{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":941,"total_is_capped":false,"direct_labels_cover":6,"predictions_cover":941,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"query_hash":"2cdd96366961","filters":{"topic":"Vibrio bacteria research studies"}},"results":[{"id":"W2058729834","doi":"10.1038/nrmicro1462","title":"Integrons: agents of bacterial evolution","year":2006,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1105,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; European Commission; Institut national de la recherche scientifique; Institut Français de Recherche pour l'Exploitation de la Mer","keywords":"Biology; Integron; Genome; Gene; Genetics; Bacterial genome size; DNA; Open reading frame; Computational biology; Plasmid; Evolutionary biology","retraction":null,"screen_n_in":null,"score":{"opus":0.02860190253896362,"gpt":0.3644583948820678,"spread":0.3358564923431042,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005885508,0.0006410939,0.002730933,0.0001863711,0.0000583932,0.00001269168,0.0007106609,0.002214199,0.00009134492],"category_scores_gemma":[0.0004642817,0.000455742,0.001098162,0.0002482086,0.0002843305,0.000003327369,0.0005623936,0.0008935315,0.00009645923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001305574,"about_ca_system_score_gemma":0.000331252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001099242,"about_ca_topic_score_gemma":0.00004325503,"domain_scores_codex":[0.9964768,0.001004466,0.001161353,0.0007932787,0.00006638467,0.000497715],"domain_scores_gemma":[0.998021,0.00004187025,0.0009073114,0.000809929,0.0001601515,0.0000597376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004850013,0.0001503138,0.000007445702,0.02508433,0.0006946778,0.000005810022,0.000005184162,5.485147e-8,0.0747492,0.00008948596,0.2293701,0.6697949],"study_design_scores_gemma":[0.0001932116,0.0001709179,0.000004389492,0.003751689,0.000330605,0.00009434155,0.000001075303,2.196098e-8,0.0002804811,0.000005536654,0.994812,0.0003556973],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00004123068,0.9963545,0.00003928901,0.000009610685,0.0009457328,0.001519414,0.0006818608,0.00001048055,0.0003978656],"genre_scores_gemma":[0.0000192709,0.9894992,0.0003892115,0.00003135485,0.00093287,0.0001674998,0.008176904,0.00005960794,0.0007240648],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.765442,"threshold_uncertainty_score":0.9997894,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1987447861","doi":"10.3389/fmicb.2014.00258","title":"The importance of the viable but non-culturable state in human bacterial pathogens","year":2014,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":951,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Microbiology; Biology; Human health; Bacteria; Human pathogen; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.009900012624831565,"gpt":0.2756471698890443,"spread":0.2657471572642127,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007317621,0.000373706,0.001243118,0.00007960675,0.0001534786,0.00002390503,0.001033421,0.0004349244,0.00000730575],"category_scores_gemma":[0.0001903011,0.000208814,0.0003213797,0.0002018851,0.0006161635,0.000003034758,0.0006632776,0.0004011172,0.000003265581],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001087314,"about_ca_system_score_gemma":0.0002470591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004669958,"about_ca_topic_score_gemma":0.0007525964,"domain_scores_codex":[0.9972976,0.000663128,0.0007957686,0.0005482347,0.00005476204,0.0006404519],"domain_scores_gemma":[0.9985836,0.00003920508,0.0004823497,0.0007913607,0.00006980533,0.0000336409],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001591672,0.0001256043,0.00764593,0.004071281,0.0007313963,0.00001367529,0.0001290222,0.000006844224,0.8843676,0.00001396661,0.06078998,0.04194557],"study_design_scores_gemma":[0.0003859842,0.0001012669,0.0001358926,0.0006208473,0.00003835787,0.00001415475,0.00003412564,5.005716e-7,0.004023495,0.00004827124,0.9943488,0.0002482883],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04922326,0.9475289,0.00004031854,0.00003056886,0.001477478,0.001128931,0.0004247607,0.00000375623,0.0001420257],"genre_scores_gemma":[0.0005775137,0.9967998,0.0002295885,0.00003042981,0.0001720624,0.0001682871,0.0004977035,0.00004138942,0.001483239],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9335588,"threshold_uncertainty_score":0.8515188,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2149571529","doi":"10.1128/aac.46.8.2668-2670.2002","title":"Chemiosmotic Mechanism of Antimicrobial Activity of Ag <sup>+</sup> in <i>Vibrio cholerae</i>","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":741,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; American Lebanese Syrian Associated Charities; National Cancer Institute; Manitoba Health Research Council","keywords":"Vibrio cholerae; Antimicrobial; Microbiology; Vibrionaceae; Mechanism of action; Chemistry; Bacteria; Biology; Biochemistry; In vitro; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.0149833420675594,"gpt":0.2449192704992495,"spread":0.2299359284316901,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001460188,0.0002456336,0.0004297518,0.00008534289,0.00005434902,0.00001852908,0.000221417,0.0001726371,0.00009734145],"category_scores_gemma":[0.00002595998,0.0002377646,0.0001309712,0.0001578531,0.0002189951,0.00001389886,0.0001608122,0.0001206329,0.000003122634],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001498903,"about_ca_system_score_gemma":0.0000241862,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001016049,"about_ca_topic_score_gemma":0.00001359577,"domain_scores_codex":[0.9986987,0.00005689881,0.0003267487,0.0004143239,0.0001365232,0.000366787],"domain_scores_gemma":[0.9993823,0.00001194282,0.0001550199,0.0003102751,0.00007562654,0.00006481582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001713324,0.0004139635,0.003768662,0.0001334567,0.0001177708,0.000003270591,0.0003454557,0.00002205573,0.9852675,0.000009703543,0.007285238,0.002461553],"study_design_scores_gemma":[0.002401676,0.0001840786,0.00574218,0.00008414017,0.00001296344,0.0000118643,0.00001796725,0.0002575234,0.9873419,0.00001083383,0.003699748,0.000235097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99833,0.00005939018,0.00007870976,0.0007865178,0.0000440988,0.000274614,0.00006196527,0.000007451544,0.000357241],"genre_scores_gemma":[0.9941796,0.004163602,0.000312103,0.0008975687,0.00008463486,0.000004864077,0.00002166012,0.00003379019,0.0003021907],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004150425,"threshold_uncertainty_score":0.969576,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2168737114","doi":"10.1073/pnas.0813360106","title":"Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":642,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Type VI secretion system; Secretion; Bacteriophage; Cell envelope; Extracellular; Biology; Secretory protein; Cell biology; Membrane protein; Membrane; Biochemistry; Escherichia coli; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03841859615095437,"gpt":0.3281607612680631,"spread":0.2897421651171087,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004471164,0.00007474612,0.0001058027,0.00005520232,0.0001908273,0.00001874982,0.0002981145,0.00007329066,0.000005215061],"category_scores_gemma":[0.0004690636,0.00005355678,0.00003102971,0.0003153607,0.0004612321,0.00002660928,0.000132333,0.00008304765,4.614842e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002062615,"about_ca_system_score_gemma":0.00003286136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004622997,"about_ca_topic_score_gemma":2.287991e-7,"domain_scores_codex":[0.9990374,0.00001070539,0.0001558298,0.0001894293,0.0004741262,0.0001325301],"domain_scores_gemma":[0.9994929,0.00001263837,0.0001787076,0.000007342817,0.0002821947,0.00002625222],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004045415,0.00003406519,0.003468092,0.00001872945,0.00001398859,4.424679e-9,0.00002994609,0.000004493762,0.9925044,0.002550384,0.001220261,0.0001152419],"study_design_scores_gemma":[0.0003345669,0.0004191501,0.4019091,0.0000981037,0.000007330638,0.000005405594,0.0001062368,0.0004514892,0.5819808,0.01346508,0.001102503,0.0001202727],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960545,0.0004619909,2.832756e-7,0.001611617,0.000005594838,0.0002159561,0.00003172696,0.000005342554,0.001612999],"genre_scores_gemma":[0.9993009,0.00005916398,0.0003140966,0.0001007502,0.00004764747,0.000007734156,0.000003723758,0.000002141368,0.0001638538],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4105236,"threshold_uncertainty_score":0.2183982,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1988160370","doi":"10.1007/s11538-010-9507-6","title":"Multiple Transmission Pathways and Disease Dynamics in a Waterborne Pathogen Model","year":2010,"lang":"en","type":"article","venue":"Bulletin of Mathematical Biology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":437,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"","keywords":"Basic reproduction number; Waterborne diseases; Transmission (telecommunications); Biology; Pathogen; Cryptosporidium; Outbreak; Epidemic model; Transmission rate; Infectious disease (medical specialty); Compartment (ship); Disease transmission; Biological system; Ecology; Statistical physics; Disease; Virology; Microbiology; Physics; Computer science; Telecommunications; Population; Medicine; Environmental health","retraction":null,"screen_n_in":null,"score":{"opus":0.01094801242572637,"gpt":0.2451965976858763,"spread":0.2342485852601499,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002601748,0.0001291674,0.0002198804,0.00003634554,0.0000284172,0.000005503355,0.0001381928,0.0001554633,0.00006035663],"category_scores_gemma":[0.0007455948,0.00009733545,0.00005213559,0.00002348562,0.0002683831,7.860543e-7,0.0001842391,0.0001240897,0.00000784326],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006304408,"about_ca_system_score_gemma":0.00003811677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007180777,"about_ca_topic_score_gemma":0.00001752287,"domain_scores_codex":[0.9991198,0.00005869729,0.0002426082,0.0002755319,0.00006153482,0.000241865],"domain_scores_gemma":[0.9994688,0.00006358008,0.00004049393,0.0002268385,0.00004109714,0.0001591807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002182983,0.0001846214,0.002062176,0.0001402573,0.00001496953,0.000004364194,0.00005236613,0.000005755394,0.988641,0.006344643,0.0001506037,0.002180973],"study_design_scores_gemma":[0.01356809,0.002971901,0.02276893,0.0004956846,0.0001638013,0.00009562766,0.0005618486,0.2905931,0.3374563,0.2600751,0.06850577,0.00274388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924893,0.0001405154,0.004724061,0.001710876,0.00001756783,0.0002308144,0.000109399,0.000008106088,0.000569389],"genre_scores_gemma":[0.9876415,0.0001420977,0.01189464,0.0000654755,0.00002380296,0.00004068884,0.00008944828,0.0000137743,0.00008858696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6511847,"threshold_uncertainty_score":0.3969224,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2064392740","doi":"10.1073/pnas.1012931107","title":"The <i>Vibrio cholerae</i> type VI secretion system displays antimicrobial properties","year":2010,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":423,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates; Fondation pour la Recherche Médicale; University of Alberta","keywords":"Vibrio cholerae; Microbiology; Type VI secretion system; Virulence; Biology; Escherichia coli; Cholera; El Tor; Bacteria; Cholera toxin; Vibrionaceae; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02418593967694223,"gpt":0.2804872494883469,"spread":0.2563013098114046,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009362721,0.00007604262,0.00008349011,0.00003021023,0.0004258409,0.00005128647,0.0006804856,0.00007639251,0.000001205237],"category_scores_gemma":[0.0004888065,0.00003898372,0.0000511022,0.0002262715,0.001125065,0.00002281369,0.0002818068,0.0001404226,0.000001313399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001110938,"about_ca_system_score_gemma":0.00005355826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004442411,"about_ca_topic_score_gemma":5.303684e-7,"domain_scores_codex":[0.9989575,0.000007620241,0.000184759,0.0001839072,0.0005119324,0.0001542845],"domain_scores_gemma":[0.999356,0.00001792821,0.0001905332,0.00001343067,0.0003997973,0.00002225832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003864663,0.000009536209,0.001814428,0.00004561068,0.00001490858,1.252384e-9,0.00003191447,0.000004973303,0.9935257,0.002873564,0.00157208,0.00006860687],"study_design_scores_gemma":[0.0001022882,0.00006015139,0.01953766,0.00004780057,0.000005117269,0.000009573276,0.0000983777,0.0001768267,0.9770218,0.0001600988,0.002721789,0.00005856018],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952778,0.0001134421,3.472837e-7,0.002040544,0.00007412658,0.0001667284,0.000009957545,0.00000497714,0.002312135],"genre_scores_gemma":[0.9992635,0.00008405618,0.0001447771,0.00007522348,0.0002068276,0.000009078978,3.73633e-7,0.000003938736,0.0002122038],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01772323,"threshold_uncertainty_score":0.4145348,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120990306","doi":"10.1093/emboj/cdg159","title":"Virulence factors of the human opportunistic pathogen Serratia marcescens identified by in vivo screening","year":2003,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":375,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"University of British Columbia","keywords":"Serratia marcescens; Boulevard; Humanities; Biology; Library science; Art history; Art; Archaeology; History","retraction":null,"screen_n_in":null,"score":{"opus":0.02879832116219534,"gpt":0.2855291415586778,"spread":0.2567308203964824,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006559902,0.0001128964,0.0001293745,0.00002654664,0.0003040284,0.00004527883,0.0004249108,0.00004350009,0.00008542757],"category_scores_gemma":[0.0002726681,0.00006399965,0.00008724545,0.00008853323,0.0001752959,0.000005697586,0.0001491836,0.0002272934,7.354323e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001460803,"about_ca_system_score_gemma":0.00007005817,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002402507,"about_ca_topic_score_gemma":0.00006316957,"domain_scores_codex":[0.9987833,0.0003498678,0.0002550606,0.0001310539,0.000228286,0.0002523868],"domain_scores_gemma":[0.9994106,0.00002035659,0.0001613039,0.0002770865,0.00007019038,0.00006042637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001153292,0.00002243419,0.02214011,0.000006438572,0.00004338114,0.000004067032,0.00016264,0.00000915049,0.9745519,0.00004165576,0.002952473,0.00005419253],"study_design_scores_gemma":[0.0009565771,0.0002075225,0.1035339,0.0001258574,0.00004815946,0.0001294034,0.001887705,0.00002592292,0.879089,0.0006038746,0.0130864,0.0003057056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984303,0.0002728717,0.0002391556,0.0001424655,0.0001293835,0.0001111078,0.00003549996,0.000001786975,0.0006374568],"genre_scores_gemma":[0.9986667,0.0001528365,0.00004103977,0.00004902907,0.00004995451,0.000002927887,0.000005580211,0.00001183073,0.001020112],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09546295,"threshold_uncertainty_score":0.260983,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2108687405","doi":"10.1016/j.chom.2014.07.007","title":"A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism","year":2014,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":372,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institute of Allergy and Infectious Diseases; Josephine De Karman Fellowship Trust; Howard Hughes Medical Institute; National Institutes of Health; National Science Foundation","keywords":"Bacteroidetes; Biology; Secretion; Antagonism; Type VI secretion system; Bacteria; Phylum; Microbiology; Genetics; Gene; 16S ribosomal RNA; Biochemistry; Virulence; Receptor","retraction":null,"screen_n_in":null,"score":{"opus":0.005709494758725385,"gpt":0.2264569409878502,"spread":0.2207474462291248,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002754912,0.0002346592,0.000247415,0.00008161076,0.00007135724,0.00006090489,0.0002789268,0.0002103625,0.000129089],"category_scores_gemma":[0.000193634,0.0002194919,0.00008103091,0.0001337401,0.0001430031,0.000008666672,0.0003552636,0.000172773,0.0001520807],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003341926,"about_ca_system_score_gemma":0.00007589284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000454847,"about_ca_topic_score_gemma":0.00007713499,"domain_scores_codex":[0.9985443,0.0001604241,0.0003107676,0.0004440051,0.00009532361,0.0004451459],"domain_scores_gemma":[0.9993206,0.00003391587,0.00009171508,0.0003511767,0.0001038285,0.00009876327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001257731,0.00006595173,0.002325598,0.00003280038,0.00002769047,0.000004532345,0.0001871553,9.894487e-7,0.9958544,0.00000641767,0.0008537178,0.0005149165],"study_design_scores_gemma":[0.001020654,0.0003767597,0.008159685,0.00002957226,0.000005827296,0.00000601294,0.0000549446,0.0000168015,0.927056,0.00002544387,0.0629992,0.0002490579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971723,0.000611169,0.00002385983,0.0001514009,0.0006606736,0.0002112141,0.00003849715,0.00002341279,0.001107489],"genre_scores_gemma":[0.9975788,0.0004342931,0.0001507356,0.0001447343,0.0003049521,0.00001804149,0.0005493949,0.00003973639,0.0007793177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06879842,"threshold_uncertainty_score":0.8950619,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117544046","doi":"10.1073/pnas.0809654105","title":"Environmental signatures associated with cholera epidemics","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":320,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Esri (Canada)","funders":"National Institute of Allergy and Infectious Diseases; National Oceanic and Atmospheric Administration; National Institutes of Health","keywords":"Cholera; Vibrio cholerae; Environmental science; Zooplankton; Geography; Outbreak; Population; Algal bloom; Plankton; Ecology; Biology; Phytoplankton; Environmental health","retraction":null,"screen_n_in":null,"score":{"opus":0.03219810027258517,"gpt":0.2851563754372153,"spread":0.2529582751646301,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004285006,0.00006532024,0.00008760852,0.00003704083,0.0001816753,0.000004760106,0.0003916726,0.00006691269,0.000004120144],"category_scores_gemma":[0.0005332652,0.00003958929,0.00003989376,0.0001599463,0.001216004,0.00001487341,0.0001582444,0.00009257446,2.904527e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001599209,"about_ca_system_score_gemma":0.00002300393,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":8.556968e-7,"about_ca_topic_score_gemma":4.147282e-8,"domain_scores_codex":[0.998961,0.000005468186,0.0001287897,0.0001660174,0.0006171802,0.0001215703],"domain_scores_gemma":[0.9996897,0.00002741874,0.0001837486,0.000005540936,0.00007231203,0.00002125376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001921086,0.00003055663,0.0290583,0.00000465173,0.00003109345,5.486795e-9,0.00005533442,0.00005664371,0.9695541,0.0001981431,0.0009580983,0.00003386353],"study_design_scores_gemma":[0.0001539205,0.00009181745,0.4124727,0.00001891949,0.000003552351,0.000004627124,0.00003884778,0.00005725348,0.5863682,0.0003171699,0.0004219792,0.00005099228],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976771,0.0002005538,3.912189e-7,0.0008838816,0.000004193137,0.00008499325,0.00002306227,0.000002348184,0.001123468],"genre_scores_gemma":[0.9991598,0.000145983,0.0002459332,0.0002195684,0.00004444942,0.000005585524,6.474988e-7,0.000003026662,0.0001749676],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3834144,"threshold_uncertainty_score":0.4480418,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2131934935","doi":"10.1073/pnas.1222783110","title":"Identification of T6SS-dependent effector and immunity proteins by Tn-seq in <i>Vibrio cholerae</i>","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":312,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Type VI secretion system; Vibrio cholerae; Effector; Biology; Transposon mutagenesis; Mutagenesis; Mutant; Genetics; Cell biology; Microbiology; Virulence; Transposable element; Gene; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01689406750081465,"gpt":0.2909281800140897,"spread":0.274034112513275,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009724888,0.00006453803,0.0001065397,0.00006442401,0.00007465367,0.00002090007,0.0004067776,0.00006112271,0.000003554741],"category_scores_gemma":[0.0006020974,0.00004545648,0.0000287211,0.000211,0.0006279629,0.0000395728,0.0002518816,0.0000845196,5.848869e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001233183,"about_ca_system_score_gemma":0.00002062353,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004607522,"about_ca_topic_score_gemma":3.891752e-7,"domain_scores_codex":[0.9989674,0.00001360162,0.0002576036,0.0001743336,0.0004787496,0.0001082891],"domain_scores_gemma":[0.9994436,0.00002451823,0.0002614705,0.00001174509,0.0002383431,0.00002034678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000103808,0.00004519328,0.01069407,0.00006524125,0.00001002126,4.748767e-10,0.0000522026,0.000002481149,0.9884158,0.0001604027,0.0003428636,0.0002013342],"study_design_scores_gemma":[0.0001458696,0.0000655244,0.2038498,0.00002717133,0.000001858789,8.237747e-7,0.00005912669,0.00004531241,0.7948244,0.0008978956,0.00004556282,0.00003660721],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979765,0.0003159775,9.355962e-7,0.001008913,0.000006352331,0.0003703988,0.00002427417,0.000001539695,0.0002950597],"genre_scores_gemma":[0.999516,0.000145365,0.0001191864,0.00003585035,0.00001888184,0.00004693625,6.527177e-7,0.000002536002,0.0001146061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1935914,"threshold_uncertainty_score":0.2313755,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2127683898","doi":"10.1016/j.mib.2008.11.010","title":"The type VI secretion system: translocation of effectors and effector-domains","year":2009,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":310,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"","keywords":"Effector; Type VI secretion system; Biology; Secretion; Cell envelope; Cell biology; Cytosol; Bacteria; Bacteriophage; Host (biology); Transport protein; Flagellum; Microbiology; Virulence; Genetics; Biochemistry; Escherichia coli; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03484254324981851,"gpt":0.3628211565066198,"spread":0.3279786132568013,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005343529,0.0002849409,0.0007453608,0.0001135481,0.00008183067,0.00001419456,0.000237311,0.000325966,0.000001110285],"category_scores_gemma":[0.0001322253,0.0001909392,0.0001534726,0.0001778907,0.0002386435,0.000002139764,0.0001095454,0.000227037,0.000006898192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006282101,"about_ca_system_score_gemma":0.0001311934,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005000727,"about_ca_topic_score_gemma":0.000007873547,"domain_scores_codex":[0.9979509,0.0008303912,0.0004917487,0.0004037323,0.00004573054,0.0002775129],"domain_scores_gemma":[0.9991832,0.000141113,0.0002537914,0.0003083264,0.00007700508,0.00003655429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001067729,0.00006199529,0.00007521895,0.03074132,0.0001957329,2.935976e-7,0.00003335947,7.003698e-7,0.05663752,0.0001378149,0.001808803,0.9102005],"study_design_scores_gemma":[0.0003430061,0.0004641743,0.00009335157,0.006858934,0.00004677454,0.00003248491,0.000009353669,0.000001674551,0.0002608545,0.000002411149,0.9916948,0.0001921571],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002097541,0.9945796,0.0000465689,0.00001134292,0.002162674,0.0009985389,0.00008744445,0.000007665847,0.000008682763],"genre_scores_gemma":[0.001553195,0.9963054,0.00001114576,0.000001045257,0.0002853962,0.00008749698,0.001731046,0.00001917759,0.000006107362],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.989886,"threshold_uncertainty_score":0.7786273,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2020889689","doi":"10.1038/nrm1104","title":"Phagocyte sabotage: disruption of macrophage signalling by bacterial pathogens","year":2003,"lang":"en","type":"review","venue":"Nature Reviews Molecular Cell Biology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":302,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Macrophage; Immune system; Phagocyte; Biology; Signalling; Phagocytosis; First line; Microbiology; Cell biology; Immunology; Genetics; Medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01701032151013304,"gpt":0.335452573686555,"spread":0.3184422521764219,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0009639263,0.001048651,0.003186264,0.0001674559,0.00009878971,0.00003339694,0.0008239652,0.002668618,0.0001223014],"category_scores_gemma":[0.0004399409,0.0008178621,0.001575645,0.0003890418,0.0003002296,0.000005321795,0.0004494447,0.001197447,0.00006244496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008217887,"about_ca_system_score_gemma":0.0002864362,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003154829,"about_ca_topic_score_gemma":0.000002226154,"domain_scores_codex":[0.9938731,0.002288558,0.001438713,0.001361836,0.000225369,0.0008124642],"domain_scores_gemma":[0.9974568,0.00005374036,0.001028595,0.001069001,0.0001894625,0.0002023281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002357045,0.00008185321,8.935104e-7,0.008328807,0.0002500422,0.00001892613,0.00000311086,1.983586e-7,0.6131071,0.00001903719,0.001178354,0.3769881],"study_design_scores_gemma":[0.0003623134,0.0003430748,1.515287e-7,0.001265477,0.000567894,0.00002285798,0.000001544075,3.267228e-7,0.03465959,0.000006192314,0.9621176,0.000653036],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000285663,0.9946917,0.0007199764,0.000007495907,0.0006318851,0.002020005,0.0008704294,0.00001458954,0.0007582026],"genre_scores_gemma":[0.0002055695,0.9913265,0.001107274,0.0001073284,0.000332315,0.0002858532,0.006078343,0.0001425878,0.0004142705],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9609392,"threshold_uncertainty_score":0.9994272,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2007960706","doi":"10.1016/j.chom.2009.02.005","title":"Translocation of a Vibrio cholerae Type VI Secretion Effector Requires Bacterial Endocytosis by Host Cells","year":2009,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":280,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Secretion; Biology; Type VI secretion system; Effector; Vibrio cholerae; Cell biology; Endocytosis; Microbiology; Endocytic cycle; Internalization; Vibrio; Virulence; Chromosomal translocation; Cytosol; Vibrio vulnificus; Bacteria; Cell; Biochemistry; Gene; Enzyme; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.00653361131333999,"gpt":0.2409568720708741,"spread":0.2344232607575341,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001604288,0.0002345172,0.0002700674,0.00005640348,0.0000847938,0.0000429929,0.0002311053,0.0001774407,0.00008929915],"category_scores_gemma":[0.00004223324,0.0002321031,0.0001194736,0.0001424654,0.0001114856,0.00001227487,0.00006710305,0.0001000623,0.00004192303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003678851,"about_ca_system_score_gemma":0.00008239283,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004305125,"about_ca_topic_score_gemma":0.00001329187,"domain_scores_codex":[0.9986641,0.000120718,0.0002983359,0.0004165283,0.0001431348,0.0003571279],"domain_scores_gemma":[0.9992328,0.00001863702,0.0001314428,0.0003632818,0.0001616341,0.00009215774],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004504587,0.0001416048,0.00006118303,0.00006435347,0.0000382217,0.000001225353,0.0001280054,0.000001260236,0.9909057,0.000001004862,0.007283436,0.000923534],"study_design_scores_gemma":[0.001069543,0.0009855911,0.002077204,0.00003994886,0.00002459727,0.000002667576,0.00002032252,0.000003947889,0.9667662,0.00000165692,0.02878967,0.0002186328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963391,0.001969077,0.0002715434,0.0001619158,0.0002696856,0.0004173741,0.000191796,0.00001875918,0.0003607473],"genre_scores_gemma":[0.9961074,0.001891345,0.0002483475,0.0001180542,0.00025597,0.00001321526,0.0007555292,0.00002745847,0.0005826669],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02413949,"threshold_uncertainty_score":0.946489,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2120580702","doi":"10.1073/pnas.98.2.652","title":"The evolutionary history of chromosomal super-integrons provides an ancestry for multiresistant integrons","year":2001,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":255,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"","keywords":"Integron; Biology; Genetics; Integrase; Gene; Phylogenetic tree; Genome; Gene cassette; Antibiotic resistance; Vibrio cholerae; Plasmid; Resistome; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.06965891267148741,"gpt":0.3365041148637861,"spread":0.2668452021922987,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007856748,0.00008904635,0.0001175684,0.00004985057,0.0002325836,0.000009486497,0.0008041845,0.00007310665,0.000003405574],"category_scores_gemma":[0.001257612,0.00005143582,0.00009256677,0.0001533035,0.002156504,0.0000407573,0.0001838686,0.00008930115,1.192724e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008040677,"about_ca_system_score_gemma":0.000214951,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001543938,"about_ca_topic_score_gemma":0.00000241149,"domain_scores_codex":[0.9987809,0.000011686,0.0002623301,0.0002273776,0.0005341262,0.0001835453],"domain_scores_gemma":[0.9991173,0.00008734797,0.0002452343,0.00001810065,0.0005001203,0.00003188209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001250372,0.00006132181,0.00500425,0.00004687325,0.00002758646,3.936643e-9,0.00009964302,0.00000912817,0.9862225,0.004313633,0.003718477,0.0003715624],"study_design_scores_gemma":[0.0005803867,0.0008377327,0.1726958,0.0001489789,0.00002701847,0.00002010522,0.001692145,0.001796648,0.7715641,0.007827137,0.04259013,0.0002198997],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945533,0.001702509,0.000003115793,0.001881618,0.00003667515,0.0002832247,0.00005019706,0.000004022816,0.00148531],"genre_scores_gemma":[0.9975336,0.0003083779,0.001278475,0.00004495274,0.0001179406,0.00004969109,0.000001074217,0.000004549104,0.0006613143],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2146584,"threshold_uncertainty_score":0.7945731,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2153621410","doi":"10.1016/s0140-6736(09)61297-6","title":"Efficacy and safety of a modified killed-whole-cell oral cholera vaccine in India: an interim analysis of a cluster-randomised, double-blind, placebo-controlled trial","year":2009,"lang":"en","type":"article","venue":"The Lancet","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":248,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"Styrelsen för Internationellt Utvecklingssamarbete; Bill and Melinda Gates Foundation","keywords":"Cholera vaccine; Medicine; Cholera; Placebo; Interim analysis; Cluster randomised controlled trial; Population; Vaccination; Clinical endpoint; Vaccine trial; Adverse effect; Internal medicine; Pediatrics; Randomized controlled trial; Immunology; Virology; Vibrio cholerae; Environmental health; Alternative medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.03058615346666061,"gpt":0.3266725294714068,"spread":0.2960863760047462,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001020977,0.0001752593,0.001161065,0.0001751681,0.00004190376,0.0000217583,0.0003416978,0.0001089558,0.00001022069],"category_scores_gemma":[0.0001583239,0.0001150683,0.000163938,0.0003169311,0.00007456373,0.000007413381,0.0001423486,0.0001434711,4.229853e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001241429,"about_ca_system_score_gemma":0.00004071401,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003845397,"about_ca_topic_score_gemma":0.00008192916,"domain_scores_codex":[0.9984775,0.0002984463,0.0005158364,0.0002822954,0.0001533074,0.0002726098],"domain_scores_gemma":[0.9990061,0.00009580331,0.0002292483,0.000539774,0.00007293266,0.00005614603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.8561395,0.0003180382,0.0001844047,0.00001515933,0.0006832805,0.000001305523,0.000381557,0.0004126928,0.1413607,0.000009493144,0.00008659366,0.0004072557],"study_design_scores_gemma":[0.974724,0.001482669,0.01243659,0.00001720263,0.0003582058,8.578983e-7,0.00005551894,0.0008230752,0.009780795,0.000009405524,0.0001833724,0.0001283206],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964039,0.0002914078,0.00007318502,0.0006514517,0.00003507547,0.001923955,0.00004718143,0.000005823641,0.0005679803],"genre_scores_gemma":[0.9990453,0.0002678783,0.00008819746,0.0001233517,0.0001799339,0.0000858812,0.0001209866,0.000008874556,0.00007965337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1315799,"threshold_uncertainty_score":0.4692349,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2593090067","doi":"10.1073/pnas.1614902114","title":"Manganese scavenging and oxidative stress response mediated by type VI secretion system in <i>Burkholderia thailandensis</i>","year":2017,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":246,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Fundamental Research Funds for the Central Universities; Alberta Innovates; National Natural Science Foundation of China; Government of Canada; Directorate for Biological Sciences; Purdue University","keywords":"Oxidative stress; Manganese; Secretion; Scavenging; Chemistry; Microbiology; Biology; Biochemistry; Antioxidant; Organic chemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02537045748323142,"gpt":0.3063456621448623,"spread":0.2809752046616309,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001263949,0.00006603007,0.0001006195,0.00006046956,0.0002174094,0.00003888625,0.000404534,0.00006791494,8.212377e-7],"category_scores_gemma":[0.001554558,0.0000459516,0.0000188024,0.0001144947,0.0006057358,0.00003294653,0.0002717155,0.00006846009,2.168308e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001664528,"about_ca_system_score_gemma":0.00002284453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001026826,"about_ca_topic_score_gemma":5.308316e-7,"domain_scores_codex":[0.999154,0.00001740807,0.0001399016,0.0001894509,0.0003863856,0.000112828],"domain_scores_gemma":[0.9994971,0.00004543463,0.0002371397,0.00001316474,0.0001840504,0.00002318426],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000152301,0.000009145276,0.01910681,0.00004679138,0.00001173094,1.335981e-8,0.00007329454,0.000002552251,0.9801995,0.0001641762,0.0002114455,0.00002219853],"study_design_scores_gemma":[0.0002393638,0.0000753058,0.1988147,0.0001325276,0.000003356359,0.000003288621,0.0004212921,0.0002363986,0.7997891,0.0001208842,0.0001079038,0.00005584577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983045,0.0002233234,2.35768e-7,0.0008432771,0.00001239211,0.0001195214,0.00003656298,0.000002503386,0.0004576156],"genre_scores_gemma":[0.9996983,0.0001078258,0.00006951273,0.00002348976,0.0000272508,0.000005945719,0.000001065832,0.000002846479,0.00006376464],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1804104,"threshold_uncertainty_score":0.2231859,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2127129546","doi":"10.1099/jmm.0.023051-0","title":"Antibiotic resistance mechanisms of Vibrio cholerae","year":2011,"lang":"en","type":"review","venue":"Journal of Medical Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":246,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Vibrio cholerae; Cholera; Antibiotics; Microbiology; Antibiotic resistance; Vibrionaceae; Biology; Plasmid; Multiple drug resistance; Efflux; El Tor; Drug resistance; Virology; Bacteria; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.03250850045867282,"gpt":0.3343697627909173,"spread":0.3018612623322445,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001424625,0.0003494271,0.002049023,0.0002028537,0.00003775582,0.000008627665,0.00123247,0.001111703,0.0001909295],"category_scores_gemma":[0.001162531,0.0002383284,0.0007466757,0.0001376074,0.0004931447,0.00000324039,0.0005280349,0.0007314401,0.000017379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004055386,"about_ca_system_score_gemma":0.001063179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004195104,"about_ca_topic_score_gemma":0.0000170866,"domain_scores_codex":[0.9971554,0.0005340748,0.001343318,0.0003267413,0.0002338117,0.0004066774],"domain_scores_gemma":[0.9976245,0.00008747677,0.001376887,0.000391916,0.000292984,0.0002262367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005594004,0.0007953991,0.000009399579,0.02773833,0.006097174,0.0004778378,0.00008527229,9.233776e-8,0.3369354,0.001404437,0.06012796,0.5657693],"study_design_scores_gemma":[0.0004875234,0.0006204717,0.000003950047,0.006268192,0.0002511035,0.001004556,0.000008592355,2.924956e-8,0.004115371,0.00007094073,0.9869671,0.0002021529],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000216381,0.9978476,0.000601688,0.0001384709,0.0007248035,0.0001964937,0.00007951772,0.000002671498,0.0001923957],"genre_scores_gemma":[0.0001995565,0.9977616,0.0008507483,0.00008527789,0.0005174027,0.000002469031,0.00006621519,0.00004008353,0.0004766241],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9268392,"threshold_uncertainty_score":0.9718751,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062932606","doi":"10.1078/1438-4221-00197","title":"The role of integrons in antibiotic resistance gene capture","year":2002,"lang":"en","type":"review","venue":"International Journal of Medical Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":241,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto; Women's College Hospital","funders":"Fondation pour le Progrès en Microbiologie Médicale et Maladies Infectieuses; Centre National de la Recherche Scientifique; Institut Pasteur","keywords":"Biology; Antibiotic resistance; Gene; Horizontal gene transfer; Genetics; Integron; Antibiotics; Microbial genetics; Genome; Evolutionary biology","retraction":null,"screen_n_in":null,"score":{"opus":0.01472604580670347,"gpt":0.3288749529914161,"spread":0.3141489071847126,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000853927,0.0001962625,0.0007455348,0.0001596588,0.00002571182,0.00001602886,0.001683016,0.0005023589,0.00004562175],"category_scores_gemma":[0.001607564,0.0001150159,0.0003612322,0.00008404085,0.000452943,0.000002815393,0.0004108918,0.0006729177,0.000006134504],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008238586,"about_ca_system_score_gemma":0.0005512434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001543664,"about_ca_topic_score_gemma":0.0001551626,"domain_scores_codex":[0.9979342,0.0003715023,0.0009550886,0.0001937194,0.0003101442,0.0002353958],"domain_scores_gemma":[0.9984854,0.0002090804,0.0006979912,0.0001890152,0.0003401533,0.00007837533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002311175,0.000280139,0.00007132857,0.0006566895,0.002483042,0.0003381638,0.00007942053,6.752884e-7,0.03146773,0.0002842318,0.01525177,0.9488557],"study_design_scores_gemma":[0.0003123889,0.00008484772,0.00001032594,0.002498688,0.0000405162,0.0007507415,0.00003546772,4.879846e-7,0.0008762298,0.00003187633,0.9952658,0.00009256467],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0006633446,0.9973507,0.00002196924,0.0008024574,0.0007609152,0.0001097917,0.00008920691,9.976966e-7,0.0002006014],"genre_scores_gemma":[0.002599514,0.9963477,0.0001023607,0.00004669866,0.0005443342,0.000002972503,0.00006520094,0.00001657047,0.0002745958],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9800141,"threshold_uncertainty_score":0.4690211,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2137904184","doi":"10.1016/s1473-3099(13)70273-1","title":"5 year efficacy of a bivalent killed whole-cell oral cholera vaccine in Kolkata, India: a cluster-randomised, double-blind, placebo-controlled trial","year":2013,"lang":"en","type":"article","venue":"The Lancet Infectious Diseases","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":240,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Medicine; Cholera; Cholera vaccine; Placebo; Population; Regimen; Vaccine trial; Vaccination; Internal medicine; Vaccine efficacy; Cluster randomised controlled trial; Pediatrics; Randomized controlled trial; Immunology; Vibrio cholerae; Virology; Environmental health","retraction":null,"screen_n_in":null,"score":{"opus":0.01637448623814585,"gpt":0.2872460334764319,"spread":0.270871547238286,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004165864,0.0002727435,0.0008050277,0.0001242294,0.0001027232,0.00007425933,0.0003707276,0.000115737,0.0001114871],"category_scores_gemma":[0.0004731217,0.0001806622,0.0002817343,0.0002021582,0.0001070204,0.00001481039,0.0002997084,0.0001929328,0.00006372474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003711179,"about_ca_system_score_gemma":0.0001264071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001761881,"about_ca_topic_score_gemma":0.00007928368,"domain_scores_codex":[0.9980654,0.0003579487,0.0004759486,0.0003651551,0.0002467319,0.0004888591],"domain_scores_gemma":[0.9986825,0.0002193157,0.0002256568,0.0006176707,0.000132396,0.0001224438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.9600442,0.001225459,0.01139149,0.00008873942,0.0004333865,0.000003749429,0.0001572564,0.0002051005,0.02042762,0.000007843833,0.005722171,0.0002929579],"study_design_scores_gemma":[0.979021,0.0008809052,0.01575497,0.00003324678,0.0001275577,0.000002427858,0.00004788639,0.00004005173,0.002426045,0.00003511043,0.001404429,0.000226393],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915969,0.0006696713,0.00001284975,0.0006034471,0.0002168528,0.005784408,0.00006081744,0.00003751831,0.001017525],"genre_scores_gemma":[0.9962006,0.0003778643,0.00001317044,0.0002116309,0.0007492724,0.001969247,0.0001196996,0.00003190156,0.0003266424],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01897675,"threshold_uncertainty_score":0.7367189,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2091140896","doi":"10.1016/j.micinf.2011.08.005","title":"Edwardsiella tarda – Virulence mechanisms of an emerging gastroenteritis pathogen","year":2011,"lang":"en","type":"review","venue":"Microbes and Infection","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":230,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Trinity Western University; Western University","funders":"Biomedical Research Council","keywords":"Edwardsiella tarda; Virulence; Biology; Microbiology; Secretion; Quorum sensing; Pathogen; Human pathogen; Virology; Bacteria; Gene; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.02418877631651165,"gpt":0.3050317400211009,"spread":0.2808429637045892,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001605787,0.0002327727,0.0004985642,0.00008097518,0.00007665744,0.00002262071,0.00009866653,0.000172343,0.00002818346],"category_scores_gemma":[0.00002299954,0.000205861,0.0001759404,0.00005948548,0.00007097609,0.000007301556,0.000234626,0.00009791625,0.000003533583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001411414,"about_ca_system_score_gemma":0.00004047644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001735895,"about_ca_topic_score_gemma":0.00007154162,"domain_scores_codex":[0.9989763,0.0001222279,0.0002722985,0.0003588888,0.00005448896,0.0002158006],"domain_scores_gemma":[0.9994649,0.000002953372,0.0001688774,0.0002352567,0.0000693062,0.00005867808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001724887,0.0000651088,0.00002362826,0.004323774,0.0001836038,0.000002772101,0.00002525002,1.794768e-7,0.2423086,0.00002376079,0.0001740053,0.7528521],"study_design_scores_gemma":[0.0001321077,0.0007412974,0.0000550351,0.001455537,0.0001429358,0.0001063114,0.00000982936,0.000001037428,0.01137292,0.00002889082,0.9857371,0.0002169704],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.008365212,0.9889614,0.001835726,0.00000195234,0.0002045386,0.0003202193,0.0001680909,0.00001093818,0.0001319289],"genre_scores_gemma":[0.0007168737,0.9982109,0.000484651,0.000009057253,0.0001303873,0.00003998875,0.0003018511,0.00003000081,0.00007629453],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9855631,"threshold_uncertainty_score":0.8394769,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2117212584","doi":"10.1073/pnas.0803281105","title":"A defined transposon mutant library and its use in identifying motility genes in <i>Vibrio cholerae</i>","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":224,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; Infrastructure Canada","keywords":"Vibrio cholerae; Transposable element; Biology; Mutant; El Tor; Gene; Genome; Genetics; Genomic library; Bacteria; Peptide sequence","retraction":null,"screen_n_in":null,"score":{"opus":0.0712455388101948,"gpt":0.3028219615852302,"spread":0.2315764227750354,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003715936,0.00007078761,0.0001136976,0.0001086843,0.00008246538,0.00001770294,0.0003029122,0.00006262204,0.00000166881],"category_scores_gemma":[0.0002977081,0.0000522216,0.00003209725,0.0003940662,0.0004087812,0.0001269809,0.0001727466,0.00008741693,9.462411e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006080602,"about_ca_system_score_gemma":0.00003260111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006575916,"about_ca_topic_score_gemma":8.85584e-7,"domain_scores_codex":[0.9990482,0.00001007837,0.0002182006,0.0002328315,0.0003525257,0.0001381381],"domain_scores_gemma":[0.9997944,0.00002902323,0.00009547034,0.00000674829,0.00005161539,0.00002273702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002644653,0.00002209746,0.233664,0.00003792834,0.000004060276,2.250074e-8,0.00008338565,0.00001303534,0.7657382,0.0003629104,0.00001247338,0.00003535431],"study_design_scores_gemma":[0.0001541154,0.00001907945,0.5051165,0.00003233726,8.665859e-7,0.000004874117,0.00002213974,0.0001076197,0.4941193,0.0003424287,0.0000507417,0.00003000115],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981188,0.0005887887,1.348336e-7,0.0009346944,0.000005463007,0.0001394011,0.00001615728,0.000002484203,0.0001940621],"genre_scores_gemma":[0.9981214,0.001368742,0.0003476324,0.00009036026,0.00002140661,0.000008838406,3.796605e-7,0.000003081853,0.00003816963],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.271619,"threshold_uncertainty_score":0.2129535,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2121297944","doi":"10.1111/mmi.12571","title":"Genetically distinct pathways guide effector export through the type <scp>VI</scp> secretion system","year":2014,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":215,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Effector; Secretion; Biology; Type VI secretion system; Chaperone (clinical); Cytoplasm; Toxin; Gene; Microbiology; Cell biology; Genetics; Biochemistry; Virulence","retraction":null,"screen_n_in":null,"score":{"opus":0.008734131333743213,"gpt":0.2395906657547881,"spread":0.2308565344210449,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005016348,0.0003395874,0.000344639,0.00003446721,0.0002225325,0.00004646754,0.0005466935,0.000315703,0.00001089538],"category_scores_gemma":[0.0009464418,0.0002453115,0.0001810574,0.0001385614,0.0003984213,0.000003672396,0.0005507437,0.0001933305,0.0001846463],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005153865,"about_ca_system_score_gemma":0.00009132485,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002596093,"about_ca_topic_score_gemma":0.00001540511,"domain_scores_codex":[0.9974712,0.0006924374,0.0003754808,0.0006854813,0.0001115718,0.0006638936],"domain_scores_gemma":[0.9985627,0.0001099238,0.0001396396,0.0008551665,0.0002400941,0.00009248656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002715558,0.00002824949,0.000536599,0.00005768272,0.0001521533,0.00001893886,0.00005216145,0.00001219531,0.9906064,0.0005865114,0.007634192,0.0002877349],"study_design_scores_gemma":[0.0005823974,0.0009342275,0.002394998,0.00002854384,0.00005309427,0.0001531622,0.00009245455,0.00004767211,0.5682831,0.00004409046,0.4272179,0.000168296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9712142,0.001391278,0.02075162,0.00015972,0.0004848517,0.0005499354,0.00007149227,0.00006172872,0.005315186],"genre_scores_gemma":[0.9965909,0.00008376688,0.00104692,0.0005541271,0.0003475882,0.00008967232,0.0007937925,0.0000585768,0.000434724],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4223233,"threshold_uncertainty_score":0.9999999,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1984664666","doi":"10.1038/ismej.2013.182","title":"Positive epistasis between co-infecting plasmids promotes plasmid survival in bacterial populations","year":2013,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":215,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Clarendon Fund; University of Oxford; European Commission; Royal Society","keywords":"Plasmid; Biology; Horizontal gene transfer; Genetics; Bacteria; Epistasis; Gene; Experimental evolution; Bacterial genetics; Microbiology; Escherichia coli; Genome","retraction":null,"screen_n_in":null,"score":{"opus":0.03478673962152704,"gpt":0.3184431552426538,"spread":0.2836564156211267,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005806618,0.0001547917,0.0001961561,0.00006982543,0.0003693517,0.0001734277,0.0002419472,0.00009161688,0.0001502927],"category_scores_gemma":[0.0003804665,0.0001090222,0.00008848488,0.00009311203,0.0001216119,0.00001966306,0.0001641266,0.0003257023,0.00003635051],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005466489,"about_ca_system_score_gemma":0.0000914593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001600909,"about_ca_topic_score_gemma":0.0001116544,"domain_scores_codex":[0.9985852,0.0003295768,0.0003047843,0.0001752409,0.0002128255,0.0003924021],"domain_scores_gemma":[0.999378,0.00009171113,0.0001327733,0.0001699385,0.000128749,0.00009879061],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000962944,0.00007938067,0.2064191,0.00001217051,0.0002697829,0.000007744303,0.0004724692,0.00005103635,0.7856878,0.00003705377,0.002823727,0.004043442],"study_design_scores_gemma":[0.0009938872,0.0003656795,0.8868076,0.00004355438,0.00002627328,0.00006743906,0.0003043077,0.00004652122,0.1092873,0.0006242377,0.001192389,0.0002408527],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966984,0.00003806471,0.0001597105,0.00197903,0.0002410442,0.0002581564,0.00005027071,0.00000743767,0.0005678993],"genre_scores_gemma":[0.9982966,0.00004575581,0.0003085809,0.00003431792,0.001083272,0.00001901683,0.00007057285,0.00002012613,0.0001217281],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6803885,"threshold_uncertainty_score":0.4445798,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171250717","doi":"10.1128/iai.01266-10","title":"Vibrio cholerae Requires the Type VI Secretion System Virulence Factor VasX To Kill Dictyostelium discoideum","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":209,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Vibrio cholerae; Dictyostelium discoideum; Virulence; Type VI secretion system; Biology; Dictyostelium; Virulence factor; Microbiology; Secretion; Cell biology; Mutant; Cholera toxin; Gene; Genetics; Bacteria; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.034351910818637,"gpt":0.2778273550710755,"spread":0.2434754442524385,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002107005,0.0001259526,0.0001068628,0.00003877765,0.0003375553,0.00005119277,0.0001182573,0.00007812827,0.00003120477],"category_scores_gemma":[0.0001802646,0.00008844532,0.0000429891,0.00008996364,0.0001110621,0.00001580029,0.000280529,0.0001329106,0.00003314342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003043744,"about_ca_system_score_gemma":0.00002846185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001452076,"about_ca_topic_score_gemma":0.0002494991,"domain_scores_codex":[0.9991908,0.000187294,0.0001446296,0.0001887896,0.00009777601,0.0001907157],"domain_scores_gemma":[0.999386,0.00001428209,0.00005241015,0.0003416448,0.0001304262,0.00007525827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001784369,0.00004203942,0.0185352,0.00004551468,0.00006954844,7.564627e-7,0.0006861595,0.000001615216,0.9778646,0.00008677181,0.0003066379,0.00218272],"study_design_scores_gemma":[0.0002807578,0.0008726643,0.8202284,0.00005615578,0.00001561904,0.00002279665,0.0003771965,0.00002318542,0.1576584,0.00001351904,0.02024698,0.0002043172],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961205,0.0001756618,0.0005624155,0.00008611955,0.0004285404,0.0002424536,0.00001636799,0.00003207834,0.002335921],"genre_scores_gemma":[0.9990056,0.0004449624,0.00002614562,0.0001109422,0.0001184058,0.00002798774,0.00002285206,0.00001169631,0.0002314642],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8202062,"threshold_uncertainty_score":0.3606696,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2171677430","doi":"10.1038/ncomms4549","title":"The Vibrio cholerae type VI secretion system employs diverse effector modules for intraspecific competition","year":2014,"lang":"en","type":"article","venue":"Nature Communications","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":207,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; National Institutes of Health; Alberta Innovates; University of Alberta; National Institute on Minority Health and Health Disparities; Canadian Institutes of Health Research; University of Rochester; University of Texas at Austin; University of Pennsylvania","keywords":"Vibrio cholerae; Effector; Pilus; Biology; Virulence; Cholera toxin; Type VI secretion system; Microbiology; Secretion; Gene; Pathogenicity island; Cholera; El Tor; Genetics; Bacteria; Cell biology","retraction":null,"screen_n_in":null,"score":{"opus":0.0170397212865667,"gpt":0.2963374124622571,"spread":0.2792976911756904,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003919692,0.0001138412,0.0001102351,0.0000287662,0.0008258022,0.00007644808,0.0006995023,0.0001889938,0.000001855805],"category_scores_gemma":[0.0004051779,0.00008706346,0.00007464052,0.00009870043,0.0001883194,0.000006036726,0.0003713769,0.0002629909,0.00001799295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005558977,"about_ca_system_score_gemma":0.00002865524,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007831884,"about_ca_topic_score_gemma":0.0003320519,"domain_scores_codex":[0.9990958,0.0002687484,0.0001440939,0.0001898172,0.0001148531,0.000186707],"domain_scores_gemma":[0.9980086,0.0002236601,0.00007593467,0.001291328,0.0003535079,0.00004694362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000260251,0.0001017852,0.001300216,0.0001015606,0.0002409889,1.537391e-7,0.0001293361,0.00003614509,0.9115157,0.05843584,0.02164685,0.006231226],"study_design_scores_gemma":[0.0009784161,0.0004552023,0.03564757,0.00008172254,0.00005427877,0.000006660515,0.0003920483,0.00320312,0.01367502,0.0001296476,0.9450692,0.0003070984],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.963255,0.01122329,0.01076547,0.006415262,0.00157011,0.002378867,0.0003457233,0.000191402,0.003854919],"genre_scores_gemma":[0.9957438,0.001216281,0.001424362,0.00007184871,0.0002952254,0.0001588544,0.0009759277,0.00001892435,0.00009482387],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9234223,"threshold_uncertainty_score":0.6351486,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2229090536","doi":"10.1093/nar/gkv1269","title":"EffectiveDB—updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":197,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Hospital for Sick Children","funders":"Austrian Science Fund","keywords":"Biology; RefSeq; Secretion; Bacterial genome size; Genome; Annotation; Computational biology; Metagenomics; Bacterial protein; Genome project; Bacteria; Genetics; Bioinformatics; Gene; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03905644916540325,"gpt":0.3346384994608168,"spread":0.2955820502954135,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001078649,0.0001338456,0.0002095635,0.0001187968,0.0001329283,0.00009376775,0.0001214646,0.0001807548,0.000004485441],"category_scores_gemma":[0.0009775237,0.0001138517,0.00002702757,0.0001519145,0.0003224788,0.00001741184,0.0002831246,0.0001461538,0.000001265736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000337119,"about_ca_system_score_gemma":0.0001127616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001224467,"about_ca_topic_score_gemma":0.00002816707,"domain_scores_codex":[0.9985825,0.0002110943,0.0001671767,0.0003664008,0.000335176,0.0003376427],"domain_scores_gemma":[0.9985998,0.00007558126,0.00005719631,0.0002125851,0.0009220695,0.0001327902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001908038,0.00003419938,0.001447827,0.0001966109,0.00009268126,7.287343e-7,0.0002991596,0.000001574119,0.9927989,0.00006998883,0.002141739,0.001008504],"study_design_scores_gemma":[0.0128176,0.01178089,0.09855222,0.0003013427,0.00006164338,0.00005473453,0.002434104,0.002469671,0.8327292,0.0004622904,0.03761334,0.0007229591],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967694,0.0006243459,0.0006464575,0.0002198507,0.00009908324,0.001395957,0.00009984375,0.000009965725,0.0001351128],"genre_scores_gemma":[0.9980794,0.0001040295,0.0007884679,0.00001138681,0.0003184524,0.0001892143,0.0002835034,0.00002574191,0.000199832],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1600697,"threshold_uncertainty_score":0.4642738,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2026182957","doi":"10.1046/j.1462-5822.2001.00087.x","title":"SifA permits survival and replication of Salmonella typhimurium in murine macrophages","year":2001,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Medical Research Council Canada; Hospital for Sick Children; Killam Trusts; Howard Hughes Medical Institute","keywords":"Biology; Effector; Secretion; Mutant; Cell biology; Transfection; Vacuole; Virulence; Type three secretion system; Salmonella; Endosome; Microbiology; Cytoplasm; Cell culture; Gene; Genetics; Bacteria; Biochemistry; Intracellular","retraction":null,"screen_n_in":null,"score":{"opus":0.01209421248037079,"gpt":0.2575431338975485,"spread":0.2454489214171777,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002520228,0.0001232398,0.0002065912,0.0000656601,0.00003121003,0.000005050953,0.00013843,0.0001420468,0.00002490138],"category_scores_gemma":[0.0001009995,0.0001171411,0.00003776692,0.00009071785,0.0002226311,0.000002231414,0.0002342789,0.00007497189,0.000007360267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000112712,"about_ca_system_score_gemma":0.00002576088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003466912,"about_ca_topic_score_gemma":0.00006591415,"domain_scores_codex":[0.9989702,0.0001199932,0.0002121197,0.0004257205,0.00002722017,0.000244745],"domain_scores_gemma":[0.9994076,0.00001665648,0.00006772773,0.000401154,0.00007016968,0.00003665821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001059212,0.00004829792,0.0136367,0.0000270481,0.00002686285,0.00001305428,0.00002885985,0.000001866643,0.9852842,0.00001853526,0.0001491137,0.0006595043],"study_design_scores_gemma":[0.0005767302,0.0001876552,0.02459113,0.00000818239,0.000006056242,0.00004787136,0.00004697874,0.000004847071,0.9569057,0.00002075681,0.01748214,0.0001219558],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958884,0.003061574,0.00006397089,0.0001994099,0.00007869835,0.0001676564,0.00002281522,0.000005817475,0.0005116168],"genre_scores_gemma":[0.9967976,0.00181871,0.0001178589,0.00002702906,0.00007874749,0.00001149117,0.0002044565,0.00001444897,0.0009296931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02837854,"threshold_uncertainty_score":0.4776877,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2115493975","doi":"10.1111/j.1574-6968.2011.02406.x","title":"Just scratching the surface: an expanding view of the Cpx envelope stress response","year":2011,"lang":"en","type":"review","venue":"FEMS Microbiology Letters","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":189,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Periplasmic space; Cell envelope; Cell biology; Biology; Regulon; Envelope (radar); Folding (DSP implementation); Computational biology; Genetics; Gene; Regulation of gene expression; Computer science; Engineering","retraction":null,"screen_n_in":null,"score":{"opus":0.04875569386322094,"gpt":0.3288212679818147,"spread":0.2800655741185938,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001138504,0.0005309728,0.001014448,0.00006465723,0.0003511214,0.00003573891,0.001625536,0.0004469074,0.00002944598],"category_scores_gemma":[0.0002201782,0.0002845002,0.0004979125,0.0001938073,0.0009105867,0.000006366439,0.001149784,0.0005784592,0.00002045487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005703055,"about_ca_system_score_gemma":0.0002768758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004838372,"about_ca_topic_score_gemma":0.00005358132,"domain_scores_codex":[0.9955063,0.002537161,0.0005986032,0.0006860227,0.00007346547,0.0005984123],"domain_scores_gemma":[0.9979087,0.0001688336,0.0005055396,0.00128321,0.00007258719,0.00006110018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000160207,0.00004984526,0.0001185481,0.001537038,0.0007610155,0.000007002334,0.0003620821,0.000003061598,0.9611361,0.00000607083,0.006166214,0.02969282],"study_design_scores_gemma":[0.0001847368,0.0001134879,0.0001576965,0.001737919,0.000201398,0.00007750656,0.00008994026,6.676132e-8,0.01049118,8.597903e-7,0.9865768,0.0003684057],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1516275,0.8459358,0.00001570888,0.0004612158,0.0006001798,0.0008645576,0.0004552397,0.00001222594,0.00002756963],"genre_scores_gemma":[0.003947864,0.9941871,0.0001200325,0.000652266,0.0002608507,0.00006774304,0.0004165215,0.0000794173,0.000268269],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9804106,"threshold_uncertainty_score":0.9999607,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2061997872","doi":"10.1074/jbc.m404299200","title":"Expression and Secretion of Salmonella Pathogenicity Island-2 Virulence Genes in Response to Acidification Exhibit Differential Requirements of a Functional Type III Secretion Apparatus and SsaL","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Secretion; Virulence; Pathogenicity island; Salmonella; Pathogenicity; Biology; Gene; Microbiology; Type three secretion system; Genetics; Bacteria; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.03031729539692474,"gpt":0.2845604801107004,"spread":0.2542431847137757,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003690946,0.0001029313,0.0002074523,0.00003642666,0.000029967,0.000007259278,0.00007699378,0.0001651349,0.00001345272],"category_scores_gemma":[0.0003542873,0.00007717158,0.00004398698,0.00007555042,0.0001278654,0.00000815237,0.0001288225,0.00009755161,1.447246e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002639514,"about_ca_system_score_gemma":0.00005659284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003335293,"about_ca_topic_score_gemma":0.000001594033,"domain_scores_codex":[0.9990758,0.00008687886,0.0003656932,0.0001881454,0.0001643765,0.0001191171],"domain_scores_gemma":[0.9993752,0.00002669071,0.000246325,0.00009528925,0.000182174,0.00007433649],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006655722,0.0000912807,0.005060422,0.00004011981,0.00001906611,0.000002670895,0.00005094865,0.00004156352,0.9878138,0.000001148388,0.000009044602,0.0002142296],"study_design_scores_gemma":[0.001059421,0.0006260808,0.1013776,0.00008537266,0.000007264734,0.00002679574,0.00009128637,0.000009269867,0.8965459,0.00006774681,0.00003219468,0.00007100894],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975427,0.0007391902,0.00151203,0.0000559886,0.00003253153,0.00008604599,0.00001980477,0.000001434511,0.00001024913],"genre_scores_gemma":[0.9985264,0.001085208,0.0002488027,0.000007489622,0.00008370686,0.000003585258,0.00003070718,0.000003877315,0.00001023457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09631721,"threshold_uncertainty_score":0.3146966,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2964546573","doi":"10.1128/aac.01186-19","title":"Regulatory Mechanisms of the LuxS/AI-2 System and Bacterial Resistance","year":2019,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval","funders":"National Natural Science Foundation of China","keywords":"Antibiotic resistance; Microbiology; Resistance (ecology); Biology; Computational biology; Antibiotics; Ecology","retraction":null,"screen_n_in":null,"score":{"opus":0.01740575211017494,"gpt":0.2814825657149986,"spread":0.2640768136048237,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001516927,0.0003259327,0.0008267829,0.00003489746,0.0001096419,0.00004744883,0.0002850638,0.0002918702,0.00001139797],"category_scores_gemma":[0.000009962842,0.0002142724,0.0002343075,0.00007017287,0.0001899889,0.000004102685,0.0002972387,0.0001211167,0.000002144276],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002126306,"about_ca_system_score_gemma":0.0001194089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007268537,"about_ca_topic_score_gemma":0.00000872801,"domain_scores_codex":[0.9987034,0.0001261291,0.0003416758,0.0004610161,0.0001268809,0.0002409242],"domain_scores_gemma":[0.9991164,0.000009943491,0.0002744957,0.0004972878,0.00005628783,0.00004558402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001032909,0.0003106704,0.0001754703,0.1424046,0.004960977,0.00001361202,0.0002865793,2.42247e-7,0.3510244,0.001930892,0.2021906,0.295669],"study_design_scores_gemma":[0.0005163837,0.00005169596,0.0002012718,0.003245711,0.0001357828,0.00001719162,0.000008621624,2.25716e-7,0.00789981,0.000005858262,0.9876733,0.0002441161],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03583618,0.9603581,0.00005296276,0.0003176708,0.0008930885,0.001775141,0.0004647927,0.00001744104,0.0002845954],"genre_scores_gemma":[0.00405195,0.9935675,0.0000723095,0.0002675415,0.0002024827,0.00001455603,0.00006795701,0.00005610094,0.001699553],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7854827,"threshold_uncertainty_score":0.8737776,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2027150254","doi":"10.1074/jbc.m112.436725","title":"Lytic Activity of the Vibrio cholerae Type VI Secretion Toxin VgrG-3 Is Inhibited by the Antitoxin TsaB","year":2013,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"U.S. Public Health Service","keywords":"Vibrio cholerae; Microbiology; Toxin; Cholera toxin; Lytic cycle; Type VI secretion system; Peptidoglycan; Secretion; Lysis; Chemistry; Anthrax toxin; Bacteria; Biology; Virology; Biochemistry; Virulence; Virus; Fusion protein","retraction":null,"screen_n_in":null,"score":{"opus":0.01815185433524375,"gpt":0.265253067657651,"spread":0.2471012133224073,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003064609,0.0001580547,0.0002425543,0.00001020993,0.000096807,0.00003446089,0.0004586428,0.000237914,0.0002162856],"category_scores_gemma":[0.0005606645,0.00007624407,0.0002025272,0.0001490218,0.0003533167,0.000009774772,0.0003007775,0.0003389359,0.000005634087],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003616904,"about_ca_system_score_gemma":0.00008593999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001288895,"about_ca_topic_score_gemma":6.804851e-7,"domain_scores_codex":[0.9989016,0.0001158775,0.0003236346,0.0001848609,0.0002377513,0.0002362446],"domain_scores_gemma":[0.9988698,0.00004958172,0.0003717328,0.0003038554,0.0003249166,0.00008013344],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001161474,0.00008098005,0.00306553,0.00002000955,0.00008351832,7.745384e-7,0.00002187049,0.000001518562,0.9845686,4.081835e-7,0.01158558,0.0004550924],"study_design_scores_gemma":[0.0003551095,0.0002370155,0.0246948,0.00003100875,0.00001258768,0.00004162464,0.00006671554,0.0000152435,0.9700983,0.00003870431,0.004312805,0.00009610984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996829,0.0006946764,0.00002832012,0.001828136,0.00008212618,0.0001321323,0.00002336987,0.00000333925,0.0003788563],"genre_scores_gemma":[0.9985377,0.0005200277,0.00003279242,0.0002471129,0.0002570052,0.000004627276,0.000009955776,0.000008265819,0.0003825109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02162927,"threshold_uncertainty_score":0.3109143,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2345062431","doi":"10.1016/j.chom.2016.04.004","title":"A Burkholderia Type VI Effector Deamidates Rho GTPases to Activate the Pyrin Inflammasome and Trigger Inflammation","year":2016,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":174,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"National Key Research and Development Program of China; Cystic Fibrosis Canada; Chinese Academy of Sciences; Cystic Fibrosis Trust; National Science Foundation","keywords":"Burkholderia cenocepacia; Pyrin domain; Inflammasome; Biology; RHOA; GTPase; Pyroptosis; Microbiology; Effector; Cell biology; Inflammation; Immunology; Burkholderia; Signal transduction; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.007231850218221132,"gpt":0.2388220438169515,"spread":0.2315901935987304,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001807894,0.0001867638,0.0001510868,0.00004692254,0.0001325285,0.0000619276,0.0001972755,0.00008969125,0.00004360863],"category_scores_gemma":[0.0002498874,0.0001075924,0.00004485106,0.0001021005,0.0001293421,0.00001131569,0.0004043686,0.00005894441,0.0001314722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002393098,"about_ca_system_score_gemma":0.00004515892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001988432,"about_ca_topic_score_gemma":0.00003194058,"domain_scores_codex":[0.9990138,0.0000911048,0.0001577934,0.00032926,0.00008845623,0.0003195355],"domain_scores_gemma":[0.9993148,0.00007112895,0.0000608499,0.0003513364,0.0001100871,0.0000917632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002148431,0.00001416868,0.001331355,0.00003308668,0.00004259111,0.000002334783,0.00008274351,7.263731e-7,0.9932653,0.000003845815,0.00267328,0.002335729],"study_design_scores_gemma":[0.0005390892,0.0002239038,0.01424348,0.00003367684,0.00001117625,0.000003617152,0.00002087534,7.081788e-7,0.8563482,0.000005943352,0.1284188,0.0001505389],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971746,0.0006103771,0.00004524562,0.001393783,0.0001044084,0.0004529405,0.00003230949,0.00001788601,0.0001684048],"genre_scores_gemma":[0.9969112,0.000749088,0.00007233729,0.0001158051,0.0002733243,0.00005418066,0.00002960561,0.00002793449,0.001766516],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1369171,"threshold_uncertainty_score":0.4387491,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1549061267","doi":"10.1073/pnas.1505317112","title":"Identification of divergent type VI secretion effectors using a conserved chaperone domain","year":2015,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":174,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Canada Research Chairs; Canada Foundation for Innovation","keywords":"Effector; Type VI secretion system; Chaperone (clinical); Secretion; Biology; Computational biology; Cell biology; Genetics; Biochemistry; Virulence; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.0704807296939244,"gpt":0.3440876735044192,"spread":0.2736069438104948,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001208724,0.00005197472,0.00008611486,0.00005920041,0.00007189886,0.000007929514,0.000296444,0.00004980648,0.000002275279],"category_scores_gemma":[0.0008428406,0.0000364166,0.00003567637,0.0002909008,0.0005640198,0.00001837959,0.0001848974,0.00003684648,3.473931e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002049223,"about_ca_system_score_gemma":0.0000498637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007222605,"about_ca_topic_score_gemma":9.608058e-8,"domain_scores_codex":[0.9989814,0.00001288248,0.0002053327,0.0001411771,0.0005754629,0.00008376167],"domain_scores_gemma":[0.99913,0.00001419985,0.0002996305,0.000008329285,0.0005222163,0.00002567948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004617359,0.00002027961,0.008458481,0.00003751209,0.00001703945,9.22931e-10,0.0000795325,0.00003906732,0.9903886,0.0007236895,0.0001728917,0.00001672223],"study_design_scores_gemma":[0.0001828447,0.00009840445,0.04072973,0.00003244467,0.000005795801,0.000001434191,0.0001466976,0.0003666142,0.9563696,0.001949413,0.00007820704,0.00003884505],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991177,0.0001148008,0.000004852048,0.0003317714,0.00002177434,0.0002282311,0.000009071964,0.000001716904,0.0001700344],"genre_scores_gemma":[0.9994686,0.00002366312,0.0004071242,0.0000185224,0.00004161296,0.000008402815,5.252917e-7,0.000002190163,0.00002941052],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03401904,"threshold_uncertainty_score":0.2078154,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1584174944","doi":"10.1111/j.1365-2958.2007.05613.x","title":"Chromosomal toxin–antitoxin loci can diminish large‐scale genome reductions in the absence of selection","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":173,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research; Sunnybrook Research Institute","keywords":"Biology; Genome; Genetics; Gene; Antitoxin; Negative selection; RecBCD; Genome instability; Bacterial genome size; Plasmid; Escherichia coli; DNA; Toxin","retraction":null,"screen_n_in":null,"score":{"opus":0.006537306918707828,"gpt":0.2554463124603825,"spread":0.2489090055416747,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005417946,0.0001630815,0.0001994938,0.0001036087,0.0001036026,0.00001087642,0.0003285645,0.000198543,0.0000277892],"category_scores_gemma":[0.00009300761,0.0001383864,0.00009920535,0.0002928806,0.0002799196,0.00000316237,0.0001754484,0.0001849051,0.00000594055],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003645715,"about_ca_system_score_gemma":0.00007685672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006497902,"about_ca_topic_score_gemma":0.001086403,"domain_scores_codex":[0.9985369,0.000189285,0.0003001042,0.0003817528,0.00007069384,0.000521199],"domain_scores_gemma":[0.9994123,0.00001810272,0.00009252824,0.0003291296,0.0001069464,0.00004101069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005719591,0.000121812,0.002138244,0.00001389664,0.00005157053,0.00001719369,0.0003466965,0.0000175564,0.9967659,0.00005926748,0.000332991,0.00007769034],"study_design_scores_gemma":[0.0004592146,0.0003658438,0.01662119,0.000006780621,0.00001001186,0.0001904093,0.0005566881,0.000002808918,0.9554086,0.00002038168,0.02619142,0.0001666953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957192,0.0005479092,0.002516346,0.000331338,0.0001055489,0.0002870197,0.00008165579,0.000008563231,0.0004024206],"genre_scores_gemma":[0.9984415,0.00009913101,0.0006480945,0.0002608849,0.0001184916,0.00002231947,0.0002803179,0.00001760718,0.0001116911],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04135732,"threshold_uncertainty_score":0.5643235,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1987136798","doi":"10.1073/pnas.1425007112","title":"Generation of reactive oxygen species by lethal attacks from competing microbes","year":2015,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Reactive oxygen species; Oxygen; Biology; Chemistry; Microbiology; Cell biology","retraction":null,"screen_n_in":null,"score":{"opus":0.107450761175458,"gpt":0.3399152937101793,"spread":0.2324645325347213,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006405859,0.0000643272,0.0001093209,0.00004085366,0.00008166541,0.00001354931,0.0003993726,0.00005793094,0.000002634599],"category_scores_gemma":[0.0007323006,0.00004539985,0.00004140894,0.0001541022,0.0006916649,0.00002457378,0.0002381366,0.00005921136,2.902264e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000163466,"about_ca_system_score_gemma":0.0000393653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002393499,"about_ca_topic_score_gemma":3.17921e-7,"domain_scores_codex":[0.9989761,0.000008436951,0.0001911157,0.0001765107,0.0005527313,0.00009511299],"domain_scores_gemma":[0.9992322,0.00002531231,0.000278909,0.000007859203,0.0004349061,0.00002075521],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001876409,0.000020368,0.004391007,0.000008616202,0.00002354249,1.154555e-9,0.0001333922,0.00001504106,0.9899356,0.000509861,0.004903282,0.0000404731],"study_design_scores_gemma":[0.0001380906,0.00005529325,0.01628222,0.00001778928,0.000004688248,8.814458e-7,0.0004372758,0.0001071836,0.9808489,0.000869603,0.001191308,0.00004676983],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955068,0.0002741169,0.000002392213,0.001220724,0.00001515417,0.00008313468,0.00007288743,0.000001700494,0.002823125],"genre_scores_gemma":[0.9983265,0.00003707519,0.001274214,0.00005976197,0.0001959537,0.000003739197,0.000004206423,0.000002662422,0.00009582491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01189121,"threshold_uncertainty_score":0.2548468,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2969979807","doi":"10.3389/fcimb.2019.00313","title":"Maintaining Integrity Under Stress: Envelope Stress Response Regulation of Pathogenesis in Gram-Negative Bacteria","year":2019,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":168,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research","keywords":"Envelope (radar); Biology; Virulence; Cell envelope; Fight-or-flight response; Intracellular; Function (biology); Gram-negative bacteria; Host response; Extracellular; Microbiology; Cell biology; Immunology; Genetics; Immune system; Escherichia coli; Computer science","retraction":null,"screen_n_in":null,"score":{"opus":0.0249647836609014,"gpt":0.2932447715580552,"spread":0.2682799878971538,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008395449,0.0004005807,0.001237372,0.0005495928,0.00005146339,0.00002076066,0.0001683799,0.0008491132,0.00002051514],"category_scores_gemma":[0.0003049995,0.0003669908,0.0002020953,0.0002874046,0.0003004323,0.00001216741,0.0003065557,0.0004398544,0.000002906138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001847039,"about_ca_system_score_gemma":0.0002773685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001262803,"about_ca_topic_score_gemma":0.0001694442,"domain_scores_codex":[0.9964823,0.001707246,0.0006964266,0.0006823567,0.00005315534,0.0003785358],"domain_scores_gemma":[0.999018,0.0001040409,0.000384748,0.0003496578,0.00009757012,0.00004605851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001950909,0.0004430443,0.04457963,0.01051876,0.001082593,0.00001810831,0.0003897422,0.000086164,0.771974,0.00004799036,0.0008701655,0.1680389],"study_design_scores_gemma":[0.004495704,0.002053741,0.04112898,0.01156516,0.0005461739,0.00009810097,0.001001687,0.00003985621,0.09373463,0.0002484853,0.8427309,0.002356556],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.192723,0.8024305,0.00215624,0.0000182491,0.0009499252,0.001075647,0.0005968256,0.000009923277,0.0000396832],"genre_scores_gemma":[0.02451121,0.9724728,0.0009603862,0.00001039394,0.0000874541,0.00007512558,0.001670525,0.00004282571,0.0001692944],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8418608,"threshold_uncertainty_score":0.9998782,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2148306004","doi":"10.1111/j.1462-2920.2008.01576.x","title":"A system for the construction of targeted unmarked gene deletions in the genus <i>Burkholderia</i>","year":2008,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":168,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"","keywords":"Biology; Burkholderia; Burkholderia cepacia complex; Burkholderia cenocepacia; Microbiology; Burkholderia pseudomallei; Genetics; Genome; Gene; Computational biology; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.008603234695876727,"gpt":0.2059024559150985,"spread":0.1972992212192217,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001764873,0.0001044021,0.0001290366,0.00002242351,0.0001713692,0.000002878886,0.0002098842,0.00008892008,0.00001202157],"category_scores_gemma":[0.00002433171,0.00006573989,0.00007840226,0.00004267681,0.0006107361,0.000001924309,0.0001024527,0.00006499531,0.000004657814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003207297,"about_ca_system_score_gemma":0.00001952991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001677293,"about_ca_topic_score_gemma":0.00001402025,"domain_scores_codex":[0.9992167,0.0001529854,0.000190891,0.000200403,0.00003411107,0.0002049636],"domain_scores_gemma":[0.9996009,0.00005675959,0.00007297806,0.0002479227,0.000007210315,0.00001418555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001003742,0.00004055021,0.002101836,0.000008733117,0.00006353849,0.000001892862,0.0001002381,0.0000165754,0.9966744,0.00001452865,0.0006835767,0.0001938199],"study_design_scores_gemma":[0.001139509,0.0003206585,0.01981849,0.000005718081,0.00002483441,0.0006536621,0.001132946,0.00001482536,0.923535,0.000004011765,0.05321684,0.0001334526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966807,0.001461305,0.0006113928,0.0002291781,0.0001298646,0.0005366526,0.0003131632,0.000003380058,0.00003436239],"genre_scores_gemma":[0.9979842,0.0006674934,0.0006474939,0.00009192408,0.00007857936,0.0001490546,0.0003266715,0.000009608419,0.00004499023],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07313929,"threshold_uncertainty_score":0.2680795,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2984168062","doi":"10.1038/s41586-019-1735-9","title":"An interbacterial toxin inhibits target cell growth by synthesizing (p)ppApp","year":2019,"lang":"en","type":"article","venue":"Nature","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":166,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary; Structural Genomics Consortium; Ontario Genomics; University of Toronto; McMaster University","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Bacteria; Biology; Effector; Cell envelope; Nucleotide; Metabolite; Pseudomonas aeruginosa; Cell biology; Microbiology; Biochemistry; Secretion; Adenosine; Escherichia coli; Genetics; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.00264555392149158,"gpt":0.2353851030881184,"spread":0.2327395491666268,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001547511,0.0001862989,0.0001718724,0.00003376293,0.0000583262,0.00005865219,0.0003179115,0.0008441267,0.0001155849],"category_scores_gemma":[0.0001080533,0.0001637736,0.00007007019,0.00006916232,0.00004190912,0.00001230389,0.0002042177,0.000653088,0.00005935106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002109188,"about_ca_system_score_gemma":0.00004590849,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007467591,"about_ca_topic_score_gemma":0.00000629979,"domain_scores_codex":[0.9988239,0.00008606762,0.0001339994,0.0004373126,0.0001785204,0.0003401531],"domain_scores_gemma":[0.999382,0.00001300014,0.00005390796,0.0003474403,0.0001039846,0.00009966025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000149801,0.00006257852,0.001773965,0.00003794821,0.00002904469,0.000001864517,0.0000433292,5.305285e-7,0.9746988,0.00001482924,0.02304248,0.0001448693],"study_design_scores_gemma":[0.0004369877,0.0003110532,0.0009787952,0.00001592744,0.00000466956,0.000002730059,0.00005007267,0.000007956659,0.9238648,0.00002331012,0.07410613,0.000197565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956713,0.001100732,0.00003213251,0.0002882058,0.000408866,0.0002202352,0.0001404003,0.00002521049,0.002112897],"genre_scores_gemma":[0.9972375,0.0001112284,0.0004646505,0.0005376046,0.0004442831,0.00001341941,0.0003309135,0.00003372174,0.0008266538],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05106365,"threshold_uncertainty_score":0.6678492,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1986886213","doi":"10.1371/journal.pntd.0001289","title":"Efficacy of a Low-Cost, Inactivated Whole-Cell Oral Cholera Vaccine: Results from 3 Years of Follow-Up of a Randomized, Controlled Trial","year":2011,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":165,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Western University","funders":"Styrelsen för Internationellt Utvecklingssamarbete; Bill and Melinda Gates Foundation","keywords":"Medicine; Cholera vaccine; Cholera; Randomized controlled trial; Placebo; Clinical endpoint; Vaccination; Regimen; Vaccine efficacy; Diarrhea; Clinical trial; Vibrio cholerae; Pediatrics; Immunology; Internal medicine; Virology; Alternative medicine","retraction":null,"screen_n_in":null,"score":{"opus":0.01831809692622912,"gpt":0.2526333354283805,"spread":0.2343152385021514,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00002774264,0.0002614156,0.001793086,0.0001229438,0.00003014257,0.000009953651,0.0003349896,0.0001689739,0.00007953919],"category_scores_gemma":[0.008389298,0.000208017,0.0007484747,0.0002377215,0.0002648649,0.000009675693,0.0001942248,0.0001312086,0.000003792876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001670059,"about_ca_system_score_gemma":0.0001988924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001841641,"about_ca_topic_score_gemma":0.00001392525,"domain_scores_codex":[0.9971094,0.0006157258,0.001109164,0.0004471378,0.0003937958,0.0003247391],"domain_scores_gemma":[0.9976751,0.0006008301,0.0005804739,0.0005302628,0.000434051,0.0001792615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","study_design_scores_codex":[0.541195,0.001521292,0.0001718199,0.00003548713,0.0009255285,0.000003761211,0.00009427779,0.000001187461,0.4557709,0.000002834172,0.0001634635,0.0001144471],"study_design_scores_gemma":[0.6963184,0.0007960202,0.08028961,0.0000919345,0.0005043547,1.230453e-7,0.00001798066,0.00003373168,0.2217498,0.00002286657,0.0000321286,0.0001430563],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954732,0.0005390858,0.00004728276,0.00003438188,0.0001092684,0.002793829,0.0008472998,0.00002026109,0.0001353925],"genre_scores_gemma":[0.9986412,0.0002100638,0.0001826497,0.00001868451,0.0001219949,0.0002617362,0.0004501455,0.00003016689,0.00008334072],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2340211,"threshold_uncertainty_score":0.9999635,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2078604791","doi":"10.1016/j.chom.2010.05.011","title":"The Phosphoinositide Phosphatase SopB Manipulates Membrane Surface Charge and Trafficking of the Salmonella-Containing Vacuole","year":2010,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":162,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Vacuole; Biology; Salmonella; Cell biology; Phosphatase; Membrane; Acid phosphatase; Enzyme; Biochemistry; Phosphorylation; Bacteria; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.005554626919928268,"gpt":0.2210307175800362,"spread":0.2154760906601079,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003347815,0.0001961558,0.0001793924,0.00001133474,0.0004070591,0.00006552196,0.0003938451,0.0001076961,0.00002141963],"category_scores_gemma":[0.00008153897,0.0001264581,0.00009636091,0.00007705234,0.0003283492,0.000006000863,0.0004675451,0.0002322357,0.000007461133],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008184702,"about_ca_system_score_gemma":0.00005866006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001148626,"about_ca_topic_score_gemma":0.0001601384,"domain_scores_codex":[0.9988847,0.00005747311,0.0002235461,0.0003193121,0.0001181617,0.0003968532],"domain_scores_gemma":[0.9991507,0.0000663269,0.00012829,0.0004953857,0.00009015934,0.00006911818],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008662765,0.00003149659,0.003358855,0.00003788713,0.00005627167,0.000002569204,0.0001820667,0.000005462609,0.9949602,0.00003422242,0.0009585543,0.0002857384],"study_design_scores_gemma":[0.0004883349,0.00007569331,0.004140753,0.00001982388,0.00002210538,0.00001274976,0.0002059586,0.00003635275,0.9758805,0.00000409414,0.0189638,0.0001498079],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902827,0.008435453,0.000005567902,0.0002895039,0.0002524709,0.0002826436,0.00005736619,0.000009938961,0.0003843915],"genre_scores_gemma":[0.9975785,0.001323303,0.0001267852,0.00009841418,0.00008007302,0.000007069423,0.00003295618,0.00002977922,0.000723123],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01907972,"threshold_uncertainty_score":0.515681,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2167954590","doi":"10.1371/journal.ppat.1003752","title":"Dual Expression Profile of Type VI Secretion System Immunity Genes Protects Pandemic Vibrio cholerae","year":2013,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":162,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Research Institute for Microbial Diseases, Osaka University; National Institutes of Health; Alberta Innovates; Fondation pour la Recherche Médicale; University of Alberta; Canadian Institutes of Health Research; University of Rochester; University of Pennsylvania","keywords":"Type VI secretion system; Vibrio cholerae; Biology; Microbiology; Effector; Virulence; Immunity; Gene; Genetics; Bacteria; Cell biology; Immune system","retraction":null,"screen_n_in":null,"score":{"opus":0.02258432033453134,"gpt":0.2520921336975682,"spread":0.2295078133630369,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001644045,0.0001703343,0.0002212703,0.00004846412,0.0001228542,0.00002314634,0.0001608471,0.0001647385,0.0000624367],"category_scores_gemma":[0.0001704957,0.0001417341,0.00007107556,0.0001060704,0.00008301824,0.000009988033,0.0003038465,0.0001173599,0.00006583994],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003199024,"about_ca_system_score_gemma":0.00008096884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004386016,"about_ca_topic_score_gemma":0.000004167014,"domain_scores_codex":[0.998742,0.0001970426,0.0002451411,0.0002955627,0.0002247928,0.000295406],"domain_scores_gemma":[0.9989609,0.0000119619,0.0001299928,0.0004442206,0.0003677729,0.00008521983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006943921,0.00006786266,0.004204483,0.0002376677,0.00006050587,0.000001909882,0.00009096433,0.00000419183,0.9942175,0.000002395205,0.0002056694,0.0008374067],"study_design_scores_gemma":[0.0003394875,0.0004195966,0.01819013,0.0001292587,0.00001528949,0.0000101197,0.0002169048,0.000272786,0.9798968,0.000004234472,0.0003384268,0.0001669834],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977643,0.0005428967,0.0001038882,0.00001803371,0.00008395492,0.0009360099,0.00007184449,0.00004065789,0.0004383475],"genre_scores_gemma":[0.9981719,0.0001961122,0.0007042845,0.00001011487,0.0001925622,0.0002765657,0.0001937489,0.00002823145,0.0002264798],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01432072,"threshold_uncertainty_score":0.5779749,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2010486430","doi":"10.1016/j.epidem.2013.09.004","title":"Examining rainfall and cholera dynamics in Haiti using statistical and dynamic modeling approaches","year":2013,"lang":"en","type":"article","venue":"Epidemics","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":158,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Ontario; University of Toronto","funders":"Goddard Space Flight Center; National Science Foundation","keywords":"Cholera; Sanitation; Geography; Distributed lag; Incidence (geometry); Climatology; Environmental science; Statistics; Mathematics; Biology","retraction":null,"screen_n_in":null,"score":{"opus":0.08616396658509023,"gpt":0.3011949977610767,"spread":0.2150310311759864,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003621761,0.0001474467,0.0002053553,0.00005495827,0.00007149165,0.00005131143,0.00007503015,0.0001201319,0.000002934607],"category_scores_gemma":[0.0006065305,0.0001451322,0.00001351327,0.00004825681,0.0001459295,0.00001260799,0.0002877901,0.0001604326,8.664534e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005850715,"about_ca_system_score_gemma":0.0000320129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002191288,"about_ca_topic_score_gemma":0.0001544152,"domain_scores_codex":[0.9989275,0.00008205035,0.00023428,0.0003561846,0.00007454053,0.0003254746],"domain_scores_gemma":[0.9995943,0.00008290644,0.00003977839,0.0001538281,0.00003418829,0.00009496137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002425123,0.0002220923,0.4820074,0.0007739537,0.0004385009,0.00004220129,0.002246981,0.03035066,0.3906624,0.003635546,0.0003481938,0.08902948],"study_design_scores_gemma":[0.0003358558,0.00005088704,0.01135289,0.00002520267,0.000006422107,0.00001516631,0.0005700715,0.98691,0.00007361817,0.0004617267,0.00003283938,0.0001653569],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9507978,0.0006759552,0.0478874,0.0002233595,0.00002464314,0.0001928316,0.00002234008,0.000007315145,0.0001683612],"genre_scores_gemma":[0.9788345,0.0004704739,0.02038594,0.0001124332,0.00003906043,0.00002055277,0.00007631907,0.00002222297,0.00003848787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9565593,"threshold_uncertainty_score":0.591832,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2157428620","doi":"10.1038/msb.2010.80","title":"Molecular characterization of the evolution of phagosomes","year":2010,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; Institute for Research in Immunology and Cancer; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Phagosome; Biology; Proteome; Organelle; Acquired immune system; Innate immune system; Phagocytosis; Cell biology; Immune system; Multicellular organism; Computational biology; Gene; Immunology; Bioinformatics; Genetics","retraction":null,"screen_n_in":null,"score":{"opus":0.004509911470633369,"gpt":0.2398788975702869,"spread":0.2353689860996535,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002381932,0.000144722,0.0002483535,0.00006767638,0.00004491761,0.00000696116,0.0003680627,0.0002264641,0.000004822748],"category_scores_gemma":[0.0002311505,0.0001066002,0.0001394521,0.0001702252,0.0003193135,0.000003211376,0.0002577256,0.0001153406,0.000002117542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001540545,"about_ca_system_score_gemma":0.0001158646,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001082388,"about_ca_topic_score_gemma":0.00001619599,"domain_scores_codex":[0.9987805,0.0002459332,0.0003384047,0.0002735972,0.0001370019,0.0002245419],"domain_scores_gemma":[0.9988199,0.000008040594,0.0002650139,0.0006135243,0.0002549034,0.0000386462],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002593288,0.00003481924,0.009085593,0.00005719148,0.00009831685,9.297185e-7,0.0000164079,0.000008640872,0.9859571,0.004529511,0.00001256206,0.0001730144],"study_design_scores_gemma":[0.0002827948,0.000152449,0.01639236,0.00001683647,0.0000171738,0.00001261511,0.00002397302,0.00005563029,0.9805195,0.00005307825,0.002369959,0.0001036396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914384,0.0005418188,0.006461442,0.0001104413,0.0006548532,0.0003874904,0.00006962618,0.000007321223,0.0003286434],"genre_scores_gemma":[0.9996063,0.00002262517,0.00005731319,0.0000218963,0.00007792688,0.00004263562,0.00008005683,0.00001842332,0.00007288428],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008167874,"threshold_uncertainty_score":0.4347028,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2114303542","doi":"10.3201/eid1711.110794","title":"Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa","year":2011,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Vibrio cholerae; Outbreak; Pulsed-field gel electrophoresis; El Tor; Biology; Cholera; Genome; Molecular epidemiology; Pandemic; Genetics; Virology; Genotype; Gene; Coronavirus disease 2019 (COVID-19); Disease; Medicine; Bacteria; Infectious disease (medical specialty)","retraction":null,"screen_n_in":null,"score":{"opus":0.02490298389566572,"gpt":0.2628487495420687,"spread":0.237945765646403,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003626348,0.0001361434,0.0002055626,0.00004666473,0.00009742314,0.00001552315,0.00009057806,0.00004409704,0.0000634003],"category_scores_gemma":[0.00006545223,0.000133432,0.0000664823,0.00006031705,0.0001845987,0.000007043228,0.0001908266,0.00004914797,0.000005608732],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001353797,"about_ca_system_score_gemma":0.00004822198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001888197,"about_ca_topic_score_gemma":0.00007129234,"domain_scores_codex":[0.9992586,0.00005505815,0.0001514812,0.0002597946,0.00008337947,0.0001916763],"domain_scores_gemma":[0.9995206,0.00001773686,0.00007690056,0.0002048761,0.00008091248,0.00009894786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00034105,0.0005196322,0.1838953,0.00006913197,0.001042313,0.000009412612,0.004005928,0.00005059042,0.8037232,0.0001077674,0.004615792,0.001619932],"study_design_scores_gemma":[0.001539211,0.0007557565,0.7559643,0.0000452345,0.0001545123,0.000005959896,0.0008824838,0.00008437991,0.2233181,0.001001597,0.0157268,0.0005216821],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906984,0.002733359,0.0002363118,0.00001584826,0.00008571547,0.0001336597,0.0001614276,0.00002197246,0.005913311],"genre_scores_gemma":[0.9990246,0.0004480871,0.0001656,0.00002208895,0.0001153349,0.00002564555,0.00005933222,0.00001413725,0.0001251175],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5804051,"threshold_uncertainty_score":0.5441198,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2324339247","doi":"10.1056/nejmoa1308663","title":"Second-Pandemic Strain of<i>Vibrio cholerae</i>from the Philadelphia Cholera Outbreak of 1849","year":2014,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":155,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Public Health Ontario; McMaster University","funders":"Medical Research Council; Social Sciences and Humanities Research Council of Canada; National Health and Medical Research Council; McMaster University; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Massachusetts Medical Society","keywords":"Vibrio cholerae; Cholera; Outbreak; El Tor; Pandemic; Prophage; Genome; Cholera toxin; Strain (injury); Virology; Biology; Genetics; Microbiology; Medicine; Coronavirus disease 2019 (COVID-19); Gene; Infectious disease (medical specialty); Bacteriophage; Bacteria","retraction":null,"screen_n_in":null,"score":{"opus":0.01903076213970594,"gpt":0.278878799803411,"spread":0.2598480376637051,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001167736,0.0001531087,0.0004626956,0.00005661438,0.00003838204,0.000006636782,0.0003928162,0.00008518138,0.0001528549],"category_scores_gemma":[0.000790657,0.00008667977,0.0001113348,0.00008474284,0.000296697,0.000007491214,0.000094361,0.0002715321,9.183923e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009995256,"about_ca_system_score_gemma":0.0001390608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007286933,"about_ca_topic_score_gemma":0.00009198434,"domain_scores_codex":[0.9984974,0.0001764282,0.0005954494,0.0001455567,0.0003874323,0.0001977095],"domain_scores_gemma":[0.9986498,0.0001643807,0.0004817644,0.0003013571,0.0002556806,0.0001470644],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004225763,0.00002833914,0.005649492,0.00002386511,0.0002585291,0.000003152531,0.001053568,0.00001826171,0.9590645,0.00001995935,0.007289161,0.02616854],"study_design_scores_gemma":[0.05154029,0.004972572,0.2538909,0.0006782704,0.0002618438,0.0003511519,0.0005500968,0.00004154133,0.1053457,0.0008704801,0.5811769,0.0003202979],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9866935,0.003007021,0.0006546641,0.008503157,0.0003274282,0.00009482988,0.00004992632,0.000002514663,0.0006669741],"genre_scores_gemma":[0.9936872,0.0009303401,0.0001950969,0.0005437859,0.004334731,8.341348e-7,0.00002623294,0.00001470451,0.0002670846],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8537189,"threshold_uncertainty_score":0.3534698,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2289083251","doi":"10.1098/rstb.2015.0364","title":"Managing marine disease emergencies in an era of rapid change","year":2016,"lang":"en","type":"review","venue":"Philosophical Transactions of the Royal Society B Biological Sciences","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":155,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Prince Edward Island","funders":"Climate Program Office; Division of Ocean Sciences; Canada Excellence Research Chairs, Government of Canada","keywords":"Disease; Environmental planning; Disease surveillance; Environmental resource management; Business; Risk analysis (engineering); Adaptive management; Climate change; Psychological resilience; Environmental change; Resilience (materials science); Disease management; Geography; Ecology; Biology; Medicine; Environmental science","retraction":null,"screen_n_in":null,"score":{"opus":0.1331230277972967,"gpt":0.3602740497852315,"spread":0.2271510219879348,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005890868,0.0002801066,0.0006999944,0.00003208224,0.0002257126,0.00001252561,0.001055548,0.0002639932,0.0001491844],"category_scores_gemma":[0.0001164787,0.0001341187,0.0009875231,0.0004133652,0.002043191,0.00001048403,0.0002845073,0.0003101972,0.000001652471],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002827624,"about_ca_system_score_gemma":0.0001154682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004105812,"about_ca_topic_score_gemma":0.000009181964,"domain_scores_codex":[0.9979155,0.0003679309,0.000490647,0.0005561427,0.0003016733,0.0003681163],"domain_scores_gemma":[0.9991524,0.0000920146,0.0002102752,0.000354793,0.0000637531,0.0001268108],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007083281,0.0005306787,0.001216134,0.002288237,0.0002667314,0.000001247166,0.00005159125,0.00002188957,0.0004758678,0.0002760116,0.00002866902,0.9947721],"study_design_scores_gemma":[0.004922555,0.01994014,0.06186731,0.04046043,0.002875702,0.00002719171,0.0007955212,0.001969356,0.002815724,0.09968439,0.755348,0.00929368],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004050699,0.9901268,0.0002313335,0.00406149,0.0002131666,0.0008312819,0.0003183721,0.00001382771,0.0001529966],"genre_scores_gemma":[0.07958786,0.9197822,0.0001847536,0.0000417406,0.0002168647,0.0001341658,0.00001848025,0.000009458604,0.00002454091],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9854784,"threshold_uncertainty_score":0.7528221,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3005809379","doi":"10.1016/j.tim.2020.01.003","title":"Contact-Dependent Interbacterial Antagonism Mediated by Protein Secretion Machines","year":2020,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":154,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Antagonism; Biology; Cell envelope; Effector; Secretion; Bacteria; Bacteriocin; Microbiology; Competition (biology); Bacterial protein; Cell biology; Biochemistry; Genetics; Escherichia coli; Ecology; Receptor; Gene","retraction":null,"screen_n_in":null,"score":{"opus":0.02041212960314923,"gpt":0.320021640368541,"spread":0.2996095107653918,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002446062,0.0006652646,0.001668124,0.0002466424,0.00005662739,0.00004030692,0.0006204881,0.0009087418,0.000227377],"category_scores_gemma":[0.0001589927,0.0005480563,0.0003443809,0.0002349506,0.0001785625,0.000004604133,0.0007401399,0.0005695865,0.00008977027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001316914,"about_ca_system_score_gemma":0.0001669382,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005197501,"about_ca_topic_score_gemma":0.0001457802,"domain_scores_codex":[0.9967547,0.0007792899,0.0007799541,0.001002748,0.00006923566,0.0006140546],"domain_scores_gemma":[0.9990306,0.0000344769,0.0003521181,0.000424497,0.00004547781,0.0001128027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001355067,0.00005773201,0.000006478625,0.000732805,0.0002865184,0.00003121254,0.00002065397,1.292845e-8,0.7558265,0.000003422363,0.004605385,0.2382938],"study_design_scores_gemma":[0.000815396,0.0005577067,0.000004806102,0.0005277001,0.00007566498,0.00009176332,0.000005459784,5.618789e-7,0.007208074,0.000001990517,0.99022,0.0004908553],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003254274,0.9915296,0.00001433148,0.0001685935,0.0005590926,0.0007115064,0.003520702,0.00003634075,0.0002055339],"genre_scores_gemma":[0.00107854,0.9618631,0.00005438016,0.00006316526,0.0005020147,0.000318046,0.03514989,0.00008684726,0.0008839969],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9856147,"threshold_uncertainty_score":0.9996971,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1974774624","doi":"10.1128/mbio.00334-10","title":"Evidence of a Dominant Lineage of Vibrio cholerae-Specific Lytic Bacteriophages Shed by Cholera Patients over a 10-Year Period in Dhaka, Bangladesh","year":2011,"lang":"en","type":"article","venue":"mBio","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":153,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Université Laval; University of Guelph; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Howard Hughes Medical Institute","keywords":"Vibrio cholerae; Cholera; Lytic cycle; Myoviridae; Bacteriophage; Biology; Virology; Microbiology; Pandemic; Lineage (genetic); Genome; Virus; Gene; Bacteria; Genetics; Medicine; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Disease","retraction":null,"screen_n_in":null,"score":{"opus":0.02635098954280581,"gpt":0.2594395622942043,"spread":0.2330885727513985,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002363205,0.0002203725,0.000382507,0.00009446221,0.00003551958,0.00001907097,0.0003504021,0.0001471326,0.0005527347],"category_scores_gemma":[0.0001990324,0.0001999626,0.0001247554,0.0001709591,0.0002459142,0.00001979172,0.0003267971,0.0001126242,0.00001770695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003122607,"about_ca_system_score_gemma":0.00005954663,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000956269,"about_ca_topic_score_gemma":0.00002830878,"domain_scores_codex":[0.9983795,0.00009135169,0.0004717204,0.0004411822,0.0002531617,0.0003630439],"domain_scores_gemma":[0.9990122,0.00001854806,0.0001889967,0.000516245,0.0001807048,0.00008327945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008104399,0.0003380874,0.03461409,0.000114063,0.00005041237,0.000005071958,0.0009984066,2.413438e-7,0.9609793,0.00000227518,0.001568952,0.0005185992],"study_design_scores_gemma":[0.001630952,0.000792227,0.3492569,0.0002060837,0.000009164473,9.989808e-7,0.00007360896,0.000005490966,0.6452513,0.000001320455,0.002589701,0.0001822409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972479,0.001798472,0.00001795478,0.00002937266,0.00007751797,0.000342356,0.0001000313,0.000005084119,0.000381306],"genre_scores_gemma":[0.9979547,0.0009059329,0.0002621443,0.00002872411,0.00005042035,0.00003837187,0.00006325782,0.00002731084,0.0006691996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.315728,"threshold_uncertainty_score":0.8154237,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2135092459","doi":"10.7554/elife.03497","title":"Evolutionary consequences of intra-patient phage predation on microbial populations","year":2014,"lang":"en","type":"article","venue":"eLife","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Howard Hughes Medical Institute; Canada Research Chairs; Massachusetts General Hospital; Charles A. King Trust","keywords":"Vibrio cholerae; Biology; Virulence; Context (archaeology); Microbiology; Pathogen; Cholera; Phage therapy; Gene; Genetics; Bacteria; Bacteriophage; Escherichia coli","retraction":null,"screen_n_in":null,"score":{"opus":0.01821677137454784,"gpt":0.2801192616289762,"spread":0.2619024902544284,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007664957,0.00006072973,0.00007062615,0.0000297861,0.00006147846,0.000005620242,0.00006709591,0.00004206379,0.00002285261],"category_scores_gemma":[0.0002769942,0.00005552679,0.00003234589,0.00003898485,0.0001182436,0.000002684715,0.00005382653,0.00003251822,0.00001210948],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001146665,"about_ca_system_score_gemma":0.0000391221,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002205455,"about_ca_topic_score_gemma":0.00001673683,"domain_scores_codex":[0.9994364,0.00006982825,0.0001324237,0.0001384659,0.0001193597,0.0001035017],"domain_scores_gemma":[0.999662,0.00001056238,0.00005721064,0.0001453261,0.00009594918,0.00002899213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005456625,0.00004613748,0.00201172,0.000008577938,0.00001854483,1.964868e-7,0.00003588296,0.00009362982,0.9892581,0.0004197263,0.007053246,0.0009996552],"study_design_scores_gemma":[0.0002777387,0.0005510247,0.0346624,0.00001819044,0.000006188262,0.000002613032,0.00002811061,0.00006217628,0.9450913,0.000093854,0.01911648,0.00008989737],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978198,0.0001018926,0.0004452413,0.0002890007,0.0001320286,0.0001205,0.00004814015,0.000006665603,0.001036707],"genre_scores_gemma":[0.9982824,0.00003779439,0.001135985,0.0001154824,0.0001319664,0.00001266532,0.0001801613,0.000005265963,0.00009825946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04416678,"threshold_uncertainty_score":0.2264317,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2126534542","doi":"10.15252/embj.201591163","title":"Chimeric adaptor proteins translocate diverse type VI secretion system effectors in Vibrio cholerae","year":2015,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":146,"is_retracted":false,"has_abstract":false,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Studienstiftung des Deutschen Volkes; Deutscher Akademischer Austauschdienst; Canadian Institutes of Health Research; Alberta Innovates; Alberta Innovates - Health Solutions","keywords":"Type VI secretion system; Effector; Vibrio cholerae; Biology; Secretion; Signal transducing adaptor protein; Cell biology; Microbiology; Virulence; Bacteria; Genetics; Gene; Signal transduction; Biochemistry","retraction":null,"screen_n_in":null,"score":{"opus":0.02906291196328213,"gpt":0.2737772533958143,"spread":0.2447143414325321,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007855819,0.0001374331,0.000159492,0.00005564356,0.0001410953,0.00005755396,0.0002567243,0.00005975701,0.00000869331],"category_scores_gemma":[0.0001100755,0.00009024658,0.00006806516,0.000152987,0.00008057455,0.0000094795,0.00009244227,0.0002497585,0.00003036384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008850721,"about_ca_system_score_gemma":0.0001539504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006025273,"about_ca_topic_score_gemma":0.00004497086,"domain_scores_codex":[0.9987882,0.0003226866,0.000188843,0.0001596251,0.0002449715,0.0002957195],"domain_scores_gemma":[0.9994355,0.000009179806,0.00008458034,0.0002013056,0.00012853,0.0001408663],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007687224,0.0000581012,0.002605077,0.00004894671,0.0001800822,0.00004314517,0.0007574016,0.0002741975,0.9920637,0.00001712313,0.001686387,0.001497091],"study_design_scores_gemma":[0.02430205,0.01218731,0.2248056,0.001507805,0.000464509,0.003714192,0.01234809,0.005598688,0.6270522,0.0002618373,0.08488432,0.002873442],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973686,0.000890775,0.0002993182,0.0002789637,0.0003750412,0.0003269604,0.000006255331,0.00001106169,0.0004429673],"genre_scores_gemma":[0.9989901,0.0001410915,0.0000866335,0.00003342511,0.0005556598,0.00001748932,0.00001137022,0.00001808544,0.0001461226],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3650115,"threshold_uncertainty_score":0.3680149,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}