{"meta":{"page":1,"per_page":50,"max_per_page":100,"total":41,"total_is_capped":false,"direct_labels_cover":1,"predictions_cover":41,"direct_label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline (scores rank; they never assert a category)","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12","author_layer_release":"2026-06-26"},"query_hash":"bda146377ed9","filters":{"venue":"Acta Crystallographica Section F Structural Biology Communications"}},"results":[{"id":"W2905879613","doi":"10.1107/s2053230x18015108","title":"Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy","year":2018,"lang":"en","type":"review","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Advanced Electron Microscopy Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; Comunidad de Madrid; Horizon 2020; Instituto de Salud Carlos III; National Institutes of Health; Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España","keywords":"Macromolecule; Electron microscope; Resolution (logic); Single particle analysis; Low resolution; Microscopy; Biophysics; Nanotechnology; Chemistry; Biological system; Materials science; Chemical physics; High resolution; Physics; Computer science; Biology; Optics; Biochemistry; Artificial intelligence; Organic chemistry","authors":[{"name":"Carlos Óscar S. Sorzano","is_ca":false},{"name":"Álvaro Realpe Jiménez","is_ca":false},{"name":"Javier Mota","is_ca":false},{"name":"José Luis Vilas","is_ca":false},{"name":"David Maluenda","is_ca":false},{"name":"Marta Martínez","is_ca":false},{"name":"Erney Ramírez-Aportela","is_ca":false},{"name":"Tomáš Majtner","is_ca":false},{"name":"Joan Segura","is_ca":false},{"name":"Rubén Sánchez-García","is_ca":false},{"name":"Yaiza Rancel","is_ca":false},{"name":"Laura del Caño","is_ca":false},{"name":"Pablo Conesa","is_ca":false},{"name":"Roberto Melero","is_ca":false},{"name":"Slavica Jonić","is_ca":false},{"name":"Javier Vargas","is_ca":true},{"name":"Frédéric Cazals","is_ca":false},{"name":"Zachary Freyberg","is_ca":false},{"name":"James Krieger","is_ca":false},{"name":"İvet Bahar","is_ca":false},{"name":"R. Marabini","is_ca":false},{"name":"J.M. Carazo","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02088481352664075,"gpt":0.3629546208002957,"spread":0.3420698072736549,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005513938,0.0003234959,0.001170172,0.0002383339,0.0002065609,0.00000724973,0.001606776,0.0007087676,0.00001687241],"category_scores_gemma":[0.000238894,0.0002285794,0.0007444558,0.001720313,0.00216234,0.000006692512,0.0005309205,0.000359376,4.489034e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002992202,"about_ca_system_score_gemma":0.0001848632,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002215259,"about_ca_topic_score_gemma":0.0002281135,"domain_scores_codex":[0.9969935,0.001077693,0.001188653,0.0004114422,0.00008661571,0.0002420968],"domain_scores_gemma":[0.9953116,0.000294082,0.001775823,0.001984529,0.0005945016,0.00003949659],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004790138,0.0001450148,0.007992178,0.0003292448,0.002923535,7.219962e-9,0.00001582682,0.000001474256,0.9827885,0.0006741259,0.0004571763,0.004625003],"study_design_scores_gemma":[0.0003471788,0.0009235438,0.0154387,0.0002877222,0.003260803,0.00001921017,0.00002140705,0.00003436124,0.02475826,0.000840558,0.9532658,0.0008023839],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.1426374,0.8422287,0.003340763,0.00006111502,0.0001151362,0.001591512,0.009872808,0.00003535978,0.0001171774],"genre_scores_gemma":[0.5018754,0.4887347,0.0008883579,0.00001071098,0.000009022639,0.00006217286,0.008402228,0.00001140143,0.000006050628],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.9580302,"threshold_uncertainty_score":0.9321196,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2349856532","doi":"10.1107/s2053230x15024747","title":"Crystal structure of microtubule affinity-regulating kinase 4 catalytic domain in complex with a pyrazolopyrimidine inhibitor","year":2016,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Microtubule and mitosis dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Canadian Light Source; Bristol-Myers Squibb","keywords":"Kinase; Microtubule; Serine; Chemistry; Protein kinase domain; Threonine; Transferase; Phosphorylation; Cooperativity; Cell biology; Biochemistry; Biology; Biophysics; Enzyme; Mutant; Gene","authors":[{"name":"John S. Sack","is_ca":false},{"name":"Mian Gao","is_ca":false},{"name":"Susan E. Kiefer","is_ca":false},{"name":"Joseph E. Myers","is_ca":false},{"name":"John A. Newitt","is_ca":false},{"name":"Sophie Wu","is_ca":false},{"name":"Chunhong Yan","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01160151244765386,"gpt":0.2476520332930894,"spread":0.2360505208454355,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001330624,0.0003011902,0.0003407628,0.0003019407,0.0002427408,0.00001664679,0.0007032959,0.0003666396,0.00004330147],"category_scores_gemma":[0.00006558865,0.0002149025,0.0001261128,0.0004428413,0.001028555,0.0000222549,0.0004259601,0.0002540577,1.895996e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004348316,"about_ca_system_score_gemma":0.00008461488,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001556991,"about_ca_topic_score_gemma":0.004432174,"domain_scores_codex":[0.9983032,0.0002418217,0.0005293884,0.0004678725,0.00008939739,0.0003683041],"domain_scores_gemma":[0.9979864,0.00008939821,0.0003373864,0.001313405,0.0001871912,0.00008617533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001896723,0.00004622748,0.03238725,0.00001964674,0.00009994146,4.361439e-7,0.00008571729,0.000009212068,0.9663629,0.0003875325,0.00007594313,0.0003355574],"study_design_scores_gemma":[0.01534145,0.003682156,0.3148232,0.0003980095,0.0002605408,0.0007161667,0.001584889,0.0002280238,0.5828235,0.009456214,0.06784809,0.002837711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975346,0.0002167392,0.0003600547,0.0009038942,0.00007522332,0.0004129667,0.0003512604,0.00003208756,0.0001131714],"genre_scores_gemma":[0.9938116,0.0002233191,0.004587492,0.00008633381,0.00008073992,0.00002653605,0.001136233,0.00003194033,0.00001578315],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3835393,"threshold_uncertainty_score":0.876347,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2740527601","doi":"10.1107/s2053230x17009669","title":"1.12 Å resolution crystal structure of the catalytic domain of the plasmid-mediated colistin resistance determinant MCR-2","year":2017,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; Diamond Light Source","keywords":"Colistin; Plasmid; MCR-1; Transferase; Resolution (logic); Biology; Crystal structure; Microbiology; Chemistry; Genetics; Antibiotics; Escherichia coli; Crystallography; Gene; Biochemistry; Enzyme; Enterobacteriaceae; Computer science","authors":[{"name":"Katie Coates","is_ca":false},{"name":"Timothy R. Walsh","is_ca":true},{"name":"James Spencer","is_ca":false},{"name":"Philip Hinchliffe","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01174803268766134,"gpt":0.2591786727894804,"spread":0.247430640101819,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":["sts"],"category_scores_codex":[0.0001808565,0.0002311113,0.0002798791,0.00006681306,0.001311122,0.00003337124,0.002716709,0.0003980457,0.00001125462],"category_scores_gemma":[0.0004906367,0.0001499189,0.0002459544,0.0001627033,0.003517463,0.00002062759,0.001098226,0.0003498984,7.110343e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003408419,"about_ca_system_score_gemma":0.0001300093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001831121,"about_ca_topic_score_gemma":0.009390721,"domain_scores_codex":[0.9982523,0.0004304905,0.0005534507,0.0003443949,0.0001501064,0.0002692568],"domain_scores_gemma":[0.9944488,0.00009859655,0.001232374,0.003934987,0.0002378885,0.00004735272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001101911,0.00001648297,0.09613597,0.00002600103,0.00008129764,8.245169e-8,0.00007387395,0.000004867888,0.9028333,0.0004647621,0.000228109,0.00002499694],"study_design_scores_gemma":[0.0006504277,0.0001228963,0.9408537,0.00008286766,0.00008101539,0.0000327444,0.0001956627,0.0000445236,0.02949874,0.001998224,0.02617207,0.0002671305],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967433,0.0002501115,0.00004580663,0.0009338584,0.0005387184,0.0005142929,0.0005798333,0.00001258571,0.0003814869],"genre_scores_gemma":[0.9984725,0.0002079559,0.0008155904,0.00004873554,0.00006676388,0.00001238282,0.0002374191,0.00001937809,0.0001193488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8733346,"threshold_uncertainty_score":0.999989,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2109641600","doi":"10.1107/s2053230x15010183","title":"Structure of the human MLH1 N-terminus: implications for predisposition to Lynch syndrome","year":2015,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"Argonne National Laboratory; Myriad Genetics; Biological and Environmental Research; University of Chicago; U.S. Department of Energy","keywords":"MLH1; Lynch syndrome; Genetics; Gene; DNA mismatch repair; Biology; Genome; Computational biology; PMS2; DNA repair","authors":[{"name":"Hong Wu","is_ca":true},{"name":"Hong Zeng","is_ca":true},{"name":"Robert Lam","is_ca":true},{"name":"W. Tempel","is_ca":true},{"name":"Iain Kerr","is_ca":false},{"name":"Jinrong Min","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03971638071660209,"gpt":0.3337498758975491,"spread":0.294033495180947,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001201894,0.0001988515,0.0003089862,0.0002478061,0.0004693066,0.00001666817,0.0008009207,0.000275466,0.0000255335],"category_scores_gemma":[0.0002121623,0.0001471884,0.0001965071,0.0008318699,0.0005578682,0.000070772,0.000331157,0.000318277,1.570592e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001434173,"about_ca_system_score_gemma":0.0001378363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009782147,"about_ca_topic_score_gemma":0.0003830742,"domain_scores_codex":[0.9987056,0.0001603524,0.0004554061,0.0003149887,0.0001156993,0.0002480134],"domain_scores_gemma":[0.9970428,0.0001522768,0.000251398,0.001788363,0.0005924329,0.0001727275],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000624383,0.00003613771,0.08420817,0.00002505182,0.0001244699,7.92622e-8,0.0002827296,0.0000164214,0.9123808,0.001835999,0.000757465,0.0002702808],"study_design_scores_gemma":[0.001170541,0.001228747,0.9562142,0.00005441928,0.0002712419,0.0005232301,0.0001942386,0.00006366511,0.003442791,0.0240641,0.01251055,0.000262247],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889928,0.0001263414,0.0002236183,0.007745283,0.0004574743,0.001647168,0.0004870835,0.00008048634,0.0002397166],"genre_scores_gemma":[0.9943743,0.00001163563,0.004351048,0.0004885506,0.00007386514,0.000197802,0.000447394,0.00002396008,0.0000314953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.908938,"threshold_uncertainty_score":0.6002171,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2080572487","doi":"10.1107/s2053230x14019372","title":"The structure of lactoferrin-binding protein B from<i>Neisseria meningitidis</i>suggests roles in iron acquisition and neutralization of host defences","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Program for Education and Research in Biotechnology, California State University; Fondation pour la Recherche Médicale; University of Calgary; Alberta Innovates; Women and Children's Health Research Institute; Children's Health Research Institute","keywords":"Lactoferrin; Neisseria meningitidis; Neutralization; Microbiology; Immune escape; Host (biology); Biology; Chemistry; Virology; Bacteria; Genetics; Immune system","authors":[{"name":"Cory L. Brooks","is_ca":false},{"name":"Elena Arutyunova","is_ca":true},{"name":"M. Joanne Lemieux","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01061020155080938,"gpt":0.2728882556874672,"spread":0.2622780541366578,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002418888,0.0001658695,0.0002713509,0.0002834222,0.0005822239,0.00003332749,0.0004063662,0.0002437395,0.00001735733],"category_scores_gemma":[0.0000869194,0.0001327259,0.00006222068,0.000512674,0.000661389,0.0001922824,0.0001029487,0.0003293801,5.030488e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003225963,"about_ca_system_score_gemma":0.0000154869,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008080652,"about_ca_topic_score_gemma":0.005528939,"domain_scores_codex":[0.9981977,0.0006947934,0.0005669073,0.0002337027,0.00008450919,0.0002224289],"domain_scores_gemma":[0.9982802,0.0004382569,0.0004967319,0.0005975171,0.0001388728,0.00004836851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001403752,0.00001622257,0.06123324,0.00003273623,0.00001601773,1.962985e-8,0.000518907,0.000004573775,0.932166,0.005369599,0.000007395828,0.0004949007],"study_design_scores_gemma":[0.001937559,0.000800859,0.9037246,0.0003390988,0.00008943093,0.00001822593,0.002077869,0.001427219,0.04794271,0.03725071,0.00390204,0.0004896892],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99614,0.0003624154,0.00002361258,0.002566307,0.0002263792,0.0004381006,0.0001261953,0.00004464353,0.00007236742],"genre_scores_gemma":[0.9981912,0.0003761925,0.0008436677,0.00005162854,0.00004202218,0.00001521734,0.0004658052,0.00001266665,0.000001637692],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8842233,"threshold_uncertainty_score":0.5412406,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2048323857","doi":"10.1107/s2053230x14000144","title":"The structure of human tau-tubulin kinase 1 both in the apo form and in complex with an inhibitor","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Basic Energy Sciences; National Research Council Canada; Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Office of Science; University of Saskatchewan; Canadian Light Source; Canadian Institutes of Health Research; Industrial Macromolecular Crystallography Association Collaborative Access Team; U.S. Department of Energy","keywords":"Casein kinase 2; Cyclin-dependent kinase 9; MAP2K7; Mitogen-activated protein kinase kinase; MAP kinase kinase kinase; Kinase; Cyclin-dependent kinase 2; Casein kinase 2, alpha 1; Protein kinase domain; ASK1; Biology; Cell biology; Biochemistry; Chemistry; Protein kinase A; Molecular biology; Gene","authors":[{"name":"Susan E. Kiefer","is_ca":false},{"name":"ChiehYing Chang","is_ca":false},{"name":"Satoshi Kimura","is_ca":false},{"name":"Mian Gao","is_ca":false},{"name":"Dianlin Xie","is_ca":false},{"name":"Yaqun Zhang","is_ca":false},{"name":"Guifen Zhang","is_ca":false},{"name":"Martin B. Gill","is_ca":false},{"name":"Harold Mastalerz","is_ca":false},{"name":"Lorin A. Thompson","is_ca":false},{"name":"Angela Cacace","is_ca":false},{"name":"S. Sheriff","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02702151539396848,"gpt":0.3197415574751397,"spread":0.2927200420811712,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002103888,0.0001480739,0.0002094537,0.0002057454,0.000492181,0.00002364657,0.0003903477,0.0000972608,0.00001499049],"category_scores_gemma":[0.00004929827,0.00007095558,0.00004474091,0.0004324682,0.001201963,0.0001065765,0.000107604,0.0003590571,4.575989e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002730865,"about_ca_system_score_gemma":0.00004130051,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003232123,"about_ca_topic_score_gemma":0.008147813,"domain_scores_codex":[0.9986563,0.0005046914,0.0002727429,0.0002044035,0.0001228869,0.0002390283],"domain_scores_gemma":[0.9983507,0.0003344573,0.0001199062,0.001011549,0.00008286635,0.0001004969],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001037815,0.0002272706,0.8265073,0.00003616269,0.0007492265,0.000003980356,0.0007091733,0.000001349741,0.1583171,0.009770489,0.00005049976,0.00258957],"study_design_scores_gemma":[0.001669038,0.0008763663,0.9822525,0.00003054046,0.00007287217,0.00003693335,0.0005079141,0.0001298695,0.0000570414,0.01323346,0.001035248,0.00009816754],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944645,0.0005624127,0.000003256587,0.004203946,0.0000141823,0.0005612667,0.00005095426,0.00001836358,0.0001211801],"genre_scores_gemma":[0.9988762,0.0002884381,0.0002282693,0.0001142963,0.00003155089,0.00003350864,0.0004165789,0.000009858272,0.000001324198],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1582601,"threshold_uncertainty_score":0.4546671,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2118181073","doi":"10.1107/s2053230x1402425x","title":"The structure of the cyanobactin domain of unknown function from PatG in the patellamide gene cluster","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Discovery Centre","funders":"Biotechnology and Biological Sciences Research Council; Engineering and Physical Sciences Research Council; University of St Andrews; Diamond Light Source; Wellcome Trust","keywords":"Biosynthesis; Gene cluster; Function (biology); Domain (mathematical analysis); Computational biology; Gene; Sequence (biology); Protein domain; Biology; Architecture domain; Protein structure; Stereochemistry; Chemistry; Biochemistry; Genetics; Computer science","authors":[{"name":"Greg Mann","is_ca":false},{"name":"Jesko Koehnke","is_ca":false},{"name":"Andrew F. Bent","is_ca":false},{"name":"R. Scott Graham","is_ca":false},{"name":"Wael E. Houssen","is_ca":true},{"name":"Marcel Jaspars","is_ca":true},{"name":"James H. Naismith","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.006345762573224539,"gpt":0.2253680167249983,"spread":0.2190222541517738,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003191453,0.0001547196,0.0001608775,0.0000487217,0.0004188936,0.00001632409,0.001262334,0.0002454311,0.000008439425],"category_scores_gemma":[0.0001432283,0.00007931668,0.0001421396,0.0003297457,0.0006234722,0.000007324588,0.000336877,0.0002951773,3.9843e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008642189,"about_ca_system_score_gemma":0.00003675753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002856217,"about_ca_topic_score_gemma":0.003448841,"domain_scores_codex":[0.9983527,0.0007631909,0.0003794831,0.0002218708,0.0001000896,0.0001826642],"domain_scores_gemma":[0.9976613,0.0002615136,0.0003582845,0.001575406,0.0001211168,0.00002239252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007472545,0.00001583277,0.002555853,0.000004240305,0.00005835644,1.122243e-8,0.0001235435,0.0000138007,0.994583,0.001832115,0.0000193269,0.0007191964],"study_design_scores_gemma":[0.001509802,0.0007288785,0.1009628,0.00004100489,0.000170005,0.00005043616,0.001487359,0.0003514685,0.5818638,0.1494655,0.1629147,0.0004542075],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967538,0.0002917861,0.0005975722,0.001466429,0.0003283066,0.0002949973,0.00008248018,0.000007235843,0.0001774473],"genre_scores_gemma":[0.998652,0.0005170776,0.0002377235,0.0002711362,0.00006895336,0.00001701273,0.000219149,0.00001045472,0.000006540603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4127192,"threshold_uncertainty_score":0.323444,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1111737918","doi":"10.1107/s2053230x15010195","title":"Cloning, expression, purification and crystallographic studies of galectin-11 from domestic sheep (<i>Ovis aries</i>)","year":2015,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Galectins and Cancer Biology","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Monash University; Australian Synchrotron; National Health and Medical Research Council; U.S. Department of State","keywords":"Galectin; Ovis; Biology; Cloning (programming); Glycan; Evolutionary biology; Computational biology; Innate immune system; Livestock; Cell biology; Genetics; Immune system; Glycoprotein; Ecology","authors":[{"name":"Dhanasekaran Sakthivel","is_ca":false},{"name":"Dene R. Littler","is_ca":false},{"name":"Adam Shahine","is_ca":false},{"name":"Sally Troy","is_ca":false},{"name":"Matthew D. Johnson","is_ca":false},{"name":"Jamie Rossjohn","is_ca":true},{"name":"David Piedrafita","is_ca":false},{"name":"Travis Beddoe","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03920615218079293,"gpt":0.3050738459530868,"spread":0.2658676937722939,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0004207225,0.0003791618,0.0006848163,0.0005019124,0.000723202,0.00002637579,0.0008148312,0.0006516486,0.00008020755],"category_scores_gemma":[0.0005272314,0.0003202543,0.0001622728,0.0008074291,0.002785052,0.0002000009,0.0005410012,0.0006402173,0.000001138341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005460118,"about_ca_system_score_gemma":0.0001045265,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001154742,"about_ca_topic_score_gemma":0.001468612,"domain_scores_codex":[0.9970961,0.0009793325,0.0008015098,0.0006272406,0.00006104039,0.0004347404],"domain_scores_gemma":[0.9965335,0.0007323432,0.000651949,0.00138561,0.0006050649,0.00009159421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001807952,0.00006160087,0.08033959,0.00001680381,0.0005033195,5.805224e-7,0.001288014,0.000004570528,0.9142505,0.001964512,0.0008022909,0.0005874427],"study_design_scores_gemma":[0.009831679,0.003216148,0.3894286,0.0002810759,0.001231706,0.001051003,0.01461359,0.00008629849,0.02309404,0.109752,0.4449321,0.002481794],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9735498,0.02231963,0.0002003773,0.001739115,0.001146783,0.0004147364,0.0001530981,0.0001965354,0.0002798548],"genre_scores_gemma":[0.9933456,0.004069325,0.001265071,0.0001423863,0.0000626573,0.0001068769,0.0009077624,0.00002522376,0.00007515876],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8911564,"threshold_uncertainty_score":0.9999288,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2543866388","doi":"10.1107/s2053230x16015612","title":"Crystal structure of fuculose aldolase from the Antarctic psychrophilic yeast<i>Glaciozyma antarctica</i>PI12","year":2016,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Universiti Teknologi Malaysia; Universiti Kebangsaan Malaysia; Ministério da Ciência, Tecnologia e Inovação; Monash University; Australian Synchrotron","keywords":"Psychrophile; Yeast; Aldolase A; Chemistry; Crystallography; Biochemistry; Astrobiology; Biology; Enzyme","authors":[{"name":"Nardiah Rizwana Jaafar","is_ca":false},{"name":"Dene R. Littler","is_ca":false},{"name":"Travis Beddoe","is_ca":false},{"name":"Jamie Rossjohn","is_ca":true},{"name":"Rosli Md Illias","is_ca":false},{"name":"Nor Muhammad Mahadi","is_ca":false},{"name":"Mukram Mohamed Mackeen","is_ca":false},{"name":"Abdul Munir Abdul Murad","is_ca":false},{"name":"Farah Diba Abu Bakar","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01485454686428805,"gpt":0.2665788071276104,"spread":0.2517242602633223,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002158364,0.0002636078,0.0002928214,0.0001112245,0.0007444334,0.00002689154,0.001775162,0.0002732724,0.003473687],"category_scores_gemma":[0.0002825194,0.0001522177,0.0001889676,0.0006676342,0.003331461,0.0003466167,0.0010282,0.0005170904,0.00001086292],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001250289,"about_ca_system_score_gemma":0.00003687262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003106372,"about_ca_topic_score_gemma":0.009520717,"domain_scores_codex":[0.99755,0.0007603117,0.0004671119,0.0004726675,0.0002149324,0.000535039],"domain_scores_gemma":[0.9967394,0.0007719777,0.000273316,0.001977001,0.00005558017,0.0001827176],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007468928,0.00003391246,0.2163984,0.000002358996,0.0001025755,5.261522e-7,0.0001471631,0.000001718613,0.781035,0.0002142861,0.0006400566,0.001349259],"study_design_scores_gemma":[0.001041182,0.0003785975,0.9117313,0.00002016215,0.00007742595,0.00009255532,0.0002088773,0.00007902198,0.001579283,0.02639359,0.05803717,0.000360832],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877732,0.0002053923,0.0001028802,0.01022141,0.0002742874,0.0003866847,0.0006799984,0.00007047409,0.0002857135],"genre_scores_gemma":[0.997672,0.000690082,0.0008876002,0.0003949276,0.00009872005,0.00002370173,0.0001877655,0.00002089396,0.00002436569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7794557,"threshold_uncertainty_score":0.9993809,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2172486832","doi":"10.1107/s2053230x15016064","title":"Structural analysis of SepL, an enteropathogenic<i>Escherichia coli</i>type III secretion-system gatekeeper protein","year":2015,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Lawrence Berkeley National Laboratory; Ciência sem Fronteiras; Canadian Institutes of Health Research; Centre for Blood Research, University of British Columbia; Ministério da Educação; Howard Hughes Medical Institute","keywords":"Secretion; Translocon; Effector; Type three secretion system; Virulence; Escherichia coli; Cytoplasm; Secretory protein; Enteropathogenic Escherichia coli; Biology; Cell biology; Transport protein; Microbiology; Type VI secretion system; Membrane protein; Inner membrane; Membrane; Biochemistry; Gene","authors":[{"name":"Brianne J. Burkinshaw","is_ca":true},{"name":"Sergio A. Souza","is_ca":true},{"name":"N.C.J. Strynadka","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02917134125312597,"gpt":0.3023807547953589,"spread":0.2732094135422329,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005007749,0.0003365681,0.000530738,0.0004495137,0.0004835672,0.00004442235,0.001173012,0.0003923397,0.00002403142],"category_scores_gemma":[0.0001968622,0.0003022803,0.000300318,0.001889411,0.0009449584,0.00003882219,0.0007086077,0.0004014166,3.388539e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007035964,"about_ca_system_score_gemma":0.0001728234,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005587752,"about_ca_topic_score_gemma":0.001805337,"domain_scores_codex":[0.9970991,0.00103618,0.0006295206,0.0005842329,0.0002267838,0.0004241732],"domain_scores_gemma":[0.9962747,0.00004792394,0.0004080747,0.001987188,0.001024454,0.0002576725],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002679501,0.00003511779,0.02904598,0.00001601631,0.00151471,4.602764e-7,0.0002615469,0.0001186115,0.9678512,0.0007472996,0.00006078773,0.00008029051],"study_design_scores_gemma":[0.0125516,0.01661576,0.6954386,0.0001760767,0.006691432,0.000216787,0.02043583,0.09010767,0.03257409,0.002821179,0.1165166,0.005854373],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971656,0.0007912401,0.0001882966,0.0002745251,0.0002331992,0.0005999269,0.0001620319,0.00009106234,0.0004941369],"genre_scores_gemma":[0.994767,0.0002068794,0.002297326,0.00007903876,0.0001108776,0.000127319,0.002325788,0.00003010718,0.00005563002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9352772,"threshold_uncertainty_score":0.999943,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1099975975","doi":"10.1107/s2053230x15011188","title":"Structure of GTP-specific succinyl-CoA synthetase in complex with CoA","year":2015,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":11,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Research Council Canada; Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Saskatchewan; Canadian Light Source","keywords":"GTP'; Chemistry; Histidine; Residue (chemistry); Protein subunit; Stereochemistry; Biochemistry; Binding site; C-terminus; Amino acid; Enzyme","authors":[{"name":"Ji Huang","is_ca":true},{"name":"Manpreet Malhi","is_ca":true},{"name":"Jan Deneke","is_ca":true},{"name":"M.E. Fraser","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.03651569694753647,"gpt":0.2727791866254246,"spread":0.2362634896778881,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002548245,0.0002964394,0.000449537,0.000460964,0.0002948971,0.0000436456,0.0009300578,0.0003000207,0.0003485069],"category_scores_gemma":[0.00006992753,0.0002270816,0.00008706754,0.001040165,0.001161681,0.0003105259,0.0002473466,0.0004835334,0.000001156961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008793838,"about_ca_system_score_gemma":0.00008079926,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006561495,"about_ca_topic_score_gemma":0.004545204,"domain_scores_codex":[0.9978936,0.0005100268,0.000589566,0.0004435072,0.000198999,0.0003642472],"domain_scores_gemma":[0.9973835,0.0002085043,0.0003970453,0.001525257,0.0003439251,0.0001417174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002004429,0.00002951501,0.02188058,0.0000114484,0.00003177321,0.000001003026,0.0003908284,0.0001003836,0.973515,0.003173162,0.0004567705,0.0002091196],"study_design_scores_gemma":[0.01040843,0.00366598,0.5922286,0.0001966638,0.0003582262,0.001252012,0.006884614,0.001192433,0.08803715,0.06676567,0.2258804,0.003129772],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965474,0.000403361,0.0002089031,0.0008228899,0.0004160489,0.0003712116,0.0002590092,0.0001287409,0.0008424252],"genre_scores_gemma":[0.9937509,0.0001199898,0.005243071,0.00009695145,0.0000801589,0.00001910254,0.0006577799,0.0000228408,0.000009163322],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8854778,"threshold_uncertainty_score":0.926012,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2889587114","doi":"10.1107/s2053230x18011809","title":"Conformational changes on substrate binding revealed by structures of <i>Methylobacterium extorquens</i> malate dehydrogenase","year":2018,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Los Alamos National Laboratory; Biological and Environmental Research; Canada Foundation for Innovation; National Center for Research Resources; National Institute of General Medical Sciences; Western Economic Diversification Canada; Basic Energy Sciences; Canadian Light Source; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; University of Saskatchewan; National Research Council Canada; U.S. Department of Energy","keywords":"Malate dehydrogenase; Ternary complex; Stereochemistry; NAD+ kinase; Active site; Oxidoreductase; Chemistry; Binding site; Substrate (aquarium); Crystallography; Enzyme; Biochemistry; Biology","authors":[{"name":"Javier González","is_ca":false},{"name":"Ricardo Martí‐Arbona","is_ca":false},{"name":"Julian C.‐H. Chen","is_ca":false},{"name":"Brian Broom-Peltz","is_ca":false},{"name":"Clifford J. Ünkefer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02015474592515293,"gpt":0.2735142498013615,"spread":0.2533595038762086,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003281046,0.0003136185,0.0003524233,0.0003612778,0.0008024033,0.00006275912,0.000829166,0.0003471592,0.0005475251],"category_scores_gemma":[0.00008405403,0.0002625855,0.0001201273,0.0006141025,0.001456232,0.000241241,0.0001898353,0.0003586619,0.000004355717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005233735,"about_ca_system_score_gemma":0.00004432099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001419122,"about_ca_topic_score_gemma":0.0004339787,"domain_scores_codex":[0.9980481,0.0003887028,0.0005773506,0.0004005808,0.0001921713,0.0003930999],"domain_scores_gemma":[0.9975461,0.0002328541,0.0006075602,0.001127389,0.0003701071,0.0001159307],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001152152,0.000014762,0.00234908,0.00001449547,0.0000552352,1.721474e-7,0.0001830223,0.000002704698,0.9931206,0.003276622,0.0005953185,0.0002727693],"study_design_scores_gemma":[0.002120059,0.002357044,0.06156005,0.00009116747,0.0002179194,0.0002099759,0.000582122,0.0002800518,0.8216027,0.01767789,0.09195342,0.001347629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953119,0.0001426628,0.0001000685,0.0009581894,0.00104025,0.0003159392,0.0006714932,0.0001658152,0.00129372],"genre_scores_gemma":[0.9966745,0.0001798954,0.001469603,0.0003683576,0.0002199263,0.00003598072,0.0009891252,0.00002163939,0.00004092358],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1715179,"threshold_uncertainty_score":0.9999827,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3040657414","doi":"10.1107/s2053230x20008201","title":"Tartryl-CoA inhibits succinyl-CoA synthetase","year":2020,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Wellcome Trust","keywords":"Residue (chemistry); Chemistry; Biochemistry; Protein subunit; Histidine; Citric acid cycle; GTP'; Coenzyme A; Carboxylate; Stereochemistry; Enzyme","authors":[{"name":"Ji Huang","is_ca":true},{"name":"M.E. Fraser","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0208700456217439,"gpt":0.2607850437488063,"spread":0.2399149981270624,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001864451,0.0003107951,0.0002816495,0.0001147911,0.0006078196,0.00004819756,0.001007029,0.000450034,0.0001455432],"category_scores_gemma":[0.0002629156,0.0002871629,0.0002401582,0.0004366501,0.0004515843,0.0000195999,0.0005614923,0.0003554763,0.000004447756],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001320217,"about_ca_system_score_gemma":0.00005684794,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006372306,"about_ca_topic_score_gemma":0.0001117632,"domain_scores_codex":[0.998068,0.0004688847,0.0004236213,0.0005671718,0.0001042941,0.0003679681],"domain_scores_gemma":[0.9979467,0.00007921902,0.0002280238,0.001369654,0.0001519757,0.000224391],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008440098,0.0000215114,0.001970454,0.00000973629,0.0001313396,5.663431e-7,0.0000771959,0.000005587256,0.9945683,0.001114596,0.0006523427,0.001363914],"study_design_scores_gemma":[0.001113884,0.001154541,0.003369339,0.00002551236,0.0001433931,0.0001348263,0.0003927273,0.0002565111,0.2402518,0.003679984,0.7484174,0.001060167],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828965,0.001612874,0.001208675,0.01178177,0.0003145444,0.0005523709,0.0001726681,0.0001628754,0.001297705],"genre_scores_gemma":[0.9934179,0.001007007,0.002690118,0.001491049,0.0002887733,0.00009118056,0.0009361115,0.0000364166,0.00004146957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7543166,"threshold_uncertainty_score":0.999958,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W1985080084","doi":"10.1107/s2053230x14002106","title":"Structure of human farnesyl pyrophosphate synthase in complex with an aminopyridine bisphosphonate and two molecules of inorganic phosphate","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Bone health and treatments","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canadian Light Source","keywords":"Farnesyl pyrophosphate; Pyrophosphate; Chemistry; Bisphosphonate; Stereochemistry; Enzyme; Ternary complex; Conformational change; Isopentenyl pyrophosphate; Binding site; Ligand (biochemistry); Hydrolase; ATP synthase; Biochemistry; Receptor; Biology","authors":[{"name":"Jaeok Park","is_ca":true},{"name":"Yih‐Shyan Lin","is_ca":true},{"name":"Youla S. Tsantrizos","is_ca":true},{"name":"Albert M. Berghuis","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0185160124676565,"gpt":0.3003316055541244,"spread":0.2818155930864679,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001172155,0.0002556608,0.0005794914,0.0003746834,0.0002400189,0.000008721478,0.0002890114,0.0001816853,0.0000497674],"category_scores_gemma":[0.00004145222,0.0001978575,0.00006132742,0.0007273784,0.001062278,0.0001174136,0.0001333407,0.0003618355,5.526778e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003875371,"about_ca_system_score_gemma":0.00005398885,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005018986,"about_ca_topic_score_gemma":0.007362407,"domain_scores_codex":[0.9984614,0.0002449185,0.0005669448,0.0003415322,0.0001081006,0.0002771391],"domain_scores_gemma":[0.9980195,0.000117827,0.0004124733,0.001069229,0.0002126571,0.0001682771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003646787,0.0001228421,0.3568319,0.00007122326,0.0001319846,0.000001194608,0.0001949911,0.000004725949,0.6386512,0.002186403,0.000002272307,0.001436612],"study_design_scores_gemma":[0.004442854,0.002352158,0.9776597,0.00007182741,0.0001750469,0.0001092636,0.0001739469,0.0007635074,0.01026697,0.003362902,0.0003914977,0.0002303002],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981066,0.0005748114,0.00002064746,0.0005439904,0.00003930663,0.0004872771,0.00009287731,0.00004980851,0.00008469798],"genre_scores_gemma":[0.9958634,0.0003876224,0.00285749,0.0001117387,0.000007287294,0.00001578639,0.0007274462,0.0000249009,0.000004378303],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6283842,"threshold_uncertainty_score":0.8068395,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2341613060","doi":"10.1107/s2053230x16004611","title":"Co-crystal structures of the protein kinase haspin with bisubstrate inhibitors","year":2016,"lang":"en","type":"letter","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":9,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Ministero dello Sviluppo Economico; Eesti Teadusagentuur; Ontario Ministry of Economic Development and Innovation; Genome Canada; Wellcome Trust; GlaxoSmithKline; Pfizer; Eli Lilly and Company","keywords":"Histone H3; Protein kinase A; Chemistry; Biochemistry; Kinase; Histone; Phosphorylation; Docking (animal); Binding site; Protein kinase inhibitor; Cell biology; DNA; Biology","authors":[{"name":"Darja Lavõgina","is_ca":false},{"name":"Katrin Kestav","is_ca":false},{"name":"A. Chaikuad","is_ca":false},{"name":"Christina Heroven","is_ca":false},{"name":"Stefan Knapp","is_ca":false},{"name":"Asko Uri","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01501417707132348,"gpt":0.2512941312335894,"spread":0.2362799541622659,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002634754,0.0006720169,0.000659298,0.0004532984,0.001101664,0.0001002732,0.002366157,0.001435253,0.0004110172],"category_scores_gemma":[0.00008115724,0.0003678536,0.0003625668,0.0007929764,0.003575878,0.0002907022,0.0003539064,0.002142787,0.000001497997],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001028851,"about_ca_system_score_gemma":0.0002251743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003085288,"about_ca_topic_score_gemma":0.0006210614,"domain_scores_codex":[0.9962412,0.001046965,0.0008783869,0.0007714594,0.0004139564,0.0006480838],"domain_scores_gemma":[0.9946581,0.0002673652,0.001364151,0.003216816,0.0004132109,0.00008042616],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007052646,0.000007739382,0.00128451,0.00007130409,0.0001311136,0.000002185543,0.00008289052,0.000001765632,0.9703473,0.0005539308,0.02726718,0.0001795251],"study_design_scores_gemma":[0.001172007,0.0006772504,0.007967985,0.0003375604,0.0003085228,0.0002485283,0.0001235962,0.000005497517,0.08205714,0.01468955,0.8912082,0.001204203],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7530835,0.0005171765,0.0001608645,0.2379222,0.002418544,0.002209419,0.001634121,0.0003937287,0.001660484],"genre_scores_gemma":[0.9857457,0.00006131781,0.0008321955,0.01088246,0.001328755,0.0001629849,0.0007376316,0.0000709807,0.0001779914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8882902,"threshold_uncertainty_score":0.9998773,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2944145120","doi":"10.1107/s2053230x19006046","title":"Structures of soluble rabbit neprilysin complexed with phosphoramidon or thiorphan","year":2019,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan; Université de Montréal; Canadian Light Source (Canada)","funders":"Basic Energy Sciences; National Center for Research Resources; National Institute of General Medical Sciences; Western Economic Diversification Canada; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; University of Saskatchewan; Canadian Light Source; U.S. Department of Energy","keywords":"Phosphoramidon; Neprilysin; Thiorphan; Chemistry; Extracellular; Enkephalinase; Endopeptidase; Oligopeptide; Pharmacology; Biochemistry; Biophysics; Enzyme; Peptide; Biology; Receptor; Enkephalin","authors":[{"name":"Shaunivan Labiuk","is_ca":true},{"name":"J. Sygusch","is_ca":true},{"name":"Paweł Grochulski","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02244765780615039,"gpt":0.2912995010540496,"spread":0.2688518432478992,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001323689,0.0002523864,0.0005624369,0.0004599705,0.0002935694,0.00002552839,0.0004403789,0.0002455092,0.001300315],"category_scores_gemma":[0.00004342601,0.0001700601,0.0002336222,0.001208107,0.0007772681,0.0001476983,0.0001770464,0.0004891135,0.000002016151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004494786,"about_ca_system_score_gemma":0.0001055766,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003701835,"about_ca_topic_score_gemma":0.0005902782,"domain_scores_codex":[0.9984939,0.0001989486,0.0004934082,0.0003606509,0.0001754358,0.0002776715],"domain_scores_gemma":[0.9973985,0.0001764771,0.0003668129,0.001577016,0.0003545567,0.0001266162],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000741243,0.00008842485,0.0711555,0.00005803223,0.0005607287,0.000001561912,0.0001766227,0.00001709441,0.9231356,0.003284016,0.0002599048,0.0005212898],"study_design_scores_gemma":[0.01617739,0.006694443,0.8062684,0.0009477038,0.001819577,0.00153704,0.004790157,0.005319742,0.02855898,0.01336228,0.1123806,0.002143729],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943833,0.0001280983,0.0001243952,0.0025201,0.0000821656,0.0005075003,0.00004850012,0.0001494711,0.002056483],"genre_scores_gemma":[0.9938999,0.0001687972,0.004274006,0.0004240791,0.00003945581,0.00002213878,0.0008641513,0.00002278772,0.000284664],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8945766,"threshold_uncertainty_score":0.9996126,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2941275067","doi":"10.1107/s2053230x19004151","title":"Phasing with calcium at home","year":2019,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Institute of Genetics; Natural Sciences and Engineering Research Council of Canada","keywords":"Phaser; Diffractometer; Calcium; Substructure; Synchrotron; Protein Data Bank; Crystallography; Diffraction; Chemistry; Materials science; Protein structure; Physics; Optics; Biochemistry; Crystal structure","authors":[{"name":"Shuaiqi Guo","is_ca":true},{"name":"Robert L. Campbell","is_ca":true},{"name":"Peter L. Davies","is_ca":true},{"name":"John S. Allingham","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01699480057915442,"gpt":0.2625070193819308,"spread":0.2455122188027764,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001633172,0.000234299,0.0002608907,0.0002216003,0.0007587626,0.00006022469,0.000691684,0.0002351656,0.00114747],"category_scores_gemma":[0.00001694872,0.0001751629,0.00009440033,0.000538985,0.0005850676,0.0003196805,0.0003231171,0.0003427018,0.00001690896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009055833,"about_ca_system_score_gemma":0.00003407472,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001684327,"about_ca_topic_score_gemma":0.0005123321,"domain_scores_codex":[0.9985446,0.000240512,0.0003011198,0.0004285736,0.0001299607,0.000355267],"domain_scores_gemma":[0.9978985,0.0001737606,0.0002256508,0.00146062,0.000151617,0.00008990958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000888885,0.000007925748,0.03577761,0.000007968693,0.00003348614,2.921979e-7,0.0001511876,0.00001406061,0.9622141,0.001433453,0.0001345497,0.0001364905],"study_design_scores_gemma":[0.006214827,0.002954735,0.4675695,0.0001268925,0.0004195835,0.001600893,0.001662092,0.001020973,0.05127903,0.01878627,0.4453216,0.003043594],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935092,0.000221052,0.0002241296,0.0009887023,0.0009407594,0.0003218188,0.00004582565,0.0002761947,0.003472349],"genre_scores_gemma":[0.9970044,0.00006011373,0.002058121,0.0002256999,0.0001035992,0.00003079441,0.0002794775,0.00002261472,0.0002152029],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.910935,"threshold_uncertainty_score":0.9997656,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3080191377","doi":"10.1107/s2053230x20010328","title":"The structure of <i>Pf</i>GH50B, an agarase from the marine bacterium <i>Pseudoalteromonas fuliginea</i> PS47","year":2020,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Glycoside hydrolase; Hydrolase; Sulfolobus solfataricus; Pseudoalteromonas; Thermophile; Chemistry; Stereochemistry; Biochemistry; Enzyme; Biology; Gene; Archaea","authors":[{"name":"B. Pluvinage","is_ca":true},{"name":"Craig S. Robb","is_ca":true},{"name":"Roderick Jeffries","is_ca":true},{"name":"A.B. Boraston","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01299397159674871,"gpt":0.2483160464885067,"spread":0.235322074891758,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001061402,0.0002291221,0.0001916264,0.00003208692,0.0007284306,0.00005879533,0.001217616,0.0002307633,0.00008153052],"category_scores_gemma":[0.0001301631,0.0001491423,0.0001328036,0.0003590034,0.0006960554,0.00002647579,0.0005239063,0.0003761625,3.299512e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007844539,"about_ca_system_score_gemma":0.00004309704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008531154,"about_ca_topic_score_gemma":0.0008004908,"domain_scores_codex":[0.9983588,0.0004949934,0.0004278565,0.0004016887,0.00009819442,0.0002184725],"domain_scores_gemma":[0.9976854,0.00009041867,0.0003372378,0.001552822,0.0002269331,0.0001071468],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001220885,0.00001641138,0.01078117,0.000004214991,0.0001163469,7.828672e-8,0.0001655625,0.00000509094,0.9869039,0.0002596645,0.0007095323,0.000915908],"study_design_scores_gemma":[0.000893606,0.0006920666,0.1046628,0.00000751495,0.0001193014,0.00004257108,0.0005661126,0.0003383886,0.1304996,0.001657864,0.7600061,0.0005140552],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9834127,0.0003852242,0.0001538784,0.01492176,0.0003905753,0.000296236,0.0002990457,0.00005126563,0.00008934963],"genre_scores_gemma":[0.9913431,0.00113917,0.0005466053,0.00170274,0.000527215,0.00001433139,0.004681908,0.00002258622,0.00002230838],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8564044,"threshold_uncertainty_score":0.6081845,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2955409178","doi":"10.1107/s2053230x19007726","title":"Structural characterization of <i>Treponema pallidum</i> Tp0225 reveals an unexpected leucine-rich repeat architecture","year":2019,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"Institute of Infection and Immunity; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Treponema; Biology; Pathogen; Leucine-rich repeat; Architecture domain; Human pathogen; Genetics; Bacteria; Microbiology; Gene; Syphilis; Virology","authors":[{"name":"Raghavendran Ramaswamy","is_ca":true},{"name":"Simon Houston","is_ca":true},{"name":"Bianca C. Loveless","is_ca":true},{"name":"Caroline E. Cameron","is_ca":true},{"name":"Martin J. Boulanger","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02096813921046518,"gpt":0.2862965306279412,"spread":0.265328391417476,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001683417,0.0003730274,0.0006868193,0.0005089853,0.0003323771,0.00003127386,0.0005320779,0.0003956882,0.0003240714],"category_scores_gemma":[0.00009677953,0.0002943224,0.0002610747,0.001012775,0.0004137403,0.0002321449,0.0002087425,0.0005248802,0.000001327293],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008296344,"about_ca_system_score_gemma":0.0000656056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002330286,"about_ca_topic_score_gemma":0.0002502846,"domain_scores_codex":[0.9975902,0.0004588111,0.0007977664,0.0005935075,0.0002041845,0.0003555172],"domain_scores_gemma":[0.9961083,0.0002285128,0.0005793841,0.002480067,0.0004298477,0.0001738942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001177313,0.0000824805,0.3378636,0.00003332158,0.0002372776,0.00000103728,0.0003651301,0.000004630921,0.6601364,0.0004266646,0.00001130217,0.0007204387],"study_design_scores_gemma":[0.001694028,0.001135827,0.98967,0.00008483936,0.0002591404,0.0002542381,0.000264995,0.0002014171,0.002588238,0.001321564,0.002198951,0.0003267248],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945098,0.0002716001,0.00001799039,0.00290638,0.0003576697,0.001133728,0.0001896316,0.0002132524,0.0003999138],"genre_scores_gemma":[0.9925321,0.0004955583,0.001175005,0.0003322388,0.0001169355,0.00009370944,0.005149637,0.00003960878,0.00006522569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6575482,"threshold_uncertainty_score":0.9999509,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2002909960","doi":"10.1107/s2053230x1402010x","title":"<i>In situ</i>proteolysis, crystallization and preliminary X-ray diffraction analysis of a V<sub>H</sub>H that binds listeria internalin B","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Guelph; National Research Council Canada","funders":"National Research Council Canada; Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Program for Education and Research in Biotechnology, California State University; University of Saskatchewan; Canadian Light Source","keywords":"Proteolysis; Crystallization; Monoclinic crystal system; Trypsin; Listeria monocytogenes; Crystallography; Molecular biology; Listeria; Pathogen; Chemistry; Biology; Bacteria; Microbiology; Biochemistry; Crystal structure; Enzyme; Genetics","authors":[{"name":"Ian Huh","is_ca":false},{"name":"Robert Gene","is_ca":true},{"name":"Jyothi Kumaran","is_ca":true},{"name":"C. Roger MacKenzie","is_ca":true},{"name":"Cory L. Brooks","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0214411997992422,"gpt":0.3036775135668431,"spread":0.2822363137676009,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003667155,0.0002239632,0.000558659,0.001376866,0.000240344,0.00002823144,0.0003207553,0.0002711213,0.00004147416],"category_scores_gemma":[0.0001276552,0.0001884719,0.0002456726,0.001607634,0.0006691705,0.0002142399,0.0003068333,0.0004901724,2.823541e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004661842,"about_ca_system_score_gemma":0.0000282381,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005192799,"about_ca_topic_score_gemma":0.001314874,"domain_scores_codex":[0.9981222,0.0005106481,0.0005420828,0.0003788734,0.0001835153,0.0002626437],"domain_scores_gemma":[0.9981168,0.0004105878,0.0003230174,0.0008283536,0.0001982033,0.0001230489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005026461,0.00007995743,0.1277436,0.00004919412,0.0006349187,8.656378e-7,0.00018643,0.00001872778,0.8686998,0.0004280787,0.00002408126,0.001631672],"study_design_scores_gemma":[0.0007393056,0.0007051955,0.981161,0.00005744025,0.0006807439,0.00005122064,0.0001406407,0.007337369,0.003922509,0.0008978735,0.004095435,0.0002112449],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949702,0.000379872,0.0005897692,0.003166405,0.0001028103,0.0003851485,0.00004040079,0.00004338752,0.0003220064],"genre_scores_gemma":[0.9956682,0.002298382,0.0007854564,0.0002183992,0.00005444737,0.00005725994,0.0008698036,0.00001540693,0.00003269479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8647773,"threshold_uncertainty_score":0.768566,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3005237926","doi":"10.1107/s2053230x20001193","title":"Conformational flexibility within the small domain of human serine racemase","year":2020,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Discovery Centre","funders":"Medical Research Council; Diamond Light Source; University of Sussex; Wellcome Trust","keywords":"Serine; Stereochemistry; Pyridoxal phosphate; Chemistry; Malonate; Racemization; Enzyme; Cofactor; Biochemistry","authors":[{"name":"Chloe R. Koulouris","is_ca":true},{"name":"B.D. Bax","is_ca":false},{"name":"John Atack","is_ca":false},{"name":"S. Mark Roe","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02809015844489428,"gpt":0.282587595848412,"spread":0.2544974374035177,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002447735,0.0001638405,0.0001936778,0.00004755317,0.0004379269,0.00001543606,0.0007883834,0.0001914773,0.00003647479],"category_scores_gemma":[0.0001030633,0.0001194867,0.0001518537,0.0002730037,0.0008762451,0.00001148531,0.0004536524,0.000276542,2.722439e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006235798,"about_ca_system_score_gemma":0.00004985579,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007430244,"about_ca_topic_score_gemma":0.0002674006,"domain_scores_codex":[0.9988064,0.0002840493,0.0004446543,0.0002384282,0.00006730452,0.0001591725],"domain_scores_gemma":[0.9983946,0.00004185718,0.0003112715,0.0009923971,0.0001743436,0.00008550152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005820514,0.00001694528,0.0043646,0.00001148108,0.0001018403,6.151282e-8,0.0003144805,0.00003006555,0.9841013,0.01069362,0.0001599081,0.000147513],"study_design_scores_gemma":[0.004857381,0.002628632,0.2419879,0.00002952231,0.0003189355,0.0001857283,0.004956245,0.001652444,0.08400862,0.02425722,0.6335175,0.001599895],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934257,0.0004358401,0.0005395284,0.004278509,0.0001194447,0.0002971088,0.0001034319,0.00003151957,0.0007689415],"genre_scores_gemma":[0.9958726,0.0001478068,0.001986112,0.0007438251,0.0001334772,0.00003237911,0.001050132,0.00001091831,0.00002272648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9000927,"threshold_uncertainty_score":0.4872526,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2049008459","doi":"10.1107/s2053230x1402799x","title":"Solution-state NMR structure of the putative morphogene protein BolA (PFE0790c) from<i>Plasmodium falciparum</i>","year":2015,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Malaria Research and Control","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Toronto","funders":"Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Ontario Ministry of Economic Development and Innovation; Battelle; Wellcome Trust; National Institutes of Health; U.S. Department of Health and Human Services; Ontario Genomics; Genome Canada; Pfizer; Ontario Genomics Institute; Pacific Northwest National Laboratory; Eli Lilly and Company; National Institute of Allergy and Infectious Diseases; Ministero dello Sviluppo Economico; U.S. Department of Energy","keywords":"Plasmodium falciparum; Protein Data Bank (RCSB PDB); Biology; Nucleic acid; Protein structure; Protein secondary structure; Peptide sequence; Nuclear magnetic resonance spectroscopy; Structural motif; Helix (gastropod); Sequence alignment; Biochemistry; Genetics; Stereochemistry; Gene; Chemistry; Malaria","authors":[{"name":"Garry W. Buchko","is_ca":false},{"name":"Adelinda Yee","is_ca":true},{"name":"Anthony Semesi","is_ca":true},{"name":"Peter J. Myler","is_ca":false},{"name":"C.H. Arrowsmith","is_ca":true},{"name":"Raymond Hui","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02636573607279124,"gpt":0.2873275136501314,"spread":0.2609617775773402,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002221292,0.0002697372,0.0004407492,0.0001999976,0.0004631545,0.00003040148,0.0009821734,0.0003010121,0.000123649],"category_scores_gemma":[0.0004387143,0.000182469,0.0002506138,0.0009042116,0.001285892,0.0001555815,0.0004106196,0.0009288902,9.058814e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001029056,"about_ca_system_score_gemma":0.0003547612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001921648,"about_ca_topic_score_gemma":0.001429604,"domain_scores_codex":[0.997617,0.0007616859,0.0005348621,0.0003688547,0.0003023274,0.000415236],"domain_scores_gemma":[0.9966605,0.0002088078,0.000384095,0.001787296,0.0007012317,0.0002581234],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004389295,0.0000530999,0.01253044,0.00001299171,0.0004022933,8.526747e-7,0.0003507629,0.00001944374,0.9841591,0.001129581,0.0003934105,0.0005091373],"study_design_scores_gemma":[0.01713676,0.003144343,0.6390344,0.0002602536,0.001053422,0.0004228186,0.002467428,0.00805282,0.0733663,0.1522136,0.1012091,0.001638741],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9747974,0.0008935184,0.0002891269,0.0209138,0.0002435694,0.001407724,0.0008511884,0.00009597139,0.0005076604],"genre_scores_gemma":[0.9962602,0.0001083507,0.002320942,0.0002942232,0.00008484576,0.00008900559,0.0007051358,0.00002261363,0.0001146434],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9107928,"threshold_uncertainty_score":0.744087,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4297238482","doi":"10.1107/s2053230x22008500","title":"Purification, crystallization and crystallographic analysis of the PorX response regulator associated with the type IX secretion system","year":2022,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University","funders":"Alzheimer's Association","keywords":"Secretion; Porphyromonas gingivalis; Biology; Response regulator; Cell biology; Virulence; Regulator; Bacteria; Gene; Genetics; Biochemistry; Bacterial protein","authors":[{"name":"Anshu Saran","is_ca":true},{"name":"Nuwani Weerasinghe","is_ca":true},{"name":"Christopher J. Thibodeaux","is_ca":true},{"name":"Natalie Zeytuni","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.00835749486659033,"gpt":0.222844403817116,"spread":0.2144869089505257,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006304957,0.0001853544,0.0002339246,0.000331356,0.001288294,0.00002857687,0.0008936807,0.0002600311,0.00001556208],"category_scores_gemma":[0.0001236053,0.0001218319,0.0001512499,0.00274261,0.0009412494,0.00000823754,0.0006469346,0.000318018,1.420378e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004125147,"about_ca_system_score_gemma":0.0000814408,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005903936,"about_ca_topic_score_gemma":0.0005565843,"domain_scores_codex":[0.9976071,0.001329852,0.0003555316,0.000363968,0.0001462189,0.0001973402],"domain_scores_gemma":[0.9974744,0.0001079843,0.0005394081,0.00151797,0.000321439,0.00003879782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003050131,0.00002611964,0.02058435,0.000004316218,0.0008624135,5.954051e-8,0.00008846693,0.0002157323,0.9766074,0.001180545,0.00007860775,0.00004698332],"study_design_scores_gemma":[0.0007425821,0.001392521,0.9299538,0.00001333565,0.001351419,0.00007176459,0.001607568,0.002014228,0.001667357,0.0002698014,0.06048638,0.0004292869],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952247,0.0004431422,0.0001558751,0.003290517,0.0001886736,0.0004382531,0.0001836609,0.00004311638,0.00003205688],"genre_scores_gemma":[0.9982224,0.0001867615,0.0001254677,0.0001130186,0.00002683477,0.0000853285,0.001183762,0.00001754053,0.00003895301],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9749401,"threshold_uncertainty_score":0.9908649,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4297238478","doi":"10.1107/s2053230x22008810","title":"The structure of succinyl-CoA synthetase bound to the succinyl-phosphate intermediate clarifies the catalytic mechanism of ATP-citrate lyase","year":2022,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":5,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"ATP citrate lyase; Lyase; Allosteric regulation; Mutant; Citric acid cycle; Enzyme; Chemistry; Stereochemistry; Acetyl-CoA; Active site; Catalytic cycle; Biochemistry; Citrate synthase","authors":[{"name":"Ji Huang","is_ca":true},{"name":"M.E. Fraser","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.0121013575084759,"gpt":0.2480474111912257,"spread":0.2359460536827498,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0008820805,0.0002956782,0.0003527991,0.000191943,0.003567855,0.00009434306,0.002800629,0.0001582993,0.0002465192],"category_scores_gemma":[0.0002322501,0.0001572593,0.0002274057,0.001084,0.001505773,0.0001655278,0.001217324,0.0008613427,8.096649e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006672889,"about_ca_system_score_gemma":0.0001061834,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001215458,"about_ca_topic_score_gemma":0.003907096,"domain_scores_codex":[0.9969763,0.001149814,0.0007652491,0.0003964597,0.0002976714,0.0004145172],"domain_scores_gemma":[0.9952906,0.001045895,0.0007241269,0.002590183,0.0002714849,0.00007766762],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001785561,0.00001707797,0.000464235,0.00001293091,0.0001313353,3.748146e-7,0.001717034,0.0002052189,0.9765375,0.01991204,0.0004151569,0.0004085419],"study_design_scores_gemma":[0.003096779,0.003740666,0.09355934,0.0001020532,0.001650804,0.0007846213,0.03011208,0.002333352,0.3581039,0.24344,0.2607211,0.00235524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871163,0.0008300422,0.00009915868,0.008249513,0.001918156,0.0007850474,0.0008327563,0.00007295052,0.00009601655],"genre_scores_gemma":[0.9986692,0.0002744527,0.0001263441,0.0004648019,0.00008789901,0.0000918981,0.0002269972,0.00002349411,0.00003492982],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6184336,"threshold_uncertainty_score":0.9977294,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062063679","doi":"10.1107/s2053230x14018433","title":"Crystallization and preliminary X-ray diffraction analysis of the BRPF1 bromodomain in complex with its H2AK5ac and H4K12ac histone-peptide ligands","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Protein Degradation and Inhibitors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Brookhaven National Laboratory; National Institute of General Medical Sciences; National Institutes of Health; National Cancer Institute; Bryon Riesch Paralysis Foundation; University of Vermont; McGill University","keywords":"Bromodomain; Histone acetyltransferase; Chemistry; Crystallization; Histone; Crystallography; Molecular biology; Biochemistry; Biology","authors":[{"name":"Mulu Y. Lubula","is_ca":false},{"name":"Amanda Poplawaski","is_ca":false},{"name":"Karen C. Glass","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01100010821797785,"gpt":0.2578663944081038,"spread":0.246866286190126,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002092369,0.0001600982,0.0002300857,0.0003062339,0.0003033,0.00001931217,0.0002841274,0.0001979496,0.00000836769],"category_scores_gemma":[0.0001141997,0.0001196695,0.00007453358,0.0007777347,0.0005996446,0.00002374058,0.0002322659,0.0001845751,2.066626e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001783805,"about_ca_system_score_gemma":0.00001963912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001357184,"about_ca_topic_score_gemma":0.001491009,"domain_scores_codex":[0.9988458,0.0003140359,0.000316125,0.0003024921,0.00007928984,0.0001422428],"domain_scores_gemma":[0.9987708,0.00007507855,0.0002748166,0.0007096431,0.0001207228,0.00004891559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009245819,0.00002778613,0.07535166,0.00001119261,0.0001859749,3.527222e-8,0.00009348575,0.0001038282,0.9231246,0.000573185,0.0000374333,0.0003983695],"study_design_scores_gemma":[0.0005925947,0.0003910686,0.9831357,0.00001502141,0.0001915754,0.00001560995,0.0001203782,0.004282335,0.002036787,0.0002603196,0.008774074,0.0001845057],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973912,0.0003609035,0.0006504754,0.001059898,0.00004096652,0.0002915385,0.00002839654,0.00001655158,0.0001600655],"genre_scores_gemma":[0.9978488,0.0005818329,0.0007126421,0.0001265027,0.00002339908,0.00003341003,0.0006288245,0.00001109772,0.00003349767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9210878,"threshold_uncertainty_score":0.4879982,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2059981600","doi":"10.1107/s2053230x14017415","title":"Crystallization and preliminary X-ray diffraction analysis of the Pax9 paired domain bound to a DC5 enhancer DNA element","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Connexins and lens biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"McGill University; University of Toronto","funders":"","keywords":"Enhancer; DNA-binding domain; DNA; Biology; Transcription (linguistics); Transcription factor; HMG-box; Gene; Molecular biology; DNA-binding protein; Genetics","authors":[{"name":"Kamesh Narasimhan","is_ca":true},{"name":"Antonia Hilbig","is_ca":false},{"name":"Barath Udayasuryan","is_ca":false},{"name":"Sriram Jayabal","is_ca":true},{"name":"Prasanna R. Kolatkar","is_ca":false},{"name":"Ralf Jauch","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.008999427059045642,"gpt":0.2556270656613877,"spread":0.2466276386023421,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002958467,0.0001897209,0.0002604901,0.0002767154,0.0004674484,0.00002185914,0.0004922726,0.0002640642,0.00003017463],"category_scores_gemma":[0.0001330786,0.0001443519,0.0001934909,0.0008265111,0.0004754563,0.0000107776,0.0004745699,0.0001626309,9.290389e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002179857,"about_ca_system_score_gemma":0.00002662481,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001361127,"about_ca_topic_score_gemma":0.001827712,"domain_scores_codex":[0.9983358,0.0005835325,0.0003962719,0.0003929731,0.00007516774,0.0002162486],"domain_scores_gemma":[0.9981239,0.000103949,0.0002797046,0.001252795,0.0001688951,0.00007074255],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009848428,0.00003212194,0.02137837,0.000006324786,0.0005056332,2.429801e-8,0.0001402542,0.00007582957,0.9757986,0.000652865,0.0000682518,0.001243258],"study_design_scores_gemma":[0.000489515,0.0008602145,0.8904689,0.00001151265,0.0004580727,0.00001016711,0.0002964272,0.001130737,0.002250539,0.001237056,0.1024802,0.0003067302],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938383,0.0001965304,0.002949299,0.002243509,0.0001696409,0.0003760588,0.00005469354,0.00002196426,0.0001499665],"genre_scores_gemma":[0.997488,0.0003530199,0.0009835917,0.0003585295,0.0000683817,0.00007736121,0.0006243728,0.00001235137,0.00003445163],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9735481,"threshold_uncertainty_score":0.5886498,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2083926040","doi":"10.1107/s2053230x14007158","title":"A structural characterization of the isoniazid<i>Mycobacterium tuberculosis</i>drug target, Rv2971, in its unliganded form","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council; Australian Research Council; Medical Research Council; Australian Synchrotron; Pfizer","keywords":"Mycobacterium tuberculosis; Isoniazid; Tuberculosis; Computational biology; Drug discovery; Biology; Function (biology); Cloning (programming); Biochemistry; Chemistry; Genetics; Medicine; Computer science","authors":[{"name":"Adam Shahine","is_ca":false},{"name":"Anggia Prasetyoputri","is_ca":false},{"name":"Jamie Rossjohn","is_ca":true},{"name":"Travis Beddoe","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.009381901573279127,"gpt":0.252602759413139,"spread":0.2432208578398599,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002417192,0.0002349022,0.0002491701,0.0001513335,0.0002971936,0.00002578037,0.001049351,0.00033624,0.00002590893],"category_scores_gemma":[0.0001570864,0.0001749708,0.0002093326,0.0006053528,0.0005505891,0.00002100551,0.0007117947,0.0004127351,2.575245e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002831271,"about_ca_system_score_gemma":0.00005689308,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009668025,"about_ca_topic_score_gemma":0.0004498448,"domain_scores_codex":[0.9982133,0.0004694223,0.0004524681,0.0003875268,0.0001318066,0.0003454947],"domain_scores_gemma":[0.998171,0.00004240148,0.0002375519,0.001252221,0.0002214404,0.00007537111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005506903,0.00001936442,0.01882016,0.00002375213,0.00005406372,4.966138e-8,0.00005594858,0.000001985961,0.979937,0.0006810004,0.00002975008,0.0003218277],"study_design_scores_gemma":[0.001505453,0.0003159148,0.3778389,0.00005920192,0.00005632062,0.00006053544,0.00007520459,0.001180942,0.5574942,0.003916813,0.05684432,0.0006522886],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954665,0.000210303,0.00009541527,0.003200477,0.0002405023,0.0004318253,0.00008497321,0.00002320016,0.0002468275],"genre_scores_gemma":[0.9975926,0.0004787089,0.0002888293,0.0003108875,0.0000957508,0.0000620648,0.001094037,0.00002154402,0.00005559723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4224429,"threshold_uncertainty_score":0.7135103,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4407611318","doi":"10.1107/s2053230x25000913","title":"LOPAC library screening identifies suramin as a TRIM21 binder with a unique binding mode revealed by crystal structure","year":2025,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Protein Degradation and Inhibitors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Structural Genomics Consortium; Innovative Medicines Initiative; Diamond Light Source","keywords":"Isothermal titration calorimetry; Suramin; Ubiquitin ligase; Chemistry; Proteolysis; Stereochemistry; Computational biology; Biochemistry; Molecular biology; Biology; Ubiquitin; Receptor","authors":[{"name":"Yeojin Kim","is_ca":false},{"name":"Stefan Knapp","is_ca":false},{"name":"Andreas Krämer","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007468179598286336,"gpt":0.2622988209746032,"spread":0.2548306413763168,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001220692,0.0003492374,0.0002904441,0.0004419414,0.0008086601,0.0001405627,0.0008974944,0.0005210103,0.00008702792],"category_scores_gemma":[0.0001097308,0.0003004439,0.0001510213,0.001003389,0.0007075498,0.0000747088,0.0005007389,0.0005451044,3.080291e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002419694,"about_ca_system_score_gemma":0.0001624349,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001617977,"about_ca_topic_score_gemma":0.0002917516,"domain_scores_codex":[0.9980068,0.000489464,0.0004533386,0.0005714379,0.0001149125,0.0003640289],"domain_scores_gemma":[0.9980823,0.00008526511,0.0002704264,0.001299296,0.0001533022,0.0001093893],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001828025,0.00002504802,0.01490763,0.00001649084,0.0002764825,4.901319e-7,0.00004392443,0.000009561683,0.9784308,0.0006796471,0.004981118,0.0004460218],"study_design_scores_gemma":[0.006384826,0.00174664,0.03509903,0.000375084,0.0004066108,0.0004005931,0.002284416,0.0007026643,0.3467395,0.01125272,0.5918465,0.002761473],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910498,0.0009392443,0.002025164,0.003289654,0.0002018746,0.0006069627,0.0003726685,0.0001572422,0.001357451],"genre_scores_gemma":[0.9890711,0.000618153,0.002946604,0.0005528926,0.00006782332,0.00008079728,0.0055133,0.00003545347,0.001113864],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6316913,"threshold_uncertainty_score":0.9999447,"prediction_status":"machine_predicted_unvalidated"},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"agree"},{"id":"W2509805166","doi":"10.1107/s2053230x16011638","title":"Surface-layer protein from<i>Caulobacter crescentus</i>: expression, purification and X-ray crystallographic analysis","year":2016,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":4,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"National Research Council Canada; Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Caulobacter crescentus; S-layer; Paracrystalline; Protein expression; Crystallography; Protein crystallization; Crystallization; Bacteria; Layer (electronics); Biology; Chemistry; Bacterial protein; Cell biology; Biochemistry; Materials science; Gene; Nanotechnology; Genetics","authors":[{"name":"Michael D. Jones","is_ca":true},{"name":"Anson Chan","is_ca":true},{"name":"John F. Nomellini","is_ca":true},{"name":"M.E.P. Murphy","is_ca":true},{"name":"John Smit","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01667184605432653,"gpt":0.2519980386353403,"spread":0.2353261925810137,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003683844,0.000394765,0.0004658094,0.0005439126,0.0009447217,0.0001366883,0.0008985472,0.0004768161,0.0008620625],"category_scores_gemma":[0.0001239234,0.0002659096,0.0002532461,0.001348459,0.001135672,0.0006486059,0.0003898253,0.0003433075,0.000003635844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005319841,"about_ca_system_score_gemma":0.00003524519,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004382802,"about_ca_topic_score_gemma":0.0008033566,"domain_scores_codex":[0.9969892,0.0007832803,0.0006810846,0.0008595795,0.000216002,0.0004708526],"domain_scores_gemma":[0.9965923,0.0003612618,0.0004797588,0.002058362,0.0003077189,0.0002005988],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007004058,0.000026164,0.04369146,0.000005400384,0.0002098494,3.095136e-7,0.0001168242,0.000005062927,0.9547038,0.0006901353,0.0001434866,0.000337446],"study_design_scores_gemma":[0.002125755,0.0003609558,0.829408,0.0001094537,0.001145543,0.0000235233,0.0003661151,0.0002023163,0.06760368,0.02454212,0.07264999,0.001462509],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916621,0.0005606419,0.003027305,0.002922667,0.0003910401,0.0005214738,0.0003344775,0.0003420856,0.0002381647],"genre_scores_gemma":[0.991383,0.0005397724,0.007144305,0.0001448728,0.0001317299,0.00009667977,0.0004489399,0.00002800901,0.00008268848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8871002,"threshold_uncertainty_score":0.9999793,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4400081690","doi":"10.1107/s2053230x2400596x","title":"The structure of a pectin-active family 1 polysaccharide lyase from the marine bacterium <i>Pseudoalteromonas fuliginea</i>","year":2024,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pseudoalteromonas; Lyase; Subfamily; Enzyme; Chemistry; Active site; Biochemistry; Marine bacteriophage; Stereochemistry; Locus (genetics); Gene; Biology; Bacteria; Genetics","authors":[{"name":"Joanne K. Hobbs","is_ca":true},{"name":"A.B. Boraston","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01462044804258118,"gpt":0.233896397913665,"spread":0.2192759498710838,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001801653,0.0002856573,0.0002628435,0.00003800971,0.001209883,0.0001947927,0.001600585,0.0002320715,0.0002840339],"category_scores_gemma":[0.00006870947,0.00009490254,0.0002622572,0.0008728508,0.0006782504,0.0001890729,0.0005850866,0.0006922148,0.000001276363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000296353,"about_ca_system_score_gemma":0.0000295875,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007641427,"about_ca_topic_score_gemma":0.01253644,"domain_scores_codex":[0.9981848,0.0004184098,0.0004772511,0.0004027661,0.0001501703,0.0003665879],"domain_scores_gemma":[0.99625,0.002703454,0.0002329482,0.000602459,0.0001231759,0.00008799737],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006084593,0.0000108388,0.00364006,0.000003026449,0.0001874513,8.015028e-7,0.0001469095,7.630919e-7,0.9780905,0.0009928762,0.000443643,0.01642225],"study_design_scores_gemma":[0.0002958809,0.0004632559,0.5267626,0.00006771121,0.0002703222,0.0001536195,0.001670186,0.0007406135,0.009582955,0.02962227,0.4296338,0.0007367429],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9848257,0.00193066,0.000003866282,0.009584361,0.0008649885,0.0003423413,0.002061336,0.0001523962,0.0002343453],"genre_scores_gemma":[0.9953651,0.002651567,0.00009464727,0.0003581601,0.0003552144,0.00001840478,0.001117522,0.000003869296,0.00003547734],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9685076,"threshold_uncertainty_score":0.9989668,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2062558681","doi":"10.1107/s2053230x14011595","title":"Purification, crystallization and room-temperature X-ray diffraction of inositol dehydrogenase LcIDH2 from<i>Lactobacillus casei</i>BL23","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Dehydrogenase; Lactobacillus casei; NAD+ kinase; Inositol; Crystallization; X-ray crystallography; Alcohol dehydrogenase; Diffraction; Biology; Chemistry; Biochemistry; Crystallography; Enzyme; Fermentation; Optics","authors":[{"name":"Drew Bertwistle","is_ca":true},{"name":"Linda Vogt","is_ca":true},{"name":"Hari Babu Aamudalapalli","is_ca":true},{"name":"David R. J. Palmer","is_ca":true},{"name":"D.A.R. Sanders","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01033358420117609,"gpt":0.2387161325383275,"spread":0.2283825483371514,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003230388,0.0003262616,0.0003933069,0.0003294952,0.0008469422,0.00009734753,0.0005799304,0.000499234,0.0002177264],"category_scores_gemma":[0.0002276432,0.000288175,0.000119168,0.0006585793,0.0006353944,0.0005313324,0.0002055101,0.0004432214,0.000001292267],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005478557,"about_ca_system_score_gemma":0.0000406568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007136784,"about_ca_topic_score_gemma":0.0008709121,"domain_scores_codex":[0.9976013,0.0006648364,0.0006728167,0.0005761313,0.0001855394,0.0002993709],"domain_scores_gemma":[0.9970518,0.0004057004,0.000587413,0.001433215,0.0003829004,0.0001389769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006065425,0.00003162982,0.00823047,0.00001847853,0.00004591684,1.847753e-7,0.0002653227,0.00004276551,0.9888872,0.001748157,0.000197436,0.0004718057],"study_design_scores_gemma":[0.004260057,0.001472737,0.5768788,0.0001565951,0.0008960514,0.0002763043,0.00161953,0.005704005,0.2038246,0.04569392,0.1567391,0.002478342],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948273,0.0005392512,0.001678349,0.001185226,0.0007094123,0.000374375,0.0002060278,0.0002036554,0.0002764106],"genre_scores_gemma":[0.9933636,0.0003943983,0.004437027,0.0001873592,0.0002197863,0.00007846787,0.001271786,0.00002647607,0.00002107087],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7850626,"threshold_uncertainty_score":0.999957,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2886884710","doi":"10.1107/s2053230x18006842","title":"Structural studies of the unusual metal-ion site of the GH124 endoglucanase from<i>Ruminiclostridium thermocellum</i>","year":2018,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":3,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Diamond Light Source","keywords":"Chemistry; Clostridium thermocellum; Histidine; Active site; Binding site; Metal; Transition metal; Context (archaeology); Cellulase; Enzyme; Biochemistry; Organic chemistry; Biology","authors":[{"name":"S. Urresti","is_ca":false},{"name":"Alan Cartmell","is_ca":false},{"name":"Feng Liu","is_ca":true},{"name":"Paul H. Walton","is_ca":false},{"name":"G.J. Davies","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02827238233092791,"gpt":0.2597495048424662,"spread":0.2314771225115383,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001567653,0.0002246988,0.0002874911,0.0001296857,0.0005549355,0.00001049901,0.0009947175,0.000218297,0.00007584592],"category_scores_gemma":[0.0001096288,0.0001306815,0.0002583173,0.0008793093,0.002556685,0.0001226043,0.0005214206,0.0004424384,5.314055e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000450663,"about_ca_system_score_gemma":0.00002948403,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003302447,"about_ca_topic_score_gemma":0.0005602856,"domain_scores_codex":[0.9985617,0.0003662681,0.0004926207,0.0002339628,0.0001367401,0.0002086929],"domain_scores_gemma":[0.9975606,0.0002215449,0.0003032164,0.00159809,0.0002763113,0.00004023464],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000236439,0.000009486872,0.007783651,0.00002780245,0.0003199953,2.709983e-8,0.0005753636,0.00001336077,0.9902661,0.0002422069,0.0003506513,0.0003876488],"study_design_scores_gemma":[0.001832829,0.0004896736,0.2285525,0.0001363297,0.0007276107,0.00005369401,0.003821889,0.003981063,0.6924664,0.009959079,0.05703981,0.0009390985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933606,0.001485561,0.000007308753,0.001855653,0.002368065,0.0003291833,0.0001987914,0.00009718584,0.0002976774],"genre_scores_gemma":[0.9989004,0.0005478934,0.0001638734,0.00008731383,0.0001773538,0.00001080298,0.0000654274,0.00001655601,0.00003035676],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2977998,"threshold_uncertainty_score":0.9420212,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3080465451","doi":"10.1107/s2053230x20010237","title":"High-resolution structure of the alcohol dehydrogenase domain of the bifunctional bacterial enzyme AdhE","year":2020,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Universiti Sains Islam Malaysia; Ministry of Higher Education, Malaysia; Diamond Light Source","keywords":"Alcohol dehydrogenase; Bifunctional; Aldehyde dehydrogenase; Chemistry; Biochemistry; Phosphofructokinase 2; Dehydrogenase; Enzyme; Escherichia coli; Oxidoreductase; Alcohol; Gene","authors":[{"name":"Liyana Azmi","is_ca":true},{"name":"Éilís C. Bragginton","is_ca":false},{"name":"Ian T. Cadby","is_ca":false},{"name":"Olwyn Byron","is_ca":true},{"name":"Andrew J. Roe","is_ca":true},{"name":"Andrew L. Lovering","is_ca":false},{"name":"Mads Gabrielsen","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01730223594847634,"gpt":0.2377810499672266,"spread":0.2204788140187503,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001582465,0.000250724,0.0003266444,0.00009859885,0.0008095731,0.00002586239,0.001553523,0.0003294059,0.0005657717],"category_scores_gemma":[0.0001931738,0.0001485581,0.0003016822,0.001042231,0.001543322,0.0001935843,0.0006570913,0.0005065686,5.104484e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004241776,"about_ca_system_score_gemma":0.0001063283,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000312291,"about_ca_topic_score_gemma":0.0006053703,"domain_scores_codex":[0.997676,0.0007994177,0.0006568556,0.0003567955,0.0002521549,0.0002588442],"domain_scores_gemma":[0.997306,0.000187341,0.0007379078,0.00143662,0.0002541523,0.00007793014],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001234025,0.00001336896,0.003512204,0.00001609746,0.00006459098,3.982055e-8,0.0002619518,0.0001736648,0.9894864,0.005917521,0.0003856083,0.00004516921],"study_design_scores_gemma":[0.002754018,0.0006263662,0.2059791,0.00006720524,0.0004157756,0.0001210901,0.0006106874,0.0005217856,0.7091896,0.03891321,0.04004643,0.0007547433],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917541,0.000142396,0.0001721422,0.004661749,0.002001596,0.0004450418,0.0006744788,0.00006717803,0.0000813342],"genre_scores_gemma":[0.997664,0.00003059835,0.001416164,0.0003576938,0.0002995781,0.00001508636,0.0001939547,0.00001683179,0.000006073524],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2802968,"threshold_uncertainty_score":0.6226664,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4223419017","doi":"10.1107/s2053230x22003612","title":"The structure of <i>Synechococcus elongatus</i> enolase reveals key aspects of phosphoenolpyruvate binding","year":2022,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"","funders":"Los Alamos National Laboratory; Biological and Environmental Research; Canadian Light Source; Natural Sciences and Engineering Research Council of Canada; Basic Energy Sciences; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Office of Science; Agencia Nacional de Promoción Científica y Tecnológica; U.S. Department of Energy; SLAC National Accelerator Laboratory; Consejo Nacional de Investigaciones Científicas y Técnicas; National Institutes of Health; University of Saskatchewan","keywords":"Enolase; Phosphoenolpyruvate carboxykinase; Enzyme; Substrate (aquarium); Active site; Lyase; Structural biology; Substrate specificity","authors":[],"retraction":null,"screen_n_in":null,"score":{"opus":0.01139046842127416,"gpt":0.246311180416942,"spread":0.2349207119956679,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0004765298,0.0002505259,0.0003803401,0.0002806281,0.002240596,0.00003661791,0.001665365,0.0001764095,0.0004009025],"category_scores_gemma":[0.0001787788,0.0001891553,0.0001943585,0.001219418,0.001101063,0.0001829741,0.0008318535,0.0006471384,2.665223e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008159973,"about_ca_system_score_gemma":0.0000916447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002791672,"about_ca_topic_score_gemma":0.0004935802,"domain_scores_codex":[0.9974309,0.0007751519,0.0007825195,0.0003695009,0.000264991,0.0003769225],"domain_scores_gemma":[0.9963007,0.0006522173,0.0009554399,0.001761481,0.0002600898,0.00007007661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009225146,0.00001771082,0.002804953,0.00001396147,0.00006959013,2.908539e-7,0.0003329105,0.00006107932,0.985104,0.01095157,0.0002533931,0.0002983479],"study_design_scores_gemma":[0.00220161,0.00171739,0.02332082,0.00005398307,0.0003801006,0.0003080857,0.004017299,0.0002113356,0.7471884,0.1115354,0.107881,0.001184649],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950633,0.0008979578,0.00003310627,0.0007294617,0.001254395,0.0004111544,0.0007059677,0.0001006276,0.0008040511],"genre_scores_gemma":[0.998298,0.0003234147,0.0008582023,0.0000817547,0.00005595245,0.00003409327,0.0002968545,0.0000222396,0.00002942417],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2379156,"threshold_uncertainty_score":0.9990584,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2326144685","doi":"10.1107/s2053230x16003526","title":"Binding of Gd<sup>3+</sup>to the neuronal signalling protein calexcitin identifies an exchangeable Ca<sup>2+</sup>-binding site","year":2016,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Ion channel regulation and function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Alberta","funders":"Diamond Light Source","keywords":"Binding site; EF hand; Calcium-binding protein; Calcium; Chemistry; Biophysics; Metal; Metal ions in aqueous solution; Biochemistry; Biology","authors":[{"name":"Lucas M. P. Chataigner","is_ca":false},{"name":"Jingxu Guo","is_ca":false},{"name":"P.T. Erskine","is_ca":false},{"name":"Alun R. Coker","is_ca":false},{"name":"Steve Wood","is_ca":false},{"name":"Zoltán Gombos","is_ca":true},{"name":"J.B. Cooper","is_ca":false}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02256204071563025,"gpt":0.2628335269234779,"spread":0.2402714862078477,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004760808,0.0002950467,0.0002550384,0.0003785801,0.0009553715,0.00006115651,0.0008389376,0.0003599972,0.0001508327],"category_scores_gemma":[0.0002489169,0.0002075138,0.0002005784,0.0006023734,0.0005316549,0.00006121279,0.0004394992,0.0002807835,0.000005267623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004086801,"about_ca_system_score_gemma":0.00005463569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001611763,"about_ca_topic_score_gemma":0.000211634,"domain_scores_codex":[0.9977144,0.0006151454,0.0005436782,0.0005399382,0.0001747817,0.0004120811],"domain_scores_gemma":[0.9978921,0.0001471561,0.0002946534,0.001196526,0.0003273395,0.0001422216],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001087627,0.0000295603,0.001937918,0.00001215465,0.00009893638,1.884916e-7,0.0004906556,0.002467214,0.9936108,0.0001284816,0.0004591923,0.0006561349],"study_design_scores_gemma":[0.007294866,0.006056669,0.02438956,0.0006769425,0.0005917215,0.0004296017,0.01351722,0.06688882,0.1889385,0.00481617,0.681753,0.004646997],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922723,0.0001377463,0.003014511,0.003259695,0.0002196216,0.0006372408,0.0002978493,0.00006627667,0.0000947501],"genre_scores_gemma":[0.9967642,0.0002082802,0.0004745499,0.000182814,0.0004111968,0.0001500206,0.001332479,0.00003486049,0.0004415531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8046724,"threshold_uncertainty_score":0.8462169,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4410761699","doi":"10.1107/s2053230x2500425x","title":"The structure of a family 168 glycoside hydrolase from the marine bacterium <i>Muricauda eckloniae</i>","year":2025,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Glycoside hydrolase; Bacteria; Glycoside; Stereochemistry; Microbiology; Biology; Chemistry; Genetics; Gene","authors":[{"name":"Emily Knudson-Goerner","is_ca":true},{"name":"A.B. Boraston","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.007396266285002225,"gpt":0.2477017467511307,"spread":0.2403054804661285,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001356836,0.0002075181,0.0001782224,0.00007403486,0.0008858877,0.00005345647,0.00110638,0.0002598693,0.00002538804],"category_scores_gemma":[0.0001682929,0.0001330285,0.0001476759,0.0005277992,0.0008075999,0.00001473306,0.0006750925,0.0003629284,2.110187e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001625968,"about_ca_system_score_gemma":0.00007242338,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002710123,"about_ca_topic_score_gemma":0.001175356,"domain_scores_codex":[0.9985008,0.0004330083,0.0004329844,0.0003418327,0.00007780398,0.0002136192],"domain_scores_gemma":[0.9973893,0.0001889003,0.0002908865,0.001853501,0.0002377275,0.00003972992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001066172,0.0000164688,0.01757309,0.000003794575,0.0001937852,4.001182e-8,0.00003636607,0.000005654148,0.9788625,0.0007091948,0.001207728,0.001284745],"study_design_scores_gemma":[0.0007940964,0.0001878853,0.2631432,0.00001789453,0.0001469426,0.00001985202,0.0003283457,0.0001583216,0.05762394,0.007298524,0.6699497,0.0003312819],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871762,0.001109078,0.0002124012,0.009860178,0.000685294,0.0003256772,0.0002257509,0.00003863742,0.0003667192],"genre_scores_gemma":[0.9933688,0.002846778,0.0004119902,0.0009358639,0.000164488,0.00002464702,0.002113057,0.00001377403,0.0001205863],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9212386,"threshold_uncertainty_score":0.6813622,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2407556820","doi":"10.1107/s2053230x16007214","title":"Putative thioredoxin Trx1 from<i>Thermosipho africanus</i>strain TCF52B: expression, purification and structural determination using S-SAD","year":2016,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true},"ca_institutions":"Canadian Light Source (Canada); University of Saskatchewan","funders":"National Research Council Canada; Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Alberta; University of Saskatchewan; Canadian Light Source","keywords":"Thioredoxin; Strain (injury); Chemistry; Crystallography; Synchrotron radiation; Molecular biology; Biology; Analytical Chemistry (journal); Biochemistry; Chromatography; Gene; Physics; Optics","authors":[{"name":"Naheda Sahtout","is_ca":true},{"name":"Jijin R. A. Kuttiyatveetil","is_ca":true},{"name":"Michel Fodje","is_ca":true},{"name":"D.A.R. Sanders","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.02257402759270302,"gpt":0.2772307781980485,"spread":0.2546567506053455,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003077646,0.0003856629,0.0003644793,0.0003319769,0.001142982,0.0001206267,0.000741862,0.0004268704,0.0003112571],"category_scores_gemma":[0.0002114098,0.000269582,0.0001217058,0.0004934992,0.001270849,0.0008472646,0.0003024476,0.0003342285,0.00000179138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001241941,"about_ca_system_score_gemma":0.00005849945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003496173,"about_ca_topic_score_gemma":0.0002726575,"domain_scores_codex":[0.9972183,0.0007891302,0.0006395529,0.0007270618,0.00020248,0.0004235316],"domain_scores_gemma":[0.9971599,0.0006099773,0.0005859841,0.001196689,0.0002917302,0.0001557433],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006425657,0.000009251729,0.003741862,0.000005473658,0.00002761035,4.512101e-7,0.0006344119,0.000003761455,0.989525,0.0007365444,0.00002650343,0.005224941],"study_design_scores_gemma":[0.004371902,0.0008000298,0.5066769,0.0002470915,0.0004861878,0.0003761768,0.002711949,0.0047313,0.2643105,0.2013376,0.01136313,0.002587219],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.98984,0.0003683101,0.005936781,0.001496635,0.0007348218,0.000449286,0.0007079292,0.0002680707,0.0001981868],"genre_scores_gemma":[0.9837921,0.0002020961,0.01514422,0.0001266636,0.0002103924,0.00006750653,0.0003989535,0.00003339669,0.00002468933],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7252144,"threshold_uncertainty_score":0.9999756,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W3127199063","doi":"10.1107/s2053230x21000911","title":"Sleuthing biochemical evidence to elucidate unassigned electron density in a CBL–SLAP2 crystal complex","year":2021,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Chronic Lymphocytic Leukemia Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"Garron Family Cancer Centre; Canadian Institutes of Health Research; Cancer Research Society; American Brain Tumor Association","keywords":"Ubiquitin ligase; Signal transducing adaptor protein; Chemistry; Dimer; Cell biology; Proto-oncogene tyrosine-protein kinase Src; Tyrosine kinase; Mutant; Kinase; Ubiquitin; Biochemistry; Signal transduction; Biology; Gene","authors":[{"name":"Leanne Wybenga-Groot","is_ca":true},{"name":"C. Jane McGlade","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.05358675031315942,"gpt":0.3606501148318358,"spread":0.3070633645186764,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003918051,0.0002919624,0.0005123228,0.0006203918,0.0003598902,0.00005574555,0.0007208108,0.0003906508,0.0001394149],"category_scores_gemma":[0.0009842417,0.0002822798,0.0001850484,0.002262404,0.0006285558,0.0001630404,0.0009178754,0.0009211469,0.000002718397],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002221379,"about_ca_system_score_gemma":0.001407019,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001960466,"about_ca_topic_score_gemma":0.00282702,"domain_scores_codex":[0.9971764,0.0006102218,0.0005706985,0.0006945706,0.0002654972,0.0006826195],"domain_scores_gemma":[0.9965259,0.0005880134,0.0001413096,0.002080404,0.0003541683,0.0003101341],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000237636,0.00007009542,0.01156825,0.00004075039,0.0001171951,0.00002471934,0.000214879,0.00000521689,0.9860285,0.0004905793,0.001010457,0.0001917527],"study_design_scores_gemma":[0.03547014,0.00338178,0.6928704,0.002178015,0.0008498848,0.01214665,0.003120352,0.03090466,0.096646,0.009552663,0.1088096,0.004069809],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872544,0.0007981411,0.0002632357,0.009906427,0.0001109432,0.0006454224,0.00002078099,0.0002661965,0.0007345005],"genre_scores_gemma":[0.9921061,0.0005895872,0.005738358,0.0008035655,0.00008693408,0.000085484,0.0004204592,0.00004654843,0.000122997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8893825,"threshold_uncertainty_score":0.9999629,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W2905810216","doi":"10.1107/s2053230x18017235","title":"AtNPR4 from <i>Arabidopsis thaliana</i>: expression, purification, crystallization and crystallographic analysis","year":2018,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false},"ca_institutions":"Queen's University","funders":"Postdoctoral Research Foundation of China; National Natural Science Foundation of China","keywords":"Arabidopsis thaliana; Crystallization; Expression (computer science); Crystallography; Computational biology; Cell biology; Chemistry; Biology; Computer science; Biochemistry; Gene; Programming language","authors":[{"name":"Qingzhan Yang","is_ca":false},{"name":"Mengze Zhang","is_ca":false},{"name":"Jimin Zheng","is_ca":false},{"name":"Zongchao Jia","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01188792697604906,"gpt":0.2602363763085965,"spread":0.2483484493325475,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002321027,0.000325919,0.0003252758,0.0004413683,0.0009226281,0.00008679571,0.000864091,0.0004639193,0.0001230003],"category_scores_gemma":[0.0001380857,0.0003016196,0.0002186496,0.001340574,0.000943274,0.00003602781,0.0004749748,0.0002270691,6.043429e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001461512,"about_ca_system_score_gemma":0.00005170072,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003000985,"about_ca_topic_score_gemma":0.001411015,"domain_scores_codex":[0.9979349,0.0003136288,0.0004861257,0.0007775177,0.0001348747,0.0003529543],"domain_scores_gemma":[0.9971344,0.00007400546,0.0003413071,0.001821454,0.0004511604,0.0001776909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005428056,0.00003510183,0.01367211,0.000005193281,0.0005014266,1.437404e-7,0.0001284606,0.000003083713,0.9845775,0.0006297216,0.0001217801,0.0002712414],"study_design_scores_gemma":[0.002413283,0.001600623,0.1504396,0.00007252991,0.002519229,0.0001003481,0.001533702,0.002203982,0.3249964,0.04545869,0.466117,0.002544566],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9765389,0.0008526091,0.02012458,0.0009697141,0.0002362197,0.0003511914,0.0002539686,0.0001126294,0.0005601689],"genre_scores_gemma":[0.9894162,0.002268555,0.004672138,0.0003807354,0.0002289049,0.0001014838,0.00285163,0.00003073769,0.00004958647],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6595811,"threshold_uncertainty_score":0.9999436,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4283795884","doi":"10.1107/s2053230x22006604","title":"Structural study of <i>Legionella pneumophila</i> effector DotY (Lpg0294), a component of the Dot/Icm type IV secretion system","year":2022,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; Canada Excellence Research Chairs, Government of Canada","keywords":"Effector; Legionella pneumophila; Secretion; Protein subunit; Cell biology; Biology; Legionella; Bacteria; Chemistry; Microbiology; Biochemistry; Genetics","authors":[{"name":"Ivy Yeuk Wah Chung","is_ca":true},{"name":"Mirosław Cygler","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01777821200972184,"gpt":0.270721609008326,"spread":0.2529433969986041,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000359738,0.0002328189,0.000331968,0.0001960817,0.001060293,0.00001487311,0.001527054,0.0001682886,0.00001221043],"category_scores_gemma":[0.00005377448,0.0001777567,0.0002267846,0.000911874,0.0006503855,0.00001104886,0.001611632,0.0005409937,1.466504e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006102234,"about_ca_system_score_gemma":0.00009177651,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007838713,"about_ca_topic_score_gemma":0.0003583786,"domain_scores_codex":[0.9971046,0.001379112,0.000556924,0.0004046912,0.0002775365,0.000277135],"domain_scores_gemma":[0.997164,0.0001053538,0.0004917071,0.001865932,0.0003038833,0.00006911769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002432912,0.0001046272,0.05406076,0.00003685629,0.0002235576,3.777387e-7,0.0002603843,0.0001930783,0.9442787,0.0003814472,0.0001599097,0.00005705469],"study_design_scores_gemma":[0.01077648,0.01651259,0.8644189,0.0001319017,0.0008512884,0.001021862,0.01899096,0.008037733,0.01756546,0.001371866,0.05805242,0.002268568],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971221,0.0004036407,0.000005275278,0.0004945621,0.0006606578,0.0009676901,0.0001483463,0.00003180366,0.0001659163],"genre_scores_gemma":[0.9989919,0.0001142796,0.00004619776,0.00004855431,0.0000837582,0.0001031763,0.0005656505,0.00002265472,0.00002382088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9267132,"threshold_uncertainty_score":0.8155022,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null},{"id":"W4408058089","doi":"10.1107/s2053230x25001219","title":"The structure of the <i>Gemella haemolysans</i> M26 IgA1 protease trypsin-like domain","year":2025,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Complement system in diseases","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false},"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Trypsin; Proteases; Protease; Serine protease; Enzyme; Serine; Biology; Chemistry; Biochemistry","authors":[{"name":"Norman Tran","is_ca":true},{"name":"Jasmina S. Redzic","is_ca":false},{"name":"Elan Eisenmesser","is_ca":false},{"name":"Todd Holyoak","is_ca":true}],"retraction":null,"screen_n_in":null,"score":{"opus":0.01033917444955679,"gpt":0.263524092457267,"spread":0.2531849180077103,"validation_status":"score_only:v0-immature-baseline"},"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":["sts"],"category_scores_codex":[0.000250432,0.0003042685,0.0003551387,0.0002153607,0.002526613,0.00004097355,0.002693521,0.0003655412,0.0001487591],"category_scores_gemma":[0.0001661467,0.0001817519,0.0003397851,0.001091708,0.002799412,0.0000836851,0.001063495,0.0007318354,9.508798e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005999239,"about_ca_system_score_gemma":0.0001483906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002866968,"about_ca_topic_score_gemma":0.00142476,"domain_scores_codex":[0.9967238,0.001665693,0.0007470567,0.0003845363,0.00006291599,0.0004160132],"domain_scores_gemma":[0.9953809,0.0008002991,0.0005101173,0.003021584,0.0002581053,0.00002900843],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001128549,0.00004428512,0.0336669,0.00002750872,0.0005989488,9.869634e-8,0.000160164,0.000003658247,0.9388115,0.01998037,0.005906805,0.0006869418],"study_design_scores_gemma":[0.001879417,0.0001454033,0.13799,0.0001183522,0.0003281159,0.0000814665,0.001577021,0.00001515448,0.009242022,0.05270109,0.7954741,0.0004478558],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9806097,0.004615702,0.00004859732,0.009152972,0.00251319,0.00157603,0.0004495419,0.0001423076,0.0008919488],"genre_scores_gemma":[0.9984834,0.0002199905,0.0001428977,0.0003487025,0.00002720447,0.00008562818,0.0003421652,0.00001494362,0.0003350553],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9295694,"threshold_uncertainty_score":0.9999144,"prediction_status":"machine_predicted_unvalidated"},"labels":[],"label_agreement":null}]}