002238745,0.001084941,0.0001093708,0.0009954273,0.00005734018,0.0000951298,0.001757532],"genre_scores_gemma":[0.9929267,0.00007178648,0.003477372,0.002574639,0.00004386088,0.0002458067,0.0002340323,0.00005093617,0.0003748686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02957911,"threshold_uncertainty_score":0.9999847,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2089355955","doi":"10.1097/olq.0b013e3181f07e91","title":"The Laboratory Impact of Changing Syphilis Screening From the Rapid-Plasma Reagin to a Treponemal Enzyme Immunoassay: A Case-study From the Greater Toronto Area","year":2010,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Toronto Public Health; Public Health Ontario; University of Guelph; Centre hospitalier universitaire de Québec; University of Toronto; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research","keywords":"Rapid plasma reagin; Syphilis; Medicine; Population; Serology; Asymptomatic; Latent Syphilis; Confidence interval; Immunoassay; Sexually transmitted disease; Immunology; Rate ratio; Treponematosis; Internal medicine; Antibody; Environmental health; Treponema","retraction":null,"screen_n_in":null,"score":{"opus":0.0194588499823517,"gpt":0.2851644778229163,"spread":0.2657056278405646,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004537534,0.0005061227,0.0006001591,0.00005902534,0.0006893134,0.0001675266,0.0004748047,0.0001113281,0.0006771469],"category_scores_gemma":[0.000278061,0.00022705,0.0004194597,0.0004035843,0.0002061165,0.0001608656,0.000073624,0.0003212565,0.000009977307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001082947,"about_ca_system_score_gemma":0.0002810317,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.05196176,"about_ca_topic_score_gemma":0.01900063,"domain_scores_codex":[0.9971679,0.0003734878,0.0005944468,0.000623925,0.0006423202,0.0005979033],"domain_scores_gemma":[0.9949931,0.002566138,0.0001759636,0.001675409,0.0002346346,0.0003547533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002394419,0.002805823,0.8934234,0.00001496657,0.005520125,0.002236417,0.04252639,0.00003854519,0.008867924,0.00001710412,0.00261922,0.03953568],"study_design_scores_gemma":[0.004191453,0.001239739,0.947171,0.0001623272,0.002341029,0.00007538527,0.04271977,0.0002809885,0.0009586707,0.00001528391,0.0005213835,0.0003229477],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872952,0.005190982,0.00004153826,0.002567161,0.0002340805,0.001958796,0.002546547,0.0001185003,0.00004716264],"genre_scores_gemma":[0.9977768,0.00007837712,0.00008961503,0.0007680776,0.0005167428,0.0004869062,0.0001826102,0.00007445089,0.00002639214],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05374763,"threshold_uncertainty_score":0.9989001,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2122527445","doi":"10.1136/sti.78.suppl_1.i139","title":"Geographical variations in the epidemiology of bacterial sexually transmitted infections in Manitoba, Canada","year":2002,"lang":"en","type":"article","venue":"Sexually Transmitted Infections","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"University of Manitoba; Manitoba Health","funders":"","keywords":"Epidemiology; Medicine; Gini coefficient; Incidence (geometry); Inequality; Environmental health; Lorenz curve; Demography; Epidemiological transition; Pathology; Economic inequality; Mathematics","retraction":null,"screen_n_in":null,"score":{"opus":0.03170089963543285,"gpt":0.2692929573174933,"spread":0.2375920576820604,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006074458,0.0003375438,0.0007252133,0.0006546315,0.0002051919,0.00001241197,0.000170894,0.0002862125,0.0008895614],"category_scores_gemma":[0.0004406392,0.0002692203,0.0002024076,0.001942767,0.0001875741,0.0001304539,0.00001118748,0.0007056847,0.00001089629],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002610733,"about_ca_system_score_gemma":0.0004001434,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3899557,"about_ca_topic_score_gemma":0.9203449,"domain_scores_codex":[0.9968212,0.0006796451,0.001134146,0.0004825217,0.0003078824,0.0005746125],"domain_scores_gemma":[0.996744,0.002291525,0.0001454908,0.0005192431,0.0001405475,0.0001591789],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004297303,0.005669484,0.9842396,0.00006107106,0.0003007324,0.00005398429,0.001522244,0.00028631,0.0001691981,0.003130472,0.001038464,0.0034854],"study_design_scores_gemma":[0.003871702,0.001019444,0.9872791,0.00007980088,0.0002833836,0.0002075207,0.0005050558,0.0006579008,0.0000268323,0.0006161361,0.005206946,0.0002461493],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9864737,0.000371868,0.0007999938,0.008285947,0.0005707562,0.001281746,0.0001414581,0.00007460669,0.001999859],"genre_scores_gemma":[0.9973096,0.0003243431,0.0001849001,0.001214985,0.0001674479,0.0005352814,0.0001968622,0.00003236731,0.00003420297],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5303892,"threshold_uncertainty_score":0.999976,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4214648207","doi":"10.14745/ccdr.v48i23a01","title":"Rising syphilis rates in Canada, 2011–2020","year":2022,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":true},"ca_institutions":"BC Centre for Disease Control; University of British Columbia; Ministry of Health and Long Term Care; Public Health Agency of Canada","funders":"Health Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Syphilis; Medicine; Demography; Outbreak; Public health; Men who have sex with men; Population; Infectious disease (medical specialty); Environmental health; Disease; Immunology; Virology; Human immunodeficiency virus (HIV); Internal medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01878636692643017,"gpt":0.2577455563914585,"spread":0.2389591894650283,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002557273,0.0001927772,0.0004345217,0.00005734497,0.0003456362,0.00001415776,0.0002591999,0.00001557779,0.001809924],"category_scores_gemma":[0.0001595123,0.0001957879,0.0000797242,0.0002500682,0.0000299782,0.00004386078,0.0003355544,0.0003421725,0.000001597454],"about_ca_system_candidate":true,"about_ca_system_consensus":true,"about_ca_system_score_codex":0.005835768,"about_ca_system_score_gemma":0.02709512,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9997106,"about_ca_topic_score_gemma":0.9997857,"domain_scores_codex":[0.9978694,0.0001427009,0.0005136767,0.0003267459,0.0007499958,0.0003975201],"domain_scores_gemma":[0.997546,0.0001735534,0.0001584921,0.001475035,0.00007587261,0.0005710842],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000756045,0.0002417956,0.823177,0.00003643742,0.00009875982,0.04607077,0.00002148385,0.0005838111,0.000006205903,0.00002422441,0.129069,0.0005949195],"study_design_scores_gemma":[0.001052722,0.00003532563,0.7796093,0.00007177914,0.0001565819,0.0005909452,0.0009916459,0.0005226923,0.0000564157,0.00004587534,0.2166153,0.0002514218],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9715004,0.01150229,2.627011e-7,0.01149956,0.0003086104,0.0004964553,0.0001824155,0.0000236918,0.004486286],"genre_scores_gemma":[0.9956504,0.0002033187,0.00002782978,0.002408502,0.00003644361,0.0002749315,0.0005732435,0.00003199066,0.000793386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08754635,"threshold_uncertainty_score":0.9991025,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064653945","doi":"10.1038/sj.eye.6702504","title":"Syphilitic acute posterior placoid chorioretinitis in nonimmunocompromised patients","year":2006,"lang":"es","type":"article","venue":"Eye","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"","keywords":"Chorioretinitis; Medicine; Ophthalmology; Syphilis; Virology","retraction":null,"screen_n_in":null,"score":{"opus":0.00671572779986594,"gpt":0.2563744444404062,"spread":0.2496587166405403,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001339195,0.0004370414,0.0007021921,0.0002391069,0.0001016396,0.0001004072,0.0001727071,0.0002117835,0.0008824125],"category_scores_gemma":[0.00005638359,0.0003980977,0.0002151585,0.0002809196,0.0001292281,0.0001145673,0.00009425057,0.0002672655,0.0009335379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004271843,"about_ca_system_score_gemma":0.0001137195,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00112888,"about_ca_topic_score_gemma":0.00005745229,"domain_scores_codex":[0.9974544,0.0001084326,0.0007396372,0.0005746383,0.0004334934,0.0006893756],"domain_scores_gemma":[0.9988576,0.0001600978,0.0001723981,0.0005363083,0.0001194904,0.0001540793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003288526,0.003209564,0.9876353,0.0001312787,0.0002214805,0.0005953409,0.0003189054,0.000001608004,0.0008713597,0.0002683209,0.001438391,0.004979611],"study_design_scores_gemma":[0.01221342,0.00111304,0.9762961,0.001044025,0.0003758215,0.00001170778,0.00004447519,0.0000238791,0.002978762,0.00008399572,0.005471566,0.0003431833],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861477,0.002298572,3.97083e-7,0.001142418,0.0007052555,0.001505048,0.0002552868,0.00006145608,0.007883862],"genre_scores_gemma":[0.9969752,0.0002767076,0.00009173853,0.0003226989,0.0004775127,0.000234496,0.0005376205,0.00006940235,0.001014567],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01188457,"threshold_uncertainty_score":0.9998471,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2045613902","doi":"10.1016/s0140-6736(03)12335-5","title":"Targeted mass treatment for syphilis with oral azithromycin","year":2003,"lang":"en","type":"article","venue":"The Lancet","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"BC Cancer Agency; BC Centre for Disease Control; University of British Columbia","funders":"British Columbia Centre for Disease Control","keywords":"Syphilis; Azithromycin; Medicine; Outbreak; Demography; Early syphilis; Virology; Human immunodeficiency virus (HIV); Antibiotics; Biology; Microbiology","retraction":null,"screen_n_in":null,"score":{"opus":0.05972043549032145,"gpt":0.3118595309753847,"spread":0.2521390954850632,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001246751,0.0001518792,0.0004179306,0.00002150107,0.00008759202,0.00001696184,0.00005845381,0.00003488215,0.0001789044],"category_scores_gemma":[0.00002957795,0.00006889337,0.00007931516,0.00009376969,0.00004749357,0.00002328116,0.000003630719,0.00004279884,0.00003455438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001109408,"about_ca_system_score_gemma":0.00005628945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004671622,"about_ca_topic_score_gemma":0.00005761874,"domain_scores_codex":[0.9992701,0.00003830893,0.0001073102,0.0001879074,0.0001187913,0.0002775988],"domain_scores_gemma":[0.999292,0.0001069852,0.00004005598,0.0004500659,0.00004241425,0.00006852225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004703993,0.003895819,0.7739618,0.0002352985,0.004276389,0.0002943718,0.002608268,0.0001293482,0.00341029,0.03827514,0.1346472,0.03356216],"study_design_scores_gemma":[0.03772274,0.007296629,0.1513788,0.0001858352,0.001393951,0.0001650092,0.0004503616,0.0001153969,0.05884434,0.00293447,0.7391006,0.0004118522],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9620123,0.002201752,0.0003433205,0.01906694,0.0001506187,0.002382982,0.000125888,0.0001540418,0.01356218],"genre_scores_gemma":[0.990775,0.0001795849,0.006071772,0.001008098,0.0002798156,0.0004607226,0.00005368896,0.00002631329,0.00114501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.622583,"threshold_uncertainty_score":0.280939,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1964216735","doi":"10.1186/1471-2458-13-606","title":"Screen more or screen more often? Using mathematical models to inform syphilis control strategies","year":2013,"lang":"en","type":"article","venue":"BMC Public Health","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"St. Michael's Hospital; Public Health Ontario; University of Toronto","funders":"Canadian Institutes of Health Research; University of Toronto","keywords":"Syphilis; Medicine; Population; Incidence (geometry); Biostatistics; Epidemiology; Latent Syphilis; Demography; Transmission (telecommunications); Public health; Environmental health; Immunology; Internal medicine; Telecommunications; Pathology","retraction":null,"screen_n_in":null,"score":{"opus":0.1640732146064067,"gpt":0.382105511443903,"spread":0.2180322968374964,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006888533,0.0003664416,0.0009217059,0.0003100787,0.0002367346,0.0002801254,0.0002213602,0.0001637014,0.0008950005],"category_scores_gemma":[0.0002762422,0.0002409839,0.00016837,0.0005261101,0.0001080416,0.0009013426,0.00009386471,0.0002110897,0.0002252591],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005366109,"about_ca_system_score_gemma":0.002501273,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004677948,"about_ca_topic_score_gemma":0.0002699895,"domain_scores_codex":[0.9968257,0.00007853084,0.0008654807,0.0004546011,0.0007587879,0.0010169],"domain_scores_gemma":[0.9969404,0.0002571473,0.0001902199,0.0007562531,0.000378953,0.001477054],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.001948706,0.01689973,0.1440742,0.007789017,0.003856958,0.0003729638,0.04437653,0.007919144,0.0001548449,0.2885826,0.1562968,0.3277284],"study_design_scores_gemma":[0.02707309,0.005696759,0.4550867,0.002422926,0.000540227,0.0008520414,0.04022618,0.4404235,0.00005341644,0.01006622,0.01546105,0.002097858],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7791612,0.0006292775,0.05187906,0.1540169,0.0001102772,0.008013542,0.0002740319,0.0004707725,0.005444963],"genre_scores_gemma":[0.9621508,0.00003339491,0.02063747,0.01604286,0.0002537589,0.0004039041,0.0001042424,0.00006405864,0.000309578],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4325044,"threshold_uncertainty_score":0.9827037,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3169575415","doi":"10.1007/s11904-021-00564-z","title":"The Intersection of HIV and Syphilis: Update on the Key Considerations in Testing and Management","year":2021,"lang":"en","type":"review","venue":"Current HIV/AIDS Reports","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University Health Network; University of Toronto","funders":"","keywords":"Syphilis; Intersection (aeronautics); Human immunodeficiency virus (HIV); Key (lock); Medicine; Computer science; Psychology; Virology; Computer security; Engineering; Transport engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.0919977076311853,"gpt":0.3510706937237116,"spread":0.2590729860925263,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006151429,0.000281909,0.0008450157,0.0001296843,0.000155204,0.00007346572,0.00003473809,0.00006849854,0.00002394506],"category_scores_gemma":[0.0008186324,0.0001475496,0.0001596604,0.0002497995,0.0001208699,0.00003220405,0.0001274979,0.0002855059,0.000002763605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001260125,"about_ca_system_score_gemma":0.0001114277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007491134,"about_ca_topic_score_gemma":0.00001655644,"domain_scores_codex":[0.9980862,0.0001678197,0.0008777591,0.0004595612,0.0002398845,0.0001688437],"domain_scores_gemma":[0.9977828,0.001012881,0.0005121382,0.0005427718,0.00008592386,0.00006353224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000002568871,0.0002869176,0.004391261,0.003982239,0.0003829013,0.0005735749,0.000165805,7.916285e-7,1.015363e-7,0.005468477,0.004558468,0.9801869],"study_design_scores_gemma":[0.0003818731,0.0001508874,0.002007089,0.0583957,0.002244493,0.001922764,0.0003085326,0.00001861453,0.000005260501,0.0007054774,0.9336296,0.0002296475],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001432483,0.9949432,0.000004015224,0.0004356997,0.0004016497,0.001529901,0.00001351212,0.00001683561,0.001222697],"genre_scores_gemma":[0.00544189,0.9936848,0.0001184518,0.0000286985,0.00008150499,0.0004264402,0.00008175868,0.0000229391,0.0001135165],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9799572,"threshold_uncertainty_score":0.6016899,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2578569692","doi":"10.1097/olq.0000000000000572","title":"Point-of-Care Sexually Transmitted Infection Diagnostics: Proceedings of the STAR Sexually Transmitted Infection—Clinical Trial Group Programmatic Meeting","year":2017,"lang":"en","type":"review","venue":"Sexually Transmitted Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University Health Centre","funders":"Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Medicine; Chlamydia trachomatis; Point-of-care testing; Sexually transmitted disease; Gonorrhea; Neisseria gonorrhoeae; Government (linguistics); Point of care; Health care; Gynecology; Family medicine; Syphilis; Immunology; Nursing; Economic growth","retraction":null,"screen_n_in":null,"score":{"opus":0.06906699950301681,"gpt":0.3747125308290464,"spread":0.3056455313260296,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.001269039,0.00212735,0.00705629,0.0008503717,0.0006569772,0.0002814935,0.00110545,0.001542449,0.0001479729],"category_scores_gemma":[0.002654685,0.001490727,0.004399663,0.001456372,0.001165182,0.0005214819,0.0001029899,0.001656593,0.00002033177],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003732523,"about_ca_system_score_gemma":0.002316361,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005296629,"about_ca_topic_score_gemma":0.0003329436,"domain_scores_codex":[0.9881819,0.0008415489,0.005485767,0.002106744,0.002122246,0.001261816],"domain_scores_gemma":[0.9895188,0.002801015,0.003538954,0.001769799,0.001454381,0.0009170857],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00504726,0.01188494,0.0382282,0.09446774,0.006440317,0.00007258379,0.001249055,0.000002101336,0.000007283023,0.000175723,0.0004095282,0.8420153],"study_design_scores_gemma":[0.1261311,0.03297166,0.142198,0.1434251,0.1338872,0.0002421293,0.001017587,0.00007798416,0.00009165268,0.0005240122,0.414537,0.004896512],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1678939,0.8085915,0.00009297018,0.0002195057,0.001854565,0.01910756,0.001238034,0.0005931014,0.000408816],"genre_scores_gemma":[0.08117224,0.9114595,0.0004387278,0.0001453521,0.001370621,0.003223848,0.001623334,0.0004703166,0.00009605224],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8371187,"threshold_uncertainty_score":0.9997538,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1664819417","doi":"10.1186/s12879-015-1098-2","title":"High incidence of diagnosis with syphilis co-infection among men who have sex with men in an HIV cohort in Ontario, Canada","year":2015,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Ministry of Health and Long Term Care; Mount Sinai Hospital; Toronto Rehabilitation Institute; University of Toronto; University Health Network; Ontario HIV Treatment Network; Public Health Ontario; Toronto Public Health; St. Michael's Hospital","funders":"University of Toronto; Ontario Ministry of Health and Long-Term Care; Canadian Institutes of Health Research; Ontario HIV Treatment Network; University of Ottawa","keywords":"Syphilis; Medicine; Men who have sex with men; Cohort; Demography; Incidence (geometry); Population; Public health; Epidemiology; Poisson regression; Cohort study; Pediatrics; Human immunodeficiency virus (HIV); Internal medicine; Immunology; Environmental health","retraction":null,"screen_n_in":null,"score":{"opus":0.0124180313144329,"gpt":0.2437291607564749,"spread":0.231311129442042,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001626898,0.0003066991,0.0006490115,0.0002522527,0.00005180755,0.00003100801,0.00007314661,0.00007939142,0.0001245703],"category_scores_gemma":[0.0001005831,0.0002333582,0.00004312495,0.0003050673,0.0001294548,0.000294327,0.00002337371,0.0001659979,0.000002003268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002453153,"about_ca_system_score_gemma":0.002358148,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9925777,"about_ca_topic_score_gemma":0.9991527,"domain_scores_codex":[0.9980808,0.0001273798,0.0003759971,0.0004906811,0.0005906131,0.0003344766],"domain_scores_gemma":[0.9985616,0.0001760676,0.0001834031,0.0004529664,0.000205757,0.0004202343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003779219,0.001638343,0.9907654,0.00006880515,0.0001358513,0.0002690438,0.0004384735,0.003693161,0.000001264094,0.00001498226,0.00246721,0.0001295308],"study_design_scores_gemma":[0.005182546,0.00168466,0.9908251,0.0004095269,0.0003659774,0.00002883706,0.0003550242,0.0004114006,0.0004015686,0.0000238448,0.00004844538,0.000263091],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946262,0.00009562769,0.00001303083,0.00004046199,0.00002295063,0.001337329,0.00005029959,0.00005329585,0.003760759],"genre_scores_gemma":[0.9983135,0.00003788372,0.00002091751,0.0000727352,0.00004705104,0.001101608,0.0001809643,0.00003722575,0.0001880729],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006575061,"threshold_uncertainty_score":0.9516069,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011825300","doi":"10.1097/00007435-200304000-00005","title":"Impact of Mass Treatment on Syphilis Transmission","year":2003,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"BC Centre for Disease Control; Cegep de Sept Iles; University of British Columbia","funders":"","keywords":"Syphilis; Medicine; Transmission (telecommunications); Sexually transmitted disease; Population; Outbreak; Demography; Environmental health; Immunology; Virology; Telecommunications; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.02179717070699731,"gpt":0.3081024556182551,"spread":0.2863052849112578,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004402224,0.0003704859,0.0005760675,0.0001834527,0.00006609494,0.00001329676,0.00006781967,0.00009812203,0.001155673],"category_scores_gemma":[0.00002428961,0.0002367658,0.0006201243,0.0002668611,0.00007590673,0.00005561273,0.000001142425,0.00006720955,0.00002884254],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002249277,"about_ca_system_score_gemma":0.0003519063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008256485,"about_ca_topic_score_gemma":0.000002092804,"domain_scores_codex":[0.9983859,0.00009922032,0.0003604248,0.0004247738,0.0003847395,0.0003449543],"domain_scores_gemma":[0.998704,0.0001888786,0.0000686241,0.0004643446,0.00008261968,0.0004915131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003234282,0.0297997,0.7709221,0.000291524,0.003239737,0.0004889729,0.0009354558,0.0005283947,0.01972287,0.001330524,0.0009254809,0.1685809],"study_design_scores_gemma":[0.01324991,0.01757655,0.9317721,0.0003495464,0.002043887,0.00002746748,0.0001440805,0.00007123203,0.0302551,0.0005661896,0.003514271,0.0004296237],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919083,0.003142135,0.0003045098,0.0002584858,0.00004795717,0.0008301925,0.0002761065,0.0001098482,0.003122436],"genre_scores_gemma":[0.9983104,0.0006783975,0.0003675235,0.0001246544,0.00003968243,0.0000994959,0.0001575532,0.00004626123,0.0001759935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1681513,"threshold_uncertainty_score":0.9997574,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2074214961","doi":"10.1016/j.ijid.2009.09.009","title":"Maternal and congenital syphilis in Shanghai, China, 2002 to 2006","year":2010,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada; University of Ottawa","funders":"Institute of Gender and Health; Canadian Institutes of Health Research; University of Ottawa","keywords":"China; Syphilis; Congenital syphilis; Shanghai china; Medicine; Geography; Virology; Regional science; Archaeology; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.005778481477839747,"gpt":0.2735924455191505,"spread":0.2678139640413107,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000796592,0.0001153336,0.0002079046,0.0003853964,0.00002162349,0.00007067829,0.0001020857,0.00004187755,0.0007164327],"category_scores_gemma":[0.0002622982,0.00009076652,0.00009590041,0.0000939849,0.00004131009,0.0001483209,0.00003313951,0.0001668792,0.00002917568],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008717234,"about_ca_system_score_gemma":0.00007934803,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003879927,"about_ca_topic_score_gemma":0.0004438904,"domain_scores_codex":[0.9990785,0.00001498339,0.0003132643,0.0001190461,0.0003520456,0.0001221275],"domain_scores_gemma":[0.9991372,0.00005991638,0.0001222841,0.00008257934,0.000343507,0.000254467],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001894783,0.0006636889,0.9846708,0.000005914892,0.0002315691,0.0007277297,0.00007628532,0.00002229178,0.001019392,0.0001482152,0.001555266,0.01068942],"study_design_scores_gemma":[0.002283328,0.0003744237,0.9927867,0.0001014843,0.0000846817,0.001646185,0.00001550467,0.0000230919,0.0009713324,0.0002130462,0.001423375,0.00007681314],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955147,0.0004972134,0.00001954879,0.001517266,0.0009948288,0.0001310369,0.00006987667,0.00001321245,0.001242323],"genre_scores_gemma":[0.9985279,0.0001403938,0.00007694504,0.0004917104,0.0006411901,0.00001171531,0.000004169589,0.00001256603,0.00009342824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01061261,"threshold_uncertainty_score":0.7844436,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2891402235","doi":"10.1038/s41426-018-0156-4","title":"Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium <i>Treponema pallidum</i> subsp. <i>pertenue</i>","year":2018,"lang":"en","type":"letter","venue":"Emerging Microbes & Infections","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Grantová Agentura České Republiky; Deutsche Forschungsgemeinschaft; Agence Nationale de la Recherche; Deutscher Akademischer Austauschdienst; European Research Council; National Science Foundation","keywords":"Treponema; Syphilis; Biology; Treponematosis; Virology; Geography; Sexually transmitted disease; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.01714929267376839,"gpt":0.2565026970860845,"spread":0.2393534044123161,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.000255946,0.001054828,0.001147514,0.0002690041,0.001373561,0.0003518066,0.0003391482,0.0007337045,0.0005138332],"category_scores_gemma":[0.00008209552,0.0006883857,0.0006122667,0.0008374777,0.0005690093,0.000177918,0.000195709,0.001853662,0.0004925411],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003617751,"about_ca_system_score_gemma":0.0001825228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004136803,"about_ca_topic_score_gemma":0.001492411,"domain_scores_codex":[0.9961991,0.0002013752,0.0006938276,0.001113389,0.0005181836,0.001274165],"domain_scores_gemma":[0.9966555,0.0003645097,0.0006450904,0.001535826,0.0006257734,0.0001732802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003819507,0.0007278119,0.02184883,0.0003195692,0.001270043,0.0004498179,0.0009997488,0.000004013565,0.006721847,0.000001227035,0.9673927,0.0002261719],"study_design_scores_gemma":[0.001573376,0.0006218941,0.02320775,0.001133108,0.001481408,0.0008471607,0.00006785402,0.000003054639,0.006856191,0.000007611785,0.9634534,0.0007471901],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.5556606,0.004838688,0.00006143926,0.4302959,0.001771865,0.002641501,0.0008987951,0.001003861,0.002827371],"genre_scores_gemma":[0.4017196,0.007204085,0.0004019474,0.542973,0.02377815,0.004349444,0.007244272,0.001516252,0.01081328],"genre_candidate":"commentary","genre_consensus":null,"teacher_disagreement_score":0.153941,"threshold_uncertainty_score":0.9999265,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2050596014","doi":"10.1016/j.micinf.2006.06.001","title":"Localization of Haemophilus ducreyi in naturally acquired chancroidal ulcers","year":2006,"lang":"en","type":"article","venue":"Microbes and Infection","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; Indiana University-Purdue University Indianapolis; Lilly Endowment","keywords":"Haemophilus ducreyi; Chancroid; Sexually transmitted disease; Biology; Microbiology; Fusobacterium nucleatum; Bacterial adhesin; Staining; Pathology; Pasteurellaceae; Bacteria; Immunology; Virulence; Porphyromonas gingivalis; Medicine; Antibiotics; Syphilis; Haemophilus influenzae","retraction":null,"screen_n_in":null,"score":{"opus":0.007303918684312039,"gpt":0.2350664288778923,"spread":0.2277625101935802,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005050577,0.00007503507,0.0001474293,0.0001149854,0.00002886137,0.000008326355,0.000008197019,0.00006409789,0.0000275077],"category_scores_gemma":[0.000009328523,0.00006269194,0.00003699129,0.0001414512,0.00003278807,0.00006251718,0.000009328056,0.00002831511,0.000002663022],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006016187,"about_ca_system_score_gemma":0.00001235221,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00276619,"about_ca_topic_score_gemma":0.00063912,"domain_scores_codex":[0.9995587,0.00001261836,0.0001623275,0.00012425,0.00005320806,0.00008891308],"domain_scores_gemma":[0.9998162,0.00001062987,0.00004837235,0.00006331316,0.00004229975,0.00001916286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001043152,0.0005510983,0.9300151,0.000130393,0.00003239112,0.00001547716,0.0001591169,0.0002914727,0.0555858,0.0003265327,0.001112462,0.0116758],"study_design_scores_gemma":[0.001944634,0.0003306898,0.8939561,0.0001606353,0.00005002673,0.00007545937,0.0000189301,0.0005215994,0.09919053,0.0001669365,0.003497729,0.00008676808],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976705,0.001053286,0.0001413925,0.0002492306,0.0000985404,0.0001952304,0.000002485646,0.00001774329,0.0005715328],"genre_scores_gemma":[0.9991878,0.0004417368,0.0000549027,0.00008990469,0.0000749012,0.000009585668,0.00005528553,0.000007291888,0.00007864975],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04360472,"threshold_uncertainty_score":0.418167,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2028679758","doi":"10.1097/olq.0b013e3181bd11dd","title":"Evaluation of Azithromycin Resistance in Treponema pallidum Specimens From Madagascar","year":2009,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute on Drug Abuse","keywords":"Azithromycin; Treponema; Syphilis; Medicine; Early syphilis; Resistance (ecology); Virology; Microbiology; Antibiotics; Biology; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.03198137467819435,"gpt":0.3088025834395586,"spread":0.2768212087613643,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000263023,0.0002165052,0.000464461,0.0001541847,0.0000291545,0.00001259626,0.00008770125,0.0000790578,0.0005324279],"category_scores_gemma":[0.0001291979,0.0001877443,0.0001376746,0.000319452,0.00005372355,0.00008304267,0.000003418949,0.00008014843,0.00001221065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000168845,"about_ca_system_score_gemma":0.0002841954,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008559356,"about_ca_topic_score_gemma":0.0006606873,"domain_scores_codex":[0.9975902,0.0001821683,0.0004827064,0.000424974,0.001075045,0.0002448757],"domain_scores_gemma":[0.9988491,0.0001569936,0.0001008902,0.000469917,0.0002444949,0.0001786357],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003350717,0.02497988,0.7953143,0.0002421325,0.00147611,0.0008191986,0.004236782,0.0003596445,0.03407202,0.001893367,0.004239854,0.129016],"study_design_scores_gemma":[0.006268474,0.0003840316,0.9814941,0.0003401977,0.001479147,0.000001166408,0.0002309874,0.000152259,0.003442096,0.005883376,0.0001666037,0.000157551],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.981073,0.01350218,0.00003431317,0.00180176,0.00005848077,0.0007787665,0.0002779029,0.00005524415,0.002418343],"genre_scores_gemma":[0.998365,0.0002004283,0.0006135506,0.0003470079,0.00009168054,0.00005506673,0.0002617161,0.00001834141,0.00004720575],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1861798,"threshold_uncertainty_score":0.765599,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2156506096","doi":"10.1128/iai.01083-10","title":"Bifunctional Role of the<i>Treponema pallidum</i>Extracellular Matrix Binding Adhesin Tp0751","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Canada Research Chairs; Michael Smith Health Research BC","keywords":"Bacterial adhesin; Biology; Treponema; Metalloproteinase; Recombinant DNA; Proteases; Microbiology; Escherichia coli; Biochemistry; Molecular biology; Matrix metalloproteinase; Enzyme; Virology; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.01264472496514613,"gpt":0.26368764332433,"spread":0.2510429183591839,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002012526,0.00009409637,0.0001458325,0.00007516972,0.0001909052,0.00001527786,0.0000293121,0.00008747822,0.0004263427],"category_scores_gemma":[0.0001122282,0.00006410757,0.0001063429,0.0001576576,0.00008481598,0.00005846161,0.00003659833,0.000270337,0.00002123096],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002195458,"about_ca_system_score_gemma":0.00003939653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000752476,"about_ca_topic_score_gemma":0.0001604585,"domain_scores_codex":[0.9994321,0.00004937693,0.0001797709,0.0001053015,0.0001350231,0.00009846165],"domain_scores_gemma":[0.9994738,0.00007565178,0.00006832073,0.0002523795,0.00007403307,0.00005581476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002661343,0.0003929356,0.73168,0.00001820262,0.00005423491,8.303165e-7,0.00008903395,8.85642e-7,0.2634304,0.001060903,0.00006836374,0.003177579],"study_design_scores_gemma":[0.0007215686,0.0001363093,0.8830494,0.00003891725,0.00009044245,0.0001052353,0.00005934166,0.00003661912,0.1005967,0.0001993845,0.01490715,0.00005891426],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974255,0.0004613652,0.000007597954,0.000254958,0.0004160533,0.0001874666,0.00000696796,0.00003081407,0.001209276],"genre_scores_gemma":[0.9991874,0.0001164921,0.00005727485,0.00002610139,0.00007396141,0.00001665488,0.00001256285,0.000008765216,0.0005007818],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1628337,"threshold_uncertainty_score":0.4668153,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2376676916","doi":"10.1371/journal.pntd.0004711","title":"The Global Epidemiology of Syphilis in the Past Century – A Systematic Review Based on Antenatal Syphilis Prevalence","year":2016,"lang":"en","type":"review","venue":"PLoS neglected tropical diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true},"ca_institutions":"","funders":"Institute for Health Metrics and Evaluation","keywords":"Syphilis; Medicine; Demography; Congenital syphilis; Epidemiology; Public health; Population; Environmental health; Geography; Family medicine; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.04482396100629307,"gpt":0.3433838365113683,"spread":0.2985598755050752,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008604481,0.0007649704,0.004790713,0.0001276342,0.0001284764,0.00001784975,0.0008941786,0.0002706178,0.0001027354],"category_scores_gemma":[0.01347938,0.0002849911,0.001614593,0.0008648036,0.0004108056,0.00003985886,0.00007908204,0.0004050045,0.00007755864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005037258,"about_ca_system_score_gemma":0.0004250515,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009203037,"about_ca_topic_score_gemma":0.00000566865,"domain_scores_codex":[0.9917732,0.003819941,0.002099199,0.0008136299,0.0008053217,0.0006886739],"domain_scores_gemma":[0.9841139,0.0125081,0.0009562071,0.001924996,0.0001942495,0.0003025656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.000112842,0.002541628,0.006451599,0.9724876,0.0008028432,0.0002637508,0.000004824374,1.339923e-7,8.22904e-8,0.0007649543,0.0008495163,0.01572021],"study_design_scores_gemma":[0.0007769095,0.0007144979,0.06028488,0.9158708,0.01484809,0.00008484488,0.000005722648,0.00001642863,7.420608e-8,0.00008262488,0.007036311,0.0002787699],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004670354,0.9882405,0.00000418939,0.002249455,0.0001045376,0.007712238,0.0014966,0.00006304563,0.00008266167],"genre_scores_gemma":[0.00413362,0.9901507,0.000008952411,0.001517622,0.0001976953,0.00370352,0.0002343147,0.0000446023,0.000008960737],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.05661676,"threshold_uncertainty_score":0.9999602,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2124107769","doi":"10.1002/mds.24950","title":"Acquired neurosyphilis presenting as movement disorders","year":2012,"lang":"en","type":"review","venue":"Movement Disorders","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Neurosyphilis; Syphilis; Movement disorders; Medicine; Ataxia; Pediatrics; Disease; Incidence (geometry); Presentation (obstetrics); Psychiatry; Surgery; Pathology; Immunology","retraction":null,"screen_n_in":null,"score":{"opus":0.04799602143933196,"gpt":0.3347463312449983,"spread":0.2867503098056663,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0003475575,0.001375667,0.002631785,0.0004917554,0.0002877208,0.0001210852,0.0004601439,0.0004389438,0.001990885],"category_scores_gemma":[0.0001092817,0.001110068,0.001808459,0.0006215312,0.0001588845,0.0002130247,0.000448101,0.0003889347,0.0007000139],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00059454,"about_ca_system_score_gemma":0.0002525629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006076425,"about_ca_topic_score_gemma":0.0002366717,"domain_scores_codex":[0.9944879,0.0002073055,0.001407875,0.00130017,0.00117899,0.001417807],"domain_scores_gemma":[0.9969566,0.0002360165,0.0006988705,0.001476584,0.00006029426,0.0005715632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002028336,0.003285602,0.005401366,0.009125548,0.001713055,0.00002887411,0.0002074103,0.000002279331,9.81454e-7,0.0006791775,0.008681932,0.9708535],"study_design_scores_gemma":[0.001679036,0.0004213154,0.001112146,0.00376748,0.005106416,0.000001400068,0.000165998,0.000008007648,0.00000643064,0.003766268,0.9830403,0.0009251982],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002514786,0.9748973,0.00001060897,0.002044391,0.00107068,0.005710567,0.00008949843,0.0002507208,0.01567478],"genre_scores_gemma":[0.0004021753,0.9870072,0.00006327947,0.005134287,0.0004304681,0.002524945,0.0008536484,0.0003090715,0.00327493],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9743584,"threshold_uncertainty_score":0.9998994,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2011078080","doi":"10.1016/j.ijporl.2009.02.021","title":"A systematic review of pediatric sensorineural hearing loss in congenital syphilis","year":2009,"lang":"en","type":"review","venue":"International Journal of Pediatric Otorhinolaryngology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Centre for Advancing Health Outcomes; University of British Columbia; BC Children's Hospital; St. Paul's Hospital","funders":"Centers for Disease Control and Prevention; Provincial Health Services Authority","keywords":"Medicine; Congenital syphilis; Syphilis; Sensorineural hearing loss; Pediatrics; Hearing loss; Cohort study; Cohort; Prospective cohort study; Serology; Surgery; Internal medicine; Immunology; Audiology; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.04122625048903887,"gpt":0.3542407594197197,"spread":0.3130145089306808,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001051008,0.0005579732,0.005118171,0.002061362,0.00001973469,0.00002166591,0.0007135725,0.0003897453,0.0001114268],"category_scores_gemma":[0.001795005,0.0004070968,0.001730834,0.0006597464,0.00004634451,0.0001709616,0.0001269843,0.0009382588,0.00004046477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006242879,"about_ca_system_score_gemma":0.0008636578,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003114284,"about_ca_topic_score_gemma":0.000003995239,"domain_scores_codex":[0.9935929,0.0004826226,0.004081846,0.0003763683,0.001109557,0.0003566658],"domain_scores_gemma":[0.9937176,0.0009692258,0.003689599,0.0003954842,0.001013073,0.0002150018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.00007725776,0.001556393,0.02457997,0.9520748,0.002906447,0.009321579,0.00007418653,9.549317e-7,2.092587e-7,0.00009710144,0.001038777,0.008272347],"study_design_scores_gemma":[0.006737205,0.002960343,0.01147454,0.8368204,0.06984375,0.05088751,0.00002461219,0.000005865777,0.000002633862,0.0000882787,0.01990258,0.001252351],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00596174,0.9905108,0.000002484794,0.0002366282,0.001513792,0.001583644,0.00005895965,0.00001396435,0.0001180324],"genre_scores_gemma":[0.002776319,0.9927864,0.0001260597,0.0002324292,0.003866436,0.00005778989,0.0000560514,0.00005113686,0.00004735267],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.1152544,"threshold_uncertainty_score":0.9998381,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1885221763","doi":"10.1016/s0072-9752(07)01272-9","title":"Biology and Neuropathology of Dementia in Syphilis and Lyme Disease","year":2008,"lang":"en","type":"article","venue":"Handbook of clinical neurology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Neurosyphilis; Dementia; Borrelia burgdorferi; Lyme disease; Treponema; Syphilis; Pathology; Neuropathology; Medicine; Disease; Immunology; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.07302489140719046,"gpt":0.3812759916258537,"spread":0.3082511002186633,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002332573,0.0001175937,0.0007580244,0.0001136153,0.00001849959,6.570882e-7,0.00004724265,0.0001470672,0.00004135753],"category_scores_gemma":[0.0008469371,0.00009432391,0.00008919169,0.00005647921,0.001024513,0.00001878784,0.00009556643,0.0001642731,0.000002062844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001251994,"about_ca_system_score_gemma":0.00005457903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002906759,"about_ca_topic_score_gemma":0.00001402649,"domain_scores_codex":[0.9983551,0.0002829617,0.000757915,0.0003692689,0.00006088,0.0001738984],"domain_scores_gemma":[0.9982838,0.001093082,0.000174457,0.0002317875,0.00004114534,0.0001757106],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00104686,0.0006498995,0.9929102,0.00003874335,0.00004252224,0.0005394316,0.00003587401,5.047961e-7,0.0003944263,0.0003097373,0.00005332389,0.003978475],"study_design_scores_gemma":[0.004025652,0.003112792,0.9910597,0.0000337363,0.0001387708,0.0001979192,0.000001391492,0.00004702249,0.0002866018,0.0005796612,0.0004646601,0.00005213111],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894199,0.008135641,0.00001144448,0.001951101,0.0001185097,0.0002237224,0.00001160494,0.000008884695,0.0001191943],"genre_scores_gemma":[0.9860929,0.0118379,0.0001398874,0.001841244,0.00004905086,0.00001387094,0.000006775117,0.0000103562,0.000008050395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003926344,"threshold_uncertainty_score":0.3846417,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2014989302","doi":"10.3109/09273948.2013.841960","title":"Syphilitic Outer Retinopathy","year":2013,"lang":"en","type":"article","venue":"Ocular Immunology and Inflammation","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Syphilis; Occult; Dermatology; Blind spot; Ophthalmology; Retinopathy; Differential diagnosis; Penicillin; Visual acuity; Pathology; Immunology; Antibiotics; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.00802460367577052,"gpt":0.2231062054375479,"spread":0.2150816017617774,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006510207,0.00008190389,0.0001365338,0.00005639087,0.00005920415,0.00001641186,0.00002117053,0.00009912396,0.0004455964],"category_scores_gemma":[0.00005775174,0.00006378548,0.00003733256,0.0000381538,0.00006721613,0.000126083,0.00001938073,0.00007342407,0.0004368984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002400511,"about_ca_system_score_gemma":0.00001122064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000032462,"about_ca_topic_score_gemma":0.00000120165,"domain_scores_codex":[0.9995013,0.00003250439,0.0001532436,0.0001333036,0.00005674393,0.0001228485],"domain_scores_gemma":[0.9996601,0.0000267812,0.0000380589,0.0001754328,0.00006520095,0.00003436438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001604741,0.0004152239,0.4167171,0.0001920628,0.0009905954,0.0001818031,0.002001667,0.000002443936,0.1485207,0.03205818,0.001564835,0.3971949],"study_design_scores_gemma":[0.001410907,0.0003392745,0.9617256,0.00006270581,0.00009025412,0.0001942717,0.0001005165,0.000120094,0.02683094,0.002315798,0.006707014,0.0001026309],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915399,0.001267873,0.0000369954,0.004241251,0.00009235631,0.0003446322,5.207644e-7,0.00003876136,0.002437711],"genre_scores_gemma":[0.9986962,0.0002723826,0.0002319322,0.0002271441,0.00006343954,0.0001128456,0.00003900174,0.000006990987,0.0003500612],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5450085,"threshold_uncertainty_score":0.561559,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078727839","doi":"10.1159/000088337","title":"Syphilitic Coronary Artery Ostial Stenosis Resulting in Acute Myocardial Infarction and Death","year":2005,"lang":"en","type":"review","venue":"Cardiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Kronos (Canada)","funders":"","keywords":"Medicine; Aortitis; Cardiology; Internal medicine; Syphilis; Myocardial infarction; Stenosis; Artery; Aorta; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.06015357757395558,"gpt":0.346893698218496,"spread":0.2867401206445405,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002953805,0.0004478699,0.002895066,0.0003298551,0.00005831778,0.00001313479,0.00007271852,0.0006310063,0.00001673646],"category_scores_gemma":[0.0001462424,0.0003556772,0.0005877363,0.0001457702,0.0001045149,0.00004708283,0.0001016485,0.0004885656,0.00005099644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004425459,"about_ca_system_score_gemma":0.0002021663,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002833391,"about_ca_topic_score_gemma":0.000004968429,"domain_scores_codex":[0.9977,0.0003567796,0.0006740462,0.000690872,0.0001436102,0.0004347195],"domain_scores_gemma":[0.9987381,0.0004846715,0.0001549465,0.0004183117,0.00004904143,0.0001549085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004647591,0.00005532036,0.02655258,0.0009401577,0.002331881,0.00155549,0.00004772492,0.000002029298,4.409499e-7,0.00005049276,0.000291963,0.9681255],"study_design_scores_gemma":[0.002255397,0.0006190116,0.1263918,0.004416738,0.008210946,0.00907105,0.00003257152,0.000003520284,2.111101e-7,0.00002268898,0.848573,0.0004030507],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01034604,0.9866127,0.000002998719,0.0001550219,0.0006271116,0.001218383,0.000105916,0.00004944094,0.0008823516],"genre_scores_gemma":[0.01869405,0.9783605,0.00007234856,0.0001811979,0.001590508,0.0004534442,0.0005414295,0.00005224946,0.000054304],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9677224,"threshold_uncertainty_score":0.9998895,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2577148680","doi":"10.1136/sextrans-2016-052870","title":"A double-edged sword: does highly active antiretroviral therapy contribute to syphilis incidence by impairing immunity to<i>Treponema pallidum</i>?","year":2017,"lang":"en","type":"review","venue":"Sexually Transmitted Infections","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria; McMaster University; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Syphilis; Medicine; Immunology; Chlamydia; Treponema; Men who have sex with men; Incidence (geometry); Population; Transmission (telecommunications); Gonorrhea; Virology; Sexually transmitted disease; Human immunodeficiency virus (HIV); Environmental health","retraction":null,"screen_n_in":null,"score":{"opus":0.05502287792720334,"gpt":0.3703694284687666,"spread":0.3153465505415633,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0006750832,0.001385672,0.003758141,0.0008759518,0.001182349,0.0003352016,0.0006891681,0.0007639932,0.0002848563],"category_scores_gemma":[0.0003344299,0.0009739038,0.00127116,0.001145186,0.0001854321,0.0003833956,0.0001445938,0.001412634,0.0003165356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008915103,"about_ca_system_score_gemma":0.0009715192,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002840773,"about_ca_topic_score_gemma":0.001220827,"domain_scores_codex":[0.9949064,0.0004365776,0.001416329,0.001417372,0.0007203579,0.001102923],"domain_scores_gemma":[0.9949316,0.0008056833,0.0006255117,0.002146263,0.0005483857,0.0009425751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004729101,0.00321812,0.002525157,0.002501917,0.004244394,0.0001825888,0.001358002,0.000003007119,0.0001681071,0.00005801707,0.002841969,0.9824258],"study_design_scores_gemma":[0.004685814,0.004127022,0.00401879,0.01011825,0.002811339,0.0001827214,0.00007170594,0.00000114093,0.0004537804,0.00002014777,0.9723699,0.001139388],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0407436,0.9405577,0.0005447714,0.001665864,0.001654798,0.01067058,0.002271632,0.0007557867,0.00113531],"genre_scores_gemma":[0.0379742,0.9550729,0.0001399547,0.000605138,0.0005000799,0.00344103,0.0009456609,0.0002278779,0.001093124],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9812864,"threshold_uncertainty_score":0.9998894,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2019354463","doi":"10.1097/olq.0b013e318205491a","title":"Evaluation of an IgM/IgG Sensitive Enzyme Immunoassay and the Utility of Index Values for the Screening of Syphilis Infection in a High-Risk Population","year":2011,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"BioSci Research Canada (Canada)","funders":"National Center for Advancing Translational Sciences","keywords":"Syphilis; Medicine; Treponema; Immunoassay; Immunology; Population; Treponematosis; Antibody; Sexually transmitted disease; Virology; Environmental health; Human immunodeficiency virus (HIV)","retraction":null,"screen_n_in":null,"score":{"opus":0.04046578949942203,"gpt":0.3022365354748704,"spread":0.2617707459754484,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00159557,0.0001315002,0.000357658,0.0001143356,0.00006754051,0.000004828367,0.00004677724,0.00006329056,0.00002572238],"category_scores_gemma":[0.0004680149,0.00007703163,0.0001119766,0.0001996617,0.0002338646,0.0001210754,0.000008267707,0.00006653205,5.00024e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000231952,"about_ca_system_score_gemma":0.00007822679,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01666725,"about_ca_topic_score_gemma":0.001089892,"domain_scores_codex":[0.9981734,0.0006099501,0.000437872,0.0002064022,0.0004639131,0.0001084923],"domain_scores_gemma":[0.9981434,0.0007708474,0.0002602038,0.0003041719,0.0004804566,0.00004089834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003113128,0.001242662,0.8766895,0.0001253713,0.000563418,5.974389e-7,0.00379173,0.0002544619,0.0001330507,0.0002073392,0.000002682712,0.113876],"study_design_scores_gemma":[0.007234079,0.0005497892,0.9425334,0.0001339206,0.002879424,0.000001339425,0.0008751315,0.03950226,0.003192523,0.003037368,4.12148e-7,0.00006035597],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944436,0.00160937,0.001866809,0.00006622139,0.00003837926,0.001730067,0.0002077336,0.00001374852,0.00002408541],"genre_scores_gemma":[0.999332,0.000200555,0.0001478167,0.00002041722,0.00002331506,0.0001442114,0.0001188639,0.0000121769,6.975407e-7],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1138157,"threshold_uncertainty_score":0.9898809,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}